chr1	CG	SV	815474	5649523	11	.	.	ID=1584;Type=complex;Left=chr1:815474-815629-;Right=chr1:5649178-5649523-;Distance=4833894;DiscordantMatePairAlignments=11;LeftRepeat=AluS:SINE:Alu;SegDup;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	815474	815629	11	-	.	ID=1584;Type=complex;Left=chr1:815474-815629;Right=chr1:5649178-5649523
chr1	CG	SV	5649178	5649523	11	-	.	ID=1584;Type=complex;Left=chr1:815474-815629;Right=chr1:5649178-5649523
chr1	CG	SV	816172	5650278	10	.	.	ID=4735;Type=complex;Left=chr1:816172-816631+;Right=chr1:5650084-5650278+;Distance=4833912;DiscordantMatePairAlignments=10;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	816172	816631	10	+	.	ID=4735;Type=complex;Left=chr1:816172-816631;Right=chr1:5650084-5650278
chr1	CG	SV	5650084	5650278	10	+	.	ID=4735;Type=complex;Left=chr1:816172-816631;Right=chr1:5650084-5650278
chr1	CG	SV	859347	860430	19	.	.	ID=4740;Type=deletion;Left=chr1:859347-859730+;Right=chr1:860187-860430+;Distance=840;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;Tandem period 28;RightRepeat=Self chain;Tandem period 28;LeftGenes=NM_152486:+;RightGenes=NM_152486:+;XRef=rs70949527 (chr1:859334-860175);Frequency=1.00
chr1	CG	SV	859347	859730	19	+	.	ID=4740;Type=deletion;Left=chr1:859347-859730;Right=chr1:860187-860430
chr1	CG	SV	860187	860430	19	+	.	ID=4740;Type=deletion;Left=chr1:859347-859730;Right=chr1:860187-860430
chr1	CG	SV	953821	954848	93	.	.	ID=4738;Type=deletion;Left=chr1:953821-954381+;Right=chr1:954370-954848+;Distance=549;DiscordantMatePairAlignments=93;LeftRepeat=Self chain;Tandem period 61;RightRepeat=Self chain;Tandem period 61;LeftGenes=NM_198576:+;RightGenes=NM_198576:+;XRef=;Frequency=0.29
chr1	CG	SV	953821	954381	93	+	.	ID=4738;Type=deletion;Left=chr1:953821-954381;Right=chr1:954370-954848
chr1	CG	SV	954370	954848	93	+	.	ID=4738;Type=deletion;Left=chr1:953821-954381;Right=chr1:954370-954848
chr1	CG	SV	2901408	2902223	19	.	.	ID=4733;Type=deletion;Left=chr1:2901408-2901851+;Right=chr1:2901722-2902223+;Distance=314;DiscordantMatePairAlignments=19;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=L1ME3A:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	2901408	2901851	19	+	.	ID=4733;Type=deletion;Left=chr1:2901408-2901851;Right=chr1:2901722-2902223
chr1	CG	SV	2901722	2902223	19	+	.	ID=4733;Type=deletion;Left=chr1:2901408-2901851;Right=chr1:2901722-2902223
chr1	CG	SV	2908894	2909694	34	.	.	ID=4732;Type=deletion;Left=chr1:2908894-2909370+;Right=chr1:2909229-2909694+;Distance=335;DiscordantMatePairAlignments=34;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	2908894	2909370	34	+	.	ID=4732;Type=deletion;Left=chr1:2908894-2909370;Right=chr1:2909229-2909694
chr1	CG	SV	2909229	2909694	34	+	.	ID=4732;Type=deletion;Left=chr1:2908894-2909370;Right=chr1:2909229-2909694
chr1	CG	SV	5639887	5648779	15	.	.	ID=4730;Type=deletion;Left=chr1:5639887-5640023+;Right=chr1:5648482-5648779+;Distance=8595;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr1	CG	SV	5639887	5640023	15	+	.	ID=4730;Type=deletion;Left=chr1:5639887-5640023;Right=chr1:5648482-5648779
chr1	CG	SV	5648482	5648779	15	+	.	ID=4730;Type=deletion;Left=chr1:5639887-5640023;Right=chr1:5648482-5648779
chr1	CG	SV	5650250	5651225	164	.	.	ID=4729;Type=complex;Left=chr1:5650250-5650544+;Right=chr1:5650678-5651225+;Distance=428;DiscordantMatePairAlignments=164;LeftRepeat=Self chain;Tandem period 100;Tandem period 34;Tandem period 66;RightRepeat=Self chain;Tandem period 100;Tandem period 34;Tandem period 66;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	5650250	5650544	164	+	.	ID=4729;Type=complex;Left=chr1:5650250-5650544;Right=chr1:5650678-5651225
chr1	CG	SV	5650678	5651225	164	+	.	ID=4729;Type=complex;Left=chr1:5650250-5650544;Right=chr1:5650678-5651225
chr1	CG	SV	5943284	5949000	43	.	.	ID=4728;Type=deletion;Left=chr1:5943284-5943662+;Right=chr1:5948663-5949000+;Distance=5379;DiscordantMatePairAlignments=43;LeftRepeat=Self chain;RightRepeat=MER72:LTR:ERV1;Self chain;LeftGenes=NM_015102:-;RightGenes=NM_015102:-;XRef=;Frequency=0.00
chr1	CG	SV	5943284	5943662	43	+	.	ID=4728;Type=deletion;Left=chr1:5943284-5943662;Right=chr1:5948663-5949000
chr1	CG	SV	5948663	5949000	43	+	.	ID=4728;Type=deletion;Left=chr1:5943284-5943662;Right=chr1:5948663-5949000
chr1	CG	SV	9393587	9393951	14	.	.	ID=1580;Type=tandem-duplication;Left=chr1:9393587-9393749-;Right=chr1:9393853-9393951-;Distance=202;DiscordantMatePairAlignments=14;LeftRepeat=Tandem period 16;Tandem period 24;Tandem period 8;RightRepeat=Tandem period 16;Tandem period 24;Tandem period 8;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	9393587	9393749	14	-	.	ID=1580;Type=tandem-duplication;Left=chr1:9393587-9393749;Right=chr1:9393853-9393951
chr1	CG	SV	9393853	9393951	14	-	.	ID=1580;Type=tandem-duplication;Left=chr1:9393587-9393749;Right=chr1:9393853-9393951
chr1	CG	SV	11605480	11606090	16	.	.	ID=4724;Type=deletion;Left=chr1:11605480-11606054+;Right=chr1:11605776-11606090+;Distance=296;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr1	CG	SV	11605480	11606054	16	+	.	ID=4724;Type=deletion;Left=chr1:11605480-11606054;Right=chr1:11605776-11606090
chr1	CG	SV	11605776	11606090	16	+	.	ID=4724;Type=deletion;Left=chr1:11605480-11606054;Right=chr1:11605776-11606090
chr1	CG	SV	16923718	232979324	254	.	.	ID=674;Type=probable-inversion;Left=chr1:16923718-16924242-;Right=chr1:232978618-232979324+;Distance=216054376;DiscordantMatePairAlignments=254;LeftRepeat=SegDup;Self chain;RightRepeat=Tandem period 16;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	16923718	16924242	254	-	.	ID=674;Type=probable-inversion;Left=chr1:16923718-16924242;Right=chr1:232978618-232979324
chr1	CG	SV	232978618	232979324	254	-	.	ID=674;Type=probable-inversion;Left=chr1:16923718-16924242;Right=chr1:232978618-232979324
chr1	CG	SV	25031282	25034374	61	.	.	ID=4722;Type=deletion;Left=chr1:25031282-25031584+;Right=chr1:25034104-25034374+;Distance=2822;DiscordantMatePairAlignments=61;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=NM_013943:+;RightGenes=NM_013943:+;XRef=rs67502578 (chr1:25031274-25034096);Frequency=1.00
chr1	CG	SV	25031282	25031584	61	+	.	ID=4722;Type=deletion;Left=chr1:25031282-25031584;Right=chr1:25034104-25034374
chr1	CG	SV	25034104	25034374	61	+	.	ID=4722;Type=deletion;Left=chr1:25031282-25031584;Right=chr1:25034104-25034374
chr1	CG	SV	26362410	26363308	18	.	.	ID=4721;Type=deletion;Left=chr1:26362410-26362770+;Right=chr1:26362736-26363308+;Distance=326;DiscordantMatePairAlignments=18;LeftRepeat=L2:LINE:L2;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs70959243 (chr1:26362410-26362736);Frequency=1.00
chr1	CG	SV	26362410	26362770	18	+	.	ID=4721;Type=deletion;Left=chr1:26362410-26362770;Right=chr1:26362736-26363308
chr1	CG	SV	26362736	26363308	18	+	.	ID=4721;Type=deletion;Left=chr1:26362410-26362770;Right=chr1:26362736-26363308
chr1	CG	SV	29593140	30651857	43	.	.	ID=1299;Type=probable-inversion;Left=chr1:29593140-29593426-;Right=chr1:30651405-30651857+;Distance=1057979;DiscordantMatePairAlignments=43;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	29593140	29593426	43	-	.	ID=1299;Type=probable-inversion;Left=chr1:29593140-29593426;Right=chr1:30651405-30651857
chr1	CG	SV	30651405	30651857	43	-	.	ID=1299;Type=probable-inversion;Left=chr1:29593140-29593426;Right=chr1:30651405-30651857
chr1	CG	SV	31171979	31173046	25	.	.	ID=4718;Type=deletion;Left=chr1:31171979-31172315+;Right=chr1:31172691-31173046+;Distance=712;DiscordantMatePairAlignments=25;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	31171979	31172315	25	+	.	ID=4718;Type=deletion;Left=chr1:31171979-31172315;Right=chr1:31172691-31173046
chr1	CG	SV	31172691	31173046	25	+	.	ID=4718;Type=deletion;Left=chr1:31171979-31172315;Right=chr1:31172691-31173046
chr1	CG	SV	31743979	31744346	13	.	.	ID=1297;Type=probable-inversion;Left=chr1:31743979-31744128-;Right=chr1:31744235-31744346+;Distance=107;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	31743979	31744128	13	-	.	ID=1297;Type=probable-inversion;Left=chr1:31743979-31744128;Right=chr1:31744235-31744346
chr1	CG	SV	31744235	31744346	13	-	.	ID=1297;Type=probable-inversion;Left=chr1:31743979-31744128;Right=chr1:31744235-31744346
chr1	CG	SV	32965975	32968851	19	.	.	ID=1578;Type=tandem-duplication;Left=chr1:32965975-32966449-;Right=chr1:32968327-32968851-;Distance=2402;DiscordantMatePairAlignments=19;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSp:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	32965975	32966449	19	-	.	ID=1578;Type=tandem-duplication;Left=chr1:32965975-32966449;Right=chr1:32968327-32968851
chr1	CG	SV	32968327	32968851	19	-	.	ID=1578;Type=tandem-duplication;Left=chr1:32965975-32966449;Right=chr1:32968327-32968851
chr1	CG	SV	33288652	33288920	48	-	.	ID=1520;Type=interchromosomal;Left=chr1:33288652-33288920-;Right=chr7:24414730-24415236-;Distance=;DiscordantMatePairAlignments=48;LeftRepeat=MLT1J:LTR:MaLR;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	24414730	24415236	48	-	.	ID=1520;Type=interchromosomal;Left=chr1:33288652-33288920-;Right=chr7:24414730-24415236-;Distance=;DiscordantMatePairAlignments=48;LeftRepeat=MLT1J:LTR:MaLR;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	43831883	43832473	45	.	.	ID=4962;Type=probable-inversion;Left=chr1:43831883-43832348+;Right=chr1:43832099-43832473-;Distance=590;DiscordantMatePairAlignments=45;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_002840:+;NM_130440:+;RightGenes=NM_002840:+;NM_130440:+;XRef=;Frequency=0.94
chr1	CG	SV	43831883	43832348	45	+	.	ID=4962;Type=probable-inversion;Left=chr1:43831883-43832348;Right=chr1:43832099-43832473
chr1	CG	SV	43832099	43832473	45	+	.	ID=4962;Type=probable-inversion;Left=chr1:43831883-43832348;Right=chr1:43832099-43832473
chr1	CG	SV	45190218	45190805	12	.	.	ID=4712;Type=deletion;Left=chr1:45190218-45190653+;Right=chr1:45190530-45190805+;Distance=312;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;Tandem T;Tandem period 175;RightRepeat=AluSx:SINE:Alu;Tandem period 135;LeftGenes=NM_001166588:-;NM_020365:-;RightGenes=NM_001166588:-;NM_020365:-;XRef=;Frequency=0.53
chr1	CG	SV	45190218	45190653	12	+	.	ID=4712;Type=deletion;Left=chr1:45190218-45190653;Right=chr1:45190530-45190805
chr1	CG	SV	45190530	45190805	12	+	.	ID=4712;Type=deletion;Left=chr1:45190218-45190653;Right=chr1:45190530-45190805
chr1	CG	SV	56173881	56174652	10	.	.	ID=4710;Type=deletion;Left=chr1:56173881-56174183+;Right=chr1:56174202-56174652+;Distance=321;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10525686 (chr1:56173881-56174202);Frequency=1.00
chr1	CG	SV	56173881	56174183	10	+	.	ID=4710;Type=deletion;Left=chr1:56173881-56174183;Right=chr1:56174202-56174652
chr1	CG	SV	56174202	56174652	10	+	.	ID=4710;Type=deletion;Left=chr1:56173881-56174183;Right=chr1:56174202-56174652
chr1	CG	SV	56603708	56608016	136	.	.	ID=4709;Type=deletion;Left=chr1:56603708-56604182+;Right=chr1:56607563-56608016+;Distance=3855;DiscordantMatePairAlignments=136;LeftRepeat=;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr1	CG	SV	56603708	56604182	136	+	.	ID=4709;Type=deletion;Left=chr1:56603708-56604182;Right=chr1:56607563-56608016
chr1	CG	SV	56607563	56608016	136	+	.	ID=4709;Type=deletion;Left=chr1:56603708-56604182;Right=chr1:56607563-56608016
chr1	CG	SV	56768282	56768934	104	.	.	ID=1574;Type=tandem-duplication;Left=chr1:56768282-56768620-;Right=chr1:56768592-56768934-;Distance=314;DiscordantMatePairAlignments=104;LeftRepeat=;RightRepeat=;LeftGenes=NM_003713:-;NM_177414:-;RightGenes=NM_003713:-;NM_177414:-;XRef=;Frequency=0.71
chr1	CG	SV	56768282	56768620	104	-	.	ID=1574;Type=tandem-duplication;Left=chr1:56768282-56768620;Right=chr1:56768592-56768934
chr1	CG	SV	56768592	56768934	104	-	.	ID=1574;Type=tandem-duplication;Left=chr1:56768282-56768620;Right=chr1:56768592-56768934
chr1	CG	SV	57015213	57015963	17	.	.	ID=4708;Type=deletion;Left=chr1:57015213-57015653+;Right=chr1:57015552-57015963+;Distance=339;DiscordantMatePairAlignments=17;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=MIRb:SINE:MIR;LeftGenes=NM_001004303:-;RightGenes=NM_001004303:-;XRef=rs34032387 (chr1:57015213-57015552);Frequency=1.00
chr1	CG	SV	57015213	57015653	17	+	.	ID=4708;Type=deletion;Left=chr1:57015213-57015653;Right=chr1:57015552-57015963
chr1	CG	SV	57015552	57015963	17	+	.	ID=4708;Type=deletion;Left=chr1:57015213-57015653;Right=chr1:57015552-57015963
chr1	CG	SV	58516501	58517821	161	.	.	ID=4706;Type=deletion;Left=chr1:58516501-58516960+;Right=chr1:58517414-58517821+;Distance=913;DiscordantMatePairAlignments=161;LeftRepeat=THE1D:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67647148 (chr1:58516501-58517414);Frequency=1.00
chr1	CG	SV	58516501	58516960	161	+	.	ID=4706;Type=deletion;Left=chr1:58516501-58516960;Right=chr1:58517414-58517821
chr1	CG	SV	58517414	58517821	161	+	.	ID=4706;Type=deletion;Left=chr1:58516501-58516960;Right=chr1:58517414-58517821
chr1	CG	SV	62163190	62164020	39	.	.	ID=4705;Type=deletion;Left=chr1:62163190-62163647+;Right=chr1:62163539-62164020+;Distance=349;DiscordantMatePairAlignments=39;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_176877:+;RightGenes=NM_176877:+;XRef=rs6143236 (chr1:62163174-62163523);Frequency=1.00
chr1	CG	SV	62163190	62163647	39	+	.	ID=4705;Type=deletion;Left=chr1:62163190-62163647;Right=chr1:62163539-62164020
chr1	CG	SV	62163539	62164020	39	+	.	ID=4705;Type=deletion;Left=chr1:62163190-62163647;Right=chr1:62163539-62164020
chr1	CG	SV	62924423	62925113	28	.	.	ID=4704;Type=deletion;Left=chr1:62924423-62924929+;Right=chr1:62924762-62925113+;Distance=339;DiscordantMatePairAlignments=28;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_033407:-;RightGenes=NM_033407:-;XRef=rs66945421 (chr1:62924407-62924746);Frequency=1.00
chr1	CG	SV	62924423	62924929	28	+	.	ID=4704;Type=deletion;Left=chr1:62924423-62924929;Right=chr1:62924762-62925113
chr1	CG	SV	62924762	62925113	28	+	.	ID=4704;Type=deletion;Left=chr1:62924423-62924929;Right=chr1:62924762-62925113
chr1	CG	SV	63477950	63481141	151	.	.	ID=4703;Type=deletion;Left=chr1:63477950-63478439+;Right=chr1:63480740-63481141+;Distance=2790;DiscordantMatePairAlignments=151;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68164570 (chr1:63477954-63480744);Frequency=0.65
chr1	CG	SV	63477950	63478439	151	+	.	ID=4703;Type=deletion;Left=chr1:63477950-63478439;Right=chr1:63480740-63481141
chr1	CG	SV	63480740	63481141	151	+	.	ID=4703;Type=deletion;Left=chr1:63477950-63478439;Right=chr1:63480740-63481141
chr1	CG	SV	67780618	67781762	52	.	.	ID=4700;Type=deletion;Left=chr1:67780618-67781044+;Right=chr1:67781475-67781762+;Distance=857;DiscordantMatePairAlignments=52;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	67780618	67781044	52	+	.	ID=4700;Type=deletion;Left=chr1:67780618-67781044;Right=chr1:67781475-67781762
chr1	CG	SV	67781475	67781762	52	+	.	ID=4700;Type=deletion;Left=chr1:67780618-67781044;Right=chr1:67781475-67781762
chr1	CG	SV	70718793	70719523	16	.	.	ID=4698;Type=deletion;Left=chr1:70718793-70719370+;Right=chr1:70719124-70719523+;Distance=331;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;RightRepeat=L1MC5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs66657030 (chr1:70718793-70719124);Frequency=1.00
chr1	CG	SV	70718793	70719370	16	+	.	ID=4698;Type=deletion;Left=chr1:70718793-70719370;Right=chr1:70719124-70719523
chr1	CG	SV	70719124	70719523	16	+	.	ID=4698;Type=deletion;Left=chr1:70718793-70719370;Right=chr1:70719124-70719523
chr1	CG	SV	72528284	72537066	31	.	.	ID=4696;Type=deletion;Left=chr1:72528284-72528858+;Right=chr1:72536666-72537066+;Distance=8382;DiscordantMatePairAlignments=31;LeftRepeat=MLT2D:LTR:ERVL;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	72528284	72528858	31	+	.	ID=4696;Type=deletion;Left=chr1:72528284-72528858;Right=chr1:72536666-72537066
chr1	CG	SV	72536666	72537066	31	+	.	ID=4696;Type=deletion;Left=chr1:72528284-72528858;Right=chr1:72536666-72537066
chr1	CG	SV	72538912	72584909	125	.	.	ID=4695;Type=deletion;Left=chr1:72538912-72539340+;Right=chr1:72584428-72584909+;Distance=45516;DiscordantMatePairAlignments=125;LeftRepeat=;RightRepeat=MLT1E3:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	72538912	72539340	125	+	.	ID=4695;Type=deletion;Left=chr1:72538912-72539340;Right=chr1:72584428-72584909
chr1	CG	SV	72584428	72584909	125	+	.	ID=4695;Type=deletion;Left=chr1:72538912-72539340;Right=chr1:72584428-72584909
chr1	CG	SV	73526195	73526867	14	.	.	ID=4694;Type=deletion;Left=chr1:73526195-73526620+;Right=chr1:73526510-73526867+;Distance=315;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=L1M4b:LINE:L1;LeftGenes=;RightGenes=;XRef=rs70959273 (chr1:73526195-73526510);Frequency=1.00
chr1	CG	SV	73526195	73526620	14	+	.	ID=4694;Type=deletion;Left=chr1:73526195-73526620;Right=chr1:73526510-73526867
chr1	CG	SV	73526510	73526867	14	+	.	ID=4694;Type=deletion;Left=chr1:73526195-73526620;Right=chr1:73526510-73526867
chr1	CG	SV	73541385	73542119	10	.	.	ID=4693;Type=deletion;Left=chr1:73541385-73541800+;Right=chr1:73541736-73542119+;Distance=351;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67306227 (chr1:73541385-73541736);Frequency=0.88
chr1	CG	SV	73541385	73541800	10	+	.	ID=4693;Type=deletion;Left=chr1:73541385-73541800;Right=chr1:73541736-73542119
chr1	CG	SV	73541736	73542119	10	+	.	ID=4693;Type=deletion;Left=chr1:73541385-73541800;Right=chr1:73541736-73542119
chr1	CG	SV	79886773	79887495	13	.	.	ID=4682;Type=deletion;Left=chr1:79886773-79887221+;Right=chr1:79887090-79887495+;Distance=317;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs67395030 (chr1:79886773-79887090);Frequency=0.59
chr1	CG	SV	79886773	79887221	13	+	.	ID=4682;Type=deletion;Left=chr1:79886773-79887221;Right=chr1:79887090-79887495
chr1	CG	SV	79887090	79887495	13	+	.	ID=4682;Type=deletion;Left=chr1:79886773-79887221;Right=chr1:79887090-79887495
chr1	CG	SV	80567002	80568159	32	.	.	ID=673;Type=probable-inversion;Left=chr1:80567002-80567211-;Right=chr1:80567699-80568159+;Distance=488;DiscordantMatePairAlignments=32;LeftRepeat=L1MC:LINE:L1;RightRepeat=(TA)n:Simple_repeat:Simple_repeat;Tandem AC;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	80567002	80567211	32	-	.	ID=673;Type=probable-inversion;Left=chr1:80567002-80567211;Right=chr1:80567699-80568159
chr1	CG	SV	80567699	80568159	32	-	.	ID=673;Type=probable-inversion;Left=chr1:80567002-80567211;Right=chr1:80567699-80568159
chr1	CG	SV	80966941	80967683	12	.	.	ID=4681;Type=deletion;Left=chr1:80966941-80967358+;Right=chr1:80967268-80967683+;Distance=327;DiscordantMatePairAlignments=12;LeftRepeat=ERVL-E:LTR:ERVL;RightRepeat=ERVL-E:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	80966941	80967358	12	+	.	ID=4681;Type=deletion;Left=chr1:80966941-80967358;Right=chr1:80967268-80967683
chr1	CG	SV	80967268	80967683	12	+	.	ID=4681;Type=deletion;Left=chr1:80966941-80967358;Right=chr1:80967268-80967683
chr1	CG	SV	81177359	81184010	29	.	.	ID=4680;Type=deletion;Left=chr1:81177359-81177937+;Right=chr1:81183550-81184010+;Distance=6191;DiscordantMatePairAlignments=29;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=MSTD:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	81177359	81177937	29	+	.	ID=4680;Type=deletion;Left=chr1:81177359-81177937;Right=chr1:81183550-81184010
chr1	CG	SV	81183550	81184010	29	+	.	ID=4680;Type=deletion;Left=chr1:81177359-81177937;Right=chr1:81183550-81184010
chr1	CG	SV	81432939	81434143	65	.	.	ID=4961;Type=probable-inversion;Left=chr1:81432939-81433411+;Right=chr1:81433957-81434143-;Distance=1204;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=L1MD3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr1	CG	SV	81432939	81433411	65	+	.	ID=4961;Type=probable-inversion;Left=chr1:81432939-81433411;Right=chr1:81433957-81434143
chr1	CG	SV	81433957	81434143	65	+	.	ID=4961;Type=probable-inversion;Left=chr1:81432939-81433411;Right=chr1:81433957-81434143
chr1	CG	SV	82898564	82900630	112	.	.	ID=4678;Type=deletion;Left=chr1:82898564-82899029+;Right=chr1:82900175-82900630+;Distance=1611;DiscordantMatePairAlignments=112;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70959281 (chr1:82898546-82900157);Frequency=1.00
chr1	CG	SV	82898564	82899029	112	+	.	ID=4678;Type=deletion;Left=chr1:82898564-82899029;Right=chr1:82900175-82900630
chr1	CG	SV	82900175	82900630	112	+	.	ID=4678;Type=deletion;Left=chr1:82898564-82899029;Right=chr1:82900175-82900630
chr1	CG	SV	84290524	84297548	78	.	.	ID=4677;Type=deletion;Left=chr1:84290524-84290979+;Right=chr1:84297228-84297548+;Distance=6704;DiscordantMatePairAlignments=78;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66528373 (chr1:84290513-84297217);Frequency=1.00
chr1	CG	SV	84290524	84290979	78	+	.	ID=4677;Type=deletion;Left=chr1:84290524-84290979;Right=chr1:84297228-84297548
chr1	CG	SV	84297228	84297548	78	+	.	ID=4677;Type=deletion;Left=chr1:84290524-84290979;Right=chr1:84297228-84297548
chr1	CG	SV	85521222	85521990	42	.	.	ID=4676;Type=deletion;Left=chr1:85521222-85521817+;Right=chr1:85521552-85521990+;Distance=330;DiscordantMatePairAlignments=42;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67084614 (chr1:85521208-85521538);Frequency=0.94
chr1	CG	SV	85521222	85521817	42	+	.	ID=4676;Type=deletion;Left=chr1:85521222-85521817;Right=chr1:85521552-85521990
chr1	CG	SV	85521552	85521990	42	+	.	ID=4676;Type=deletion;Left=chr1:85521222-85521817;Right=chr1:85521552-85521990
chr1	CG	SV	86173439	86177543	129	.	.	ID=4675;Type=deletion;Left=chr1:86173439-86173820+;Right=chr1:86177126-86177543+;Distance=3687;DiscordantMatePairAlignments=129;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=LTR16A:LTR:ERVL;Self chain;LeftGenes=NM_152890:-;RightGenes=NM_152890:-;XRef=;Frequency=0.12
chr1	CG	SV	86173439	86173820	129	+	.	ID=4675;Type=deletion;Left=chr1:86173439-86173820;Right=chr1:86177126-86177543
chr1	CG	SV	86177126	86177543	129	+	.	ID=4675;Type=deletion;Left=chr1:86173439-86173820;Right=chr1:86177126-86177543
chr1	CG	SV	86178393	86179236	19	.	.	ID=4674;Type=deletion;Left=chr1:86178393-86178862+;Right=chr1:86178721-86179236+;Distance=328;DiscordantMatePairAlignments=19;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_152890:-;RightGenes=NM_152890:-;XRef=rs66578552 (chr1:86178378-86178706);Frequency=0.88
chr1	CG	SV	86178393	86178862	19	+	.	ID=4674;Type=deletion;Left=chr1:86178393-86178862;Right=chr1:86178721-86179236
chr1	CG	SV	86178721	86179236	19	+	.	ID=4674;Type=deletion;Left=chr1:86178393-86178862;Right=chr1:86178721-86179236
chr1	CG	SV	87689102	87689928	17	.	.	ID=1571;Type=tandem-duplication;Left=chr1:87689102-87689469-;Right=chr1:87689479-87689928-;Distance=459;DiscordantMatePairAlignments=17;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr1	CG	SV	87689102	87689469	17	-	.	ID=1571;Type=tandem-duplication;Left=chr1:87689102-87689469;Right=chr1:87689479-87689928
chr1	CG	SV	87689479	87689928	17	-	.	ID=1571;Type=tandem-duplication;Left=chr1:87689102-87689469;Right=chr1:87689479-87689928
chr1	CG	SV	89371762	89425150	13	.	.	ID=4672;Type=deletion;Left=chr1:89371762-89371952+;Right=chr1:89424837-89425150+;Distance=53075;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_207398:-;RightGenes=NM_052941:-;XRef=;Frequency=0.35
chr1	CG	SV	89371762	89371952	13	+	.	ID=4672;Type=deletion;Left=chr1:89371762-89371952;Right=chr1:89424837-89425150
chr1	CG	SV	89424837	89425150	13	+	.	ID=4672;Type=deletion;Left=chr1:89371762-89371952;Right=chr1:89424837-89425150
chr1	CG	SV	91686699	91687559	45	.	.	ID=4670;Type=deletion;Left=chr1:91686699-91687048+;Right=chr1:91687154-91687559+;Distance=455;DiscordantMatePairAlignments=45;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72186914 (chr1:91686699-91687153);Frequency=1.00
chr1	CG	SV	91686699	91687048	45	+	.	ID=4670;Type=deletion;Left=chr1:91686699-91687048;Right=chr1:91687154-91687559
chr1	CG	SV	91687154	91687559	45	+	.	ID=4670;Type=deletion;Left=chr1:91686699-91687048;Right=chr1:91687154-91687559
chr1	CG	SV	93034666	93035453	23	.	.	ID=671;Type=distal-duplication;Left=chr1:93034666-93034805-;Right=chr1:93035056-93035453+;Distance=251;DiscordantMatePairAlignments=23;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	93034666	93034805	23	-	.	ID=671;Type=distal-duplication;Left=chr1:93034666-93034805;Right=chr1:93035056-93035453
chr1	CG	SV	93035056	93035453	23	-	.	ID=671;Type=distal-duplication;Left=chr1:93034666-93034805;Right=chr1:93035056-93035453
chr1	CG	SV	93034861	93034944	12	.	.	ID=4960;Type=distal-duplication;Left=chr1:93034861-93035221+;Right=chr1:93034869-93034944-;Distance=83;DiscordantMatePairAlignments=12;LeftRepeat=AluJb:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	93034861	93035221	12	+	.	ID=4960;Type=distal-duplication;Left=chr1:93034861-93035221;Right=chr1:93034869-93034944
chr1	CG	SV	93034869	93034944	12	+	.	ID=4960;Type=distal-duplication;Left=chr1:93034861-93035221;Right=chr1:93034869-93034944
chr1	CG	SV	94060963	94064309	156	.	.	ID=4669;Type=deletion;Left=chr1:94060963-94061242+;Right=chr1:94063847-94064309+;Distance=2884;DiscordantMatePairAlignments=156;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68045023 (chr1:94060963-94063847);Frequency=0.82
chr1	CG	SV	94060963	94061242	156	+	.	ID=4669;Type=deletion;Left=chr1:94060963-94061242;Right=chr1:94063847-94064309
chr1	CG	SV	94063847	94064309	156	+	.	ID=4669;Type=deletion;Left=chr1:94060963-94061242;Right=chr1:94063847-94064309
chr1	CG	SV	102820280	102821008	24	.	.	ID=4667;Type=deletion;Left=chr1:102820280-102820746+;Right=chr1:102820610-102821008+;Distance=330;DiscordantMatePairAlignments=24;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66580034 (chr1:102820266-102820596);Frequency=1.00
chr1	CG	SV	102820280	102820746	24	+	.	ID=4667;Type=deletion;Left=chr1:102820280-102820746;Right=chr1:102820610-102821008
chr1	CG	SV	102820610	102821008	24	+	.	ID=4667;Type=deletion;Left=chr1:102820280-102820746;Right=chr1:102820610-102821008
chr1	CG	SV	102868668	102869410	14	.	.	ID=4666;Type=deletion;Left=chr1:102868668-102869133+;Right=chr1:102868987-102869410+;Distance=319;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6143346 (chr1:102868653-102868972);Frequency=1.00
chr1	CG	SV	102868668	102869133	14	+	.	ID=4666;Type=deletion;Left=chr1:102868668-102869133;Right=chr1:102868987-102869410
chr1	CG	SV	102868987	102869410	14	+	.	ID=4666;Type=deletion;Left=chr1:102868668-102869133;Right=chr1:102868987-102869410
chr1	CG	SV	104244722	104245699	65	.	.	ID=4665;Type=deletion;Left=chr1:104244722-104245187+;Right=chr1:104245248-104245699+;Distance=526;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66586618 (chr1:104244722-104245248);Frequency=0.76
chr1	CG	SV	104244722	104245187	65	+	.	ID=4665;Type=deletion;Left=chr1:104244722-104245187;Right=chr1:104245248-104245699
chr1	CG	SV	104245248	104245699	65	+	.	ID=4665;Type=deletion;Left=chr1:104244722-104245187;Right=chr1:104245248-104245699
chr1	CG	SV	105056556	105058116	60	.	.	ID=4664;Type=deletion;Left=chr1:105056556-105056904+;Right=chr1:105057712-105058116+;Distance=1156;DiscordantMatePairAlignments=60;LeftRepeat=(CATATA)n:Simple_repeat:Simple_repeat;Tandem AT;Tandem ATATAC;Tandem period 8;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	105056556	105056904	60	+	.	ID=4664;Type=deletion;Left=chr1:105056556-105056904;Right=chr1:105057712-105058116
chr1	CG	SV	105057712	105058116	60	+	.	ID=4664;Type=deletion;Left=chr1:105056556-105056904;Right=chr1:105057712-105058116
chr1	CG	SV	109399227	109400014	10	.	.	ID=4663;Type=deletion;Left=chr1:109399227-109399355+;Right=chr1:109399563-109400014+;Distance=336;DiscordantMatePairAlignments=10;LeftRepeat=FLAM_C:SINE:Alu;Self chain;Tandem T;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	109399227	109399355	10	+	.	ID=4663;Type=deletion;Left=chr1:109399227-109399355;Right=chr1:109399563-109400014
chr1	CG	SV	109399563	109400014	10	+	.	ID=4663;Type=deletion;Left=chr1:109399227-109399355;Right=chr1:109399563-109400014
chr1	CG	SV	109988719	109993073	14	.	.	ID=4662;Type=deletion;Left=chr1:109988719-109989240+;Right=chr1:109992951-109993073+;Distance=4232;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr1	CG	SV	109988719	109989240	14	+	.	ID=4662;Type=deletion;Left=chr1:109988719-109989240;Right=chr1:109992951-109993073
chr1	CG	SV	109992951	109993073	14	+	.	ID=4662;Type=deletion;Left=chr1:109988719-109989240;Right=chr1:109992951-109993073
chr1	CG	SV	112493315	112506668	38	.	.	ID=4661;Type=deletion;Left=chr1:112493315-112493726+;Right=chr1:112506228-112506668+;Distance=12913;DiscordantMatePairAlignments=38;LeftRepeat=MLT1B-int:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	112493315	112493726	38	+	.	ID=4661;Type=deletion;Left=chr1:112493315-112493726;Right=chr1:112506228-112506668
chr1	CG	SV	112506228	112506668	38	+	.	ID=4661;Type=deletion;Left=chr1:112493315-112493726;Right=chr1:112506228-112506668
chr1	CG	SV	114447402	114456344	23	.	.	ID=670;Type=probable-inversion;Left=chr1:114447402-114447477-;Right=chr1:114455894-114456344+;Distance=8417;DiscordantMatePairAlignments=23;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_205848:-;RightGenes=NM_205848:-;XRef=;Frequency=0.76
chr1	CG	SV	114447402	114447477	23	-	.	ID=670;Type=probable-inversion;Left=chr1:114447402-114447477;Right=chr1:114455894-114456344
chr1	CG	SV	114455894	114456344	23	-	.	ID=670;Type=probable-inversion;Left=chr1:114447402-114447477;Right=chr1:114455894-114456344
chr1	CG	SV	141477095	141479120	15	.	.	ID=4656;Type=deletion;Left=chr1:141477095-141477172+;Right=chr1:141478796-141479120+;Distance=1701;DiscordantMatePairAlignments=15;LeftRepeat=AluJ/FRAM:SINE:Alu;Self chain;RightRepeat=AluJ/FRAM:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	141477095	141477172	15	+	.	ID=4656;Type=deletion;Left=chr1:141477095-141477172;Right=chr1:141478796-141479120
chr1	CG	SV	141478796	141479120	15	+	.	ID=4656;Type=deletion;Left=chr1:141477095-141477172;Right=chr1:141478796-141479120
chr1	CG	SV	143605644	143606809	32	.	.	ID=4654;Type=deletion;Left=chr1:143605644-143606068+;Right=chr1:143606642-143606809+;Distance=998;DiscordantMatePairAlignments=32;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;RightGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;XRef=rs68115952 (chr1:143605449-143606445);Frequency=1.00
chr1	CG	SV	143605644	143606068	32	+	.	ID=4654;Type=deletion;Left=chr1:143605644-143606068;Right=chr1:143606642-143606809
chr1	CG	SV	143606642	143606809	32	+	.	ID=4654;Type=deletion;Left=chr1:143605644-143606068;Right=chr1:143606642-143606809
chr1	CG	SV	143607654	143618444	20	.	.	ID=4652;Type=deletion;Left=chr1:143607654-143607898+;Right=chr1:143618166-143618444+;Distance=10512;DiscordantMatePairAlignments=20;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;RightGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;XRef=;Frequency=1.00
chr1	CG	SV	143607654	143607898	20	+	.	ID=4652;Type=deletion;Left=chr1:143607654-143607898;Right=chr1:143618166-143618444
chr1	CG	SV	143618166	143618444	20	+	.	ID=4652;Type=deletion;Left=chr1:143607654-143607898;Right=chr1:143618166-143618444
chr1	CG	SV	143738103	143738850	27	.	.	ID=4650;Type=deletion;Left=chr1:143738103-143738585+;Right=chr1:143738426-143738850+;Distance=323;DiscordantMatePairAlignments=27;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_022359:-;RightGenes=NM_022359:-;XRef=rs67897961 (chr1:143738086-143738409);Frequency=1.00
chr1	CG	SV	143738103	143738585	27	+	.	ID=4650;Type=deletion;Left=chr1:143738103-143738585;Right=chr1:143738426-143738850
chr1	CG	SV	143738426	143738850	27	+	.	ID=4650;Type=deletion;Left=chr1:143738103-143738585;Right=chr1:143738426-143738850
chr1	CG	SV	143804305	143808878	417	.	.	ID=4649;Type=deletion;Left=chr1:143804305-143804836+;Right=chr1:143808440-143808878+;Distance=4135;DiscordantMatePairAlignments=417;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_004892:+;XRef=rs67330508 (chr1:143804305-143808439);Frequency=1.00
chr1	CG	SV	143804305	143804836	417	+	.	ID=4649;Type=deletion;Left=chr1:143804305-143804836;Right=chr1:143808440-143808878
chr1	CG	SV	143808440	143808878	417	+	.	ID=4649;Type=deletion;Left=chr1:143804305-143804836;Right=chr1:143808440-143808878
chr1	CG	SV	148958075	148958910	16	.	.	ID=4648;Type=deletion;Left=chr1:148958075-148958553+;Right=chr1:148958409-148958910+;Distance=334;DiscordantMatePairAlignments=16;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_032132:-;RightGenes=NM_032132:-;XRef=rs71739212 (chr1:148958059-148958393);Frequency=1.00
chr1	CG	SV	148958075	148958553	16	+	.	ID=4648;Type=deletion;Left=chr1:148958075-148958553;Right=chr1:148958409-148958910
chr1	CG	SV	148958409	148958910	16	+	.	ID=4648;Type=deletion;Left=chr1:148958075-148958553;Right=chr1:148958409-148958910
chr1	CG	SV	154110893	154111815	18	.	.	ID=4646;Type=deletion;Left=chr1:154110893-154111246+;Right=chr1:154111641-154111815+;Distance=748;DiscordantMatePairAlignments=18;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_152280:+;RightGenes=NM_152280:+;XRef=rs72087925 (chr1:154110887-154111635);Frequency=0.35
chr1	CG	SV	154110893	154111246	18	+	.	ID=4646;Type=deletion;Left=chr1:154110893-154111246;Right=chr1:154111641-154111815
chr1	CG	SV	154111641	154111815	18	+	.	ID=4646;Type=deletion;Left=chr1:154110893-154111246;Right=chr1:154111641-154111815
chr1	CG	SV	154793335	154796106	310	.	.	ID=4645;Type=deletion;Left=chr1:154793335-154793817+;Right=chr1:154795566-154796106+;Distance=2231;DiscordantMatePairAlignments=310;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_178229:-;RightGenes=NM_178229:-;XRef=rs68110015 (chr1:154793347-154795578);Frequency=1.00
chr1	CG	SV	154793335	154793817	310	+	.	ID=4645;Type=deletion;Left=chr1:154793335-154793817;Right=chr1:154795566-154796106
chr1	CG	SV	154795566	154796106	310	+	.	ID=4645;Type=deletion;Left=chr1:154793335-154793817;Right=chr1:154795566-154796106
chr1	CG	SV	155440488	155442319	28	.	.	ID=4644;Type=deletion;Left=chr1:155440488-155440889+;Right=chr1:155442020-155442319+;Distance=1532;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr1	CG	SV	155440488	155440889	28	+	.	ID=4644;Type=deletion;Left=chr1:155440488-155440889;Right=chr1:155442020-155442319
chr1	CG	SV	155442020	155442319	28	+	.	ID=4644;Type=deletion;Left=chr1:155440488-155440889;Right=chr1:155442020-155442319
chr1	CG	SV	157134157	157137031	29	.	.	ID=4643;Type=deletion;Left=chr1:157134157-157134535+;Right=chr1:157136608-157137031+;Distance=2451;DiscordantMatePairAlignments=29;LeftRepeat=L1MA9:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71810370 (chr1:157134157-157136608);Frequency=1.00
chr1	CG	SV	157134157	157134535	29	+	.	ID=4643;Type=deletion;Left=chr1:157134157-157134535;Right=chr1:157136608-157137031
chr1	CG	SV	157136608	157137031	29	+	.	ID=4643;Type=deletion;Left=chr1:157134157-157134535;Right=chr1:157136608-157137031
chr1	CG	SV	157915332	157916523	98	.	.	ID=4641;Type=deletion;Left=chr1:157915332-157915777+;Right=chr1:157916282-157916523+;Distance=950;DiscordantMatePairAlignments=98;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67706473 (chr1:157915331-157916281);Frequency=0.88
chr1	CG	SV	157915332	157915777	98	+	.	ID=4641;Type=deletion;Left=chr1:157915332-157915777;Right=chr1:157916282-157916523
chr1	CG	SV	157916282	157916523	98	+	.	ID=4641;Type=deletion;Left=chr1:157915332-157915777;Right=chr1:157916282-157916523
chr1	CG	SV	160319304	160320158	12	.	.	ID=4640;Type=deletion;Left=chr1:160319304-160319601+;Right=chr1:160319624-160320158+;Distance=320;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_001164757:+;NM_014697:+;RightGenes=NM_001164757:+;NM_014697:+;XRef=rs70942830 (chr1:160319304-160319624);Frequency=1.00
chr1	CG	SV	160319304	160319601	12	+	.	ID=4640;Type=deletion;Left=chr1:160319304-160319601;Right=chr1:160319624-160320158
chr1	CG	SV	160319624	160320158	12	+	.	ID=4640;Type=deletion;Left=chr1:160319304-160319601;Right=chr1:160319624-160320158
chr1	CG	SV	175654761	175655191	28	.	.	ID=1546;Type=tandem-duplication;Left=chr1:175654761-175654988-;Right=chr1:175654965-175655191-;Distance=203;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	175654761	175654988	28	-	.	ID=1546;Type=tandem-duplication;Left=chr1:175654761-175654988;Right=chr1:175654965-175655191
chr1	CG	SV	175654965	175655191	28	-	.	ID=1546;Type=tandem-duplication;Left=chr1:175654761-175654988;Right=chr1:175654965-175655191
chr1	CG	SV	177722216	177725212	11	.	.	ID=4194;Type=deletion;Left=chr1:177722216-177722458+;Right=chr1:177724918-177725212+;Distance=2702;DiscordantMatePairAlignments=11;LeftRepeat=L1PA13:LINE:L1;RightRepeat=Charlie7:DNA:MER1_type;LeftGenes=NM_144696:+;NM_182766:+;RightGenes=NM_144696:+;NM_182766:+;XRef=;Frequency=0.12
chr1	CG	SV	177722216	177722458	11	+	.	ID=4194;Type=deletion;Left=chr1:177722216-177722458;Right=chr1:177724918-177725212
chr1	CG	SV	177724918	177725212	11	+	.	ID=4194;Type=deletion;Left=chr1:177722216-177722458;Right=chr1:177724918-177725212
chr1	CG	SV	178450466	178450986	18	.	.	ID=4193;Type=deletion;Left=chr1:178450466-178451022+;Right=chr1:178450785-178450986+;Distance=319;DiscordantMatePairAlignments=18;LeftRepeat=AluYh9:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71879682 (chr1:178450365-178450686);Frequency=1.00
chr1	CG	SV	178450466	178451022	18	+	.	ID=4193;Type=deletion;Left=chr1:178450466-178451022;Right=chr1:178450785-178450986
chr1	CG	SV	178450785	178450986	18	+	.	ID=4193;Type=deletion;Left=chr1:178450466-178451022;Right=chr1:178450785-178450986
chr1	CG	SV	183081352	183087838	133	.	.	ID=4192;Type=deletion;Left=chr1:183081352-183081827+;Right=chr1:183087408-183087838+;Distance=6056;DiscordantMatePairAlignments=133;LeftRepeat=FLAM_C:SINE:Alu;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=NM_052966:-;RightGenes=NM_052966:-;XRef=rs67214927 (chr1:183081351-183087407);Frequency=0.59
chr1	CG	SV	183081352	183081827	133	+	.	ID=4192;Type=deletion;Left=chr1:183081352-183081827;Right=chr1:183087408-183087838
chr1	CG	SV	183087408	183087838	133	+	.	ID=4192;Type=deletion;Left=chr1:183081352-183081827;Right=chr1:183087408-183087838
chr1	CG	SV	183203676	183204424	15	.	.	ID=4191;Type=deletion;Left=chr1:183203676-183204159+;Right=chr1:183203998-183204424+;Distance=322;DiscordantMatePairAlignments=15;LeftRepeat=AluYb9:SINE:Alu;RightRepeat=;LeftGenes=NM_052966:-;RightGenes=NM_052966:-;XRef=rs66682744 (chr1:183203660-183203982);Frequency=1.00
chr1	CG	SV	183203676	183204159	15	+	.	ID=4191;Type=deletion;Left=chr1:183203676-183204159;Right=chr1:183203998-183204424
chr1	CG	SV	183203998	183204424	15	+	.	ID=4191;Type=deletion;Left=chr1:183203676-183204159;Right=chr1:183203998-183204424
chr1	CG	SV	185731451	185733350	48	.	.	ID=4920;Type=complex;Left=chr1:185731451-185731902+;Right=chr1:185733095-185733350-;Distance=1899;DiscordantMatePairAlignments=48;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185731451	185731902	48	+	.	ID=4920;Type=complex;Left=chr1:185731451-185731902;Right=chr1:185733095-185733350
chr1	CG	SV	185733095	185733350	48	+	.	ID=4920;Type=complex;Left=chr1:185731451-185731902;Right=chr1:185733095-185733350
chr1	CG	SV	185731451	185733540	26	.	.	ID=4190;Type=complex;Left=chr1:185731451-185731563+;Right=chr1:185733347-185733540+;Distance=1896;DiscordantMatePairAlignments=26;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185731451	185731563	26	+	.	ID=4190;Type=complex;Left=chr1:185731451-185731563;Right=chr1:185733347-185733540
chr1	CG	SV	185733347	185733540	26	+	.	ID=4190;Type=complex;Left=chr1:185731451-185731563;Right=chr1:185733347-185733540
chr1	CG	SV	185732846	185733790	120	.	.	ID=642;Type=complex;Left=chr1:185732846-185733098-;Right=chr1:185733355-185733790+;Distance=257;DiscordantMatePairAlignments=120;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185732846	185733098	120	-	.	ID=642;Type=complex;Left=chr1:185732846-185733098;Right=chr1:185733355-185733790
chr1	CG	SV	185733355	185733790	120	-	.	ID=642;Type=complex;Left=chr1:185732846-185733098;Right=chr1:185733355-185733790
chr1	CG	SV	185982729	185989530	75	.	.	ID=4189;Type=deletion;Left=chr1:185982729-185983159+;Right=chr1:185989157-185989530+;Distance=6428;DiscordantMatePairAlignments=75;LeftRepeat=LTR52-int:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	185982729	185983159	75	+	.	ID=4189;Type=deletion;Left=chr1:185982729-185983159;Right=chr1:185989157-185989530
chr1	CG	SV	185989157	185989530	75	+	.	ID=4189;Type=deletion;Left=chr1:185982729-185983159;Right=chr1:185989157-185989530
chr1	CG	SV	186806079	186807287	119	.	.	ID=4188;Type=deletion;Left=chr1:186806079-186806478+;Right=chr1:186806854-186807287+;Distance=775;DiscordantMatePairAlignments=119;LeftRepeat=L1MB7:LINE:L1;RightRepeat=L1MCa:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67158349 (chr1:186806079-186806854);Frequency=1.00
chr1	CG	SV	186806079	186806478	119	+	.	ID=4188;Type=deletion;Left=chr1:186806079-186806478;Right=chr1:186806854-186807287
chr1	CG	SV	186806854	186807287	119	+	.	ID=4188;Type=deletion;Left=chr1:186806079-186806478;Right=chr1:186806854-186807287
chr1	CG	SV	187467473	187468681	19	.	.	ID=4179;Type=deletion;Left=chr1:187467473-187467829+;Right=chr1:187468454-187468681+;Distance=981;DiscordantMatePairAlignments=19;LeftRepeat=;RightRepeat=L1P5:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	187467473	187467829	19	+	.	ID=4179;Type=deletion;Left=chr1:187467473-187467829;Right=chr1:187468454-187468681
chr1	CG	SV	187468454	187468681	19	+	.	ID=4179;Type=deletion;Left=chr1:187467473-187467829;Right=chr1:187468454-187468681
chr1	CG	SV	192905149	192905708	15	.	.	ID=641;Type=probable-inversion;Left=chr1:192905149-192905241-;Right=chr1:192905355-192905708+;Distance=114;DiscordantMatePairAlignments=15;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	192905149	192905241	15	-	.	ID=641;Type=probable-inversion;Left=chr1:192905149-192905241;Right=chr1:192905355-192905708
chr1	CG	SV	192905355	192905708	15	-	.	ID=641;Type=probable-inversion;Left=chr1:192905149-192905241;Right=chr1:192905355-192905708
chr1	CG	SV	195767142	195770319	156	.	.	ID=4178;Type=deletion;Left=chr1:195767142-195767639+;Right=chr1:195769905-195770319+;Distance=2763;DiscordantMatePairAlignments=156;LeftRepeat=L1HS:LINE:L1;Tandem T;RightRepeat=L1HS:LINE:L1;LeftGenes=NM_001142795:-;RightGenes=NM_001142795:-;XRef=rs68001128 (chr1:195767143-195769906);Frequency=1.00
chr1	CG	SV	195767142	195767639	156	+	.	ID=4178;Type=deletion;Left=chr1:195767142-195767639;Right=chr1:195769905-195770319
chr1	CG	SV	195769905	195770319	156	+	.	ID=4178;Type=deletion;Left=chr1:195767142-195767639;Right=chr1:195769905-195770319
chr1	CG	SV	196571279	196577307	44	.	.	ID=4176;Type=deletion;Left=chr1:196571279-196571669+;Right=chr1:196576904-196577307+;Distance=5625;DiscordantMatePairAlignments=44;LeftRepeat=L1PA12:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr1	CG	SV	196571279	196571669	44	+	.	ID=4176;Type=deletion;Left=chr1:196571279-196571669;Right=chr1:196576904-196577307
chr1	CG	SV	196576904	196577307	44	+	.	ID=4176;Type=deletion;Left=chr1:196571279-196571669;Right=chr1:196576904-196577307
chr1	CG	SV	197705366	197707269	79	.	.	ID=4174;Type=deletion;Left=chr1:197705366-197705806+;Right=chr1:197706873-197707269+;Distance=1507;DiscordantMatePairAlignments=79;LeftRepeat=L1HS:LINE:L1;RightRepeat=MLT1A1:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67023442 (chr1:197705349-197706856);Frequency=1.00
chr1	CG	SV	197705366	197705806	79	+	.	ID=4174;Type=deletion;Left=chr1:197705366-197705806;Right=chr1:197706873-197707269
chr1	CG	SV	197706873	197707269	79	+	.	ID=4174;Type=deletion;Left=chr1:197705366-197705806;Right=chr1:197706873-197707269
chr1	CG	SV	203445294	203445416	41	.	.	ID=4919;Type=probable-inversion;Left=chr1:203445294-203445788+;Right=chr1:203445266-203445416-;Distance=122;DiscordantMatePairAlignments=41;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_015375:-;NM_199462:-;RightGenes=NM_015375:-;NM_199462:-;XRef=;Frequency=0.88
chr1	CG	SV	203445294	203445788	41	+	.	ID=4919;Type=probable-inversion;Left=chr1:203445294-203445788;Right=chr1:203445266-203445416
chr1	CG	SV	203445266	203445416	41	+	.	ID=4919;Type=probable-inversion;Left=chr1:203445294-203445788;Right=chr1:203445266-203445416
chr1	CG	SV	205358985	205360097	27	.	.	ID=4173;Type=deletion;Left=chr1:205358985-205359288+;Right=chr1:205359818-205360097+;Distance=833;DiscordantMatePairAlignments=27;LeftRepeat=MLT2F:LTR:ERVL;Self chain;RightRepeat=ERVL-F:LTR:ERVL;Self chain;LeftGenes=NM_000715:+;RightGenes=NM_000715:+;XRef=;Frequency=0.94
chr1	CG	SV	205358985	205359288	27	+	.	ID=4173;Type=deletion;Left=chr1:205358985-205359288;Right=chr1:205359818-205360097
chr1	CG	SV	205359818	205360097	27	+	.	ID=4173;Type=deletion;Left=chr1:205358985-205359288;Right=chr1:205359818-205360097
chr1	CG	SV	205608643	205612680	103	.	.	ID=4172;Type=deletion;Left=chr1:205608643-205609078+;Right=chr1:205612244-205612680+;Distance=3601;DiscordantMatePairAlignments=103;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66713152 (chr1:205608586-205612187);Frequency=0.59
chr1	CG	SV	205608643	205609078	103	+	.	ID=4172;Type=deletion;Left=chr1:205608643-205609078;Right=chr1:205612244-205612680
chr1	CG	SV	205612244	205612680	103	+	.	ID=4172;Type=deletion;Left=chr1:205608643-205609078;Right=chr1:205612244-205612680
chr1	CG	SV	208144678	208153084	182	.	.	ID=4171;Type=deletion;Left=chr1:208144678-208145069+;Right=chr1:208152600-208153084+;Distance=7922;DiscordantMatePairAlignments=182;LeftRepeat=;RightRepeat=HERVL:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs66502507 (chr1:208144678-208152594);Frequency=0.53
chr1	CG	SV	208144678	208145069	182	+	.	ID=4171;Type=deletion;Left=chr1:208144678-208145069;Right=chr1:208152600-208153084
chr1	CG	SV	208152600	208153084	182	+	.	ID=4171;Type=deletion;Left=chr1:208144678-208145069;Right=chr1:208152600-208153084
chr1	CG	SV	208893708	208894171	18	.	.	ID=1545;Type=tandem-duplication;Left=chr1:208893708-208893848-;Right=chr1:208894099-208894171-;Distance=323;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;Tandem period 14;Tandem period 30;RightRepeat=Self chain;Tandem period 14;Tandem period 30;LeftGenes=NM_001122834:+;NM_018194:+;RightGenes=NM_001122834:+;NM_018194:+;XRef=;Frequency=1.00
chr1	CG	SV	208893708	208893848	18	-	.	ID=1545;Type=tandem-duplication;Left=chr1:208893708-208893848;Right=chr1:208894099-208894171
chr1	CG	SV	208894099	208894171	18	-	.	ID=1545;Type=tandem-duplication;Left=chr1:208893708-208893848;Right=chr1:208894099-208894171
chr1	CG	SV	210537769	210539686	107	.	.	ID=4169;Type=deletion;Left=chr1:210537769-210538172+;Right=chr1:210539250-210539686+;Distance=1481;DiscordantMatePairAlignments=107;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_006243:+;RightGenes=NM_006243:+;XRef=rs67390846 (chr1:210537758-210539239);Frequency=0.88
chr1	CG	SV	210537769	210538172	107	+	.	ID=4169;Type=deletion;Left=chr1:210537769-210538172;Right=chr1:210539250-210539686
chr1	CG	SV	210539250	210539686	107	+	.	ID=4169;Type=deletion;Left=chr1:210537769-210538172;Right=chr1:210539250-210539686
chr1	CG	SV	216249125	216255604	65	.	.	ID=4166;Type=deletion;Left=chr1:216249125-216249429+;Right=chr1:216255231-216255604+;Distance=6106;DiscordantMatePairAlignments=65;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	216249125	216249429	65	+	.	ID=4166;Type=deletion;Left=chr1:216249125-216249429;Right=chr1:216255231-216255604
chr1	CG	SV	216255231	216255604	65	+	.	ID=4166;Type=deletion;Left=chr1:216249125-216249429;Right=chr1:216255231-216255604
chr1	CG	SV	216312261	216313476	46	.	.	ID=4165;Type=deletion;Left=chr1:216312261-216312493+;Right=chr1:216313122-216313476+;Distance=861;DiscordantMatePairAlignments=46;LeftRepeat=L1HS:LINE:L1;RightRepeat=MER45B:DNA:Tip100;LeftGenes=;RightGenes=;XRef=rs70942859 (chr1:216312261-216313122);Frequency=0.94
chr1	CG	SV	216312261	216312493	46	+	.	ID=4165;Type=deletion;Left=chr1:216312261-216312493;Right=chr1:216313122-216313476
chr1	CG	SV	216313122	216313476	46	+	.	ID=4165;Type=deletion;Left=chr1:216312261-216312493;Right=chr1:216313122-216313476
chr1	CG	SV	216852553	216853321	29	.	.	ID=4164;Type=deletion;Left=chr1:216852553-216853033+;Right=chr1:216852873-216853321+;Distance=320;DiscordantMatePairAlignments=29;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	216852553	216853033	29	+	.	ID=4164;Type=deletion;Left=chr1:216852553-216853033;Right=chr1:216852873-216853321
chr1	CG	SV	216852873	216853321	29	+	.	ID=4164;Type=deletion;Left=chr1:216852553-216853033;Right=chr1:216852873-216853321
chr1	CG	SV	217989946	217990689	21	.	.	ID=4163;Type=deletion;Left=chr1:217989946-217990421+;Right=chr1:217990264-217990689+;Distance=318;DiscordantMatePairAlignments=21;LeftRepeat=AluY:SINE:Alu;RightRepeat=MER44C:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=rs10522402 (chr1:217989931-217990249);Frequency=0.82
chr1	CG	SV	217989946	217990421	21	+	.	ID=4163;Type=deletion;Left=chr1:217989946-217990421;Right=chr1:217990264-217990689
chr1	CG	SV	217990264	217990689	21	+	.	ID=4163;Type=deletion;Left=chr1:217989946-217990421;Right=chr1:217990264-217990689
chr1	CG	SV	220100781	220101531	18	.	.	ID=4162;Type=deletion;Left=chr1:220100781-220101194+;Right=chr1:220101113-220101531+;Distance=332;DiscordantMatePairAlignments=18;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68091096 (chr1:220100781-220101113);Frequency=0.94
chr1	CG	SV	220100781	220101194	18	+	.	ID=4162;Type=deletion;Left=chr1:220100781-220101194;Right=chr1:220101113-220101531
chr1	CG	SV	220101113	220101531	18	+	.	ID=4162;Type=deletion;Left=chr1:220100781-220101194;Right=chr1:220101113-220101531
chr1	CG	SV	220440788	220447457	38	.	.	ID=4161;Type=deletion;Left=chr1:220440788-220441252+;Right=chr1:220447162-220447457+;Distance=6374;DiscordantMatePairAlignments=38;LeftRepeat=AluSg:SINE:Alu;RightRepeat=L1PA17:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	220440788	220441252	38	+	.	ID=4161;Type=deletion;Left=chr1:220440788-220441252;Right=chr1:220447162-220447457
chr1	CG	SV	220447162	220447457	38	+	.	ID=4161;Type=deletion;Left=chr1:220440788-220441252;Right=chr1:220447162-220447457
chr1	CG	SV	221270490	221270911	97	-	.	ID=499;Type=interchromosomal;Left=chr1:221270490-221270911-;Right=chr15:63333071-63333527+;Distance=;DiscordantMatePairAlignments=97;LeftRepeat=MER5B:DNA:MER1_type;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	63333071	63333527	97	-	.	ID=499;Type=interchromosomal;Left=chr1:221270490-221270911-;Right=chr15:63333071-63333527+;Distance=;DiscordantMatePairAlignments=97;LeftRepeat=MER5B:DNA:MER1_type;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	222313733	222314638	348	.	.	ID=4160;Type=deletion;Left=chr1:222313733-222314261+;Right=chr1:222314209-222314638+;Distance=476;DiscordantMatePairAlignments=348;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67408596 (chr1:222313740-222314216);Frequency=1.00
chr1	CG	SV	222313733	222314261	348	+	.	ID=4160;Type=deletion;Left=chr1:222313733-222314261;Right=chr1:222314209-222314638
chr1	CG	SV	222314209	222314638	348	+	.	ID=4160;Type=deletion;Left=chr1:222313733-222314261;Right=chr1:222314209-222314638
chr1	CG	SV	222459457	222460173	33	.	.	ID=4158;Type=complex;Left=chr1:222459457-222460018+;Right=chr1:222459770-222460173+;Distance=313;DiscordantMatePairAlignments=33;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67571921 (chr1:222459444-222459757);Frequency=1.00
chr1	CG	SV	222459457	222460018	33	+	.	ID=4158;Type=complex;Left=chr1:222459457-222460018;Right=chr1:222459770-222460173
chr1	CG	SV	222459770	222460173	33	+	.	ID=4158;Type=complex;Left=chr1:222459457-222460018;Right=chr1:222459770-222460173
chr1	CG	SV	222459457	222460303	42	.	.	ID=4159;Type=complex;Left=chr1:222459457-222459839+;Right=chr1:222459770-222460303+;Distance=313;DiscordantMatePairAlignments=42;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10525121 (chr1:222459457-222459770);Frequency=1.00
chr1	CG	SV	222459457	222459839	42	+	.	ID=4159;Type=complex;Left=chr1:222459457-222459839;Right=chr1:222459770-222460303
chr1	CG	SV	222459770	222460303	42	+	.	ID=4159;Type=complex;Left=chr1:222459457-222459839;Right=chr1:222459770-222460303
chr1	CG	SV	223828944	223829499	22	.	.	ID=4157;Type=deletion;Left=chr1:223828944-223829409+;Right=chr1:223829262-223829499+;Distance=318;DiscordantMatePairAlignments=22;LeftRepeat=AluY:SINE:Alu;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=NM_001008493:-;NM_018212:-;RightGenes=NM_001008493:-;NM_018212:-;XRef=;Frequency=1.00
chr1	CG	SV	223828944	223829409	22	+	.	ID=4157;Type=deletion;Left=chr1:223828944-223829409;Right=chr1:223829262-223829499
chr1	CG	SV	223829262	223829499	22	+	.	ID=4157;Type=deletion;Left=chr1:223828944-223829409;Right=chr1:223829262-223829499
chr1	CG	SV	224069440	224070211	76	.	.	ID=4156;Type=deletion;Left=chr1:224069440-224069844+;Right=chr1:224069767-224070211+;Distance=327;DiscordantMatePairAlignments=76;LeftRepeat=;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_001136018:+;RightGenes=NM_001136018:+;XRef=;Frequency=0.35
chr1	CG	SV	224069440	224069844	76	+	.	ID=4156;Type=deletion;Left=chr1:224069440-224069844;Right=chr1:224069767-224070211
chr1	CG	SV	224069767	224070211	76	+	.	ID=4156;Type=deletion;Left=chr1:224069440-224069844;Right=chr1:224069767-224070211
chr1	CG	SV	227440011	227440757	59	.	.	ID=4152;Type=deletion;Left=chr1:227440011-227440464+;Right=chr1:227440385-227440757+;Distance=374;DiscordantMatePairAlignments=59;LeftRepeat=L1ME4a:LINE:L1;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71748063 (chr1:227440011-227440385);Frequency=0.59
chr1	CG	SV	227440011	227440464	59	+	.	ID=4152;Type=deletion;Left=chr1:227440011-227440464;Right=chr1:227440385-227440757
chr1	CG	SV	227440385	227440757	59	+	.	ID=4152;Type=deletion;Left=chr1:227440011-227440464;Right=chr1:227440385-227440757
chr1	CG	SV	227879160	227887881	119	.	.	ID=4151;Type=deletion;Left=chr1:227879160-227879441+;Right=chr1:227887463-227887881+;Distance=8303;DiscordantMatePairAlignments=119;LeftRepeat=;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66826980 (chr1:227879160-227887463);Frequency=0.47
chr1	CG	SV	227879160	227879441	119	+	.	ID=4151;Type=deletion;Left=chr1:227879160-227879441;Right=chr1:227887463-227887881
chr1	CG	SV	227887463	227887881	119	+	.	ID=4151;Type=deletion;Left=chr1:227879160-227879441;Right=chr1:227887463-227887881
chr1	CG	SV	228199261	228200793	53	.	.	ID=4150;Type=deletion;Left=chr1:228199261-228199653+;Right=chr1:228200501-228200793+;Distance=1240;DiscordantMatePairAlignments=53;LeftRepeat=AluSc:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr1	CG	SV	228199261	228199653	53	+	.	ID=4150;Type=deletion;Left=chr1:228199261-228199653;Right=chr1:228200501-228200793
chr1	CG	SV	228200501	228200793	53	+	.	ID=4150;Type=deletion;Left=chr1:228199261-228199653;Right=chr1:228200501-228200793
chr1	CG	SV	234615726	234618396	64	.	.	ID=4146;Type=deletion;Left=chr1:234615726-234616109+;Right=chr1:234617969-234618396+;Distance=2243;DiscordantMatePairAlignments=64;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67414199 (chr1:234615726-234617969);Frequency=1.00
chr1	CG	SV	234615726	234616109	64	+	.	ID=4146;Type=deletion;Left=chr1:234615726-234616109;Right=chr1:234617969-234618396
chr1	CG	SV	234617969	234618396	64	+	.	ID=4146;Type=deletion;Left=chr1:234615726-234616109;Right=chr1:234617969-234618396
chr1	CG	SV	235632623	235633249	26	.	.	ID=637;Type=inversion;Left=chr1:235632623-235632726-;Right=chr1:235632830-235633249+;Distance=104;DiscordantMatePairAlignments=26;LeftRepeat=AluJb:SINE:Alu;AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_001035:+;RightGenes=NM_001035:+;XRef=;Frequency=1.00
chr1	CG	SV	235632623	235632726	26	-	.	ID=637;Type=inversion;Left=chr1:235632623-235632726;Right=chr1:235632830-235633249
chr1	CG	SV	235632830	235633249	26	-	.	ID=637;Type=inversion;Left=chr1:235632623-235632726;Right=chr1:235632830-235633249
chr1	CG	SV	235632729	235632827	22	.	.	ID=4916;Type=inversion;Left=chr1:235632729-235633105+;Right=chr1:235632725-235632827-;Distance=98;DiscordantMatePairAlignments=22;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_001035:+;RightGenes=NM_001035:+;XRef=;Frequency=0.94
chr1	CG	SV	235632729	235633105	22	+	.	ID=4916;Type=inversion;Left=chr1:235632729-235633105;Right=chr1:235632725-235632827
chr1	CG	SV	235632725	235632827	22	+	.	ID=4916;Type=inversion;Left=chr1:235632729-235633105;Right=chr1:235632725-235632827
chr1	CG	SV	236918933	236920286	102	.	.	ID=4144;Type=deletion;Left=chr1:236918933-236919385+;Right=chr1:236919876-236920286+;Distance=943;DiscordantMatePairAlignments=102;LeftRepeat=;RightRepeat=L1HS:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr1	CG	SV	236918933	236919385	102	+	.	ID=4144;Type=deletion;Left=chr1:236918933-236919385;Right=chr1:236919876-236920286
chr1	CG	SV	236919876	236920286	102	+	.	ID=4144;Type=deletion;Left=chr1:236918933-236919385;Right=chr1:236919876-236920286
chr1	CG	SV	238683625	238684176	16	.	.	ID=4143;Type=deletion;Left=chr1:238683625-238684137+;Right=chr1:238683949-238684176+;Distance=324;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_020066:+;RightGenes=NM_020066:+;XRef=;Frequency=0.88
chr1	CG	SV	238683625	238684137	16	+	.	ID=4143;Type=deletion;Left=chr1:238683625-238684137;Right=chr1:238683949-238684176
chr1	CG	SV	238683949	238684176	16	+	.	ID=4143;Type=deletion;Left=chr1:238683625-238684137;Right=chr1:238683949-238684176
chr1	CG	SV	238707870	238708678	12	.	.	ID=4142;Type=deletion;Left=chr1:238707870-238708380+;Right=chr1:238708272-238708678+;Distance=402;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs70947197 (chr1:238707835-238708237);Frequency=0.76
chr1	CG	SV	238707870	238708380	12	+	.	ID=4142;Type=deletion;Left=chr1:238707870-238708380;Right=chr1:238708272-238708678
chr1	CG	SV	238708272	238708678	12	+	.	ID=4142;Type=deletion;Left=chr1:238707870-238708380;Right=chr1:238708272-238708678
chr1	CG	SV	239216496	239217287	14	.	.	ID=4141;Type=deletion;Left=chr1:239216496-239216929+;Right=chr1:239216821-239217287+;Distance=325;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_002924:-;RightGenes=NM_002924:-;XRef=rs10527858 (chr1:239216496-239216821);Frequency=1.00
chr1	CG	SV	239216496	239216929	14	+	.	ID=4141;Type=deletion;Left=chr1:239216496-239216929;Right=chr1:239216821-239217287
chr1	CG	SV	239216821	239217287	14	+	.	ID=4141;Type=deletion;Left=chr1:239216496-239216929;Right=chr1:239216821-239217287
chr1	CG	SV	239427176	239427711	11	.	.	ID=4140;Type=deletion;Left=chr1:239427176-239427674+;Right=chr1:239427491-239427711+;Distance=315;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L1MEb:LINE:L1;LeftGenes=NM_002924:-;RightGenes=NM_002924:-;XRef=;Frequency=0.71
chr1	CG	SV	239427176	239427674	11	+	.	ID=4140;Type=deletion;Left=chr1:239427176-239427674;Right=chr1:239427491-239427711
chr1	CG	SV	239427491	239427711	11	+	.	ID=4140;Type=deletion;Left=chr1:239427176-239427674;Right=chr1:239427491-239427711
chr1	CG	SV	239702746	243353657	134	.	.	ID=4915;Type=probable-inversion;Left=chr1:239702746-239703186+;Right=chr1:243353173-243353657-;Distance=3650911;DiscordantMatePairAlignments=134;LeftRepeat=L1MC2:LINE:L1;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001143943:+;NR_026586:+;NR_026587:+;XRef=;Frequency=0.00
chr1	CG	SV	239702746	239703186	134	+	.	ID=4915;Type=probable-inversion;Left=chr1:239702746-239703186;Right=chr1:243353173-243353657
chr1	CG	SV	243353173	243353657	134	+	.	ID=4915;Type=probable-inversion;Left=chr1:239702746-239703186;Right=chr1:243353173-243353657
chr1	CG	SV	239843148	239845210	82	.	.	ID=636;Type=probable-inversion;Left=chr1:239843148-239843487-;Right=chr1:239844780-239845210+;Distance=1293;DiscordantMatePairAlignments=82;LeftRepeat=;RightRepeat=Tandem period 45;LeftGenes=NM_014322:-;RightGenes=NM_014322:-;XRef=;Frequency=0.00
chr1	CG	SV	239843148	239843487	82	-	.	ID=636;Type=probable-inversion;Left=chr1:239843148-239843487;Right=chr1:239844780-239845210
chr1	CG	SV	239844780	239845210	82	-	.	ID=636;Type=probable-inversion;Left=chr1:239843148-239843487;Right=chr1:239844780-239845210
chr1	CG	SV	241194419	241196237	48	.	.	ID=4138;Type=deletion;Left=chr1:241194419-241194903+;Right=chr1:241195863-241196237+;Distance=1444;DiscordantMatePairAlignments=48;LeftRepeat=AluJo:SINE:Alu;SegDup;Self chain;RightRepeat=AluSp:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr1	CG	SV	241194419	241194903	48	+	.	ID=4138;Type=deletion;Left=chr1:241194419-241194903;Right=chr1:241195863-241196237
chr1	CG	SV	241195863	241196237	48	+	.	ID=4138;Type=deletion;Left=chr1:241194419-241194903;Right=chr1:241195863-241196237
chr1	CG	SV	241849368	241850884	205	.	.	ID=4137;Type=deletion;Left=chr1:241849368-241849827+;Right=chr1:241850378-241850884+;Distance=1010;DiscordantMatePairAlignments=205;LeftRepeat=L1MA4:LINE:L1;RightRepeat=;LeftGenes=NM_005465:-;NM_181690:-;RightGenes=NM_005465:-;NM_181690:-;XRef=rs72260277 (chr1:241849390-241850386);Frequency=0.94
chr1	CG	SV	241849368	241849827	205	+	.	ID=4137;Type=deletion;Left=chr1:241849368-241849827;Right=chr1:241850378-241850884
chr1	CG	SV	241850378	241850884	205	+	.	ID=4137;Type=deletion;Left=chr1:241849368-241849827;Right=chr1:241850378-241850884
chr1	CG	SV	245917098	245923509	40	.	.	ID=4135;Type=deletion;Left=chr1:245917098-245917532+;Right=chr1:245923151-245923509+;Distance=6053;DiscordantMatePairAlignments=40;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70949512 (chr1:245917098-245923151);Frequency=0.94
chr1	CG	SV	245917098	245917532	40	+	.	ID=4135;Type=deletion;Left=chr1:245917098-245917532;Right=chr1:245923151-245923509
chr1	CG	SV	245923151	245923509	40	+	.	ID=4135;Type=deletion;Left=chr1:245917098-245917532;Right=chr1:245923151-245923509
chr1	CG	SV	246634034	246634169	28	.	.	ID=1539;Type=tandem-duplication;Left=chr1:246634034-246634105-;Right=chr1:246634090-246634169-;Distance=64;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr1	CG	SV	246634034	246634105	28	-	.	ID=1539;Type=tandem-duplication;Left=chr1:246634034-246634105;Right=chr1:246634090-246634169
chr1	CG	SV	246634090	246634169	28	-	.	ID=1539;Type=tandem-duplication;Left=chr1:246634034-246634105;Right=chr1:246634090-246634169
chr2	CG	SV	1337076	1337961	98	.	.	ID=4132;Type=deletion;Left=chr2:1337076-1337548+;Right=chr2:1337523-1337961+;Distance=447;DiscordantMatePairAlignments=98;LeftRepeat=Self chain;Tandem period 106;RightRepeat=MIRb:SINE:MIR;Self chain;Tandem period 115;LeftGenes=NM_018968:+;RightGenes=NM_018968:+;XRef=rs66735644 (chr2:1337076-1337519);Frequency=0.94
chr2	CG	SV	1337076	1337548	98	+	.	ID=4132;Type=deletion;Left=chr2:1337076-1337548;Right=chr2:1337523-1337961
chr2	CG	SV	1337523	1337961	98	+	.	ID=4132;Type=deletion;Left=chr2:1337076-1337548;Right=chr2:1337523-1337961
chr2	CG	SV	1602147	1602822	22	.	.	ID=4129;Type=deletion;Left=chr2:1602147-1602664+;Right=chr2:1602491-1602822+;Distance=344;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;Tandem period 43;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr2	CG	SV	1602147	1602664	22	+	.	ID=4129;Type=deletion;Left=chr2:1602147-1602664;Right=chr2:1602491-1602822
chr2	CG	SV	1602491	1602822	22	+	.	ID=4129;Type=deletion;Left=chr2:1602147-1602664;Right=chr2:1602491-1602822
chr2	CG	SV	1780753	1781396	33	.	.	ID=4128;Type=deletion;Left=chr2:1780753-1781226+;Right=chr2:1781074-1781396+;Distance=321;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;Tandem period 29;Tandem period 59;Tandem period 88;RightRepeat=Self chain;LeftGenes=NM_015025:-;RightGenes=NM_015025:-;XRef=rs71915727 (chr2:1780621-1780945);Frequency=0.71
chr2	CG	SV	1780753	1781226	33	+	.	ID=4128;Type=deletion;Left=chr2:1780753-1781226;Right=chr2:1781074-1781396
chr2	CG	SV	1781074	1781396	33	+	.	ID=4128;Type=deletion;Left=chr2:1780753-1781226;Right=chr2:1781074-1781396
chr2	CG	SV	2777781	2778813	122	.	.	ID=4126;Type=deletion;Left=chr2:2777781-2778230+;Right=chr2:2778253-2778813+;Distance=472;DiscordantMatePairAlignments=122;LeftRepeat=Self chain;Tandem period 31;Tandem period 32;Tandem period 63;RightRepeat=Self chain;Tandem period 29;LeftGenes=;RightGenes=;XRef=rs67035310 (chr2:2777781-2778251);Frequency=0.76
chr2	CG	SV	2777781	2778230	122	+	.	ID=4126;Type=deletion;Left=chr2:2777781-2778230;Right=chr2:2778253-2778813
chr2	CG	SV	2778253	2778813	122	+	.	ID=4126;Type=deletion;Left=chr2:2777781-2778230;Right=chr2:2778253-2778813
chr2	CG	SV	4759185	4765659	98	.	.	ID=4124;Type=deletion;Left=chr2:4759185-4759441+;Right=chr2:4765250-4765659+;Distance=6065;DiscordantMatePairAlignments=98;LeftRepeat=;RightRepeat=L1M:LINE:L1;LeftGenes=;RightGenes=;XRef=rs74164256 (chr2:4759185-4765250);Frequency=1.00
chr2	CG	SV	4759185	4759441	98	+	.	ID=4124;Type=deletion;Left=chr2:4759185-4759441;Right=chr2:4765250-4765659
chr2	CG	SV	4765250	4765659	98	+	.	ID=4124;Type=deletion;Left=chr2:4759185-4759441;Right=chr2:4765250-4765659
chr2	CG	SV	8534264	8534964	24	.	.	ID=4122;Type=deletion;Left=chr2:8534264-8534738+;Right=chr2:8534571-8534964+;Distance=307;DiscordantMatePairAlignments=24;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs74164259 (chr2:8534264-8534571);Frequency=1.00
chr2	CG	SV	8534264	8534738	24	+	.	ID=4122;Type=deletion;Left=chr2:8534264-8534738;Right=chr2:8534571-8534964
chr2	CG	SV	8534571	8534964	24	+	.	ID=4122;Type=deletion;Left=chr2:8534264-8534738;Right=chr2:8534571-8534964
chr2	CG	SV	9876688	9877528	62	.	.	ID=4121;Type=deletion;Left=chr2:9876688-9877130+;Right=chr2:9877038-9877528+;Distance=350;DiscordantMatePairAlignments=62;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=FRAM:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr2	CG	SV	9876688	9877130	62	+	.	ID=4121;Type=deletion;Left=chr2:9876688-9877130;Right=chr2:9877038-9877528
chr2	CG	SV	9877038	9877528	62	+	.	ID=4121;Type=deletion;Left=chr2:9876688-9877130;Right=chr2:9877038-9877528
chr2	CG	SV	10743489	10744646	108	.	.	ID=4914;Type=probable-inversion;Left=chr2:10743489-10743973+;Right=chr2:10744471-10744646-;Distance=1157;DiscordantMatePairAlignments=108;LeftRepeat=AluJb:SINE:Alu;RightRepeat=L3:LINE:CR1;LeftGenes=NM_024894:-;RightGenes=NM_024894:-;XRef=;Frequency=0.35
chr2	CG	SV	10743489	10743973	108	+	.	ID=4914;Type=probable-inversion;Left=chr2:10743489-10743973;Right=chr2:10744471-10744646
chr2	CG	SV	10744471	10744646	108	+	.	ID=4914;Type=probable-inversion;Left=chr2:10743489-10743973;Right=chr2:10744471-10744646
chr2	CG	SV	11166249	11166828	20	.	.	ID=4120;Type=deletion;Left=chr2:11166249-11166750+;Right=chr2:11166610-11166828+;Distance=361;DiscordantMatePairAlignments=20;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72468728 (chr2:11166057-11166422);Frequency=0.35
chr2	CG	SV	11166249	11166750	20	+	.	ID=4120;Type=deletion;Left=chr2:11166249-11166750;Right=chr2:11166610-11166828
chr2	CG	SV	11166610	11166828	20	+	.	ID=4120;Type=deletion;Left=chr2:11166249-11166750;Right=chr2:11166610-11166828
chr2	CG	SV	16168571	16169335	25	.	.	ID=4118;Type=deletion;Left=chr2:16168571-16168864+;Right=chr2:16168896-16169335+;Distance=325;DiscordantMatePairAlignments=25;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs74164266 (chr2:16168571-16168896);Frequency=0.94
chr2	CG	SV	16168571	16168864	25	+	.	ID=4118;Type=deletion;Left=chr2:16168571-16168864;Right=chr2:16168896-16169335
chr2	CG	SV	16168896	16169335	25	+	.	ID=4118;Type=deletion;Left=chr2:16168571-16168864;Right=chr2:16168896-16169335
chr2	CG	SV	20530159	20530968	20	.	.	ID=4116;Type=deletion;Left=chr2:20530159-20530533+;Right=chr2:20530466-20530968+;Distance=307;DiscordantMatePairAlignments=20;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67436233 (chr2:20530159-20530466);Frequency=0.47
chr2	CG	SV	20530159	20530533	20	+	.	ID=4116;Type=deletion;Left=chr2:20530159-20530533;Right=chr2:20530466-20530968
chr2	CG	SV	20530466	20530968	20	+	.	ID=4116;Type=deletion;Left=chr2:20530159-20530533;Right=chr2:20530466-20530968
chr2	CG	SV	33077966	33081205	82	.	.	ID=4110;Type=deletion;Left=chr2:33077966-33078448+;Right=chr2:33080796-33081205+;Distance=2830;DiscordantMatePairAlignments=82;LeftRepeat=MER5B:DNA:MER1_type;RightRepeat=;LeftGenes=NM_206943:+;RightGenes=NM_206943:+;XRef=rs72458672 (chr2:33077966-33080796);Frequency=0.59
chr2	CG	SV	33077966	33078448	82	+	.	ID=4110;Type=deletion;Left=chr2:33077966-33078448;Right=chr2:33080796-33081205
chr2	CG	SV	33080796	33081205	82	+	.	ID=4110;Type=deletion;Left=chr2:33077966-33078448;Right=chr2:33080796-33081205
chr2	CG	SV	33618082	33618756	115	.	.	ID=4912;Type=probable-inversion;Left=chr2:33618082-33618515+;Right=chr2:33618468-33618756-;Distance=674;DiscordantMatePairAlignments=115;LeftRepeat=;RightRepeat=;LeftGenes=NM_001139488:+;NM_015376:+;NM_170672:+;RightGenes=NM_001139488:+;NM_015376:+;NM_170672:+;XRef=;Frequency=0.10
chr2	CG	SV	33618082	33618515	115	+	.	ID=4912;Type=probable-inversion;Left=chr2:33618082-33618515;Right=chr2:33618468-33618756
chr2	CG	SV	33618468	33618756	115	+	.	ID=4912;Type=probable-inversion;Left=chr2:33618082-33618515;Right=chr2:33618468-33618756
chr2	CG	SV	34377160	34379549	53	.	.	ID=4109;Type=deletion;Left=chr2:34377160-34377524+;Right=chr2:34379225-34379549+;Distance=2065;DiscordantMatePairAlignments=53;LeftRepeat=;RightRepeat=L1PA6:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67806724 (chr2:34377158-34379223);Frequency=0.76
chr2	CG	SV	34377160	34377524	53	+	.	ID=4109;Type=deletion;Left=chr2:34377160-34377524;Right=chr2:34379225-34379549
chr2	CG	SV	34379225	34379549	53	+	.	ID=4109;Type=deletion;Left=chr2:34377160-34377524;Right=chr2:34379225-34379549
chr2	CG	SV	34497152	34497923	18	.	.	ID=4108;Type=deletion;Left=chr2:34497152-34497530+;Right=chr2:34497459-34497923+;Distance=307;DiscordantMatePairAlignments=18;LeftRepeat=AluY:SINE:Alu;RightRepeat=MER21C:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr2	CG	SV	34497152	34497530	18	+	.	ID=4108;Type=deletion;Left=chr2:34497152-34497530;Right=chr2:34497459-34497923
chr2	CG	SV	34497459	34497923	18	+	.	ID=4108;Type=deletion;Left=chr2:34497152-34497530;Right=chr2:34497459-34497923
chr2	CG	SV	34819231	34821208	87	.	.	ID=4106;Type=deletion;Left=chr2:34819231-34819616+;Right=chr2:34820771-34821208+;Distance=1540;DiscordantMatePairAlignments=87;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr2	CG	SV	34819231	34819616	87	+	.	ID=4106;Type=deletion;Left=chr2:34819231-34819616;Right=chr2:34820771-34821208
chr2	CG	SV	34820771	34821208	87	+	.	ID=4106;Type=deletion;Left=chr2:34819231-34819616;Right=chr2:34820771-34821208
chr2	CG	SV	38924994	38925677	22	.	.	ID=4105;Type=deletion;Left=chr2:38924994-38925413+;Right=chr2:38925336-38925677+;Distance=342;DiscordantMatePairAlignments=22;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_198963:-;RightGenes=NM_198963:-;XRef=rs71898427 (chr2:38924981-38925323);Frequency=1.00
chr2	CG	SV	38924994	38925413	22	+	.	ID=4105;Type=deletion;Left=chr2:38924994-38925413;Right=chr2:38925336-38925677
chr2	CG	SV	38925336	38925677	22	+	.	ID=4105;Type=deletion;Left=chr2:38924994-38925413;Right=chr2:38925336-38925677
chr2	CG	SV	41629470	41635158	21	.	.	ID=4104;Type=deletion;Left=chr2:41629470-41629841+;Right=chr2:41634787-41635158+;Distance=5317;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=L1P5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66488562 (chr2:41629470-41634786);Frequency=0.47
chr2	CG	SV	41629470	41629841	21	+	.	ID=4104;Type=deletion;Left=chr2:41629470-41629841;Right=chr2:41634787-41635158
chr2	CG	SV	41634787	41635158	21	+	.	ID=4104;Type=deletion;Left=chr2:41629470-41629841;Right=chr2:41634787-41635158
chr2	CG	SV	41826658	41829780	69	.	.	ID=4103;Type=deletion;Left=chr2:41826658-41827031+;Right=chr2:41829382-41829780+;Distance=2724;DiscordantMatePairAlignments=69;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66596405 (chr2:41826660-41829384);Frequency=1.00
chr2	CG	SV	41826658	41827031	69	+	.	ID=4103;Type=deletion;Left=chr2:41826658-41827031;Right=chr2:41829382-41829780
chr2	CG	SV	41829382	41829780	69	+	.	ID=4103;Type=deletion;Left=chr2:41826658-41827031;Right=chr2:41829382-41829780
chr2	CG	SV	42199763	42201307	32	.	.	ID=4102;Type=deletion;Left=chr2:42199763-42200089+;Right=chr2:42200822-42201307+;Distance=1059;DiscordantMatePairAlignments=32;LeftRepeat=L1ME1:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr2	CG	SV	42199763	42200089	32	+	.	ID=4102;Type=deletion;Left=chr2:42199763-42200089;Right=chr2:42200822-42201307
chr2	CG	SV	42200822	42201307	32	+	.	ID=4102;Type=deletion;Left=chr2:42199763-42200089;Right=chr2:42200822-42201307
chr2	CG	SV	42300411	42307432	10	.	.	ID=4101;Type=deletion;Left=chr2:42300411-42300822+;Right=chr2:42307151-42307432+;Distance=6740;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_001145076:+;NM_019063:+;RightGenes=NM_001145076:+;NM_019063:+;XRef=;Frequency=0.00
chr2	CG	SV	42300411	42300822	10	+	.	ID=4101;Type=deletion;Left=chr2:42300411-42300822;Right=chr2:42307151-42307432
chr2	CG	SV	42307151	42307432	10	+	.	ID=4101;Type=deletion;Left=chr2:42300411-42300822;Right=chr2:42307151-42307432
chr2	CG	SV	44337954	44345199	16	.	.	ID=4099;Type=deletion;Left=chr2:44337954-44338355+;Right=chr2:44345038-44345199+;Distance=7084;DiscordantMatePairAlignments=16;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	44337954	44338355	16	+	.	ID=4099;Type=deletion;Left=chr2:44337954-44338355;Right=chr2:44345038-44345199
chr2	CG	SV	44345038	44345199	16	+	.	ID=4099;Type=deletion;Left=chr2:44337954-44338355;Right=chr2:44345038-44345199
chr2	CG	SV	51078052	51079511	53	.	.	ID=4096;Type=deletion;Left=chr2:51078052-51078482+;Right=chr2:51079047-51079511+;Distance=995;DiscordantMatePairAlignments=53;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_001135659:-;NM_004801:-;RightGenes=NM_001135659:-;NM_004801:-;XRef=rs67174145 (chr2:51078052-51079047);Frequency=0.06
chr2	CG	SV	51078052	51078482	53	+	.	ID=4096;Type=deletion;Left=chr2:51078052-51078482;Right=chr2:51079047-51079511
chr2	CG	SV	51079047	51079511	53	+	.	ID=4096;Type=deletion;Left=chr2:51078052-51078482;Right=chr2:51079047-51079511
chr2	CG	SV	53626037	53631700	54	.	.	ID=4092;Type=deletion;Left=chr2:53626037-53626439+;Right=chr2:53631348-53631700+;Distance=5311;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	53626037	53626439	54	+	.	ID=4092;Type=deletion;Left=chr2:53626037-53626439;Right=chr2:53631348-53631700
chr2	CG	SV	53631348	53631700	54	+	.	ID=4092;Type=deletion;Left=chr2:53626037-53626439;Right=chr2:53631348-53631700
chr2	CG	SV	54418997	54421362	27	.	.	ID=4091;Type=deletion;Left=chr2:54418997-54419461+;Right=chr2:54420977-54421362+;Distance=1980;DiscordantMatePairAlignments=27;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_001100396:+;RightGenes=NM_001100396:+;XRef=rs66784896 (chr2:54419000-54420977);Frequency=0.94
chr2	CG	SV	54418997	54419461	27	+	.	ID=4091;Type=deletion;Left=chr2:54418997-54419461;Right=chr2:54420977-54421362
chr2	CG	SV	54420977	54421362	27	+	.	ID=4091;Type=deletion;Left=chr2:54418997-54419461;Right=chr2:54420977-54421362
chr2	CG	SV	57196247	57197088	17	.	.	ID=4089;Type=deletion;Left=chr2:57196247-57196659+;Right=chr2:57196574-57197088+;Distance=327;DiscordantMatePairAlignments=17;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=MLT1D:LTR:MaLR;Tandem period 82;LeftGenes=;RightGenes=;XRef=rs10529221 (chr2:57196247-57196574);Frequency=1.00
chr2	CG	SV	57196247	57196659	17	+	.	ID=4089;Type=deletion;Left=chr2:57196247-57196659;Right=chr2:57196574-57197088
chr2	CG	SV	57196574	57197088	17	+	.	ID=4089;Type=deletion;Left=chr2:57196247-57196659;Right=chr2:57196574-57197088
chr2	CG	SV	61554257	61556959	27	.	.	ID=4911;Type=distal-duplication;Left=chr2:61554257-61554643+;Right=chr2:61556678-61556959-;Distance=2702;DiscordantMatePairAlignments=27;LeftRepeat=AluJo:SINE:Alu;RightRepeat=HAL1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr2	CG	SV	61554257	61554643	27	+	.	ID=4911;Type=distal-duplication;Left=chr2:61554257-61554643;Right=chr2:61556678-61556959
chr2	CG	SV	61556678	61556959	27	+	.	ID=4911;Type=distal-duplication;Left=chr2:61554257-61554643;Right=chr2:61556678-61556959
chr2	CG	SV	61553721	61556947	88	.	.	ID=632;Type=distal-duplication;Left=chr2:61553721-61554269-;Right=chr2:61556436-61556947+;Distance=2167;DiscordantMatePairAlignments=88;LeftRepeat=AluJo:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr2	CG	SV	61553721	61554269	88	-	.	ID=632;Type=distal-duplication;Left=chr2:61553721-61554269;Right=chr2:61556436-61556947
chr2	CG	SV	61556436	61556947	88	-	.	ID=632;Type=distal-duplication;Left=chr2:61553721-61554269;Right=chr2:61556436-61556947
chr2	CG	SV	62203991	62205076	12	.	.	ID=4087;Type=deletion;Left=chr2:62203991-62204361+;Right=chr2:62204784-62205076+;Distance=793;DiscordantMatePairAlignments=12;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_152516:+;RightGenes=NM_152516:+;XRef=;Frequency=0.00
chr2	CG	SV	62203991	62204361	12	+	.	ID=4087;Type=deletion;Left=chr2:62203991-62204361;Right=chr2:62204784-62205076
chr2	CG	SV	62204784	62205076	12	+	.	ID=4087;Type=deletion;Left=chr2:62203991-62204361;Right=chr2:62204784-62205076
chr2	CG	SV	62465302	62468961	66	.	.	ID=4910;Type=probable-inversion;Left=chr2:62465302-62465646+;Right=chr2:62468552-62468961-;Distance=3659;DiscordantMatePairAlignments=66;LeftRepeat=;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	62465302	62465646	66	+	.	ID=4910;Type=probable-inversion;Left=chr2:62465302-62465646;Right=chr2:62468552-62468961
chr2	CG	SV	62468552	62468961	66	+	.	ID=4910;Type=probable-inversion;Left=chr2:62465302-62465646;Right=chr2:62468552-62468961
chr2	CG	SV	65661023	65661691	15	.	.	ID=4086;Type=deletion;Left=chr2:65661023-65661563+;Right=chr2:65661333-65661691+;Distance=310;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6146792 (chr2:65661011-65661321);Frequency=1.00
chr2	CG	SV	65661023	65661563	15	+	.	ID=4086;Type=deletion;Left=chr2:65661023-65661563;Right=chr2:65661333-65661691
chr2	CG	SV	65661333	65661691	15	+	.	ID=4086;Type=deletion;Left=chr2:65661023-65661563;Right=chr2:65661333-65661691
chr2	CG	SV	66359098	66361491	93	.	.	ID=4085;Type=deletion;Left=chr2:66359098-66359531+;Right=chr2:66361062-66361491+;Distance=1964;DiscordantMatePairAlignments=93;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs67498305 (chr2:66359098-66361062);Frequency=0.41
chr2	CG	SV	66359098	66359531	93	+	.	ID=4085;Type=deletion;Left=chr2:66359098-66359531;Right=chr2:66361062-66361491
chr2	CG	SV	66361062	66361491	93	+	.	ID=4085;Type=deletion;Left=chr2:66359098-66359531;Right=chr2:66361062-66361491
chr2	CG	SV	69978557	69979531	176	.	.	ID=4084;Type=deletion;Left=chr2:69978557-69979047+;Right=chr2:69979078-69979531+;Distance=521;DiscordantMatePairAlignments=176;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;LeftGenes=NM_006857:+;RightGenes=NM_006857:+;XRef=rs67525018 (chr2:69978548-69979069);Frequency=0.76
chr2	CG	SV	69978557	69979047	176	+	.	ID=4084;Type=deletion;Left=chr2:69978557-69979047;Right=chr2:69979078-69979531
chr2	CG	SV	69979078	69979531	176	+	.	ID=4084;Type=deletion;Left=chr2:69978557-69979047;Right=chr2:69979078-69979531
chr2	CG	SV	73284489	73285125	20	.	.	ID=4083;Type=deletion;Left=chr2:73284489-73284988+;Right=chr2:73284801-73285125+;Distance=312;DiscordantMatePairAlignments=20;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001134462:+;RightGenes=NM_001134462:+;XRef=rs66517858 (chr2:73284454-73284766);Frequency=0.53
chr2	CG	SV	73284489	73284988	20	+	.	ID=4083;Type=deletion;Left=chr2:73284489-73284988;Right=chr2:73284801-73285125
chr2	CG	SV	73284801	73285125	20	+	.	ID=4083;Type=deletion;Left=chr2:73284489-73284988;Right=chr2:73284801-73285125
chr2	CG	SV	76380020	76382859	88	.	.	ID=4081;Type=deletion;Left=chr2:76380020-76380490+;Right=chr2:76382415-76382859+;Distance=2395;DiscordantMatePairAlignments=88;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68153335 (chr2:76380020-76382415);Frequency=1.00
chr2	CG	SV	76380020	76380490	88	+	.	ID=4081;Type=deletion;Left=chr2:76380020-76380490;Right=chr2:76382415-76382859
chr2	CG	SV	76382415	76382859	88	+	.	ID=4081;Type=deletion;Left=chr2:76380020-76380490;Right=chr2:76382415-76382859
chr2	CG	SV	77971399	77972281	125	.	.	ID=4080;Type=deletion;Left=chr2:77971399-77971816+;Right=chr2:77971866-77972281+;Distance=467;DiscordantMatePairAlignments=125;LeftRepeat=;RightRepeat=L1MA7:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72224379 (chr2:77971399-77971865);Frequency=0.47
chr2	CG	SV	77971399	77971816	125	+	.	ID=4080;Type=deletion;Left=chr2:77971399-77971816;Right=chr2:77971866-77972281
chr2	CG	SV	77971866	77972281	125	+	.	ID=4080;Type=deletion;Left=chr2:77971399-77971816;Right=chr2:77971866-77972281
chr2	CG	SV	85372632	85373222	16	.	.	ID=4075;Type=deletion;Left=chr2:85372632-85373134+;Right=chr2:85372969-85373222+;Distance=337;DiscordantMatePairAlignments=16;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_031283:+;RightGenes=NM_031283:+;XRef=rs67103971 (chr2:85372616-85372953);Frequency=0.76
chr2	CG	SV	85372632	85373134	16	+	.	ID=4075;Type=deletion;Left=chr2:85372632-85373134;Right=chr2:85372969-85373222
chr2	CG	SV	85372969	85373222	16	+	.	ID=4075;Type=deletion;Left=chr2:85372632-85373134;Right=chr2:85372969-85373222
chr2	CG	SV	88810350	88813932	241	.	.	ID=4073;Type=deletion;Left=chr2:88810350-88810786+;Right=chr2:88813404-88813932+;Distance=3054;DiscordantMatePairAlignments=241;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_144563:+;RightGenes=NM_144563:+;XRef=rs72121102 (chr2:88810343-88813397);Frequency=1.00
chr2	CG	SV	88810350	88810786	241	+	.	ID=4073;Type=deletion;Left=chr2:88810350-88810786;Right=chr2:88813404-88813932
chr2	CG	SV	88813404	88813932	241	+	.	ID=4073;Type=deletion;Left=chr2:88810350-88810786;Right=chr2:88813404-88813932
chr2	CG	SV	91043624	91049532	13	.	.	ID=4071;Type=deletion;Left=chr2:91043624-91044128+;Right=chr2:91049215-91049532+;Distance=5591;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	91043624	91044128	13	+	.	ID=4071;Type=deletion;Left=chr2:91043624-91044128;Right=chr2:91049215-91049532
chr2	CG	SV	91049215	91049532	13	+	.	ID=4071;Type=deletion;Left=chr2:91043624-91044128;Right=chr2:91049215-91049532
chr2	CG	SV	91148215	91149119	13	.	.	ID=4070;Type=deletion;Left=chr2:91148215-91148576+;Right=chr2:91148993-91149119+;Distance=778;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=AluSq:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs6146841 (chr2:91148022-91148798);Frequency=0.94
chr2	CG	SV	91148215	91148576	13	+	.	ID=4070;Type=deletion;Left=chr2:91148215-91148576;Right=chr2:91148993-91149119
chr2	CG	SV	91148993	91149119	13	+	.	ID=4070;Type=deletion;Left=chr2:91148215-91148576;Right=chr2:91148993-91149119
chr2	CG	SV	94892322	94912168	77	.	.	ID=4065;Type=complex;Left=chr2:94892322-94892691+;Right=chr2:94911773-94912168+;Distance=19451;DiscordantMatePairAlignments=77;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr2	CG	SV	94892322	94892691	77	+	.	ID=4065;Type=complex;Left=chr2:94892322-94892691;Right=chr2:94911773-94912168
chr2	CG	SV	94911773	94912168	77	+	.	ID=4065;Type=complex;Left=chr2:94892322-94892691;Right=chr2:94911773-94912168
chr2	CG	SV	94912261	94913586	25	.	.	ID=4064;Type=complex;Left=chr2:94912261-94912741+;Right=chr2:94912928-94913586+;Distance=667;DiscordantMatePairAlignments=25;LeftRepeat=(CA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem AC;RightRepeat=L1PA5:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr2	CG	SV	94912261	94912741	25	+	.	ID=4064;Type=complex;Left=chr2:94912261-94912741;Right=chr2:94912928-94913586
chr2	CG	SV	94912928	94913586	25	+	.	ID=4064;Type=complex;Left=chr2:94912261-94912741;Right=chr2:94912928-94913586
chr2	CG	SV	94917693	94918968	12	.	.	ID=4063;Type=deletion;Left=chr2:94917693-94917968+;Right=chr2:94918427-94918968+;Distance=734;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;Tigger4(Zombi):DNA:MER2_type;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr2	CG	SV	94917693	94917968	12	+	.	ID=4063;Type=deletion;Left=chr2:94917693-94917968;Right=chr2:94918427-94918968
chr2	CG	SV	94918427	94918968	12	+	.	ID=4063;Type=deletion;Left=chr2:94917693-94917968;Right=chr2:94918427-94918968
chr2	CG	SV	101341646	101342354	27	.	.	ID=4061;Type=deletion;Left=chr2:101341646-101342010+;Right=chr2:101341979-101342354+;Distance=333;DiscordantMatePairAlignments=27;LeftRepeat=MER50:LTR:ERV1;Self chain;RightRepeat=MER50:LTR:ERV1;Self chain;LeftGenes=NM_153836:-;RightGenes=NM_153836:-;XRef=rs66612024 (chr2:101341646-101341979);Frequency=0.94
chr2	CG	SV	101341646	101342010	27	+	.	ID=4061;Type=deletion;Left=chr2:101341646-101342010;Right=chr2:101341979-101342354
chr2	CG	SV	101341979	101342354	27	+	.	ID=4061;Type=deletion;Left=chr2:101341646-101342010;Right=chr2:101341979-101342354
chr2	CG	SV	101464279	101464863	29	.	.	ID=4060;Type=deletion;Left=chr2:101464279-101464829+;Right=chr2:101464606-101464863+;Distance=327;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72121237 (chr2:101464270-101464597);Frequency=0.88
chr2	CG	SV	101464279	101464829	29	+	.	ID=4060;Type=deletion;Left=chr2:101464279-101464829;Right=chr2:101464606-101464863
chr2	CG	SV	101464606	101464863	29	+	.	ID=4060;Type=deletion;Left=chr2:101464279-101464829;Right=chr2:101464606-101464863
chr2	CG	SV	106245998	106252594	44	.	.	ID=4058;Type=deletion;Left=chr2:106245998-106246360+;Right=chr2:106252349-106252594+;Distance=6351;DiscordantMatePairAlignments=44;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr2	CG	SV	106245998	106246360	44	+	.	ID=4058;Type=deletion;Left=chr2:106245998-106246360;Right=chr2:106252349-106252594
chr2	CG	SV	106252349	106252594	44	+	.	ID=4058;Type=deletion;Left=chr2:106245998-106246360;Right=chr2:106252349-106252594
chr2	CG	SV	108676986	108678690	41	.	.	ID=4057;Type=deletion;Left=chr2:108676986-108677372+;Right=chr2:108678542-108678690+;Distance=1556;DiscordantMatePairAlignments=41;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L1MB7:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71831316 (chr2:108676746-108678213);Frequency=0.41
chr2	CG	SV	108676986	108677372	41	+	.	ID=4057;Type=deletion;Left=chr2:108676986-108677372;Right=chr2:108678542-108678690
chr2	CG	SV	108678542	108678690	41	+	.	ID=4057;Type=deletion;Left=chr2:108676986-108677372;Right=chr2:108678542-108678690
chr2	CG	SV	110210043	111170037	86	.	.	ID=4056;Type=deletion;Left=chr2:110210043-110210489+;Right=chr2:111169574-111170037+;Distance=959531;DiscordantMatePairAlignments=86;LeftRepeat=SegDup;Self chain;RightRepeat=LTR19B:LTR:ERV1;Self chain;LeftGenes=NM_005434:-;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	110210043	110210489	86	+	.	ID=4056;Type=deletion;Left=chr2:110210043-110210489;Right=chr2:111169574-111170037
chr2	CG	SV	111169574	111170037	86	+	.	ID=4056;Type=deletion;Left=chr2:110210043-110210489;Right=chr2:111169574-111170037
chr2	CG	SV	116690512	116698751	107	.	.	ID=629;Type=complex;Left=chr2:116690512-116690809-;Right=chr2:116698356-116698751+;Distance=7547;DiscordantMatePairAlignments=107;LeftRepeat=;RightRepeat=L1M4c:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr2	CG	SV	116690512	116690809	107	-	.	ID=629;Type=complex;Left=chr2:116690512-116690809;Right=chr2:116698356-116698751
chr2	CG	SV	116698356	116698751	107	-	.	ID=629;Type=complex;Left=chr2:116690512-116690809;Right=chr2:116698356-116698751
chr2	CG	SV	116691104	116695218	95	.	.	ID=4054;Type=complex;Left=chr2:116691104-116691399+;Right=chr2:116694774-116695218+;Distance=3670;DiscordantMatePairAlignments=95;LeftRepeat=Charlie4:DNA:MER1_type;RightRepeat=L1M4c:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67592537 (chr2:116691104-116694774);Frequency=0.24
chr2	CG	SV	116691104	116691399	95	+	.	ID=4054;Type=complex;Left=chr2:116691104-116691399;Right=chr2:116694774-116695218
chr2	CG	SV	116694774	116695218	95	+	.	ID=4054;Type=complex;Left=chr2:116691104-116691399;Right=chr2:116694774-116695218
chr2	CG	SV	116694769	116698777	108	.	.	ID=4908;Type=complex;Left=chr2:116694769-116695232+;Right=chr2:116698349-116698777-;Distance=4008;DiscordantMatePairAlignments=108;LeftRepeat=L1M4c:LINE:L1;RightRepeat=L1M4c:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr2	CG	SV	116694769	116695232	108	+	.	ID=4908;Type=complex;Left=chr2:116694769-116695232;Right=chr2:116698349-116698777
chr2	CG	SV	116698349	116698777	108	+	.	ID=4908;Type=complex;Left=chr2:116694769-116695232;Right=chr2:116698349-116698777
chr2	CG	SV	116694624	116698516	10	.	.	ID=628;Type=complex;Left=chr2:116694624-116694773-;Right=chr2:116698351-116698516+;Distance=3578;DiscordantMatePairAlignments=10;LeftRepeat=L1M4c:LINE:L1;RightRepeat=L1M4c:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr2	CG	SV	116694624	116694773	10	-	.	ID=628;Type=complex;Left=chr2:116694624-116694773;Right=chr2:116698351-116698516
chr2	CG	SV	116698351	116698516	10	-	.	ID=628;Type=complex;Left=chr2:116694624-116694773;Right=chr2:116698351-116698516
chr2	CG	SV	117609533	117610407	11	.	.	ID=4052;Type=deletion;Left=chr2:117609533-117609920+;Right=chr2:117609872-117610407+;Distance=339;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MER4E1:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	117609533	117609920	11	+	.	ID=4052;Type=deletion;Left=chr2:117609533-117609920;Right=chr2:117609872-117610407
chr2	CG	SV	117609872	117610407	11	+	.	ID=4052;Type=deletion;Left=chr2:117609533-117609920;Right=chr2:117609872-117610407
chr2	CG	SV	119762084	119767450	41	.	.	ID=4051;Type=deletion;Left=chr2:119762084-119762415+;Right=chr2:119767011-119767450+;Distance=4927;DiscordantMatePairAlignments=41;LeftRepeat=L1ME2:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	119762084	119762415	41	+	.	ID=4051;Type=deletion;Left=chr2:119762084-119762415;Right=chr2:119767011-119767450
chr2	CG	SV	119767011	119767450	41	+	.	ID=4051;Type=deletion;Left=chr2:119762084-119762415;Right=chr2:119767011-119767450
chr2	CG	SV	119998882	119999614	197	.	.	ID=1528;Type=tandem-duplication;Left=chr2:119998882-119999252-;Right=chr2:119999304-119999614-;Distance=362;DiscordantMatePairAlignments=197;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr2	CG	SV	119998882	119999252	197	-	.	ID=1528;Type=tandem-duplication;Left=chr2:119998882-119999252;Right=chr2:119999304-119999614
chr2	CG	SV	119999304	119999614	197	-	.	ID=1528;Type=tandem-duplication;Left=chr2:119998882-119999252;Right=chr2:119999304-119999614
chr2	CG	SV	120133430	120134958	72	.	.	ID=1527;Type=distal-duplication;Left=chr2:120133430-120133549-;Right=chr2:120134433-120134958-;Distance=1409;DiscordantMatePairAlignments=72;LeftRepeat=L1MC4a:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	120133430	120133549	72	-	.	ID=1527;Type=distal-duplication;Left=chr2:120133430-120133549;Right=chr2:120134433-120134958
chr2	CG	SV	120134433	120134958	72	-	.	ID=1527;Type=distal-duplication;Left=chr2:120133430-120133549;Right=chr2:120134433-120134958
chr2	CG	SV	120133670	120135445	37	.	.	ID=4050;Type=distal-duplication;Left=chr2:120133670-120133794+;Right=chr2:120134968-120135445+;Distance=1298;DiscordantMatePairAlignments=37;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72020679 (chr2:120133667-120134965);Frequency=0.94
chr2	CG	SV	120133670	120133794	37	+	.	ID=4050;Type=distal-duplication;Left=chr2:120133670-120133794;Right=chr2:120134968-120135445
chr2	CG	SV	120134968	120135445	37	+	.	ID=4050;Type=distal-duplication;Left=chr2:120133670-120133794;Right=chr2:120134968-120135445
chr2	CG	SV	123081348	123082272	90	.	.	ID=4048;Type=deletion;Left=chr2:123081348-123081677+;Right=chr2:123081846-123082272+;Distance=498;DiscordantMatePairAlignments=90;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr2	CG	SV	123081348	123081677	90	+	.	ID=4048;Type=deletion;Left=chr2:123081348-123081677;Right=chr2:123081846-123082272
chr2	CG	SV	123081846	123082272	90	+	.	ID=4048;Type=deletion;Left=chr2:123081348-123081677;Right=chr2:123081846-123082272
chr2	CG	SV	124768226	124769710	119	.	.	ID=4851;Type=distal-duplication;Left=chr2:124768226-124768720+;Right=chr2:124769382-124769710-;Distance=1484;DiscordantMatePairAlignments=119;LeftRepeat=;RightRepeat=MER41B:LTR:ERV1;LeftGenes=NM_130773:+;RightGenes=NM_130773:+;XRef=;Frequency=0.82
chr2	CG	SV	124768226	124768720	119	+	.	ID=4851;Type=distal-duplication;Left=chr2:124768226-124768720;Right=chr2:124769382-124769710
chr2	CG	SV	124769382	124769710	119	+	.	ID=4851;Type=distal-duplication;Left=chr2:124768226-124768720;Right=chr2:124769382-124769710
chr2	CG	SV	124767785	124769706	74	.	.	ID=584;Type=distal-duplication;Left=chr2:124767785-124768229-;Right=chr2:124769384-124769706+;Distance=1155;DiscordantMatePairAlignments=74;LeftRepeat=;RightRepeat=;LeftGenes=NM_130773:+;RightGenes=NM_130773:+;XRef=;Frequency=0.82
chr2	CG	SV	124767785	124768229	74	-	.	ID=584;Type=distal-duplication;Left=chr2:124767785-124768229;Right=chr2:124769384-124769706
chr2	CG	SV	124769384	124769706	74	-	.	ID=584;Type=distal-duplication;Left=chr2:124767785-124768229;Right=chr2:124769384-124769706
chr2	CG	SV	126159721	126168814	188	.	.	ID=4046;Type=deletion;Left=chr2:126159721-126160153+;Right=chr2:126168305-126168814+;Distance=8584;DiscordantMatePairAlignments=188;LeftRepeat=L1MD1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66740069 (chr2:126159717-126168301);Frequency=0.88
chr2	CG	SV	126159721	126160153	188	+	.	ID=4046;Type=deletion;Left=chr2:126159721-126160153;Right=chr2:126168305-126168814
chr2	CG	SV	126168305	126168814	188	+	.	ID=4046;Type=deletion;Left=chr2:126159721-126160153;Right=chr2:126168305-126168814
chr2	CG	SV	127391227	127394156	192	.	.	ID=4045;Type=deletion;Left=chr2:127391227-127391700+;Right=chr2:127393743-127394156+;Distance=2516;DiscordantMatePairAlignments=192;LeftRepeat=;RightRepeat=L1MEd:LINE:L1;LeftGenes=;RightGenes=;XRef=rs74164329 (chr2:127391228-127393744);Frequency=1.00
chr2	CG	SV	127391227	127391700	192	+	.	ID=4045;Type=deletion;Left=chr2:127391227-127391700;Right=chr2:127393743-127394156
chr2	CG	SV	127393743	127394156	192	+	.	ID=4045;Type=deletion;Left=chr2:127391227-127391700;Right=chr2:127393743-127394156
chr2	CG	SV	131603373	131603558	22	.	.	ID=4850;Type=probable-inversion;Left=chr2:131603373-131603702+;Right=chr2:131603387-131603558-;Distance=185;DiscordantMatePairAlignments=22;LeftRepeat=AluSx:SINE:Alu;Self chain;Tandem A;RightRepeat=AluSq:SINE:Alu;Self chain;LeftGenes=NM_001100623:+;NM_017958:+;RightGenes=NM_001100623:+;NM_017958:+;XRef=;Frequency=0.94
chr2	CG	SV	131603373	131603702	22	+	.	ID=4850;Type=probable-inversion;Left=chr2:131603373-131603702;Right=chr2:131603387-131603558
chr2	CG	SV	131603387	131603558	22	+	.	ID=4850;Type=probable-inversion;Left=chr2:131603373-131603702;Right=chr2:131603387-131603558
chr2	CG	SV	132733905	132735653	968	.	.	ID=3956;Type=deletion;Left=chr2:132733905-132734307+;Right=chr2:132735177-132735653+;Distance=1272;DiscordantMatePairAlignments=968;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs72407802 (chr2:132733904-132735114);Frequency=1.00
chr2	CG	SV	132733905	132734307	968	+	.	ID=3956;Type=deletion;Left=chr2:132733905-132734307;Right=chr2:132735177-132735653
chr2	CG	SV	132735177	132735653	968	+	.	ID=3956;Type=deletion;Left=chr2:132733905-132734307;Right=chr2:132735177-132735653
chr2	CG	SV	132736921	132737286	96	+	.	ID=4617;Type=complex;Left=chr2:132736921-132737286+;Right=chr17:42569525-42569728-;Distance=;DiscordantMatePairAlignments=96;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=0.00
chr17	CG	SV	42569525	42569728	96	+	.	ID=4617;Type=complex;Left=chr2:132736921-132737286+;Right=chr17:42569525-42569728-;Distance=;DiscordantMatePairAlignments=96;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=0.00
chr2	CG	SV	132742434	132747162	287	.	.	ID=1452;Type=complex;Left=chr2:132742434-132743136-;Right=chr2:132746872-132747162-;Distance=4026;DiscordantMatePairAlignments=287;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	132742434	132743136	287	-	.	ID=1452;Type=complex;Left=chr2:132742434-132743136;Right=chr2:132746872-132747162
chr2	CG	SV	132746872	132747162	287	-	.	ID=1452;Type=complex;Left=chr2:132742434-132743136;Right=chr2:132746872-132747162
chr2	CG	SV	132747191	132747501	71	+	.	ID=3461;Type=complex;Left=chr2:132747191-132747501+;Right=chr12:36735016-36735176+;Distance=;DiscordantMatePairAlignments=71;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	36735016	36735176	71	+	.	ID=3461;Type=complex;Left=chr2:132747191-132747501+;Right=chr12:36735016-36735176+;Distance=;DiscordantMatePairAlignments=71;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	134176749	134177548	12	.	.	ID=3953;Type=deletion;Left=chr2:134176749-134176970+;Right=chr2:134177056-134177548+;Distance=307;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67901427 (chr2:134176749-134177056);Frequency=0.82
chr2	CG	SV	134176749	134176970	12	+	.	ID=3953;Type=deletion;Left=chr2:134176749-134176970;Right=chr2:134177056-134177548
chr2	CG	SV	134177056	134177548	12	+	.	ID=3953;Type=deletion;Left=chr2:134176749-134176970;Right=chr2:134177056-134177548
chr2	CG	SV	134260761	134261635	11	.	.	ID=3952;Type=deletion;Left=chr2:134260761-134261165+;Right=chr2:134261093-134261635+;Distance=332;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10524683 (chr2:134260744-134261076);Frequency=0.88
chr2	CG	SV	134260761	134261165	11	+	.	ID=3952;Type=deletion;Left=chr2:134260761-134261165;Right=chr2:134261093-134261635
chr2	CG	SV	134261093	134261635	11	+	.	ID=3952;Type=deletion;Left=chr2:134260761-134261165;Right=chr2:134261093-134261635
chr2	CG	SV	134683181	134687088	91	.	.	ID=3950;Type=deletion;Left=chr2:134683181-134683587+;Right=chr2:134686611-134687088+;Distance=3430;DiscordantMatePairAlignments=91;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67384749 (chr2:134683187-134686617);Frequency=0.94
chr2	CG	SV	134683181	134683587	91	+	.	ID=3950;Type=deletion;Left=chr2:134683181-134683587;Right=chr2:134686611-134687088
chr2	CG	SV	134686611	134687088	91	+	.	ID=3950;Type=deletion;Left=chr2:134683181-134683587;Right=chr2:134686611-134687088
chr2	CG	SV	141903703	142026286	16	.	.	ID=3947;Type=deletion;Left=chr2:141903703-141904097+;Right=chr2:142025961-142026286+;Distance=122258;DiscordantMatePairAlignments=16;LeftRepeat=L1PA11:LINE:L1;RightRepeat=;LeftGenes=NM_018557:-;RightGenes=NM_018557:-;XRef=;Frequency=0.00
chr2	CG	SV	141903703	141904097	16	+	.	ID=3947;Type=deletion;Left=chr2:141903703-141904097;Right=chr2:142025961-142026286
chr2	CG	SV	142025961	142026286	16	+	.	ID=3947;Type=deletion;Left=chr2:141903703-141904097;Right=chr2:142025961-142026286
chr2	CG	SV	142067473	142068295	16	.	.	ID=3946;Type=deletion;Left=chr2:142067473-142067944+;Right=chr2:142067798-142068295+;Distance=325;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=;LeftGenes=NM_018557:-;RightGenes=NM_018557:-;XRef=rs10525798 (chr2:142067473-142067798);Frequency=1.00
chr2	CG	SV	142067473	142067944	16	+	.	ID=3946;Type=deletion;Left=chr2:142067473-142067944;Right=chr2:142067798-142068295
chr2	CG	SV	142067798	142068295	16	+	.	ID=3946;Type=deletion;Left=chr2:142067473-142067944;Right=chr2:142067798-142068295
chr2	CG	SV	143151092	143151821	15	.	.	ID=3945;Type=deletion;Left=chr2:143151092-143151554+;Right=chr2:143151430-143151821+;Distance=338;DiscordantMatePairAlignments=15;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72376245 (chr2:143151075-143151413);Frequency=0.41
chr2	CG	SV	143151092	143151554	15	+	.	ID=3945;Type=deletion;Left=chr2:143151092-143151554;Right=chr2:143151430-143151821
chr2	CG	SV	143151430	143151821	15	+	.	ID=3945;Type=deletion;Left=chr2:143151092-143151554;Right=chr2:143151430-143151821
chr2	CG	SV	146579091	146593809	139	.	.	ID=3943;Type=deletion;Left=chr2:146579091-146579469+;Right=chr2:146593334-146593809+;Distance=14243;DiscordantMatePairAlignments=139;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=MLT1H-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr2	CG	SV	146579091	146579469	139	+	.	ID=3943;Type=deletion;Left=chr2:146579091-146579469;Right=chr2:146593334-146593809
chr2	CG	SV	146593334	146593809	139	+	.	ID=3943;Type=deletion;Left=chr2:146579091-146579469;Right=chr2:146593334-146593809
chr2	CG	SV	151611335	151612117	11	.	.	ID=3942;Type=deletion;Left=chr2:151611335-151611533+;Right=chr2:151611611-151612117+;Distance=276;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71973020 (chr2:151611335-151611611);Frequency=1.00
chr2	CG	SV	151611335	151611533	11	+	.	ID=3942;Type=deletion;Left=chr2:151611335-151611533;Right=chr2:151611611-151612117
chr2	CG	SV	151611611	151612117	11	+	.	ID=3942;Type=deletion;Left=chr2:151611335-151611533;Right=chr2:151611611-151612117
chr2	CG	SV	152325547	152326278	14	.	.	ID=3940;Type=deletion;Left=chr2:152325547-152325979+;Right=chr2:152325862-152326278+;Distance=315;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72556448 (chr2:152325534-152325849);Frequency=0.94
chr2	CG	SV	152325547	152325979	14	+	.	ID=3940;Type=deletion;Left=chr2:152325547-152325979;Right=chr2:152325862-152326278
chr2	CG	SV	152325862	152326278	14	+	.	ID=3940;Type=deletion;Left=chr2:152325547-152325979;Right=chr2:152325862-152326278
chr2	CG	SV	153168165	153169677	10	.	.	ID=4849;Type=complex;Left=chr2:153168165-153168503+;Right=chr2:153169338-153169677-;Distance=1512;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=NM_052905:+;RightGenes=NM_052905:+;XRef=;Frequency=0.29
chr2	CG	SV	153168165	153168503	10	+	.	ID=4849;Type=complex;Left=chr2:153168165-153168503;Right=chr2:153169338-153169677
chr2	CG	SV	153169338	153169677	10	+	.	ID=4849;Type=complex;Left=chr2:153168165-153168503;Right=chr2:153169338-153169677
chr2	CG	SV	153169001	153170034	13	.	.	ID=579;Type=complex;Left=chr2:153169001-153169341-;Right=chr2:153169694-153170034+;Distance=353;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=;LeftGenes=NM_052905:+;RightGenes=NM_052905:+;XRef=;Frequency=0.29
chr2	CG	SV	153169001	153169341	13	-	.	ID=579;Type=complex;Left=chr2:153169001-153169341;Right=chr2:153169694-153170034
chr2	CG	SV	153169694	153170034	13	-	.	ID=579;Type=complex;Left=chr2:153169001-153169341;Right=chr2:153169694-153170034
chr2	CG	SV	153504241	153508310	23	.	.	ID=3938;Type=deletion;Left=chr2:153504241-153504602+;Right=chr2:153507989-153508310+;Distance=3748;DiscordantMatePairAlignments=23;LeftRepeat=L1PA14:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr2	CG	SV	153504241	153504602	23	+	.	ID=3938;Type=deletion;Left=chr2:153504241-153504602;Right=chr2:153507989-153508310
chr2	CG	SV	153507989	153508310	23	+	.	ID=3938;Type=deletion;Left=chr2:153504241-153504602;Right=chr2:153507989-153508310
chr2	CG	SV	158141595	158142329	14	.	.	ID=3936;Type=deletion;Left=chr2:158141595-158141942+;Right=chr2:158141924-158142329+;Distance=329;DiscordantMatePairAlignments=14;LeftRepeat=AluYb9:SINE:Alu;Tandem T;RightRepeat=L1MEd:LINE:L1;LeftGenes=NM_001111031:-;NM_001111032:-;NM_001111033:-;NM_145259:-;RightGenes=NM_001111031:-;NM_001111032:-;NM_001111033:-;NM_145259:-;XRef=rs74164343 (chr2:158141595-158141924);Frequency=0.71
chr2	CG	SV	158141595	158141942	14	+	.	ID=3936;Type=deletion;Left=chr2:158141595-158141942;Right=chr2:158141924-158142329
chr2	CG	SV	158141924	158142329	14	+	.	ID=3936;Type=deletion;Left=chr2:158141595-158141942;Right=chr2:158141924-158142329
chr2	CG	SV	159857363	159860118	137	.	.	ID=3934;Type=deletion;Left=chr2:159857363-159857871+;Right=chr2:159859894-159860118+;Distance=2531;DiscordantMatePairAlignments=137;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66496159 (chr2:159857363-159859894);Frequency=1.00
chr2	CG	SV	159857363	159857871	137	+	.	ID=3934;Type=deletion;Left=chr2:159857363-159857871;Right=chr2:159859894-159860118
chr2	CG	SV	159859894	159860118	137	+	.	ID=3934;Type=deletion;Left=chr2:159857363-159857871;Right=chr2:159859894-159860118
chr2	CG	SV	160564109	160564878	17	.	.	ID=3933;Type=deletion;Left=chr2:160564109-160564577+;Right=chr2:160564432-160564878+;Distance=323;DiscordantMatePairAlignments=17;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_001007267:-;NM_007366:-;RightGenes=NM_001007267:-;NM_007366:-;XRef=rs10526630 (chr2:160564097-160564420);Frequency=0.94
chr2	CG	SV	160564109	160564577	17	+	.	ID=3933;Type=deletion;Left=chr2:160564109-160564577;Right=chr2:160564432-160564878
chr2	CG	SV	160564432	160564878	17	+	.	ID=3933;Type=deletion;Left=chr2:160564109-160564577;Right=chr2:160564432-160564878
chr2	CG	SV	161503856	161504626	11	.	.	ID=3932;Type=deletion;Left=chr2:161503856-161504120+;Right=chr2:161504180-161504626+;Distance=324;DiscordantMatePairAlignments=11;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10525205 (chr2:161503856-161504180);Frequency=1.00
chr2	CG	SV	161503856	161504120	11	+	.	ID=3932;Type=deletion;Left=chr2:161503856-161504120;Right=chr2:161504180-161504626
chr2	CG	SV	161504180	161504626	11	+	.	ID=3932;Type=deletion;Left=chr2:161503856-161504120;Right=chr2:161504180-161504626
chr2	CG	SV	162040517	162042651	10	.	.	ID=3931;Type=deletion;Left=chr2:162040517-162040794+;Right=chr2:162042291-162042651+;Distance=1774;DiscordantMatePairAlignments=10;LeftRepeat=L1PA10:LINE:L1;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67713568 (chr2:162040513-162042287);Frequency=0.76
chr2	CG	SV	162040517	162040794	10	+	.	ID=3931;Type=deletion;Left=chr2:162040517-162040794;Right=chr2:162042291-162042651
chr2	CG	SV	162042291	162042651	10	+	.	ID=3931;Type=deletion;Left=chr2:162040517-162040794;Right=chr2:162042291-162042651
chr2	CG	SV	168604067	168604824	13	.	.	ID=3928;Type=deletion;Left=chr2:168604067-168604488+;Right=chr2:168604387-168604824+;Distance=320;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=L1ME1:LINE:L1;LeftGenes=NM_013233:-;RightGenes=NM_013233:-;XRef=rs71905750 (chr2:168604052-168604372);Frequency=0.82
chr2	CG	SV	168604067	168604488	13	+	.	ID=3928;Type=deletion;Left=chr2:168604067-168604488;Right=chr2:168604387-168604824
chr2	CG	SV	168604387	168604824	13	+	.	ID=3928;Type=deletion;Left=chr2:168604067-168604488;Right=chr2:168604387-168604824
chr2	CG	SV	176054925	176061333	42	.	.	ID=3923;Type=deletion;Left=chr2:176054925-176055328+;Right=chr2:176060978-176061333+;Distance=6053;DiscordantMatePairAlignments=42;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68056211 (chr2:176054914-176060967);Frequency=0.35
chr2	CG	SV	176054925	176055328	42	+	.	ID=3923;Type=deletion;Left=chr2:176054925-176055328;Right=chr2:176060978-176061333
chr2	CG	SV	176060978	176061333	42	+	.	ID=3923;Type=deletion;Left=chr2:176054925-176055328;Right=chr2:176060978-176061333
chr2	CG	SV	176973891	176980793	51	.	.	ID=3922;Type=deletion;Left=chr2:176973891-176974173+;Right=chr2:176980290-176980793+;Distance=6399;DiscordantMatePairAlignments=51;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66861570 (chr2:176973891-176980290);Frequency=0.82
chr2	CG	SV	176973891	176974173	51	+	.	ID=3922;Type=deletion;Left=chr2:176973891-176974173;Right=chr2:176980290-176980793
chr2	CG	SV	176980290	176980793	51	+	.	ID=3922;Type=deletion;Left=chr2:176973891-176974173;Right=chr2:176980290-176980793
chr2	CG	SV	177081925	177094907	74	.	.	ID=4848;Type=complex;Left=chr2:177081925-177082416+;Right=chr2:177094513-177094907-;Distance=12982;DiscordantMatePairAlignments=74;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	177081925	177082416	74	+	.	ID=4848;Type=complex;Left=chr2:177081925-177082416;Right=chr2:177094513-177094907
chr2	CG	SV	177094513	177094907	74	+	.	ID=4848;Type=complex;Left=chr2:177081925-177082416;Right=chr2:177094513-177094907
chr2	CG	SV	177085279	177094657	94	.	.	ID=578;Type=complex;Left=chr2:177085279-177085681-;Right=chr2:177094247-177094657+;Distance=8566;DiscordantMatePairAlignments=94;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	177085279	177085681	94	-	.	ID=578;Type=complex;Left=chr2:177085279-177085681;Right=chr2:177094247-177094657
chr2	CG	SV	177094247	177094657	94	-	.	ID=578;Type=complex;Left=chr2:177085279-177085681;Right=chr2:177094247-177094657
chr2	CG	SV	177995883	177996684	43	.	.	ID=3921;Type=deletion;Left=chr2:177995883-177996302+;Right=chr2:177996307-177996684+;Distance=424;DiscordantMatePairAlignments=43;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_003659:+;RightGenes=NM_003659:+;XRef=rs67480529 (chr2:177995883-177996297);Frequency=1.00
chr2	CG	SV	177995883	177996302	43	+	.	ID=3921;Type=deletion;Left=chr2:177995883-177996302;Right=chr2:177996307-177996684
chr2	CG	SV	177996307	177996684	43	+	.	ID=3921;Type=deletion;Left=chr2:177995883-177996302;Right=chr2:177996307-177996684
chr2	CG	SV	181634082	181634863	11	.	.	ID=3920;Type=deletion;Left=chr2:181634082-181634567+;Right=chr2:181634404-181634863+;Distance=322;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_006357:+;NM_182678:+;RightGenes=NM_006357:+;NM_182678:+;XRef=rs68044234 (chr2:181634072-181634394);Frequency=0.82
chr2	CG	SV	181634082	181634567	11	+	.	ID=3920;Type=deletion;Left=chr2:181634082-181634567;Right=chr2:181634404-181634863
chr2	CG	SV	181634404	181634863	11	+	.	ID=3920;Type=deletion;Left=chr2:181634082-181634567;Right=chr2:181634404-181634863
chr2	CG	SV	182064228	182064982	27	.	.	ID=3919;Type=deletion;Left=chr2:182064228-182064650+;Right=chr2:182064543-182064982+;Distance=315;DiscordantMatePairAlignments=27;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=;LeftGenes=NM_000885:+;RightGenes=NM_000885:+;XRef=rs66936328 (chr2:182064228-182064543);Frequency=1.00
chr2	CG	SV	182064228	182064650	27	+	.	ID=3919;Type=deletion;Left=chr2:182064228-182064650;Right=chr2:182064543-182064982
chr2	CG	SV	182064543	182064982	27	+	.	ID=3919;Type=deletion;Left=chr2:182064228-182064650;Right=chr2:182064543-182064982
chr2	CG	SV	182273509	182274295	46	.	.	ID=3918;Type=deletion;Left=chr2:182273509-182273958+;Right=chr2:182273837-182274295+;Distance=328;DiscordantMatePairAlignments=46;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67398526 (chr2:182273485-182273813);Frequency=1.00
chr2	CG	SV	182273509	182273958	46	+	.	ID=3918;Type=deletion;Left=chr2:182273509-182273958;Right=chr2:182273837-182274295
chr2	CG	SV	182273837	182274295	46	+	.	ID=3918;Type=deletion;Left=chr2:182273509-182273958;Right=chr2:182273837-182274295
chr2	CG	SV	182565161	182566261	108	.	.	ID=3917;Type=deletion;Left=chr2:182565161-182565637+;Right=chr2:182565844-182566261+;Distance=683;DiscordantMatePairAlignments=108;LeftRepeat=L3b:LINE:CR1;RightRepeat=;LeftGenes=NM_001080545:+;RightGenes=NM_001080545:+;XRef=;Frequency=0.47
chr2	CG	SV	182565161	182565637	108	+	.	ID=3917;Type=deletion;Left=chr2:182565161-182565637;Right=chr2:182565844-182566261
chr2	CG	SV	182565844	182566261	108	+	.	ID=3917;Type=deletion;Left=chr2:182565161-182565637;Right=chr2:182565844-182566261
chr2	CG	SV	183958220	183958927	39	.	.	ID=3915;Type=deletion;Left=chr2:183958220-183958740+;Right=chr2:183958563-183958927+;Distance=343;DiscordantMatePairAlignments=39;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68117218 (chr2:183958211-183958554);Frequency=1.00
chr2	CG	SV	183958220	183958740	39	+	.	ID=3915;Type=deletion;Left=chr2:183958220-183958740;Right=chr2:183958563-183958927
chr2	CG	SV	183958563	183958927	39	+	.	ID=3915;Type=deletion;Left=chr2:183958220-183958740;Right=chr2:183958563-183958927
chr2	CG	SV	187923975	187924753	12	.	.	ID=3914;Type=deletion;Left=chr2:187923975-187924400+;Right=chr2:187924282-187924753+;Distance=307;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_005795:-;RightGenes=NM_005795:-;XRef=rs67050793 (chr2:187923975-187924282);Frequency=1.00
chr2	CG	SV	187923975	187924400	12	+	.	ID=3914;Type=deletion;Left=chr2:187923975-187924400;Right=chr2:187924282-187924753
chr2	CG	SV	187924282	187924753	12	+	.	ID=3914;Type=deletion;Left=chr2:187923975-187924400;Right=chr2:187924282-187924753
chr2	CG	SV	188827864	188829570	80	.	.	ID=3913;Type=deletion;Left=chr2:188827864-188828163+;Right=chr2:188829227-188829570+;Distance=1363;DiscordantMatePairAlignments=80;LeftRepeat=L1ME1:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr2	CG	SV	188827864	188828163	80	+	.	ID=3913;Type=deletion;Left=chr2:188827864-188828163;Right=chr2:188829227-188829570
chr2	CG	SV	188829227	188829570	80	+	.	ID=3913;Type=deletion;Left=chr2:188827864-188828163;Right=chr2:188829227-188829570
chr2	CG	SV	195923061	195923852	59	.	.	ID=3907;Type=deletion;Left=chr2:195923061-195923542+;Right=chr2:195923473-195923852+;Distance=412;DiscordantMatePairAlignments=59;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67052058 (chr2:195923059-195923471);Frequency=0.94
chr2	CG	SV	195923061	195923542	59	+	.	ID=3907;Type=deletion;Left=chr2:195923061-195923542;Right=chr2:195923473-195923852
chr2	CG	SV	195923473	195923852	59	+	.	ID=3907;Type=deletion;Left=chr2:195923061-195923542;Right=chr2:195923473-195923852
chr2	CG	SV	201854903	201858137	72	.	.	ID=3906;Type=deletion;Left=chr2:201854903-201855293+;Right=chr2:201857695-201858137+;Distance=2792;DiscordantMatePairAlignments=72;LeftRepeat=SVA:Other:Other;RightRepeat=;LeftGenes=NM_001080124:+;NM_001080125:+;NM_001228:+;NM_033355:+;NM_033356:+;RightGenes=NM_001080124:+;NM_001080125:+;NM_001228:+;NM_033355:+;NM_033356:+;XRef=rs66948615 (chr2:201854903-201857695);Frequency=0.71
chr2	CG	SV	201854903	201855293	72	+	.	ID=3906;Type=deletion;Left=chr2:201854903-201855293;Right=chr2:201857695-201858137
chr2	CG	SV	201857695	201858137	72	+	.	ID=3906;Type=deletion;Left=chr2:201854903-201855293;Right=chr2:201857695-201858137
chr2	CG	SV	206439444	206440312	53	.	.	ID=3903;Type=deletion;Left=chr2:206439444-206439868+;Right=chr2:206439767-206440312+;Distance=323;DiscordantMatePairAlignments=53;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6147135 (chr2:206439444-206439767);Frequency=1.00
chr2	CG	SV	206439444	206439868	53	+	.	ID=3903;Type=deletion;Left=chr2:206439444-206439868;Right=chr2:206439767-206440312
chr2	CG	SV	206439767	206440312	53	+	.	ID=3903;Type=deletion;Left=chr2:206439444-206439868;Right=chr2:206439767-206440312
chr2	CG	SV	208059399	208067837	16	.	.	ID=3901;Type=deletion;Left=chr2:208059399-208059809+;Right=chr2:208067614-208067837+;Distance=8215;DiscordantMatePairAlignments=16;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr2	CG	SV	208059399	208059809	16	+	.	ID=3901;Type=deletion;Left=chr2:208059399-208059809;Right=chr2:208067614-208067837
chr2	CG	SV	208067614	208067837	16	+	.	ID=3901;Type=deletion;Left=chr2:208059399-208059809;Right=chr2:208067614-208067837
chr2	CG	SV	208798701	208806057	19	.	.	ID=3896;Type=deletion;Left=chr2:208798701-208799283+;Right=chr2:208805688-208806057+;Distance=6987;DiscordantMatePairAlignments=19;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	208798701	208799283	19	+	.	ID=3896;Type=deletion;Left=chr2:208798701-208799283;Right=chr2:208805688-208806057
chr2	CG	SV	208805688	208806057	19	+	.	ID=3896;Type=deletion;Left=chr2:208798701-208799283;Right=chr2:208805688-208806057
chr2	CG	SV	216798177	216800905	27	.	.	ID=3893;Type=deletion;Left=chr2:216798177-216798693+;Right=chr2:216800745-216800905+;Distance=2568;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	216798177	216798693	27	+	.	ID=3893;Type=deletion;Left=chr2:216798177-216798693;Right=chr2:216800745-216800905
chr2	CG	SV	216800745	216800905	27	+	.	ID=3893;Type=deletion;Left=chr2:216798177-216798693;Right=chr2:216800745-216800905
chr2	CG	SV	219760652	219764644	19	.	.	ID=3891;Type=deletion;Left=chr2:219760652-219760972+;Right=chr2:219764202-219764644+;Distance=3550;DiscordantMatePairAlignments=19;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	219760652	219760972	19	+	.	ID=3891;Type=deletion;Left=chr2:219760652-219760972;Right=chr2:219764202-219764644
chr2	CG	SV	219764202	219764644	19	+	.	ID=3891;Type=deletion;Left=chr2:219760652-219760972;Right=chr2:219764202-219764644
chr2	CG	SV	221054181	221054784	17	.	.	ID=3887;Type=deletion;Left=chr2:221054181-221054576+;Right=chr2:221054509-221054784+;Distance=328;DiscordantMatePairAlignments=17;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs74164383 (chr2:221054181-221054509);Frequency=1.00
chr2	CG	SV	221054181	221054576	17	+	.	ID=3887;Type=deletion;Left=chr2:221054181-221054576;Right=chr2:221054509-221054784
chr2	CG	SV	221054509	221054784	17	+	.	ID=3887;Type=deletion;Left=chr2:221054181-221054576;Right=chr2:221054509-221054784
chr2	CG	SV	221793995	221798248	141	.	.	ID=3886;Type=deletion;Left=chr2:221793995-221794369+;Right=chr2:221797856-221798248+;Distance=3861;DiscordantMatePairAlignments=141;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	221793995	221794369	141	+	.	ID=3886;Type=deletion;Left=chr2:221793995-221794369;Right=chr2:221797856-221798248
chr2	CG	SV	221797856	221798248	141	+	.	ID=3886;Type=deletion;Left=chr2:221793995-221794369;Right=chr2:221797856-221798248
chr2	CG	SV	223468424	223471400	62	.	.	ID=3885;Type=deletion;Left=chr2:223468424-223468815+;Right=chr2:223470917-223471400+;Distance=2493;DiscordantMatePairAlignments=62;LeftRepeat=;RightRepeat=;LeftGenes=NM_004457:+;NM_203372:+;RightGenes=NM_004457:+;NM_203372:+;XRef=rs67178994 (chr2:223468422-223470915);Frequency=0.94
chr2	CG	SV	223468424	223468815	62	+	.	ID=3885;Type=deletion;Left=chr2:223468424-223468815;Right=chr2:223470917-223471400
chr2	CG	SV	223470917	223471400	62	+	.	ID=3885;Type=deletion;Left=chr2:223468424-223468815;Right=chr2:223470917-223471400
chr2	CG	SV	226873670	226879764	46	.	.	ID=3882;Type=deletion;Left=chr2:226873670-226873979+;Right=chr2:226879415-226879764+;Distance=5745;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72094991 (chr2:226873668-226879413);Frequency=0.65
chr2	CG	SV	226873670	226873979	46	+	.	ID=3882;Type=deletion;Left=chr2:226873670-226873979;Right=chr2:226879415-226879764
chr2	CG	SV	226879415	226879764	46	+	.	ID=3882;Type=deletion;Left=chr2:226873670-226873979;Right=chr2:226879415-226879764
chr2	CG	SV	231033553	231034324	34	.	.	ID=3881;Type=deletion;Left=chr2:231033553-231034073+;Right=chr2:231033896-231034324+;Distance=343;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_001080391:+;NM_003113:+;RightGenes=NM_001080391:+;NM_003113:+;XRef=rs10527293 (chr2:231033538-231033881);Frequency=0.94
chr2	CG	SV	231033553	231034073	34	+	.	ID=3881;Type=deletion;Left=chr2:231033553-231034073;Right=chr2:231033896-231034324
chr2	CG	SV	231033896	231034324	34	+	.	ID=3881;Type=deletion;Left=chr2:231033553-231034073;Right=chr2:231033896-231034324
chr2	CG	SV	231704439	231705137	13	.	.	ID=3880;Type=deletion;Left=chr2:231704439-231704894+;Right=chr2:231704763-231705137+;Distance=324;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_002807:+;RightGenes=NM_002807:+;XRef=rs35800789 (chr2:231704420-231704744);Frequency=0.71
chr2	CG	SV	231704439	231704894	13	+	.	ID=3880;Type=deletion;Left=chr2:231704439-231704894;Right=chr2:231704763-231705137
chr2	CG	SV	231704763	231705137	13	+	.	ID=3880;Type=deletion;Left=chr2:231704439-231704894;Right=chr2:231704763-231705137
chr2	CG	SV	232809146	232938490	12	.	.	ID=3879;Type=deletion;Left=chr2:232809146-232809536+;Right=chr2:232938046-232938490+;Distance=128900;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_152383:+;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	232809146	232809536	12	+	.	ID=3879;Type=deletion;Left=chr2:232809146-232809536;Right=chr2:232938046-232938490
chr2	CG	SV	232938046	232938490	12	+	.	ID=3879;Type=deletion;Left=chr2:232809146-232809536;Right=chr2:232938046-232938490
chr2	CG	SV	237596582	237612453	95	.	.	ID=3876;Type=deletion;Left=chr2:237596582-237597005+;Right=chr2:237611957-237612453+;Distance=15375;DiscordantMatePairAlignments=95;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	237596582	237597005	95	+	.	ID=3876;Type=deletion;Left=chr2:237596582-237597005;Right=chr2:237611957-237612453
chr2	CG	SV	237611957	237612453	95	+	.	ID=3876;Type=deletion;Left=chr2:237596582-237597005;Right=chr2:237611957-237612453
chr2	CG	SV	240607627	240608436	27	.	.	ID=3874;Type=deletion;Left=chr2:240607627-240607996+;Right=chr2:240607949-240608436+;Distance=322;DiscordantMatePairAlignments=27;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_004544:-;RightGenes=NM_004544:-;XRef=rs10705194 (chr2:240607627-240607949);Frequency=0.82
chr2	CG	SV	240607627	240607996	27	+	.	ID=3874;Type=deletion;Left=chr2:240607627-240607996;Right=chr2:240607949-240608436
chr2	CG	SV	240607949	240608436	27	+	.	ID=3874;Type=deletion;Left=chr2:240607627-240607996;Right=chr2:240607949-240608436
chr2	CG	SV	240630234	240631027	13	.	.	ID=3873;Type=deletion;Left=chr2:240630234-240630643+;Right=chr2:240630850-240631027+;Distance=616;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 14;Tandem period 56;Tandem period 84;RightRepeat=Self chain;Tandem period 14;Tandem period 56;Tandem period 84;LeftGenes=NM_001080835:-;RightGenes=NM_001080835:-;XRef=;Frequency=0.59
chr2	CG	SV	240630234	240630643	13	+	.	ID=3873;Type=deletion;Left=chr2:240630234-240630643;Right=chr2:240630850-240631027
chr2	CG	SV	240630850	240631027	13	+	.	ID=3873;Type=deletion;Left=chr2:240630234-240630643;Right=chr2:240630850-240631027
chr2	CG	SV	242154776	242156249	57	.	.	ID=3872;Type=deletion;Left=chr2:242154776-242155096+;Right=chr2:242156007-242156249+;Distance=1231;DiscordantMatePairAlignments=57;LeftRepeat=Self chain;RightRepeat=L1MB5:LINE:L1;Self chain;LeftGenes=NM_032515:+;RightGenes=NM_032515:+;XRef=rs72482950 (chr2:242154674-242155799);Frequency=0.45
chr2	CG	SV	242154776	242155096	57	+	.	ID=3872;Type=deletion;Left=chr2:242154776-242155096;Right=chr2:242156007-242156249
chr2	CG	SV	242156007	242156249	57	+	.	ID=3872;Type=deletion;Left=chr2:242154776-242155096;Right=chr2:242156007-242156249
chr3	CG	SV	636725	637449	15	.	.	ID=3871;Type=deletion;Left=chr3:636725-637213+;Right=chr3:637032-637449+;Distance=307;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;SegDup;RightRepeat=SegDup;LeftGenes=;RightGenes=;XRef=rs6147679 (chr3:636710-637017);Frequency=1.00
chr3	CG	SV	636725	637213	15	+	.	ID=3871;Type=deletion;Left=chr3:636725-637213;Right=chr3:637032-637449
chr3	CG	SV	637032	637449	15	+	.	ID=3871;Type=deletion;Left=chr3:636725-637213;Right=chr3:637032-637449
chr3	CG	SV	1191138	1192892	18	.	.	ID=1442;Type=tandem-duplication;Left=chr3:1191138-1191710-;Right=chr3:1191989-1192892-;Distance=1182;DiscordantMatePairAlignments=18;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSp:SINE:Alu;LeftGenes=NM_014461:+;RightGenes=NM_014461:+;XRef=;Frequency=0.12
chr3	CG	SV	1191138	1191710	18	-	.	ID=1442;Type=tandem-duplication;Left=chr3:1191138-1191710;Right=chr3:1191989-1192892
chr3	CG	SV	1191989	1192892	18	-	.	ID=1442;Type=tandem-duplication;Left=chr3:1191138-1191710;Right=chr3:1191989-1192892
chr3	CG	SV	2286614	2287353	11	.	.	ID=3869;Type=deletion;Left=chr3:2286614-2286963+;Right=chr3:2286951-2287353+;Distance=337;DiscordantMatePairAlignments=11;LeftRepeat=AluYb9:SINE:Alu;Tandem TTTA;RightRepeat=L1PA15:LINE:L1;LeftGenes=NM_175607:+;RightGenes=NM_175607:+;XRef=rs67422793 (chr3:2286589-2286937);Frequency=0.88
chr3	CG	SV	2286614	2286963	11	+	.	ID=3869;Type=deletion;Left=chr3:2286614-2286963;Right=chr3:2286951-2287353
chr3	CG	SV	2286951	2287353	11	+	.	ID=3869;Type=deletion;Left=chr3:2286614-2286963;Right=chr3:2286951-2287353
chr3	CG	SV	2608041	2608795	11	.	.	ID=3868;Type=deletion;Left=chr3:2608041-2608488+;Right=chr3:2608362-2608795+;Distance=321;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_175607:+;RightGenes=NM_175607:+;XRef=rs10527835 (chr3:2608026-2608347);Frequency=0.53
chr3	CG	SV	2608041	2608488	11	+	.	ID=3868;Type=deletion;Left=chr3:2608041-2608488;Right=chr3:2608362-2608795
chr3	CG	SV	2608362	2608795	11	+	.	ID=3868;Type=deletion;Left=chr3:2608041-2608488;Right=chr3:2608362-2608795
chr3	CG	SV	4041937	4045020	64	.	.	ID=3867;Type=deletion;Left=chr3:4041937-4042310+;Right=chr3:4044568-4045020+;Distance=2631;DiscordantMatePairAlignments=64;LeftRepeat=(TA)n:Simple_repeat:Simple_repeat;Tandem AT;RightRepeat=MER33:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs67793263 (chr3:4041924-4044555);Frequency=1.00
chr3	CG	SV	4041937	4042310	64	+	.	ID=3867;Type=deletion;Left=chr3:4041937-4042310;Right=chr3:4044568-4045020
chr3	CG	SV	4044568	4045020	64	+	.	ID=3867;Type=deletion;Left=chr3:4041937-4042310;Right=chr3:4044568-4045020
chr3	CG	SV	8300639	8302255	59	.	.	ID=3865;Type=deletion;Left=chr3:8300639-8301096+;Right=chr3:8301812-8302255+;Distance=1173;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71052654 (chr3:8300639-8301812);Frequency=0.59
chr3	CG	SV	8300639	8301096	59	+	.	ID=3865;Type=deletion;Left=chr3:8300639-8301096;Right=chr3:8301812-8302255
chr3	CG	SV	8301812	8302255	59	+	.	ID=3865;Type=deletion;Left=chr3:8300639-8301096;Right=chr3:8301812-8302255
chr3	CG	SV	10372475	10373203	44	.	.	ID=3862;Type=complex;Left=chr3:10372475-10372950+;Right=chr3:10372824-10373203+;Distance=349;DiscordantMatePairAlignments=44;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_001001331:-;NM_001683:-;RightGenes=NM_001001331:-;NM_001683:-;XRef=;Frequency=1.00
chr3	CG	SV	10372475	10372950	44	+	.	ID=3862;Type=complex;Left=chr3:10372475-10372950;Right=chr3:10372824-10373203
chr3	CG	SV	10372824	10373203	44	+	.	ID=3862;Type=complex;Left=chr3:10372475-10372950;Right=chr3:10372824-10373203
chr3	CG	SV	10372475	10373268	55	.	.	ID=3863;Type=complex;Left=chr3:10372475-10372865+;Right=chr3:10372839-10373268+;Distance=364;DiscordantMatePairAlignments=55;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TG;LeftGenes=NM_001001331:-;NM_001683:-;RightGenes=NM_001001331:-;NM_001683:-;XRef=;Frequency=1.00
chr3	CG	SV	10372475	10372865	55	+	.	ID=3863;Type=complex;Left=chr3:10372475-10372865;Right=chr3:10372839-10373268
chr3	CG	SV	10372839	10373268	55	+	.	ID=3863;Type=complex;Left=chr3:10372475-10372865;Right=chr3:10372839-10373268
chr3	CG	SV	21432512	21433212	22	.	.	ID=3857;Type=deletion;Left=chr3:21432512-21433002+;Right=chr3:21432835-21433212+;Distance=323;DiscordantMatePairAlignments=22;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67452587 (chr3:21432512-21432835);Frequency=0.88
chr3	CG	SV	21432512	21433002	22	+	.	ID=3857;Type=deletion;Left=chr3:21432512-21433002;Right=chr3:21432835-21433212
chr3	CG	SV	21432835	21433212	22	+	.	ID=3857;Type=deletion;Left=chr3:21432512-21433002;Right=chr3:21432835-21433212
chr3	CG	SV	22067365	22073294	92	.	.	ID=3856;Type=deletion;Left=chr3:22067365-22067804+;Right=chr3:22072813-22073294+;Distance=5448;DiscordantMatePairAlignments=92;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66720172 (chr3:22067351-22072799);Frequency=0.88
chr3	CG	SV	22067365	22067804	92	+	.	ID=3856;Type=deletion;Left=chr3:22067365-22067804;Right=chr3:22072813-22073294
chr3	CG	SV	22072813	22073294	92	+	.	ID=3856;Type=deletion;Left=chr3:22067365-22067804;Right=chr3:22072813-22073294
chr3	CG	SV	23739077	23739793	20	.	.	ID=3855;Type=deletion;Left=chr3:23739077-23739422+;Right=chr3:23739407-23739793+;Distance=330;DiscordantMatePairAlignments=20;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10705792 (chr3:23739077-23739407);Frequency=0.65
chr3	CG	SV	23739077	23739422	20	+	.	ID=3855;Type=deletion;Left=chr3:23739077-23739422;Right=chr3:23739407-23739793
chr3	CG	SV	23739407	23739793	20	+	.	ID=3855;Type=deletion;Left=chr3:23739077-23739422;Right=chr3:23739407-23739793
chr3	CG	SV	25005891	25007672	121	.	.	ID=3853;Type=deletion;Left=chr3:25005891-25006176+;Right=chr3:25007253-25007672+;Distance=1362;DiscordantMatePairAlignments=121;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=L1ME3B:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72404999 (chr3:25005891-25007246);Frequency=0.65
chr3	CG	SV	25005891	25006176	121	+	.	ID=3853;Type=deletion;Left=chr3:25005891-25006176;Right=chr3:25007253-25007672
chr3	CG	SV	25007253	25007672	121	+	.	ID=3853;Type=deletion;Left=chr3:25005891-25006176;Right=chr3:25007253-25007672
chr3	CG	SV	26425974	26427728	131	.	.	ID=3852;Type=deletion;Left=chr3:26425974-26426506+;Right=chr3:26427303-26427728+;Distance=1329;DiscordantMatePairAlignments=131;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66805914 (chr3:26425974-26427303);Frequency=0.94
chr3	CG	SV	26425974	26426506	131	+	.	ID=3852;Type=deletion;Left=chr3:26425974-26426506;Right=chr3:26427303-26427728
chr3	CG	SV	26427303	26427728	131	+	.	ID=3852;Type=deletion;Left=chr3:26425974-26426506;Right=chr3:26427303-26427728
chr3	CG	SV	32077056	32083392	137	.	.	ID=3850;Type=deletion;Left=chr3:32077056-32077499+;Right=chr3:32082889-32083392+;Distance=5833;DiscordantMatePairAlignments=137;LeftRepeat=;RightRepeat=MER31B:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs67265896 (chr3:32077056-32082889);Frequency=0.94
chr3	CG	SV	32077056	32077499	137	+	.	ID=3850;Type=deletion;Left=chr3:32077056-32077499;Right=chr3:32082889-32083392
chr3	CG	SV	32082889	32083392	137	+	.	ID=3850;Type=deletion;Left=chr3:32077056-32077499;Right=chr3:32082889-32083392
chr3	CG	SV	32176833	32177541	25	.	.	ID=3849;Type=deletion;Left=chr3:32176833-32177319+;Right=chr3:32177165-32177541+;Distance=332;DiscordantMatePairAlignments=25;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Tandem GGAT;RightRepeat=;LeftGenes=NM_015141:+;RightGenes=NM_015141:+;XRef=rs72009600 (chr3:32176730-32177061);Frequency=0.47
chr3	CG	SV	32176833	32177319	25	+	.	ID=3849;Type=deletion;Left=chr3:32176833-32177319;Right=chr3:32177165-32177541
chr3	CG	SV	32177165	32177541	25	+	.	ID=3849;Type=deletion;Left=chr3:32176833-32177319;Right=chr3:32177165-32177541
chr3	CG	SV	32781815	32783384	26	.	.	ID=3847;Type=deletion;Left=chr3:32781815-32782273+;Right=chr3:32783130-32783384+;Distance=1315;DiscordantMatePairAlignments=26;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_015442:+;RightGenes=NM_015442:+;XRef=rs71052665 (chr3:32781767-32783082);Frequency=0.94
chr3	CG	SV	32781815	32782273	26	+	.	ID=3847;Type=deletion;Left=chr3:32781815-32782273;Right=chr3:32783130-32783384
chr3	CG	SV	32783130	32783384	26	+	.	ID=3847;Type=deletion;Left=chr3:32781815-32782273;Right=chr3:32783130-32783384
chr3	CG	SV	33528209	33529187	15	.	.	ID=3846;Type=deletion;Left=chr3:33528209-33528588+;Right=chr3:33529095-33529187+;Distance=886;DiscordantMatePairAlignments=15;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_015097:-;RightGenes=NM_015097:-;XRef=;Frequency=0.82
chr3	CG	SV	33528209	33528588	15	+	.	ID=3846;Type=deletion;Left=chr3:33528209-33528588;Right=chr3:33529095-33529187
chr3	CG	SV	33529095	33529187	15	+	.	ID=3846;Type=deletion;Left=chr3:33528209-33528588;Right=chr3:33529095-33529187
chr3	CG	SV	35026675	35027439	15	.	.	ID=3845;Type=deletion;Left=chr3:35026675-35027124+;Right=chr3:35027003-35027439+;Distance=328;DiscordantMatePairAlignments=15;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67321919 (chr3:35026667-35026995);Frequency=0.94
chr3	CG	SV	35026675	35027124	15	+	.	ID=3845;Type=deletion;Left=chr3:35026675-35027124;Right=chr3:35027003-35027439
chr3	CG	SV	35027003	35027439	15	+	.	ID=3845;Type=deletion;Left=chr3:35026675-35027124;Right=chr3:35027003-35027439
chr3	CG	SV	36083138	36083909	18	.	.	ID=3844;Type=deletion;Left=chr3:36083138-36083643+;Right=chr3:36083456-36083909+;Distance=318;DiscordantMatePairAlignments=18;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=MLT1C:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs66578426 (chr3:36083124-36083442);Frequency=0.94
chr3	CG	SV	36083138	36083643	18	+	.	ID=3844;Type=deletion;Left=chr3:36083138-36083643;Right=chr3:36083456-36083909
chr3	CG	SV	36083456	36083909	18	+	.	ID=3844;Type=deletion;Left=chr3:36083138-36083643;Right=chr3:36083456-36083909
chr3	CG	SV	42813377	42816286	46	.	.	ID=3843;Type=deletion;Left=chr3:42813377-42813791+;Right=chr3:42815831-42816286+;Distance=2454;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=LTR8:LTR:ERV1;LeftGenes=NM_001099668:-;NM_001099669:-;NM_014056:-;RightGenes=NM_001099668:-;NM_001099669:-;NM_014056:-;XRef=rs71052669 (chr3:42813377-42815831);Frequency=1.00
chr3	CG	SV	42813377	42813791	46	+	.	ID=3843;Type=deletion;Left=chr3:42813377-42813791;Right=chr3:42815831-42816286
chr3	CG	SV	42815831	42816286	46	+	.	ID=3843;Type=deletion;Left=chr3:42813377-42813791;Right=chr3:42815831-42816286
chr3	CG	SV	43006105	43006707	22	.	.	ID=3842;Type=deletion;Left=chr3:43006105-43006593+;Right=chr3:43006433-43006707+;Distance=328;DiscordantMatePairAlignments=22;LeftRepeat=;RightRepeat=;LeftGenes=NM_001129908:+;RightGenes=NM_001129908:+;XRef=rs67857491 (chr3:43006096-43006424);Frequency=1.00
chr3	CG	SV	43006105	43006593	22	+	.	ID=3842;Type=deletion;Left=chr3:43006105-43006593;Right=chr3:43006433-43006707
chr3	CG	SV	43006433	43006707	22	+	.	ID=3842;Type=deletion;Left=chr3:43006105-43006593;Right=chr3:43006433-43006707
chr3	CG	SV	44715972	44716985	18	.	.	ID=4846;Type=complex;Left=chr3:44715972-44716093+;Right=chr3:44716803-44716985-;Distance=1013;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	44715972	44716093	18	+	.	ID=4846;Type=complex;Left=chr3:44715972-44716093;Right=chr3:44716803-44716985
chr3	CG	SV	44716803	44716985	18	+	.	ID=4846;Type=complex;Left=chr3:44715972-44716093;Right=chr3:44716803-44716985
chr3	CG	SV	44715496	44717494	32	.	.	ID=576;Type=complex;Left=chr3:44715496-44715994-;Right=chr3:44717289-44717494+;Distance=1295;DiscordantMatePairAlignments=32;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	44715496	44715994	32	-	.	ID=576;Type=complex;Left=chr3:44715496-44715994;Right=chr3:44717289-44717494
chr3	CG	SV	44717289	44717494	32	-	.	ID=576;Type=complex;Left=chr3:44715496-44715994;Right=chr3:44717289-44717494
chr3	CG	SV	45584922	45585774	73	.	.	ID=3841;Type=deletion;Left=chr3:45584922-45585399+;Right=chr3:45585338-45585774+;Distance=416;DiscordantMatePairAlignments=73;LeftRepeat=L1PA14:LINE:L1;RightRepeat=L1PA14:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71052671 (chr3:45584851-45585267);Frequency=1.00
chr3	CG	SV	45584922	45585399	73	+	.	ID=3841;Type=deletion;Left=chr3:45584922-45585399;Right=chr3:45585338-45585774
chr3	CG	SV	45585338	45585774	73	+	.	ID=3841;Type=deletion;Left=chr3:45584922-45585399;Right=chr3:45585338-45585774
chr3	CG	SV	47465672	47468906	134	.	.	ID=3838;Type=deletion;Left=chr3:47465672-47466094+;Right=chr3:47468445-47468906+;Distance=2773;DiscordantMatePairAlignments=134;LeftRepeat=L1MD2:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=NM_012235:-;RightGenes=NM_012235:-;XRef=rs71996089 (chr3:47465671-47468444);Frequency=0.47
chr3	CG	SV	47465672	47466094	134	+	.	ID=3838;Type=deletion;Left=chr3:47465672-47466094;Right=chr3:47468445-47468906
chr3	CG	SV	47468445	47468906	134	+	.	ID=3838;Type=deletion;Left=chr3:47465672-47466094;Right=chr3:47468445-47468906
chr3	CG	SV	49469291	49469973	11	.	.	ID=3835;Type=complex;Left=chr3:49469291-49469743+;Right=chr3:49469620-49469973+;Distance=329;DiscordantMatePairAlignments=11;LeftRepeat=MIRb:SINE:MIR;Tandem T;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs6147818 (chr3:49469280-49469609);Frequency=1.00
chr3	CG	SV	49469291	49469743	11	+	.	ID=3835;Type=complex;Left=chr3:49469291-49469743;Right=chr3:49469620-49469973
chr3	CG	SV	49469620	49469973	11	+	.	ID=3835;Type=complex;Left=chr3:49469291-49469743;Right=chr3:49469620-49469973
chr3	CG	SV	49469291	49470047	41	.	.	ID=3836;Type=complex;Left=chr3:49469291-49469688+;Right=chr3:49469620-49470047+;Distance=329;DiscordantMatePairAlignments=41;LeftRepeat=MIRb:SINE:MIR;Tandem T;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66794416 (chr3:49469291-49469620);Frequency=1.00
chr3	CG	SV	49469291	49469688	41	+	.	ID=3836;Type=complex;Left=chr3:49469291-49469688;Right=chr3:49469620-49470047
chr3	CG	SV	49469620	49470047	41	+	.	ID=3836;Type=complex;Left=chr3:49469291-49469688;Right=chr3:49469620-49470047
chr3	CG	SV	63109897	63110795	112	.	.	ID=3831;Type=deletion;Left=chr3:63109897-63110444+;Right=chr3:63110350-63110795+;Distance=453;DiscordantMatePairAlignments=112;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs68090124 (chr3:63109897-63110350);Frequency=0.00
chr3	CG	SV	63109897	63110444	112	+	.	ID=3831;Type=deletion;Left=chr3:63109897-63110444;Right=chr3:63110350-63110795
chr3	CG	SV	63110350	63110795	112	+	.	ID=3831;Type=deletion;Left=chr3:63109897-63110444;Right=chr3:63110350-63110795
chr3	CG	SV	65092938	65095126	60	.	.	ID=3830;Type=deletion;Left=chr3:65092938-65093411+;Right=chr3:65094810-65095126+;Distance=1872;DiscordantMatePairAlignments=60;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr3	CG	SV	65092938	65093411	60	+	.	ID=3830;Type=deletion;Left=chr3:65092938-65093411;Right=chr3:65094810-65095126
chr3	CG	SV	65094810	65095126	60	+	.	ID=3830;Type=deletion;Left=chr3:65092938-65093411;Right=chr3:65094810-65095126
chr3	CG	SV	66034504	66035576	21	.	.	ID=1437;Type=tandem-duplication;Left=chr3:66034504-66034969-;Right=chr3:66035277-66035576-;Distance=607;DiscordantMatePairAlignments=21;LeftRepeat=Alu:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr3	CG	SV	66034504	66034969	21	-	.	ID=1437;Type=tandem-duplication;Left=chr3:66034504-66034969;Right=chr3:66035277-66035576
chr3	CG	SV	66035277	66035576	21	-	.	ID=1437;Type=tandem-duplication;Left=chr3:66034504-66034969;Right=chr3:66035277-66035576
chr3	CG	SV	67576386	67579865	10	.	.	ID=3828;Type=deletion;Left=chr3:67576386-67576810+;Right=chr3:67579490-67579865+;Distance=3104;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=NM_003848:-;RightGenes=NM_003848:-;XRef=rs71052690 (chr3:67576398-67579502);Frequency=1.00
chr3	CG	SV	67576386	67576810	10	+	.	ID=3828;Type=deletion;Left=chr3:67576386-67576810;Right=chr3:67579490-67579865
chr3	CG	SV	67579490	67579865	10	+	.	ID=3828;Type=deletion;Left=chr3:67576386-67576810;Right=chr3:67579490-67579865
chr3	CG	SV	68822380	68830950	39	.	.	ID=3827;Type=deletion;Left=chr3:68822380-68822778+;Right=chr3:68830555-68830950+;Distance=8175;DiscordantMatePairAlignments=39;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67150556 (chr3:68822377-68830553);Frequency=0.88
chr3	CG	SV	68822380	68822778	39	+	.	ID=3827;Type=deletion;Left=chr3:68822380-68822778;Right=chr3:68830555-68830950
chr3	CG	SV	68830555	68830950	39	+	.	ID=3827;Type=deletion;Left=chr3:68822380-68822778;Right=chr3:68830555-68830950
chr3	CG	SV	70497811	70498542	11	.	.	ID=3824;Type=deletion;Left=chr3:70497811-70498316+;Right=chr3:70498146-70498542+;Distance=335;DiscordantMatePairAlignments=11;LeftRepeat=L1MC3:LINE:L1;Tandem T;RightRepeat=L1MC3:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71052691 (chr3:70497811-70498146);Frequency=0.88
chr3	CG	SV	70497811	70498316	11	+	.	ID=3824;Type=deletion;Left=chr3:70497811-70498316;Right=chr3:70498146-70498542
chr3	CG	SV	70498146	70498542	11	+	.	ID=3824;Type=deletion;Left=chr3:70497811-70498316;Right=chr3:70498146-70498542
chr3	CG	SV	75359579	75361914	55	.	.	ID=3822;Type=deletion;Left=chr3:75359579-75359984+;Right=chr3:75361608-75361914+;Distance=2029;DiscordantMatePairAlignments=55;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72396976 (chr3:75359579-75361608);Frequency=1.00
chr3	CG	SV	75359579	75359984	55	+	.	ID=3822;Type=deletion;Left=chr3:75359579-75359984;Right=chr3:75361608-75361914
chr3	CG	SV	75361608	75361914	55	+	.	ID=3822;Type=deletion;Left=chr3:75359579-75359984;Right=chr3:75361608-75361914
chr3	CG	SV	75869985	75870747	18	.	.	ID=3818;Type=deletion;Left=chr3:75869985-75870344+;Right=chr3:75870489-75870747+;Distance=504;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;Tandem period 84;RightRepeat=Self chain;LeftGenes=NM_001128223:-;RightGenes=NM_001128223:-;XRef=;Frequency=0.88
chr3	CG	SV	75869985	75870344	18	+	.	ID=3818;Type=deletion;Left=chr3:75869985-75870344;Right=chr3:75870489-75870747
chr3	CG	SV	75870489	75870747	18	+	.	ID=3818;Type=deletion;Left=chr3:75869985-75870344;Right=chr3:75870489-75870747
chr3	CG	SV	76097046	76097427	44	.	.	ID=1435;Type=tandem-duplication;Left=chr3:76097046-76097246-;Right=chr3:76097266-76097427-;Distance=181;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	76097046	76097246	44	-	.	ID=1435;Type=tandem-duplication;Left=chr3:76097046-76097246;Right=chr3:76097266-76097427
chr3	CG	SV	76097266	76097427	44	-	.	ID=1435;Type=tandem-duplication;Left=chr3:76097046-76097246;Right=chr3:76097266-76097427
chr3	CG	SV	76901816	76969869	60	.	.	ID=3816;Type=deletion;Left=chr3:76901816-76902240+;Right=chr3:76969495-76969869+;Distance=67679;DiscordantMatePairAlignments=60;LeftRepeat=;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	76901816	76902240	60	+	.	ID=3816;Type=deletion;Left=chr3:76901816-76902240;Right=chr3:76969495-76969869
chr3	CG	SV	76969495	76969869	60	+	.	ID=3816;Type=deletion;Left=chr3:76901816-76902240;Right=chr3:76969495-76969869
chr3	CG	SV	78862113	78862883	16	.	.	ID=3815;Type=deletion;Left=chr3:78862113-78862598+;Right=chr3:78862413-78862883+;Distance=300;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=;LeftGenes=NM_001145844:-;NM_001145845:-;NM_002941:-;NM_133631:-;RightGenes=NM_001145844:-;NM_001145845:-;NM_002941:-;NM_133631:-;XRef=rs6147914 (chr3:78862113-78862413);Frequency=0.82
chr3	CG	SV	78862113	78862598	16	+	.	ID=3815;Type=deletion;Left=chr3:78862113-78862598;Right=chr3:78862413-78862883
chr3	CG	SV	78862413	78862883	16	+	.	ID=3815;Type=deletion;Left=chr3:78862113-78862598;Right=chr3:78862413-78862883
chr3	CG	SV	81008004	81009732	92	.	.	ID=3814;Type=deletion;Left=chr3:81008004-81008387+;Right=chr3:81009297-81009732+;Distance=1293;DiscordantMatePairAlignments=92;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71052702 (chr3:81008004-81009297);Frequency=0.88
chr3	CG	SV	81008004	81008387	92	+	.	ID=3814;Type=deletion;Left=chr3:81008004-81008387;Right=chr3:81009297-81009732
chr3	CG	SV	81009297	81009732	92	+	.	ID=3814;Type=deletion;Left=chr3:81008004-81008387;Right=chr3:81009297-81009732
chr3	CG	SV	83935818	83938420	29	.	.	ID=3812;Type=deletion;Left=chr3:83935818-83936164+;Right=chr3:83938052-83938420+;Distance=2234;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67708183 (chr3:83935805-83938039);Frequency=0.94
chr3	CG	SV	83935818	83936164	29	+	.	ID=3812;Type=deletion;Left=chr3:83935818-83936164;Right=chr3:83938052-83938420
chr3	CG	SV	83938052	83938420	29	+	.	ID=3812;Type=deletion;Left=chr3:83935818-83936164;Right=chr3:83938052-83938420
chr3	CG	SV	84187632	84190481	42	.	.	ID=3811;Type=deletion;Left=chr3:84187632-84188029+;Right=chr3:84190074-84190481+;Distance=2442;DiscordantMatePairAlignments=42;LeftRepeat=L1MC1:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr3	CG	SV	84187632	84188029	42	+	.	ID=3811;Type=deletion;Left=chr3:84187632-84188029;Right=chr3:84190074-84190481
chr3	CG	SV	84190074	84190481	42	+	.	ID=3811;Type=deletion;Left=chr3:84187632-84188029;Right=chr3:84190074-84190481
chr3	CG	SV	86296096	86296852	11	.	.	ID=3810;Type=deletion;Left=chr3:86296096-86296544+;Right=chr3:86296413-86296852+;Distance=317;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=MER65C:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs72351114 (chr3:86296093-86296410);Frequency=0.35
chr3	CG	SV	86296096	86296544	11	+	.	ID=3810;Type=deletion;Left=chr3:86296096-86296544;Right=chr3:86296413-86296852
chr3	CG	SV	86296413	86296852	11	+	.	ID=3810;Type=deletion;Left=chr3:86296096-86296544;Right=chr3:86296413-86296852
chr3	CG	SV	100381763	100385502	46	.	.	ID=3807;Type=deletion;Left=chr3:100381763-100382172+;Right=chr3:100385091-100385502+;Distance=3328;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=L1ME2:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71056111 (chr3:100381750-100385079);Frequency=0.82
chr3	CG	SV	100381763	100382172	46	+	.	ID=3807;Type=deletion;Left=chr3:100381763-100382172;Right=chr3:100385091-100385502
chr3	CG	SV	100385091	100385502	46	+	.	ID=3807;Type=deletion;Left=chr3:100381763-100382172;Right=chr3:100385091-100385502
chr3	CG	SV	100426496	100432553	18	.	.	ID=3806;Type=deletion;Left=chr3:100426496-100426890+;Right=chr3:100432208-100432553+;Distance=5712;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=L1PA15:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr3	CG	SV	100426496	100426890	18	+	.	ID=3806;Type=deletion;Left=chr3:100426496-100426890;Right=chr3:100432208-100432553
chr3	CG	SV	100432208	100432553	18	+	.	ID=3806;Type=deletion;Left=chr3:100426496-100426890;Right=chr3:100432208-100432553
chr3	CG	SV	100520144	100520729	14	.	.	ID=3805;Type=deletion;Left=chr3:100520144-100520647+;Right=chr3:100520456-100520729+;Distance=312;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67959885 (chr3:100520144-100520456);Frequency=1.00
chr3	CG	SV	100520144	100520647	14	+	.	ID=3805;Type=deletion;Left=chr3:100520144-100520647;Right=chr3:100520456-100520729
chr3	CG	SV	100520456	100520729	14	+	.	ID=3805;Type=deletion;Left=chr3:100520144-100520647;Right=chr3:100520456-100520729
chr3	CG	SV	101111472	101112731	171	.	.	ID=3804;Type=deletion;Left=chr3:101111472-101111920+;Right=chr3:101112321-101112731+;Distance=849;DiscordantMatePairAlignments=171;LeftRepeat=;RightRepeat=;LeftGenes=NM_001042459:-;NM_032359:+;NM_182909:-;RightGenes=NM_001042459:-;NM_032359:+;NM_182909:-;XRef=rs71970440 (chr3:101111473-101112321);Frequency=0.47
chr3	CG	SV	101111472	101111920	171	+	.	ID=3804;Type=deletion;Left=chr3:101111472-101111920;Right=chr3:101112321-101112731
chr3	CG	SV	101112321	101112731	171	+	.	ID=3804;Type=deletion;Left=chr3:101111472-101111920;Right=chr3:101112321-101112731
chr3	CG	SV	101268053	101268745	17	.	.	ID=3800;Type=deletion;Left=chr3:101268053-101268558+;Right=chr3:101268359-101268745+;Distance=306;DiscordantMatePairAlignments=17;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_001042459:-;NM_032359:+;NM_182909:-;RightGenes=NM_001042459:-;NM_032359:+;NM_182909:-;XRef=rs72164606 (chr3:101268040-101268346);Frequency=0.35
chr3	CG	SV	101268053	101268558	17	+	.	ID=3800;Type=deletion;Left=chr3:101268053-101268558;Right=chr3:101268359-101268745
chr3	CG	SV	101268359	101268745	17	+	.	ID=3800;Type=deletion;Left=chr3:101268053-101268558;Right=chr3:101268359-101268745
chr3	CG	SV	103766477	103767250	17	.	.	ID=3799;Type=deletion;Left=chr3:103766477-103766973+;Right=chr3:103766815-103767250+;Distance=338;DiscordantMatePairAlignments=17;LeftRepeat=Tandem T;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs10524232 (chr3:103766464-103766802);Frequency=0.76
chr3	CG	SV	103766477	103766973	17	+	.	ID=3799;Type=deletion;Left=chr3:103766477-103766973;Right=chr3:103766815-103767250
chr3	CG	SV	103766815	103767250	17	+	.	ID=3799;Type=deletion;Left=chr3:103766477-103766973;Right=chr3:103766815-103767250
chr3	CG	SV	105760890	105762306	30	.	.	ID=3798;Type=deletion;Left=chr3:105760890-105761231+;Right=chr3:105761737-105762306+;Distance=847;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67066218 (chr3:105760889-105761736);Frequency=0.41
chr3	CG	SV	105760890	105761231	30	+	.	ID=3798;Type=deletion;Left=chr3:105760890-105761231;Right=chr3:105761737-105762306
chr3	CG	SV	105761737	105762306	30	+	.	ID=3798;Type=deletion;Left=chr3:105760890-105761231;Right=chr3:105761737-105762306
chr3	CG	SV	106558358	106561092	118	.	.	ID=3797;Type=deletion;Left=chr3:106558358-106558823+;Right=chr3:106560683-106561092+;Distance=2325;DiscordantMatePairAlignments=118;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr3	CG	SV	106558358	106558823	118	+	.	ID=3797;Type=deletion;Left=chr3:106558358-106558823;Right=chr3:106560683-106561092
chr3	CG	SV	106560683	106561092	118	+	.	ID=3797;Type=deletion;Left=chr3:106558358-106558823;Right=chr3:106560683-106561092
chr3	CG	SV	106788694	106793830	12	.	.	ID=3796;Type=deletion;Left=chr3:106788694-106789087+;Right=chr3:106793729-106793830+;Distance=5035;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr3	CG	SV	106788694	106789087	12	+	.	ID=3796;Type=deletion;Left=chr3:106788694-106789087;Right=chr3:106793729-106793830
chr3	CG	SV	106793729	106793830	12	+	.	ID=3796;Type=deletion;Left=chr3:106788694-106789087;Right=chr3:106793729-106793830
chr3	CG	SV	107311575	107314649	18	.	.	ID=3795;Type=deletion;Left=chr3:107311575-107311807+;Right=chr3:107314309-107314649+;Distance=2734;DiscordantMatePairAlignments=18;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr3	CG	SV	107311575	107311807	18	+	.	ID=3795;Type=deletion;Left=chr3:107311575-107311807;Right=chr3:107314309-107314649
chr3	CG	SV	107314309	107314649	18	+	.	ID=3795;Type=deletion;Left=chr3:107311575-107311807;Right=chr3:107314309-107314649
chr3	CG	SV	113950091	113950865	38	.	.	ID=3794;Type=deletion;Left=chr3:113950091-113950548+;Right=chr3:113950421-113950865+;Distance=330;DiscordantMatePairAlignments=38;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10524801 (chr3:113950091-113950421);Frequency=1.00
chr3	CG	SV	113950091	113950548	38	+	.	ID=3794;Type=deletion;Left=chr3:113950091-113950548;Right=chr3:113950421-113950865
chr3	CG	SV	113950421	113950865	38	+	.	ID=3794;Type=deletion;Left=chr3:113950091-113950548;Right=chr3:113950421-113950865
chr3	CG	SV	117687524	117688298	11	.	.	ID=3792;Type=deletion;Left=chr3:117687524-117687857+;Right=chr3:117687868-117688298+;Distance=344;DiscordantMatePairAlignments=11;LeftRepeat=L1PA12:LINE:L1;RightRepeat=L1PA12:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr3	CG	SV	117687524	117687857	11	+	.	ID=3792;Type=deletion;Left=chr3:117687524-117687857;Right=chr3:117687868-117688298
chr3	CG	SV	117687868	117688298	11	+	.	ID=3792;Type=deletion;Left=chr3:117687524-117687857;Right=chr3:117687868-117688298
chr3	CG	SV	121376675	121377663	127	.	.	ID=3790;Type=deletion;Left=chr3:121376675-121377138+;Right=chr3:121377135-121377663+;Distance=460;DiscordantMatePairAlignments=127;LeftRepeat=;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=NM_001168271:-;NM_153002:-;RightGenes=NM_001168271:-;NM_153002:-;XRef=rs67399158 (chr3:121376673-121377133);Frequency=1.00
chr3	CG	SV	121376675	121377138	127	+	.	ID=3790;Type=deletion;Left=chr3:121376675-121377138;Right=chr3:121377135-121377663
chr3	CG	SV	121377135	121377663	127	+	.	ID=3790;Type=deletion;Left=chr3:121376675-121377138;Right=chr3:121377135-121377663
chr3	CG	SV	124680300	124680941	10	.	.	ID=3788;Type=deletion;Left=chr3:124680300-124680787+;Right=chr3:124680652-124680941+;Distance=352;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 32;RightRepeat=Self chain;Tandem period 32;LeftGenes=;RightGenes=;XRef=rs71056127 (chr3:124680372-124680660);Frequency=1.00
chr3	CG	SV	124680300	124680787	10	+	.	ID=3788;Type=deletion;Left=chr3:124680300-124680787;Right=chr3:124680652-124680941
chr3	CG	SV	124680652	124680941	10	+	.	ID=3788;Type=deletion;Left=chr3:124680300-124680787;Right=chr3:124680652-124680941
chr3	CG	SV	124719447	124720194	21	.	.	ID=3787;Type=deletion;Left=chr3:124719447-124719975+;Right=chr3:124719762-124720194+;Distance=315;DiscordantMatePairAlignments=21;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=Charlie8:DNA:MER1_type;LeftGenes=NM_198402:-;RightGenes=NM_198402:-;XRef=rs72266851 (chr3:124719436-124719751);Frequency=1.00
chr3	CG	SV	124719447	124719975	21	+	.	ID=3787;Type=deletion;Left=chr3:124719447-124719975;Right=chr3:124719762-124720194
chr3	CG	SV	124719762	124720194	21	+	.	ID=3787;Type=deletion;Left=chr3:124719447-124719975;Right=chr3:124719762-124720194
chr3	CG	SV	126372743	126374030	23	.	.	ID=3786;Type=deletion;Left=chr3:126372743-126372924+;Right=chr3:126373513-126374030+;Distance=770;DiscordantMatePairAlignments=23;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_024628:-;RightGenes=NM_024628:-;XRef=rs66464009 (chr3:126372743-126373513);Frequency=1.00
chr3	CG	SV	126372743	126372924	23	+	.	ID=3786;Type=deletion;Left=chr3:126372743-126372924;Right=chr3:126373513-126374030
chr3	CG	SV	126373513	126374030	23	+	.	ID=3786;Type=deletion;Left=chr3:126372743-126372924;Right=chr3:126373513-126374030
chr3	CG	SV	126418990	126420230	36	.	.	ID=3785;Type=deletion;Left=chr3:126418990-126419221+;Right=chr3:126419859-126420230+;Distance=869;DiscordantMatePairAlignments=36;LeftRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72308239 (chr3:126418985-126419853);Frequency=0.82
chr3	CG	SV	126418990	126419221	36	+	.	ID=3785;Type=deletion;Left=chr3:126418990-126419221;Right=chr3:126419859-126420230
chr3	CG	SV	126419859	126420230	36	+	.	ID=3785;Type=deletion;Left=chr3:126418990-126419221;Right=chr3:126419859-126420230
chr3	CG	SV	127841628	127842392	26	.	.	ID=3784;Type=deletion;Left=chr3:127841628-127841976+;Right=chr3:127841955-127842392+;Distance=327;DiscordantMatePairAlignments=26;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs35645119 (chr3:127841628-127841955);Frequency=1.00
chr3	CG	SV	127841628	127841976	26	+	.	ID=3784;Type=deletion;Left=chr3:127841628-127841976;Right=chr3:127841955-127842392
chr3	CG	SV	127841955	127842392	26	+	.	ID=3784;Type=deletion;Left=chr3:127841628-127841976;Right=chr3:127841955-127842392
chr3	CG	SV	131830267	131836264	86	.	.	ID=3782;Type=deletion;Left=chr3:131830267-131830685+;Right=chr3:131835809-131836264+;Distance=5542;DiscordantMatePairAlignments=86;LeftRepeat=;RightRepeat=;LeftGenes=NM_001102608:+;RightGenes=NM_001102608:+;XRef=rs72337912 (chr3:131830267-131835809);Frequency=0.35
chr3	CG	SV	131830267	131830685	86	+	.	ID=3782;Type=deletion;Left=chr3:131830267-131830685;Right=chr3:131835809-131836264
chr3	CG	SV	131835809	131836264	86	+	.	ID=3782;Type=deletion;Left=chr3:131830267-131830685;Right=chr3:131835809-131836264
chr3	CG	SV	133190943	133196434	76	.	.	ID=3780;Type=deletion;Left=chr3:133190943-133191343+;Right=chr3:133196074-133196434+;Distance=5131;DiscordantMatePairAlignments=76;LeftRepeat=;RightRepeat=;LeftGenes=NM_130808:-;RightGenes=NM_130808:-;XRef=;Frequency=0.59
chr3	CG	SV	133190943	133191343	76	+	.	ID=3780;Type=deletion;Left=chr3:133190943-133191343;Right=chr3:133196074-133196434
chr3	CG	SV	133196074	133196434	76	+	.	ID=3780;Type=deletion;Left=chr3:133190943-133191343;Right=chr3:133196074-133196434
chr3	CG	SV	134986464	134988328	108	.	.	ID=3778;Type=deletion;Left=chr3:134986464-134986902+;Right=chr3:134987780-134988328+;Distance=1316;DiscordantMatePairAlignments=108;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71056134 (chr3:134986472-134987788);Frequency=0.53
chr3	CG	SV	134986464	134986902	108	+	.	ID=3778;Type=deletion;Left=chr3:134986464-134986902;Right=chr3:134987780-134988328
chr3	CG	SV	134987780	134988328	108	+	.	ID=3778;Type=deletion;Left=chr3:134986464-134986902;Right=chr3:134987780-134988328
chr3	CG	SV	136156599	136157694	83	.	.	ID=3777;Type=deletion;Left=chr3:136156599-136157112+;Right=chr3:136157252-136157694+;Distance=653;DiscordantMatePairAlignments=83;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=NM_004441:+;RightGenes=NM_004441:+;XRef=rs68037545 (chr3:136156592-136157245);Frequency=0.82
chr3	CG	SV	136156599	136157112	83	+	.	ID=3777;Type=deletion;Left=chr3:136156599-136157112;Right=chr3:136157252-136157694
chr3	CG	SV	136157252	136157694	83	+	.	ID=3777;Type=deletion;Left=chr3:136156599-136157112;Right=chr3:136157252-136157694
chr3	CG	SV	141153403	141157545	15	.	.	ID=3775;Type=deletion;Left=chr3:141153403-141153508+;Right=chr3:141157144-141157545+;Distance=3741;DiscordantMatePairAlignments=15;LeftRepeat=;RightRepeat=;LeftGenes=NM_022131:+;RightGenes=NM_022131:+;XRef=;Frequency=1.00
chr3	CG	SV	141153403	141153508	15	+	.	ID=3775;Type=deletion;Left=chr3:141153403-141153508;Right=chr3:141157144-141157545
chr3	CG	SV	141157144	141157545	15	+	.	ID=3775;Type=deletion;Left=chr3:141153403-141153508;Right=chr3:141157144-141157545
chr3	CG	SV	142103520	142105048	52	.	.	ID=1431;Type=distal-duplication;Left=chr3:142103520-142103797-;Right=chr3:142104719-142105048-;Distance=1251;DiscordantMatePairAlignments=52;LeftRepeat=Self chain;RightRepeat=Tigger3b:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr3	CG	SV	142103520	142103797	52	-	.	ID=1431;Type=distal-duplication;Left=chr3:142103520-142103797;Right=chr3:142104719-142105048
chr3	CG	SV	142104719	142105048	52	-	.	ID=1431;Type=distal-duplication;Left=chr3:142103520-142103797;Right=chr3:142104719-142105048
chr3	CG	SV	142104072	142105413	21	.	.	ID=3774;Type=distal-duplication;Left=chr3:142104072-142104295+;Right=chr3:142105049-142105413+;Distance=977;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;RightRepeat=Tigger3b:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr3	CG	SV	142104072	142104295	21	+	.	ID=3774;Type=distal-duplication;Left=chr3:142104072-142104295;Right=chr3:142105049-142105413
chr3	CG	SV	142105049	142105413	21	+	.	ID=3774;Type=distal-duplication;Left=chr3:142104072-142104295;Right=chr3:142105049-142105413
chr3	CG	SV	147867880	147877861	71	.	.	ID=3773;Type=complex;Left=chr3:147867880-147868289+;Right=chr3:147877553-147877861+;Distance=9673;DiscordantMatePairAlignments=71;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs72156653 (chr3:147867880-147877553);Frequency=0.94
chr3	CG	SV	147867880	147868289	71	+	.	ID=3773;Type=complex;Left=chr3:147867880-147868289;Right=chr3:147877553-147877861
chr3	CG	SV	147877553	147877861	71	+	.	ID=3773;Type=complex;Left=chr3:147867880-147868289;Right=chr3:147877553-147877861
chr3	CG	SV	147872655	147877855	59	.	.	ID=1430;Type=complex;Left=chr3:147872655-147873094-;Right=chr3:147877553-147877855-;Distance=4761;DiscordantMatePairAlignments=59;LeftRepeat=L1PA16:LINE:L1;RightRepeat=THE1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	147872655	147873094	59	-	.	ID=1430;Type=complex;Left=chr3:147872655-147873094;Right=chr3:147877553-147877855
chr3	CG	SV	147877553	147877855	59	-	.	ID=1430;Type=complex;Left=chr3:147872655-147873094;Right=chr3:147877553-147877855
chr3	CG	SV	149764130	149768529	23	.	.	ID=3771;Type=deletion;Left=chr3:149764130-149764453+;Right=chr3:149768115-149768529+;Distance=3985;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71056143 (chr3:149764130-149768115);Frequency=0.71
chr3	CG	SV	149764130	149764453	23	+	.	ID=3771;Type=deletion;Left=chr3:149764130-149764453;Right=chr3:149768115-149768529
chr3	CG	SV	149768115	149768529	23	+	.	ID=3771;Type=deletion;Left=chr3:149764130-149764453;Right=chr3:149768115-149768529
chr3	CG	SV	150049492	150050261	22	.	.	ID=3770;Type=deletion;Left=chr3:150049492-150049876+;Right=chr3:150049810-150050261+;Distance=318;DiscordantMatePairAlignments=22;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001871:+;RightGenes=NM_001871:+;XRef=rs10705315 (chr3:150049492-150049810);Frequency=1.00
chr3	CG	SV	150049492	150049876	22	+	.	ID=3770;Type=deletion;Left=chr3:150049492-150049876;Right=chr3:150049810-150050261
chr3	CG	SV	150049810	150050261	22	+	.	ID=3770;Type=deletion;Left=chr3:150049492-150049876;Right=chr3:150049810-150050261
chr3	CG	SV	150446060	150452825	72	.	.	ID=3767;Type=deletion;Left=chr3:150446060-150446497+;Right=chr3:150452398-150452825+;Distance=6338;DiscordantMatePairAlignments=72;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr3	CG	SV	150446060	150446497	72	+	.	ID=3767;Type=deletion;Left=chr3:150446060-150446497;Right=chr3:150452398-150452825
chr3	CG	SV	150452398	150452825	72	+	.	ID=3767;Type=deletion;Left=chr3:150446060-150446497;Right=chr3:150452398-150452825
chr3	CG	SV	150751166	150753339	109	.	.	ID=3766;Type=deletion;Left=chr3:150751166-150751554+;Right=chr3:150752841-150753339+;Distance=1675;DiscordantMatePairAlignments=109;LeftRepeat=;RightRepeat=;LeftGenes=NM_001168278:-;NM_001168280:-;NM_015472:-;RightGenes=NM_001168278:-;NM_001168280:-;NM_015472:-;XRef=rs67511215 (chr3:150751166-150752841);Frequency=0.35
chr3	CG	SV	150751166	150751554	109	+	.	ID=3766;Type=deletion;Left=chr3:150751166-150751554;Right=chr3:150752841-150753339
chr3	CG	SV	150752841	150753339	109	+	.	ID=3766;Type=deletion;Left=chr3:150751166-150751554;Right=chr3:150752841-150753339
chr3	CG	SV	153794416	153796286	119	.	.	ID=3765;Type=deletion;Left=chr3:153794416-153794860+;Right=chr3:153795848-153796286+;Distance=1432;DiscordantMatePairAlignments=119;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67110903 (chr3:153794413-153795845);Frequency=1.00
chr3	CG	SV	153794416	153794860	119	+	.	ID=3765;Type=deletion;Left=chr3:153794416-153794860;Right=chr3:153795848-153796286
chr3	CG	SV	153795848	153796286	119	+	.	ID=3765;Type=deletion;Left=chr3:153794416-153794860;Right=chr3:153795848-153796286
chr3	CG	SV	159833434	159835029	17	.	.	ID=3763;Type=deletion;Left=chr3:159833434-159833802+;Right=chr3:159834606-159835029+;Distance=1172;DiscordantMatePairAlignments=17;LeftRepeat=Charlie3:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71056148 (chr3:159833434-159834606);Frequency=0.53
chr3	CG	SV	159833434	159833802	17	+	.	ID=3763;Type=deletion;Left=chr3:159833434-159833802;Right=chr3:159834606-159835029
chr3	CG	SV	159834606	159835029	17	+	.	ID=3763;Type=deletion;Left=chr3:159833434-159833802;Right=chr3:159834606-159835029
chr3	CG	SV	160278493	160279145	14	.	.	ID=567;Type=probable-inversion;Left=chr3:160278493-160278568-;Right=chr3:160278610-160279145+;Distance=42;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=;LeftGenes=NM_001042705:+;NM_001042706:+;RightGenes=NM_001042705:+;NM_001042706:+;XRef=;Frequency=0.35
chr3	CG	SV	160278493	160278568	14	-	.	ID=567;Type=probable-inversion;Left=chr3:160278493-160278568;Right=chr3:160278610-160279145
chr3	CG	SV	160278610	160279145	14	-	.	ID=567;Type=probable-inversion;Left=chr3:160278493-160278568;Right=chr3:160278610-160279145
chr3	CG	SV	162729422	162730174	23	.	.	ID=3761;Type=deletion;Left=chr3:162729422-162729921+;Right=chr3:162729757-162730174+;Distance=335;DiscordantMatePairAlignments=23;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72289031 (chr3:162729422-162729757);Frequency=0.65
chr3	CG	SV	162729422	162729921	23	+	.	ID=3761;Type=deletion;Left=chr3:162729422-162729921;Right=chr3:162729757-162730174
chr3	CG	SV	162729757	162730174	23	+	.	ID=3761;Type=deletion;Left=chr3:162729422-162729921;Right=chr3:162729757-162730174
chr3	CG	SV	164008435	164030336	146	.	.	ID=4839;Type=complex;Left=chr3:164008435-164008836+;Right=chr3:164029889-164030336-;Distance=21901;DiscordantMatePairAlignments=146;LeftRepeat=MIR:SINE:MIR;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr3	CG	SV	164008435	164008836	146	+	.	ID=4839;Type=complex;Left=chr3:164008435-164008836;Right=chr3:164029889-164030336
chr3	CG	SV	164029889	164030336	146	+	.	ID=4839;Type=complex;Left=chr3:164008435-164008836;Right=chr3:164029889-164030336
chr3	CG	SV	164027572	164030725	68	.	.	ID=566;Type=complex;Left=chr3:164027572-164028056-;Right=chr3:164030352-164030725+;Distance=2296;DiscordantMatePairAlignments=68;LeftRepeat=THE1C:LTR:MaLR;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr3	CG	SV	164027572	164028056	68	-	.	ID=566;Type=complex;Left=chr3:164027572-164028056;Right=chr3:164030352-164030725
chr3	CG	SV	164030352	164030725	68	-	.	ID=566;Type=complex;Left=chr3:164027572-164028056;Right=chr3:164030352-164030725
chr3	CG	SV	164247596	164252285	81	.	.	ID=3759;Type=deletion;Left=chr3:164247596-164248003+;Right=chr3:164251779-164252285+;Distance=4183;DiscordantMatePairAlignments=81;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Tandem TG;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67657160 (chr3:164247595-164251776);Frequency=0.88
chr3	CG	SV	164247596	164248003	81	+	.	ID=3759;Type=deletion;Left=chr3:164247596-164248003;Right=chr3:164251779-164252285
chr3	CG	SV	164251779	164252285	81	+	.	ID=3759;Type=deletion;Left=chr3:164247596-164248003;Right=chr3:164251779-164252285
chr3	CG	SV	173883606	173884350	22	.	.	ID=3757;Type=deletion;Left=chr3:173883606-173883958+;Right=chr3:173883927-173884350+;Distance=321;DiscordantMatePairAlignments=22;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=NM_001146276:-;NM_001146277:-;NM_001146278:-;NM_020792:-;RightGenes=NM_001146276:-;NM_001146277:-;NM_001146278:-;NM_020792:-;XRef=rs67050178 (chr3:173883606-173883927);Frequency=0.88
chr3	CG	SV	173883606	173883958	22	+	.	ID=3757;Type=deletion;Left=chr3:173883606-173883958;Right=chr3:173883927-173884350
chr3	CG	SV	173883927	173884350	22	+	.	ID=3757;Type=deletion;Left=chr3:173883606-173883958;Right=chr3:173883927-173884350
chr3	CG	SV	178845741	178846482	10	.	.	ID=3755;Type=deletion;Left=chr3:178845741-178845951+;Right=chr3:178846203-178846482+;Distance=462;DiscordantMatePairAlignments=10;LeftRepeat=(CA)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 113;RightRepeat=(CA)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 95;LeftGenes=;RightGenes=;XRef=rs71634258 (chr3:178845723-178846030);Frequency=0.82
chr3	CG	SV	178845741	178845951	10	+	.	ID=3755;Type=deletion;Left=chr3:178845741-178845951;Right=chr3:178846203-178846482
chr3	CG	SV	178846203	178846482	10	+	.	ID=3755;Type=deletion;Left=chr3:178845741-178845951;Right=chr3:178846203-178846482
chr3	CG	SV	181137035	181137940	80	.	.	ID=3754;Type=deletion;Left=chr3:181137035-181137504+;Right=chr3:181137500-181137940+;Distance=465;DiscordantMatePairAlignments=80;LeftRepeat=;RightRepeat=;LeftGenes=NM_016559:-;RightGenes=NM_016559:-;XRef=rs66526785 (chr3:181137035-181137500);Frequency=0.94
chr3	CG	SV	181137035	181137504	80	+	.	ID=3754;Type=deletion;Left=chr3:181137035-181137504;Right=chr3:181137500-181137940
chr3	CG	SV	181137500	181137940	80	+	.	ID=3754;Type=deletion;Left=chr3:181137035-181137504;Right=chr3:181137500-181137940
chr3	CG	SV	185359537	185360367	18	.	.	ID=3753;Type=deletion;Left=chr3:185359537-185360016+;Right=chr3:185360125-185360367+;Distance=588;DiscordantMatePairAlignments=18;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_004423:+;RightGenes=NM_004423:+;XRef=;Frequency=0.76
chr3	CG	SV	185359537	185360016	18	+	.	ID=3753;Type=deletion;Left=chr3:185359537-185360016;Right=chr3:185360125-185360367
chr3	CG	SV	185360125	185360367	18	+	.	ID=3753;Type=deletion;Left=chr3:185359537-185360016;Right=chr3:185360125-185360367
chr3	CG	SV	186500039	186500650	16	.	.	ID=3752;Type=deletion;Left=chr3:186500039-186500615+;Right=chr3:186500363-186500650+;Distance=324;DiscordantMatePairAlignments=16;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=L1MB1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	186500039	186500615	16	+	.	ID=3752;Type=deletion;Left=chr3:186500039-186500615;Right=chr3:186500363-186500650
chr3	CG	SV	186500363	186500650	16	+	.	ID=3752;Type=deletion;Left=chr3:186500039-186500615;Right=chr3:186500363-186500650
chr3	CG	SV	188063727	188068470	121	.	.	ID=3751;Type=deletion;Left=chr3:188063727-188064096+;Right=chr3:188067996-188068470+;Distance=4269;DiscordantMatePairAlignments=121;LeftRepeat=Tandem TCCCTC;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67678013 (chr3:188063727-188067996);Frequency=1.00
chr3	CG	SV	188063727	188064096	121	+	.	ID=3751;Type=deletion;Left=chr3:188063727-188064096;Right=chr3:188067996-188068470
chr3	CG	SV	188067996	188068470	121	+	.	ID=3751;Type=deletion;Left=chr3:188063727-188064096;Right=chr3:188067996-188068470
chr3	CG	SV	189787538	189788024	13	.	.	ID=3749;Type=deletion;Left=chr3:189787538-189788001+;Right=chr3:189787871-189788024+;Distance=333;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=;LeftGenes=NM_001167671:+;NM_001167672:+;NM_005578:+;RightGenes=NM_001167671:+;NM_001167672:+;NM_005578:+;XRef=;Frequency=1.00
chr3	CG	SV	189787538	189788001	13	+	.	ID=3749;Type=deletion;Left=chr3:189787538-189788001;Right=chr3:189787871-189788024
chr3	CG	SV	189787871	189788024	13	+	.	ID=3749;Type=deletion;Left=chr3:189787538-189788001;Right=chr3:189787871-189788024
chr3	CG	SV	191220042	191223325	28	.	.	ID=3748;Type=deletion;Left=chr3:191220042-191220425+;Right=chr3:191223222-191223325+;Distance=3180;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=MER5A:DNA:MER1_type;LeftGenes=NM_001134418:-;NM_018192:-;RightGenes=NM_001134418:-;NM_018192:-;XRef=rs66785223 (chr3:191220042-191223222);Frequency=0.65
chr3	CG	SV	191220042	191220425	28	+	.	ID=3748;Type=deletion;Left=chr3:191220042-191220425;Right=chr3:191223222-191223325
chr3	CG	SV	191223222	191223325	28	+	.	ID=3748;Type=deletion;Left=chr3:191220042-191220425;Right=chr3:191223222-191223325
chr3	CG	SV	191773344	191774114	13	.	.	ID=3747;Type=deletion;Left=chr3:191773344-191773736+;Right=chr3:191773641-191774114+;Distance=297;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001167928:+;NM_001167929:+;NM_001167930:+;NM_001167931:+;NM_002182:+;NM_134470:+;RightGenes=NM_001167928:+;NM_001167929:+;NM_001167930:+;NM_001167931:+;NM_002182:+;NM_134470:+;XRef=rs34386836 (chr3:191773344-191773641);Frequency=0.76
chr3	CG	SV	191773344	191773736	13	+	.	ID=3747;Type=deletion;Left=chr3:191773344-191773736;Right=chr3:191773641-191774114
chr3	CG	SV	191773641	191774114	13	+	.	ID=3747;Type=deletion;Left=chr3:191773344-191773736;Right=chr3:191773641-191774114
chr3	CG	SV	193338792	193339523	37	.	.	ID=3745;Type=deletion;Left=chr3:193338792-193339258+;Right=chr3:193339130-193339523+;Distance=338;DiscordantMatePairAlignments=37;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10530679 (chr3:193338779-193339117);Frequency=1.00
chr3	CG	SV	193338792	193339258	37	+	.	ID=3745;Type=deletion;Left=chr3:193338792-193339258;Right=chr3:193339130-193339523
chr3	CG	SV	193339130	193339523	37	+	.	ID=3745;Type=deletion;Left=chr3:193338792-193339258;Right=chr3:193339130-193339523
chr3	CG	SV	194227049	194228040	96	.	.	ID=3743;Type=deletion;Left=chr3:194227049-194227316+;Right=chr3:194227589-194228040+;Distance=540;DiscordantMatePairAlignments=96;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66924869 (chr3:194227047-194227587);Frequency=0.59
chr3	CG	SV	194227049	194227316	96	+	.	ID=3743;Type=deletion;Left=chr3:194227049-194227316;Right=chr3:194227589-194228040
chr3	CG	SV	194227589	194228040	96	+	.	ID=3743;Type=deletion;Left=chr3:194227049-194227316;Right=chr3:194227589-194228040
chr3	CG	SV	194358026	194368525	89	.	.	ID=3742;Type=deletion;Left=chr3:194358026-194358456+;Right=chr3:194368102-194368525+;Distance=10076;DiscordantMatePairAlignments=89;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	194358026	194358456	89	+	.	ID=3742;Type=deletion;Left=chr3:194358026-194358456;Right=chr3:194368102-194368525
chr3	CG	SV	194368102	194368525	89	+	.	ID=3742;Type=deletion;Left=chr3:194358026-194358456;Right=chr3:194368102-194368525
chr3	CG	SV	195865483	195866138	27	.	.	ID=3741;Type=deletion;Left=chr3:195865483-195865951+;Right=chr3:195865847-195866138+;Distance=364;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;Tandem period 28;RightRepeat=Self chain;LeftGenes=NM_018385:-;RightGenes=NM_018385:-;XRef=rs71056173 (chr3:195865416-195865808);Frequency=0.94
chr3	CG	SV	195865483	195865951	27	+	.	ID=3741;Type=deletion;Left=chr3:195865483-195865951;Right=chr3:195865847-195866138
chr3	CG	SV	195865847	195866138	27	+	.	ID=3741;Type=deletion;Left=chr3:195865483-195865951;Right=chr3:195865847-195866138
chr3	CG	SV	196024580	196027724	146	.	.	ID=3740;Type=distal-duplication;Left=chr3:196024580-196025076+;Right=chr3:196027546-196027724+;Distance=2966;DiscordantMatePairAlignments=146;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72236752 (chr3:196024579-196027545);Frequency=0.76
chr3	CG	SV	196024580	196025076	146	+	.	ID=3740;Type=distal-duplication;Left=chr3:196024580-196025076;Right=chr3:196027546-196027724
chr3	CG	SV	196027546	196027724	146	+	.	ID=3740;Type=distal-duplication;Left=chr3:196024580-196025076;Right=chr3:196027546-196027724
chr3	CG	SV	196024118	196027718	229	.	.	ID=1429;Type=distal-duplication;Left=chr3:196024118-196024598-;Right=chr3:196027542-196027718-;Distance=3120;DiscordantMatePairAlignments=229;LeftRepeat=;RightRepeat=Tandem period 120;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr3	CG	SV	196024118	196024598	229	-	.	ID=1429;Type=distal-duplication;Left=chr3:196024118-196024598;Right=chr3:196027542-196027718
chr3	CG	SV	196027542	196027718	229	-	.	ID=1429;Type=distal-duplication;Left=chr3:196024118-196024598;Right=chr3:196027542-196027718
chr3	CG	SV	197138791	197140061	12	.	.	ID=3738;Type=deletion;Left=chr3:197138791-197139233+;Right=chr3:197139764-197140061+;Distance=973;DiscordantMatePairAlignments=12;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr3	CG	SV	197138791	197139233	12	+	.	ID=3738;Type=deletion;Left=chr3:197138791-197139233;Right=chr3:197139764-197140061
chr3	CG	SV	197139764	197140061	12	+	.	ID=3738;Type=deletion;Left=chr3:197138791-197139233;Right=chr3:197139764-197140061
chr4	CG	SV	3582078	3582682	41	.	.	ID=3735;Type=deletion;Left=chr4:3582078-3582559+;Right=chr4:3582451-3582682+;Distance=373;DiscordantMatePairAlignments=41;LeftRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Self chain;Tandem CATC;Tandem period 19;Tandem period 27;Tandem period 35;Tandem period 53;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Self chain;Tandem CATC;Tandem period 19;Tandem period 27;Tandem period 35;Tandem period 53;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	3582078	3582559	41	+	.	ID=3735;Type=deletion;Left=chr4:3582078-3582559;Right=chr4:3582451-3582682
chr4	CG	SV	3582451	3582682	41	+	.	ID=3735;Type=deletion;Left=chr4:3582078-3582559;Right=chr4:3582451-3582682
chr4	CG	SV	3583173	3588631	94	.	.	ID=3734;Type=deletion;Left=chr4:3583173-3583693+;Right=chr4:3588418-3588631+;Distance=5245;DiscordantMatePairAlignments=94;LeftRepeat=Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	3583173	3583693	94	+	.	ID=3734;Type=deletion;Left=chr4:3583173-3583693;Right=chr4:3588418-3588631
chr4	CG	SV	3588418	3588631	94	+	.	ID=3734;Type=deletion;Left=chr4:3583173-3583693;Right=chr4:3588418-3588631
chr4	CG	SV	5885791	5886395	18	.	.	ID=3733;Type=deletion;Left=chr4:5885791-5886260+;Right=chr4:5886104-5886395+;Distance=313;DiscordantMatePairAlignments=18;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=MLT1C:LTR:MaLR;Self chain;LeftGenes=NM_001014809:-;NM_001313:-;RightGenes=NM_001014809:-;NM_001313:-;XRef=;Frequency=0.18
chr4	CG	SV	5885791	5886260	18	+	.	ID=3733;Type=deletion;Left=chr4:5885791-5886260;Right=chr4:5886104-5886395
chr4	CG	SV	5886104	5886395	18	+	.	ID=3733;Type=deletion;Left=chr4:5885791-5886260;Right=chr4:5886104-5886395
chr4	CG	SV	10001528	10011765	92	.	.	ID=3730;Type=deletion;Left=chr4:10001528-10001954+;Right=chr4:10011279-10011765+;Distance=9751;DiscordantMatePairAlignments=92;LeftRepeat=L1MA3:LINE:L1;RightRepeat=L1MEe:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr4	CG	SV	10001528	10001954	92	+	.	ID=3730;Type=deletion;Left=chr4:10001528-10001954;Right=chr4:10011279-10011765
chr4	CG	SV	10011279	10011765	92	+	.	ID=3730;Type=deletion;Left=chr4:10001528-10001954;Right=chr4:10011279-10011765
chr4	CG	SV	16811863	16812600	15	.	.	ID=3729;Type=deletion;Left=chr4:16811863-16812247+;Right=chr4:16812173-16812600+;Distance=310;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6148322 (chr4:16811863-16812173);Frequency=1.00
chr4	CG	SV	16811863	16812247	15	+	.	ID=3729;Type=deletion;Left=chr4:16811863-16812247;Right=chr4:16812173-16812600
chr4	CG	SV	16812173	16812600	15	+	.	ID=3729;Type=deletion;Left=chr4:16811863-16812247;Right=chr4:16812173-16812600
chr4	CG	SV	18688556	18695078	115	.	.	ID=3728;Type=deletion;Left=chr4:18688556-18689000+;Right=chr4:18694656-18695078+;Distance=6100;DiscordantMatePairAlignments=115;LeftRepeat=L1ME1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67516407 (chr4:18688548-18694648);Frequency=0.71
chr4	CG	SV	18688556	18689000	115	+	.	ID=3728;Type=deletion;Left=chr4:18688556-18689000;Right=chr4:18694656-18695078
chr4	CG	SV	18694656	18695078	115	+	.	ID=3728;Type=deletion;Left=chr4:18688556-18689000;Right=chr4:18694656-18695078
chr4	CG	SV	28030689	28031375	21	.	.	ID=3724;Type=deletion;Left=chr4:28030689-28031192+;Right=chr4:28031039-28031375+;Distance=350;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10705246 (chr4:28030688-28031038);Frequency=0.94
chr4	CG	SV	28030689	28031192	21	+	.	ID=3724;Type=deletion;Left=chr4:28030689-28031192;Right=chr4:28031039-28031375
chr4	CG	SV	28031039	28031375	21	+	.	ID=3724;Type=deletion;Left=chr4:28030689-28031192;Right=chr4:28031039-28031375
chr4	CG	SV	29270220	29270962	11	.	.	ID=3723;Type=deletion;Left=chr4:29270220-29270631+;Right=chr4:29270548-29270962+;Distance=328;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs34494660 (chr4:29270220-29270548);Frequency=1.00
chr4	CG	SV	29270220	29270631	11	+	.	ID=3723;Type=deletion;Left=chr4:29270220-29270631;Right=chr4:29270548-29270962
chr4	CG	SV	29270548	29270962	11	+	.	ID=3723;Type=deletion;Left=chr4:29270220-29270631;Right=chr4:29270548-29270962
chr4	CG	SV	31101965	31102672	12	.	.	ID=3719;Type=deletion;Left=chr4:31101965-31102384+;Right=chr4:31102401-31102672+;Distance=436;DiscordantMatePairAlignments=12;LeftRepeat=L1P1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71727611 (chr4:31101965-31102401);Frequency=1.00
chr4	CG	SV	31101965	31102384	12	+	.	ID=3719;Type=deletion;Left=chr4:31101965-31102384;Right=chr4:31102401-31102672
chr4	CG	SV	31102401	31102672	12	+	.	ID=3719;Type=deletion;Left=chr4:31101965-31102384;Right=chr4:31102401-31102672
chr4	CG	SV	33523568	33525046	52	.	.	ID=3718;Type=deletion;Left=chr4:33523568-33523868+;Right=chr4:33524625-33525046+;Distance=1057;DiscordantMatePairAlignments=52;LeftRepeat=MER11C:LTR:ERVK;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66649474 (chr4:33523565-33524622);Frequency=1.00
chr4	CG	SV	33523568	33523868	52	+	.	ID=3718;Type=deletion;Left=chr4:33523568-33523868;Right=chr4:33524625-33525046
chr4	CG	SV	33524625	33525046	52	+	.	ID=3718;Type=deletion;Left=chr4:33523568-33523868;Right=chr4:33524625-33525046
chr4	CG	SV	39701448	39702956	11	.	.	ID=3717;Type=deletion;Left=chr4:39701448-39701681+;Right=chr4:39702814-39702956+;Distance=1366;DiscordantMatePairAlignments=11;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=AluSq:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs67318308 (chr4:39701310-39702676);Frequency=0.94
chr4	CG	SV	39701448	39701681	11	+	.	ID=3717;Type=deletion;Left=chr4:39701448-39701681;Right=chr4:39702814-39702956
chr4	CG	SV	39702814	39702956	11	+	.	ID=3717;Type=deletion;Left=chr4:39701448-39701681;Right=chr4:39702814-39702956
chr4	CG	SV	43446562	43447323	11	.	.	ID=3715;Type=deletion;Left=chr4:43446562-43446933+;Right=chr4:43446886-43447323+;Distance=324;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71848921 (chr4:43446562-43446872);Frequency=0.65
chr4	CG	SV	43446562	43446933	11	+	.	ID=3715;Type=deletion;Left=chr4:43446562-43446933;Right=chr4:43446886-43447323
chr4	CG	SV	43446886	43447323	11	+	.	ID=3715;Type=deletion;Left=chr4:43446562-43446933;Right=chr4:43446886-43447323
chr4	CG	SV	43626253	43627002	14	.	.	ID=3714;Type=deletion;Left=chr4:43626253-43626661+;Right=chr4:43626594-43627002+;Distance=341;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs6148417 (chr4:43626253-43626594);Frequency=1.00
chr4	CG	SV	43626253	43626661	14	+	.	ID=3714;Type=deletion;Left=chr4:43626253-43626661;Right=chr4:43626594-43627002
chr4	CG	SV	43626594	43627002	14	+	.	ID=3714;Type=deletion;Left=chr4:43626253-43626661;Right=chr4:43626594-43627002
chr4	CG	SV	44202036	44202909	45	.	.	ID=3713;Type=deletion;Left=chr4:44202036-44202501+;Right=chr4:44202490-44202909+;Distance=454;DiscordantMatePairAlignments=45;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66878865 (chr4:44202032-44202486);Frequency=1.00
chr4	CG	SV	44202036	44202501	45	+	.	ID=3713;Type=deletion;Left=chr4:44202036-44202501;Right=chr4:44202490-44202909
chr4	CG	SV	44202490	44202909	45	+	.	ID=3713;Type=deletion;Left=chr4:44202036-44202501;Right=chr4:44202490-44202909
chr4	CG	SV	44204151	44204818	11	.	.	ID=3712;Type=deletion;Left=chr4:44204151-44204613+;Right=chr4:44204469-44204818+;Distance=318;DiscordantMatePairAlignments=11;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10525439 (chr4:44204134-44204452);Frequency=1.00
chr4	CG	SV	44204151	44204613	11	+	.	ID=3712;Type=deletion;Left=chr4:44204151-44204613;Right=chr4:44204469-44204818
chr4	CG	SV	44204469	44204818	11	+	.	ID=3712;Type=deletion;Left=chr4:44204151-44204613;Right=chr4:44204469-44204818
chr4	CG	SV	45897554	45900260	30	.	.	ID=3711;Type=deletion;Left=chr4:45897554-45897968+;Right=chr4:45899785-45900260+;Distance=2231;DiscordantMatePairAlignments=30;LeftRepeat=MIR:SINE:MIR;RightRepeat=L1MEc:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72385984 (chr4:45897552-45899783);Frequency=0.53
chr4	CG	SV	45897554	45897968	30	+	.	ID=3711;Type=deletion;Left=chr4:45897554-45897968;Right=chr4:45899785-45900260
chr4	CG	SV	45899785	45900260	30	+	.	ID=3711;Type=deletion;Left=chr4:45897554-45897968;Right=chr4:45899785-45900260
chr4	CG	SV	57782099	57782952	57	.	.	ID=3710;Type=deletion;Left=chr4:57782099-57782549+;Right=chr4:57782497-57782952+;Distance=398;DiscordantMatePairAlignments=57;LeftRepeat=MIRb:SINE:MIR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10705509 (chr4:57782102-57782500);Frequency=1.00
chr4	CG	SV	57782099	57782549	57	+	.	ID=3710;Type=deletion;Left=chr4:57782099-57782549;Right=chr4:57782497-57782952
chr4	CG	SV	57782497	57782952	57	+	.	ID=3710;Type=deletion;Left=chr4:57782099-57782549;Right=chr4:57782497-57782952
chr4	CG	SV	57842787	57843881	31	.	.	ID=3708;Type=deletion;Left=chr4:57842787-57843201+;Right=chr4:57843113-57843881+;Distance=326;DiscordantMatePairAlignments=31;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71180070 (chr4:57842787-57843113);Frequency=0.82
chr4	CG	SV	57842787	57843201	31	+	.	ID=3708;Type=deletion;Left=chr4:57842787-57843201;Right=chr4:57843113-57843881
chr4	CG	SV	57843113	57843881	31	+	.	ID=3708;Type=deletion;Left=chr4:57842787-57843201;Right=chr4:57843113-57843881
chr4	CG	SV	59627160	59633627	95	.	.	ID=3707;Type=deletion;Left=chr4:59627160-59627634+;Right=chr4:59633202-59633627+;Distance=6042;DiscordantMatePairAlignments=95;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72460317 (chr4:59627160-59633202);Frequency=0.94
chr4	CG	SV	59627160	59627634	95	+	.	ID=3707;Type=deletion;Left=chr4:59627160-59627634;Right=chr4:59633202-59633627
chr4	CG	SV	59633202	59633627	95	+	.	ID=3707;Type=deletion;Left=chr4:59627160-59627634;Right=chr4:59633202-59633627
chr4	CG	SV	61012701	61016100	10	.	.	ID=3706;Type=deletion;Left=chr4:61012701-61012954+;Right=chr4:61015781-61016100+;Distance=3080;DiscordantMatePairAlignments=10;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1PA4:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66908185 (chr4:61012701-61015780);Frequency=0.76
chr4	CG	SV	61012701	61012954	10	+	.	ID=3706;Type=deletion;Left=chr4:61012701-61012954;Right=chr4:61015781-61016100
chr4	CG	SV	61015781	61016100	10	+	.	ID=3706;Type=deletion;Left=chr4:61012701-61012954;Right=chr4:61015781-61016100
chr4	CG	SV	69994437	69995128	11	.	.	ID=3701;Type=deletion;Left=chr4:69994437-69994876+;Right=chr4:69994761-69995128+;Distance=324;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;Tigger1:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=rs71955301 (chr4:69994437-69994761);Frequency=0.82
chr4	CG	SV	69994437	69994876	11	+	.	ID=3701;Type=deletion;Left=chr4:69994437-69994876;Right=chr4:69994761-69995128
chr4	CG	SV	69994761	69995128	11	+	.	ID=3701;Type=deletion;Left=chr4:69994437-69994876;Right=chr4:69994761-69995128
chr4	CG	SV	79488149	79494693	126	.	.	ID=3699;Type=deletion;Left=chr4:79488149-79488698+;Right=chr4:79494224-79494693+;Distance=6075;DiscordantMatePairAlignments=126;LeftRepeat=;RightRepeat=;LeftGenes=NM_001166133:+;NM_025074:+;RightGenes=NM_001166133:+;NM_025074:+;XRef=;Frequency=1.00
chr4	CG	SV	79488149	79488698	126	+	.	ID=3699;Type=deletion;Left=chr4:79488149-79488698;Right=chr4:79494224-79494693
chr4	CG	SV	79494224	79494693	126	+	.	ID=3699;Type=deletion;Left=chr4:79488149-79488698;Right=chr4:79494224-79494693
chr4	CG	SV	81107077	81113533	66	.	.	ID=3698;Type=deletion;Left=chr4:81107077-81107527+;Right=chr4:81113122-81113533+;Distance=6045;DiscordantMatePairAlignments=66;LeftRepeat=;RightRepeat=;LeftGenes=NM_058172:-;RightGenes=NM_058172:-;XRef=rs68027105 (chr4:81107086-81113131);Frequency=0.88
chr4	CG	SV	81107077	81107527	66	+	.	ID=3698;Type=deletion;Left=chr4:81107077-81107527;Right=chr4:81113122-81113533
chr4	CG	SV	81113122	81113533	66	+	.	ID=3698;Type=deletion;Left=chr4:81107077-81107527;Right=chr4:81113122-81113533
chr4	CG	SV	81521563	81522280	14	.	.	ID=3697;Type=deletion;Left=chr4:81521563-81521970+;Right=chr4:81521902-81522280+;Distance=339;DiscordantMatePairAlignments=14;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_152770:+;RightGenes=NM_152770:+;XRef=rs35474091 (chr4:81521550-81521889);Frequency=1.00
chr4	CG	SV	81521563	81521970	14	+	.	ID=3697;Type=deletion;Left=chr4:81521563-81521970;Right=chr4:81521902-81522280
chr4	CG	SV	81521902	81522280	14	+	.	ID=3697;Type=deletion;Left=chr4:81521563-81521970;Right=chr4:81521902-81522280
chr4	CG	SV	82210554	82211337	17	.	.	ID=3696;Type=deletion;Left=chr4:82210554-82211045+;Right=chr4:82210875-82211337+;Distance=321;DiscordantMatePairAlignments=17;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6148545 (chr4:82210539-82210860);Frequency=1.00
chr4	CG	SV	82210554	82211045	17	+	.	ID=3696;Type=deletion;Left=chr4:82210554-82211045;Right=chr4:82210875-82211337
chr4	CG	SV	82210875	82211337	17	+	.	ID=3696;Type=deletion;Left=chr4:82210554-82211045;Right=chr4:82210875-82211337
chr4	CG	SV	86783412	86784125	16	.	.	ID=3694;Type=deletion;Left=chr4:86783412-86783887+;Right=chr4:86783743-86784125+;Distance=331;DiscordantMatePairAlignments=16;LeftRepeat=L2:LINE:L2;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=NM_001025616:+;RightGenes=NM_001025616:+;XRef=;Frequency=0.24
chr4	CG	SV	86783412	86783887	16	+	.	ID=3694;Type=deletion;Left=chr4:86783412-86783887;Right=chr4:86783743-86784125
chr4	CG	SV	86783743	86784125	16	+	.	ID=3694;Type=deletion;Left=chr4:86783412-86783887;Right=chr4:86783743-86784125
chr4	CG	SV	86879793	86880467	23	.	.	ID=3693;Type=deletion;Left=chr4:86879793-86880263+;Right=chr4:86880115-86880467+;Distance=322;DiscordantMatePairAlignments=23;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=NM_001025616:+;RightGenes=NM_001025616:+;XRef=rs10705059 (chr4:86879793-86880115);Frequency=1.00
chr4	CG	SV	86879793	86880263	23	+	.	ID=3693;Type=deletion;Left=chr4:86879793-86880263;Right=chr4:86880115-86880467
chr4	CG	SV	86880115	86880467	23	+	.	ID=3693;Type=deletion;Left=chr4:86879793-86880263;Right=chr4:86880115-86880467
chr4	CG	SV	88702914	88705771	98	.	.	ID=3692;Type=deletion;Left=chr4:88702914-88703416+;Right=chr4:88705343-88705771+;Distance=2429;DiscordantMatePairAlignments=98;LeftRepeat=;RightRepeat=L1ME3B:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66992231 (chr4:88702907-88705336);Frequency=0.65
chr4	CG	SV	88702914	88703416	98	+	.	ID=3692;Type=deletion;Left=chr4:88702914-88703416;Right=chr4:88705343-88705771
chr4	CG	SV	88705343	88705771	98	+	.	ID=3692;Type=deletion;Left=chr4:88702914-88703416;Right=chr4:88705343-88705771
chr4	CG	SV	91815816	91822290	59	.	.	ID=3688;Type=deletion;Left=chr4:91815816-91816174+;Right=chr4:91821939-91822290+;Distance=6123;DiscordantMatePairAlignments=59;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001145065:+;NM_207491:+;RightGenes=NM_001145065:+;NM_207491:+;XRef=rs68154073 (chr4:91815806-91821931);Frequency=1.00
chr4	CG	SV	91815816	91816174	59	+	.	ID=3688;Type=deletion;Left=chr4:91815816-91816174;Right=chr4:91821939-91822290
chr4	CG	SV	91821939	91822290	59	+	.	ID=3688;Type=deletion;Left=chr4:91815816-91816174;Right=chr4:91821939-91822290
chr4	CG	SV	93612101	93612836	15	.	.	ID=3684;Type=deletion;Left=chr4:93612101-93612540+;Right=chr4:93612421-93612836+;Distance=320;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=L1ME1:LINE:L1;LeftGenes=NM_001510:+;RightGenes=NM_001510:+;XRef=rs10526544 (chr4:93612101-93612421);Frequency=0.29
chr4	CG	SV	93612101	93612540	15	+	.	ID=3684;Type=deletion;Left=chr4:93612101-93612540;Right=chr4:93612421-93612836
chr4	CG	SV	93612421	93612836	15	+	.	ID=3684;Type=deletion;Left=chr4:93612101-93612540;Right=chr4:93612421-93612836
chr4	CG	SV	94778477	94784916	83	.	.	ID=3683;Type=deletion;Left=chr4:94778477-94778878+;Right=chr4:94784528-94784916+;Distance=6051;DiscordantMatePairAlignments=83;LeftRepeat=;RightRepeat=;LeftGenes=NM_001510:+;RightGenes=NM_001510:+;XRef=rs67415856 (chr4:94778477-94784528);Frequency=0.41
chr4	CG	SV	94778477	94778878	83	+	.	ID=3683;Type=deletion;Left=chr4:94778477-94778878;Right=chr4:94784528-94784916
chr4	CG	SV	94784528	94784916	83	+	.	ID=3683;Type=deletion;Left=chr4:94778477-94778878;Right=chr4:94784528-94784916
chr4	CG	SV	98329680	98330466	17	.	.	ID=3680;Type=deletion;Left=chr4:98329680-98330108+;Right=chr4:98330006-98330466+;Distance=326;DiscordantMatePairAlignments=17;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6148585 (chr4:98329667-98329993);Frequency=0.71
chr4	CG	SV	98329680	98330108	17	+	.	ID=3680;Type=deletion;Left=chr4:98329680-98330108;Right=chr4:98330006-98330466
chr4	CG	SV	98330006	98330466	17	+	.	ID=3680;Type=deletion;Left=chr4:98329680-98330108;Right=chr4:98330006-98330466
chr4	CG	SV	98352413	98353111	12	.	.	ID=3679;Type=deletion;Left=chr4:98352413-98352795+;Right=chr4:98352727-98353111+;Distance=314;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=MER6A:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=rs10526798 (chr4:98352398-98352712);Frequency=0.65
chr4	CG	SV	98352413	98352795	12	+	.	ID=3679;Type=deletion;Left=chr4:98352413-98352795;Right=chr4:98352727-98353111
chr4	CG	SV	98352727	98353111	12	+	.	ID=3679;Type=deletion;Left=chr4:98352413-98352795;Right=chr4:98352727-98353111
chr4	CG	SV	100242071	100242799	23	.	.	ID=3678;Type=deletion;Left=chr4:100242071-100242490+;Right=chr4:100242405-100242799+;Distance=334;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	100242071	100242490	23	+	.	ID=3678;Type=deletion;Left=chr4:100242071-100242490;Right=chr4:100242405-100242799
chr4	CG	SV	100242405	100242799	23	+	.	ID=3678;Type=deletion;Left=chr4:100242071-100242490;Right=chr4:100242405-100242799
chr4	CG	SV	100289327	100290046	10	.	.	ID=3677;Type=deletion;Left=chr4:100289327-100289785+;Right=chr4:100289643-100290046+;Distance=316;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6148595 (chr4:100289311-100289627);Frequency=1.00
chr4	CG	SV	100289327	100289785	10	+	.	ID=3677;Type=deletion;Left=chr4:100289327-100289785;Right=chr4:100289643-100290046
chr4	CG	SV	100289643	100290046	10	+	.	ID=3677;Type=deletion;Left=chr4:100289327-100289785;Right=chr4:100289643-100290046
chr4	CG	SV	104004615	104005376	15	.	.	ID=3675;Type=deletion;Left=chr4:104004615-104005106+;Right=chr4:104004962-104005376+;Distance=347;DiscordantMatePairAlignments=15;LeftRepeat=;RightRepeat=;LeftGenes=NM_181890:-;NM_181893:-;RightGenes=NM_181890:-;NM_181893:-;XRef=rs34567200 (chr4:104004612-104004959);Frequency=0.59
chr4	CG	SV	104004615	104005106	15	+	.	ID=3675;Type=deletion;Left=chr4:104004615-104005106;Right=chr4:104004962-104005376
chr4	CG	SV	104004962	104005376	15	+	.	ID=3675;Type=deletion;Left=chr4:104004615-104005106;Right=chr4:104004962-104005376
chr4	CG	SV	105113495	105114525	53	.	.	ID=3674;Type=deletion;Left=chr4:105113495-105113889+;Right=chr4:105114129-105114525+;Distance=634;DiscordantMatePairAlignments=53;LeftRepeat=HERV4_I:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71662133 (chr4:105113495-105114126);Frequency=0.94
chr4	CG	SV	105113495	105113889	53	+	.	ID=3674;Type=deletion;Left=chr4:105113495-105113889;Right=chr4:105114129-105114525
chr4	CG	SV	105114129	105114525	53	+	.	ID=3674;Type=deletion;Left=chr4:105113495-105113889;Right=chr4:105114129-105114525
chr4	CG	SV	108347271	108351624	84	.	.	ID=3672;Type=deletion;Left=chr4:108347271-108347697+;Right=chr4:108351177-108351624+;Distance=3906;DiscordantMatePairAlignments=84;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66829191 (chr4:108347277-108351183);Frequency=1.00
chr4	CG	SV	108347271	108347697	84	+	.	ID=3672;Type=deletion;Left=chr4:108347271-108347697;Right=chr4:108351177-108351624
chr4	CG	SV	108351177	108351624	84	+	.	ID=3672;Type=deletion;Left=chr4:108347271-108347697;Right=chr4:108351177-108351624
chr4	CG	SV	114205361	114206278	58	.	.	ID=3668;Type=deletion;Left=chr4:114205361-114205760+;Right=chr4:114205856-114206278+;Distance=495;DiscordantMatePairAlignments=58;LeftRepeat=Self chain;Tandem period 33;RightRepeat=Self chain;Tandem period 33;LeftGenes=NM_001127493:+;NM_001148:+;NM_020977:+;RightGenes=NM_001127493:+;NM_001148:+;NM_020977:+;XRef=rs72075860 (chr4:114205429-114205858);Frequency=0.94
chr4	CG	SV	114205361	114205760	58	+	.	ID=3668;Type=deletion;Left=chr4:114205361-114205760;Right=chr4:114205856-114206278
chr4	CG	SV	114205856	114206278	58	+	.	ID=3668;Type=deletion;Left=chr4:114205361-114205760;Right=chr4:114205856-114206278
chr4	CG	SV	120236700	120237443	25	.	.	ID=3665;Type=deletion;Left=chr4:120236700-120237121+;Right=chr4:120237020-120237443+;Distance=320;DiscordantMatePairAlignments=25;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66829965 (chr4:120236700-120237020);Frequency=1.00
chr4	CG	SV	120236700	120237121	25	+	.	ID=3665;Type=deletion;Left=chr4:120236700-120237121;Right=chr4:120237020-120237443
chr4	CG	SV	120237020	120237443	25	+	.	ID=3665;Type=deletion;Left=chr4:120236700-120237121;Right=chr4:120237020-120237443
chr4	CG	SV	120246692	120247489	22	.	.	ID=3664;Type=deletion;Left=chr4:120246692-120247067+;Right=chr4:120247028-120247489+;Distance=336;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;RightRepeat=MLT1K:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr4	CG	SV	120246692	120247067	22	+	.	ID=3664;Type=deletion;Left=chr4:120246692-120247067;Right=chr4:120247028-120247489
chr4	CG	SV	120247028	120247489	22	+	.	ID=3664;Type=deletion;Left=chr4:120246692-120247067;Right=chr4:120247028-120247489
chr4	CG	SV	125163008	125165052	25	.	.	ID=3661;Type=deletion;Left=chr4:125163008-125163486+;Right=chr4:125164642-125165052+;Distance=1634;DiscordantMatePairAlignments=25;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68108143 (chr4:125163017-125164651);Frequency=0.53
chr4	CG	SV	125163008	125163486	25	+	.	ID=3661;Type=deletion;Left=chr4:125163008-125163486;Right=chr4:125164642-125165052
chr4	CG	SV	125164642	125165052	25	+	.	ID=3661;Type=deletion;Left=chr4:125163008-125163486;Right=chr4:125164642-125165052
chr4	CG	SV	130435958	130439409	213	.	.	ID=3660;Type=deletion;Left=chr4:130435958-130436451+;Right=chr4:130438941-130439409+;Distance=2983;DiscordantMatePairAlignments=213;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr4	CG	SV	130435958	130436451	213	+	.	ID=3660;Type=deletion;Left=chr4:130435958-130436451;Right=chr4:130438941-130439409
chr4	CG	SV	130438941	130439409	213	+	.	ID=3660;Type=deletion;Left=chr4:130435958-130436451;Right=chr4:130438941-130439409
chr4	CG	SV	135652479	135655567	46	.	.	ID=3658;Type=deletion;Left=chr4:135652479-135652884+;Right=chr4:135655151-135655567+;Distance=2672;DiscordantMatePairAlignments=46;LeftRepeat=Arthur1:DNA:Tip100;RightRepeat=L1MA9:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72144499 (chr4:135652457-135655151);Frequency=0.71
chr4	CG	SV	135652479	135652884	46	+	.	ID=3658;Type=deletion;Left=chr4:135652479-135652884;Right=chr4:135655151-135655567
chr4	CG	SV	135655151	135655567	46	+	.	ID=3658;Type=deletion;Left=chr4:135652479-135652884;Right=chr4:135655151-135655567
chr4	CG	SV	139185661	139187101	100	.	.	ID=3657;Type=deletion;Left=chr4:139185661-139186130+;Right=chr4:139186668-139187101+;Distance=1007;DiscordantMatePairAlignments=100;LeftRepeat=MER61D:LTR:ERV1;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66508479 (chr4:139185662-139186668);Frequency=0.59
chr4	CG	SV	139185661	139186130	100	+	.	ID=3657;Type=deletion;Left=chr4:139185661-139186130;Right=chr4:139186668-139187101
chr4	CG	SV	139186668	139187101	100	+	.	ID=3657;Type=deletion;Left=chr4:139185661-139186130;Right=chr4:139186668-139187101
chr4	CG	SV	146658263	146660332	60	.	.	ID=3656;Type=deletion;Left=chr4:146658263-146658673+;Right=chr4:146659907-146660332+;Distance=1644;DiscordantMatePairAlignments=60;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001003688:+;NM_005900:+;RightGenes=NM_001003688:+;NM_005900:+;XRef=rs67125785 (chr4:146658263-146659907);Frequency=0.59
chr4	CG	SV	146658263	146658673	60	+	.	ID=3656;Type=deletion;Left=chr4:146658263-146658673;Right=chr4:146659907-146660332
chr4	CG	SV	146659907	146660332	60	+	.	ID=3656;Type=deletion;Left=chr4:146658263-146658673;Right=chr4:146659907-146660332
chr4	CG	SV	152560163	152561502	159	.	.	ID=3655;Type=deletion;Left=chr4:152560163-152560694+;Right=chr4:152561010-152561502+;Distance=847;DiscordantMatePairAlignments=159;LeftRepeat=;RightRepeat=;LeftGenes=NM_001109977:+;RightGenes=NM_001109977:+;XRef=rs72214776 (chr4:152560155-152561002);Frequency=0.94
chr4	CG	SV	152560163	152560694	159	+	.	ID=3655;Type=deletion;Left=chr4:152560163-152560694;Right=chr4:152561010-152561502
chr4	CG	SV	152561010	152561502	159	+	.	ID=3655;Type=deletion;Left=chr4:152560163-152560694;Right=chr4:152561010-152561502
chr4	CG	SV	153315144	153315940	15	.	.	ID=3654;Type=deletion;Left=chr4:153315144-153315741+;Right=chr4:153315743-153315940+;Distance=599;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr4	CG	SV	153315144	153315741	15	+	.	ID=3654;Type=deletion;Left=chr4:153315144-153315741;Right=chr4:153315743-153315940
chr4	CG	SV	153315743	153315940	15	+	.	ID=3654;Type=deletion;Left=chr4:153315144-153315741;Right=chr4:153315743-153315940
chr4	CG	SV	166222125	166224832	22	.	.	ID=3650;Type=deletion;Left=chr4:166222125-166222447+;Right=chr4:166224563-166224832+;Distance=2438;DiscordantMatePairAlignments=22;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_001100389:-;RightGenes=NM_001100389:-;XRef=rs71937308 (chr4:166222054-166224492);Frequency=1.00
chr4	CG	SV	166222125	166222447	22	+	.	ID=3650;Type=deletion;Left=chr4:166222125-166222447;Right=chr4:166224563-166224832
chr4	CG	SV	166224563	166224832	22	+	.	ID=3650;Type=deletion;Left=chr4:166222125-166222447;Right=chr4:166224563-166224832
chr4	CG	SV	167223766	167224790	37	.	.	ID=3649;Type=deletion;Left=chr4:167223766-167223977+;Right=chr4:167224369-167224790+;Distance=603;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;RightRepeat=L1MA8:LINE:L1;Self chain;LeftGenes=NM_012464:+;RightGenes=NM_012464:+;XRef=rs72050237 (chr4:167223766-167224362);Frequency=0.76
chr4	CG	SV	167223766	167223977	37	+	.	ID=3649;Type=deletion;Left=chr4:167223766-167223977;Right=chr4:167224369-167224790
chr4	CG	SV	167224369	167224790	37	+	.	ID=3649;Type=deletion;Left=chr4:167223766-167223977;Right=chr4:167224369-167224790
chr4	CG	SV	167913615	167920025	61	.	.	ID=3647;Type=deletion;Left=chr4:167913615-167914036+;Right=chr4:167919650-167920025+;Distance=6035;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=;LeftGenes=NM_001040159:-;NM_016950:-;RightGenes=NM_001040159:-;NM_016950:-;XRef=rs71929678 (chr4:167913623-167919658);Frequency=0.88
chr4	CG	SV	167913615	167914036	61	+	.	ID=3647;Type=deletion;Left=chr4:167913615-167914036;Right=chr4:167919650-167920025
chr4	CG	SV	167919650	167920025	61	+	.	ID=3647;Type=deletion;Left=chr4:167913615-167914036;Right=chr4:167919650-167920025
chr4	CG	SV	170515039	170515890	49	.	.	ID=3646;Type=deletion;Left=chr4:170515039-170515410+;Right=chr4:170515460-170515890+;Distance=421;DiscordantMatePairAlignments=49;LeftRepeat=AluJo:SINE:Alu;RightRepeat=MER58A:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs67724482 (chr4:170515039-170515460);Frequency=0.82
chr4	CG	SV	170515039	170515410	49	+	.	ID=3646;Type=deletion;Left=chr4:170515039-170515410;Right=chr4:170515460-170515890
chr4	CG	SV	170515460	170515890	49	+	.	ID=3646;Type=deletion;Left=chr4:170515039-170515410;Right=chr4:170515460-170515890
chr4	CG	SV	173661607	173670502	31	.	.	ID=3645;Type=deletion;Left=chr4:173661607-173661942+;Right=chr4:173670095-173670502+;Distance=8488;DiscordantMatePairAlignments=31;LeftRepeat=Self chain;RightRepeat=L1PB1:LINE:L1;LeftGenes=NM_001034845:+;RightGenes=NM_001034845:+;XRef=rs67651552 (chr4:173661607-173670094);Frequency=0.94
chr4	CG	SV	173661607	173661942	31	+	.	ID=3645;Type=deletion;Left=chr4:173661607-173661942;Right=chr4:173670095-173670502
chr4	CG	SV	173670095	173670502	31	+	.	ID=3645;Type=deletion;Left=chr4:173661607-173661942;Right=chr4:173670095-173670502
chr4	CG	SV	175741511	175742329	75	.	.	ID=3644;Type=deletion;Left=chr4:175741511-175741954+;Right=chr4:175741934-175742329+;Distance=423;DiscordantMatePairAlignments=75;LeftRepeat=AluSc:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72035570 (chr4:175741516-175741934);Frequency=0.10
chr4	CG	SV	175741511	175741954	75	+	.	ID=3644;Type=deletion;Left=chr4:175741511-175741954;Right=chr4:175741934-175742329
chr4	CG	SV	175741934	175742329	75	+	.	ID=3644;Type=deletion;Left=chr4:175741511-175741954;Right=chr4:175741934-175742329
chr4	CG	SV	178106326	178107100	11	.	.	ID=3643;Type=deletion;Left=chr4:178106326-178106727+;Right=chr4:178106642-178107100+;Distance=316;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr4	CG	SV	178106326	178106727	11	+	.	ID=3643;Type=deletion;Left=chr4:178106326-178106727;Right=chr4:178106642-178107100
chr4	CG	SV	178106642	178107100	11	+	.	ID=3643;Type=deletion;Left=chr4:178106326-178106727;Right=chr4:178106642-178107100
chr4	CG	SV	178751251	178751989	11	.	.	ID=3641;Type=deletion;Left=chr4:178751251-178751632+;Right=chr4:178751570-178751989+;Distance=319;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66919138 (chr4:178751251-178751570);Frequency=0.82
chr4	CG	SV	178751251	178751632	11	+	.	ID=3641;Type=deletion;Left=chr4:178751251-178751632;Right=chr4:178751570-178751989
chr4	CG	SV	178751570	178751989	11	+	.	ID=3641;Type=deletion;Left=chr4:178751251-178751632;Right=chr4:178751570-178751989
chr4	CG	SV	180300779	180301611	11	.	.	ID=3639;Type=deletion;Left=chr4:180300779-180301182+;Right=chr4:180301154-180301611+;Distance=375;DiscordantMatePairAlignments=11;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=MLT1J:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr4	CG	SV	180300779	180301182	11	+	.	ID=3639;Type=deletion;Left=chr4:180300779-180301182;Right=chr4:180301154-180301611
chr4	CG	SV	180301154	180301611	11	+	.	ID=3639;Type=deletion;Left=chr4:180300779-180301182;Right=chr4:180301154-180301611
chr4	CG	SV	181786434	181787198	11	.	.	ID=3638;Type=deletion;Left=chr4:181786434-181786890+;Right=chr4:181786748-181787198+;Distance=314;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs34554564 (chr4:181786434-181786748);Frequency=0.94
chr4	CG	SV	181786434	181786890	11	+	.	ID=3638;Type=deletion;Left=chr4:181786434-181786890;Right=chr4:181786748-181787198
chr4	CG	SV	181786748	181787198	11	+	.	ID=3638;Type=deletion;Left=chr4:181786434-181786890;Right=chr4:181786748-181787198
chr4	CG	SV	182113786	182115760	152	.	.	ID=3637;Type=deletion;Left=chr4:182113786-182114236+;Right=chr4:182115288-182115760+;Distance=1502;DiscordantMatePairAlignments=152;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66719029 (chr4:182113780-182115282);Frequency=1.00
chr4	CG	SV	182113786	182114236	152	+	.	ID=3637;Type=deletion;Left=chr4:182113786-182114236;Right=chr4:182115288-182115760
chr4	CG	SV	182115288	182115760	152	+	.	ID=3637;Type=deletion;Left=chr4:182113786-182114236;Right=chr4:182115288-182115760
chr4	CG	SV	184494923	184495734	34	.	.	ID=3636;Type=deletion;Left=chr4:184494923-184495128+;Right=chr4:184495553-184495734+;Distance=630;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;Tandem period 42;RightRepeat=Self chain;Tandem period 42;LeftGenes=;RightGenes=;XRef=rs10704947 (chr4:184494864-184495242);Frequency=0.82
chr4	CG	SV	184494923	184495128	34	+	.	ID=3636;Type=deletion;Left=chr4:184494923-184495128;Right=chr4:184495553-184495734
chr4	CG	SV	184495553	184495734	34	+	.	ID=3636;Type=deletion;Left=chr4:184494923-184495128;Right=chr4:184495553-184495734
chr4	CG	SV	184892827	184896394	35	.	.	ID=3635;Type=deletion;Left=chr4:184892827-184893129+;Right=chr4:184895979-184896394+;Distance=3152;DiscordantMatePairAlignments=35;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71162502 (chr4:184892827-184895979);Frequency=0.35
chr4	CG	SV	184892827	184893129	35	+	.	ID=3635;Type=deletion;Left=chr4:184892827-184893129;Right=chr4:184895979-184896394
chr4	CG	SV	184895979	184896394	35	+	.	ID=3635;Type=deletion;Left=chr4:184892827-184893129;Right=chr4:184895979-184896394
chr4	CG	SV	184911437	184913034	17	.	.	ID=3634;Type=deletion;Left=chr4:184911437-184911885+;Right=chr4:184912897-184913034+;Distance=1460;DiscordantMatePairAlignments=17;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr4	CG	SV	184911437	184911885	17	+	.	ID=3634;Type=deletion;Left=chr4:184911437-184911885;Right=chr4:184912897-184913034
chr4	CG	SV	184912897	184913034	17	+	.	ID=3634;Type=deletion;Left=chr4:184911437-184911885;Right=chr4:184912897-184913034
chr4	CG	SV	185902776	185903464	19	.	.	ID=3633;Type=deletion;Left=chr4:185902776-185903229+;Right=chr4:185903094-185903464+;Distance=318;DiscordantMatePairAlignments=19;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=MER50:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs71164403 (chr4:185902776-185903094);Frequency=1.00
chr4	CG	SV	185902776	185903229	19	+	.	ID=3633;Type=deletion;Left=chr4:185902776-185903229;Right=chr4:185903094-185903464
chr4	CG	SV	185903094	185903464	19	+	.	ID=3633;Type=deletion;Left=chr4:185902776-185903229;Right=chr4:185903094-185903464
chr4	CG	SV	186678631	186681470	146	.	.	ID=3630;Type=deletion;Left=chr4:186678631-186679064+;Right=chr4:186681069-186681470+;Distance=2438;DiscordantMatePairAlignments=146;LeftRepeat=;RightRepeat=;LeftGenes=NM_001114107:-;NM_014476:-;RightGenes=NM_001114107:-;NM_014476:-;XRef=;Frequency=0.94
chr4	CG	SV	186678631	186679064	146	+	.	ID=3630;Type=deletion;Left=chr4:186678631-186679064;Right=chr4:186681069-186681470
chr4	CG	SV	186681069	186681470	146	+	.	ID=3630;Type=deletion;Left=chr4:186678631-186679064;Right=chr4:186681069-186681470
chr4	CG	SV	186846405	186846904	19	.	.	ID=1410;Type=tandem-duplication;Left=chr4:186846405-186846653-;Right=chr4:186846703-186846904-;Distance=251;DiscordantMatePairAlignments=19;LeftRepeat=(TAGA)n:Simple_repeat:Simple_repeat;Tandem GATA;RightRepeat=(TA)n:Simple_repeat:Simple_repeat;LeftGenes=NM_001145670:-;NM_001145671:-;NM_001145672:-;NM_001145673:-;NM_003603:-;NM_021069:-;RightGenes=NM_001145670:-;NM_001145671:-;NM_001145672:-;NM_001145673:-;NM_003603:-;NM_021069:-;XRef=;Frequency=0.29
chr4	CG	SV	186846405	186846653	19	-	.	ID=1410;Type=tandem-duplication;Left=chr4:186846405-186846653;Right=chr4:186846703-186846904
chr4	CG	SV	186846703	186846904	19	-	.	ID=1410;Type=tandem-duplication;Left=chr4:186846405-186846653;Right=chr4:186846703-186846904
chr4	CG	SV	190206689	190207478	22	.	.	ID=3628;Type=deletion;Left=chr4:190206689-190207097+;Right=chr4:190207043-190207478+;Distance=354;DiscordantMatePairAlignments=22;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10704951 (chr4:190206670-190207024);Frequency=1.00
chr4	CG	SV	190206689	190207097	22	+	.	ID=3628;Type=deletion;Left=chr4:190206689-190207097;Right=chr4:190207043-190207478
chr4	CG	SV	190207043	190207478	22	+	.	ID=3628;Type=deletion;Left=chr4:190206689-190207097;Right=chr4:190207043-190207478
chr4	CG	SV	190295008	190301593	34	.	.	ID=3627;Type=deletion;Left=chr4:190295008-190295499+;Right=chr4:190301282-190301593+;Distance=6274;DiscordantMatePairAlignments=34;LeftRepeat=L1P1:LINE:L1;RightRepeat=THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67851464 (chr4:190294992-190301266);Frequency=0.94
chr4	CG	SV	190295008	190295499	34	+	.	ID=3627;Type=deletion;Left=chr4:190295008-190295499;Right=chr4:190301282-190301593
chr4	CG	SV	190301282	190301593	34	+	.	ID=3627;Type=deletion;Left=chr4:190295008-190295499;Right=chr4:190301282-190301593
chr4	CG	SV	190342501	190343552	60	.	.	ID=3626;Type=deletion;Left=chr4:190342501-190342866+;Right=chr4:190343307-190343552+;Distance=806;DiscordantMatePairAlignments=60;LeftRepeat=Self chain;Tandem period 161;Tandem period 54;RightRepeat=Self chain;Tandem period 161;Tandem period 54;LeftGenes=;RightGenes=;XRef=rs66954860 (chr4:190342578-190343277);Frequency=1.00
chr4	CG	SV	190342501	190342866	60	+	.	ID=3626;Type=deletion;Left=chr4:190342501-190342866;Right=chr4:190343307-190343552
chr4	CG	SV	190343307	190343552	60	+	.	ID=3626;Type=deletion;Left=chr4:190342501-190342866;Right=chr4:190343307-190343552
chr4	CG	SV	190528425	190529164	15	.	.	ID=3624;Type=deletion;Left=chr4:190528425-190528908+;Right=chr4:190528744-190529164+;Distance=319;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10523783 (chr4:190528412-190528731);Frequency=1.00
chr4	CG	SV	190528425	190528908	15	+	.	ID=3624;Type=deletion;Left=chr4:190528425-190528908;Right=chr4:190528744-190529164
chr4	CG	SV	190528744	190529164	15	+	.	ID=3624;Type=deletion;Left=chr4:190528425-190528908;Right=chr4:190528744-190529164
chr4	CG	SV	190715585	190716027	35	.	.	ID=1409;Type=tandem-duplication;Left=chr4:190715585-190715805-;Right=chr4:190715890-190716027-;Distance=222;DiscordantMatePairAlignments=35;LeftRepeat=SegDup;Tandem period 16;RightRepeat=SegDup;Tandem period 16;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190715585	190715805	35	-	.	ID=1409;Type=tandem-duplication;Left=chr4:190715585-190715805;Right=chr4:190715890-190716027
chr4	CG	SV	190715890	190716027	35	-	.	ID=1409;Type=tandem-duplication;Left=chr4:190715585-190715805;Right=chr4:190715890-190716027
chr4	CG	SV	190772252	190772501	27	.	.	ID=1407;Type=complex;Left=chr4:190772252-190772378-;Right=chr4:190772427-190772501-;Distance=123;DiscordantMatePairAlignments=27;LeftRepeat=SegDup;Self chain;RightRepeat=LTR12C:LTR:ERV1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr4	CG	SV	190772252	190772378	27	-	.	ID=1407;Type=complex;Left=chr4:190772252-190772378;Right=chr4:190772427-190772501
chr4	CG	SV	190772427	190772501	27	-	.	ID=1407;Type=complex;Left=chr4:190772252-190772378;Right=chr4:190772427-190772501
chr4	CG	SV	190772499	190775527	18	.	.	ID=3622;Type=complex;Left=chr4:190772499-190772739+;Right=chr4:190775357-190775527+;Distance=2858;DiscordantMatePairAlignments=18;LeftRepeat=SegDup;Self chain;RightRepeat=LTR12C:LTR:ERV1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190772499	190772739	18	+	.	ID=3622;Type=complex;Left=chr4:190772499-190772739;Right=chr4:190775357-190775527
chr4	CG	SV	190775357	190775527	18	+	.	ID=3622;Type=complex;Left=chr4:190772499-190772739;Right=chr4:190775357-190775527
chr4	CG	SV	190772499	190774030	12	.	.	ID=3623;Type=complex;Left=chr4:190772499-190772897+;Right=chr4:190773924-190774030+;Distance=1425;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr4	CG	SV	190772499	190772897	12	+	.	ID=3623;Type=complex;Left=chr4:190772499-190772897;Right=chr4:190773924-190774030
chr4	CG	SV	190773924	190774030	12	+	.	ID=3623;Type=complex;Left=chr4:190772499-190772897;Right=chr4:190773924-190774030
chr4	CG	SV	190822807	190850110	364	.	.	ID=4836;Type=probable-inversion;Left=chr4:190822807-190823278+;Right=chr4:190849584-190850110-;Distance=27303;DiscordantMatePairAlignments=364;LeftRepeat=Self chain;RightRepeat=LTR12C:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190822807	190823278	364	+	.	ID=4836;Type=probable-inversion;Left=chr4:190822807-190823278;Right=chr4:190849584-190850110
chr4	CG	SV	190849584	190850110	364	+	.	ID=4836;Type=probable-inversion;Left=chr4:190822807-190823278;Right=chr4:190849584-190850110
chr4	CG	SV	190844116	190847695	23	.	.	ID=3620;Type=deletion;Left=chr4:190844116-190844458+;Right=chr4:190847321-190847695+;Distance=3205;DiscordantMatePairAlignments=23;LeftRepeat=SegDup;Self chain;Tandem period 110;Tandem period 57;RightRepeat=MER2:DNA:MER2_type;Self chain;LeftGenes=;RightGenes=;XRef=rs71647284 (chr4:190843933-190847246);Frequency=1.00
chr4	CG	SV	190844116	190844458	23	+	.	ID=3620;Type=deletion;Left=chr4:190844116-190844458;Right=chr4:190847321-190847695
chr4	CG	SV	190847321	190847695	23	+	.	ID=3620;Type=deletion;Left=chr4:190844116-190844458;Right=chr4:190847321-190847695
chr4	CG	SV	190893421	190894685	15	.	.	ID=3618;Type=deletion;Left=chr4:190893421-190893661+;Right=chr4:190894531-190894685+;Distance=1110;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem period 105;Tandem period 35;Tandem period 70;RightRepeat=Self chain;Tandem period 105;Tandem period 35;Tandem period 70;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190893421	190893661	15	+	.	ID=3618;Type=deletion;Left=chr4:190893421-190893661;Right=chr4:190894531-190894685
chr4	CG	SV	190894531	190894685	15	+	.	ID=3618;Type=deletion;Left=chr4:190893421-190893661;Right=chr4:190894531-190894685
chr4	CG	SV	190899926	190901207	68	.	.	ID=3617;Type=deletion;Left=chr4:190899926-190900286+;Right=chr4:190900721-190901207+;Distance=795;DiscordantMatePairAlignments=68;LeftRepeat=L1PBa:LINE:L1;Self chain;RightRepeat=L1PBa:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190899926	190900286	68	+	.	ID=3617;Type=deletion;Left=chr4:190899926-190900286;Right=chr4:190900721-190901207
chr4	CG	SV	190900721	190901207	68	+	.	ID=3617;Type=deletion;Left=chr4:190899926-190900286;Right=chr4:190900721-190901207
chr4	CG	SV	191035650	191038058	20	.	.	ID=3616;Type=deletion;Left=chr4:191035650-191035903+;Right=chr4:191037595-191038058+;Distance=1945;DiscordantMatePairAlignments=20;LeftRepeat=L1PA4:LINE:L1;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	191035650	191035903	20	+	.	ID=3616;Type=deletion;Left=chr4:191035650-191035903;Right=chr4:191037595-191038058
chr4	CG	SV	191037595	191038058	20	+	.	ID=3616;Type=deletion;Left=chr4:191035650-191035903;Right=chr4:191037595-191038058
chr5	CG	SV	540117	540815	85	.	.	ID=3611;Type=deletion;Left=chr5:540117-540646+;Right=chr5:540676-540815+;Distance=559;DiscordantMatePairAlignments=85;LeftRepeat=(CACCG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 15;Tandem period 38;Tandem period 68;RightRepeat=(CACCG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 15;Tandem period 68;LeftGenes=NM_004174:-;RightGenes=NM_004174:-;XRef=rs67969321 (chr5:540079-540691);Frequency=0.88
chr5	CG	SV	540117	540646	85	+	.	ID=3611;Type=deletion;Left=chr5:540117-540646;Right=chr5:540676-540815
chr5	CG	SV	540676	540815	85	+	.	ID=3611;Type=deletion;Left=chr5:540117-540646;Right=chr5:540676-540815
chr5	CG	SV	721070	721807	21	.	.	ID=3610;Type=deletion;Left=chr5:721070-721362+;Right=chr5:721600-721807+;Distance=530;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;Tandem period 289;Tandem period 48;RightRepeat=L1M5:LINE:L1;Self chain;Tandem period 289;Tandem period 48;LeftGenes=NM_007030:-;RightGenes=NM_007030:-;XRef=rs70955282 (chr5:720962-721299);Frequency=0.82
chr5	CG	SV	721070	721362	21	+	.	ID=3610;Type=deletion;Left=chr5:721070-721362;Right=chr5:721600-721807
chr5	CG	SV	721600	721807	21	+	.	ID=3610;Type=deletion;Left=chr5:721070-721362;Right=chr5:721600-721807
chr5	CG	SV	1114296	1114798	17	.	.	ID=3609;Type=deletion;Left=chr5:1114296-1114903+;Right=chr5:1114710-1114798+;Distance=414;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem period 126;Tandem period 162;Tandem period 36;Tandem period 90;RightRepeat=Self chain;Tandem period 126;Tandem period 36;Tandem period 90;LeftGenes=NM_006598:-;RightGenes=NM_006598:-;XRef=;Frequency=0.76
chr5	CG	SV	1114296	1114903	17	+	.	ID=3609;Type=deletion;Left=chr5:1114296-1114903;Right=chr5:1114710-1114798
chr5	CG	SV	1114710	1114798	17	+	.	ID=3609;Type=deletion;Left=chr5:1114296-1114903;Right=chr5:1114710-1114798
chr5	CG	SV	1231294	1234153	53	.	.	ID=3608;Type=deletion;Left=chr5:1231294-1231641+;Right=chr5:1233766-1234153+;Distance=2472;DiscordantMatePairAlignments=53;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 88;LeftGenes=;RightGenes=;XRef=rs68151484 (chr5:1231294-1233733);Frequency=0.71
chr5	CG	SV	1231294	1231641	53	+	.	ID=3608;Type=deletion;Left=chr5:1231294-1231641;Right=chr5:1233766-1234153
chr5	CG	SV	1233766	1234153	53	+	.	ID=3608;Type=deletion;Left=chr5:1231294-1231641;Right=chr5:1233766-1234153
chr5	CG	SV	1291449	1292112	23	.	.	ID=3607;Type=deletion;Left=chr5:1291449-1291941+;Right=chr5:1291784-1292112+;Distance=335;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;Tandem period 112;Tandem period 149;Tandem period 37;RightRepeat=Self chain;Tandem period 149;Tandem period 37;LeftGenes=NM_182632:+;RightGenes=NM_182632:+;XRef=rs72365262 (chr5:1291456-1291791);Frequency=0.53
chr5	CG	SV	1291449	1291941	23	+	.	ID=3607;Type=deletion;Left=chr5:1291449-1291941;Right=chr5:1291784-1292112
chr5	CG	SV	1291784	1292112	23	+	.	ID=3607;Type=deletion;Left=chr5:1291449-1291941;Right=chr5:1291784-1292112
chr5	CG	SV	1716820	1717577	35	.	.	ID=3606;Type=deletion;Left=chr5:1716820-1717129+;Right=chr5:1717352-1717577+;Distance=532;DiscordantMatePairAlignments=35;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66494513 (chr5:1716815-1717347);Frequency=0.82
chr5	CG	SV	1716820	1717129	35	+	.	ID=3606;Type=deletion;Left=chr5:1716820-1717129;Right=chr5:1717352-1717577
chr5	CG	SV	1717352	1717577	35	+	.	ID=3606;Type=deletion;Left=chr5:1716820-1717129;Right=chr5:1717352-1717577
chr5	CG	SV	1977591	1978701	199	.	.	ID=3605;Type=deletion;Left=chr5:1977591-1978072+;Right=chr5:1978203-1978701+;Distance=612;DiscordantMatePairAlignments=199;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72120772 (chr5:1977590-1978202);Frequency=0.94
chr5	CG	SV	1977591	1978072	199	+	.	ID=3605;Type=deletion;Left=chr5:1977591-1978072;Right=chr5:1978203-1978701
chr5	CG	SV	1978203	1978701	199	+	.	ID=3605;Type=deletion;Left=chr5:1977591-1978072;Right=chr5:1978203-1978701
chr5	CG	SV	1994156	1994882	15	.	.	ID=3604;Type=deletion;Left=chr5:1994156-1994601+;Right=chr5:1994466-1994882+;Distance=310;DiscordantMatePairAlignments=15;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=L1M:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72274606 (chr5:1994144-1994454);Frequency=0.71
chr5	CG	SV	1994156	1994601	15	+	.	ID=3604;Type=deletion;Left=chr5:1994156-1994601;Right=chr5:1994466-1994882
chr5	CG	SV	1994466	1994882	15	+	.	ID=3604;Type=deletion;Left=chr5:1994156-1994601;Right=chr5:1994466-1994882
chr5	CG	SV	2021406	2025108	81	.	.	ID=3603;Type=deletion;Left=chr5:2021406-2021883+;Right=chr5:2024594-2025108+;Distance=3188;DiscordantMatePairAlignments=81;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71809671 (chr5:2021413-2024601);Frequency=1.00
chr5	CG	SV	2021406	2021883	81	+	.	ID=3603;Type=deletion;Left=chr5:2021406-2021883;Right=chr5:2024594-2025108
chr5	CG	SV	2024594	2025108	81	+	.	ID=3603;Type=deletion;Left=chr5:2021406-2021883;Right=chr5:2024594-2025108
chr5	CG	SV	3555327	3556146	26	.	.	ID=3601;Type=deletion;Left=chr5:3555327-3555732+;Right=chr5:3555655-3556146+;Distance=328;DiscordantMatePairAlignments=26;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70947987 (chr5:3555327-3555655);Frequency=1.00
chr5	CG	SV	3555327	3555732	26	+	.	ID=3601;Type=deletion;Left=chr5:3555327-3555732;Right=chr5:3555655-3556146
chr5	CG	SV	3555655	3556146	26	+	.	ID=3601;Type=deletion;Left=chr5:3555327-3555732;Right=chr5:3555655-3556146
chr5	CG	SV	7274942	7275746	10	.	.	ID=3600;Type=deletion;Left=chr5:7274942-7275375+;Right=chr5:7275262-7275746+;Distance=320;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=L1MCc:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71901284 (chr5:7274933-7275253);Frequency=0.76
chr5	CG	SV	7274942	7275375	10	+	.	ID=3600;Type=deletion;Left=chr5:7274942-7275375;Right=chr5:7275262-7275746
chr5	CG	SV	7275262	7275746	10	+	.	ID=3600;Type=deletion;Left=chr5:7274942-7275375;Right=chr5:7275262-7275746
chr5	CG	SV	9464774	9465540	34	.	.	ID=3598;Type=deletion;Left=chr5:9464774-9465273+;Right=chr5:9465088-9465540+;Distance=314;DiscordantMatePairAlignments=34;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_003966:-;RightGenes=NM_003966:-;XRef=rs10530022 (chr5:9464760-9465074);Frequency=1.00
chr5	CG	SV	9464774	9465273	34	+	.	ID=3598;Type=deletion;Left=chr5:9464774-9465273;Right=chr5:9465088-9465540
chr5	CG	SV	9465088	9465540	34	+	.	ID=3598;Type=deletion;Left=chr5:9464774-9465273;Right=chr5:9465088-9465540
chr5	CG	SV	10627956	10628761	27	.	.	ID=3596;Type=deletion;Left=chr5:10627956-10628291+;Right=chr5:10628301-10628761+;Distance=345;DiscordantMatePairAlignments=27;LeftRepeat=AluJo:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_001164440:+;RightGenes=NM_001164440:+;XRef=rs10523499 (chr5:10627956-10628292);Frequency=1.00
chr5	CG	SV	10627956	10628291	27	+	.	ID=3596;Type=deletion;Left=chr5:10627956-10628291;Right=chr5:10628301-10628761
chr5	CG	SV	10628301	10628761	27	+	.	ID=3596;Type=deletion;Left=chr5:10627956-10628291;Right=chr5:10628301-10628761
chr5	CG	SV	10691994	10693614	153	.	.	ID=3595;Type=deletion;Left=chr5:10691994-10692345+;Right=chr5:10693151-10693614+;Distance=1157;DiscordantMatePairAlignments=153;LeftRepeat=Self chain;Tandem period 31;Tandem period 59;RightRepeat=(GCGTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 31;LeftGenes=NM_001164440:+;RightGenes=NM_001164440:+;XRef=;Frequency=0.59
chr5	CG	SV	10691994	10692345	153	+	.	ID=3595;Type=deletion;Left=chr5:10691994-10692345;Right=chr5:10693151-10693614
chr5	CG	SV	10693151	10693614	153	+	.	ID=3595;Type=deletion;Left=chr5:10691994-10692345;Right=chr5:10693151-10693614
chr5	CG	SV	12864019	12873947	134	.	.	ID=3593;Type=deletion;Left=chr5:12864019-12864372+;Right=chr5:12873525-12873947+;Distance=9506;DiscordantMatePairAlignments=134;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66987566 (chr5:12864019-12873525);Frequency=0.88
chr5	CG	SV	12864019	12864372	134	+	.	ID=3593;Type=deletion;Left=chr5:12864019-12864372;Right=chr5:12873525-12873947
chr5	CG	SV	12873525	12873947	134	+	.	ID=3593;Type=deletion;Left=chr5:12864019-12864372;Right=chr5:12873525-12873947
chr5	CG	SV	13469596	13476333	279	.	.	ID=3592;Type=deletion;Left=chr5:13469596-13470091+;Right=chr5:13475858-13476333+;Distance=6262;DiscordantMatePairAlignments=279;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr5	CG	SV	13469596	13470091	279	+	.	ID=3592;Type=deletion;Left=chr5:13469596-13470091;Right=chr5:13475858-13476333
chr5	CG	SV	13475858	13476333	279	+	.	ID=3592;Type=deletion;Left=chr5:13469596-13470091;Right=chr5:13475858-13476333
chr5	CG	SV	13948092	13948809	16	.	.	ID=3591;Type=deletion;Left=chr5:13948092-13948628+;Right=chr5:13948389-13948809+;Distance=297;DiscordantMatePairAlignments=16;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_001369:-;RightGenes=NM_001369:-;XRef=rs70948002 (chr5:13948092-13948389);Frequency=1.00
chr5	CG	SV	13948092	13948628	16	+	.	ID=3591;Type=deletion;Left=chr5:13948092-13948628;Right=chr5:13948389-13948809
chr5	CG	SV	13948389	13948809	16	+	.	ID=3591;Type=deletion;Left=chr5:13948092-13948628;Right=chr5:13948389-13948809
chr5	CG	SV	17652613	17666825	15	.	.	ID=3587;Type=deletion;Left=chr5:17652613-17652987+;Right=chr5:17666711-17666825+;Distance=14098;DiscordantMatePairAlignments=15;LeftRepeat=SegDup;Self chain;RightRepeat=Charlie2a:DNA:MER1_type;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	17652613	17652987	15	+	.	ID=3587;Type=deletion;Left=chr5:17652613-17652987;Right=chr5:17666711-17666825
chr5	CG	SV	17666711	17666825	15	+	.	ID=3587;Type=deletion;Left=chr5:17652613-17652987;Right=chr5:17666711-17666825
chr5	CG	SV	24406299	24409600	16	.	.	ID=3582;Type=deletion;Left=chr5:24406299-24406637+;Right=chr5:24409208-24409600+;Distance=2909;DiscordantMatePairAlignments=16;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=L1HS:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66638920 (chr5:24406284-24409193);Frequency=0.94
chr5	CG	SV	24406299	24406637	16	+	.	ID=3582;Type=deletion;Left=chr5:24406299-24406637;Right=chr5:24409208-24409600
chr5	CG	SV	24409208	24409600	16	+	.	ID=3582;Type=deletion;Left=chr5:24406299-24406637;Right=chr5:24409208-24409600
chr5	CG	SV	26146960	26147688	22	.	.	ID=3578;Type=deletion;Left=chr5:26146960-26147417+;Right=chr5:26147286-26147688+;Distance=326;DiscordantMatePairAlignments=22;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70950610 (chr5:26146960-26147286);Frequency=1.00
chr5	CG	SV	26146960	26147417	22	+	.	ID=3578;Type=deletion;Left=chr5:26146960-26147417;Right=chr5:26147286-26147688
chr5	CG	SV	26147286	26147688	22	+	.	ID=3578;Type=deletion;Left=chr5:26146960-26147417;Right=chr5:26147286-26147688
chr5	CG	SV	29105074	29105382	26	.	.	ID=4835;Type=probable-inversion;Left=chr5:29105074-29105605+;Right=chr5:29105128-29105382-;Distance=308;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=THE1-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr5	CG	SV	29105074	29105605	26	+	.	ID=4835;Type=probable-inversion;Left=chr5:29105074-29105605;Right=chr5:29105128-29105382
chr5	CG	SV	29105128	29105382	26	+	.	ID=4835;Type=probable-inversion;Left=chr5:29105074-29105605;Right=chr5:29105128-29105382
chr5	CG	SV	31713194	31713872	19	.	.	ID=3577;Type=deletion;Left=chr5:31713194-31713673+;Right=chr5:31713515-31713872+;Distance=321;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;RightRepeat=L1ME1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs70950612 (chr5:31713198-31713519);Frequency=1.00
chr5	CG	SV	31713194	31713673	19	+	.	ID=3577;Type=deletion;Left=chr5:31713194-31713673;Right=chr5:31713515-31713872
chr5	CG	SV	31713515	31713872	19	+	.	ID=3577;Type=deletion;Left=chr5:31713194-31713673;Right=chr5:31713515-31713872
chr5	CG	SV	33391332	33392115	12	.	.	ID=3575;Type=deletion;Left=chr5:33391332-33391760+;Right=chr5:33391663-33392115+;Distance=331;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72430043 (chr5:33391320-33391651);Frequency=0.94
chr5	CG	SV	33391332	33391760	12	+	.	ID=3575;Type=deletion;Left=chr5:33391332-33391760;Right=chr5:33391663-33392115
chr5	CG	SV	33391663	33392115	12	+	.	ID=3575;Type=deletion;Left=chr5:33391332-33391760;Right=chr5:33391663-33392115
chr5	CG	SV	42201693	42203927	136	.	.	ID=3571;Type=deletion;Left=chr5:42201693-42202067+;Right=chr5:42203534-42203927+;Distance=1841;DiscordantMatePairAlignments=136;LeftRepeat=L1M:LINE:L1;RightRepeat=L1MEc:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72268069 (chr5:42201685-42203526);Frequency=0.82
chr5	CG	SV	42201693	42202067	136	+	.	ID=3571;Type=deletion;Left=chr5:42201693-42202067;Right=chr5:42203534-42203927
chr5	CG	SV	42203534	42203927	136	+	.	ID=3571;Type=deletion;Left=chr5:42201693-42202067;Right=chr5:42203534-42203927
chr5	CG	SV	52267545	52268333	29	.	.	ID=3567;Type=deletion;Left=chr5:52267545-52267975+;Right=chr5:52267878-52268333+;Distance=333;DiscordantMatePairAlignments=29;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_181501:+;RightGenes=NM_181501:+;XRef=rs35347024 (chr5:52267545-52267878);Frequency=1.00
chr5	CG	SV	52267545	52267975	29	+	.	ID=3567;Type=deletion;Left=chr5:52267545-52267975;Right=chr5:52267878-52268333
chr5	CG	SV	52267878	52268333	29	+	.	ID=3567;Type=deletion;Left=chr5:52267545-52267975;Right=chr5:52267878-52268333
chr5	CG	SV	53212698	53213455	30	.	.	ID=3566;Type=deletion;Left=chr5:53212698-53213185+;Right=chr5:53213003-53213455+;Distance=305;DiscordantMatePairAlignments=30;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs33919885 (chr5:53212685-53212990);Frequency=1.00
chr5	CG	SV	53212698	53213185	30	+	.	ID=3566;Type=deletion;Left=chr5:53212698-53213185;Right=chr5:53213003-53213455
chr5	CG	SV	53213003	53213455	30	+	.	ID=3566;Type=deletion;Left=chr5:53212698-53213185;Right=chr5:53213003-53213455
chr5	CG	SV	55465036	55466380	16	.	.	ID=3565;Type=deletion;Left=chr5:55465036-55465486+;Right=chr5:55466179-55466380+;Distance=1143;DiscordantMatePairAlignments=16;LeftRepeat=AluSg:SINE:Alu;RightRepeat=L1MC1:LINE:L1;LeftGenes=NM_024669:-;RightGenes=NM_024669:-;XRef=;Frequency=0.65
chr5	CG	SV	55465036	55465486	16	+	.	ID=3565;Type=deletion;Left=chr5:55465036-55465486;Right=chr5:55466179-55466380
chr5	CG	SV	55466179	55466380	16	+	.	ID=3565;Type=deletion;Left=chr5:55465036-55465486;Right=chr5:55466179-55466380
chr5	CG	SV	57359235	57369975	84	.	.	ID=3564;Type=deletion;Left=chr5:57359235-57359784+;Right=chr5:57369537-57369975+;Distance=10302;DiscordantMatePairAlignments=84;LeftRepeat=;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr5	CG	SV	57359235	57359784	84	+	.	ID=3564;Type=deletion;Left=chr5:57359235-57359784;Right=chr5:57369537-57369975
chr5	CG	SV	57369537	57369975	84	+	.	ID=3564;Type=deletion;Left=chr5:57359235-57359784;Right=chr5:57369537-57369975
chr5	CG	SV	57715750	57722365	162	.	.	ID=3563;Type=deletion;Left=chr5:57715750-57716166+;Right=chr5:57721859-57722365+;Distance=6109;DiscordantMatePairAlignments=162;LeftRepeat=;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Tandem A;LeftGenes=;RightGenes=;XRef=rs67036290 (chr5:57715758-57721867);Frequency=1.00
chr5	CG	SV	57715750	57716166	162	+	.	ID=3563;Type=deletion;Left=chr5:57715750-57716166;Right=chr5:57721859-57722365
chr5	CG	SV	57721859	57722365	162	+	.	ID=3563;Type=deletion;Left=chr5:57715750-57716166;Right=chr5:57721859-57722365
chr5	CG	SV	60037466	60039907	189	.	.	ID=3562;Type=deletion;Left=chr5:60037466-60037936+;Right=chr5:60039427-60039907+;Distance=1961;DiscordantMatePairAlignments=189;LeftRepeat=MLT1E3:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67780732 (chr5:60037461-60039422);Frequency=0.88
chr5	CG	SV	60037466	60037936	189	+	.	ID=3562;Type=deletion;Left=chr5:60037466-60037936;Right=chr5:60039427-60039907
chr5	CG	SV	60039427	60039907	189	+	.	ID=3562;Type=deletion;Left=chr5:60037466-60037936;Right=chr5:60039427-60039907
chr5	CG	SV	65063855	65066575	152	.	.	ID=3559;Type=deletion;Left=chr5:65063855-65064322+;Right=chr5:65066152-65066575+;Distance=2297;DiscordantMatePairAlignments=152;LeftRepeat=SegDup;Self chain;RightRepeat=;LeftGenes=NM_020726:+;RightGenes=NM_020726:+;XRef=rs71731346 (chr5:65063855-65066152);Frequency=0.65
chr5	CG	SV	65063855	65064322	152	+	.	ID=3559;Type=deletion;Left=chr5:65063855-65064322;Right=chr5:65066152-65066575
chr5	CG	SV	65066152	65066575	152	+	.	ID=3559;Type=deletion;Left=chr5:65063855-65064322;Right=chr5:65066152-65066575
chr5	CG	SV	65381812	65382531	10	.	.	ID=3558;Type=deletion;Left=chr5:65381812-65382251+;Right=chr5:65382142-65382531+;Distance=330;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_001006600:+;NM_018695:+;RightGenes=NM_001006600:+;NM_018695:+;XRef=rs66556164 (chr5:65381812-65382142);Frequency=1.00
chr5	CG	SV	65381812	65382251	10	+	.	ID=3558;Type=deletion;Left=chr5:65381812-65382251;Right=chr5:65382142-65382531
chr5	CG	SV	65382142	65382531	10	+	.	ID=3558;Type=deletion;Left=chr5:65381812-65382251;Right=chr5:65382142-65382531
chr5	CG	SV	73684752	73685480	24	.	.	ID=3555;Type=deletion;Left=chr5:73684752-73685205+;Right=chr5:73685070-73685480+;Distance=318;DiscordantMatePairAlignments=24;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs34317652 (chr5:73684741-73685059);Frequency=1.00
chr5	CG	SV	73684752	73685205	24	+	.	ID=3555;Type=deletion;Left=chr5:73684752-73685205;Right=chr5:73685070-73685480
chr5	CG	SV	73685070	73685480	24	+	.	ID=3555;Type=deletion;Left=chr5:73684752-73685205;Right=chr5:73685070-73685480
chr5	CG	SV	77084115	77084890	12	.	.	ID=3554;Type=deletion;Left=chr5:77084115-77084401+;Right=chr5:77084451-77084890+;Distance=336;DiscordantMatePairAlignments=12;LeftRepeat=(TTTTG)n:Simple_repeat:Simple_repeat;Tandem TTTTG;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_004607:-;RightGenes=NM_004607:-;XRef=;Frequency=0.82
chr5	CG	SV	77084115	77084401	12	+	.	ID=3554;Type=deletion;Left=chr5:77084115-77084401;Right=chr5:77084451-77084890
chr5	CG	SV	77084451	77084890	12	+	.	ID=3554;Type=deletion;Left=chr5:77084115-77084401;Right=chr5:77084451-77084890
chr5	CG	SV	78145555	78148076	135	.	.	ID=3551;Type=deletion;Left=chr5:78145555-78145852+;Right=chr5:78147626-78148076+;Distance=2071;DiscordantMatePairAlignments=135;LeftRepeat=;RightRepeat=;LeftGenes=NM_000046:-;RightGenes=NM_000046:-;NM_198709:-;XRef=rs72356644 (chr5:78145555-78147626);Frequency=0.35
chr5	CG	SV	78145555	78145852	135	+	.	ID=3551;Type=deletion;Left=chr5:78145555-78145852;Right=chr5:78147626-78148076
chr5	CG	SV	78147626	78148076	135	+	.	ID=3551;Type=deletion;Left=chr5:78145555-78145852;Right=chr5:78147626-78148076
chr5	CG	SV	78312519	78313292	21	.	.	ID=3550;Type=complex;Left=chr5:78312519-78312980+;Right=chr5:78312843-78313292+;Distance=324;DiscordantMatePairAlignments=21;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_000046:-;NM_198709:-;RightGenes=NM_000046:-;NM_198709:-;XRef=rs33912587 (chr5:78312504-78312828);Frequency=1.00
chr5	CG	SV	78312519	78312980	21	+	.	ID=3550;Type=complex;Left=chr5:78312519-78312980;Right=chr5:78312843-78313292
chr5	CG	SV	78312843	78313292	21	+	.	ID=3550;Type=complex;Left=chr5:78312519-78312980;Right=chr5:78312843-78313292
chr5	CG	SV	78313495	78314293	22	.	.	ID=3549;Type=complex;Left=chr5:78313495-78313983+;Right=chr5:78313814-78314293+;Distance=319;DiscordantMatePairAlignments=22;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_000046:-;NM_198709:-;RightGenes=NM_000046:-;NM_198709:-;XRef=rs67403208 (chr5:78313495-78313814);Frequency=1.00
chr5	CG	SV	78313495	78313983	22	+	.	ID=3549;Type=complex;Left=chr5:78313495-78313983;Right=chr5:78313814-78314293
chr5	CG	SV	78313814	78314293	22	+	.	ID=3549;Type=complex;Left=chr5:78313495-78313983;Right=chr5:78313814-78314293
chr5	CG	SV	80075137	80075831	20	.	.	ID=3548;Type=deletion;Left=chr5:80075137-80075599+;Right=chr5:80075446-80075831+;Distance=309;DiscordantMatePairAlignments=20;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_002439:+;RightGenes=NM_002439:+;XRef=;Frequency=0.88
chr5	CG	SV	80075137	80075599	20	+	.	ID=3548;Type=deletion;Left=chr5:80075137-80075599;Right=chr5:80075446-80075831
chr5	CG	SV	80075446	80075831	20	+	.	ID=3548;Type=deletion;Left=chr5:80075137-80075599;Right=chr5:80075446-80075831
chr5	CG	SV	81218246	81219034	22	.	.	ID=3546;Type=deletion;Left=chr5:81218246-81218543+;Right=chr5:81218591-81219034+;Distance=345;DiscordantMatePairAlignments=22;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10529476 (chr5:81218246-81218588);Frequency=0.94
chr5	CG	SV	81218246	81218543	22	+	.	ID=3546;Type=deletion;Left=chr5:81218246-81218543;Right=chr5:81218591-81219034
chr5	CG	SV	81218591	81219034	22	+	.	ID=3546;Type=deletion;Left=chr5:81218246-81218543;Right=chr5:81218591-81219034
chr5	CG	SV	82941831	82942693	38	.	.	ID=3544;Type=deletion;Left=chr5:82941831-82942211+;Right=chr5:82942150-82942693+;Distance=319;DiscordantMatePairAlignments=38;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68156380 (chr5:82941814-82942133);Frequency=0.59
chr5	CG	SV	82941831	82942211	38	+	.	ID=3544;Type=deletion;Left=chr5:82941831-82942211;Right=chr5:82942150-82942693
chr5	CG	SV	82942150	82942693	38	+	.	ID=3544;Type=deletion;Left=chr5:82941831-82942211;Right=chr5:82942150-82942693
chr5	CG	SV	88067771	88068562	34	.	.	ID=3542;Type=deletion;Left=chr5:88067771-88068229+;Right=chr5:88068101-88068562+;Distance=330;DiscordantMatePairAlignments=34;LeftRepeat=;RightRepeat=;LeftGenes=NM_001131005:-;NM_002397:-;RightGenes=NM_001131005:-;NM_002397:-;XRef=rs66495905 (chr5:88067768-88068098);Frequency=1.00
chr5	CG	SV	88067771	88068229	34	+	.	ID=3542;Type=deletion;Left=chr5:88067771-88068229;Right=chr5:88068101-88068562
chr5	CG	SV	88068101	88068562	34	+	.	ID=3542;Type=deletion;Left=chr5:88067771-88068229;Right=chr5:88068101-88068562
chr5	CG	SV	89896191	89896968	20	.	.	ID=3540;Type=deletion;Left=chr5:89896191-89896518+;Right=chr5:89896512-89896968+;Distance=321;DiscordantMatePairAlignments=20;LeftRepeat=L1MB7:LINE:L1;RightRepeat=L1MB7:LINE:L1;LeftGenes=NM_032119:+;NR_003149:+;RightGenes=NM_032119:+;NR_003149:+;XRef=rs10529350 (chr5:89896191-89896512);Frequency=0.82
chr5	CG	SV	89896191	89896518	20	+	.	ID=3540;Type=deletion;Left=chr5:89896191-89896518;Right=chr5:89896512-89896968
chr5	CG	SV	89896512	89896968	20	+	.	ID=3540;Type=deletion;Left=chr5:89896191-89896518;Right=chr5:89896512-89896968
chr5	CG	SV	90535531	90538353	148	.	.	ID=3539;Type=deletion;Left=chr5:90535531-90535927+;Right=chr5:90537854-90538353+;Distance=2323;DiscordantMatePairAlignments=148;LeftRepeat=L1ME2:LINE:L1;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=;RightGenes=;XRef=rs72404559 (chr5:90535531-90537854);Frequency=1.00
chr5	CG	SV	90535531	90535927	148	+	.	ID=3539;Type=deletion;Left=chr5:90535531-90535927;Right=chr5:90537854-90538353
chr5	CG	SV	90537854	90538353	148	+	.	ID=3539;Type=deletion;Left=chr5:90535531-90535927;Right=chr5:90537854-90538353
chr5	CG	SV	93942055	93942787	16	.	.	ID=3537;Type=deletion;Left=chr5:93942055-93942498+;Right=chr5:93942392-93942787+;Distance=337;DiscordantMatePairAlignments=16;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001145678:-;NM_173665:-;RightGenes=NM_001145678:-;NM_173665:-;XRef=rs34837045 (chr5:93942055-93942392);Frequency=0.47
chr5	CG	SV	93942055	93942498	16	+	.	ID=3537;Type=deletion;Left=chr5:93942055-93942498;Right=chr5:93942392-93942787
chr5	CG	SV	93942392	93942787	16	+	.	ID=3537;Type=deletion;Left=chr5:93942055-93942498;Right=chr5:93942392-93942787
chr5	CG	SV	95369082	95369884	49	.	.	ID=3536;Type=deletion;Left=chr5:95369082-95369549+;Right=chr5:95369436-95369884+;Distance=354;DiscordantMatePairAlignments=49;LeftRepeat=;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs34650770 (chr5:95369067-95369421);Frequency=1.00
chr5	CG	SV	95369082	95369549	49	+	.	ID=3536;Type=deletion;Left=chr5:95369082-95369549;Right=chr5:95369436-95369884
chr5	CG	SV	95369436	95369884	49	+	.	ID=3536;Type=deletion;Left=chr5:95369082-95369549;Right=chr5:95369436-95369884
chr5	CG	SV	99636063	99636803	17	.	.	ID=3355;Type=deletion;Left=chr5:99636063-99636487+;Right=chr5:99636375-99636803+;Distance=312;DiscordantMatePairAlignments=17;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;Tigger1:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr5	CG	SV	99636063	99636487	17	+	.	ID=3355;Type=deletion;Left=chr5:99636063-99636487;Right=chr5:99636375-99636803
chr5	CG	SV	99636375	99636803	17	+	.	ID=3355;Type=deletion;Left=chr5:99636063-99636487;Right=chr5:99636375-99636803
chr5	CG	SV	99787375	99788076	10	.	.	ID=3354;Type=deletion;Left=chr5:99787375-99787784+;Right=chr5:99787693-99788076+;Distance=318;DiscordantMatePairAlignments=10;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=LTR19C:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs72242859 (chr5:99787359-99787677);Frequency=1.00
chr5	CG	SV	99787375	99787784	10	+	.	ID=3354;Type=deletion;Left=chr5:99787375-99787784;Right=chr5:99787693-99788076
chr5	CG	SV	99787693	99788076	10	+	.	ID=3354;Type=deletion;Left=chr5:99787375-99787784;Right=chr5:99787693-99788076
chr5	CG	SV	106352650	106354822	153	.	.	ID=3350;Type=deletion;Left=chr5:106352650-106353176+;Right=chr5:106354342-106354822+;Distance=1692;DiscordantMatePairAlignments=153;LeftRepeat=LTR67:LTR:ERVL;RightRepeat=MER65A:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs72419952 (chr5:106352650-106354329);Frequency=0.65
chr5	CG	SV	106352650	106353176	153	+	.	ID=3350;Type=deletion;Left=chr5:106352650-106353176;Right=chr5:106354342-106354822
chr5	CG	SV	106354342	106354822	153	+	.	ID=3350;Type=deletion;Left=chr5:106352650-106353176;Right=chr5:106354342-106354822
chr5	CG	SV	114759225	114759981	14	.	.	ID=3348;Type=deletion;Left=chr5:114759225-114759555+;Right=chr5:114759543-114759981+;Distance=318;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=MER50:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs70950652 (chr5:114759225-114759543);Frequency=1.00
chr5	CG	SV	114759225	114759555	14	+	.	ID=3348;Type=deletion;Left=chr5:114759225-114759555;Right=chr5:114759543-114759981
chr5	CG	SV	114759543	114759981	14	+	.	ID=3348;Type=deletion;Left=chr5:114759225-114759555;Right=chr5:114759543-114759981
chr5	CG	SV	115158366	115159221	44	.	.	ID=3347;Type=deletion;Left=chr5:115158366-115158761+;Right=chr5:115158715-115159221+;Distance=349;DiscordantMatePairAlignments=44;LeftRepeat=MER5A:DNA:MER1_type;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67420920 (chr5:115158366-115158715);Frequency=1.00
chr5	CG	SV	115158366	115158761	44	+	.	ID=3347;Type=deletion;Left=chr5:115158366-115158761;Right=chr5:115158715-115159221
chr5	CG	SV	115158715	115159221	44	+	.	ID=3347;Type=deletion;Left=chr5:115158366-115158761;Right=chr5:115158715-115159221
chr5	CG	SV	115374238	115378966	62	.	.	ID=353;Type=probable-inversion;Left=chr5:115374238-115374637-;Right=chr5:115378804-115378966+;Distance=4167;DiscordantMatePairAlignments=62;LeftRepeat=;RightRepeat=;LeftGenes=NM_173800:+;RightGenes=NM_173800:+;XRef=;Frequency=0.71
chr5	CG	SV	115374238	115374637	62	-	.	ID=353;Type=probable-inversion;Left=chr5:115374238-115374637;Right=chr5:115378804-115378966
chr5	CG	SV	115378804	115378966	62	-	.	ID=353;Type=probable-inversion;Left=chr5:115374238-115374637;Right=chr5:115378804-115378966
chr5	CG	SV	115922047	115922710	12	.	.	ID=3344;Type=deletion;Left=chr5:115922047-115922518+;Right=chr5:115922368-115922710+;Distance=321;DiscordantMatePairAlignments=12;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_020796:-;RightGenes=NM_020796:-;XRef=rs10523848 (chr5:115922035-115922356);Frequency=1.00
chr5	CG	SV	115922047	115922518	12	+	.	ID=3344;Type=deletion;Left=chr5:115922047-115922518;Right=chr5:115922368-115922710
chr5	CG	SV	115922368	115922710	12	+	.	ID=3344;Type=deletion;Left=chr5:115922047-115922518;Right=chr5:115922368-115922710
chr5	CG	SV	116456094	116456755	10	.	.	ID=3343;Type=deletion;Left=chr5:116456094-116456536+;Right=chr5:116456412-116456755+;Distance=318;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66565609 (chr5:116456081-116456399);Frequency=0.76
chr5	CG	SV	116456094	116456536	10	+	.	ID=3343;Type=deletion;Left=chr5:116456094-116456536;Right=chr5:116456412-116456755
chr5	CG	SV	116456412	116456755	10	+	.	ID=3343;Type=deletion;Left=chr5:116456094-116456536;Right=chr5:116456412-116456755
chr5	CG	SV	119043056	119043792	21	.	.	ID=3342;Type=deletion;Left=chr5:119043056-119043494+;Right=chr5:119043376-119043792+;Distance=320;DiscordantMatePairAlignments=21;LeftRepeat=AluYb9:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10523699 (chr5:119043056-119043376);Frequency=1.00
chr5	CG	SV	119043056	119043494	21	+	.	ID=3342;Type=deletion;Left=chr5:119043056-119043494;Right=chr5:119043376-119043792
chr5	CG	SV	119043376	119043792	21	+	.	ID=3342;Type=deletion;Left=chr5:119043056-119043494;Right=chr5:119043376-119043792
chr5	CG	SV	119408045	119410985	97	.	.	ID=3341;Type=deletion;Left=chr5:119408045-119408510+;Right=chr5:119410579-119410985+;Distance=2534;DiscordantMatePairAlignments=97;LeftRepeat=;RightRepeat=L1ME3A:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72401694 (chr5:119408045-119410576);Frequency=0.88
chr5	CG	SV	119408045	119408510	97	+	.	ID=3341;Type=deletion;Left=chr5:119408045-119408510;Right=chr5:119410579-119410985
chr5	CG	SV	119410579	119410985	97	+	.	ID=3341;Type=deletion;Left=chr5:119408045-119408510;Right=chr5:119410579-119410985
chr5	CG	SV	124745257	124745992	16	.	.	ID=3337;Type=deletion;Left=chr5:124745257-124745650+;Right=chr5:124745579-124745992+;Distance=322;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;RightRepeat=MLT1A1-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs68095244 (chr5:124745257-124745579);Frequency=0.71
chr5	CG	SV	124745257	124745650	16	+	.	ID=3337;Type=deletion;Left=chr5:124745257-124745650;Right=chr5:124745579-124745992
chr5	CG	SV	124745579	124745992	16	+	.	ID=3337;Type=deletion;Left=chr5:124745257-124745650;Right=chr5:124745579-124745992
chr5	CG	SV	126486277	126487172	161	.	.	ID=3336;Type=deletion;Left=chr5:126486277-126486712+;Right=chr5:126486715-126487172+;Distance=438;DiscordantMatePairAlignments=161;LeftRepeat=HERV16:LTR:ERVL;RightRepeat=HERV16:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs67355812 (chr5:126486277-126486715);Frequency=0.82
chr5	CG	SV	126486277	126486712	161	+	.	ID=3336;Type=deletion;Left=chr5:126486277-126486712;Right=chr5:126486715-126487172
chr5	CG	SV	126486715	126487172	161	+	.	ID=3336;Type=deletion;Left=chr5:126486277-126486712;Right=chr5:126486715-126487172
chr5	CG	SV	127200231	127201310	12	.	.	ID=3335;Type=deletion;Left=chr5:127200231-127200641+;Right=chr5:127201181-127201310+;Distance=950;DiscordantMatePairAlignments=12;LeftRepeat=THE1C-int:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72270848 (chr5:127200229-127201179);Frequency=0.88
chr5	CG	SV	127200231	127200641	12	+	.	ID=3335;Type=deletion;Left=chr5:127200231-127200641;Right=chr5:127201181-127201310
chr5	CG	SV	127201181	127201310	12	+	.	ID=3335;Type=deletion;Left=chr5:127200231-127200641;Right=chr5:127201181-127201310
chr5	CG	SV	132946870	132953354	229	.	.	ID=3334;Type=deletion;Left=chr5:132946870-132947340+;Right=chr5:132952896-132953354+;Distance=6026;DiscordantMatePairAlignments=229;LeftRepeat=;RightRepeat=;LeftGenes=NM_015082:-;RightGenes=NM_015082:-;XRef=rs72171413 (chr5:132946879-132952905);Frequency=0.24
chr5	CG	SV	132946870	132947340	229	+	.	ID=3334;Type=deletion;Left=chr5:132946870-132947340;Right=chr5:132952896-132953354
chr5	CG	SV	132952896	132953354	229	+	.	ID=3334;Type=deletion;Left=chr5:132946870-132947340;Right=chr5:132952896-132953354
chr5	CG	SV	135143128	135148998	91	.	.	ID=3333;Type=deletion;Left=chr5:135143128-135143643+;Right=chr5:135148610-135148998+;Distance=5482;DiscordantMatePairAlignments=91;LeftRepeat=SATR1:Satellite:Satellite;Self chain;Tandem period 76;RightRepeat=SATR1:Satellite:Satellite;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr5	CG	SV	135143128	135143643	91	+	.	ID=3333;Type=deletion;Left=chr5:135143128-135143643;Right=chr5:135148610-135148998
chr5	CG	SV	135148610	135148998	91	+	.	ID=3333;Type=deletion;Left=chr5:135143128-135143643;Right=chr5:135148610-135148998
chr5	CG	SV	136882600	136884679	67	.	.	ID=3332;Type=deletion;Left=chr5:136882600-136882908+;Right=chr5:136884316-136884679+;Distance=1716;DiscordantMatePairAlignments=67;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg/x:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67020614 (chr5:136882557-136884273);Frequency=1.00
chr5	CG	SV	136882600	136882908	67	+	.	ID=3332;Type=deletion;Left=chr5:136882600-136882908;Right=chr5:136884316-136884679
chr5	CG	SV	136884316	136884679	67	+	.	ID=3332;Type=deletion;Left=chr5:136882600-136882908;Right=chr5:136884316-136884679
chr5	CG	SV	137050477	137052177	29	.	.	ID=3331;Type=deletion;Left=chr5:137050477-137050898+;Right=chr5:137051801-137052177+;Distance=1324;DiscordantMatePairAlignments=29;LeftRepeat=SVA:Other:Other;RightRepeat=;LeftGenes=NM_017415:-;RightGenes=NM_017415:-;XRef=rs66852405 (chr5:137050477-137051801);Frequency=0.82
chr5	CG	SV	137050477	137050898	29	+	.	ID=3331;Type=deletion;Left=chr5:137050477-137050898;Right=chr5:137051801-137052177
chr5	CG	SV	137051801	137052177	29	+	.	ID=3331;Type=deletion;Left=chr5:137050477-137050898;Right=chr5:137051801-137052177
chr5	CG	SV	141439384	141440155	13	.	.	ID=3329;Type=deletion;Left=chr5:141439384-141439872+;Right=chr5:141439689-141440155+;Distance=305;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr5	CG	SV	141439384	141439872	13	+	.	ID=3329;Type=deletion;Left=chr5:141439384-141439872;Right=chr5:141439689-141440155
chr5	CG	SV	141439689	141440155	13	+	.	ID=3329;Type=deletion;Left=chr5:141439384-141439872;Right=chr5:141439689-141440155
chr5	CG	SV	142841383	142846773	210	.	.	ID=3328;Type=deletion;Left=chr5:142841383-142841826+;Right=chr5:142846270-142846773+;Distance=4887;DiscordantMatePairAlignments=210;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr5	CG	SV	142841383	142841826	210	+	.	ID=3328;Type=deletion;Left=chr5:142841383-142841826;Right=chr5:142846270-142846773
chr5	CG	SV	142846270	142846773	210	+	.	ID=3328;Type=deletion;Left=chr5:142841383-142841826;Right=chr5:142846270-142846773
chr5	CG	SV	143492307	143495244	283	.	.	ID=1231;Type=distal-duplication;Left=chr5:143492307-143492681-;Right=chr5:143494750-143495244-;Distance=2563;DiscordantMatePairAlignments=283;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	143492307	143492681	283	-	.	ID=1231;Type=distal-duplication;Left=chr5:143492307-143492681;Right=chr5:143494750-143495244
chr5	CG	SV	143494750	143495244	283	-	.	ID=1231;Type=distal-duplication;Left=chr5:143492307-143492681;Right=chr5:143494750-143495244
chr5	CG	SV	143493060	143495729	237	.	.	ID=3327;Type=distal-duplication;Left=chr5:143493060-143493438+;Right=chr5:143495240-143495729+;Distance=2180;DiscordantMatePairAlignments=237;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	143493060	143493438	237	+	.	ID=3327;Type=distal-duplication;Left=chr5:143493060-143493438;Right=chr5:143495240-143495729
chr5	CG	SV	143495240	143495729	237	+	.	ID=3327;Type=distal-duplication;Left=chr5:143493060-143493438;Right=chr5:143495240-143495729
chr5	CG	SV	144852099	144853418	85	.	.	ID=3326;Type=deletion;Left=chr5:144852099-144852521+;Right=chr5:144853000-144853418+;Distance=901;DiscordantMatePairAlignments=85;LeftRepeat=L1MA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67005411 (chr5:144852097-144852998);Frequency=0.71
chr5	CG	SV	144852099	144852521	85	+	.	ID=3326;Type=deletion;Left=chr5:144852099-144852521;Right=chr5:144853000-144853418
chr5	CG	SV	144853000	144853418	85	+	.	ID=3326;Type=deletion;Left=chr5:144852099-144852521;Right=chr5:144853000-144853418
chr5	CG	SV	146602845	146603622	14	.	.	ID=3325;Type=deletion;Left=chr5:146602845-146603226+;Right=chr5:146603278-146603622+;Distance=433;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_001112724:+;NM_145001:+;RightGenes=NM_001112724:+;NM_145001:+;XRef=;Frequency=0.65
chr5	CG	SV	146602845	146603226	14	+	.	ID=3325;Type=deletion;Left=chr5:146602845-146603226;Right=chr5:146603278-146603622
chr5	CG	SV	146603278	146603622	14	+	.	ID=3325;Type=deletion;Left=chr5:146602845-146603226;Right=chr5:146603278-146603622
chr5	CG	SV	147533232	147534808	198	.	.	ID=4555;Type=complex;Left=chr5:147533232-147533721+;Right=chr5:147534430-147534808-;Distance=1576;DiscordantMatePairAlignments=198;LeftRepeat=;RightRepeat=;LeftGenes=NM_001001325:+;RightGenes=NM_001001325:+;XRef=;Frequency=1.00
chr5	CG	SV	147533232	147533721	198	+	.	ID=4555;Type=complex;Left=chr5:147533232-147533721;Right=chr5:147534430-147534808
chr5	CG	SV	147534430	147534808	198	+	.	ID=4555;Type=complex;Left=chr5:147533232-147533721;Right=chr5:147534430-147534808
chr5	CG	SV	147534063	147535414	132	.	.	ID=352;Type=complex;Left=chr5:147534063-147534432-;Right=chr5:147534971-147535414+;Distance=539;DiscordantMatePairAlignments=132;LeftRepeat=;RightRepeat=MIR3:SINE:MIR;LeftGenes=NM_001001325:+;RightGenes=NM_001001325:+;XRef=;Frequency=1.00
chr5	CG	SV	147534063	147534432	132	-	.	ID=352;Type=complex;Left=chr5:147534063-147534432;Right=chr5:147534971-147535414
chr5	CG	SV	147534971	147535414	132	-	.	ID=352;Type=complex;Left=chr5:147534063-147534432;Right=chr5:147534971-147535414
chr5	CG	SV	151436611	151443036	115	.	.	ID=3324;Type=deletion;Left=chr5:151436611-151437034+;Right=chr5:151442645-151443036+;Distance=6034;DiscordantMatePairAlignments=115;LeftRepeat=Tandem period 22;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70950672 (chr5:151436623-151442657);Frequency=0.88
chr5	CG	SV	151436611	151437034	115	+	.	ID=3324;Type=deletion;Left=chr5:151436611-151437034;Right=chr5:151442645-151443036
chr5	CG	SV	151442645	151443036	115	+	.	ID=3324;Type=deletion;Left=chr5:151436611-151437034;Right=chr5:151442645-151443036
chr5	CG	SV	164298890	164299461	12	.	.	ID=3320;Type=deletion;Left=chr5:164298890-164299337+;Right=chr5:164299200-164299461+;Distance=310;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=MLT1A0:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs34361129 (chr5:164298875-164299185);Frequency=0.76
chr5	CG	SV	164298890	164299337	12	+	.	ID=3320;Type=deletion;Left=chr5:164298890-164299337;Right=chr5:164299200-164299461
chr5	CG	SV	164299200	164299461	12	+	.	ID=3320;Type=deletion;Left=chr5:164298890-164299337;Right=chr5:164299200-164299461
chr5	CG	SV	171656426	171657010	16	.	.	ID=3316;Type=deletion;Left=chr5:171656426-171656918+;Right=chr5:171656746-171657010+;Distance=320;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 32;RightRepeat=MER57A-int:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr5	CG	SV	171656426	171656918	16	+	.	ID=3316;Type=deletion;Left=chr5:171656426-171656918;Right=chr5:171656746-171657010
chr5	CG	SV	171656746	171657010	16	+	.	ID=3316;Type=deletion;Left=chr5:171656426-171656918;Right=chr5:171656746-171657010
chr5	CG	SV	176320185	176323193	35	.	.	ID=3314;Type=deletion;Left=chr5:176320185-176320597+;Right=chr5:176322786-176323193+;Distance=2601;DiscordantMatePairAlignments=35;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem A;LeftGenes=NM_016290:-;RightGenes=NM_016290:-;XRef=;Frequency=0.71
chr5	CG	SV	176320185	176320597	35	+	.	ID=3314;Type=deletion;Left=chr5:176320185-176320597;Right=chr5:176322786-176323193
chr5	CG	SV	176322786	176323193	35	+	.	ID=3314;Type=deletion;Left=chr5:176320185-176320597;Right=chr5:176322786-176323193
chr5	CG	SV	178280968	178286138	190	.	.	ID=3310;Type=deletion;Left=chr5:178280968-178281412+;Right=chr5:178285803-178286138+;Distance=4835;DiscordantMatePairAlignments=190;LeftRepeat=L1MD2:LINE:L1;Self chain;RightRepeat=L1ME3B:LINE:L1;Self chain;LeftGenes=NM_030613:+;RightGenes=NM_030613:+;XRef=;Frequency=0.24
chr5	CG	SV	178280968	178281412	190	+	.	ID=3310;Type=deletion;Left=chr5:178280968-178281412;Right=chr5:178285803-178286138
chr5	CG	SV	178285803	178286138	190	+	.	ID=3310;Type=deletion;Left=chr5:178280968-178281412;Right=chr5:178285803-178286138
chr5	CG	SV	179867159	179867675	17	.	.	ID=1228;Type=tandem-duplication;Left=chr5:179867159-179867424-;Right=chr5:179867417-179867675-;Distance=251;DiscordantMatePairAlignments=17;LeftRepeat=MSTA:LTR:MaLR;RightRepeat=;LeftGenes=NM_015455:+;RightGenes=NM_015455:+;XRef=;Frequency=0.35
chr5	CG	SV	179867159	179867424	17	-	.	ID=1228;Type=tandem-duplication;Left=chr5:179867159-179867424;Right=chr5:179867417-179867675
chr5	CG	SV	179867417	179867675	17	-	.	ID=1228;Type=tandem-duplication;Left=chr5:179867159-179867424;Right=chr5:179867417-179867675
chr5	CG	SV	180501840	180502992	108	.	.	ID=3309;Type=deletion;Left=chr5:180501840-180502258+;Right=chr5:180502585-180502992+;Distance=745;DiscordantMatePairAlignments=108;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67335144 (chr5:180501840-180502585);Frequency=0.24
chr5	CG	SV	180501840	180502258	108	+	.	ID=3309;Type=deletion;Left=chr5:180501840-180502258;Right=chr5:180502585-180502992
chr5	CG	SV	180502585	180502992	108	+	.	ID=3309;Type=deletion;Left=chr5:180501840-180502258;Right=chr5:180502585-180502992
chr6	CG	SV	414137	414923	69	.	.	ID=3308;Type=deletion;Left=chr6:414137-414529+;Right=chr6:414660-414923+;Distance=523;DiscordantMatePairAlignments=69;LeftRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Tandem TCTGTC;Tandem period 10;Tandem period 36;RightRepeat=(TCTCC)n:Simple_repeat:Simple_repeat;Tandem CTCTC;Tandem period 30;Tandem period 36;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	414137	414529	69	+	.	ID=3308;Type=deletion;Left=chr6:414137-414529;Right=chr6:414660-414923
chr6	CG	SV	414660	414923	69	+	.	ID=3308;Type=deletion;Left=chr6:414137-414529;Right=chr6:414660-414923
chr6	CG	SV	611376	613322	121	.	.	ID=3307;Type=deletion;Left=chr6:611376-611802+;Right=chr6:612821-613322+;Distance=1445;DiscordantMatePairAlignments=121;LeftRepeat=;RightRepeat=MLT2B3:LTR:ERVL;LeftGenes=NM_018303:-;RightGenes=NM_018303:-;XRef=;Frequency=0.88
chr6	CG	SV	611376	611802	121	+	.	ID=3307;Type=deletion;Left=chr6:611376-611802;Right=chr6:612821-613322
chr6	CG	SV	612821	613322	121	+	.	ID=3307;Type=deletion;Left=chr6:611376-611802;Right=chr6:612821-613322
chr6	CG	SV	802158	803170	55	.	.	ID=3306;Type=deletion;Left=chr6:802158-802363+;Right=chr6:802916-803170+;Distance=758;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Tandem ATCC;Tandem period 52;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr6	CG	SV	802158	802363	55	+	.	ID=3306;Type=deletion;Left=chr6:802158-802363;Right=chr6:802916-803170
chr6	CG	SV	802916	803170	55	+	.	ID=3306;Type=deletion;Left=chr6:802158-802363;Right=chr6:802916-803170
chr6	CG	SV	1627800	1628372	24	.	.	ID=3305;Type=deletion;Left=chr6:1627800-1628306+;Right=chr6:1628111-1628372+;Distance=311;DiscordantMatePairAlignments=24;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_001500:-;RightGenes=NM_001500:-;XRef=rs71945591 (chr6:1627790-1628101);Frequency=1.00
chr6	CG	SV	1627800	1628306	24	+	.	ID=3305;Type=deletion;Left=chr6:1627800-1628306;Right=chr6:1628111-1628372
chr6	CG	SV	1628111	1628372	24	+	.	ID=3305;Type=deletion;Left=chr6:1627800-1628306;Right=chr6:1628111-1628372
chr6	CG	SV	3995256	3996061	28	.	.	ID=3304;Type=deletion;Left=chr6:3995256-3995757+;Right=chr6:3995575-3996061+;Distance=319;DiscordantMatePairAlignments=28;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_003913:+;RightGenes=NM_003913:+;XRef=rs10522209 (chr6:3995240-3995559);Frequency=1.00
chr6	CG	SV	3995256	3995757	28	+	.	ID=3304;Type=deletion;Left=chr6:3995256-3995757;Right=chr6:3995575-3996061
chr6	CG	SV	3995575	3996061	28	+	.	ID=3304;Type=deletion;Left=chr6:3995256-3995757;Right=chr6:3995575-3996061
chr6	CG	SV	4199961	4200640	67	.	.	ID=3303;Type=deletion;Left=chr6:4199961-4200445+;Right=chr6:4200352-4200640+;Distance=391;DiscordantMatePairAlignments=67;LeftRepeat=Self chain;Tandem period 49;RightRepeat=MER20:DNA:MER1_type;Self chain;LeftGenes=;RightGenes=;XRef=rs72174483 (chr6:4199813-4200156);Frequency=0.29
chr6	CG	SV	4199961	4200445	67	+	.	ID=3303;Type=deletion;Left=chr6:4199961-4200445;Right=chr6:4200352-4200640
chr6	CG	SV	4200352	4200640	67	+	.	ID=3303;Type=deletion;Left=chr6:4199961-4200445;Right=chr6:4200352-4200640
chr6	CG	SV	4982248	4984663	238	.	.	ID=3302;Type=deletion;Left=chr6:4982248-4982690+;Right=chr6:4984184-4984663+;Distance=1936;DiscordantMatePairAlignments=238;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	4982248	4982690	238	+	.	ID=3302;Type=deletion;Left=chr6:4982248-4982690;Right=chr6:4984184-4984663
chr6	CG	SV	4984184	4984663	238	+	.	ID=3302;Type=deletion;Left=chr6:4982248-4982690;Right=chr6:4984184-4984663
chr6	CG	SV	7662383	7662942	16	.	.	ID=3298;Type=deletion;Left=chr6:7662383-7662852+;Right=chr6:7662718-7662942+;Distance=335;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;RightRepeat=L1MDb:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	7662383	7662852	16	+	.	ID=3298;Type=deletion;Left=chr6:7662383-7662852;Right=chr6:7662718-7662942
chr6	CG	SV	7662718	7662942	16	+	.	ID=3298;Type=deletion;Left=chr6:7662383-7662852;Right=chr6:7662718-7662942
chr6	CG	SV	11664092	11664876	40	.	.	ID=3295;Type=deletion;Left=chr6:11664092-11664462+;Right=chr6:11664412-11664876+;Distance=320;DiscordantMatePairAlignments=40;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1MCc:LINE:L1;LeftGenes=NM_001100829:+;RightGenes=NM_001100829:+;XRef=rs70976611 (chr6:11664092-11664412);Frequency=1.00
chr6	CG	SV	11664092	11664462	40	+	.	ID=3295;Type=deletion;Left=chr6:11664092-11664462;Right=chr6:11664412-11664876
chr6	CG	SV	11664412	11664876	40	+	.	ID=3295;Type=deletion;Left=chr6:11664092-11664462;Right=chr6:11664412-11664876
chr6	CG	SV	12011438	12012128	15	.	.	ID=3294;Type=deletion;Left=chr6:12011438-12011884+;Right=chr6:12011750-12012128+;Distance=312;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs35004741 (chr6:12011422-12011734);Frequency=1.00
chr6	CG	SV	12011438	12011884	15	+	.	ID=3294;Type=deletion;Left=chr6:12011438-12011884;Right=chr6:12011750-12012128
chr6	CG	SV	12011750	12012128	15	+	.	ID=3294;Type=deletion;Left=chr6:12011438-12011884;Right=chr6:12011750-12012128
chr6	CG	SV	12540002	12540503	64	.	.	ID=4553;Type=probable-inversion;Left=chr6:12540002-12540458+;Right=chr6:12540240-12540503-;Distance=501;DiscordantMatePairAlignments=64;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr6	CG	SV	12540002	12540458	64	+	.	ID=4553;Type=probable-inversion;Left=chr6:12540002-12540458;Right=chr6:12540240-12540503
chr6	CG	SV	12540240	12540503	64	+	.	ID=4553;Type=probable-inversion;Left=chr6:12540002-12540458;Right=chr6:12540240-12540503
chr6	CG	SV	13990531	13992226	22	.	.	ID=3292;Type=deletion;Left=chr6:13990531-13990911+;Right=chr6:13991834-13992226+;Distance=1303;DiscordantMatePairAlignments=22;LeftRepeat=HERV17:LTR:ERV1;RightRepeat=LTR17:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr6	CG	SV	13990531	13990911	22	+	.	ID=3292;Type=deletion;Left=chr6:13990531-13990911;Right=chr6:13991834-13992226
chr6	CG	SV	13991834	13992226	22	+	.	ID=3292;Type=deletion;Left=chr6:13990531-13990911;Right=chr6:13991834-13992226
chr6	CG	SV	14853260	14854082	56	.	.	ID=3291;Type=deletion;Left=chr6:14853260-14853642+;Right=chr6:14853676-14854082+;Distance=416;DiscordantMatePairAlignments=56;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	14853260	14853642	56	+	.	ID=3291;Type=deletion;Left=chr6:14853260-14853642;Right=chr6:14853676-14854082
chr6	CG	SV	14853676	14854082	56	+	.	ID=3291;Type=deletion;Left=chr6:14853260-14853642;Right=chr6:14853676-14854082
chr6	CG	SV	16992947	16994352	39	.	.	ID=3290;Type=deletion;Left=chr6:16992947-16993328+;Right=chr6:16994075-16994352+;Distance=1128;DiscordantMatePairAlignments=39;LeftRepeat=LTR49:LTR:ERV1;RightRepeat=MER4D1:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr6	CG	SV	16992947	16993328	39	+	.	ID=3290;Type=deletion;Left=chr6:16992947-16993328;Right=chr6:16994075-16994352
chr6	CG	SV	16994075	16994352	39	+	.	ID=3290;Type=deletion;Left=chr6:16992947-16993328;Right=chr6:16994075-16994352
chr6	CG	SV	17580264	17581035	10	.	.	ID=3289;Type=deletion;Left=chr6:17580264-17580482+;Right=chr6:17580577-17581035+;Distance=313;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_006366:+;RightGenes=NM_006366:+;XRef=rs66609224 (chr6:17580264-17580577);Frequency=0.53
chr6	CG	SV	17580264	17580482	10	+	.	ID=3289;Type=deletion;Left=chr6:17580264-17580482;Right=chr6:17580577-17581035
chr6	CG	SV	17580577	17581035	10	+	.	ID=3289;Type=deletion;Left=chr6:17580264-17580482;Right=chr6:17580577-17581035
chr6	CG	SV	18510069	18511316	283	.	.	ID=3288;Type=deletion;Left=chr6:18510069-18510575+;Right=chr6:18510849-18511316+;Distance=780;DiscordantMatePairAlignments=283;LeftRepeat=;RightRepeat=MER103:DNA:DNA;LeftGenes=NM_182757:+;RightGenes=NM_182757:+;XRef=rs66988260 (chr6:18510069-18510849);Frequency=0.94
chr6	CG	SV	18510069	18510575	283	+	.	ID=3288;Type=deletion;Left=chr6:18510069-18510575;Right=chr6:18510849-18511316
chr6	CG	SV	18510849	18511316	283	+	.	ID=3288;Type=deletion;Left=chr6:18510069-18510575;Right=chr6:18510849-18511316
chr6	CG	SV	19784583	19785842	24	.	.	ID=3287;Type=deletion;Left=chr6:19784583-19785060+;Right=chr6:19785628-19785842+;Distance=1045;DiscordantMatePairAlignments=24;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr6	CG	SV	19784583	19785060	24	+	.	ID=3287;Type=deletion;Left=chr6:19784583-19785060;Right=chr6:19785628-19785842
chr6	CG	SV	19785628	19785842	24	+	.	ID=3287;Type=deletion;Left=chr6:19784583-19785060;Right=chr6:19785628-19785842
chr6	CG	SV	19873104	19879541	16	.	.	ID=3286;Type=deletion;Left=chr6:19873104-19873497+;Right=chr6:19879150-19879541+;Distance=6046;DiscordantMatePairAlignments=16;LeftRepeat=L1HS:LINE:L1;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr6	CG	SV	19873104	19873497	16	+	.	ID=3286;Type=deletion;Left=chr6:19873104-19873497;Right=chr6:19879150-19879541
chr6	CG	SV	19879150	19879541	16	+	.	ID=3286;Type=deletion;Left=chr6:19873104-19873497;Right=chr6:19879150-19879541
chr6	CG	SV	22335463	22336215	11	.	.	ID=3284;Type=deletion;Left=chr6:22335463-22335779+;Right=chr6:22335745-22336215+;Distance=282;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10705579 (chr6:22335463-22335745);Frequency=1.00
chr6	CG	SV	22335463	22335779	11	+	.	ID=3284;Type=deletion;Left=chr6:22335463-22335779;Right=chr6:22335745-22336215
chr6	CG	SV	22335745	22336215	11	+	.	ID=3284;Type=deletion;Left=chr6:22335463-22335779;Right=chr6:22335745-22336215
chr6	CG	SV	23408355	23409169	12	.	.	ID=3283;Type=deletion;Left=chr6:23408355-23408660+;Right=chr6:23408677-23409169+;Distance=322;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6149482 (chr6:23408355-23408677);Frequency=1.00
chr6	CG	SV	23408355	23408660	12	+	.	ID=3283;Type=deletion;Left=chr6:23408355-23408660;Right=chr6:23408677-23409169
chr6	CG	SV	23408677	23409169	12	+	.	ID=3283;Type=deletion;Left=chr6:23408355-23408660;Right=chr6:23408677-23409169
chr6	CG	SV	23793974	23794802	21	.	.	ID=3282;Type=deletion;Left=chr6:23793974-23794438+;Right=chr6:23794303-23794802+;Distance=329;DiscordantMatePairAlignments=21;LeftRepeat=MSTD:LTR:MaLR;RightRepeat=MSTD:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr6	CG	SV	23793974	23794438	21	+	.	ID=3282;Type=deletion;Left=chr6:23793974-23794438;Right=chr6:23794303-23794802
chr6	CG	SV	23794303	23794802	21	+	.	ID=3282;Type=deletion;Left=chr6:23793974-23794438;Right=chr6:23794303-23794802
chr6	CG	SV	24919866	24926193	61	.	.	ID=3280;Type=deletion;Left=chr6:24919866-24920396+;Right=chr6:24925941-24926193+;Distance=6075;DiscordantMatePairAlignments=61;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_014722:-;RightGenes=NM_014722:-;XRef=rs72246104 (chr6:24919854-24925929);Frequency=0.94
chr6	CG	SV	24919866	24920396	61	+	.	ID=3280;Type=deletion;Left=chr6:24919866-24920396;Right=chr6:24925941-24926193
chr6	CG	SV	24925941	24926193	61	+	.	ID=3280;Type=deletion;Left=chr6:24919866-24920396;Right=chr6:24925941-24926193
chr6	CG	SV	25755688	25755905	62	.	.	ID=4552;Type=probable-inversion;Left=chr6:25755688-25756088+;Right=chr6:25755686-25755905-;Distance=217;DiscordantMatePairAlignments=62;LeftRepeat=L1ME4a:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	25755688	25756088	62	+	.	ID=4552;Type=probable-inversion;Left=chr6:25755688-25756088;Right=chr6:25755686-25755905
chr6	CG	SV	25755686	25755905	62	+	.	ID=4552;Type=probable-inversion;Left=chr6:25755688-25756088;Right=chr6:25755686-25755905
chr6	CG	SV	26851897	26853507	13	.	.	ID=3279;Type=deletion;Left=chr6:26851897-26852378+;Right=chr6:26853152-26853507+;Distance=1255;DiscordantMatePairAlignments=13;LeftRepeat=SegDup;Self chain;RightRepeat=L1PA2:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs67572983 (chr6:26851897-26853161);Frequency=1.00
chr6	CG	SV	26851897	26852378	13	+	.	ID=3279;Type=deletion;Left=chr6:26851897-26852378;Right=chr6:26853152-26853507
chr6	CG	SV	26853152	26853507	13	+	.	ID=3279;Type=deletion;Left=chr6:26851897-26852378;Right=chr6:26853152-26853507
chr6	CG	SV	29793462	29796543	63	.	.	ID=3278;Type=deletion;Left=chr6:29793462-29793982+;Right=chr6:29796073-29796543+;Distance=2611;DiscordantMatePairAlignments=63;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71757463 (chr6:29793467-29796078);Frequency=0.94
chr6	CG	SV	29793462	29793982	63	+	.	ID=3278;Type=deletion;Left=chr6:29793462-29793982;Right=chr6:29796073-29796543
chr6	CG	SV	29796073	29796543	63	+	.	ID=3278;Type=deletion;Left=chr6:29793462-29793982;Right=chr6:29796073-29796543
chr6	CG	SV	29923090	29923813	25	.	.	ID=3277;Type=deletion;Left=chr6:29923090-29923441+;Right=chr6:29923586-29923813+;Distance=496;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;Tandem period 124;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6149501 (chr6:29922962-29923334);Frequency=0.94
chr6	CG	SV	29923090	29923441	25	+	.	ID=3277;Type=deletion;Left=chr6:29923090-29923441;Right=chr6:29923586-29923813
chr6	CG	SV	29923586	29923813	25	+	.	ID=3277;Type=deletion;Left=chr6:29923090-29923441;Right=chr6:29923586-29923813
chr6	CG	SV	30007761	30009875	31	.	.	ID=3276;Type=deletion;Left=chr6:30007761-30008290+;Right=chr6:30009519-30009875+;Distance=1758;DiscordantMatePairAlignments=31;LeftRepeat=(TCTCCC)n:Simple_repeat:Simple_repeat;Self chain;Tandem CCCTCT;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10705419 (chr6:30007761-30009519);Frequency=0.88
chr6	CG	SV	30007761	30008290	31	+	.	ID=3276;Type=deletion;Left=chr6:30007761-30008290;Right=chr6:30009519-30009875
chr6	CG	SV	30009519	30009875	31	+	.	ID=3276;Type=deletion;Left=chr6:30007761-30008290;Right=chr6:30009519-30009875
chr6	CG	SV	32886732	32888229	96	.	.	ID=3273;Type=deletion;Left=chr6:32886732-32887127+;Right=chr6:32887798-32888229+;Distance=1066;DiscordantMatePairAlignments=96;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=L1MC5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs70976641 (chr6:32886732-32887798);Frequency=0.94
chr6	CG	SV	32886732	32887127	96	+	.	ID=3273;Type=deletion;Left=chr6:32886732-32887127;Right=chr6:32887798-32888229
chr6	CG	SV	32887798	32888229	96	+	.	ID=3273;Type=deletion;Left=chr6:32886732-32887127;Right=chr6:32887798-32888229
chr6	CG	SV	33233898	33235187	134	.	.	ID=3271;Type=deletion;Left=chr6:33233898-33234311+;Right=chr6:33234821-33235187+;Distance=923;DiscordantMatePairAlignments=134;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67134142 (chr6:33233901-33234821);Frequency=0.35
chr6	CG	SV	33233898	33234311	134	+	.	ID=3271;Type=deletion;Left=chr6:33233898-33234311;Right=chr6:33234821-33235187
chr6	CG	SV	33234821	33235187	134	+	.	ID=3271;Type=deletion;Left=chr6:33233898-33234311;Right=chr6:33234821-33235187
chr6	CG	SV	33691452	33694239	186	.	.	ID=3270;Type=deletion;Left=chr6:33691452-33692242+;Right=chr6:33693794-33694239+;Distance=2342;DiscordantMatePairAlignments=186;LeftRepeat=;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=rs72069483 (chr6:33691176-33693823);Frequency=0.53
chr6	CG	SV	33691452	33692242	186	+	.	ID=3270;Type=deletion;Left=chr6:33691452-33692242;Right=chr6:33693794-33694239
chr6	CG	SV	33693794	33694239	186	+	.	ID=3270;Type=deletion;Left=chr6:33691452-33692242;Right=chr6:33693794-33694239
chr6	CG	SV	34045807	34051057	25	.	.	ID=3269;Type=deletion;Left=chr6:34045807-34046208+;Right=chr6:34050675-34051057+;Distance=4868;DiscordantMatePairAlignments=25;LeftRepeat=L1MDa:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr6	CG	SV	34045807	34046208	25	+	.	ID=3269;Type=deletion;Left=chr6:34045807-34046208;Right=chr6:34050675-34051057
chr6	CG	SV	34050675	34051057	25	+	.	ID=3269;Type=deletion;Left=chr6:34045807-34046208;Right=chr6:34050675-34051057
chr6	CG	SV	34807900	34809508	68	.	.	ID=3268;Type=deletion;Left=chr6:34807900-34808218+;Right=chr6:34809096-34809508+;Distance=1196;DiscordantMatePairAlignments=68;LeftRepeat=MIRb:SINE:MIR;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr6	CG	SV	34807900	34808218	68	+	.	ID=3268;Type=deletion;Left=chr6:34807900-34808218;Right=chr6:34809096-34809508
chr6	CG	SV	34809096	34809508	68	+	.	ID=3268;Type=deletion;Left=chr6:34807900-34808218;Right=chr6:34809096-34809508
chr6	CG	SV	35734412	35738058	93	.	.	ID=3267;Type=deletion;Left=chr6:35734412-35734739+;Right=chr6:35737724-35738058+;Distance=3312;DiscordantMatePairAlignments=93;LeftRepeat=L1M4:LINE:L1;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_001145775:-;NM_001145776:-;NM_001145777:-;NM_004117:-;RightGenes=NM_001145775:-;NM_001145776:-;NM_001145777:-;NM_004117:-;XRef=rs70976643 (chr6:35734412-35737724);Frequency=0.82
chr6	CG	SV	35734412	35734739	93	+	.	ID=3267;Type=deletion;Left=chr6:35734412-35734739;Right=chr6:35737724-35738058
chr6	CG	SV	35737724	35738058	93	+	.	ID=3267;Type=deletion;Left=chr6:35734412-35734739;Right=chr6:35737724-35738058
chr6	CG	SV	41972822	41973589	30	.	.	ID=3264;Type=deletion;Left=chr6:41972822-41973274+;Right=chr6:41973385-41973589+;Distance=563;DiscordantMatePairAlignments=30;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr6	CG	SV	41972822	41973274	30	+	.	ID=3264;Type=deletion;Left=chr6:41972822-41973274;Right=chr6:41973385-41973589
chr6	CG	SV	41973385	41973589	30	+	.	ID=3264;Type=deletion;Left=chr6:41972822-41973274;Right=chr6:41973385-41973589
chr6	CG	SV	46075434	46076239	21	.	.	ID=3262;Type=deletion;Left=chr6:46075434-46075874+;Right=chr6:46075761-46076239+;Distance=327;DiscordantMatePairAlignments=21;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=Tigger2a:DNA:MER2_type;LeftGenes=NM_001114086:-;NM_016929:-;RightGenes=NM_001114086:-;NM_016929:-;XRef=rs35303300 (chr6:46075417-46075744);Frequency=0.76
chr6	CG	SV	46075434	46075874	21	+	.	ID=3262;Type=deletion;Left=chr6:46075434-46075874;Right=chr6:46075761-46076239
chr6	CG	SV	46075761	46076239	21	+	.	ID=3262;Type=deletion;Left=chr6:46075434-46075874;Right=chr6:46075761-46076239
chr6	CG	SV	50873930	50874625	10	.	.	ID=3261;Type=deletion;Left=chr6:50873930-50874475+;Right=chr6:50874241-50874625+;Distance=311;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;RightRepeat=MLT1J:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs66664931 (chr6:50873915-50874226);Frequency=0.94
chr6	CG	SV	50873930	50874475	10	+	.	ID=3261;Type=deletion;Left=chr6:50873930-50874475;Right=chr6:50874241-50874625
chr6	CG	SV	50874241	50874625	10	+	.	ID=3261;Type=deletion;Left=chr6:50873930-50874475;Right=chr6:50874241-50874625
chr6	CG	SV	51307435	51308480	83	.	.	ID=3260;Type=deletion;Left=chr6:51307435-51307735+;Right=chr6:51308085-51308480+;Distance=650;DiscordantMatePairAlignments=83;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr6	CG	SV	51307435	51307735	83	+	.	ID=3260;Type=deletion;Left=chr6:51307435-51307735;Right=chr6:51308085-51308480
chr6	CG	SV	51308085	51308480	83	+	.	ID=3260;Type=deletion;Left=chr6:51307435-51307735;Right=chr6:51308085-51308480
chr6	CG	SV	51364259	51365074	36	.	.	ID=3259;Type=deletion;Left=chr6:51364259-51364677+;Right=chr6:51364575-51365074+;Distance=316;DiscordantMatePairAlignments=36;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67954132 (chr6:51364259-51364575);Frequency=0.59
chr6	CG	SV	51364259	51364677	36	+	.	ID=3259;Type=deletion;Left=chr6:51364259-51364677;Right=chr6:51364575-51365074
chr6	CG	SV	51364575	51365074	36	+	.	ID=3259;Type=deletion;Left=chr6:51364259-51364677;Right=chr6:51364575-51365074
chr6	CG	SV	51625323	51626032	14	.	.	ID=3257;Type=deletion;Left=chr6:51625323-51625778+;Right=chr6:51625649-51626032+;Distance=326;DiscordantMatePairAlignments=14;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_138694:-;RightGenes=NM_138694:-;XRef=rs66500881 (chr6:51625308-51625634);Frequency=1.00
chr6	CG	SV	51625323	51625778	14	+	.	ID=3257;Type=deletion;Left=chr6:51625323-51625778;Right=chr6:51625649-51626032
chr6	CG	SV	51625649	51626032	14	+	.	ID=3257;Type=deletion;Left=chr6:51625323-51625778;Right=chr6:51625649-51626032
chr6	CG	SV	51844070	51845170	87	.	.	ID=3256;Type=deletion;Left=chr6:51844070-51844501+;Right=chr6:51844765-51845170+;Distance=695;DiscordantMatePairAlignments=87;LeftRepeat=L1ME1:LINE:L1;RightRepeat=HAL1:LINE:L1;LeftGenes=NM_138694:-;NM_170724:-;RightGenes=NM_138694:-;NM_170724:-;XRef=rs66493455 (chr6:51844068-51844763);Frequency=0.88
chr6	CG	SV	51844070	51844501	87	+	.	ID=3256;Type=deletion;Left=chr6:51844070-51844501;Right=chr6:51844765-51845170
chr6	CG	SV	51844765	51845170	87	+	.	ID=3256;Type=deletion;Left=chr6:51844070-51844501;Right=chr6:51844765-51845170
chr6	CG	SV	51847536	51853920	21	.	.	ID=3255;Type=deletion;Left=chr6:51847536-51847959+;Right=chr6:51853574-51853920+;Distance=6038;DiscordantMatePairAlignments=21;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_138694:-;NM_170724:-;RightGenes=NM_138694:-;NM_170724:-;XRef=rs72097447 (chr6:51847536-51853574);Frequency=0.59
chr6	CG	SV	51847536	51847959	21	+	.	ID=3255;Type=deletion;Left=chr6:51847536-51847959;Right=chr6:51853574-51853920
chr6	CG	SV	51853574	51853920	21	+	.	ID=3255;Type=deletion;Left=chr6:51847536-51847959;Right=chr6:51853574-51853920
chr6	CG	SV	54032467	54036668	99	.	.	ID=1217;Type=complex;Left=chr6:54032467-54032616-;Right=chr6:54036177-54036668-;Distance=4052;DiscordantMatePairAlignments=99;LeftRepeat=;RightRepeat=;LeftGenes=NM_138569:+;RightGenes=NM_138569:+;XRef=;Frequency=0.88
chr6	CG	SV	54032467	54032616	99	-	.	ID=1217;Type=complex;Left=chr6:54032467-54032616;Right=chr6:54036177-54036668
chr6	CG	SV	54036177	54036668	99	-	.	ID=1217;Type=complex;Left=chr6:54032467-54032616;Right=chr6:54036177-54036668
chr6	CG	SV	54032764	54043234	78	.	.	ID=3252;Type=complex;Left=chr6:54032764-54032916+;Right=chr6:54042789-54043234+;Distance=10025;DiscordantMatePairAlignments=78;LeftRepeat=;RightRepeat=;LeftGenes=NM_138569:+;RightGenes=NM_138569:+;XRef=;Frequency=0.88
chr6	CG	SV	54032764	54032916	78	+	.	ID=3252;Type=complex;Left=chr6:54032764-54032916;Right=chr6:54042789-54043234
chr6	CG	SV	54042789	54043234	78	+	.	ID=3252;Type=complex;Left=chr6:54032764-54032916;Right=chr6:54042789-54043234
chr6	CG	SV	54036668	54043124	148	.	.	ID=3253;Type=complex;Left=chr6:54036668-54036952+;Right=chr6:54042787-54043124+;Distance=6119;DiscordantMatePairAlignments=148;LeftRepeat=;RightRepeat=;LeftGenes=NM_138569:+;RightGenes=NM_138569:+;XRef=;Frequency=0.88
chr6	CG	SV	54036668	54036952	148	+	.	ID=3253;Type=complex;Left=chr6:54036668-54036952;Right=chr6:54042787-54043124
chr6	CG	SV	54042787	54043124	148	+	.	ID=3253;Type=complex;Left=chr6:54036668-54036952;Right=chr6:54042787-54043124
chr6	CG	SV	54664408	54665219	32	.	.	ID=3251;Type=deletion;Left=chr6:54664408-54664850+;Right=chr6:54664743-54665219+;Distance=335;DiscordantMatePairAlignments=32;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67674651 (chr6:54664408-54664743);Frequency=1.00
chr6	CG	SV	54664408	54664850	32	+	.	ID=3251;Type=deletion;Left=chr6:54664408-54664850;Right=chr6:54664743-54665219
chr6	CG	SV	54664743	54665219	32	+	.	ID=3251;Type=deletion;Left=chr6:54664408-54664850;Right=chr6:54664743-54665219
chr6	CG	SV	54972337	54973081	29	.	.	ID=3250;Type=deletion;Left=chr6:54972337-54972855+;Right=chr6:54972664-54973081+;Distance=327;DiscordantMatePairAlignments=29;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6149594 (chr6:54972322-54972649);Frequency=1.00
chr6	CG	SV	54972337	54972855	29	+	.	ID=3250;Type=deletion;Left=chr6:54972337-54972855;Right=chr6:54972664-54973081
chr6	CG	SV	54972664	54973081	29	+	.	ID=3250;Type=deletion;Left=chr6:54972337-54972855;Right=chr6:54972664-54973081
chr6	CG	SV	57392870	57397663	201	.	.	ID=3247;Type=deletion;Left=chr6:57392870-57393304+;Right=chr6:57397315-57397663+;Distance=4445;DiscordantMatePairAlignments=201;LeftRepeat=;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs72273072 (chr6:57392872-57397315);Frequency=1.00
chr6	CG	SV	57392870	57393304	201	+	.	ID=3247;Type=deletion;Left=chr6:57392870-57393304;Right=chr6:57397315-57397663
chr6	CG	SV	57397315	57397663	201	+	.	ID=3247;Type=deletion;Left=chr6:57392870-57393304;Right=chr6:57397315-57397663
chr6	CG	SV	57405149	57409705	105	.	.	ID=3246;Type=deletion;Left=chr6:57405149-57405554+;Right=chr6:57409205-57409705+;Distance=4056;DiscordantMatePairAlignments=105;LeftRepeat=;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=;Frequency=1.00
chr6	CG	SV	57405149	57405554	105	+	.	ID=3246;Type=deletion;Left=chr6:57405149-57405554;Right=chr6:57409205-57409705
chr6	CG	SV	57409205	57409705	105	+	.	ID=3246;Type=deletion;Left=chr6:57405149-57405554;Right=chr6:57409205-57409705
chr6	CG	SV	57531030	57537549	382	.	.	ID=3245;Type=deletion;Left=chr6:57531030-57531502+;Right=chr6:57537082-57537549+;Distance=6052;DiscordantMatePairAlignments=382;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs68023605 (chr6:57531027-57537079);Frequency=1.00
chr6	CG	SV	57531030	57531502	382	+	.	ID=3245;Type=deletion;Left=chr6:57531030-57531502;Right=chr6:57537082-57537549
chr6	CG	SV	57537082	57537549	382	+	.	ID=3245;Type=deletion;Left=chr6:57531030-57531502;Right=chr6:57537082-57537549
chr6	CG	SV	57586112	57587233	265	.	.	ID=3244;Type=deletion;Left=chr6:57586112-57586536+;Right=chr6:57586819-57587233+;Distance=707;DiscordantMatePairAlignments=265;LeftRepeat=L1ME1:LINE:L1;RightRepeat=L1ME1:LINE:L1;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs72194487 (chr6:57586107-57586814);Frequency=1.00
chr6	CG	SV	57586112	57586536	265	+	.	ID=3244;Type=deletion;Left=chr6:57586112-57586536;Right=chr6:57586819-57587233
chr6	CG	SV	57586819	57587233	265	+	.	ID=3244;Type=deletion;Left=chr6:57586112-57586536;Right=chr6:57586819-57587233
chr6	CG	SV	57691648	57698609	20	.	.	ID=3242;Type=deletion;Left=chr6:57691648-57692080+;Right=chr6:57698241-57698609+;Distance=6593;DiscordantMatePairAlignments=20;LeftRepeat=(TTTTTA)n:Simple_repeat:Simple_repeat;RightRepeat=Charlie5:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs66514956 (chr6:57691631-57698224);Frequency=1.00
chr6	CG	SV	57691648	57692080	20	+	.	ID=3242;Type=deletion;Left=chr6:57691648-57692080;Right=chr6:57698241-57698609
chr6	CG	SV	57698241	57698609	20	+	.	ID=3242;Type=deletion;Left=chr6:57691648-57692080;Right=chr6:57698241-57698609
chr6	CG	SV	64724970	64726782	103	.	.	ID=3231;Type=deletion;Left=chr6:64724970-64725349+;Right=chr6:64726309-64726782+;Distance=1339;DiscordantMatePairAlignments=103;LeftRepeat=MER82:DNA:MER2_type;Self chain;RightRepeat=MLT1A1:LTR:MaLR;LeftGenes=NM_001142800:-;RightGenes=NM_001142800:-;XRef=rs71765003 (chr6:64724970-64726309);Frequency=0.65
chr6	CG	SV	64724970	64725349	103	+	.	ID=3231;Type=deletion;Left=chr6:64724970-64725349;Right=chr6:64726309-64726782
chr6	CG	SV	64726309	64726782	103	+	.	ID=3231;Type=deletion;Left=chr6:64724970-64725349;Right=chr6:64726309-64726782
chr6	CG	SV	66316753	66319169	349	.	.	ID=3229;Type=deletion;Left=chr6:66316753-66317233+;Right=chr6:66318747-66319169+;Distance=1994;DiscordantMatePairAlignments=349;LeftRepeat=;RightRepeat=L1HS:LINE:L1;LeftGenes=NM_001142800:-;NM_001142801:-;NM_198283:-;RightGenes=NM_001142800:-;NM_001142801:-;NM_198283:-;XRef=rs67189152 (chr6:66316760-66318754);Frequency=1.00
chr6	CG	SV	66316753	66317233	349	+	.	ID=3229;Type=deletion;Left=chr6:66316753-66317233;Right=chr6:66318747-66319169
chr6	CG	SV	66318747	66319169	349	+	.	ID=3229;Type=deletion;Left=chr6:66316753-66317233;Right=chr6:66318747-66319169
chr6	CG	SV	67291996	67292666	17	.	.	ID=3228;Type=deletion;Left=chr6:67291996-67292411+;Right=chr6:67292339-67292666+;Distance=343;DiscordantMatePairAlignments=17;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70976669 (chr6:67291983-67292326);Frequency=0.53
chr6	CG	SV	67291996	67292411	17	+	.	ID=3228;Type=deletion;Left=chr6:67291996-67292411;Right=chr6:67292339-67292666
chr6	CG	SV	67292339	67292666	17	+	.	ID=3228;Type=deletion;Left=chr6:67291996-67292411;Right=chr6:67292339-67292666
chr6	CG	SV	68158254	68169291	87	.	.	ID=3227;Type=deletion;Left=chr6:68158254-68158625+;Right=chr6:68168889-68169291+;Distance=10635;DiscordantMatePairAlignments=87;LeftRepeat=;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	68158254	68158625	87	+	.	ID=3227;Type=deletion;Left=chr6:68158254-68158625;Right=chr6:68168889-68169291
chr6	CG	SV	68168889	68169291	87	+	.	ID=3227;Type=deletion;Left=chr6:68158254-68158625;Right=chr6:68168889-68169291
chr6	CG	SV	69198887	69200221	202	.	.	ID=3226;Type=deletion;Left=chr6:69198887-69199375+;Right=chr6:69199830-69200221+;Distance=943;DiscordantMatePairAlignments=202;LeftRepeat=;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr6	CG	SV	69198887	69199375	202	+	.	ID=3226;Type=deletion;Left=chr6:69198887-69199375;Right=chr6:69199830-69200221
chr6	CG	SV	69199830	69200221	202	+	.	ID=3226;Type=deletion;Left=chr6:69198887-69199375;Right=chr6:69199830-69200221
chr6	CG	SV	72628163	72628902	13	.	.	ID=3225;Type=deletion;Left=chr6:72628163-72628658+;Right=chr6:72628484-72628902+;Distance=321;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=L1MC3:LINE:L1;LeftGenes=;RightGenes=;XRef=rs70976676 (chr6:72628163-72628484);Frequency=0.94
chr6	CG	SV	72628163	72628658	13	+	.	ID=3225;Type=deletion;Left=chr6:72628163-72628658;Right=chr6:72628484-72628902
chr6	CG	SV	72628484	72628902	13	+	.	ID=3225;Type=deletion;Left=chr6:72628163-72628658;Right=chr6:72628484-72628902
chr6	CG	SV	74648790	74659602	63	.	.	ID=3222;Type=deletion;Left=chr6:74648790-74649246+;Right=chr6:74659169-74659602+;Distance=10379;DiscordantMatePairAlignments=63;LeftRepeat=;RightRepeat=MSTA:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr6	CG	SV	74648790	74649246	63	+	.	ID=3222;Type=deletion;Left=chr6:74648790-74649246;Right=chr6:74659169-74659602
chr6	CG	SV	74659169	74659602	63	+	.	ID=3222;Type=deletion;Left=chr6:74648790-74649246;Right=chr6:74659169-74659602
chr6	CG	SV	74922161	74923753	194	.	.	ID=3221;Type=deletion;Left=chr6:74922161-74922602+;Right=chr6:74923312-74923753+;Distance=1151;DiscordantMatePairAlignments=194;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70976682 (chr6:74922168-74923319);Frequency=0.94
chr6	CG	SV	74922161	74922602	194	+	.	ID=3221;Type=deletion;Left=chr6:74922161-74922602;Right=chr6:74923312-74923753
chr6	CG	SV	74923312	74923753	194	+	.	ID=3221;Type=deletion;Left=chr6:74922161-74922602;Right=chr6:74923312-74923753
chr6	CG	SV	77154216	77159848	62	.	.	ID=3218;Type=deletion;Left=chr6:77154216-77154735+;Right=chr6:77159365-77159848+;Distance=5149;DiscordantMatePairAlignments=62;LeftRepeat=L1MA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67536422 (chr6:77154212-77159361);Frequency=0.71
chr6	CG	SV	77154216	77154735	62	+	.	ID=3218;Type=deletion;Left=chr6:77154216-77154735;Right=chr6:77159365-77159848
chr6	CG	SV	77159365	77159848	62	+	.	ID=3218;Type=deletion;Left=chr6:77154216-77154735;Right=chr6:77159365-77159848
chr6	CG	SV	81112919	81115181	118	.	.	ID=3215;Type=deletion;Left=chr6:81112919-81113356+;Right=chr6:81114601-81115181+;Distance=1682;DiscordantMatePairAlignments=118;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	81112919	81113356	118	+	.	ID=3215;Type=deletion;Left=chr6:81112919-81113356;Right=chr6:81114601-81115181
chr6	CG	SV	81114601	81115181	118	+	.	ID=3215;Type=deletion;Left=chr6:81112919-81113356;Right=chr6:81114601-81115181
chr6	CG	SV	85374864	85381364	190	.	.	ID=3213;Type=deletion;Left=chr6:85374864-85375344+;Right=chr6:85380941-85381364+;Distance=6077;DiscordantMatePairAlignments=190;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70976689 (chr6:85374870-85380947);Frequency=1.00
chr6	CG	SV	85374864	85375344	190	+	.	ID=3213;Type=deletion;Left=chr6:85374864-85375344;Right=chr6:85380941-85381364
chr6	CG	SV	85380941	85381364	190	+	.	ID=3213;Type=deletion;Left=chr6:85374864-85375344;Right=chr6:85380941-85381364
chr6	CG	SV	89980353	89980661	89	.	.	ID=4549;Type=probable-inversion;Left=chr6:89980353-89980894+;Right=chr6:89980353-89980661-;Distance=308;DiscordantMatePairAlignments=89;LeftRepeat=L1M3:LINE:L1;RightRepeat=L1MA7:LINE:L1;LeftGenes=NM_002042:-;RightGenes=NM_002042:-;XRef=;Frequency=1.00
chr6	CG	SV	89980353	89980894	89	+	.	ID=4549;Type=probable-inversion;Left=chr6:89980353-89980894;Right=chr6:89980353-89980661
chr6	CG	SV	89980353	89980661	89	+	.	ID=4549;Type=probable-inversion;Left=chr6:89980353-89980894;Right=chr6:89980353-89980661
chr6	CG	SV	92967388	92968194	17	.	.	ID=3211;Type=deletion;Left=chr6:92967388-92967829+;Right=chr6:92967711-92968194+;Distance=323;DiscordantMatePairAlignments=17;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=LTR8A-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr6	CG	SV	92967388	92967829	17	+	.	ID=3211;Type=deletion;Left=chr6:92967388-92967829;Right=chr6:92967711-92968194
chr6	CG	SV	92967711	92968194	17	+	.	ID=3211;Type=deletion;Left=chr6:92967388-92967829;Right=chr6:92967711-92968194
chr6	CG	SV	94797795	94798041	43	.	.	ID=4548;Type=probable-inversion;Left=chr6:94797795-94798052+;Right=chr6:94797793-94798041-;Distance=246;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr6	CG	SV	94797795	94798052	43	+	.	ID=4548;Type=probable-inversion;Left=chr6:94797795-94798052;Right=chr6:94797793-94798041
chr6	CG	SV	94797793	94798041	43	+	.	ID=4548;Type=probable-inversion;Left=chr6:94797795-94798052;Right=chr6:94797793-94798041
chr6	CG	SV	95250045	95251492	121	.	.	ID=3210;Type=deletion;Left=chr6:95250045-95250451+;Right=chr6:95251059-95251492+;Distance=1014;DiscordantMatePairAlignments=121;LeftRepeat=L1M5:LINE:L1;RightRepeat=L1MEc:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67517600 (chr6:95250045-95251059);Frequency=0.76
chr6	CG	SV	95250045	95250451	121	+	.	ID=3210;Type=deletion;Left=chr6:95250045-95250451;Right=chr6:95251059-95251492
chr6	CG	SV	95251059	95251492	121	+	.	ID=3210;Type=deletion;Left=chr6:95250045-95250451;Right=chr6:95251059-95251492
chr6	CG	SV	96959775	96960342	15	.	.	ID=3209;Type=deletion;Left=chr6:96959775-96960239+;Right=chr6:96960106-96960342+;Distance=331;DiscordantMatePairAlignments=15;LeftRepeat=HUERS-P1:LTR:ERV1;RightRepeat=HUERS-P1:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	96959775	96960239	15	+	.	ID=3209;Type=deletion;Left=chr6:96959775-96960239;Right=chr6:96960106-96960342
chr6	CG	SV	96960106	96960342	15	+	.	ID=3209;Type=deletion;Left=chr6:96959775-96960239;Right=chr6:96960106-96960342
chr6	CG	SV	100141222	100142445	148	.	.	ID=3208;Type=deletion;Left=chr6:100141222-100141672+;Right=chr6:100142042-100142445+;Distance=820;DiscordantMatePairAlignments=148;LeftRepeat=Tigger1:DNA:MER2_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67162792 (chr6:100141227-100142042);Frequency=1.00
chr6	CG	SV	100141222	100141672	148	+	.	ID=3208;Type=deletion;Left=chr6:100141222-100141672;Right=chr6:100142042-100142445
chr6	CG	SV	100142042	100142445	148	+	.	ID=3208;Type=deletion;Left=chr6:100141222-100141672;Right=chr6:100142042-100142445
chr6	CG	SV	103844157	103869904	22	.	.	ID=3207;Type=deletion;Left=chr6:103844157-103844396+;Right=chr6:103869582-103869904+;Distance=25425;DiscordantMatePairAlignments=22;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1PA7:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr6	CG	SV	103844157	103844396	22	+	.	ID=3207;Type=deletion;Left=chr6:103844157-103844396;Right=chr6:103869582-103869904
chr6	CG	SV	103869582	103869904	22	+	.	ID=3207;Type=deletion;Left=chr6:103844157-103844396;Right=chr6:103869582-103869904
chr6	CG	SV	105674546	105675345	32	.	.	ID=3206;Type=deletion;Left=chr6:105674546-105675102+;Right=chr6:105674881-105675345+;Distance=335;DiscordantMatePairAlignments=32;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_007073:-;NM_147147:-;RightGenes=NM_007073:-;NM_147147:-;XRef=rs66485930 (chr6:105674546-105674881);Frequency=1.00
chr6	CG	SV	105674546	105675102	32	+	.	ID=3206;Type=deletion;Left=chr6:105674546-105675102;Right=chr6:105674881-105675345
chr6	CG	SV	105674881	105675345	32	+	.	ID=3206;Type=deletion;Left=chr6:105674546-105675102;Right=chr6:105674881-105675345
chr6	CG	SV	107035538	107036221	10	.	.	ID=3205;Type=deletion;Left=chr6:107035538-107035854+;Right=chr6:107035854-107036221+;Distance=316;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs33987141 (chr6:107035525-107035841);Frequency=0.18
chr6	CG	SV	107035538	107035854	10	+	.	ID=3205;Type=deletion;Left=chr6:107035538-107035854;Right=chr6:107035854-107036221
chr6	CG	SV	107035854	107036221	10	+	.	ID=3205;Type=deletion;Left=chr6:107035538-107035854;Right=chr6:107035854-107036221
chr6	CG	SV	107090329	107090944	16	.	.	ID=3203;Type=complex;Left=chr6:107090329-107090774+;Right=chr6:107090648-107090944+;Distance=319;DiscordantMatePairAlignments=16;LeftRepeat=L1MC4:LINE:L1;Tandem T;RightRepeat=L1MC4:LINE:L1;LeftGenes=NM_001624:+;RightGenes=NM_001624:+;XRef=rs72069284 (chr6:107090315-107090634);Frequency=1.00
chr6	CG	SV	107090329	107090774	16	+	.	ID=3203;Type=complex;Left=chr6:107090329-107090774;Right=chr6:107090648-107090944
chr6	CG	SV	107090648	107090944	16	+	.	ID=3203;Type=complex;Left=chr6:107090329-107090774;Right=chr6:107090648-107090944
chr6	CG	SV	107090329	107091075	24	.	.	ID=3204;Type=complex;Left=chr6:107090329-107090704+;Right=chr6:107090648-107091075+;Distance=319;DiscordantMatePairAlignments=24;LeftRepeat=L1MC4:LINE:L1;Tandem T;RightRepeat=L1MC4:LINE:L1;LeftGenes=NM_001624:+;RightGenes=NM_001624:+;XRef=rs67203523 (chr6:107090329-107090648);Frequency=1.00
chr6	CG	SV	107090329	107090704	24	+	.	ID=3204;Type=complex;Left=chr6:107090329-107090704;Right=chr6:107090648-107091075
chr6	CG	SV	107090648	107091075	24	+	.	ID=3204;Type=complex;Left=chr6:107090329-107090704;Right=chr6:107090648-107091075
chr6	CG	SV	108138035	108139563	94	.	.	ID=3202;Type=deletion;Left=chr6:108138035-108138525+;Right=chr6:108139095-108139563+;Distance=1060;DiscordantMatePairAlignments=94;LeftRepeat=;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_198081:-;RightGenes=NM_198081:-;XRef=rs66561424 (chr6:108138035-108139079);Frequency=1.00
chr6	CG	SV	108138035	108138525	94	+	.	ID=3202;Type=deletion;Left=chr6:108138035-108138525;Right=chr6:108139095-108139563
chr6	CG	SV	108139095	108139563	94	+	.	ID=3202;Type=deletion;Left=chr6:108138035-108138525;Right=chr6:108139095-108139563
chr6	CG	SV	113534763	113538641	12	.	.	ID=3199;Type=deletion;Left=chr6:113534763-113535114+;Right=chr6:113538281-113538641+;Distance=3518;DiscordantMatePairAlignments=12;LeftRepeat=L1PA6:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	113534763	113535114	12	+	.	ID=3199;Type=deletion;Left=chr6:113534763-113535114;Right=chr6:113538281-113538641
chr6	CG	SV	113538281	113538641	12	+	.	ID=3199;Type=deletion;Left=chr6:113534763-113535114;Right=chr6:113538281-113538641
chr6	CG	SV	113807653	113810220	75	.	.	ID=3198;Type=deletion;Left=chr6:113807653-113808065+;Right=chr6:113809812-113810220+;Distance=2159;DiscordantMatePairAlignments=75;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	113807653	113808065	75	+	.	ID=3198;Type=deletion;Left=chr6:113807653-113808065;Right=chr6:113809812-113810220
chr6	CG	SV	113809812	113810220	75	+	.	ID=3198;Type=deletion;Left=chr6:113807653-113808065;Right=chr6:113809812-113810220
chr6	CG	SV	116857523	116858203	10	.	.	ID=3196;Type=deletion;Left=chr6:116857523-116858015+;Right=chr6:116857842-116858203+;Distance=319;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_001080976:+;NM_013352:+;RightGenes=NM_001080976:+;NM_013352:+;XRef=rs6149767 (chr6:116857506-116857825);Frequency=0.88
chr6	CG	SV	116857523	116858015	10	+	.	ID=3196;Type=deletion;Left=chr6:116857523-116858015;Right=chr6:116857842-116858203
chr6	CG	SV	116857842	116858203	10	+	.	ID=3196;Type=deletion;Left=chr6:116857523-116858015;Right=chr6:116857842-116858203
chr6	CG	SV	119303336	119304019	47	.	.	ID=1207;Type=tandem-duplication;Left=chr6:119303336-119303691-;Right=chr6:119303671-119304019-;Distance=328;DiscordantMatePairAlignments=47;LeftRepeat=L1M1:LINE:L1;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	119303336	119303691	47	-	.	ID=1207;Type=tandem-duplication;Left=chr6:119303336-119303691;Right=chr6:119303671-119304019
chr6	CG	SV	119303671	119304019	47	-	.	ID=1207;Type=tandem-duplication;Left=chr6:119303336-119303691;Right=chr6:119303671-119304019
chr6	CG	SV	121361005	121361712	19	.	.	ID=3194;Type=deletion;Left=chr6:121361005-121361439+;Right=chr6:121361329-121361712+;Distance=324;DiscordantMatePairAlignments=19;LeftRepeat=L1M4:LINE:L1;Tandem T;RightRepeat=L1M4:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67579260 (chr6:121360991-121361315);Frequency=0.94
chr6	CG	SV	121361005	121361439	19	+	.	ID=3194;Type=deletion;Left=chr6:121361005-121361439;Right=chr6:121361329-121361712
chr6	CG	SV	121361329	121361712	19	+	.	ID=3194;Type=deletion;Left=chr6:121361005-121361439;Right=chr6:121361329-121361712
chr6	CG	SV	123556769	123557554	27	.	.	ID=3190;Type=deletion;Left=chr6:123556769-123557101+;Right=chr6:123557084-123557554+;Distance=315;DiscordantMatePairAlignments=27;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67579876 (chr6:123556769-123557084);Frequency=1.00
chr6	CG	SV	123556769	123557101	27	+	.	ID=3190;Type=deletion;Left=chr6:123556769-123557101;Right=chr6:123557084-123557554
chr6	CG	SV	123557084	123557554	27	+	.	ID=3190;Type=deletion;Left=chr6:123556769-123557101;Right=chr6:123557084-123557554
chr6	CG	SV	124540613	124541150	14	.	.	ID=3189;Type=deletion;Left=chr6:124540613-124541072+;Right=chr6:124540936-124541150+;Distance=323;DiscordantMatePairAlignments=14;LeftRepeat=MLT1A0:LTR:MaLR;RightRepeat=MLT1A0:LTR:MaLR;LeftGenes=NM_001040214:+;RightGenes=NM_001040214:+;XRef=;Frequency=1.00
chr6	CG	SV	124540613	124541072	14	+	.	ID=3189;Type=deletion;Left=chr6:124540613-124541072;Right=chr6:124540936-124541150
chr6	CG	SV	124540936	124541150	14	+	.	ID=3189;Type=deletion;Left=chr6:124540613-124541072;Right=chr6:124540936-124541150
chr6	CG	SV	125750464	125753455	76	.	.	ID=3188;Type=deletion;Left=chr6:125750464-125750795+;Right=chr6:125753067-125753455+;Distance=2603;DiscordantMatePairAlignments=76;LeftRepeat=L1MDa:LINE:L1;Tandem period 11;Tandem period 8;RightRepeat=L1MDa:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr6	CG	SV	125750464	125750795	76	+	.	ID=3188;Type=deletion;Left=chr6:125750464-125750795;Right=chr6:125753067-125753455
chr6	CG	SV	125753067	125753455	76	+	.	ID=3188;Type=deletion;Left=chr6:125750464-125750795;Right=chr6:125753067-125753455
chr6	CG	SV	129361213	129367721	386	.	.	ID=3187;Type=deletion;Left=chr6:129361213-129361770+;Right=chr6:129367272-129367721+;Distance=6059;DiscordantMatePairAlignments=386;LeftRepeat=;RightRepeat=;LeftGenes=NM_000426:+;NM_001079823:+;RightGenes=NM_000426:+;NM_001079823:+;XRef=rs71701877 (chr6:129361208-129367267);Frequency=0.41
chr6	CG	SV	129361213	129361770	386	+	.	ID=3187;Type=deletion;Left=chr6:129361213-129361770;Right=chr6:129367272-129367721
chr6	CG	SV	129367272	129367721	386	+	.	ID=3187;Type=deletion;Left=chr6:129361213-129361770;Right=chr6:129367272-129367721
chr6	CG	SV	129778782	129779598	24	.	.	ID=3186;Type=deletion;Left=chr6:129778782-129779290+;Right=chr6:129779096-129779598+;Distance=314;DiscordantMatePairAlignments=24;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_000426:+;NM_001079823:+;RightGenes=NM_000426:+;NM_001079823:+;XRef=rs6149806 (chr6:129778763-129779077);Frequency=0.71
chr6	CG	SV	129778782	129779290	24	+	.	ID=3186;Type=deletion;Left=chr6:129778782-129779290;Right=chr6:129779096-129779598
chr6	CG	SV	129779096	129779598	24	+	.	ID=3186;Type=deletion;Left=chr6:129778782-129779290;Right=chr6:129779096-129779598
chr6	CG	SV	131926364	131927084	58	.	.	ID=345;Type=distal-duplication;Left=chr6:131926364-131926491-;Right=chr6:131926654-131927084+;Distance=163;DiscordantMatePairAlignments=58;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	131926364	131926491	58	-	.	ID=345;Type=distal-duplication;Left=chr6:131926364-131926491;Right=chr6:131926654-131927084
chr6	CG	SV	131926654	131927084	58	-	.	ID=345;Type=distal-duplication;Left=chr6:131926364-131926491;Right=chr6:131926654-131927084
chr6	CG	SV	131926532	131926613	29	.	.	ID=4545;Type=distal-duplication;Left=chr6:131926532-131926944+;Right=chr6:131926531-131926613-;Distance=81;DiscordantMatePairAlignments=29;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	131926532	131926944	29	+	.	ID=4545;Type=distal-duplication;Left=chr6:131926532-131926944;Right=chr6:131926531-131926613
chr6	CG	SV	131926531	131926613	29	+	.	ID=4545;Type=distal-duplication;Left=chr6:131926532-131926944;Right=chr6:131926531-131926613
chr6	CG	SV	133383522	133390017	257	.	.	ID=3185;Type=deletion;Left=chr6:133383522-133383942+;Right=chr6:133389587-133390017+;Distance=6065;DiscordantMatePairAlignments=257;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70979714 (chr6:133383513-133389578);Frequency=0.82
chr6	CG	SV	133383522	133383942	257	+	.	ID=3185;Type=deletion;Left=chr6:133383522-133383942;Right=chr6:133389587-133390017
chr6	CG	SV	133389587	133390017	257	+	.	ID=3185;Type=deletion;Left=chr6:133383522-133383942;Right=chr6:133389587-133390017
chr6	CG	SV	133991366	133992656	115	.	.	ID=3184;Type=deletion;Left=chr6:133991366-133991793+;Right=chr6:133992232-133992656+;Distance=866;DiscordantMatePairAlignments=115;LeftRepeat=ERVL-C1:LTR:ERVL;RightRepeat=ERVL-C1:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr6	CG	SV	133991366	133991793	115	+	.	ID=3184;Type=deletion;Left=chr6:133991366-133991793;Right=chr6:133992232-133992656
chr6	CG	SV	133992232	133992656	115	+	.	ID=3184;Type=deletion;Left=chr6:133991366-133991793;Right=chr6:133992232-133992656
chr6	CG	SV	134104632	134105348	26	.	.	ID=3183;Type=deletion;Left=chr6:134104632-134104984+;Right=chr6:134105112-134105348+;Distance=480;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	134104632	134104984	26	+	.	ID=3183;Type=deletion;Left=chr6:134104632-134104984;Right=chr6:134105112-134105348
chr6	CG	SV	134105112	134105348	26	+	.	ID=3183;Type=deletion;Left=chr6:134104632-134104984;Right=chr6:134105112-134105348
chr6	CG	SV	134310673	134312009	371	.	.	ID=3179;Type=deletion;Left=chr6:134310673-134311269+;Right=chr6:134311421-134312009+;Distance=748;DiscordantMatePairAlignments=371;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66832735 (chr6:134310669-134311417);Frequency=1.00
chr6	CG	SV	134310673	134311269	371	+	.	ID=3179;Type=deletion;Left=chr6:134310673-134311269;Right=chr6:134311421-134312009
chr6	CG	SV	134311421	134312009	371	+	.	ID=3179;Type=deletion;Left=chr6:134310673-134311269;Right=chr6:134311421-134312009
chr6	CG	SV	134859054	134859801	19	.	.	ID=3177;Type=deletion;Left=chr6:134859054-134859586+;Right=chr6:134859371-134859801+;Distance=317;DiscordantMatePairAlignments=19;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66491214 (chr6:134859038-134859355);Frequency=1.00
chr6	CG	SV	134859054	134859586	19	+	.	ID=3177;Type=deletion;Left=chr6:134859054-134859586;Right=chr6:134859371-134859801
chr6	CG	SV	134859371	134859801	19	+	.	ID=3177;Type=deletion;Left=chr6:134859054-134859586;Right=chr6:134859371-134859801
chr6	CG	SV	137355387	137356380	82	.	.	ID=3165;Type=deletion;Left=chr6:137355387-137355870+;Right=chr6:137355880-137356380+;Distance=493;DiscordantMatePairAlignments=82;LeftRepeat=L1MC:LINE:L1;RightRepeat=;LeftGenes=NR_027994:-;RightGenes=NR_027994:-;XRef=rs67777601 (chr6:137355386-137355879);Frequency=1.00
chr6	CG	SV	137355387	137355870	82	+	.	ID=3165;Type=deletion;Left=chr6:137355387-137355870;Right=chr6:137355880-137356380
chr6	CG	SV	137355880	137356380	82	+	.	ID=3165;Type=deletion;Left=chr6:137355387-137355870;Right=chr6:137355880-137356380
chr6	CG	SV	138989441	138990159	24	.	.	ID=3164;Type=deletion;Left=chr6:138989441-138989869+;Right=chr6:138989761-138990159+;Distance=320;DiscordantMatePairAlignments=24;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr6	CG	SV	138989441	138989869	24	+	.	ID=3164;Type=deletion;Left=chr6:138989441-138989869;Right=chr6:138989761-138990159
chr6	CG	SV	138989761	138990159	24	+	.	ID=3164;Type=deletion;Left=chr6:138989441-138989869;Right=chr6:138989761-138990159
chr6	CG	SV	146250543	146255872	11	.	.	ID=3161;Type=deletion;Left=chr6:146250543-146250885+;Right=chr6:146255759-146255872+;Distance=5216;DiscordantMatePairAlignments=11;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_001042683:-;NM_173082:-;RightGenes=NM_001042683:-;NM_173082:-;XRef=;Frequency=0.00
chr6	CG	SV	146250543	146250885	11	+	.	ID=3161;Type=deletion;Left=chr6:146250543-146250885;Right=chr6:146255759-146255872
chr6	CG	SV	146255759	146255872	11	+	.	ID=3161;Type=deletion;Left=chr6:146250543-146250885;Right=chr6:146255759-146255872
chr6	CG	SV	151527808	151529151	23	.	.	ID=3160;Type=deletion;Left=chr6:151527808-151528276+;Right=chr6:151528878-151529151+;Distance=1070;DiscordantMatePairAlignments=23;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr6	CG	SV	151527808	151528276	23	+	.	ID=3160;Type=deletion;Left=chr6:151527808-151528276;Right=chr6:151528878-151529151
chr6	CG	SV	151528878	151529151	23	+	.	ID=3160;Type=deletion;Left=chr6:151527808-151528276;Right=chr6:151528878-151529151
chr6	CG	SV	153071683	153075933	127	.	.	ID=3159;Type=deletion;Left=chr6:153071683-153072021+;Right=chr6:153075501-153075933+;Distance=3818;DiscordantMatePairAlignments=127;LeftRepeat=L1MEb:LINE:L1;RightRepeat=L1MEb:LINE:L1;LeftGenes=NM_025107:+;RightGenes=NM_025107:+;XRef=;Frequency=1.00
chr6	CG	SV	153071683	153072021	127	+	.	ID=3159;Type=deletion;Left=chr6:153071683-153072021;Right=chr6:153075501-153075933
chr6	CG	SV	153075501	153075933	127	+	.	ID=3159;Type=deletion;Left=chr6:153071683-153072021;Right=chr6:153075501-153075933
chr6	CG	SV	154488622	154489303	13	.	.	ID=3157;Type=complex;Left=chr6:154488622-154489098+;Right=chr6:154488944-154489303+;Distance=322;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_001008503:+;RightGenes=NM_001008503:+;XRef=rs10525587 (chr6:154488607-154488929);Frequency=1.00
chr6	CG	SV	154488622	154489098	13	+	.	ID=3157;Type=complex;Left=chr6:154488622-154489098;Right=chr6:154488944-154489303
chr6	CG	SV	154488944	154489303	13	+	.	ID=3157;Type=complex;Left=chr6:154488622-154489098;Right=chr6:154488944-154489303
chr6	CG	SV	154488622	154489513	29	.	.	ID=3158;Type=complex;Left=chr6:154488622-154488981+;Right=chr6:154488944-154489513+;Distance=322;DiscordantMatePairAlignments=29;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_001008503:+;RightGenes=NM_001008503:+;XRef=rs70979783 (chr6:154488622-154488944);Frequency=1.00
chr6	CG	SV	154488622	154488981	29	+	.	ID=3158;Type=complex;Left=chr6:154488622-154488981;Right=chr6:154488944-154489513
chr6	CG	SV	154488944	154489513	29	+	.	ID=3158;Type=complex;Left=chr6:154488622-154488981;Right=chr6:154488944-154489513
chr6	CG	SV	158468270	158469578	143	.	.	ID=3155;Type=deletion;Left=chr6:158468270-158468656+;Right=chr6:158469070-158469578+;Distance=800;DiscordantMatePairAlignments=143;LeftRepeat=;RightRepeat=;LeftGenes=NM_032861:-;RightGenes=NM_032861:-;XRef=rs67440464 (chr6:158468254-158469054);Frequency=1.00
chr6	CG	SV	158468270	158468656	143	+	.	ID=3155;Type=deletion;Left=chr6:158468270-158468656;Right=chr6:158469070-158469578
chr6	CG	SV	158469070	158469578	143	+	.	ID=3155;Type=deletion;Left=chr6:158468270-158468656;Right=chr6:158469070-158469578
chr6	CG	SV	158796064	158796904	12	.	.	ID=3153;Type=deletion;Left=chr6:158796064-158796163+;Right=chr6:158796392-158796904+;Distance=328;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=NM_001007466:+;NM_020245:+;RightGenes=NM_001007466:+;NM_020245:+;XRef=rs71934336 (chr6:158796064-158796392);Frequency=0.82
chr6	CG	SV	158796064	158796163	12	+	.	ID=3153;Type=deletion;Left=chr6:158796064-158796163;Right=chr6:158796392-158796904
chr6	CG	SV	158796392	158796904	12	+	.	ID=3153;Type=deletion;Left=chr6:158796064-158796163;Right=chr6:158796392-158796904
chr6	CG	SV	159042301	159042558	15	.	.	ID=1205;Type=tandem-duplication;Left=chr6:159042301-159042424-;Right=chr6:159042437-159042558-;Distance=134;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem period 26;Tandem period 67;RightRepeat=Self chain;Tandem period 67;LeftGenes=NM_001009991:+;RightGenes=NM_001009991:+;XRef=;Frequency=0.59
chr6	CG	SV	159042301	159042424	15	-	.	ID=1205;Type=tandem-duplication;Left=chr6:159042301-159042424;Right=chr6:159042437-159042558
chr6	CG	SV	159042437	159042558	15	-	.	ID=1205;Type=tandem-duplication;Left=chr6:159042301-159042424;Right=chr6:159042437-159042558
chr6	CG	SV	159046025	159046709	41	.	.	ID=3152;Type=deletion;Left=chr6:159046025-159046457+;Right=chr6:159046437-159046709+;Distance=412;DiscordantMatePairAlignments=41;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;Tandem period 51;LeftGenes=NM_001009991:+;RightGenes=NM_001009991:+;XRef=;Frequency=0.24
chr6	CG	SV	159046025	159046457	41	+	.	ID=3152;Type=deletion;Left=chr6:159046025-159046457;Right=chr6:159046437-159046709
chr6	CG	SV	159046437	159046709	41	+	.	ID=3152;Type=deletion;Left=chr6:159046025-159046457;Right=chr6:159046437-159046709
chr6	CG	SV	159572115	159572862	21	.	.	ID=3151;Type=deletion;Left=chr6:159572115-159572547+;Right=chr6:159572428-159572862+;Distance=313;DiscordantMatePairAlignments=21;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_032532:+;RightGenes=NM_032532:+;XRef=rs71858783 (chr6:159572099-159572412);Frequency=1.00
chr6	CG	SV	159572115	159572547	21	+	.	ID=3151;Type=deletion;Left=chr6:159572115-159572547;Right=chr6:159572428-159572862
chr6	CG	SV	159572428	159572862	21	+	.	ID=3151;Type=deletion;Left=chr6:159572115-159572547;Right=chr6:159572428-159572862
chr6	CG	SV	159586768	159587535	23	.	.	ID=3150;Type=deletion;Left=chr6:159586768-159587321+;Right=chr6:159587091-159587535+;Distance=323;DiscordantMatePairAlignments=23;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_032532:+;RightGenes=NM_032532:+;XRef=rs67337626 (chr6:159586751-159587074);Frequency=1.00
chr6	CG	SV	159586768	159587321	23	+	.	ID=3150;Type=deletion;Left=chr6:159586768-159587321;Right=chr6:159587091-159587535
chr6	CG	SV	159587091	159587535	23	+	.	ID=3150;Type=deletion;Left=chr6:159586768-159587321;Right=chr6:159587091-159587535
chr6	CG	SV	160797373	160876573	22	.	.	ID=1204;Type=tandem-duplication;Left=chr6:160797373-160797828-;Right=chr6:160876500-160876573-;Distance=78745;DiscordantMatePairAlignments=22;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 9;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGATGG;LeftGenes=;RightGenes=NM_005577:-;XRef=;Frequency=0.94
chr6	CG	SV	160797373	160797828	22	-	.	ID=1204;Type=tandem-duplication;Left=chr6:160797373-160797828;Right=chr6:160876500-160876573
chr6	CG	SV	160876500	160876573	22	-	.	ID=1204;Type=tandem-duplication;Left=chr6:160797373-160797828;Right=chr6:160876500-160876573
chr6	CG	SV	165042348	165042624	38	-	.	ID=941;Type=complex;Left=chr6:165042348-165042624-;Right=chr19:54305688-54306117-;Distance=;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=FRAM:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	54305688	54306117	38	-	.	ID=941;Type=complex;Left=chr6:165042348-165042624-;Right=chr19:54305688-54306117-;Distance=;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=FRAM:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	165644659	165652529	31	.	.	ID=3147;Type=deletion;Left=chr6:165644659-165645093+;Right=chr6:165652125-165652529+;Distance=7466;DiscordantMatePairAlignments=31;LeftRepeat=LTR46:LTR:ERV1;RightRepeat=L1PA8:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72196192 (chr6:165644656-165652122);Frequency=0.88
chr6	CG	SV	165644659	165645093	31	+	.	ID=3147;Type=deletion;Left=chr6:165644659-165645093;Right=chr6:165652125-165652529
chr6	CG	SV	165652125	165652529	31	+	.	ID=3147;Type=deletion;Left=chr6:165644659-165645093;Right=chr6:165652125-165652529
chr6	CG	SV	166172879	166173465	15	.	.	ID=1203;Type=tandem-duplication;Left=chr6:166172879-166173161-;Right=chr6:166173269-166173465-;Distance=304;DiscordantMatePairAlignments=15;LeftRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;Tandem period 12;Tandem period 18;RightRepeat=C-rich:Low_complexity:Low_complexity;Tandem CATCCC;Tandem period 12;Tandem period 18;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr6	CG	SV	166172879	166173161	15	-	.	ID=1203;Type=tandem-duplication;Left=chr6:166172879-166173161;Right=chr6:166173269-166173465
chr6	CG	SV	166173269	166173465	15	-	.	ID=1203;Type=tandem-duplication;Left=chr6:166172879-166173161;Right=chr6:166173269-166173465
chr6	CG	SV	167408060	167410076	68	.	.	ID=3146;Type=deletion;Left=chr6:167408060-167408447+;Right=chr6:167409592-167410076+;Distance=1532;DiscordantMatePairAlignments=68;LeftRepeat=L1MEe:LINE:L1;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem CTTC;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	167408060	167408447	68	+	.	ID=3146;Type=deletion;Left=chr6:167408060-167408447;Right=chr6:167409592-167410076
chr6	CG	SV	167409592	167410076	68	+	.	ID=3146;Type=deletion;Left=chr6:167408060-167408447;Right=chr6:167409592-167410076
chr6	CG	SV	167794663	167795427	11	.	.	ID=1199;Type=tandem-duplication;Left=chr6:167794663-167794941-;Right=chr6:167795071-167795427-;Distance=486;DiscordantMatePairAlignments=11;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GT;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GT;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr6	CG	SV	167794663	167794941	11	-	.	ID=1199;Type=tandem-duplication;Left=chr6:167794663-167794941;Right=chr6:167795071-167795427
chr6	CG	SV	167795071	167795427	11	-	.	ID=1199;Type=tandem-duplication;Left=chr6:167794663-167794941;Right=chr6:167795071-167795427
chr6	CG	SV	168459845	168461853	54	.	.	ID=3144;Type=deletion;Left=chr6:168459845-168460150+;Right=chr6:168461676-168461853+;Distance=1831;DiscordantMatePairAlignments=54;LeftRepeat=Self chain;Tandem period 109;RightRepeat=Self chain;Tandem period 109;LeftGenes=NM_214462:-;RightGenes=NM_214462:-;XRef=rs71731358 (chr6:168459767-168461373);Frequency=0.71
chr6	CG	SV	168459845	168460150	54	+	.	ID=3144;Type=deletion;Left=chr6:168459845-168460150;Right=chr6:168461676-168461853
chr6	CG	SV	168461676	168461853	54	+	.	ID=3144;Type=deletion;Left=chr6:168459845-168460150;Right=chr6:168461676-168461853
chr6	CG	SV	168983731	168983915	10	.	.	ID=1197;Type=tandem-duplication;Left=chr6:168983731-168983816-;Right=chr6:168983826-168983915-;Distance=99;DiscordantMatePairAlignments=10;LeftRepeat=(GGATG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 19;RightRepeat=Self chain;Tandem period 19;Tandem period 20;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	168983731	168983816	10	-	.	ID=1197;Type=tandem-duplication;Left=chr6:168983731-168983816;Right=chr6:168983826-168983915
chr6	CG	SV	168983826	168983915	10	-	.	ID=1197;Type=tandem-duplication;Left=chr6:168983731-168983816;Right=chr6:168983826-168983915
chr6	CG	SV	169056266	169056416	11	.	.	ID=1196;Type=tandem-duplication;Left=chr6:169056266-169056342-;Right=chr6:169056340-169056416-;Distance=74;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	169056266	169056342	11	-	.	ID=1196;Type=tandem-duplication;Left=chr6:169056266-169056342;Right=chr6:169056340-169056416
chr6	CG	SV	169056340	169056416	11	-	.	ID=1196;Type=tandem-duplication;Left=chr6:169056266-169056342;Right=chr6:169056340-169056416
chr6	CG	SV	169951948	169952668	24	.	.	ID=3143;Type=deletion;Left=chr6:169951948-169952361+;Right=chr6:169952331-169952668+;Distance=383;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.25
chr6	CG	SV	169951948	169952361	24	+	.	ID=3143;Type=deletion;Left=chr6:169951948-169952361;Right=chr6:169952331-169952668
chr6	CG	SV	169952331	169952668	24	+	.	ID=3143;Type=deletion;Left=chr6:169951948-169952361;Right=chr6:169952331-169952668
chr6	CG	SV	169971021	169971662	11	.	.	ID=3142;Type=deletion;Left=chr6:169971021-169971493+;Right=chr6:169971374-169971662+;Distance=353;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 32;RightRepeat=Self chain;Tandem period 32;LeftGenes=;RightGenes=;XRef=rs67981709 (chr6:169970872-169971288);Frequency=0.35
chr6	CG	SV	169971021	169971493	11	+	.	ID=3142;Type=deletion;Left=chr6:169971021-169971493;Right=chr6:169971374-169971662
chr6	CG	SV	169971374	169971662	11	+	.	ID=3142;Type=deletion;Left=chr6:169971021-169971493;Right=chr6:169971374-169971662
chr6	CG	SV	170603648	170604099	54	.	.	ID=1195;Type=tandem-duplication;Left=chr6:170603648-170603837-;Right=chr6:170603846-170604099-;Distance=262;DiscordantMatePairAlignments=54;LeftRepeat=Self chain;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GT;Tandem GTGAGT;Tandem period 8;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr6	CG	SV	170603648	170603837	54	-	.	ID=1195;Type=tandem-duplication;Left=chr6:170603648-170603837;Right=chr6:170603846-170604099
chr6	CG	SV	170603846	170604099	54	-	.	ID=1195;Type=tandem-duplication;Left=chr6:170603648-170603837;Right=chr6:170603846-170604099
chr7	CG	SV	319368	321346	10	.	.	ID=3141;Type=deletion;Left=chr7:319368-319821+;Right=chr7:321091-321346+;Distance=1723;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 119;Tandem period 178;Tandem period 59;RightRepeat=Self chain;Tandem period 119;Tandem period 178;Tandem period 59;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr7	CG	SV	319368	319821	10	+	.	ID=3141;Type=deletion;Left=chr7:319368-319821;Right=chr7:321091-321346
chr7	CG	SV	321091	321346	10	+	.	ID=3141;Type=deletion;Left=chr7:319368-319821;Right=chr7:321091-321346
chr7	CG	SV	572350	572810	13	.	.	ID=1193;Type=tandem-duplication;Left=chr7:572350-572578-;Right=chr7:572587-572810-;Distance=232;DiscordantMatePairAlignments=13;LeftRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;Self chain;Tandem TCA;Tandem period 12;Tandem period 9;RightRepeat=(CAT)n:Simple_repeat:Simple_repeat;Self chain;Tandem TCA;Tandem period 12;Tandem period 15;Tandem period 9;LeftGenes=NM_001164758:-;NM_001164759:-;NM_001164760:-;NM_001164761:-;NM_001164762:-;NM_002735:-;RightGenes=NM_001164758:-;NM_001164759:-;NM_001164760:-;NM_001164761:-;NM_001164762:-;NM_002735:-;XRef=;Frequency=1.00
chr7	CG	SV	572350	572578	13	-	.	ID=1193;Type=tandem-duplication;Left=chr7:572350-572578;Right=chr7:572587-572810
chr7	CG	SV	572587	572810	13	-	.	ID=1193;Type=tandem-duplication;Left=chr7:572350-572578;Right=chr7:572587-572810
chr7	CG	SV	1133996	1135965	27	.	.	ID=3136;Type=deletion;Left=chr7:1133996-1134442+;Right=chr7:1135666-1135965+;Distance=1670;DiscordantMatePairAlignments=27;LeftRepeat=AluSg/x:SINE:Alu;Self chain;Tandem period 46;RightRepeat=AluJo:SINE:Alu;Self chain;Tandem period 46;LeftGenes=NM_001134395:-;NM_001134396:-;NM_032350:-;RightGenes=NM_001134395:-;NM_001134396:-;NM_032350:-;XRef=;Frequency=0.47
chr7	CG	SV	1133996	1134442	27	+	.	ID=3136;Type=deletion;Left=chr7:1133996-1134442;Right=chr7:1135666-1135965
chr7	CG	SV	1135666	1135965	27	+	.	ID=3136;Type=deletion;Left=chr7:1133996-1134442;Right=chr7:1135666-1135965
chr7	CG	SV	1151596	1154610	59	.	.	ID=3135;Type=deletion;Left=chr7:1151596-1152051+;Right=chr7:1154186-1154610+;Distance=2590;DiscordantMatePairAlignments=59;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71703948 (chr7:1151590-1154180);Frequency=0.94
chr7	CG	SV	1151596	1152051	59	+	.	ID=3135;Type=deletion;Left=chr7:1151596-1152051;Right=chr7:1154186-1154610
chr7	CG	SV	1154186	1154610	59	+	.	ID=3135;Type=deletion;Left=chr7:1151596-1152051;Right=chr7:1154186-1154610
chr7	CG	SV	1162419	1163031	16	.	.	ID=3134;Type=deletion;Left=chr7:1162419-1162854+;Right=chr7:1162796-1163031+;Distance=377;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 63;RightRepeat=Self chain;Tandem period 63;LeftGenes=NM_182491:-;RightGenes=NM_182491:-;XRef=;Frequency=0.41
chr7	CG	SV	1162419	1162854	16	+	.	ID=3134;Type=deletion;Left=chr7:1162419-1162854;Right=chr7:1162796-1163031
chr7	CG	SV	1162796	1163031	16	+	.	ID=3134;Type=deletion;Left=chr7:1162419-1162854;Right=chr7:1162796-1163031
chr7	CG	SV	2931867	2932663	16	.	.	ID=3133;Type=deletion;Left=chr7:2931867-2932140+;Right=chr7:2932202-2932663+;Distance=335;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 33;LeftGenes=NM_032415:-;RightGenes=NM_032415:-;XRef=;Frequency=0.12
chr7	CG	SV	2931867	2932140	16	+	.	ID=3133;Type=deletion;Left=chr7:2931867-2932140;Right=chr7:2932202-2932663
chr7	CG	SV	2932202	2932663	16	+	.	ID=3133;Type=deletion;Left=chr7:2931867-2932140;Right=chr7:2932202-2932663
chr7	CG	SV	4047791	4049213	118	.	.	ID=3131;Type=deletion;Left=chr7:4047791-4048194+;Right=chr7:4048823-4049213+;Distance=1032;DiscordantMatePairAlignments=118;LeftRepeat=L1MC1:LINE:L1;RightRepeat=;LeftGenes=NM_152744:+;RightGenes=NM_152744:+;XRef=rs72449159 (chr7:4047790-4048822);Frequency=0.06
chr7	CG	SV	4047791	4048194	118	+	.	ID=3131;Type=deletion;Left=chr7:4047791-4048194;Right=chr7:4048823-4049213
chr7	CG	SV	4048823	4049213	118	+	.	ID=3131;Type=deletion;Left=chr7:4047791-4048194;Right=chr7:4048823-4049213
chr7	CG	SV	4089746	4089964	31	.	.	ID=1190;Type=tandem-duplication;Left=chr7:4089746-4089823-;Right=chr7:4089842-4089964-;Distance=141;DiscordantMatePairAlignments=31;LeftRepeat=CT-rich:Low_complexity:Low_complexity;Tandem period 20;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem period 20;LeftGenes=NM_152744:+;RightGenes=NM_152744:+;XRef=;Frequency=0.15
chr7	CG	SV	4089746	4089823	31	-	.	ID=1190;Type=tandem-duplication;Left=chr7:4089746-4089823;Right=chr7:4089842-4089964
chr7	CG	SV	4089842	4089964	31	-	.	ID=1190;Type=tandem-duplication;Left=chr7:4089746-4089823;Right=chr7:4089842-4089964
chr7	CG	SV	9601175	9602877	37	.	.	ID=3130;Type=deletion;Left=chr7:9601175-9601583+;Right=chr7:9602518-9602877+;Distance=1343;DiscordantMatePairAlignments=37;LeftRepeat=THE1D-int:LTR:MaLR;RightRepeat=THE1D-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs71014005 (chr7:9601175-9602518);Frequency=1.00
chr7	CG	SV	9601175	9601583	37	+	.	ID=3130;Type=deletion;Left=chr7:9601175-9601583;Right=chr7:9602518-9602877
chr7	CG	SV	9602518	9602877	37	+	.	ID=3130;Type=deletion;Left=chr7:9601175-9601583;Right=chr7:9602518-9602877
chr7	CG	SV	10470841	10473055	23	.	.	ID=3129;Type=deletion;Left=chr7:10470841-10471128+;Right=chr7:10472675-10473055+;Distance=1834;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;Tandem T;RightRepeat=MSTA:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr7	CG	SV	10470841	10471128	23	+	.	ID=3129;Type=deletion;Left=chr7:10470841-10471128;Right=chr7:10472675-10473055
chr7	CG	SV	10472675	10473055	23	+	.	ID=3129;Type=deletion;Left=chr7:10470841-10471128;Right=chr7:10472675-10473055
chr7	CG	SV	16138298	16140981	44	.	.	ID=3124;Type=deletion;Left=chr7:16138298-16138658+;Right=chr7:16140597-16140981+;Distance=2299;DiscordantMatePairAlignments=44;LeftRepeat=MLT1A0-int:LTR:MaLR;RightRepeat=Charlie3:DNA:MER1_type;LeftGenes=NM_001101417:-;NM_001101426:-;RightGenes=NM_001101417:-;NM_001101426:-;XRef=rs67864719 (chr7:16138298-16140597);Frequency=0.71
chr7	CG	SV	16138298	16138658	44	+	.	ID=3124;Type=deletion;Left=chr7:16138298-16138658;Right=chr7:16140597-16140981
chr7	CG	SV	16140597	16140981	44	+	.	ID=3124;Type=deletion;Left=chr7:16138298-16138658;Right=chr7:16140597-16140981
chr7	CG	SV	22401328	22403713	195	.	.	ID=3122;Type=deletion;Left=chr7:22401328-22401765+;Right=chr7:22403288-22403713+;Distance=1960;DiscordantMatePairAlignments=195;LeftRepeat=LOR1a:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72428882 (chr7:22401328-22403288);Frequency=0.71
chr7	CG	SV	22401328	22401765	195	+	.	ID=3122;Type=deletion;Left=chr7:22401328-22401765;Right=chr7:22403288-22403713
chr7	CG	SV	22403288	22403713	195	+	.	ID=3122;Type=deletion;Left=chr7:22401328-22401765;Right=chr7:22403288-22403713
chr7	CG	SV	24004690	24007027	100	.	.	ID=3121;Type=deletion;Left=chr7:24004690-24005202+;Right=chr7:24006599-24007027+;Distance=1909;DiscordantMatePairAlignments=100;LeftRepeat=;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66575194 (chr7:24004690-24006599);Frequency=0.94
chr7	CG	SV	24004690	24005202	100	+	.	ID=3121;Type=deletion;Left=chr7:24004690-24005202;Right=chr7:24006599-24007027
chr7	CG	SV	24006599	24007027	100	+	.	ID=3121;Type=deletion;Left=chr7:24004690-24005202;Right=chr7:24006599-24007027
chr7	CG	SV	24034628	24035045	18	.	.	ID=1188;Type=tandem-duplication;Left=chr7:24034628-24034839-;Right=chr7:24034833-24035045-;Distance=206;DiscordantMatePairAlignments=18;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr7	CG	SV	24034628	24034839	18	-	.	ID=1188;Type=tandem-duplication;Left=chr7:24034628-24034839;Right=chr7:24034833-24035045
chr7	CG	SV	24034833	24035045	18	-	.	ID=1188;Type=tandem-duplication;Left=chr7:24034628-24034839;Right=chr7:24034833-24035045
chr7	CG	SV	24224612	24225219	13	.	.	ID=3120;Type=deletion;Left=chr7:24224612-24224993+;Right=chr7:24225008-24225219+;Distance=396;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr7	CG	SV	24224612	24224993	13	+	.	ID=3120;Type=deletion;Left=chr7:24224612-24224993;Right=chr7:24225008-24225219
chr7	CG	SV	24225008	24225219	13	+	.	ID=3120;Type=deletion;Left=chr7:24224612-24224993;Right=chr7:24225008-24225219
chr7	CG	SV	25023983	25026894	83	.	.	ID=3118;Type=deletion;Left=chr7:25023983-25024475+;Right=chr7:25026392-25026894+;Distance=2409;DiscordantMatePairAlignments=83;LeftRepeat=Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr7	CG	SV	25023983	25024475	83	+	.	ID=3118;Type=deletion;Left=chr7:25023983-25024475;Right=chr7:25026392-25026894
chr7	CG	SV	25026392	25026894	83	+	.	ID=3118;Type=deletion;Left=chr7:25023983-25024475;Right=chr7:25026392-25026894
chr7	CG	SV	28180829	28181650	72	.	.	ID=3116;Type=deletion;Left=chr7:28180829-28181281+;Right=chr7:28181193-28181650+;Distance=364;DiscordantMatePairAlignments=72;LeftRepeat=;RightRepeat=;LeftGenes=NM_175061:-;RightGenes=NM_175061:-;XRef=rs66908294 (chr7:28180825-28181189);Frequency=0.76
chr7	CG	SV	28180829	28181281	72	+	.	ID=3116;Type=deletion;Left=chr7:28180829-28181281;Right=chr7:28181193-28181650
chr7	CG	SV	28181193	28181650	72	+	.	ID=3116;Type=deletion;Left=chr7:28180829-28181281;Right=chr7:28181193-28181650
chr7	CG	SV	28540887	28542032	32	.	.	ID=3115;Type=deletion;Left=chr7:28540887-28541321+;Right=chr7:28541730-28542032+;Distance=843;DiscordantMatePairAlignments=32;LeftRepeat=MIR:SINE:MIR;Self chain;RightRepeat=Self chain;LeftGenes=NM_004904:+;NM_182898:+;NM_182899:+;RightGenes=NM_004904:+;NM_182898:+;NM_182899:+;XRef=;Frequency=0.59
chr7	CG	SV	28540887	28541321	32	+	.	ID=3115;Type=deletion;Left=chr7:28540887-28541321;Right=chr7:28541730-28542032
chr7	CG	SV	28541730	28542032	32	+	.	ID=3115;Type=deletion;Left=chr7:28540887-28541321;Right=chr7:28541730-28542032
chr7	CG	SV	31282192	31285896	19	.	.	ID=3113;Type=deletion;Left=chr7:31282192-31282491+;Right=chr7:31285621-31285896+;Distance=3429;DiscordantMatePairAlignments=19;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr7	CG	SV	31282192	31282491	19	+	.	ID=3113;Type=deletion;Left=chr7:31282192-31282491;Right=chr7:31285621-31285896
chr7	CG	SV	31285621	31285896	19	+	.	ID=3113;Type=deletion;Left=chr7:31282192-31282491;Right=chr7:31285621-31285896
chr7	CG	SV	31553037	31559043	56	.	.	ID=342;Type=complex;Left=chr7:31553037-31553296-;Right=chr7:31558520-31559043+;Distance=5224;DiscordantMatePairAlignments=56;LeftRepeat=Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=NM_194300:+;RightGenes=NM_194300:+;XRef=;Frequency=0.59
chr7	CG	SV	31553037	31553296	56	-	.	ID=342;Type=complex;Left=chr7:31553037-31553296;Right=chr7:31558520-31559043
chr7	CG	SV	31558520	31559043	56	-	.	ID=342;Type=complex;Left=chr7:31553037-31553296;Right=chr7:31558520-31559043
chr7	CG	SV	31553554	31556796	69	.	.	ID=4542;Type=complex;Left=chr7:31553554-31553814+;Right=chr7:31556419-31556796-;Distance=3242;DiscordantMatePairAlignments=69;LeftRepeat=Self chain;THE1C:LTR:MaLR;RightRepeat=Self chain;LeftGenes=NM_194300:+;RightGenes=NM_194300:+;XRef=;Frequency=0.59
chr7	CG	SV	31553554	31553814	69	+	.	ID=4542;Type=complex;Left=chr7:31553554-31553814;Right=chr7:31556419-31556796
chr7	CG	SV	31556419	31556796	69	+	.	ID=4542;Type=complex;Left=chr7:31553554-31553814;Right=chr7:31556419-31556796
chr7	CG	SV	31556796	31558730	21	.	.	ID=3112;Type=complex;Left=chr7:31556796-31556949+;Right=chr7:31558520-31558730+;Distance=1724;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=NM_194300:+;RightGenes=NM_194300:+;XRef=;Frequency=0.59
chr7	CG	SV	31556796	31556949	21	+	.	ID=3112;Type=complex;Left=chr7:31556796-31556949;Right=chr7:31558520-31558730
chr7	CG	SV	31558520	31558730	21	+	.	ID=3112;Type=complex;Left=chr7:31556796-31556949;Right=chr7:31558520-31558730
chr7	CG	SV	32356690	32360010	139	.	.	ID=3111;Type=deletion;Left=chr7:32356690-32357111+;Right=chr7:32359637-32360010+;Distance=2947;DiscordantMatePairAlignments=139;LeftRepeat=(TA)n:Simple_repeat:Simple_repeat;Self chain;Tandem AT;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67720953 (chr7:32356676-32359637);Frequency=0.94
chr7	CG	SV	32356690	32357111	139	+	.	ID=3111;Type=deletion;Left=chr7:32356690-32357111;Right=chr7:32359637-32360010
chr7	CG	SV	32359637	32360010	139	+	.	ID=3111;Type=deletion;Left=chr7:32356690-32357111;Right=chr7:32359637-32360010
chr7	CG	SV	33370071	33370747	10	.	.	ID=3110;Type=deletion;Left=chr7:33370071-33370498+;Right=chr7:33370399-33370747+;Distance=328;DiscordantMatePairAlignments=10;LeftRepeat=L1ME1:LINE:L1;Self chain;RightRepeat=L1ME1:LINE:L1;Self chain;LeftGenes=NM_001033604:+;NM_001033605:+;NM_014451:+;NM_198428:+;RightGenes=NM_001033604:+;NM_001033605:+;NM_014451:+;NM_198428:+;XRef=;Frequency=0.59
chr7	CG	SV	33370071	33370498	10	+	.	ID=3110;Type=deletion;Left=chr7:33370071-33370498;Right=chr7:33370399-33370747
chr7	CG	SV	33370399	33370747	10	+	.	ID=3110;Type=deletion;Left=chr7:33370071-33370498;Right=chr7:33370399-33370747
chr7	CG	SV	33865381	33866101	57	.	.	ID=3109;Type=deletion;Left=chr7:33865381-33865894+;Right=chr7:33865712-33866101+;Distance=331;DiscordantMatePairAlignments=57;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66914971 (chr7:33865366-33865697);Frequency=1.00
chr7	CG	SV	33865381	33865894	57	+	.	ID=3109;Type=deletion;Left=chr7:33865381-33865894;Right=chr7:33865712-33866101
chr7	CG	SV	33865712	33866101	57	+	.	ID=3109;Type=deletion;Left=chr7:33865381-33865894;Right=chr7:33865712-33866101
chr7	CG	SV	37965041	37965814	16	.	.	ID=3108;Type=deletion;Left=chr7:37965041-37965522+;Right=chr7:37965356-37965814+;Distance=315;DiscordantMatePairAlignments=16;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67459099 (chr7:37965041-37965356);Frequency=1.00
chr7	CG	SV	37965041	37965522	16	+	.	ID=3108;Type=deletion;Left=chr7:37965041-37965522;Right=chr7:37965356-37965814
chr7	CG	SV	37965356	37965814	16	+	.	ID=3108;Type=deletion;Left=chr7:37965041-37965522;Right=chr7:37965356-37965814
chr7	CG	SV	47674807	47676054	69	.	.	ID=1186;Type=tandem-duplication;Left=chr7:47674807-47675243-;Right=chr7:47675586-47676054-;Distance=811;DiscordantMatePairAlignments=69;LeftRepeat=MLT1B:LTR:MaLR;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr7	CG	SV	47674807	47675243	69	-	.	ID=1186;Type=tandem-duplication;Left=chr7:47674807-47675243;Right=chr7:47675586-47676054
chr7	CG	SV	47675586	47676054	69	-	.	ID=1186;Type=tandem-duplication;Left=chr7:47674807-47675243;Right=chr7:47675586-47676054
chr7	CG	SV	52062468	52063178	15	.	.	ID=3104;Type=deletion;Left=chr7:52062468-52062935+;Right=chr7:52062781-52063178+;Distance=313;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10528342 (chr7:52062468-52062781);Frequency=1.00
chr7	CG	SV	52062468	52062935	15	+	.	ID=3104;Type=deletion;Left=chr7:52062468-52062935;Right=chr7:52062781-52063178
chr7	CG	SV	52062781	52063178	15	+	.	ID=3104;Type=deletion;Left=chr7:52062468-52062935;Right=chr7:52062781-52063178
chr7	CG	SV	54563980	54565464	77	.	.	ID=3101;Type=deletion;Left=chr7:54563980-54564355+;Right=chr7:54564927-54565464+;Distance=947;DiscordantMatePairAlignments=77;LeftRepeat=L1MC3:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72118222 (chr7:54563980-54564927);Frequency=0.12
chr7	CG	SV	54563980	54564355	77	+	.	ID=3101;Type=deletion;Left=chr7:54563980-54564355;Right=chr7:54564927-54565464
chr7	CG	SV	54564927	54565464	77	+	.	ID=3101;Type=deletion;Left=chr7:54563980-54564355;Right=chr7:54564927-54565464
chr7	CG	SV	55254252	55257008	37	.	.	ID=3100;Type=deletion;Left=chr7:55254252-55254540+;Right=chr7:55256570-55257008+;Distance=2318;DiscordantMatePairAlignments=37;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71805120 (chr7:55254237-55256555);Frequency=0.82
chr7	CG	SV	55254252	55254540	37	+	.	ID=3100;Type=deletion;Left=chr7:55254252-55254540;Right=chr7:55256570-55257008
chr7	CG	SV	55256570	55257008	37	+	.	ID=3100;Type=deletion;Left=chr7:55254252-55254540;Right=chr7:55256570-55257008
chr7	CG	SV	56729478	56737594	11	.	.	ID=3099;Type=deletion;Left=chr7:56729478-56729874+;Right=chr7:56737445-56737594+;Distance=7967;DiscordantMatePairAlignments=11;LeftRepeat=SegDup;Self chain;RightRepeat=MER49:LTR:ERV1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs67974562 (chr7:56729478-56737445);Frequency=0.35
chr7	CG	SV	56729478	56729874	11	+	.	ID=3099;Type=deletion;Left=chr7:56729478-56729874;Right=chr7:56737445-56737594
chr7	CG	SV	56737445	56737594	11	+	.	ID=3099;Type=deletion;Left=chr7:56729478-56729874;Right=chr7:56737445-56737594
chr7	CG	SV	62933722	67065293	11	.	.	ID=1184;Type=tandem-duplication;Left=chr7:62933722-62933879-;Right=chr7:67064961-67065293-;Distance=4131414;DiscordantMatePairAlignments=11;LeftRepeat=SegDup;Self chain;RightRepeat=HAL1:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr7	CG	SV	62933722	62933879	11	-	.	ID=1184;Type=tandem-duplication;Left=chr7:62933722-62933879;Right=chr7:67064961-67065293
chr7	CG	SV	67064961	67065293	11	-	.	ID=1184;Type=tandem-duplication;Left=chr7:62933722-62933879;Right=chr7:67064961-67065293
chr7	CG	SV	63953250	63955951	71	.	.	ID=3094;Type=deletion;Left=chr7:63953250-63953699+;Right=chr7:63955501-63955951+;Distance=2251;DiscordantMatePairAlignments=71;LeftRepeat=Self chain;RightRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;LeftGenes=;RightGenes=;XRef=rs71014041 (chr7:63953259-63955510);Frequency=1.00
chr7	CG	SV	63953250	63953699	71	+	.	ID=3094;Type=deletion;Left=chr7:63953250-63953699;Right=chr7:63955501-63955951
chr7	CG	SV	63955501	63955951	71	+	.	ID=3094;Type=deletion;Left=chr7:63953250-63953699;Right=chr7:63955501-63955951
chr7	CG	SV	65831372	73020203	17	.	.	ID=3089;Type=deletion;Left=chr7:65831372-65831534+;Right=chr7:73020066-73020203+;Distance=7188694;DiscordantMatePairAlignments=17;LeftRepeat=C-rich:Low_complexity:Low_complexity;SegDup;Self chain;RightRepeat=C-rich:Low_complexity:Low_complexity;SegDup;Self chain;Tandem period 12;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	65831372	65831534	17	+	.	ID=3089;Type=deletion;Left=chr7:65831372-65831534;Right=chr7:73020066-73020203
chr7	CG	SV	73020066	73020203	17	+	.	ID=3089;Type=deletion;Left=chr7:65831372-65831534;Right=chr7:73020066-73020203
chr7	CG	SV	67273208	97920775	31	.	.	ID=4539;Type=probable-inversion;Left=chr7:67273208-67273549+;Right=chr7:97920474-97920775-;Distance=30647567;DiscordantMatePairAlignments=31;LeftRepeat=MER5A:DNA:MER1_type;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	67273208	67273549	31	+	.	ID=4539;Type=probable-inversion;Left=chr7:67273208-67273549;Right=chr7:97920474-97920775
chr7	CG	SV	97920474	97920775	31	+	.	ID=4539;Type=probable-inversion;Left=chr7:67273208-67273549;Right=chr7:97920474-97920775
chr7	CG	SV	67364377	67364866	14	.	.	ID=3091;Type=deletion;Left=chr7:67364377-67364870+;Right=chr7:67364697-67364866+;Distance=320;DiscordantMatePairAlignments=14;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	67364377	67364870	14	+	.	ID=3091;Type=deletion;Left=chr7:67364377-67364870;Right=chr7:67364697-67364866
chr7	CG	SV	67364697	67364866	14	+	.	ID=3091;Type=deletion;Left=chr7:67364377-67364870;Right=chr7:67364697-67364866
chr7	CG	SV	68100015	68100717	25	.	.	ID=3090;Type=deletion;Left=chr7:68100015-68100503+;Right=chr7:68100334-68100717+;Distance=319;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66915603 (chr7:68100006-68100325);Frequency=1.00
chr7	CG	SV	68100015	68100503	25	+	.	ID=3090;Type=deletion;Left=chr7:68100015-68100503;Right=chr7:68100334-68100717
chr7	CG	SV	68100334	68100717	25	+	.	ID=3090;Type=deletion;Left=chr7:68100015-68100503;Right=chr7:68100334-68100717
chr7	CG	SV	70063886	70077297	22	.	.	ID=341;Type=probable-inversion;Left=chr7:70063886-70064120-;Right=chr7:70076816-70077297+;Distance=12696;DiscordantMatePairAlignments=22;LeftRepeat=L1MEc:LINE:L1;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr7	CG	SV	70063886	70064120	22	-	.	ID=341;Type=probable-inversion;Left=chr7:70063886-70064120;Right=chr7:70076816-70077297
chr7	CG	SV	70076816	70077297	22	-	.	ID=341;Type=probable-inversion;Left=chr7:70063886-70064120;Right=chr7:70076816-70077297
chr7	CG	SV	70849846	70851362	56	.	.	ID=3088;Type=deletion;Left=chr7:70849846-70850260+;Right=chr7:70850903-70851362+;Distance=1057;DiscordantMatePairAlignments=56;LeftRepeat=AluSp:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	70849846	70850260	56	+	.	ID=3088;Type=deletion;Left=chr7:70849846-70850260;Right=chr7:70850903-70851362
chr7	CG	SV	70850903	70851362	56	+	.	ID=3088;Type=deletion;Left=chr7:70849846-70850260;Right=chr7:70850903-70851362
chr7	CG	SV	77797588	77798181	12	.	.	ID=3085;Type=deletion;Left=chr7:77797588-77798033+;Right=chr7:77797912-77798181+;Distance=324;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=NM_012301:-;RightGenes=NM_012301:-;XRef=rs67827072 (chr7:77797572-77797896);Frequency=0.53
chr7	CG	SV	77797588	77798033	12	+	.	ID=3085;Type=deletion;Left=chr7:77797588-77798033;Right=chr7:77797912-77798181
chr7	CG	SV	77797912	77798181	12	+	.	ID=3085;Type=deletion;Left=chr7:77797588-77798033;Right=chr7:77797912-77798181
chr7	CG	SV	80639635	80640381	10	.	.	ID=3083;Type=deletion;Left=chr7:80639635-80640003+;Right=chr7:80639971-80640381+;Distance=336;DiscordantMatePairAlignments=10;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs71014054 (chr7:80639635-80639971);Frequency=1.00
chr7	CG	SV	80639635	80640003	10	+	.	ID=3083;Type=deletion;Left=chr7:80639635-80640003;Right=chr7:80639971-80640381
chr7	CG	SV	80639971	80640381	10	+	.	ID=3083;Type=deletion;Left=chr7:80639635-80640003;Right=chr7:80639971-80640381
chr7	CG	SV	81279609	81280741	18	.	.	ID=3081;Type=deletion;Left=chr7:81279609-81280093+;Right=chr7:81280516-81280741+;Distance=907;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr7	CG	SV	81279609	81280093	18	+	.	ID=3081;Type=deletion;Left=chr7:81279609-81280093;Right=chr7:81280516-81280741
chr7	CG	SV	81280516	81280741	18	+	.	ID=3081;Type=deletion;Left=chr7:81279609-81280093;Right=chr7:81280516-81280741
chr7	CG	SV	86674565	86675116	11	.	.	ID=3079;Type=deletion;Left=chr7:86674565-86675023+;Right=chr7:86674874-86675116+;Distance=309;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_024315:-;RightGenes=NM_024315:-;XRef=;Frequency=1.00
chr7	CG	SV	86674565	86675023	11	+	.	ID=3079;Type=deletion;Left=chr7:86674565-86675023;Right=chr7:86674874-86675116
chr7	CG	SV	86674874	86675116	11	+	.	ID=3079;Type=deletion;Left=chr7:86674565-86675023;Right=chr7:86674874-86675116
chr7	CG	SV	87929243	87930089	45	.	.	ID=3078;Type=deletion;Left=chr7:87929243-87929769+;Right=chr7:87929693-87930089+;Distance=450;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66468286 (chr7:87929235-87929685);Frequency=1.00
chr7	CG	SV	87929243	87929769	45	+	.	ID=3078;Type=deletion;Left=chr7:87929243-87929769;Right=chr7:87929693-87930089
chr7	CG	SV	87929693	87930089	45	+	.	ID=3078;Type=deletion;Left=chr7:87929243-87929769;Right=chr7:87929693-87930089
chr7	CG	SV	89392108	89392924	38	.	.	ID=3077;Type=deletion;Left=chr7:89392108-89392571+;Right=chr7:89392528-89392924+;Distance=420;DiscordantMatePairAlignments=38;LeftRepeat=GA-rich:Low_complexity:Low_complexity;Tandem period 35;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71014061 (chr7:89392102-89392487);Frequency=1.00
chr7	CG	SV	89392108	89392571	38	+	.	ID=3077;Type=deletion;Left=chr7:89392108-89392571;Right=chr7:89392528-89392924
chr7	CG	SV	89392528	89392924	38	+	.	ID=3077;Type=deletion;Left=chr7:89392108-89392571;Right=chr7:89392528-89392924
chr7	CG	SV	89648345	89650865	20	.	.	ID=3076;Type=deletion;Left=chr7:89648345-89648722+;Right=chr7:89650537-89650865+;Distance=2192;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs66486932 (chr7:89648345-89650537);Frequency=0.76
chr7	CG	SV	89648345	89648722	20	+	.	ID=3076;Type=deletion;Left=chr7:89648345-89648722;Right=chr7:89650537-89650865
chr7	CG	SV	89650537	89650865	20	+	.	ID=3076;Type=deletion;Left=chr7:89648345-89648722;Right=chr7:89650537-89650865
chr7	CG	SV	93374204	93374268	10	.	.	ID=4538;Type=probable-inversion;Left=chr7:93374204-93374672+;Right=chr7:93374198-93374268-;Distance=64;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_021955:+;RightGenes=NM_021955:+;XRef=;Frequency=0.10
chr7	CG	SV	93374204	93374672	10	+	.	ID=4538;Type=probable-inversion;Left=chr7:93374204-93374672;Right=chr7:93374198-93374268
chr7	CG	SV	93374198	93374268	10	+	.	ID=4538;Type=probable-inversion;Left=chr7:93374204-93374672;Right=chr7:93374198-93374268
chr7	CG	SV	93379752	93380913	11	.	.	ID=3072;Type=deletion;Left=chr7:93379752-93379970+;Right=chr7:93380475-93380913+;Distance=723;DiscordantMatePairAlignments=11;LeftRepeat=L2:LINE:L2;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs67564819 (chr7:93379755-93380475);Frequency=0.82
chr7	CG	SV	93379752	93379970	11	+	.	ID=3072;Type=deletion;Left=chr7:93379752-93379970;Right=chr7:93380475-93380913
chr7	CG	SV	93380475	93380913	11	+	.	ID=3072;Type=deletion;Left=chr7:93379752-93379970;Right=chr7:93380475-93380913
chr7	CG	SV	95224204	95224866	19	.	.	ID=3071;Type=deletion;Left=chr7:95224204-95224679+;Right=chr7:95224535-95224866+;Distance=331;DiscordantMatePairAlignments=19;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6150237 (chr7:95224189-95224520);Frequency=0.88
chr7	CG	SV	95224204	95224679	19	+	.	ID=3071;Type=deletion;Left=chr7:95224204-95224679;Right=chr7:95224535-95224866
chr7	CG	SV	95224535	95224866	19	+	.	ID=3071;Type=deletion;Left=chr7:95224204-95224679;Right=chr7:95224535-95224866
chr7	CG	SV	96313831	96320352	64	.	.	ID=3069;Type=deletion;Left=chr7:96313831-96314195+;Right=chr7:96319939-96320352+;Distance=6108;DiscordantMatePairAlignments=64;LeftRepeat=L1MD2:LINE:L1;Self chain;RightRepeat=L1MD2:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71014064 (chr7:96313837-96319945);Frequency=1.00
chr7	CG	SV	96313831	96314195	64	+	.	ID=3069;Type=deletion;Left=chr7:96313831-96314195;Right=chr7:96319939-96320352
chr7	CG	SV	96319939	96320352	64	+	.	ID=3069;Type=deletion;Left=chr7:96313831-96314195;Right=chr7:96319939-96320352
chr7	CG	SV	100388256	100389181	17	.	.	ID=1181;Type=distal-duplication;Left=chr7:100388256-100388524-;Right=chr7:100388941-100389181-;Distance=657;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;Tandem period 51;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	100388256	100388524	17	-	.	ID=1181;Type=distal-duplication;Left=chr7:100388256-100388524;Right=chr7:100388941-100389181
chr7	CG	SV	100388941	100389181	17	-	.	ID=1181;Type=distal-duplication;Left=chr7:100388256-100388524;Right=chr7:100388941-100389181
chr7	CG	SV	100388672	100389294	24	.	.	ID=3067;Type=distal-duplication;Left=chr7:100388672-100389212+;Right=chr7:100389182-100389294+;Distance=510;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	100388672	100389212	24	+	.	ID=3067;Type=distal-duplication;Left=chr7:100388672-100389212;Right=chr7:100389182-100389294
chr7	CG	SV	100389182	100389294	24	+	.	ID=3067;Type=distal-duplication;Left=chr7:100388672-100389212;Right=chr7:100389182-100389294
chr7	CG	SV	100400459	100401375	26	.	.	ID=3066;Type=deletion;Left=chr7:100400459-100400863+;Right=chr7:100401199-100401375+;Distance=740;DiscordantMatePairAlignments=26;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_001164462:+;RightGenes=NM_001164462:+;XRef=;Frequency=1.00
chr7	CG	SV	100400459	100400863	26	+	.	ID=3066;Type=deletion;Left=chr7:100400459-100400863;Right=chr7:100401199-100401375
chr7	CG	SV	100401199	100401375	26	+	.	ID=3066;Type=deletion;Left=chr7:100400459-100400863;Right=chr7:100401199-100401375
chr7	CG	SV	100787986	100790847	37	.	.	ID=3065;Type=deletion;Left=chr7:100787986-100788402+;Right=chr7:100790532-100790847+;Distance=2546;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs66862807 (chr7:100787986-100790532);Frequency=0.41
chr7	CG	SV	100787986	100788402	37	+	.	ID=3065;Type=deletion;Left=chr7:100787986-100788402;Right=chr7:100790532-100790847
chr7	CG	SV	100790532	100790847	37	+	.	ID=3065;Type=deletion;Left=chr7:100787986-100788402;Right=chr7:100790532-100790847
chr7	CG	SV	100845908	100847367	63	.	.	ID=3064;Type=deletion;Left=chr7:100845908-100846348+;Right=chr7:100847017-100847367+;Distance=1109;DiscordantMatePairAlignments=63;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_133457:+;RightGenes=NM_133457:+;XRef=;Frequency=0.29
chr7	CG	SV	100845908	100846348	63	+	.	ID=3064;Type=deletion;Left=chr7:100845908-100846348;Right=chr7:100847017-100847367
chr7	CG	SV	100847017	100847367	63	+	.	ID=3064;Type=deletion;Left=chr7:100845908-100846348;Right=chr7:100847017-100847367
chr7	CG	SV	101120931	101121414	11	.	.	ID=3063;Type=deletion;Left=chr7:101120931-101121339+;Right=chr7:101121251-101121414+;Distance=320;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	101120931	101121339	11	+	.	ID=3063;Type=deletion;Left=chr7:101120931-101121339;Right=chr7:101121251-101121414
chr7	CG	SV	101121251	101121414	11	+	.	ID=3063;Type=deletion;Left=chr7:101120931-101121339;Right=chr7:101121251-101121414
chr7	CG	SV	103250316	103251073	11	.	.	ID=3061;Type=deletion;Left=chr7:103250316-103250777+;Right=chr7:103250638-103251073+;Distance=322;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_005045:-;NM_173054:-;RightGenes=NM_005045:-;NM_173054:-;XRef=rs67327825 (chr7:103250316-103250638);Frequency=1.00
chr7	CG	SV	103250316	103250777	11	+	.	ID=3061;Type=deletion;Left=chr7:103250316-103250777;Right=chr7:103250638-103251073
chr7	CG	SV	103250638	103251073	11	+	.	ID=3061;Type=deletion;Left=chr7:103250316-103250777;Right=chr7:103250638-103251073
chr7	CG	SV	108140093	108140802	12	.	.	ID=3058;Type=deletion;Left=chr7:108140093-108140553+;Right=chr7:108140418-108140802+;Distance=325;DiscordantMatePairAlignments=12;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66463747 (chr7:108140082-108140407);Frequency=0.82
chr7	CG	SV	108140093	108140553	12	+	.	ID=3058;Type=deletion;Left=chr7:108140093-108140553;Right=chr7:108140418-108140802
chr7	CG	SV	108140418	108140802	12	+	.	ID=3058;Type=deletion;Left=chr7:108140093-108140553;Right=chr7:108140418-108140802
chr7	CG	SV	109223925	109241443	11	.	.	ID=3057;Type=deletion;Left=chr7:109223925-109224312+;Right=chr7:109241137-109241443+;Distance=17212;DiscordantMatePairAlignments=11;LeftRepeat=L1PA4:LINE:L1;RightRepeat=L1MD2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr7	CG	SV	109223925	109224312	11	+	.	ID=3057;Type=deletion;Left=chr7:109223925-109224312;Right=chr7:109241137-109241443
chr7	CG	SV	109241137	109241443	11	+	.	ID=3057;Type=deletion;Left=chr7:109223925-109224312;Right=chr7:109241137-109241443
chr7	CG	SV	113203403	113209923	133	.	.	ID=3055;Type=deletion;Left=chr7:113203403-113203869+;Right=chr7:113209449-113209923+;Distance=6046;DiscordantMatePairAlignments=133;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66950453 (chr7:113203397-113209443);Frequency=1.00
chr7	CG	SV	113203403	113203869	133	+	.	ID=3055;Type=deletion;Left=chr7:113203403-113203869;Right=chr7:113209449-113209923
chr7	CG	SV	113209449	113209923	133	+	.	ID=3055;Type=deletion;Left=chr7:113203403-113203869;Right=chr7:113209449-113209923
chr7	CG	SV	116629253	116630101	21	.	.	ID=3037;Type=deletion;Left=chr7:116629253-116629699+;Right=chr7:116629564-116630101+;Distance=311;DiscordantMatePairAlignments=21;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=NM_018412:+;NM_021908:+;NR_002332:+;RightGenes=NM_018412:+;NM_021908:+;NR_002332:+;XRef=rs10522424 (chr7:116629253-116629564);Frequency=0.71
chr7	CG	SV	116629253	116629699	21	+	.	ID=3037;Type=deletion;Left=chr7:116629253-116629699;Right=chr7:116629564-116630101
chr7	CG	SV	116629564	116630101	21	+	.	ID=3037;Type=deletion;Left=chr7:116629253-116629699;Right=chr7:116629564-116630101
chr7	CG	SV	118131047	118131798	69	.	.	ID=3035;Type=deletion;Left=chr7:118131047-118131519+;Right=chr7:118131402-118131798+;Distance=355;DiscordantMatePairAlignments=69;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=ERVL-E:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=rs72457038 (chr7:118131036-118131391);Frequency=1.00
chr7	CG	SV	118131047	118131519	69	+	.	ID=3035;Type=deletion;Left=chr7:118131047-118131519;Right=chr7:118131402-118131798
chr7	CG	SV	118131402	118131798	69	+	.	ID=3035;Type=deletion;Left=chr7:118131047-118131519;Right=chr7:118131402-118131798
chr7	CG	SV	118618484	118622317	75	.	.	ID=3034;Type=deletion;Left=chr7:118618484-118618890+;Right=chr7:118621990-118622317+;Distance=3506;DiscordantMatePairAlignments=75;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66490609 (chr7:118618495-118621990);Frequency=0.53
chr7	CG	SV	118618484	118618890	75	+	.	ID=3034;Type=deletion;Left=chr7:118618484-118618890;Right=chr7:118621990-118622317
chr7	CG	SV	118621990	118622317	75	+	.	ID=3034;Type=deletion;Left=chr7:118618484-118618890;Right=chr7:118621990-118622317
chr7	CG	SV	125052346	125053124	26	.	.	ID=3033;Type=deletion;Left=chr7:125052346-125052845+;Right=chr7:125052677-125053124+;Distance=331;DiscordantMatePairAlignments=26;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71709281 (chr7:125052336-125052667);Frequency=1.00
chr7	CG	SV	125052346	125052845	26	+	.	ID=3033;Type=deletion;Left=chr7:125052346-125052845;Right=chr7:125052677-125053124
chr7	CG	SV	125052677	125053124	26	+	.	ID=3033;Type=deletion;Left=chr7:125052346-125052845;Right=chr7:125052677-125053124
chr7	CG	SV	125833125	125839101	46	.	.	ID=3032;Type=deletion;Left=chr7:125833125-125833509+;Right=chr7:125838686-125839101+;Distance=5561;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=MLT1J:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs66526160 (chr7:125833122-125838683);Frequency=0.94
chr7	CG	SV	125833125	125833509	46	+	.	ID=3032;Type=deletion;Left=chr7:125833125-125833509;Right=chr7:125838686-125839101
chr7	CG	SV	125838686	125839101	46	+	.	ID=3032;Type=deletion;Left=chr7:125833125-125833509;Right=chr7:125838686-125839101
chr7	CG	SV	127407401	127408190	16	.	.	ID=3031;Type=deletion;Left=chr7:127407401-127407737+;Right=chr7:127407719-127408190+;Distance=318;DiscordantMatePairAlignments=16;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_014390:+;RightGenes=NM_014390:+;XRef=rs72415943 (chr7:127407401-127407719);Frequency=0.94
chr7	CG	SV	127407401	127407737	16	+	.	ID=3031;Type=deletion;Left=chr7:127407401-127407737;Right=chr7:127407719-127408190
chr7	CG	SV	127407719	127408190	16	+	.	ID=3031;Type=deletion;Left=chr7:127407401-127407737;Right=chr7:127407719-127408190
chr7	CG	SV	127553664	127554396	12	.	.	ID=3030;Type=deletion;Left=chr7:127553664-127554246+;Right=chr7:127553978-127554396+;Distance=314;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66906374 (chr7:127553650-127553964);Frequency=0.88
chr7	CG	SV	127553664	127554246	12	+	.	ID=3030;Type=deletion;Left=chr7:127553664-127554246;Right=chr7:127553978-127554396
chr7	CG	SV	127553978	127554396	12	+	.	ID=3030;Type=deletion;Left=chr7:127553664-127554246;Right=chr7:127553978-127554396
chr7	CG	SV	128096462	128097203	10	.	.	ID=3029;Type=deletion;Left=chr7:128096462-128096891+;Right=chr7:128096780-128097203+;Distance=318;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10705753 (chr7:128096462-128096780);Frequency=1.00
chr7	CG	SV	128096462	128096891	10	+	.	ID=3029;Type=deletion;Left=chr7:128096462-128096891;Right=chr7:128096780-128097203
chr7	CG	SV	128096780	128097203	10	+	.	ID=3029;Type=deletion;Left=chr7:128096462-128096891;Right=chr7:128096780-128097203
chr7	CG	SV	132758230	132758997	13	.	.	ID=3028;Type=deletion;Left=chr7:132758230-132758598+;Right=chr7:132758562-132758997+;Distance=332;DiscordantMatePairAlignments=13;LeftRepeat=AluYb9:SINE:Alu;RightRepeat=;LeftGenes=NM_001037126:+;NM_021807:+;RightGenes=NM_001037126:+;NM_021807:+;XRef=rs34260188 (chr7:132758230-132758562);Frequency=0.59
chr7	CG	SV	132758230	132758598	13	+	.	ID=3028;Type=deletion;Left=chr7:132758230-132758598;Right=chr7:132758562-132758997
chr7	CG	SV	132758562	132758997	13	+	.	ID=3028;Type=deletion;Left=chr7:132758230-132758598;Right=chr7:132758562-132758997
chr7	CG	SV	133435543	133449273	85	.	.	ID=3027;Type=deletion;Left=chr7:133435543-133435805+;Right=chr7:133448872-133449273+;Distance=13329;DiscordantMatePairAlignments=85;LeftRepeat=MLT1C:LTR:MaLR;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr7	CG	SV	133435543	133435805	85	+	.	ID=3027;Type=deletion;Left=chr7:133435543-133435805;Right=chr7:133448872-133449273
chr7	CG	SV	133448872	133449273	85	+	.	ID=3027;Type=deletion;Left=chr7:133435543-133435805;Right=chr7:133448872-133449273
chr7	CG	SV	134000547	134001420	38	.	.	ID=3026;Type=deletion;Left=chr7:134000547-134000986+;Right=chr7:134000970-134001420+;Distance=423;DiscordantMatePairAlignments=38;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001724:+;NM_199186:+;RightGenes=NM_001724:+;NM_199186:+;XRef=rs71828851 (chr7:134000539-134000962);Frequency=0.59
chr7	CG	SV	134000547	134000986	38	+	.	ID=3026;Type=deletion;Left=chr7:134000547-134000986;Right=chr7:134000970-134001420
chr7	CG	SV	134000970	134001420	38	+	.	ID=3026;Type=deletion;Left=chr7:134000547-134000986;Right=chr7:134000970-134001420
chr7	CG	SV	137946987	137948232	21	.	.	ID=3023;Type=deletion;Left=chr7:137946987-137947324+;Right=chr7:137947759-137948232+;Distance=772;DiscordantMatePairAlignments=21;LeftRepeat=L1MA5A:LINE:L1;RightRepeat=;LeftGenes=NM_001139456:-;NM_174959:-;RightGenes=NM_001139456:-;NM_174959:-;XRef=rs72467481 (chr7:137946996-137947763);Frequency=0.82
chr7	CG	SV	137946987	137947324	21	+	.	ID=3023;Type=deletion;Left=chr7:137946987-137947324;Right=chr7:137947759-137948232
chr7	CG	SV	137947759	137948232	21	+	.	ID=3023;Type=deletion;Left=chr7:137946987-137947324;Right=chr7:137947759-137948232
chr7	CG	SV	139827947	139835689	35	.	.	ID=1167;Type=tandem-duplication;Left=chr7:139827947-139828055-;Right=chr7:139835307-139835689-;Distance=7634;DiscordantMatePairAlignments=35;LeftRepeat=LTR49:LTR:ERV1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr7	CG	SV	139827947	139828055	35	-	.	ID=1167;Type=tandem-duplication;Left=chr7:139827947-139828055;Right=chr7:139835307-139835689
chr7	CG	SV	139835307	139835689	35	-	.	ID=1167;Type=tandem-duplication;Left=chr7:139827947-139828055;Right=chr7:139835307-139835689
chr7	CG	SV	141726639	141727444	26	.	.	ID=3018;Type=deletion;Left=chr7:141726639-141727029+;Right=chr7:141726977-141727444+;Distance=338;DiscordantMatePairAlignments=26;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71014097 (chr7:141726639-141726977);Frequency=1.00
chr7	CG	SV	141726639	141727029	26	+	.	ID=3018;Type=deletion;Left=chr7:141726639-141727029;Right=chr7:141726977-141727444
chr7	CG	SV	141726977	141727444	26	+	.	ID=3018;Type=deletion;Left=chr7:141726639-141727029;Right=chr7:141726977-141727444
chr7	CG	SV	143468426	143475437	102	.	.	ID=3016;Type=deletion;Left=chr7:143468426-143468814+;Right=chr7:143475011-143475437+;Distance=6585;DiscordantMatePairAlignments=102;LeftRepeat=Self chain;RightRepeat=L1M3e:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	143468426	143468814	102	+	.	ID=3016;Type=deletion;Left=chr7:143468426-143468814;Right=chr7:143475011-143475437
chr7	CG	SV	143475011	143475437	102	+	.	ID=3016;Type=deletion;Left=chr7:143468426-143468814;Right=chr7:143475011-143475437
chr7	CG	SV	144547817	144552682	45	.	.	ID=3015;Type=deletion;Left=chr7:144547817-144548242+;Right=chr7:144552334-144552682+;Distance=4517;DiscordantMatePairAlignments=45;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr7	CG	SV	144547817	144548242	45	+	.	ID=3015;Type=deletion;Left=chr7:144547817-144548242;Right=chr7:144552334-144552682
chr7	CG	SV	144552334	144552682	45	+	.	ID=3015;Type=deletion;Left=chr7:144547817-144548242;Right=chr7:144552334-144552682
chr7	CG	SV	144634401	144650200	123	.	.	ID=3014;Type=deletion;Left=chr7:144634401-144634848+;Right=chr7:144649787-144650200+;Distance=15386;DiscordantMatePairAlignments=123;LeftRepeat=;RightRepeat=HERV16:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	144634401	144634848	123	+	.	ID=3014;Type=deletion;Left=chr7:144634401-144634848;Right=chr7:144649787-144650200
chr7	CG	SV	144649787	144650200	123	+	.	ID=3014;Type=deletion;Left=chr7:144634401-144634848;Right=chr7:144649787-144650200
chr7	CG	SV	147703799	147707641	24	.	.	ID=3012;Type=deletion;Left=chr7:147703799-147704185+;Right=chr7:147707259-147707641+;Distance=3460;DiscordantMatePairAlignments=24;LeftRepeat=AluSg1:SINE:Alu;RightRepeat=;LeftGenes=NM_014141:+;RightGenes=NM_014141:+;XRef=rs67994340 (chr7:147703796-147707256);Frequency=1.00
chr7	CG	SV	147703799	147704185	24	+	.	ID=3012;Type=deletion;Left=chr7:147703799-147704185;Right=chr7:147707259-147707641
chr7	CG	SV	147707259	147707641	24	+	.	ID=3012;Type=deletion;Left=chr7:147703799-147704185;Right=chr7:147707259-147707641
chr7	CG	SV	150349957	150350558	14	.	.	ID=3010;Type=deletion;Left=chr7:150349957-150350374+;Right=chr7:150350444-150350558+;Distance=487;DiscordantMatePairAlignments=14;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_173681:-;RightGenes=NM_173681:-;XRef=;Frequency=0.18
chr7	CG	SV	150349957	150350374	14	+	.	ID=3010;Type=deletion;Left=chr7:150349957-150350374;Right=chr7:150350444-150350558
chr7	CG	SV	150350444	150350558	14	+	.	ID=3010;Type=deletion;Left=chr7:150349957-150350374;Right=chr7:150350444-150350558
chr7	CG	SV	151912656	151915686	42	.	.	ID=3005;Type=deletion;Left=chr7:151912656-151913057+;Right=chr7:151915268-151915686+;Distance=2612;DiscordantMatePairAlignments=42;LeftRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;RightRepeat=L1MC3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr7	CG	SV	151912656	151913057	42	+	.	ID=3005;Type=deletion;Left=chr7:151912656-151913057;Right=chr7:151915268-151915686
chr7	CG	SV	151915268	151915686	42	+	.	ID=3005;Type=deletion;Left=chr7:151912656-151913057;Right=chr7:151915268-151915686
chr7	CG	SV	152941071	152942151	78	.	.	ID=3003;Type=deletion;Left=chr7:152941071-152941430+;Right=chr7:152941761-152942151+;Distance=690;DiscordantMatePairAlignments=78;LeftRepeat=Self chain;RightRepeat=L1MC4:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71016803 (chr7:152941071-152941761);Frequency=1.00
chr7	CG	SV	152941071	152941430	78	+	.	ID=3003;Type=deletion;Left=chr7:152941071-152941430;Right=chr7:152941761-152942151
chr7	CG	SV	152941761	152942151	78	+	.	ID=3003;Type=deletion;Left=chr7:152941071-152941430;Right=chr7:152941761-152942151
chr7	CG	SV	153784748	153786174	28	.	.	ID=3002;Type=deletion;Left=chr7:153784748-153785142+;Right=chr7:153786007-153786174+;Distance=1259;DiscordantMatePairAlignments=28;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=;LeftGenes=NM_001039350:+;NM_001936:+;NM_130797:+;RightGenes=NM_001039350:+;NM_001936:+;NM_130797:+;XRef=rs67517515 (chr7:153784744-153786003);Frequency=0.94
chr7	CG	SV	153784748	153785142	28	+	.	ID=3002;Type=deletion;Left=chr7:153784748-153785142;Right=chr7:153786007-153786174
chr7	CG	SV	153786007	153786174	28	+	.	ID=3002;Type=deletion;Left=chr7:153784748-153785142;Right=chr7:153786007-153786174
chr7	CG	SV	154507084	154511559	63	.	.	ID=1165;Type=distal-duplication;Left=chr7:154507084-154507485-;Right=chr7:154511059-154511559-;Distance=4074;DiscordantMatePairAlignments=63;LeftRepeat=;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=NM_024012:+;RightGenes=;XRef=;Frequency=0.35
chr7	CG	SV	154507084	154507485	63	-	.	ID=1165;Type=distal-duplication;Left=chr7:154507084-154507485;Right=chr7:154511059-154511559
chr7	CG	SV	154511059	154511559	63	-	.	ID=1165;Type=distal-duplication;Left=chr7:154507084-154507485;Right=chr7:154511059-154511559
chr7	CG	SV	154507932	154511735	30	.	.	ID=2998;Type=distal-duplication;Left=chr7:154507932-154508330+;Right=chr7:154511564-154511735+;Distance=3632;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=NM_024012:+;RightGenes=;XRef=;Frequency=0.29
chr7	CG	SV	154507932	154508330	30	+	.	ID=2998;Type=distal-duplication;Left=chr7:154507932-154508330;Right=chr7:154511564-154511735
chr7	CG	SV	154511564	154511735	30	+	.	ID=2998;Type=distal-duplication;Left=chr7:154507932-154508330;Right=chr7:154511564-154511735
chr7	CG	SV	154572865	154573533	13	.	.	ID=2996;Type=deletion;Left=chr7:154572865-154573254+;Right=chr7:154573194-154573533+;Distance=329;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67616333 (chr7:154572848-154573177);Frequency=0.94
chr7	CG	SV	154572865	154573254	13	+	.	ID=2996;Type=deletion;Left=chr7:154572865-154573254;Right=chr7:154573194-154573533
chr7	CG	SV	154573194	154573533	13	+	.	ID=2996;Type=deletion;Left=chr7:154572865-154573254;Right=chr7:154573194-154573533
chr7	CG	SV	157722236	157723683	183	.	.	ID=2994;Type=deletion;Left=chr7:157722236-157722743+;Right=chr7:157723210-157723683+;Distance=974;DiscordantMatePairAlignments=183;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_002847:-;NM_130842:-;NM_130843:-;RightGenes=NM_002847:-;NM_130842:-;NM_130843:-;XRef=rs67815723 (chr7:157722235-157723209);Frequency=0.94
chr7	CG	SV	157722236	157722743	183	+	.	ID=2994;Type=deletion;Left=chr7:157722236-157722743;Right=chr7:157723210-157723683
chr7	CG	SV	157723210	157723683	183	+	.	ID=2994;Type=deletion;Left=chr7:157722236-157722743;Right=chr7:157723210-157723683
chr7	CG	SV	157739405	157740548	122	.	.	ID=2993;Type=deletion;Left=chr7:157739405-157739910+;Right=chr7:157740148-157740548+;Distance=743;DiscordantMatePairAlignments=122;LeftRepeat=Self chain;Tandem period 74;RightRepeat=Self chain;Tandem period 74;LeftGenes=NM_002847:-;NM_130842:-;NM_130843:-;RightGenes=NM_002847:-;NM_130842:-;NM_130843:-;XRef=rs67809280 (chr7:157739419-157740162);Frequency=0.76
chr7	CG	SV	157739405	157739910	122	+	.	ID=2993;Type=deletion;Left=chr7:157739405-157739910;Right=chr7:157740148-157740548
chr7	CG	SV	157740148	157740548	122	+	.	ID=2993;Type=deletion;Left=chr7:157739405-157739910;Right=chr7:157740148-157740548
chr7	CG	SV	158080570	158080775	96	.	.	ID=1162;Type=tandem-duplication;Left=chr7:158080570-158080674-;Right=chr7:158080630-158080775-;Distance=101;DiscordantMatePairAlignments=96;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGG;Tandem period 9;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	158080570	158080674	96	-	.	ID=1162;Type=tandem-duplication;Left=chr7:158080570-158080674;Right=chr7:158080630-158080775
chr7	CG	SV	158080630	158080775	96	-	.	ID=1162;Type=tandem-duplication;Left=chr7:158080570-158080674;Right=chr7:158080630-158080775
chr7	CG	SV	158691741	158692756	14	.	.	ID=2988;Type=deletion;Left=chr7:158691741-158692008+;Right=chr7:158692632-158692756+;Distance=891;DiscordantMatePairAlignments=14;LeftRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;Tandem period 32;Tandem period 61;RightRepeat=Self chain;Tandem period 32;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr7	CG	SV	158691741	158692008	14	+	.	ID=2988;Type=deletion;Left=chr7:158691741-158692008;Right=chr7:158692632-158692756
chr7	CG	SV	158692632	158692756	14	+	.	ID=2988;Type=deletion;Left=chr7:158691741-158692008;Right=chr7:158692632-158692756
chr7	CG	SV	158802673	158817809	53	.	.	ID=2987;Type=deletion;Left=chr7:158802673-158803093+;Right=chr7:158817343-158817809+;Distance=14670;DiscordantMatePairAlignments=53;LeftRepeat=MER57A:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr7	CG	SV	158802673	158803093	53	+	.	ID=2987;Type=deletion;Left=chr7:158802673-158803093;Right=chr7:158817343-158817809
chr7	CG	SV	158817343	158817809	53	+	.	ID=2987;Type=deletion;Left=chr7:158802673-158803093;Right=chr7:158817343-158817809
chr8	CG	SV	584397	589876	115	.	.	ID=2986;Type=deletion;Left=chr8:584397-584831+;Right=chr8:589414-589876+;Distance=5017;DiscordantMatePairAlignments=115;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66630184 (chr8:584400-589414);Frequency=0.88
chr8	CG	SV	584397	584831	115	+	.	ID=2986;Type=deletion;Left=chr8:584397-584831;Right=chr8:589414-589876
chr8	CG	SV	589414	589876	115	+	.	ID=2986;Type=deletion;Left=chr8:584397-584831;Right=chr8:589414-589876
chr8	CG	SV	951194	955214	15	.	.	ID=2985;Type=deletion;Left=chr8:951194-951521+;Right=chr8:955049-955214+;Distance=3855;DiscordantMatePairAlignments=15;LeftRepeat=SegDup;Self chain;Tandem period 33;Tandem period 64;Tandem period 97;RightRepeat=Self chain;Tandem period 33;Tandem period 64;Tandem period 97;LeftGenes=;RightGenes=;XRef=rs71855433 (chr8:950994-954851);Frequency=0.35
chr8	CG	SV	951194	951521	15	+	.	ID=2985;Type=deletion;Left=chr8:951194-951521;Right=chr8:955049-955214
chr8	CG	SV	955049	955214	15	+	.	ID=2985;Type=deletion;Left=chr8:951194-951521;Right=chr8:955049-955214
chr8	CG	SV	1101425	1101752	13	.	.	ID=1160;Type=tandem-duplication;Left=chr8:1101425-1101567-;Right=chr8:1101608-1101752-;Distance=185;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 45;RightRepeat=Self chain;Tandem period 45;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr8	CG	SV	1101425	1101567	13	-	.	ID=1160;Type=tandem-duplication;Left=chr8:1101425-1101567;Right=chr8:1101608-1101752
chr8	CG	SV	1101608	1101752	13	-	.	ID=1160;Type=tandem-duplication;Left=chr8:1101425-1101567;Right=chr8:1101608-1101752
chr8	CG	SV	1733770	1734728	131	.	.	ID=2983;Type=deletion;Left=chr8:1733770-1734257+;Right=chr8:1734288-1734728+;Distance=518;DiscordantMatePairAlignments=131;LeftRepeat=Self chain;Tandem period 37;RightRepeat=Self chain;Tandem period 37;LeftGenes=;RightGenes=;XRef=rs71843993 (chr8:1733872-1734353);Frequency=0.88
chr8	CG	SV	1733770	1734257	131	+	.	ID=2983;Type=deletion;Left=chr8:1733770-1734257;Right=chr8:1734288-1734728
chr8	CG	SV	1734288	1734728	131	+	.	ID=2983;Type=deletion;Left=chr8:1733770-1734257;Right=chr8:1734288-1734728
chr8	CG	SV	2166339	2167106	15	.	.	ID=2981;Type=deletion;Left=chr8:2166339-2166787+;Right=chr8:2166662-2167106+;Distance=323;DiscordantMatePairAlignments=15;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71981345 (chr8:2166329-2166652);Frequency=0.12
chr8	CG	SV	2166339	2166787	15	+	.	ID=2981;Type=deletion;Left=chr8:2166339-2166787;Right=chr8:2166662-2167106
chr8	CG	SV	2166662	2167106	15	+	.	ID=2981;Type=deletion;Left=chr8:2166339-2166787;Right=chr8:2166662-2167106
chr8	CG	SV	2202860	2203854	42	.	.	ID=2980;Type=deletion;Left=chr8:2202860-2203328+;Right=chr8:2203556-2203854+;Distance=696;DiscordantMatePairAlignments=42;LeftRepeat=Self chain;Tandem period 87;RightRepeat=Self chain;Tandem period 87;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	2202860	2203328	42	+	.	ID=2980;Type=deletion;Left=chr8:2202860-2203328;Right=chr8:2203556-2203854
chr8	CG	SV	2203556	2203854	42	+	.	ID=2980;Type=deletion;Left=chr8:2202860-2203328;Right=chr8:2203556-2203854
chr8	CG	SV	3982289	3983323	25	.	.	ID=2979;Type=deletion;Left=chr8:3982289-3982765+;Right=chr8:3982746-3983323+;Distance=457;DiscordantMatePairAlignments=25;LeftRepeat=;RightRepeat=;LeftGenes=NM_033225:-;RightGenes=NM_033225:-;XRef=rs72243021 (chr8:3982289-3982746);Frequency=0.71
chr8	CG	SV	3982289	3982765	25	+	.	ID=2979;Type=deletion;Left=chr8:3982289-3982765;Right=chr8:3982746-3983323
chr8	CG	SV	3982746	3983323	25	+	.	ID=2979;Type=deletion;Left=chr8:3982289-3982765;Right=chr8:3982746-3983323
chr8	CG	SV	8423457	8424627	26	.	.	ID=2976;Type=deletion;Left=chr8:8423457-8423937+;Right=chr8:8424371-8424627+;Distance=914;DiscordantMatePairAlignments=26;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=FRAM:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72459952 (chr8:8423440-8424354);Frequency=0.82
chr8	CG	SV	8423457	8423937	26	+	.	ID=2976;Type=deletion;Left=chr8:8423457-8423937;Right=chr8:8424371-8424627
chr8	CG	SV	8424371	8424627	26	+	.	ID=2976;Type=deletion;Left=chr8:8423457-8423937;Right=chr8:8424371-8424627
chr8	CG	SV	11282970	11285037	71	.	.	ID=2974;Type=deletion;Left=chr8:11282970-11283424+;Right=chr8:11284619-11285037+;Distance=1649;DiscordantMatePairAlignments=71;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_026814:+;RightGenes=NR_026814:+;XRef=;Frequency=0.82
chr8	CG	SV	11282970	11283424	71	+	.	ID=2974;Type=deletion;Left=chr8:11282970-11283424;Right=chr8:11284619-11285037
chr8	CG	SV	11284619	11285037	71	+	.	ID=2974;Type=deletion;Left=chr8:11282970-11283424;Right=chr8:11284619-11285037
chr8	CG	SV	16866251	16867080	43	.	.	ID=2971;Type=deletion;Left=chr8:16866251-16866691+;Right=chr8:16866621-16867080+;Distance=370;DiscordantMatePairAlignments=43;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=ERVL-B4:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs10526511 (chr8:16866250-16866620);Frequency=0.59
chr8	CG	SV	16866251	16866691	43	+	.	ID=2971;Type=deletion;Left=chr8:16866251-16866691;Right=chr8:16866621-16867080
chr8	CG	SV	16866621	16867080	43	+	.	ID=2971;Type=deletion;Left=chr8:16866251-16866691;Right=chr8:16866621-16867080
chr8	CG	SV	18498900	18500614	54	.	.	ID=2969;Type=deletion;Left=chr8:18498900-18499384+;Right=chr8:18500233-18500614+;Distance=1333;DiscordantMatePairAlignments=54;LeftRepeat=L1HS:LINE:L1;L1M3:LINE:L1;RightRepeat=L1M3:LINE:L1;LeftGenes=NM_015310:-;NM_206909:-;RightGenes=NM_015310:-;NM_206909:-;XRef=rs71189488 (chr8:18498900-18500233);Frequency=1.00
chr8	CG	SV	18498900	18499384	54	+	.	ID=2969;Type=deletion;Left=chr8:18498900-18499384;Right=chr8:18500233-18500614
chr8	CG	SV	18500233	18500614	54	+	.	ID=2969;Type=deletion;Left=chr8:18498900-18499384;Right=chr8:18500233-18500614
chr8	CG	SV	18695738	18697117	137	.	.	ID=2968;Type=deletion;Left=chr8:18695738-18696080+;Right=chr8:18696712-18697117+;Distance=974;DiscordantMatePairAlignments=137;LeftRepeat=LTR5_Hs:LTR:ERVK;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=NM_015310:-;NM_206909:-;RightGenes=NM_015310:-;NM_206909:-;XRef=rs72416225 (chr8:18695738-18696712);Frequency=1.00
chr8	CG	SV	18695738	18696080	137	+	.	ID=2968;Type=deletion;Left=chr8:18695738-18696080;Right=chr8:18696712-18697117
chr8	CG	SV	18696712	18697117	137	+	.	ID=2968;Type=deletion;Left=chr8:18695738-18696080;Right=chr8:18696712-18697117
chr8	CG	SV	20987684	20988278	67	.	.	ID=2966;Type=deletion;Left=chr8:20987684-20988231+;Right=chr8:20988087-20988278+;Distance=403;DiscordantMatePairAlignments=67;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr8	CG	SV	20987684	20988231	67	+	.	ID=2966;Type=deletion;Left=chr8:20987684-20988231;Right=chr8:20988087-20988278
chr8	CG	SV	20988087	20988278	67	+	.	ID=2966;Type=deletion;Left=chr8:20987684-20988231;Right=chr8:20988087-20988278
chr8	CG	SV	25122602	25127037	142	.	.	ID=2964;Type=deletion;Left=chr8:25122602-25123034+;Right=chr8:25126576-25127037+;Distance=3974;DiscordantMatePairAlignments=142;LeftRepeat=;RightRepeat=;LeftGenes=NM_024940:+;RightGenes=NM_024940:+;XRef=rs67659343 (chr8:25122602-25126576);Frequency=1.00
chr8	CG	SV	25122602	25123034	142	+	.	ID=2964;Type=deletion;Left=chr8:25122602-25123034;Right=chr8:25126576-25127037
chr8	CG	SV	25126576	25127037	142	+	.	ID=2964;Type=deletion;Left=chr8:25122602-25123034;Right=chr8:25126576-25127037
chr8	CG	SV	30511833	30512579	17	.	.	ID=2962;Type=deletion;Left=chr8:30511833-30512299+;Right=chr8:30512137-30512579+;Distance=304;DiscordantMatePairAlignments=17;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001008710:+;NM_001008711:+;NM_001008712:+;NM_006867:+;RightGenes=NM_001008710:+;NM_001008711:+;NM_001008712:+;NM_006867:+;XRef=rs66968366 (chr8:30511833-30512137);Frequency=1.00
chr8	CG	SV	30511833	30512299	17	+	.	ID=2962;Type=deletion;Left=chr8:30511833-30512299;Right=chr8:30512137-30512579
chr8	CG	SV	30512137	30512579	17	+	.	ID=2962;Type=deletion;Left=chr8:30511833-30512299;Right=chr8:30512137-30512579
chr8	CG	SV	31690797	31691612	27	.	.	ID=2961;Type=deletion;Left=chr8:31690797-31691120+;Right=chr8:31691150-31691612+;Distance=353;DiscordantMatePairAlignments=27;LeftRepeat=AluYb8:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_013962:+;RightGenes=NM_013962:+;XRef=rs66662440 (chr8:31690797-31691150);Frequency=1.00
chr8	CG	SV	31690797	31691120	27	+	.	ID=2961;Type=deletion;Left=chr8:31690797-31691120;Right=chr8:31691150-31691612
chr8	CG	SV	31691150	31691612	27	+	.	ID=2961;Type=deletion;Left=chr8:31690797-31691120;Right=chr8:31691150-31691612
chr8	CG	SV	32799551	32811353	77	.	.	ID=2960;Type=deletion;Left=chr8:32799551-32799899+;Right=chr8:32810807-32811353+;Distance=11256;DiscordantMatePairAlignments=77;LeftRepeat=MLT1I:LTR:MaLR;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	32799551	32799899	77	+	.	ID=2960;Type=deletion;Left=chr8:32799551-32799899;Right=chr8:32810807-32811353
chr8	CG	SV	32810807	32811353	77	+	.	ID=2960;Type=deletion;Left=chr8:32799551-32799899;Right=chr8:32810807-32811353
chr8	CG	SV	37170038	37171509	153	.	.	ID=2959;Type=deletion;Left=chr8:37170038-37170432+;Right=chr8:37171012-37171509+;Distance=974;DiscordantMatePairAlignments=153;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67176554 (chr8:37170037-37171011);Frequency=1.00
chr8	CG	SV	37170038	37170432	153	+	.	ID=2959;Type=deletion;Left=chr8:37170038-37170432;Right=chr8:37171012-37171509
chr8	CG	SV	37171012	37171509	153	+	.	ID=2959;Type=deletion;Left=chr8:37170038-37170432;Right=chr8:37171012-37171509
chr8	CG	SV	39351231	39506622	30	.	.	ID=2958;Type=deletion;Left=chr8:39351231-39351585+;Right=chr8:39506385-39506622+;Distance=155154;DiscordantMatePairAlignments=30;LeftRepeat=AluY:SINE:Alu;RightRepeat=L1ME2:LINE:L1;Self chain;LeftGenes=NR_001448:+;RightGenes=;XRef=;Frequency=0.71
chr8	CG	SV	39351231	39351585	30	+	.	ID=2958;Type=deletion;Left=chr8:39351231-39351585;Right=chr8:39506385-39506622
chr8	CG	SV	39506385	39506622	30	+	.	ID=2958;Type=deletion;Left=chr8:39351231-39351585;Right=chr8:39506385-39506622
chr8	CG	SV	42309626	42313899	22	.	.	ID=2955;Type=deletion;Left=chr8:42309626-42310066+;Right=chr8:42313589-42313899+;Distance=3963;DiscordantMatePairAlignments=22;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71199212 (chr8:42309596-42313559);Frequency=1.00
chr8	CG	SV	42309626	42310066	22	+	.	ID=2955;Type=deletion;Left=chr8:42309626-42310066;Right=chr8:42313589-42313899
chr8	CG	SV	42313589	42313899	22	+	.	ID=2955;Type=deletion;Left=chr8:42309626-42310066;Right=chr8:42313589-42313899
chr8	CG	SV	58278418	58285598	115	.	.	ID=1152;Type=complex;Left=chr8:58278418-58278874-;Right=chr8:58285179-58285598-;Distance=6724;DiscordantMatePairAlignments=115;LeftRepeat=MER50:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58278418	58278874	115	-	.	ID=1152;Type=complex;Left=chr8:58278418-58278874;Right=chr8:58285179-58285598
chr8	CG	SV	58285179	58285598	115	-	.	ID=1152;Type=complex;Left=chr8:58278418-58278874;Right=chr8:58285179-58285598
chr8	CG	SV	58279452	58281141	89	.	.	ID=2947;Type=complex;Left=chr8:58279452-58279922+;Right=chr8:58280826-58281141+;Distance=1374;DiscordantMatePairAlignments=89;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58279452	58279922	89	+	.	ID=2947;Type=complex;Left=chr8:58279452-58279922;Right=chr8:58280826-58281141
chr8	CG	SV	58280826	58281141	89	+	.	ID=2947;Type=complex;Left=chr8:58279452-58279922;Right=chr8:58280826-58281141
chr8	CG	SV	58280641	58296674	15	.	.	ID=1150;Type=complex;Left=chr8:58280641-58280822-;Right=chr8:58296464-58296674-;Distance=15852;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.05
chr8	CG	SV	58280641	58280822	15	-	.	ID=1150;Type=complex;Left=chr8:58280641-58280822;Right=chr8:58296464-58296674
chr8	CG	SV	58296464	58296674	15	-	.	ID=1150;Type=complex;Left=chr8:58280641-58280822;Right=chr8:58296464-58296674
chr8	CG	SV	58280391	58290572	129	.	.	ID=1151;Type=complex;Left=chr8:58280391-58280822-;Right=chr8:58290206-58290572-;Distance=9750;DiscordantMatePairAlignments=129;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58280391	58280822	129	-	.	ID=1151;Type=complex;Left=chr8:58280391-58280822;Right=chr8:58290206-58290572
chr8	CG	SV	58290206	58290572	129	-	.	ID=1151;Type=complex;Left=chr8:58280391-58280822;Right=chr8:58290206-58290572
chr8	CG	SV	58285605	58290513	434	.	.	ID=2946;Type=complex;Left=chr8:58285605-58286047+;Right=chr8:58289986-58290513+;Distance=4381;DiscordantMatePairAlignments=434;LeftRepeat=Self chain;RightRepeat=MER50:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58285605	58286047	434	+	.	ID=2946;Type=complex;Left=chr8:58285605-58286047;Right=chr8:58289986-58290513
chr8	CG	SV	58289986	58290513	434	+	.	ID=2946;Type=complex;Left=chr8:58285605-58286047;Right=chr8:58289986-58290513
chr8	CG	SV	58334577	58335455	40	.	.	ID=1149;Type=tandem-duplication;Left=chr8:58334577-58334985-;Right=chr8:58335069-58335455-;Distance=470;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr8	CG	SV	58334577	58334985	40	-	.	ID=1149;Type=tandem-duplication;Left=chr8:58334577-58334985;Right=chr8:58335069-58335455
chr8	CG	SV	58335069	58335455	40	-	.	ID=1149;Type=tandem-duplication;Left=chr8:58334577-58334985;Right=chr8:58335069-58335455
chr8	CG	SV	61367551	61368306	30	.	.	ID=2944;Type=deletion;Left=chr8:61367551-61368033+;Right=chr8:61367868-61368306+;Distance=317;DiscordantMatePairAlignments=30;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs33938822 (chr8:61367551-61367868);Frequency=0.76
chr8	CG	SV	61367551	61368033	30	+	.	ID=2944;Type=deletion;Left=chr8:61367551-61368033;Right=chr8:61367868-61368306
chr8	CG	SV	61367868	61368306	30	+	.	ID=2944;Type=deletion;Left=chr8:61367551-61368033;Right=chr8:61367868-61368306
chr8	CG	SV	62197914	62198814	51	.	.	ID=2943;Type=deletion;Left=chr8:62197914-62198417+;Right=chr8:62198446-62198814+;Distance=532;DiscordantMatePairAlignments=51;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr8	CG	SV	62197914	62198417	51	+	.	ID=2943;Type=deletion;Left=chr8:62197914-62198417;Right=chr8:62198446-62198814
chr8	CG	SV	62198446	62198814	51	+	.	ID=2943;Type=deletion;Left=chr8:62197914-62198417;Right=chr8:62198446-62198814
chr8	CG	SV	72713972	72714751	12	.	.	ID=2927;Type=deletion;Left=chr8:72713972-72714395+;Right=chr8:72714306-72714751+;Distance=334;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67424486 (chr8:72713972-72714306);Frequency=0.94
chr8	CG	SV	72713972	72714395	12	+	.	ID=2927;Type=deletion;Left=chr8:72713972-72714395;Right=chr8:72714306-72714751
chr8	CG	SV	72714306	72714751	12	+	.	ID=2927;Type=deletion;Left=chr8:72713972-72714395;Right=chr8:72714306-72714751
chr8	CG	SV	73950329	73956780	81	.	.	ID=2926;Type=deletion;Left=chr8:73950329-73950754+;Right=chr8:73956387-73956780+;Distance=6058;DiscordantMatePairAlignments=81;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_004770:+;RightGenes=NM_004770:+;XRef=rs71640573 (chr8:73950319-73956377);Frequency=1.00
chr8	CG	SV	73950329	73950754	81	+	.	ID=2926;Type=deletion;Left=chr8:73950329-73950754;Right=chr8:73956387-73956780
chr8	CG	SV	73956387	73956780	81	+	.	ID=2926;Type=deletion;Left=chr8:73950329-73950754;Right=chr8:73956387-73956780
chr8	CG	SV	75525426	75529990	48	.	.	ID=2924;Type=deletion;Left=chr8:75525426-75525800+;Right=chr8:75529517-75529990+;Distance=4091;DiscordantMatePairAlignments=48;LeftRepeat=L1MEb:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr8	CG	SV	75525426	75525800	48	+	.	ID=2924;Type=deletion;Left=chr8:75525426-75525800;Right=chr8:75529517-75529990
chr8	CG	SV	75529517	75529990	48	+	.	ID=2924;Type=deletion;Left=chr8:75525426-75525800;Right=chr8:75529517-75529990
chr8	CG	SV	76289457	76290191	13	.	.	ID=2923;Type=deletion;Left=chr8:76289457-76289861+;Right=chr8:76289781-76290191+;Distance=324;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6150663 (chr8:76289457-76289781);Frequency=0.71
chr8	CG	SV	76289457	76289861	13	+	.	ID=2923;Type=deletion;Left=chr8:76289457-76289861;Right=chr8:76289781-76290191
chr8	CG	SV	76289781	76290191	13	+	.	ID=2923;Type=deletion;Left=chr8:76289457-76289861;Right=chr8:76289781-76290191
chr8	CG	SV	77499940	77501508	114	.	.	ID=2922;Type=deletion;Left=chr8:77499940-77500422+;Right=chr8:77500985-77501508+;Distance=1045;DiscordantMatePairAlignments=114;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66858940 (chr8:77499940-77500985);Frequency=0.94
chr8	CG	SV	77499940	77500422	114	+	.	ID=2922;Type=deletion;Left=chr8:77499940-77500422;Right=chr8:77500985-77501508
chr8	CG	SV	77500985	77501508	114	+	.	ID=2922;Type=deletion;Left=chr8:77499940-77500422;Right=chr8:77500985-77501508
chr8	CG	SV	83347925	84877117	11	.	.	ID=4498;Type=probable-inversion;Left=chr8:83347925-83348541+;Right=chr8:84876624-84877117-;Distance=1529192;DiscordantMatePairAlignments=11;LeftRepeat=L1MA1:LINE:L1;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	83347925	83348541	11	+	.	ID=4498;Type=probable-inversion;Left=chr8:83347925-83348541;Right=chr8:84876624-84877117
chr8	CG	SV	84876624	84877117	11	+	.	ID=4498;Type=probable-inversion;Left=chr8:83347925-83348541;Right=chr8:84876624-84877117
chr8	CG	SV	97167264	97168138	46	.	.	ID=2917;Type=deletion;Left=chr8:97167264-97167721+;Right=chr8:97167616-97168138+;Distance=352;DiscordantMatePairAlignments=46;LeftRepeat=AluY:SINE:Alu;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs10528502 (chr8:97167264-97167616);Frequency=1.00
chr8	CG	SV	97167264	97167721	46	+	.	ID=2917;Type=deletion;Left=chr8:97167264-97167721;Right=chr8:97167616-97168138
chr8	CG	SV	97167616	97168138	46	+	.	ID=2917;Type=deletion;Left=chr8:97167264-97167721;Right=chr8:97167616-97168138
chr8	CG	SV	98664585	98665362	14	.	.	ID=2916;Type=deletion;Left=chr8:98664585-98665008+;Right=chr8:98664924-98665362+;Distance=339;DiscordantMatePairAlignments=14;LeftRepeat=Tandem T;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=rs35122468 (chr8:98664585-98664924);Frequency=1.00
chr8	CG	SV	98664585	98665008	14	+	.	ID=2916;Type=deletion;Left=chr8:98664585-98665008;Right=chr8:98664924-98665362
chr8	CG	SV	98664924	98665362	14	+	.	ID=2916;Type=deletion;Left=chr8:98664585-98665008;Right=chr8:98664924-98665362
chr8	CG	SV	99534453	99534999	13	.	.	ID=2914;Type=deletion;Left=chr8:99534453-99534913+;Right=chr8:99534779-99534999+;Distance=326;DiscordantMatePairAlignments=13;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72417640 (chr8:99534316-99534644);Frequency=0.65
chr8	CG	SV	99534453	99534913	13	+	.	ID=2914;Type=deletion;Left=chr8:99534453-99534913;Right=chr8:99534779-99534999
chr8	CG	SV	99534779	99534999	13	+	.	ID=2914;Type=deletion;Left=chr8:99534453-99534913;Right=chr8:99534779-99534999
chr8	CG	SV	106739710	106740379	15	.	.	ID=2912;Type=deletion;Left=chr8:106739710-106740166+;Right=chr8:106740030-106740379+;Distance=320;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_012082:+;RightGenes=NM_012082:+;XRef=rs35898367 (chr8:106739694-106740014);Frequency=0.53
chr8	CG	SV	106739710	106740166	15	+	.	ID=2912;Type=deletion;Left=chr8:106739710-106740166;Right=chr8:106740030-106740379
chr8	CG	SV	106740030	106740379	15	+	.	ID=2912;Type=deletion;Left=chr8:106739710-106740166;Right=chr8:106740030-106740379
chr8	CG	SV	108189410	108190152	28	.	.	ID=2909;Type=deletion;Left=chr8:108189410-108189822+;Right=chr8:108189732-108190152+;Distance=322;DiscordantMatePairAlignments=28;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67681243 (chr8:108189391-108189713);Frequency=1.00
chr8	CG	SV	108189410	108189822	28	+	.	ID=2909;Type=deletion;Left=chr8:108189410-108189822;Right=chr8:108189732-108190152
chr8	CG	SV	108189732	108190152	28	+	.	ID=2909;Type=deletion;Left=chr8:108189410-108189822;Right=chr8:108189732-108190152
chr8	CG	SV	108638469	108638540	23	.	.	ID=4496;Type=probable-inversion;Left=chr8:108638469-108638897+;Right=chr8:108638466-108638540-;Distance=71;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	108638469	108638897	23	+	.	ID=4496;Type=probable-inversion;Left=chr8:108638469-108638897;Right=chr8:108638466-108638540
chr8	CG	SV	108638466	108638540	23	+	.	ID=4496;Type=probable-inversion;Left=chr8:108638469-108638897;Right=chr8:108638466-108638540
chr8	CG	SV	112237412	112238156	10	.	.	ID=2906;Type=deletion;Left=chr8:112237412-112237798+;Right=chr8:112237870-112238156+;Distance=458;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71199245 (chr8:112237414-112237767);Frequency=0.94
chr8	CG	SV	112237412	112237798	10	+	.	ID=2906;Type=deletion;Left=chr8:112237412-112237798;Right=chr8:112237870-112238156
chr8	CG	SV	112237870	112238156	10	+	.	ID=2906;Type=deletion;Left=chr8:112237412-112237798;Right=chr8:112237870-112238156
chr8	CG	SV	112363228	112366724	41	.	.	ID=2905;Type=deletion;Left=chr8:112363228-112363568+;Right=chr8:112366316-112366724+;Distance=3088;DiscordantMatePairAlignments=41;LeftRepeat=;RightRepeat=MLT-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67753424 (chr8:112363228-112366316);Frequency=0.88
chr8	CG	SV	112363228	112363568	41	+	.	ID=2905;Type=deletion;Left=chr8:112363228-112363568;Right=chr8:112366316-112366724
chr8	CG	SV	112366316	112366724	41	+	.	ID=2905;Type=deletion;Left=chr8:112363228-112363568;Right=chr8:112366316-112366724
chr8	CG	SV	113154612	113155436	44	.	.	ID=2904;Type=deletion;Left=chr8:113154612-113155005+;Right=chr8:113154942-113155436+;Distance=330;DiscordantMatePairAlignments=44;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=L1M2:LINE:L1;LeftGenes=;RightGenes=;XRef=rs6150764 (chr8:113154612-113154942);Frequency=1.00
chr8	CG	SV	113154612	113155005	44	+	.	ID=2904;Type=deletion;Left=chr8:113154612-113155005;Right=chr8:113154942-113155436
chr8	CG	SV	113154942	113155436	44	+	.	ID=2904;Type=deletion;Left=chr8:113154612-113155005;Right=chr8:113154942-113155436
chr8	CG	SV	113295038	113295797	11	.	.	ID=2903;Type=deletion;Left=chr8:113295038-113295473+;Right=chr8:113295381-113295797+;Distance=343;DiscordantMatePairAlignments=11;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35396252 (chr8:113295038-113295381);Frequency=0.88
chr8	CG	SV	113295038	113295473	11	+	.	ID=2903;Type=deletion;Left=chr8:113295038-113295473;Right=chr8:113295381-113295797
chr8	CG	SV	113295381	113295797	11	+	.	ID=2903;Type=deletion;Left=chr8:113295038-113295473;Right=chr8:113295381-113295797
chr8	CG	SV	118942919	118945081	57	.	.	ID=2900;Type=complex;Left=chr8:118942919-118943223+;Right=chr8:118944774-118945081+;Distance=1855;DiscordantMatePairAlignments=57;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_000127:-;RightGenes=NM_000127:-;XRef=;Frequency=0.59
chr8	CG	SV	118942919	118943223	57	+	.	ID=2900;Type=complex;Left=chr8:118942919-118943223;Right=chr8:118944774-118945081
chr8	CG	SV	118944774	118945081	57	+	.	ID=2900;Type=complex;Left=chr8:118942919-118943223;Right=chr8:118944774-118945081
chr8	CG	SV	118944279	118945194	26	.	.	ID=311;Type=complex;Left=chr8:118944279-118944399-;Right=chr8:118944778-118945194+;Distance=379;DiscordantMatePairAlignments=26;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_000127:-;RightGenes=NM_000127:-;XRef=;Frequency=0.65
chr8	CG	SV	118944279	118944399	26	-	.	ID=311;Type=complex;Left=chr8:118944279-118944399;Right=chr8:118944778-118945194
chr8	CG	SV	118944778	118945194	26	-	.	ID=311;Type=complex;Left=chr8:118944279-118944399;Right=chr8:118944778-118945194
chr8	CG	SV	121603338	121604044	12	.	.	ID=2898;Type=deletion;Left=chr8:121603338-121603696+;Right=chr8:121603800-121604044+;Distance=462;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem period 42;RightRepeat=Self chain;LeftGenes=NM_022045:+;RightGenes=NM_022045:+;XRef=rs71306889 (chr8:121603332-121603607);Frequency=1.00
chr8	CG	SV	121603338	121603696	12	+	.	ID=2898;Type=deletion;Left=chr8:121603338-121603696;Right=chr8:121603800-121604044
chr8	CG	SV	121603800	121604044	12	+	.	ID=2898;Type=deletion;Left=chr8:121603338-121603696;Right=chr8:121603800-121604044
chr8	CG	SV	121750866	121751662	26	.	.	ID=2896;Type=deletion;Left=chr8:121750866-121751212+;Right=chr8:121751185-121751662+;Distance=319;DiscordantMatePairAlignments=26;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MER5A1:DNA:MER1_type;LeftGenes=NM_021021:-;RightGenes=NM_021021:-;XRef=rs67216429 (chr8:121750866-121751185);Frequency=0.65
chr8	CG	SV	121750866	121751212	26	+	.	ID=2896;Type=deletion;Left=chr8:121750866-121751212;Right=chr8:121751185-121751662
chr8	CG	SV	121751185	121751662	26	+	.	ID=2896;Type=deletion;Left=chr8:121750866-121751212;Right=chr8:121751185-121751662
chr8	CG	SV	121923940	121924692	13	.	.	ID=2895;Type=deletion;Left=chr8:121923940-121924322+;Right=chr8:121924258-121924692+;Distance=318;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6469957 (chr8:121923941-121924259);Frequency=0.65
chr8	CG	SV	121923940	121924322	13	+	.	ID=2895;Type=deletion;Left=chr8:121923940-121924322;Right=chr8:121924258-121924692
chr8	CG	SV	121924258	121924692	13	+	.	ID=2895;Type=deletion;Left=chr8:121923940-121924322;Right=chr8:121924258-121924692
chr8	CG	SV	126405999	126406793	11	.	.	ID=2893;Type=deletion;Left=chr8:126405999-126406418+;Right=chr8:126406316-126406793+;Distance=317;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;RightRepeat=L1ME1:LINE:L1;LeftGenes=NM_173685:+;RightGenes=NM_173685:+;XRef=rs71199254 (chr8:126405999-126406316);Frequency=0.65
chr8	CG	SV	126405999	126406418	11	+	.	ID=2893;Type=deletion;Left=chr8:126405999-126406418;Right=chr8:126406316-126406793
chr8	CG	SV	126406316	126406793	11	+	.	ID=2893;Type=deletion;Left=chr8:126405999-126406418;Right=chr8:126406316-126406793
chr8	CG	SV	126664308	126670769	224	.	.	ID=2892;Type=deletion;Left=chr8:126664308-126664790+;Right=chr8:126670321-126670769+;Distance=6013;DiscordantMatePairAlignments=224;LeftRepeat=;RightRepeat=MER113:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs67657993 (chr8:126664311-126670324);Frequency=1.00
chr8	CG	SV	126664308	126664790	224	+	.	ID=2892;Type=deletion;Left=chr8:126664308-126664790;Right=chr8:126670321-126670769
chr8	CG	SV	126670321	126670769	224	+	.	ID=2892;Type=deletion;Left=chr8:126664308-126664790;Right=chr8:126670321-126670769
chr8	CG	SV	127261392	127264358	42	.	.	ID=2891;Type=deletion;Left=chr8:127261392-127262008+;Right=chr8:127263756-127264358+;Distance=2364;DiscordantMatePairAlignments=42;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72273669 (chr8:127261387-127263752);Frequency=0.59
chr8	CG	SV	127261392	127262008	42	+	.	ID=2891;Type=deletion;Left=chr8:127261392-127262008;Right=chr8:127263756-127264358
chr8	CG	SV	127263756	127264358	42	+	.	ID=2891;Type=deletion;Left=chr8:127261392-127262008;Right=chr8:127263756-127264358
chr8	CG	SV	129534343	129540882	187	.	.	ID=2890;Type=deletion;Left=chr8:129534343-129534816+;Right=chr8:129540456-129540882+;Distance=6113;DiscordantMatePairAlignments=187;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68030911 (chr8:129534350-129540463);Frequency=1.00
chr8	CG	SV	129534343	129534816	187	+	.	ID=2890;Type=deletion;Left=chr8:129534343-129534816;Right=chr8:129540456-129540882
chr8	CG	SV	129540456	129540882	187	+	.	ID=2890;Type=deletion;Left=chr8:129534343-129534816;Right=chr8:129540456-129540882
chr8	CG	SV	131919931	131922373	91	.	.	ID=2888;Type=deletion;Left=chr8:131919931-131920384+;Right=chr8:131921917-131922373+;Distance=1986;DiscordantMatePairAlignments=91;LeftRepeat=;RightRepeat=;LeftGenes=NM_001115:-;RightGenes=NM_001115:-;XRef=rs71812592 (chr8:131919932-131921920);Frequency=0.47
chr8	CG	SV	131919931	131920384	91	+	.	ID=2888;Type=deletion;Left=chr8:131919931-131920384;Right=chr8:131921917-131922373
chr8	CG	SV	131921917	131922373	91	+	.	ID=2888;Type=deletion;Left=chr8:131919931-131920384;Right=chr8:131921917-131922373
chr8	CG	SV	131978719	131979821	10	.	.	ID=310;Type=probable-inversion;Left=chr8:131978719-131979118-;Right=chr8:131979750-131979821+;Distance=632;DiscordantMatePairAlignments=10;LeftRepeat=Tandem period 8;RightRepeat=;LeftGenes=NM_001115:-;RightGenes=NM_001115:-;XRef=;Frequency=0.94
chr8	CG	SV	131978719	131979118	10	-	.	ID=310;Type=probable-inversion;Left=chr8:131978719-131979118;Right=chr8:131979750-131979821
chr8	CG	SV	131979750	131979821	10	-	.	ID=310;Type=probable-inversion;Left=chr8:131978719-131979118;Right=chr8:131979750-131979821
chr8	CG	SV	135152111	135158696	40	.	.	ID=2886;Type=deletion;Left=chr8:135152111-135152476+;Right=chr8:135158213-135158696+;Distance=6102;DiscordantMatePairAlignments=40;LeftRepeat=L1MEe:LINE:L1;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66697932 (chr8:135152111-135158213);Frequency=0.53
chr8	CG	SV	135152111	135152476	40	+	.	ID=2886;Type=deletion;Left=chr8:135152111-135152476;Right=chr8:135158213-135158696
chr8	CG	SV	135158213	135158696	40	+	.	ID=2886;Type=deletion;Left=chr8:135152111-135152476;Right=chr8:135158213-135158696
chr8	CG	SV	137229379	137233543	103	.	.	ID=2885;Type=deletion;Left=chr8:137229379-137229846+;Right=chr8:137233082-137233543+;Distance=3703;DiscordantMatePairAlignments=103;LeftRepeat=ERVL-E:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67361622 (chr8:137229377-137233080);Frequency=1.00
chr8	CG	SV	137229379	137229846	103	+	.	ID=2885;Type=deletion;Left=chr8:137229379-137229846;Right=chr8:137233082-137233543
chr8	CG	SV	137233082	137233543	103	+	.	ID=2885;Type=deletion;Left=chr8:137229379-137229846;Right=chr8:137233082-137233543
chr8	CG	SV	138812149	138813445	132	.	.	ID=2884;Type=deletion;Left=chr8:138812149-138812639+;Right=chr8:138813045-138813445+;Distance=896;DiscordantMatePairAlignments=132;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67866144 (chr8:138812147-138813043);Frequency=1.00
chr8	CG	SV	138812149	138812639	132	+	.	ID=2884;Type=deletion;Left=chr8:138812149-138812639;Right=chr8:138813045-138813445
chr8	CG	SV	138813045	138813445	132	+	.	ID=2884;Type=deletion;Left=chr8:138812149-138812639;Right=chr8:138813045-138813445
chr8	CG	SV	143395366	143396944	20	.	.	ID=2881;Type=deletion;Left=chr8:143395366-143395696+;Right=chr8:143396564-143396944+;Distance=1198;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 36;Tandem period 72;LeftGenes=NM_145003:-;RightGenes=NM_145003:-;XRef=;Frequency=0.00
chr8	CG	SV	143395366	143395696	20	+	.	ID=2881;Type=deletion;Left=chr8:143395366-143395696;Right=chr8:143396564-143396944
chr8	CG	SV	143396564	143396944	20	+	.	ID=2881;Type=deletion;Left=chr8:143395366-143395696;Right=chr8:143396564-143396944
chr8	CG	SV	144127861	144128761	26	.	.	ID=2880;Type=deletion;Left=chr8:144127861-144128073+;Right=chr8:144128541-144128761+;Distance=680;DiscordantMatePairAlignments=26;LeftRepeat=(CAGGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 15;Tandem period 31;Tandem period 46;RightRepeat=Self chain;Tandem period 15;Tandem period 31;Tandem period 46;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr8	CG	SV	144127861	144128073	26	+	.	ID=2880;Type=deletion;Left=chr8:144127861-144128073;Right=chr8:144128541-144128761
chr8	CG	SV	144128541	144128761	26	+	.	ID=2880;Type=deletion;Left=chr8:144127861-144128073;Right=chr8:144128541-144128761
chr8	CG	SV	144705210	144707791	95	.	.	ID=2879;Type=deletion;Left=chr8:144705210-144705645+;Right=chr8:144707385-144707791+;Distance=2175;DiscordantMatePairAlignments=95;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=NM_001166237:+;XRef=;Frequency=0.18
chr8	CG	SV	144705210	144705645	95	+	.	ID=2879;Type=deletion;Left=chr8:144705210-144705645;Right=chr8:144707385-144707791
chr8	CG	SV	144707385	144707791	95	+	.	ID=2879;Type=deletion;Left=chr8:144705210-144705645;Right=chr8:144707385-144707791
chr8	CG	SV	144794759	144795612	16	.	.	ID=2878;Type=deletion;Left=chr8:144794759-144795102+;Right=chr8:144795091-144795612+;Distance=332;DiscordantMatePairAlignments=16;LeftRepeat=Tandem T;Tigger1:DNA:MER2_type;RightRepeat=Tigger1:DNA:MER2_type;LeftGenes=NM_001082480:+;RightGenes=NM_001082480:+;XRef=rs71200693 (chr8:144794759-144795091);Frequency=1.00
chr8	CG	SV	144794759	144795102	16	+	.	ID=2878;Type=deletion;Left=chr8:144794759-144795102;Right=chr8:144795091-144795612
chr8	CG	SV	144795091	144795612	16	+	.	ID=2878;Type=deletion;Left=chr8:144794759-144795102;Right=chr8:144795091-144795612
chr8	CG	SV	146027877	146029025	14	.	.	ID=2877;Type=deletion;Left=chr8:146027877-146028216+;Right=chr8:146028688-146029025+;Distance=811;DiscordantMatePairAlignments=14;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_003416:+;RightGenes=NM_003416:+;XRef=rs71976446 (chr8:146027825-146028636);Frequency=0.82
chr8	CG	SV	146027877	146028216	14	+	.	ID=2877;Type=deletion;Left=chr8:146027877-146028216;Right=chr8:146028688-146029025
chr8	CG	SV	146028688	146029025	14	+	.	ID=2877;Type=deletion;Left=chr8:146027877-146028216;Right=chr8:146028688-146029025
chr9	CG	SV	3770632	3771381	11	.	.	ID=2875;Type=deletion;Left=chr9:3770632-3771092+;Right=chr9:3770958-3771381+;Distance=326;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71315277 (chr9:3770632-3770958);Frequency=1.00
chr9	CG	SV	3770632	3771092	11	+	.	ID=2875;Type=deletion;Left=chr9:3770632-3771092;Right=chr9:3770958-3771381
chr9	CG	SV	3770958	3771381	11	+	.	ID=2875;Type=deletion;Left=chr9:3770632-3771092;Right=chr9:3770958-3771381
chr9	CG	SV	4336671	4337317	12	.	.	ID=2874;Type=deletion;Left=chr9:4336671-4337132+;Right=chr9:4336982-4337317+;Distance=311;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35033676 (chr9:4336658-4336969);Frequency=1.00
chr9	CG	SV	4336671	4337132	12	+	.	ID=2874;Type=deletion;Left=chr9:4336671-4337132;Right=chr9:4336982-4337317
chr9	CG	SV	4336982	4337317	12	+	.	ID=2874;Type=deletion;Left=chr9:4336671-4337132;Right=chr9:4336982-4337317
chr9	CG	SV	4366421	4368041	104	.	.	ID=2873;Type=deletion;Left=chr9:4366421-4366813+;Right=chr9:4367648-4368041+;Distance=1227;DiscordantMatePairAlignments=104;LeftRepeat=;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr9	CG	SV	4366421	4366813	104	+	.	ID=2873;Type=deletion;Left=chr9:4366421-4366813;Right=chr9:4367648-4368041
chr9	CG	SV	4367648	4368041	104	+	.	ID=2873;Type=deletion;Left=chr9:4366421-4366813;Right=chr9:4367648-4368041
chr9	CG	SV	10394564	10395481	97	.	.	ID=2870;Type=deletion;Left=chr9:10394564-10394984+;Right=chr9:10395094-10395481+;Distance=530;DiscordantMatePairAlignments=97;LeftRepeat=;RightRepeat=;LeftGenes=NM_001040712:-;NM_002839:-;NM_130391:-;NM_130392:-;NM_130393:-;RightGenes=NM_001040712:-;NM_002839:-;NM_130391:-;NM_130392:-;NM_130393:-;XRef=rs71315285 (chr9:10394564-10395094);Frequency=1.00
chr9	CG	SV	10394564	10394984	97	+	.	ID=2870;Type=deletion;Left=chr9:10394564-10394984;Right=chr9:10395094-10395481
chr9	CG	SV	10395094	10395481	97	+	.	ID=2870;Type=deletion;Left=chr9:10394564-10394984;Right=chr9:10395094-10395481
chr9	CG	SV	10488752	10489531	11	.	.	ID=2869;Type=deletion;Left=chr9:10488752-10489186+;Right=chr9:10489062-10489531+;Distance=310;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001040712:-;NM_002839:-;NM_130391:-;NM_130392:-;NM_130393:-;RightGenes=NM_001040712:-;NM_002839:-;NM_130391:-;NM_130392:-;NM_130393:-;XRef=rs6150916 (chr9:10488740-10489050);Frequency=1.00
chr9	CG	SV	10488752	10489186	11	+	.	ID=2869;Type=deletion;Left=chr9:10488752-10489186;Right=chr9:10489062-10489531
chr9	CG	SV	10489062	10489531	11	+	.	ID=2869;Type=deletion;Left=chr9:10488752-10489186;Right=chr9:10489062-10489531
chr9	CG	SV	11423120	11423791	10	.	.	ID=2868;Type=deletion;Left=chr9:11423120-11423551+;Right=chr9:11423435-11423791+;Distance=315;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr9	CG	SV	11423120	11423551	10	+	.	ID=2868;Type=deletion;Left=chr9:11423120-11423551;Right=chr9:11423435-11423791
chr9	CG	SV	11423435	11423791	10	+	.	ID=2868;Type=deletion;Left=chr9:11423120-11423551;Right=chr9:11423435-11423791
chr9	CG	SV	15805308	15812305	19	.	.	ID=2867;Type=deletion;Left=chr9:15805308-15805705+;Right=chr9:15811942-15812305+;Distance=6634;DiscordantMatePairAlignments=19;LeftRepeat=;RightRepeat=L1PA4:LINE:L1;LeftGenes=NM_173550:+;RightGenes=NM_173550:+;XRef=;Frequency=0.65
chr9	CG	SV	15805308	15805705	19	+	.	ID=2867;Type=deletion;Left=chr9:15805308-15805705;Right=chr9:15811942-15812305
chr9	CG	SV	15811942	15812305	19	+	.	ID=2867;Type=deletion;Left=chr9:15805308-15805705;Right=chr9:15811942-15812305
chr9	CG	SV	16379407	16380340	41	.	.	ID=2865;Type=deletion;Left=chr9:16379407-16379778+;Right=chr9:16379743-16380340+;Distance=336;DiscordantMatePairAlignments=41;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35533078 (chr9:16379407-16379743);Frequency=1.00
chr9	CG	SV	16379407	16379778	41	+	.	ID=2865;Type=deletion;Left=chr9:16379407-16379778;Right=chr9:16379743-16380340
chr9	CG	SV	16379743	16380340	41	+	.	ID=2865;Type=deletion;Left=chr9:16379407-16379778;Right=chr9:16379743-16380340
chr9	CG	SV	18741842	18742519	14	.	.	ID=2862;Type=deletion;Left=chr9:18741842-18742390+;Right=chr9:18742132-18742519+;Distance=290;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001040272:+;RightGenes=NM_001040272:+;XRef=rs6150940 (chr9:18741826-18742116);Frequency=1.00
chr9	CG	SV	18741842	18742390	14	+	.	ID=2862;Type=deletion;Left=chr9:18741842-18742390;Right=chr9:18742132-18742519
chr9	CG	SV	18742132	18742519	14	+	.	ID=2862;Type=deletion;Left=chr9:18741842-18742390;Right=chr9:18742132-18742519
chr9	CG	SV	22989503	22990283	37	.	.	ID=2861;Type=deletion;Left=chr9:22989503-22990033+;Right=chr9:22989835-22990283+;Distance=332;DiscordantMatePairAlignments=37;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67654271 (chr9:22989487-22989819);Frequency=1.00
chr9	CG	SV	22989503	22990033	37	+	.	ID=2861;Type=deletion;Left=chr9:22989503-22990033;Right=chr9:22989835-22990283
chr9	CG	SV	22989835	22990283	37	+	.	ID=2861;Type=deletion;Left=chr9:22989503-22990033;Right=chr9:22989835-22990283
chr9	CG	SV	23352801	23368073	63	.	.	ID=2859;Type=deletion;Left=chr9:23352801-23353158+;Right=chr9:23367685-23368073+;Distance=14884;DiscordantMatePairAlignments=63;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr9	CG	SV	23352801	23353158	63	+	.	ID=2859;Type=deletion;Left=chr9:23352801-23353158;Right=chr9:23367685-23368073
chr9	CG	SV	23367685	23368073	63	+	.	ID=2859;Type=deletion;Left=chr9:23352801-23353158;Right=chr9:23367685-23368073
chr9	CG	SV	24135482	24140648	20	.	.	ID=2858;Type=deletion;Left=chr9:24135482-24135928+;Right=chr9:24140391-24140648+;Distance=4909;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=L1MC:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	24135482	24135928	20	+	.	ID=2858;Type=deletion;Left=chr9:24135482-24135928;Right=chr9:24140391-24140648
chr9	CG	SV	24140391	24140648	20	+	.	ID=2858;Type=deletion;Left=chr9:24135482-24135928;Right=chr9:24140391-24140648
chr9	CG	SV	24492071	24509499	87	.	.	ID=2857;Type=deletion;Left=chr9:24492071-24492423+;Right=chr9:24509103-24509499+;Distance=17032;DiscordantMatePairAlignments=87;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	24492071	24492423	87	+	.	ID=2857;Type=deletion;Left=chr9:24492071-24492423;Right=chr9:24509103-24509499
chr9	CG	SV	24509103	24509499	87	+	.	ID=2857;Type=deletion;Left=chr9:24492071-24492423;Right=chr9:24509103-24509499
chr9	CG	SV	24898222	24898664	11	.	.	ID=1133;Type=tandem-duplication;Left=chr9:24898222-24898453-;Right=chr9:24898426-24898664-;Distance=211;DiscordantMatePairAlignments=11;LeftRepeat=MER84:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr9	CG	SV	24898222	24898453	11	-	.	ID=1133;Type=tandem-duplication;Left=chr9:24898222-24898453;Right=chr9:24898426-24898664
chr9	CG	SV	24898426	24898664	11	-	.	ID=1133;Type=tandem-duplication;Left=chr9:24898222-24898453;Right=chr9:24898426-24898664
chr9	CG	SV	29082575	29088522	115	.	.	ID=2855;Type=deletion;Left=chr9:29082575-29082983+;Right=chr9:29088015-29088522+;Distance=5440;DiscordantMatePairAlignments=115;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr9	CG	SV	29082575	29082983	115	+	.	ID=2855;Type=deletion;Left=chr9:29082575-29082983;Right=chr9:29088015-29088522
chr9	CG	SV	29088015	29088522	115	+	.	ID=2855;Type=deletion;Left=chr9:29082575-29082983;Right=chr9:29088015-29088522
chr9	CG	SV	29614709	29615463	16	.	.	ID=2854;Type=deletion;Left=chr9:29614709-29615225+;Right=chr9:29615030-29615463+;Distance=321;DiscordantMatePairAlignments=16;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72531416 (chr9:29614691-29615012);Frequency=1.00
chr9	CG	SV	29614709	29615225	16	+	.	ID=2854;Type=deletion;Left=chr9:29614709-29615225;Right=chr9:29615030-29615463
chr9	CG	SV	29615030	29615463	16	+	.	ID=2854;Type=deletion;Left=chr9:29614709-29615225;Right=chr9:29615030-29615463
chr9	CG	SV	31281356	31283055	39	.	.	ID=2852;Type=deletion;Left=chr9:31281356-31281784+;Right=chr9:31282673-31283055+;Distance=1317;DiscordantMatePairAlignments=39;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1PA16:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71965107 (chr9:31281356-31282673);Frequency=0.71
chr9	CG	SV	31281356	31281784	39	+	.	ID=2852;Type=deletion;Left=chr9:31281356-31281784;Right=chr9:31282673-31283055
chr9	CG	SV	31282673	31283055	39	+	.	ID=2852;Type=deletion;Left=chr9:31281356-31281784;Right=chr9:31282673-31283055
chr9	CG	SV	33203156	33204193	21	.	.	ID=2851;Type=deletion;Left=chr9:33203156-33203566+;Right=chr9:33204015-33204193+;Distance=859;DiscordantMatePairAlignments=21;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66854519 (chr9:33203052-33203911);Frequency=0.94
chr9	CG	SV	33203156	33203566	21	+	.	ID=2851;Type=deletion;Left=chr9:33203156-33203566;Right=chr9:33204015-33204193
chr9	CG	SV	33204015	33204193	21	+	.	ID=2851;Type=deletion;Left=chr9:33203156-33203566;Right=chr9:33204015-33204193
chr9	CG	SV	33413376	33415127	15	.	.	ID=2850;Type=deletion;Left=chr9:33413376-33413915+;Right=chr9:33414669-33415127+;Distance=1293;DiscordantMatePairAlignments=15;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=NR_003667:-;RightGenes=NR_003667:-;XRef=;Frequency=0.47
chr9	CG	SV	33413376	33413915	15	+	.	ID=2850;Type=deletion;Left=chr9:33413376-33413915;Right=chr9:33414669-33415127
chr9	CG	SV	33414669	33415127	15	+	.	ID=2850;Type=deletion;Left=chr9:33413376-33413915;Right=chr9:33414669-33415127
chr9	CG	SV	34671022	34671976	22	.	.	ID=1132;Type=tandem-duplication;Left=chr9:34671022-34671480-;Right=chr9:34671817-34671976-;Distance=496;DiscordantMatePairAlignments=22;LeftRepeat=MLT1A:LTR:MaLR;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	34671022	34671480	22	-	.	ID=1132;Type=tandem-duplication;Left=chr9:34671022-34671480;Right=chr9:34671817-34671976
chr9	CG	SV	34671817	34671976	22	-	.	ID=1132;Type=tandem-duplication;Left=chr9:34671022-34671480;Right=chr9:34671817-34671976
chr9	CG	SV	36352905	36354314	73	.	.	ID=2848;Type=deletion;Left=chr9:36352905-36353431+;Right=chr9:36354103-36354314+;Distance=1198;DiscordantMatePairAlignments=73;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=NM_022781:-;NM_194328:-;NM_194329:-;NM_194330:-;NM_194332:-;RightGenes=NM_022781:-;NM_194328:-;NM_194329:-;NM_194330:-;NM_194332:-;XRef=;Frequency=0.88
chr9	CG	SV	36352905	36353431	73	+	.	ID=2848;Type=deletion;Left=chr9:36352905-36353431;Right=chr9:36354103-36354314
chr9	CG	SV	36354103	36354314	73	+	.	ID=2848;Type=deletion;Left=chr9:36352905-36353431;Right=chr9:36354103-36354314
chr9	CG	SV	36413664	36414361	19	.	.	ID=2847;Type=deletion;Left=chr9:36413664-36414123+;Right=chr9:36413980-36414361+;Distance=316;DiscordantMatePairAlignments=19;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66479112 (chr9:36413654-36413970);Frequency=0.88
chr9	CG	SV	36413664	36414123	19	+	.	ID=2847;Type=deletion;Left=chr9:36413664-36414123;Right=chr9:36413980-36414361
chr9	CG	SV	36413980	36414361	19	+	.	ID=2847;Type=deletion;Left=chr9:36413664-36414123;Right=chr9:36413980-36414361
chr9	CG	SV	42405904	44010786	76	.	.	ID=309;Type=complex;Left=chr9:42405904-42405991-;Right=chr9:44010660-44010786+;Distance=1604669;DiscordantMatePairAlignments=76;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=SegDup;Self chain;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	42405904	42405991	76	-	.	ID=309;Type=complex;Left=chr9:42405904-42405991;Right=chr9:44010660-44010786
chr9	CG	SV	44010660	44010786	76	-	.	ID=309;Type=complex;Left=chr9:42405904-42405991;Right=chr9:44010660-44010786
chr9	CG	SV	42405904	42406117	30	.	.	ID=1131;Type=complex;Left=chr9:42405904-42405991-;Right=chr9:42405991-42406117-;Distance=126;DiscordantMatePairAlignments=30;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr9	CG	SV	42405904	42405991	30	-	.	ID=1131;Type=complex;Left=chr9:42405904-42405991;Right=chr9:42405991-42406117
chr9	CG	SV	42405991	42406117	30	-	.	ID=1131;Type=complex;Left=chr9:42405904-42405991;Right=chr9:42405991-42406117
chr9	CG	SV	44010534	44010783	193	.	.	ID=1130;Type=complex;Left=chr9:44010534-44010660-;Right=chr9:44010677-44010783-;Distance=123;DiscordantMatePairAlignments=193;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=SegDup;Self chain;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	44010534	44010660	193	-	.	ID=1130;Type=complex;Left=chr9:44010534-44010660;Right=chr9:44010677-44010783
chr9	CG	SV	44010677	44010783	193	-	.	ID=1130;Type=complex;Left=chr9:44010534-44010660;Right=chr9:44010677-44010783
chr9	CG	SV	67912564	67914104	104	.	.	ID=2846;Type=deletion;Left=chr9:67912564-67913195+;Right=chr9:67913638-67914104+;Distance=1074;DiscordantMatePairAlignments=104;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	67912564	67913195	104	+	.	ID=2846;Type=deletion;Left=chr9:67912564-67913195;Right=chr9:67913638-67914104
chr9	CG	SV	67913638	67914104	104	+	.	ID=2846;Type=deletion;Left=chr9:67912564-67913195;Right=chr9:67913638-67914104
chr9	CG	SV	68286244	68287817	22	.	.	ID=2844;Type=deletion;Left=chr9:68286244-68286672+;Right=chr9:68287391-68287817+;Distance=1147;DiscordantMatePairAlignments=22;LeftRepeat=CER:Satellite:Satellite;SegDup;Self chain;Tandem period 144;Tandem period 48;Tandem period 96;RightRepeat=CER:Satellite:Satellite;SegDup;Self chain;Tandem period 144;Tandem period 48;Tandem period 96;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	68286244	68286672	22	+	.	ID=2844;Type=deletion;Left=chr9:68286244-68286672;Right=chr9:68287391-68287817
chr9	CG	SV	68287391	68287817	22	+	.	ID=2844;Type=deletion;Left=chr9:68286244-68286672;Right=chr9:68287391-68287817
chr9	CG	SV	70927942	70933602	17	.	.	ID=2842;Type=deletion;Left=chr9:70927942-70928413+;Right=chr9:70933176-70933602+;Distance=5234;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=L1MB8:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs67209752 (chr9:70927942-70933176);Frequency=0.88
chr9	CG	SV	70927942	70928413	17	+	.	ID=2842;Type=deletion;Left=chr9:70927942-70928413;Right=chr9:70933176-70933602
chr9	CG	SV	70933176	70933602	17	+	.	ID=2842;Type=deletion;Left=chr9:70927942-70928413;Right=chr9:70933176-70933602
chr9	CG	SV	70994347	70995254	128	.	.	ID=2840;Type=deletion;Left=chr9:70994347-70994820+;Right=chr9:70994821-70995254+;Distance=474;DiscordantMatePairAlignments=128;LeftRepeat=FAM:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_004817:+;NM_201629:+;RightGenes=NM_004817:+;NM_201629:+;XRef=rs71843308 (chr9:70994347-70994821);Frequency=0.65
chr9	CG	SV	70994347	70994820	128	+	.	ID=2840;Type=deletion;Left=chr9:70994347-70994820;Right=chr9:70994821-70995254
chr9	CG	SV	70994821	70995254	128	+	.	ID=2840;Type=deletion;Left=chr9:70994347-70994820;Right=chr9:70994821-70995254
chr9	CG	SV	74859350	74860090	13	.	.	ID=2837;Type=deletion;Left=chr9:74859350-74859719+;Right=chr9:74859629-74860090+;Distance=279;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67774611 (chr9:74859337-74859616);Frequency=1.00
chr9	CG	SV	74859350	74859719	13	+	.	ID=2837;Type=deletion;Left=chr9:74859350-74859719;Right=chr9:74859629-74860090
chr9	CG	SV	74859629	74860090	13	+	.	ID=2837;Type=deletion;Left=chr9:74859350-74859719;Right=chr9:74859629-74860090
chr9	CG	SV	76087758	76088366	29	.	.	ID=303;Type=probable-inversion;Left=chr9:76087758-76087958-;Right=chr9:76088209-76088366+;Distance=251;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr9	CG	SV	76087758	76087958	29	-	.	ID=303;Type=probable-inversion;Left=chr9:76087758-76087958;Right=chr9:76088209-76088366
chr9	CG	SV	76088209	76088366	29	-	.	ID=303;Type=probable-inversion;Left=chr9:76087758-76087958;Right=chr9:76088209-76088366
chr9	CG	SV	78745582	78748340	48	.	.	ID=2835;Type=deletion;Left=chr9:78745582-78746066+;Right=chr9:78747924-78748340+;Distance=2342;DiscordantMatePairAlignments=48;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67936913 (chr9:78745579-78747921);Frequency=0.12
chr9	CG	SV	78745582	78746066	48	+	.	ID=2835;Type=deletion;Left=chr9:78745582-78746066;Right=chr9:78747924-78748340
chr9	CG	SV	78747924	78748340	48	+	.	ID=2835;Type=deletion;Left=chr9:78745582-78746066;Right=chr9:78747924-78748340
chr9	CG	SV	80915598	80916371	20	.	.	ID=2834;Type=deletion;Left=chr9:80915598-80916057+;Right=chr9:80915919-80916371+;Distance=321;DiscordantMatePairAlignments=20;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66821513 (chr9:80915581-80915902);Frequency=0.88
chr9	CG	SV	80915598	80916057	20	+	.	ID=2834;Type=deletion;Left=chr9:80915598-80916057;Right=chr9:80915919-80916371
chr9	CG	SV	80915919	80916371	20	+	.	ID=2834;Type=deletion;Left=chr9:80915598-80916057;Right=chr9:80915919-80916371
chr9	CG	SV	83514183	83517084	158	.	.	ID=2831;Type=deletion;Left=chr9:83514183-83514733+;Right=chr9:83516761-83517084+;Distance=2578;DiscordantMatePairAlignments=158;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72292722 (chr9:83514183-83516761);Frequency=1.00
chr9	CG	SV	83514183	83514733	158	+	.	ID=2831;Type=deletion;Left=chr9:83514183-83514733;Right=chr9:83516761-83517084
chr9	CG	SV	83516761	83517084	158	+	.	ID=2831;Type=deletion;Left=chr9:83514183-83514733;Right=chr9:83516761-83517084
chr9	CG	SV	86965106	86966186	19	.	.	ID=2830;Type=deletion;Left=chr9:86965106-86965513+;Right=chr9:86966077-86966186+;Distance=971;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72108290 (chr9:86964897-86965868);Frequency=0.35
chr9	CG	SV	86965106	86965513	19	+	.	ID=2830;Type=deletion;Left=chr9:86965106-86965513;Right=chr9:86966077-86966186
chr9	CG	SV	86966077	86966186	19	+	.	ID=2830;Type=deletion;Left=chr9:86965106-86965513;Right=chr9:86966077-86966186
chr9	CG	SV	87091236	87092021	28	.	.	ID=2829;Type=deletion;Left=chr9:87091236-87091669+;Right=chr9:87091543-87092021+;Distance=307;DiscordantMatePairAlignments=28;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71317216 (chr9:87091236-87091543);Frequency=0.88
chr9	CG	SV	87091236	87091669	28	+	.	ID=2829;Type=deletion;Left=chr9:87091236-87091669;Right=chr9:87091543-87092021
chr9	CG	SV	87091543	87092021	28	+	.	ID=2829;Type=deletion;Left=chr9:87091236-87091669;Right=chr9:87091543-87092021
chr9	CG	SV	88988922	88989594	10	.	.	ID=2828;Type=deletion;Left=chr9:88988922-88989447+;Right=chr9:88989236-88989594+;Distance=314;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=HAL1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71317220 (chr9:88988922-88989236);Frequency=1.00
chr9	CG	SV	88988922	88989447	10	+	.	ID=2828;Type=deletion;Left=chr9:88988922-88989447;Right=chr9:88989236-88989594
chr9	CG	SV	88989236	88989594	10	+	.	ID=2828;Type=deletion;Left=chr9:88988922-88989447;Right=chr9:88989236-88989594
chr9	CG	SV	90048813	90051364	97	.	.	ID=2827;Type=deletion;Left=chr9:90048813-90049156+;Right=chr9:90050793-90051364+;Distance=1980;DiscordantMatePairAlignments=97;LeftRepeat=MER21C:LTR:ERV1;RightRepeat=MER21C:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs71317224 (chr9:90048816-90050796);Frequency=1.00
chr9	CG	SV	90048813	90049156	97	+	.	ID=2827;Type=deletion;Left=chr9:90048813-90049156;Right=chr9:90050793-90051364
chr9	CG	SV	90050793	90051364	97	+	.	ID=2827;Type=deletion;Left=chr9:90048813-90049156;Right=chr9:90050793-90051364
chr9	CG	SV	90482061	90482811	49	.	.	ID=2826;Type=deletion;Left=chr9:90482061-90482427+;Right=chr9:90482543-90482811+;Distance=482;DiscordantMatePairAlignments=49;LeftRepeat=(ATGGTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 18;RightRepeat=Self chain;Tandem period 18;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr9	CG	SV	90482061	90482427	49	+	.	ID=2826;Type=deletion;Left=chr9:90482061-90482427;Right=chr9:90482543-90482811
chr9	CG	SV	90482543	90482811	49	+	.	ID=2826;Type=deletion;Left=chr9:90482061-90482427;Right=chr9:90482543-90482811
chr9	CG	SV	95510176	95511725	188	.	.	ID=2815;Type=deletion;Left=chr9:95510176-95510681+;Right=chr9:95511286-95511725+;Distance=1110;DiscordantMatePairAlignments=188;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67273187 (chr9:95510176-95511286);Frequency=0.29
chr9	CG	SV	95510176	95510681	188	+	.	ID=2815;Type=deletion;Left=chr9:95510176-95510681;Right=chr9:95511286-95511725
chr9	CG	SV	95511286	95511725	188	+	.	ID=2815;Type=deletion;Left=chr9:95510176-95510681;Right=chr9:95511286-95511725
chr9	CG	SV	98102408	98103093	31	.	.	ID=2813;Type=deletion;Left=chr9:98102408-98102844+;Right=chr9:98102746-98103093+;Distance=338;DiscordantMatePairAlignments=31;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000197:-;RightGenes=NM_000197:-;XRef=;Frequency=0.41
chr9	CG	SV	98102408	98102844	31	+	.	ID=2813;Type=deletion;Left=chr9:98102408-98102844;Right=chr9:98102746-98103093
chr9	CG	SV	98102746	98103093	31	+	.	ID=2813;Type=deletion;Left=chr9:98102408-98102844;Right=chr9:98102746-98103093
chr9	CG	SV	99800896	99801675	18	.	.	ID=2812;Type=deletion;Left=chr9:99800896-99801261+;Right=chr9:99801226-99801675+;Distance=330;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_006401:+;RightGenes=NM_006401:+;XRef=rs67907015 (chr9:99800896-99801226);Frequency=0.88
chr9	CG	SV	99800896	99801261	18	+	.	ID=2812;Type=deletion;Left=chr9:99800896-99801261;Right=chr9:99801226-99801675
chr9	CG	SV	99801226	99801675	18	+	.	ID=2812;Type=deletion;Left=chr9:99800896-99801261;Right=chr9:99801226-99801675
chr9	CG	SV	100348869	100351942	173	.	.	ID=2810;Type=deletion;Left=chr9:100348869-100349307+;Right=chr9:100351490-100351942+;Distance=2621;DiscordantMatePairAlignments=173;LeftRepeat=;RightRepeat=;LeftGenes=NM_005458:-;RightGenes=NM_005458:-;XRef=rs71885665 (chr9:100348864-100351485);Frequency=0.82
chr9	CG	SV	100348869	100349307	173	+	.	ID=2810;Type=deletion;Left=chr9:100348869-100349307;Right=chr9:100351490-100351942
chr9	CG	SV	100351490	100351942	173	+	.	ID=2810;Type=deletion;Left=chr9:100348869-100349307;Right=chr9:100351490-100351942
chr9	CG	SV	103221642	103222241	24	.	.	ID=1116;Type=tandem-duplication;Left=chr9:103221642-103221936-;Right=chr9:103221957-103222241-;Distance=305;DiscordantMatePairAlignments=24;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.30
chr9	CG	SV	103221642	103221936	24	-	.	ID=1116;Type=tandem-duplication;Left=chr9:103221642-103221936;Right=chr9:103221957-103222241
chr9	CG	SV	103221957	103222241	24	-	.	ID=1116;Type=tandem-duplication;Left=chr9:103221642-103221936;Right=chr9:103221957-103222241
chr9	CG	SV	103259520	103260660	147	.	.	ID=2807;Type=deletion;Left=chr9:103259520-103259923+;Right=chr9:103260203-103260660+;Distance=683;DiscordantMatePairAlignments=147;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr9	CG	SV	103259520	103259923	147	+	.	ID=2807;Type=deletion;Left=chr9:103259520-103259923;Right=chr9:103260203-103260660
chr9	CG	SV	103260203	103260660	147	+	.	ID=2807;Type=deletion;Left=chr9:103259520-103259923;Right=chr9:103260203-103260660
chr9	CG	SV	103483786	103484818	180	.	.	ID=2806;Type=deletion;Left=chr9:103483786-103484202+;Right=chr9:103484552-103484818+;Distance=766;DiscordantMatePairAlignments=180;LeftRepeat=;RightRepeat=;LeftGenes=NM_133445:-;RightGenes=NM_133445:-;XRef=rs66469119 (chr9:103483782-103484548);Frequency=1.00
chr9	CG	SV	103483786	103484202	180	+	.	ID=2806;Type=deletion;Left=chr9:103483786-103484202;Right=chr9:103484552-103484818
chr9	CG	SV	103484552	103484818	180	+	.	ID=2806;Type=deletion;Left=chr9:103483786-103484202;Right=chr9:103484552-103484818
chr9	CG	SV	111470024	111470857	17	.	.	ID=2801;Type=deletion;Left=chr9:111470024-111470151+;Right=chr9:111470339-111470857+;Distance=315;DiscordantMatePairAlignments=17;LeftRepeat=L4:LINE:RTE;RightRepeat=L4:LINE:RTE;LeftGenes=NM_001037293:+;NM_053016:+;RightGenes=NM_001037293:+;NM_053016:+;XRef=rs68118332 (chr9:111470033-111470348);Frequency=0.65
chr9	CG	SV	111470024	111470151	17	+	.	ID=2801;Type=deletion;Left=chr9:111470024-111470151;Right=chr9:111470339-111470857
chr9	CG	SV	111470339	111470857	17	+	.	ID=2801;Type=deletion;Left=chr9:111470024-111470151;Right=chr9:111470339-111470857
chr9	CG	SV	114976918	114977644	14	.	.	ID=2799;Type=deletion;Left=chr9:114976918-114977384+;Right=chr9:114977213-114977644+;Distance=295;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=;LeftGenes=NM_015258:-;RightGenes=NM_015258:-;XRef=rs67956937 (chr9:114976918-114977213);Frequency=1.00
chr9	CG	SV	114976918	114977384	14	+	.	ID=2799;Type=deletion;Left=chr9:114976918-114977384;Right=chr9:114977213-114977644
chr9	CG	SV	114977213	114977644	14	+	.	ID=2799;Type=deletion;Left=chr9:114976918-114977384;Right=chr9:114977213-114977644
chr9	CG	SV	118516898	118517697	52	.	.	ID=2798;Type=deletion;Left=chr9:118516898-118517382+;Right=chr9:118517232-118517697+;Distance=334;DiscordantMatePairAlignments=52;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_014010:-;NM_198186:-;NM_198187:-;RightGenes=NM_014010:-;NM_198186:-;NM_198187:-;XRef=rs72440176 (chr9:118516898-118517232);Frequency=0.94
chr9	CG	SV	118516898	118517382	52	+	.	ID=2798;Type=deletion;Left=chr9:118516898-118517382;Right=chr9:118517232-118517697
chr9	CG	SV	118517232	118517697	52	+	.	ID=2798;Type=deletion;Left=chr9:118516898-118517382;Right=chr9:118517232-118517697
chr9	CG	SV	121571666	121572425	33	.	.	ID=2797;Type=deletion;Left=chr9:121571666-121572198+;Right=chr9:121571984-121572425+;Distance=318;DiscordantMatePairAlignments=33;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10529675 (chr9:121571655-121571973);Frequency=1.00
chr9	CG	SV	121571666	121572198	33	+	.	ID=2797;Type=deletion;Left=chr9:121571666-121572198;Right=chr9:121571984-121572425
chr9	CG	SV	121571984	121572425	33	+	.	ID=2797;Type=deletion;Left=chr9:121571666-121572198;Right=chr9:121571984-121572425
chr9	CG	SV	123266200	123267639	173	.	.	ID=1114;Type=tandem-duplication;Left=chr9:123266200-123266724-;Right=chr9:123267139-123267639-;Distance=915;DiscordantMatePairAlignments=173;LeftRepeat=(CAAAAA)n:Simple_repeat:Simple_repeat;Tandem AAAACA;Tandem CAAAA;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=NR_003191:-;RightGenes=NR_003191:-;XRef=;Frequency=0.24
chr9	CG	SV	123266200	123266724	173	-	.	ID=1114;Type=tandem-duplication;Left=chr9:123266200-123266724;Right=chr9:123267139-123267639
chr9	CG	SV	123267139	123267639	173	-	.	ID=1114;Type=tandem-duplication;Left=chr9:123266200-123266724;Right=chr9:123267139-123267639
chr9	CG	SV	129941390	129942287	14	.	.	ID=2796;Type=deletion;Left=chr9:129941390-129941743+;Right=chr9:129941950-129942287+;Distance=560;DiscordantMatePairAlignments=14;LeftRepeat=SegDup;Self chain;Tandem period 159;Tandem period 80;RightRepeat=SATR1:Satellite:Satellite;SegDup;Self chain;Tandem period 159;Tandem period 80;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr9	CG	SV	129941390	129941743	14	+	.	ID=2796;Type=deletion;Left=chr9:129941390-129941743;Right=chr9:129941950-129942287
chr9	CG	SV	129941950	129942287	14	+	.	ID=2796;Type=deletion;Left=chr9:129941390-129941743;Right=chr9:129941950-129942287
chr9	CG	SV	130402343	130405750	62	.	.	ID=2795;Type=deletion;Left=chr9:130402343-130402733+;Right=chr9:130405306-130405750+;Distance=2963;DiscordantMatePairAlignments=62;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001130438:+;NM_003127:+;RightGenes=NM_001130438:+;NM_003127:+;XRef=;Frequency=0.00
chr9	CG	SV	130402343	130402733	62	+	.	ID=2795;Type=deletion;Left=chr9:130402343-130402733;Right=chr9:130405306-130405750
chr9	CG	SV	130405306	130405750	62	+	.	ID=2795;Type=deletion;Left=chr9:130402343-130402733;Right=chr9:130405306-130405750
chr9	CG	SV	132070467	132075035	51	.	.	ID=2791;Type=deletion;Left=chr9:132070467-132070935+;Right=chr9:132074547-132075035+;Distance=4080;DiscordantMatePairAlignments=51;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr9	CG	SV	132070467	132070935	51	+	.	ID=2791;Type=deletion;Left=chr9:132070467-132070935;Right=chr9:132074547-132075035
chr9	CG	SV	132074547	132075035	51	+	.	ID=2791;Type=deletion;Left=chr9:132070467-132070935;Right=chr9:132074547-132075035
chr9	CG	SV	132372948	132377559	33	.	.	ID=2790;Type=deletion;Left=chr9:132372948-132373306+;Right=chr9:132377243-132377559+;Distance=4295;DiscordantMatePairAlignments=33;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L1PB2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr9	CG	SV	132372948	132373306	33	+	.	ID=2790;Type=deletion;Left=chr9:132372948-132373306;Right=chr9:132377243-132377559
chr9	CG	SV	132377243	132377559	33	+	.	ID=2790;Type=deletion;Left=chr9:132372948-132373306;Right=chr9:132377243-132377559
chr9	CG	SV	134748910	134750053	66	.	.	ID=2787;Type=distal-duplication;Left=chr9:134748910-134749347+;Right=chr9:134749954-134750053+;Distance=1044;DiscordantMatePairAlignments=66;LeftRepeat=;RightRepeat=;LeftGenes=NM_018956:+;RightGenes=NM_018956:+;XRef=;Frequency=0.35
chr9	CG	SV	134748910	134749347	66	+	.	ID=2787;Type=distal-duplication;Left=chr9:134748910-134749347;Right=chr9:134749954-134750053
chr9	CG	SV	134749954	134750053	66	+	.	ID=2787;Type=distal-duplication;Left=chr9:134748910-134749347;Right=chr9:134749954-134750053
chr9	CG	SV	134748468	134750089	59	.	.	ID=1112;Type=distal-duplication;Left=chr9:134748468-134748911-;Right=chr9:134749948-134750089-;Distance=1178;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_018956:+;RightGenes=NM_018956:+;XRef=;Frequency=0.35
chr9	CG	SV	134748468	134748911	59	-	.	ID=1112;Type=distal-duplication;Left=chr9:134748468-134748911;Right=chr9:134749948-134750089
chr9	CG	SV	134749948	134750089	59	-	.	ID=1112;Type=distal-duplication;Left=chr9:134748468-134748911;Right=chr9:134749948-134750089
chr9	CG	SV	135369043	135369752	35	.	.	ID=2784;Type=complex;Left=chr9:135369043-135369516+;Right=chr9:135369385-135369752+;Distance=342;DiscordantMatePairAlignments=35;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35795497 (chr9:135369031-135369373);Frequency=1.00
chr9	CG	SV	135369043	135369516	35	+	.	ID=2784;Type=complex;Left=chr9:135369043-135369516;Right=chr9:135369385-135369752
chr9	CG	SV	135369385	135369752	35	+	.	ID=2784;Type=complex;Left=chr9:135369043-135369516;Right=chr9:135369385-135369752
chr9	CG	SV	135369043	135369904	25	.	.	ID=2785;Type=complex;Left=chr9:135369043-135369421+;Right=chr9:135369385-135369904+;Distance=342;DiscordantMatePairAlignments=25;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs36107150 (chr9:135369043-135369385);Frequency=1.00
chr9	CG	SV	135369043	135369421	25	+	.	ID=2785;Type=complex;Left=chr9:135369043-135369421;Right=chr9:135369385-135369904
chr9	CG	SV	135369385	135369904	25	+	.	ID=2785;Type=complex;Left=chr9:135369043-135369421;Right=chr9:135369385-135369904
chr9	CG	SV	135403929	135404639	32	.	.	ID=2782;Type=complex;Left=chr9:135403929-135404461+;Right=chr9:135404253-135404639+;Distance=324;DiscordantMatePairAlignments=32;LeftRepeat=;RightRepeat=ERVL-E:LTR:ERVL;LeftGenes=NM_001145320:+;NM_014694:+;RightGenes=NM_001145320:+;NM_014694:+;XRef=rs67544107 (chr9:135403937-135404261);Frequency=1.00
chr9	CG	SV	135403929	135404461	32	+	.	ID=2782;Type=complex;Left=chr9:135403929-135404461;Right=chr9:135404253-135404639
chr9	CG	SV	135404253	135404639	32	+	.	ID=2782;Type=complex;Left=chr9:135403929-135404461;Right=chr9:135404253-135404639
chr9	CG	SV	135403937	135404777	31	.	.	ID=2783;Type=complex;Left=chr9:135403937-135404280+;Right=chr9:135404261-135404777+;Distance=324;DiscordantMatePairAlignments=31;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=ERVL-E:LTR:ERVL;LeftGenes=NM_001145320:+;NM_014694:+;RightGenes=NM_001145320:+;NM_014694:+;XRef=rs67544107 (chr9:135403937-135404261);Frequency=1.00
chr9	CG	SV	135403937	135404280	31	+	.	ID=2783;Type=complex;Left=chr9:135403937-135404280;Right=chr9:135404261-135404777
chr9	CG	SV	135404261	135404777	31	+	.	ID=2783;Type=complex;Left=chr9:135403937-135404280;Right=chr9:135404261-135404777
chr9	CG	SV	135443378	135443656	16	.	.	ID=1111;Type=tandem-duplication;Left=chr9:135443378-135443489-;Right=chr9:135443513-135443656-;Distance=167;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=Tandem period 17;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	135443378	135443489	16	-	.	ID=1111;Type=tandem-duplication;Left=chr9:135443378-135443489;Right=chr9:135443513-135443656
chr9	CG	SV	135443513	135443656	16	-	.	ID=1111;Type=tandem-duplication;Left=chr9:135443378-135443489;Right=chr9:135443513-135443656
chr9	CG	SV	135615015	135616558	111	.	.	ID=2781;Type=deletion;Left=chr9:135615015-135615378+;Right=chr9:135616088-135616558+;Distance=1073;DiscordantMatePairAlignments=111;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr9	CG	SV	135615015	135615378	111	+	.	ID=2781;Type=deletion;Left=chr9:135615015-135615378;Right=chr9:135616088-135616558
chr9	CG	SV	135616088	135616558	111	+	.	ID=2781;Type=deletion;Left=chr9:135615015-135615378;Right=chr9:135616088-135616558
chr9	CG	SV	137353887	137357973	417	.	.	ID=2779;Type=deletion;Left=chr9:137353887-137354424+;Right=chr9:137357427-137357973+;Distance=3540;DiscordantMatePairAlignments=417;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67671245 (chr9:137353887-137357427);Frequency=0.82
chr9	CG	SV	137353887	137354424	417	+	.	ID=2779;Type=deletion;Left=chr9:137353887-137354424;Right=chr9:137357427-137357973
chr9	CG	SV	137357427	137357973	417	+	.	ID=2779;Type=deletion;Left=chr9:137353887-137354424;Right=chr9:137357427-137357973
chr9	CG	SV	138547345	138548139	15	.	.	ID=2778;Type=deletion;Left=chr9:138547345-138547838+;Right=chr9:138547616-138548139+;Distance=271;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_017617:-;RightGenes=NM_017617:-;XRef=rs10525313 (chr9:138547345-138547608);Frequency=0.47
chr9	CG	SV	138547345	138547838	15	+	.	ID=2778;Type=deletion;Left=chr9:138547345-138547838;Right=chr9:138547616-138548139
chr9	CG	SV	138547616	138548139	15	+	.	ID=2778;Type=deletion;Left=chr9:138547345-138547838;Right=chr9:138547616-138548139
chr9	CG	SV	139287848	139288108	10	.	.	ID=1109;Type=tandem-duplication;Left=chr9:139287848-139287972-;Right=chr9:139288003-139288108-;Distance=136;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 22;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr9	CG	SV	139287848	139287972	10	-	.	ID=1109;Type=tandem-duplication;Left=chr9:139287848-139287972;Right=chr9:139288003-139288108
chr9	CG	SV	139288003	139288108	10	-	.	ID=1109;Type=tandem-duplication;Left=chr9:139287848-139287972;Right=chr9:139288003-139288108
chr9	CG	SV	139683428	139683851	17	.	.	ID=1108;Type=tandem-duplication;Left=chr9:139683428-139683588-;Right=chr9:139683653-139683851-;Distance=263;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem period 37;RightRepeat=L2:LINE:L2;Self chain;Tandem period 37;LeftGenes=NM_001145527:+;NM_024757:+;RightGenes=NM_001145527:+;NM_024757:+;XRef=;Frequency=0.88
chr9	CG	SV	139683428	139683588	17	-	.	ID=1108;Type=tandem-duplication;Left=chr9:139683428-139683588;Right=chr9:139683653-139683851
chr9	CG	SV	139683653	139683851	17	-	.	ID=1108;Type=tandem-duplication;Left=chr9:139683428-139683588;Right=chr9:139683653-139683851
chr9	CG	SV	139892490	139897363	54	.	.	ID=2776;Type=complex;Left=chr9:139892490-139892701+;Right=chr9:139897015-139897363+;Distance=4525;DiscordantMatePairAlignments=54;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000718:+;RightGenes=NM_000718:+;XRef=;Frequency=1.00
chr9	CG	SV	139892490	139892701	54	+	.	ID=2776;Type=complex;Left=chr9:139892490-139892701;Right=chr9:139897015-139897363
chr9	CG	SV	139897015	139897363	54	+	.	ID=2776;Type=complex;Left=chr9:139892490-139892701;Right=chr9:139897015-139897363
chr9	CG	SV	139893433	139897533	38	.	.	ID=2775;Type=complex;Left=chr9:139893433-139893545+;Right=chr9:139897017-139897533+;Distance=3584;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000718:+;RightGenes=NM_000718:+;XRef=rs72411053 (chr9:139893431-139897015);Frequency=1.00
chr9	CG	SV	139893433	139893545	38	+	.	ID=2775;Type=complex;Left=chr9:139893433-139893545;Right=chr9:139897017-139897533
chr9	CG	SV	139897017	139897533	38	+	.	ID=2775;Type=complex;Left=chr9:139893433-139893545;Right=chr9:139897017-139897533
chr10	CG	SV	4280063	4281947	165	.	.	ID=2770;Type=deletion;Left=chr10:4280063-4280542+;Right=chr10:4281683-4281947+;Distance=1620;DiscordantMatePairAlignments=165;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66666838 (chr10:4280063-4281683);Frequency=1.00
chr10	CG	SV	4280063	4280542	165	+	.	ID=2770;Type=deletion;Left=chr10:4280063-4280542;Right=chr10:4281683-4281947
chr10	CG	SV	4281683	4281947	165	+	.	ID=2770;Type=deletion;Left=chr10:4280063-4280542;Right=chr10:4281683-4281947
chr10	CG	SV	4402191	4409262	46	.	.	ID=2769;Type=deletion;Left=chr10:4402191-4402501+;Right=chr10:4408853-4409262+;Distance=6662;DiscordantMatePairAlignments=46;LeftRepeat=Self chain;RightRepeat=L1MD2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	4402191	4402501	46	+	.	ID=2769;Type=deletion;Left=chr10:4402191-4402501;Right=chr10:4408853-4409262
chr10	CG	SV	4408853	4409262	46	+	.	ID=2769;Type=deletion;Left=chr10:4402191-4402501;Right=chr10:4408853-4409262
chr10	CG	SV	4698518	4700964	132	.	.	ID=2767;Type=deletion;Left=chr10:4698518-4698967+;Right=chr10:4700522-4700964+;Distance=2004;DiscordantMatePairAlignments=132;LeftRepeat=L1MB7:LINE:L1;RightRepeat=L1MB7:LINE:L1;LeftGenes=NR_024475:-;RightGenes=NR_024475:-;XRef=;Frequency=0.88
chr10	CG	SV	4698518	4698967	132	+	.	ID=2767;Type=deletion;Left=chr10:4698518-4698967;Right=chr10:4700522-4700964
chr10	CG	SV	4700522	4700964	132	+	.	ID=2767;Type=deletion;Left=chr10:4698518-4698967;Right=chr10:4700522-4700964
chr10	CG	SV	5192130	5314881	16	.	.	ID=2766;Type=distal-duplication;Left=chr10:5192130-5192491+;Right=chr10:5314787-5314881+;Distance=122657;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_027916:-;RightGenes=;XRef=;Frequency=0.94
chr10	CG	SV	5192130	5192491	16	+	.	ID=2766;Type=distal-duplication;Left=chr10:5192130-5192491;Right=chr10:5314787-5314881
chr10	CG	SV	5314787	5314881	16	+	.	ID=2766;Type=distal-duplication;Left=chr10:5192130-5192491;Right=chr10:5314787-5314881
chr10	CG	SV	5191818	5315036	20	.	.	ID=1105;Type=distal-duplication;Left=chr10:5191818-5192144-;Right=chr10:5314778-5315036-;Distance=122892;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_027916:-;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	5191818	5192144	20	-	.	ID=1105;Type=distal-duplication;Left=chr10:5191818-5192144;Right=chr10:5314778-5315036
chr10	CG	SV	5314778	5315036	20	-	.	ID=1105;Type=distal-duplication;Left=chr10:5191818-5192144;Right=chr10:5314778-5315036
chr10	CG	SV	5627100	5677556	293	.	.	ID=2765;Type=deletion;Left=chr10:5627100-5627568+;Right=chr10:5677116-5677556+;Distance=50016;DiscordantMatePairAlignments=293;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	5627100	5627568	293	+	.	ID=2765;Type=deletion;Left=chr10:5627100-5627568;Right=chr10:5677116-5677556
chr10	CG	SV	5677116	5677556	293	+	.	ID=2765;Type=deletion;Left=chr10:5627100-5627568;Right=chr10:5677116-5677556
chr10	CG	SV	6137383	6138406	222	.	.	ID=2764;Type=deletion;Left=chr10:6137383-6137841+;Right=chr10:6137881-6138406+;Distance=498;DiscordantMatePairAlignments=222;LeftRepeat=MER5B:DNA:MER1_type;RightRepeat=;LeftGenes=NM_000417:-;RightGenes=NM_000417:-;XRef=rs71389922 (chr10:6137392-6137890);Frequency=1.00
chr10	CG	SV	6137383	6137841	222	+	.	ID=2764;Type=deletion;Left=chr10:6137383-6137841;Right=chr10:6137881-6138406
chr10	CG	SV	6137881	6138406	222	+	.	ID=2764;Type=deletion;Left=chr10:6137383-6137841;Right=chr10:6137881-6138406
chr10	CG	SV	6451576	6458161	226	.	.	ID=2762;Type=deletion;Left=chr10:6451576-6452012+;Right=chr10:6457642-6458161+;Distance=6066;DiscordantMatePairAlignments=226;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71389924 (chr10:6451586-6457652);Frequency=0.94
chr10	CG	SV	6451576	6452012	226	+	.	ID=2762;Type=deletion;Left=chr10:6451576-6452012;Right=chr10:6457642-6458161
chr10	CG	SV	6457642	6458161	226	+	.	ID=2762;Type=deletion;Left=chr10:6451576-6452012;Right=chr10:6457642-6458161
chr10	CG	SV	6687901	6689099	55	.	.	ID=2761;Type=deletion;Left=chr10:6687901-6688412+;Right=chr10:6688860-6689099+;Distance=959;DiscordantMatePairAlignments=55;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	6687901	6688412	55	+	.	ID=2761;Type=deletion;Left=chr10:6687901-6688412;Right=chr10:6688860-6689099
chr10	CG	SV	6688860	6689099	55	+	.	ID=2761;Type=deletion;Left=chr10:6687901-6688412;Right=chr10:6688860-6689099
chr10	CG	SV	7117046	7118761	208	.	.	ID=2760;Type=deletion;Left=chr10:7117046-7117513+;Right=chr10:7118307-7118761+;Distance=1261;DiscordantMatePairAlignments=208;LeftRepeat=;RightRepeat=L1ME3A:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr10	CG	SV	7117046	7117513	208	+	.	ID=2760;Type=deletion;Left=chr10:7117046-7117513;Right=chr10:7118307-7118761
chr10	CG	SV	7118307	7118761	208	+	.	ID=2760;Type=deletion;Left=chr10:7117046-7117513;Right=chr10:7118307-7118761
chr10	CG	SV	9559834	9560590	11	.	.	ID=2759;Type=deletion;Left=chr10:9559834-9560099+;Right=chr10:9560140-9560590+;Distance=306;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs71953578 (chr10:9559821-9560127);Frequency=1.00
chr10	CG	SV	9559834	9560099	11	+	.	ID=2759;Type=deletion;Left=chr10:9559834-9560099;Right=chr10:9560140-9560590
chr10	CG	SV	9560140	9560590	11	+	.	ID=2759;Type=deletion;Left=chr10:9559834-9560099;Right=chr10:9560140-9560590
chr10	CG	SV	10533425	10533916	11	.	.	ID=2758;Type=deletion;Left=chr10:10533425-10533840+;Right=chr10:10533748-10533916+;Distance=323;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=L1ME2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	10533425	10533840	11	+	.	ID=2758;Type=deletion;Left=chr10:10533425-10533840;Right=chr10:10533748-10533916
chr10	CG	SV	10533748	10533916	11	+	.	ID=2758;Type=deletion;Left=chr10:10533425-10533840;Right=chr10:10533748-10533916
chr10	CG	SV	12907007	12907534	12	.	.	ID=295;Type=distal-duplication;Left=chr10:12907007-12907129-;Right=chr10:12907196-12907534+;Distance=67;DiscordantMatePairAlignments=12;LeftRepeat=MADE1:DNA:Mariner;Self chain;RightRepeat=Self chain;LeftGenes=NM_020397:+;NM_153498:+;RightGenes=NM_020397:+;NM_153498:+;XRef=;Frequency=1.00
chr10	CG	SV	12907007	12907129	12	-	.	ID=295;Type=distal-duplication;Left=chr10:12907007-12907129;Right=chr10:12907196-12907534
chr10	CG	SV	12907196	12907534	12	-	.	ID=295;Type=distal-duplication;Left=chr10:12907007-12907129;Right=chr10:12907196-12907534
chr10	CG	SV	12907177	12907250	19	.	.	ID=4482;Type=distal-duplication;Left=chr10:12907177-12907692+;Right=chr10:12907175-12907250-;Distance=73;DiscordantMatePairAlignments=19;LeftRepeat=MADE1:DNA:Mariner;Self chain;RightRepeat=Self chain;LeftGenes=NM_020397:+;NM_153498:+;RightGenes=NM_020397:+;NM_153498:+;XRef=;Frequency=1.00
chr10	CG	SV	12907177	12907692	19	+	.	ID=4482;Type=distal-duplication;Left=chr10:12907177-12907692;Right=chr10:12907175-12907250
chr10	CG	SV	12907175	12907250	19	+	.	ID=4482;Type=distal-duplication;Left=chr10:12907177-12907692;Right=chr10:12907175-12907250
chr10	CG	SV	13144666	13145733	63	.	.	ID=294;Type=probable-inversion;Left=chr10:13144666-13144973-;Right=chr10:13145283-13145733+;Distance=310;DiscordantMatePairAlignments=63;LeftRepeat=LTR8:LTR:ERV1;Tandem period 45;RightRepeat=LTR8:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr10	CG	SV	13144666	13144973	63	-	.	ID=294;Type=probable-inversion;Left=chr10:13144666-13144973;Right=chr10:13145283-13145733
chr10	CG	SV	13145283	13145733	63	-	.	ID=294;Type=probable-inversion;Left=chr10:13144666-13144973;Right=chr10:13145283-13145733
chr10	CG	SV	18543082	18544093	228	.	.	ID=2757;Type=deletion;Left=chr10:18543082-18543543+;Right=chr10:18543596-18544093+;Distance=514;DiscordantMatePairAlignments=228;LeftRepeat=;RightRepeat=;LeftGenes=NM_001167945:+;NM_201571:+;NM_201572:+;NM_201593:+;NM_201596:+;NM_201597:+;RightGenes=NM_001167945:+;NM_201571:+;NM_201572:+;NM_201593:+;NM_201596:+;NM_201597:+;XRef=rs66880279 (chr10:18543081-18543595);Frequency=0.88
chr10	CG	SV	18543082	18543543	228	+	.	ID=2757;Type=deletion;Left=chr10:18543082-18543543;Right=chr10:18543596-18544093
chr10	CG	SV	18543596	18544093	228	+	.	ID=2757;Type=deletion;Left=chr10:18543082-18543543;Right=chr10:18543596-18544093
chr10	CG	SV	25138095	25138826	38	.	.	ID=2755;Type=deletion;Left=chr10:25138095-25138589+;Right=chr10:25138433-25138826+;Distance=338;DiscordantMatePairAlignments=38;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10705016 (chr10:25138095-25138433);Frequency=1.00
chr10	CG	SV	25138095	25138589	38	+	.	ID=2755;Type=deletion;Left=chr10:25138095-25138589;Right=chr10:25138433-25138826
chr10	CG	SV	25138433	25138826	38	+	.	ID=2755;Type=deletion;Left=chr10:25138095-25138589;Right=chr10:25138433-25138826
chr10	CG	SV	27039059	27042378	39	.	.	ID=2752;Type=deletion;Left=chr10:27039059-27039529+;Right=chr10:27042197-27042378+;Distance=3138;DiscordantMatePairAlignments=39;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_014317:+;RightGenes=NM_014317:+;XRef=rs67040591 (chr10:27038982-27042120);Frequency=0.88
chr10	CG	SV	27039059	27039529	39	+	.	ID=2752;Type=deletion;Left=chr10:27039059-27039529;Right=chr10:27042197-27042378
chr10	CG	SV	27042197	27042378	39	+	.	ID=2752;Type=deletion;Left=chr10:27039059-27039529;Right=chr10:27042197-27042378
chr10	CG	SV	27264209	27268481	17	.	.	ID=2751;Type=distal-duplication;Left=chr10:27264209-27264645+;Right=chr10:27268094-27268481+;Distance=3885;DiscordantMatePairAlignments=17;LeftRepeat=AluSc:SINE:Alu;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NR_026795:-;RightGenes=NR_026795:-;XRef=rs72174406 (chr10:27264209-27268094);Frequency=0.76
chr10	CG	SV	27264209	27264645	17	+	.	ID=2751;Type=distal-duplication;Left=chr10:27264209-27264645;Right=chr10:27268094-27268481
chr10	CG	SV	27268094	27268481	17	+	.	ID=2751;Type=distal-duplication;Left=chr10:27264209-27264645;Right=chr10:27268094-27268481
chr10	CG	SV	27264333	27269313	34	.	.	ID=1104;Type=distal-duplication;Left=chr10:27264333-27264633-;Right=chr10:27268868-27269313-;Distance=4680;DiscordantMatePairAlignments=34;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NR_026795:-;RightGenes=NR_026795:-;XRef=;Frequency=0.76
chr10	CG	SV	27264333	27264633	34	-	.	ID=1104;Type=distal-duplication;Left=chr10:27264333-27264633;Right=chr10:27268868-27269313
chr10	CG	SV	27268868	27269313	34	-	.	ID=1104;Type=distal-duplication;Left=chr10:27264333-27264633;Right=chr10:27268868-27269313
chr10	CG	SV	32297886	32301071	150	.	.	ID=2749;Type=deletion;Left=chr10:32297886-32298300+;Right=chr10:32300616-32301071+;Distance=2730;DiscordantMatePairAlignments=150;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72294841 (chr10:32297901-32300633);Frequency=0.88
chr10	CG	SV	32297886	32298300	150	+	.	ID=2749;Type=deletion;Left=chr10:32297886-32298300;Right=chr10:32300616-32301071
chr10	CG	SV	32300616	32301071	150	+	.	ID=2749;Type=deletion;Left=chr10:32297886-32298300;Right=chr10:32300616-32301071
chr10	CG	SV	32745743	32746517	11	.	.	ID=2748;Type=deletion;Left=chr10:32745743-32746216+;Right=chr10:32746081-32746517+;Distance=338;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66549149 (chr10:32745732-32746070);Frequency=1.00
chr10	CG	SV	32745743	32746216	11	+	.	ID=2748;Type=deletion;Left=chr10:32745743-32746216;Right=chr10:32746081-32746517
chr10	CG	SV	32746081	32746517	11	+	.	ID=2748;Type=deletion;Left=chr10:32745743-32746216;Right=chr10:32746081-32746517
chr10	CG	SV	46508391	46508865	10	.	.	ID=2733;Type=deletion;Left=chr10:46508391-46508875+;Right=chr10:46508719-46508865+;Distance=328;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	46508391	46508875	10	+	.	ID=2733;Type=deletion;Left=chr10:46508391-46508875;Right=chr10:46508719-46508865
chr10	CG	SV	46508719	46508865	10	+	.	ID=2733;Type=deletion;Left=chr10:46508391-46508875;Right=chr10:46508719-46508865
chr10	CG	SV	47112701	47113381	63	.	.	ID=2731;Type=deletion;Left=chr10:47112701-47113189+;Right=chr10:47113187-47113381+;Distance=486;DiscordantMatePairAlignments=63;LeftRepeat=(CCCTAA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem CTAACT;RightRepeat=(CCCTAA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem CTAACT;LeftGenes=;RightGenes=;XRef=rs71702761 (chr10:47112617-47113103);Frequency=1.00
chr10	CG	SV	47112701	47113189	63	+	.	ID=2731;Type=deletion;Left=chr10:47112701-47113189;Right=chr10:47113187-47113381
chr10	CG	SV	47113187	47113381	63	+	.	ID=2731;Type=deletion;Left=chr10:47112701-47113189;Right=chr10:47113187-47113381
chr10	CG	SV	49587177	49588039	30	.	.	ID=2730;Type=deletion;Left=chr10:49587177-49587613+;Right=chr10:49587500-49588039+;Distance=323;DiscordantMatePairAlignments=30;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_020945:+;RightGenes=NM_020945:+;XRef=rs66463113 (chr10:49587162-49587485);Frequency=1.00
chr10	CG	SV	49587177	49587613	30	+	.	ID=2730;Type=deletion;Left=chr10:49587177-49587613;Right=chr10:49587500-49588039
chr10	CG	SV	49587500	49588039	30	+	.	ID=2730;Type=deletion;Left=chr10:49587177-49587613;Right=chr10:49587500-49588039
chr10	CG	SV	54111215	54111707	11	.	.	ID=2727;Type=deletion;Left=chr10:54111215-54111741+;Right=chr10:54111532-54111707+;Distance=317;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	54111215	54111741	11	+	.	ID=2727;Type=deletion;Left=chr10:54111215-54111741;Right=chr10:54111532-54111707
chr10	CG	SV	54111532	54111707	11	+	.	ID=2727;Type=deletion;Left=chr10:54111215-54111741;Right=chr10:54111532-54111707
chr10	CG	SV	54453548	54459263	23	.	.	ID=2726;Type=deletion;Left=chr10:54453548-54453912+;Right=chr10:54458835-54459263+;Distance=5287;DiscordantMatePairAlignments=23;LeftRepeat=LTR8:LTR:ERV1;Self chain;RightRepeat=HERV30:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr10	CG	SV	54453548	54453912	23	+	.	ID=2726;Type=deletion;Left=chr10:54453548-54453912;Right=chr10:54458835-54459263
chr10	CG	SV	54458835	54459263	23	+	.	ID=2726;Type=deletion;Left=chr10:54453548-54453912;Right=chr10:54458835-54459263
chr10	CG	SV	54530826	54531620	18	.	.	ID=2725;Type=deletion;Left=chr10:54530826-54531145+;Right=chr10:54531145-54531620+;Distance=319;DiscordantMatePairAlignments=18;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67805788 (chr10:54530826-54531145);Frequency=1.00
chr10	CG	SV	54530826	54531145	18	+	.	ID=2725;Type=deletion;Left=chr10:54530826-54531145;Right=chr10:54531145-54531620
chr10	CG	SV	54531145	54531620	18	+	.	ID=2725;Type=deletion;Left=chr10:54530826-54531145;Right=chr10:54531145-54531620
chr10	CG	SV	58927390	58928404	38	.	.	ID=279;Type=probable-inversion;Left=chr10:58927390-58927664-;Right=chr10:58927992-58928404+;Distance=328;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=MIRb:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr10	CG	SV	58927390	58927664	38	-	.	ID=279;Type=probable-inversion;Left=chr10:58927390-58927664;Right=chr10:58927992-58928404
chr10	CG	SV	58927992	58928404	38	-	.	ID=279;Type=probable-inversion;Left=chr10:58927390-58927664;Right=chr10:58927992-58928404
chr10	CG	SV	58966714	58967476	20	.	.	ID=2722;Type=deletion;Left=chr10:58966714-58967150+;Right=chr10:58967031-58967476+;Distance=317;DiscordantMatePairAlignments=20;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=MIR3:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=rs72065370 (chr10:58966714-58967031);Frequency=0.45
chr10	CG	SV	58966714	58967150	20	+	.	ID=2722;Type=deletion;Left=chr10:58966714-58967150;Right=chr10:58967031-58967476
chr10	CG	SV	58967031	58967476	20	+	.	ID=2722;Type=deletion;Left=chr10:58966714-58967150;Right=chr10:58967031-58967476
chr10	CG	SV	67098538	67099122	10	.	.	ID=278;Type=probable-inversion;Left=chr10:67098538-67098629-;Right=chr10:67098743-67099122+;Distance=114;DiscordantMatePairAlignments=10;LeftRepeat=MER87:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	67098538	67098629	10	-	.	ID=278;Type=probable-inversion;Left=chr10:67098538-67098629;Right=chr10:67098743-67099122
chr10	CG	SV	67098743	67099122	10	-	.	ID=278;Type=probable-inversion;Left=chr10:67098538-67098629;Right=chr10:67098743-67099122
chr10	CG	SV	77925584	77931422	37	.	.	ID=2719;Type=deletion;Left=chr10:77925584-77925984+;Right=chr10:77931031-77931422+;Distance=5447;DiscordantMatePairAlignments=37;LeftRepeat=L1MD:LINE:L1;Self chain;RightRepeat=L1PA16:LINE:L1;Self chain;LeftGenes=NM_032024:+;RightGenes=NM_032024:+;XRef=;Frequency=1.00
chr10	CG	SV	77925584	77925984	37	+	.	ID=2719;Type=deletion;Left=chr10:77925584-77925984;Right=chr10:77931031-77931422
chr10	CG	SV	77931031	77931422	37	+	.	ID=2719;Type=deletion;Left=chr10:77925584-77925984;Right=chr10:77931031-77931422
chr10	CG	SV	78016610	78021973	97	.	.	ID=2718;Type=deletion;Left=chr10:78016610-78017040+;Right=chr10:78021598-78021973+;Distance=4988;DiscordantMatePairAlignments=97;LeftRepeat=L1HS:LINE:L1;L1M5:LINE:L1;Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs72504420 (chr10:78016610-78021598);Frequency=0.53
chr10	CG	SV	78016610	78017040	97	+	.	ID=2718;Type=deletion;Left=chr10:78016610-78017040;Right=chr10:78021598-78021973
chr10	CG	SV	78021598	78021973	97	+	.	ID=2718;Type=deletion;Left=chr10:78016610-78017040;Right=chr10:78021598-78021973
chr10	CG	SV	78470917	78471556	18	.	.	ID=2717;Type=deletion;Left=chr10:78470917-78471266+;Right=chr10:78471236-78471556+;Distance=319;DiscordantMatePairAlignments=18;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;Tandem period 183;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_001014797:-;NM_001161352:-;NM_001161353:-;NM_002247:-;RightGenes=NM_001014797:-;NM_001161352:-;NM_001161353:-;NM_002247:-;XRef=rs67173538 (chr10:78470908-78471227);Frequency=1.00
chr10	CG	SV	78470917	78471266	18	+	.	ID=2717;Type=deletion;Left=chr10:78470917-78471266;Right=chr10:78471236-78471556
chr10	CG	SV	78471236	78471556	18	+	.	ID=2717;Type=deletion;Left=chr10:78470917-78471266;Right=chr10:78471236-78471556
chr10	CG	SV	80762188	80763025	133	.	.	ID=2716;Type=deletion;Left=chr10:80762188-80762617+;Right=chr10:80762786-80763025+;Distance=598;DiscordantMatePairAlignments=133;LeftRepeat=Self chain;RightRepeat=L1ME3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr10	CG	SV	80762188	80762617	133	+	.	ID=2716;Type=deletion;Left=chr10:80762188-80762617;Right=chr10:80762786-80763025
chr10	CG	SV	80762786	80763025	133	+	.	ID=2716;Type=deletion;Left=chr10:80762188-80762617;Right=chr10:80762786-80763025
chr10	CG	SV	82727731	82728525	15	.	.	ID=2715;Type=deletion;Left=chr10:82727731-82728176+;Right=chr10:82728050-82728525+;Distance=319;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72199353 (chr10:82727717-82728036);Frequency=0.35
chr10	CG	SV	82727731	82728176	15	+	.	ID=2715;Type=deletion;Left=chr10:82727731-82728176;Right=chr10:82728050-82728525
chr10	CG	SV	82728050	82728525	15	+	.	ID=2715;Type=deletion;Left=chr10:82727731-82728176;Right=chr10:82728050-82728525
chr10	CG	SV	84227969	84228939	166	.	.	ID=2714;Type=deletion;Left=chr10:84227969-84228448+;Right=chr10:84228462-84228939+;Distance=493;DiscordantMatePairAlignments=166;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;RightGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;XRef=rs67681028 (chr10:84227969-84228462);Frequency=0.82
chr10	CG	SV	84227969	84228448	166	+	.	ID=2714;Type=deletion;Left=chr10:84227969-84228448;Right=chr10:84228462-84228939
chr10	CG	SV	84228462	84228939	166	+	.	ID=2714;Type=deletion;Left=chr10:84227969-84228448;Right=chr10:84228462-84228939
chr10	CG	SV	89265777	89266718	44	.	.	ID=2712;Type=deletion;Left=chr10:89265777-89266231+;Right=chr10:89266548-89266718+;Distance=771;DiscordantMatePairAlignments=44;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_004897:+;RightGenes=NM_004897:+;XRef=;Frequency=0.71
chr10	CG	SV	89265777	89266231	44	+	.	ID=2712;Type=deletion;Left=chr10:89265777-89266231;Right=chr10:89266548-89266718
chr10	CG	SV	89266548	89266718	44	+	.	ID=2712;Type=deletion;Left=chr10:89265777-89266231;Right=chr10:89266548-89266718
chr10	CG	SV	92959211	92959854	24	.	.	ID=2711;Type=deletion;Left=chr10:92959211-92959714+;Right=chr10:92959549-92959854+;Distance=338;DiscordantMatePairAlignments=24;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66483053 (chr10:92959205-92959543);Frequency=1.00
chr10	CG	SV	92959211	92959714	24	+	.	ID=2711;Type=deletion;Left=chr10:92959211-92959714;Right=chr10:92959549-92959854
chr10	CG	SV	92959549	92959854	24	+	.	ID=2711;Type=deletion;Left=chr10:92959211-92959714;Right=chr10:92959549-92959854
chr10	CG	SV	94124579	94127957	38	.	.	ID=2710;Type=deletion;Left=chr10:94124579-94125017+;Right=chr10:94127633-94127957+;Distance=3054;DiscordantMatePairAlignments=38;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=rs66665405 (chr10:94124594-94127633);Frequency=1.00
chr10	CG	SV	94124579	94125017	38	+	.	ID=2710;Type=deletion;Left=chr10:94124579-94125017;Right=chr10:94127633-94127957
chr10	CG	SV	94127633	94127957	38	+	.	ID=2710;Type=deletion;Left=chr10:94124579-94125017;Right=chr10:94127633-94127957
chr10	CG	SV	95535467	95536947	104	.	.	ID=2709;Type=deletion;Left=chr10:95535467-95535825+;Right=chr10:95536485-95536947+;Distance=1018;DiscordantMatePairAlignments=104;LeftRepeat=L4:LINE:RTE;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=NM_005097:+;RightGenes=NM_005097:+;XRef=;Frequency=1.00
chr10	CG	SV	95535467	95535825	104	+	.	ID=2709;Type=deletion;Left=chr10:95535467-95535825;Right=chr10:95536485-95536947
chr10	CG	SV	95536485	95536947	104	+	.	ID=2709;Type=deletion;Left=chr10:95535467-95535825;Right=chr10:95536485-95536947
chr10	CG	SV	97196774	97198015	31	.	.	ID=1075;Type=distal-duplication;Left=chr10:97196774-97196908-;Right=chr10:97197649-97198015-;Distance=1107;DiscordantMatePairAlignments=31;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_015385:-;NM_024991:-;RightGenes=NM_015385:-;NM_024991:-;XRef=;Frequency=0.76
chr10	CG	SV	97196774	97196908	31	-	.	ID=1075;Type=distal-duplication;Left=chr10:97196774-97196908;Right=chr10:97197649-97198015
chr10	CG	SV	97197649	97198015	31	-	.	ID=1075;Type=distal-duplication;Left=chr10:97196774-97196908;Right=chr10:97197649-97198015
chr10	CG	SV	97197045	97198457	60	.	.	ID=2708;Type=distal-duplication;Left=chr10:97197045-97197318+;Right=chr10:97198018-97198457+;Distance=973;DiscordantMatePairAlignments=60;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=NM_015385:-;NM_024991:-;RightGenes=NM_015385:-;NM_024991:-;XRef=rs71977870 (chr10:97197044-97198017);Frequency=0.76
chr10	CG	SV	97197045	97197318	60	+	.	ID=2708;Type=distal-duplication;Left=chr10:97197045-97197318;Right=chr10:97198018-97198457
chr10	CG	SV	97198018	97198457	60	+	.	ID=2708;Type=distal-duplication;Left=chr10:97197045-97197318;Right=chr10:97198018-97198457
chr10	CG	SV	99024860	99027898	235	.	.	ID=2707;Type=deletion;Left=chr10:99024860-99025307+;Right=chr10:99027394-99027898+;Distance=2534;DiscordantMatePairAlignments=235;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=NM_032900:-;RightGenes=NM_032900:-;XRef=rs67953540 (chr10:99024853-99027387);Frequency=1.00
chr10	CG	SV	99024860	99025307	235	+	.	ID=2707;Type=deletion;Left=chr10:99024860-99025307;Right=chr10:99027394-99027898
chr10	CG	SV	99027394	99027898	235	+	.	ID=2707;Type=deletion;Left=chr10:99024860-99025307;Right=chr10:99027394-99027898
chr10	CG	SV	102148300	102149805	36	.	.	ID=2706;Type=deletion;Left=chr10:102148300-102148596+;Right=chr10:102149529-102149805+;Distance=1229;DiscordantMatePairAlignments=36;LeftRepeat=FLAM_C:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66913242 (chr10:102148298-102149527);Frequency=0.18
chr10	CG	SV	102148300	102148596	36	+	.	ID=2706;Type=deletion;Left=chr10:102148300-102148596;Right=chr10:102149529-102149805
chr10	CG	SV	102149529	102149805	36	+	.	ID=2706;Type=deletion;Left=chr10:102148300-102148596;Right=chr10:102149529-102149805
chr10	CG	SV	107242992	107243775	49	.	.	ID=2705;Type=deletion;Left=chr10:107242992-107243454+;Right=chr10:107243345-107243775+;Distance=353;DiscordantMatePairAlignments=49;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67319612 (chr10:107242992-107243345);Frequency=0.76
chr10	CG	SV	107242992	107243454	49	+	.	ID=2705;Type=deletion;Left=chr10:107242992-107243454;Right=chr10:107243345-107243775
chr10	CG	SV	107243345	107243775	49	+	.	ID=2705;Type=deletion;Left=chr10:107242992-107243454;Right=chr10:107243345-107243775
chr10	CG	SV	107940674	107942009	213	.	.	ID=2704;Type=deletion;Left=chr10:107940674-107941142+;Right=chr10:107941587-107942009+;Distance=913;DiscordantMatePairAlignments=213;LeftRepeat=MER5A1:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67619770 (chr10:107940674-107941587);Frequency=0.94
chr10	CG	SV	107940674	107941142	213	+	.	ID=2704;Type=deletion;Left=chr10:107940674-107941142;Right=chr10:107941587-107942009
chr10	CG	SV	107941587	107942009	213	+	.	ID=2704;Type=deletion;Left=chr10:107940674-107941142;Right=chr10:107941587-107942009
chr10	CG	SV	108020311	108023015	101	.	.	ID=2703;Type=deletion;Left=chr10:108020311-108020750+;Right=chr10:108022535-108023015+;Distance=2224;DiscordantMatePairAlignments=101;LeftRepeat=MER52-int:LTR:ERV1;RightRepeat=MER52-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr10	CG	SV	108020311	108020750	101	+	.	ID=2703;Type=deletion;Left=chr10:108020311-108020750;Right=chr10:108022535-108023015
chr10	CG	SV	108022535	108023015	101	+	.	ID=2703;Type=deletion;Left=chr10:108020311-108020750;Right=chr10:108022535-108023015
chr10	CG	SV	111026381	111027120	19	.	.	ID=2701;Type=deletion;Left=chr10:111026381-111026884+;Right=chr10:111026701-111027120+;Distance=320;DiscordantMatePairAlignments=19;LeftRepeat=L3:LINE:CR1;Self chain;RightRepeat=L3:LINE:CR1;Self chain;LeftGenes=;RightGenes=;XRef=rs6144084 (chr10:111026367-111026687);Frequency=0.76
chr10	CG	SV	111026381	111026884	19	+	.	ID=2701;Type=deletion;Left=chr10:111026381-111026884;Right=chr10:111026701-111027120
chr10	CG	SV	111026701	111027120	19	+	.	ID=2701;Type=deletion;Left=chr10:111026381-111026884;Right=chr10:111026701-111027120
chr10	CG	SV	111562114	111568690	67	.	.	ID=2700;Type=deletion;Left=chr10:111562114-111562615+;Right=chr10:111568220-111568690+;Distance=6106;DiscordantMatePairAlignments=67;LeftRepeat=L1HS:LINE:L1;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66614434 (chr10:111562100-111568206);Frequency=1.00
chr10	CG	SV	111562114	111562615	67	+	.	ID=2700;Type=deletion;Left=chr10:111562114-111562615;Right=chr10:111568220-111568690
chr10	CG	SV	111568220	111568690	67	+	.	ID=2700;Type=deletion;Left=chr10:111562114-111562615;Right=chr10:111568220-111568690
chr10	CG	SV	114102173	114107074	172	.	.	ID=2699;Type=deletion;Left=chr10:114102173-114102667+;Right=chr10:114106650-114107074+;Distance=4477;DiscordantMatePairAlignments=172;LeftRepeat=AluSx:SINE:Alu;RightRepeat=MIRm:SINE:MIR;LeftGenes=NR_028134:-;RightGenes=;XRef=rs68033286 (chr10:114102171-114106648);Frequency=0.88
chr10	CG	SV	114102173	114102667	172	+	.	ID=2699;Type=deletion;Left=chr10:114102173-114102667;Right=chr10:114106650-114107074
chr10	CG	SV	114106650	114107074	172	+	.	ID=2699;Type=deletion;Left=chr10:114102173-114102667;Right=chr10:114106650-114107074
chr10	CG	SV	114147778	114148592	15	.	.	ID=2698;Type=deletion;Left=chr10:114147778-114148229+;Right=chr10:114148116-114148592+;Distance=338;DiscordantMatePairAlignments=15;LeftRepeat=L1ME4a:LINE:L1;RightRepeat=;LeftGenes=NM_016234:+;NM_203379:+;NM_203380:+;RightGenes=NM_016234:+;NM_203379:+;NM_203380:+;XRef=rs67206921 (chr10:114147774-114148112);Frequency=1.00
chr10	CG	SV	114147778	114148229	15	+	.	ID=2698;Type=deletion;Left=chr10:114147778-114148229;Right=chr10:114148116-114148592
chr10	CG	SV	114148116	114148592	15	+	.	ID=2698;Type=deletion;Left=chr10:114147778-114148229;Right=chr10:114148116-114148592
chr10	CG	SV	119624273	119625048	35	.	.	ID=2696;Type=deletion;Left=chr10:119624273-119624740+;Right=chr10:119624604-119625048+;Distance=331;DiscordantMatePairAlignments=35;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67090158 (chr10:119624264-119624595);Frequency=1.00
chr10	CG	SV	119624273	119624740	35	+	.	ID=2696;Type=deletion;Left=chr10:119624273-119624740;Right=chr10:119624604-119625048
chr10	CG	SV	119624604	119625048	35	+	.	ID=2696;Type=deletion;Left=chr10:119624273-119624740;Right=chr10:119624604-119625048
chr10	CG	SV	122216763	122219137	38	.	.	ID=2695;Type=deletion;Left=chr10:122216763-122217239+;Right=chr10:122218911-122219137+;Distance=2148;DiscordantMatePairAlignments=38;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_001030059:+;RightGenes=NM_001030059:+;XRef=rs66889305 (chr10:122216588-122218737);Frequency=1.00
chr10	CG	SV	122216763	122217239	38	+	.	ID=2695;Type=deletion;Left=chr10:122216763-122217239;Right=chr10:122218911-122219137
chr10	CG	SV	122218911	122219137	38	+	.	ID=2695;Type=deletion;Left=chr10:122216763-122217239;Right=chr10:122218911-122219137
chr10	CG	SV	123479178	123479971	10	.	.	ID=2694;Type=deletion;Left=chr10:123479178-123479454+;Right=chr10:123479492-123479971+;Distance=314;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10523131 (chr10:123479170-123479484);Frequency=0.24
chr10	CG	SV	123479178	123479454	10	+	.	ID=2694;Type=deletion;Left=chr10:123479178-123479454;Right=chr10:123479492-123479971
chr10	CG	SV	123479492	123479971	10	+	.	ID=2694;Type=deletion;Left=chr10:123479178-123479454;Right=chr10:123479492-123479971
chr10	CG	SV	127180167	127181171	43	.	.	ID=277;Type=complex;Left=chr10:127180167-127180407-;Right=chr10:127180684-127181171+;Distance=277;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr10	CG	SV	127180167	127180407	43	-	.	ID=277;Type=complex;Left=chr10:127180167-127180407;Right=chr10:127180684-127181171
chr10	CG	SV	127180684	127181171	43	-	.	ID=277;Type=complex;Left=chr10:127180167-127180407;Right=chr10:127180684-127181171
chr10	CG	SV	127180967	127187217	199	.	.	ID=4469;Type=complex;Left=chr10:127180967-127181531+;Right=chr10:127186776-127187217-;Distance=6250;DiscordantMatePairAlignments=199;LeftRepeat=Alu:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr10	CG	SV	127180967	127181531	199	+	.	ID=4469;Type=complex;Left=chr10:127180967-127181531;Right=chr10:127186776-127187217
chr10	CG	SV	127186776	127187217	199	+	.	ID=4469;Type=complex;Left=chr10:127180967-127181531;Right=chr10:127186776-127187217
chr10	CG	SV	127181647	127187580	37	.	.	ID=2692;Type=complex;Left=chr10:127181647-127182098+;Right=chr10:127187226-127187580+;Distance=5579;DiscordantMatePairAlignments=37;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66681237 (chr10:127181645-127187224);Frequency=0.82
chr10	CG	SV	127181647	127182098	37	+	.	ID=2692;Type=complex;Left=chr10:127181647-127182098;Right=chr10:127187226-127187580
chr10	CG	SV	127187226	127187580	37	+	.	ID=2692;Type=complex;Left=chr10:127181647-127182098;Right=chr10:127187226-127187580
chr10	CG	SV	127585198	127597597	56	.	.	ID=276;Type=probable-inversion;Left=chr10:127585198-127585578-;Right=chr10:127597297-127597597+;Distance=11719;DiscordantMatePairAlignments=56;LeftRepeat=MIRb:SINE:MIR;SegDup;Self chain;RightRepeat=MIRb:SINE:MIR;SegDup;Self chain;LeftGenes=NM_145235:+;RightGenes=NM_145235:+;XRef=;Frequency=0.59
chr10	CG	SV	127585198	127585578	56	-	.	ID=276;Type=probable-inversion;Left=chr10:127585198-127585578;Right=chr10:127597297-127597597
chr10	CG	SV	127597297	127597597	56	-	.	ID=276;Type=probable-inversion;Left=chr10:127585198-127585578;Right=chr10:127597297-127597597
chr10	CG	SV	127735179	127736457	191	.	.	ID=2690;Type=deletion;Left=chr10:127735179-127735650+;Right=chr10:127735979-127736457+;Distance=800;DiscordantMatePairAlignments=191;LeftRepeat=;RightRepeat=;LeftGenes=NM_003474:-;NM_021641:-;RightGenes=NM_003474:-;NM_021641:-;XRef=rs67650775 (chr10:127735174-127735974);Frequency=0.94
chr10	CG	SV	127735179	127735650	191	+	.	ID=2690;Type=deletion;Left=chr10:127735179-127735650;Right=chr10:127735979-127736457
chr10	CG	SV	127735979	127736457	191	+	.	ID=2690;Type=deletion;Left=chr10:127735179-127735650;Right=chr10:127735979-127736457
chr10	CG	SV	128096475	128097353	33	.	.	ID=2689;Type=deletion;Left=chr10:128096475-128096934+;Right=chr10:128096789-128097353+;Distance=314;DiscordantMatePairAlignments=33;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10527649 (chr10:128096475-128096789);Frequency=1.00
chr10	CG	SV	128096475	128096934	33	+	.	ID=2689;Type=deletion;Left=chr10:128096475-128096934;Right=chr10:128096789-128097353
chr10	CG	SV	128096789	128097353	33	+	.	ID=2689;Type=deletion;Left=chr10:128096475-128096934;Right=chr10:128096789-128097353
chr10	CG	SV	131485170	131485900	21	.	.	ID=2688;Type=deletion;Left=chr10:131485170-131485726+;Right=chr10:131485466-131485900+;Distance=296;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr10	CG	SV	131485170	131485726	21	+	.	ID=2688;Type=deletion;Left=chr10:131485170-131485726;Right=chr10:131485466-131485900
chr10	CG	SV	131485466	131485900	21	+	.	ID=2688;Type=deletion;Left=chr10:131485170-131485726;Right=chr10:131485466-131485900
chr10	CG	SV	132048491	132049436	41	.	.	ID=2687;Type=deletion;Left=chr10:132048491-132048832+;Right=chr10:132048955-132049436+;Distance=464;DiscordantMatePairAlignments=41;LeftRepeat=(TC)n:Simple_repeat:Simple_repeat;Tandem CTCTCT;Tandem period 10;Tandem period 14;Tandem period 8;RightRepeat=(TC)n:Simple_repeat:Simple_repeat;Tandem CTCTCT;Tandem period 10;Tandem period 14;Tandem period 8;LeftGenes=;RightGenes=;XRef=rs33996726 (chr10:132048415-132048801);Frequency=1.00
chr10	CG	SV	132048491	132048832	41	+	.	ID=2687;Type=deletion;Left=chr10:132048491-132048832;Right=chr10:132048955-132049436
chr10	CG	SV	132048955	132049436	41	+	.	ID=2687;Type=deletion;Left=chr10:132048491-132048832;Right=chr10:132048955-132049436
chr10	CG	SV	132147609	132148466	22	.	.	ID=2686;Type=deletion;Left=chr10:132147609-132147762+;Right=chr10:132148180-132148466+;Distance=571;DiscordantMatePairAlignments=22;LeftRepeat=G-rich:Low_complexity:Low_complexity;Self chain;Tandem period 26;Tandem period 30;RightRepeat=Self chain;Tandem period 26;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr10	CG	SV	132147609	132147762	22	+	.	ID=2686;Type=deletion;Left=chr10:132147609-132147762;Right=chr10:132148180-132148466
chr10	CG	SV	132148180	132148466	22	+	.	ID=2686;Type=deletion;Left=chr10:132147609-132147762;Right=chr10:132148180-132148466
chr10	CG	SV	132748479	132749279	53	.	.	ID=2685;Type=deletion;Left=chr10:132748479-132748983+;Right=chr10:132748828-132749279+;Distance=349;DiscordantMatePairAlignments=53;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67563509 (chr10:132748461-132748810);Frequency=0.76
chr10	CG	SV	132748479	132748983	53	+	.	ID=2685;Type=deletion;Left=chr10:132748479-132748983;Right=chr10:132748828-132749279
chr10	CG	SV	132748828	132749279	53	+	.	ID=2685;Type=deletion;Left=chr10:132748479-132748983;Right=chr10:132748828-132749279
chr10	CG	SV	133501920	133502333	51	.	.	ID=1071;Type=tandem-duplication;Left=chr10:133501920-133502116-;Right=chr10:133502115-133502333-;Distance=217;DiscordantMatePairAlignments=51;LeftRepeat=L1MD2:LINE:L1;Self chain;Tandem period 60;RightRepeat=L1MD2:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr10	CG	SV	133501920	133502116	51	-	.	ID=1071;Type=tandem-duplication;Left=chr10:133501920-133502116;Right=chr10:133502115-133502333
chr10	CG	SV	133502115	133502333	51	-	.	ID=1071;Type=tandem-duplication;Left=chr10:133501920-133502116;Right=chr10:133502115-133502333
chr10	CG	SV	134577599	134578753	97	.	.	ID=2684;Type=deletion;Left=chr10:134577599-134577979+;Right=chr10:134578325-134578753+;Distance=726;DiscordantMatePairAlignments=97;LeftRepeat=Self chain;Tandem period 33;RightRepeat=Self chain;Tandem period 33;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr10	CG	SV	134577599	134577979	97	+	.	ID=2684;Type=deletion;Left=chr10:134577599-134577979;Right=chr10:134578325-134578753
chr10	CG	SV	134578325	134578753	97	+	.	ID=2684;Type=deletion;Left=chr10:134577599-134577979;Right=chr10:134578325-134578753
chr10	CG	SV	134954795	134956395	189	.	.	ID=2683;Type=deletion;Left=chr10:134954795-134955235+;Right=chr10:134955986-134956395+;Distance=1191;DiscordantMatePairAlignments=189;LeftRepeat=Self chain;Tandem period 188;Tandem period 94;RightRepeat=Self chain;LeftGenes=NM_006659:-;RightGenes=NM_006659:-;XRef=rs72187097 (chr10:134954841-134955956);Frequency=0.88
chr10	CG	SV	134954795	134955235	189	+	.	ID=2683;Type=deletion;Left=chr10:134954795-134955235;Right=chr10:134955986-134956395
chr10	CG	SV	134955986	134956395	189	+	.	ID=2683;Type=deletion;Left=chr10:134954795-134955235;Right=chr10:134955986-134956395
chr11	CG	SV	1169153	1170150	20	.	.	ID=1061;Type=tandem-duplication;Left=chr11:1169153-1169432-;Right=chr11:1169777-1170150-;Distance=718;DiscordantMatePairAlignments=20;LeftRepeat=(CCA)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 24;Tandem period 48;Tandem period 96;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	1169153	1169432	20	-	.	ID=1061;Type=tandem-duplication;Left=chr11:1169153-1169432;Right=chr11:1169777-1170150
chr11	CG	SV	1169777	1170150	20	-	.	ID=1061;Type=tandem-duplication;Left=chr11:1169153-1169432;Right=chr11:1169777-1170150
chr11	CG	SV	1389875	1390637	15	.	.	ID=2678;Type=deletion;Left=chr11:1389875-1390305+;Right=chr11:1390307-1390637+;Distance=432;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem period 36;RightRepeat=Self chain;LeftGenes=NM_003957:+;RightGenes=NM_003957:+;XRef=;Frequency=0.65
chr11	CG	SV	1389875	1390305	15	+	.	ID=2678;Type=deletion;Left=chr11:1389875-1390305;Right=chr11:1390307-1390637
chr11	CG	SV	1390307	1390637	15	+	.	ID=2678;Type=deletion;Left=chr11:1389875-1390305;Right=chr11:1390307-1390637
chr11	CG	SV	1619610	1620452	86	.	.	ID=2677;Type=deletion;Left=chr11:1619610-1620148+;Right=chr11:1620143-1620452+;Distance=533;DiscordantMatePairAlignments=86;LeftRepeat=(CACCC)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 16;Tandem period 31;RightRepeat=(CACCC)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 16;Tandem period 31;LeftGenes=NM_053005:-;RightGenes=NM_053005:-;XRef=;Frequency=0.94
chr11	CG	SV	1619610	1620148	86	+	.	ID=2677;Type=deletion;Left=chr11:1619610-1620148;Right=chr11:1620143-1620452
chr11	CG	SV	1620143	1620452	86	+	.	ID=2677;Type=deletion;Left=chr11:1619610-1620148;Right=chr11:1620143-1620452
chr11	CG	SV	1871838	1893953	124	.	.	ID=2675;Type=deletion;Left=chr11:1871838-1872209+;Right=chr11:1893531-1893953+;Distance=21693;DiscordantMatePairAlignments=124;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	1871838	1872209	124	+	.	ID=2675;Type=deletion;Left=chr11:1871838-1872209;Right=chr11:1893531-1893953
chr11	CG	SV	1893531	1893953	124	+	.	ID=2675;Type=deletion;Left=chr11:1871838-1872209;Right=chr11:1893531-1893953
chr11	CG	SV	5716663	5719402	75	.	.	ID=2670;Type=deletion;Left=chr11:5716663-5717053+;Right=chr11:5718941-5719402+;Distance=2278;DiscordantMatePairAlignments=75;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr11	CG	SV	5716663	5717053	75	+	.	ID=2670;Type=deletion;Left=chr11:5716663-5717053;Right=chr11:5718941-5719402
chr11	CG	SV	5718941	5719402	75	+	.	ID=2670;Type=deletion;Left=chr11:5716663-5717053;Right=chr11:5718941-5719402
chr11	CG	SV	5741151	5766234	62	.	.	ID=2669;Type=deletion;Left=chr11:5741151-5741527+;Right=chr11:5765860-5766234+;Distance=24709;DiscordantMatePairAlignments=62;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001001913:-;XRef=;Frequency=0.47
chr11	CG	SV	5741151	5741527	62	+	.	ID=2669;Type=deletion;Left=chr11:5741151-5741527;Right=chr11:5765860-5766234
chr11	CG	SV	5765860	5766234	62	+	.	ID=2669;Type=deletion;Left=chr11:5741151-5741527;Right=chr11:5765860-5766234
chr11	CG	SV	7673491	7674254	33	.	.	ID=2666;Type=deletion;Left=chr11:7673491-7673917+;Right=chr11:7673807-7674254+;Distance=316;DiscordantMatePairAlignments=33;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_198185:-;RightGenes=NM_198185:-;XRef=rs6144200 (chr11:7673491-7673807);Frequency=1.00
chr11	CG	SV	7673491	7673917	33	+	.	ID=2666;Type=deletion;Left=chr11:7673491-7673917;Right=chr11:7673807-7674254
chr11	CG	SV	7673807	7674254	33	+	.	ID=2666;Type=deletion;Left=chr11:7673491-7673917;Right=chr11:7673807-7674254
chr11	CG	SV	7945362	7946717	20	.	.	ID=2664;Type=deletion;Left=chr11:7945362-7945754+;Right=chr11:7946397-7946717+;Distance=1035;DiscordantMatePairAlignments=20;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	7945362	7945754	20	+	.	ID=2664;Type=deletion;Left=chr11:7945362-7945754;Right=chr11:7946397-7946717
chr11	CG	SV	7946397	7946717	20	+	.	ID=2664;Type=deletion;Left=chr11:7945362-7945754;Right=chr11:7946397-7946717
chr11	CG	SV	9280318	9281591	21	.	.	ID=2663;Type=deletion;Left=chr11:9280318-9280724+;Right=chr11:9281326-9281591+;Distance=1008;DiscordantMatePairAlignments=21;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001165030:-;NM_015012:-;NR_028491:-;RightGenes=NM_001165030:-;NM_015012:-;NR_028491:-;XRef=rs72400718 (chr11:9280262-9281272);Frequency=0.71
chr11	CG	SV	9280318	9280724	21	+	.	ID=2663;Type=deletion;Left=chr11:9280318-9280724;Right=chr11:9281326-9281591
chr11	CG	SV	9281326	9281591	21	+	.	ID=2663;Type=deletion;Left=chr11:9280318-9280724;Right=chr11:9281326-9281591
chr11	CG	SV	9751223	9751983	11	.	.	ID=2662;Type=deletion;Left=chr11:9751223-9751520+;Right=chr11:9751550-9751983+;Distance=327;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs10522438 (chr11:9751162-9751488);Frequency=0.53
chr11	CG	SV	9751223	9751520	11	+	.	ID=2662;Type=deletion;Left=chr11:9751223-9751520;Right=chr11:9751550-9751983
chr11	CG	SV	9751550	9751983	11	+	.	ID=2662;Type=deletion;Left=chr11:9751223-9751520;Right=chr11:9751550-9751983
chr11	CG	SV	12109134	12109784	15	.	.	ID=2660;Type=complex;Left=chr11:12109134-12109615+;Right=chr11:12109458-12109784+;Distance=324;DiscordantMatePairAlignments=15;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_014632:+;RightGenes=NM_014632:+;XRef=rs66607256 (chr11:12109120-12109444);Frequency=0.88
chr11	CG	SV	12109134	12109615	15	+	.	ID=2660;Type=complex;Left=chr11:12109134-12109615;Right=chr11:12109458-12109784
chr11	CG	SV	12109458	12109784	15	+	.	ID=2660;Type=complex;Left=chr11:12109134-12109615;Right=chr11:12109458-12109784
chr11	CG	SV	12109134	12109970	11	.	.	ID=2661;Type=complex;Left=chr11:12109134-12109507+;Right=chr11:12109458-12109970+;Distance=324;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_014632:+;RightGenes=NM_014632:+;XRef=rs72288281 (chr11:12109134-12109458);Frequency=0.88
chr11	CG	SV	12109134	12109507	11	+	.	ID=2661;Type=complex;Left=chr11:12109134-12109507;Right=chr11:12109458-12109970
chr11	CG	SV	12109458	12109970	11	+	.	ID=2661;Type=complex;Left=chr11:12109134-12109507;Right=chr11:12109458-12109970
chr11	CG	SV	14304901	14305623	21	.	.	ID=2658;Type=deletion;Left=chr11:14304901-14305294+;Right=chr11:14305217-14305623+;Distance=316;DiscordantMatePairAlignments=21;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001102669:-;NM_012250:-;RightGenes=NM_001102669:-;NM_012250:-;XRef=rs67416901 (chr11:14304901-14305217);Frequency=0.94
chr11	CG	SV	14304901	14305294	21	+	.	ID=2658;Type=deletion;Left=chr11:14304901-14305294;Right=chr11:14305217-14305623
chr11	CG	SV	14305217	14305623	21	+	.	ID=2658;Type=deletion;Left=chr11:14304901-14305294;Right=chr11:14305217-14305623
chr11	CG	SV	16554154	16554900	18	.	.	ID=2657;Type=deletion;Left=chr11:16554154-16554640+;Right=chr11:16554477-16554900+;Distance=323;DiscordantMatePairAlignments=18;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6144233 (chr11:16554154-16554477);Frequency=1.00
chr11	CG	SV	16554154	16554640	18	+	.	ID=2657;Type=deletion;Left=chr11:16554154-16554640;Right=chr11:16554477-16554900
chr11	CG	SV	16554477	16554900	18	+	.	ID=2657;Type=deletion;Left=chr11:16554154-16554640;Right=chr11:16554477-16554900
chr11	CG	SV	16952754	16953555	36	.	.	ID=2656;Type=deletion;Left=chr11:16952754-16953113+;Right=chr11:16953178-16953555+;Distance=424;DiscordantMatePairAlignments=36;LeftRepeat=Self chain;RightRepeat=L1MD2:LINE:L1;Self chain;LeftGenes=NM_175058:-;RightGenes=NM_175058:-;XRef=rs72068241 (chr11:16952745-16953169);Frequency=0.88
chr11	CG	SV	16952754	16953113	36	+	.	ID=2656;Type=deletion;Left=chr11:16952754-16953113;Right=chr11:16953178-16953555
chr11	CG	SV	16953178	16953555	36	+	.	ID=2656;Type=deletion;Left=chr11:16952754-16953113;Right=chr11:16953178-16953555
chr11	CG	SV	20801133	20806995	159	.	.	ID=2654;Type=deletion;Left=chr11:20801133-20801640+;Right=chr11:20806526-20806995+;Distance=5393;DiscordantMatePairAlignments=159;LeftRepeat=;RightRepeat=;LeftGenes=NM_006157:+;NM_201551:+;RightGenes=NM_006157:+;NM_201551:+;XRef=;Frequency=0.20
chr11	CG	SV	20801133	20801640	159	+	.	ID=2654;Type=deletion;Left=chr11:20801133-20801640;Right=chr11:20806526-20806995
chr11	CG	SV	20806526	20806995	159	+	.	ID=2654;Type=deletion;Left=chr11:20801133-20801640;Right=chr11:20806526-20806995
chr11	CG	SV	24399729	24409233	81	.	.	ID=2653;Type=deletion;Left=chr11:24399729-24400130+;Right=chr11:24408863-24409233+;Distance=9134;DiscordantMatePairAlignments=81;LeftRepeat=;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr11	CG	SV	24399729	24400130	81	+	.	ID=2653;Type=deletion;Left=chr11:24399729-24400130;Right=chr11:24408863-24409233
chr11	CG	SV	24408863	24409233	81	+	.	ID=2653;Type=deletion;Left=chr11:24399729-24400130;Right=chr11:24408863-24409233
chr11	CG	SV	27264462	27264990	13	.	.	ID=2651;Type=deletion;Left=chr11:27264462-27264939+;Right=chr11:27264795-27264990+;Distance=333;DiscordantMatePairAlignments=13;LeftRepeat=AluYb9:SINE:Alu;Tandem T;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr11	CG	SV	27264462	27264939	13	+	.	ID=2651;Type=deletion;Left=chr11:27264462-27264939;Right=chr11:27264795-27264990
chr11	CG	SV	27264795	27264990	13	+	.	ID=2651;Type=deletion;Left=chr11:27264462-27264939;Right=chr11:27264795-27264990
chr11	CG	SV	27613839	27614574	29	.	.	ID=2650;Type=deletion;Left=chr11:27613839-27614289+;Right=chr11:27614171-27614574+;Distance=332;DiscordantMatePairAlignments=29;LeftRepeat=MER61E:LTR:ERV1;RightRepeat=MER61E:LTR:ERV1;LeftGenes=NR_002832:+;RightGenes=NR_002832:+;XRef=rs10525413 (chr11:27613839-27614171);Frequency=0.88
chr11	CG	SV	27613839	27614289	29	+	.	ID=2650;Type=deletion;Left=chr11:27613839-27614289;Right=chr11:27614171-27614574
chr11	CG	SV	27614171	27614574	29	+	.	ID=2650;Type=deletion;Left=chr11:27613839-27614289;Right=chr11:27614171-27614574
chr11	CG	SV	29096068	29097181	10	.	.	ID=2649;Type=deletion;Left=chr11:29096068-29096542+;Right=chr11:29097017-29097181+;Distance=949;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr11	CG	SV	29096068	29096542	10	+	.	ID=2649;Type=deletion;Left=chr11:29096068-29096542;Right=chr11:29097017-29097181
chr11	CG	SV	29097017	29097181	10	+	.	ID=2649;Type=deletion;Left=chr11:29096068-29096542;Right=chr11:29097017-29097181
chr11	CG	SV	29924155	29925384	59	.	.	ID=2648;Type=deletion;Left=chr11:29924155-29924541+;Right=chr11:29925043-29925384+;Distance=888;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72176999 (chr11:29924154-29925042);Frequency=0.71
chr11	CG	SV	29924155	29924541	59	+	.	ID=2648;Type=deletion;Left=chr11:29924155-29924541;Right=chr11:29925043-29925384
chr11	CG	SV	29925043	29925384	59	+	.	ID=2648;Type=deletion;Left=chr11:29924155-29924541;Right=chr11:29925043-29925384
chr11	CG	SV	31109023	31109795	22	.	.	ID=2647;Type=deletion;Left=chr11:31109023-31109454+;Right=chr11:31109339-31109795+;Distance=316;DiscordantMatePairAlignments=22;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=AluYb8:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72108819 (chr11:31109007-31109323);Frequency=0.76
chr11	CG	SV	31109023	31109454	22	+	.	ID=2647;Type=deletion;Left=chr11:31109023-31109454;Right=chr11:31109339-31109795
chr11	CG	SV	31109339	31109795	22	+	.	ID=2647;Type=deletion;Left=chr11:31109023-31109454;Right=chr11:31109339-31109795
chr11	CG	SV	33494263	33495074	41	.	.	ID=2645;Type=deletion;Left=chr11:33494263-33494685+;Right=chr11:33494586-33495074+;Distance=323;DiscordantMatePairAlignments=41;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71016499 (chr11:33494263-33494586);Frequency=0.71
chr11	CG	SV	33494263	33494685	41	+	.	ID=2645;Type=deletion;Left=chr11:33494263-33494685;Right=chr11:33494586-33495074
chr11	CG	SV	33494586	33495074	41	+	.	ID=2645;Type=deletion;Left=chr11:33494263-33494685;Right=chr11:33494586-33495074
chr11	CG	SV	34684699	34685612	32	.	.	ID=2644;Type=deletion;Left=chr11:34684699-34685119+;Right=chr11:34685194-34685612+;Distance=495;DiscordantMatePairAlignments=32;LeftRepeat=L1MA2:LINE:L1;RightRepeat=L1MA2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr11	CG	SV	34684699	34685119	32	+	.	ID=2644;Type=deletion;Left=chr11:34684699-34685119;Right=chr11:34685194-34685612
chr11	CG	SV	34685194	34685612	32	+	.	ID=2644;Type=deletion;Left=chr11:34684699-34685119;Right=chr11:34685194-34685612
chr11	CG	SV	36734689	36735197	12	.	.	ID=2643;Type=deletion;Left=chr11:36734689-36735209+;Right=chr11:36734994-36735197+;Distance=305;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72128196 (chr11:36734377-36734689);Frequency=0.94
chr11	CG	SV	36734689	36735209	12	+	.	ID=2643;Type=deletion;Left=chr11:36734689-36735209;Right=chr11:36734994-36735197
chr11	CG	SV	36734994	36735197	12	+	.	ID=2643;Type=deletion;Left=chr11:36734689-36735209;Right=chr11:36734994-36735197
chr11	CG	SV	37918638	37919420	20	.	.	ID=2642;Type=deletion;Left=chr11:37918638-37919097+;Right=chr11:37918963-37919420+;Distance=325;DiscordantMatePairAlignments=20;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10705276 (chr11:37918621-37918946);Frequency=0.24
chr11	CG	SV	37918638	37919097	20	+	.	ID=2642;Type=deletion;Left=chr11:37918638-37919097;Right=chr11:37918963-37919420
chr11	CG	SV	37918963	37919420	20	+	.	ID=2642;Type=deletion;Left=chr11:37918638-37919097;Right=chr11:37918963-37919420
chr11	CG	SV	41118261	41124054	90	.	.	ID=273;Type=probable-inversion;Left=chr11:41118261-41118565-;Right=chr11:41123618-41124054+;Distance=5053;DiscordantMatePairAlignments=90;LeftRepeat=MER92B:LTR:ERV1;Self chain;RightRepeat=MER58A:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.25
chr11	CG	SV	41118261	41118565	90	-	.	ID=273;Type=probable-inversion;Left=chr11:41118261-41118565;Right=chr11:41123618-41124054
chr11	CG	SV	41123618	41124054	90	-	.	ID=273;Type=probable-inversion;Left=chr11:41118261-41118565;Right=chr11:41123618-41124054
chr11	CG	SV	42420682	42421381	21	.	.	ID=2639;Type=deletion;Left=chr11:42420682-42421084+;Right=chr11:42420993-42421381+;Distance=311;DiscordantMatePairAlignments=21;LeftRepeat=AluYb9:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6144323 (chr11:42420674-42420985);Frequency=0.94
chr11	CG	SV	42420682	42421084	21	+	.	ID=2639;Type=deletion;Left=chr11:42420682-42421084;Right=chr11:42420993-42421381
chr11	CG	SV	42420993	42421381	21	+	.	ID=2639;Type=deletion;Left=chr11:42420682-42421084;Right=chr11:42420993-42421381
chr11	CG	SV	43848419	43849117	39	.	.	ID=2637;Type=complex;Left=chr11:43848419-43848915+;Right=chr11:43848755-43849117+;Distance=336;DiscordantMatePairAlignments=39;LeftRepeat=MIR:SINE:MIR;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66477328 (chr11:43848405-43848741);Frequency=1.00
chr11	CG	SV	43848419	43848915	39	+	.	ID=2637;Type=complex;Left=chr11:43848419-43848915;Right=chr11:43848755-43849117
chr11	CG	SV	43848755	43849117	39	+	.	ID=2637;Type=complex;Left=chr11:43848419-43848915;Right=chr11:43848755-43849117
chr11	CG	SV	43848420	43849199	11	.	.	ID=2638;Type=complex;Left=chr11:43848420-43848638+;Right=chr11:43848756-43849199+;Distance=336;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs10525689 (chr11:43848420-43848756);Frequency=1.00
chr11	CG	SV	43848420	43848638	11	+	.	ID=2638;Type=complex;Left=chr11:43848420-43848638;Right=chr11:43848756-43849199
chr11	CG	SV	43848756	43849199	11	+	.	ID=2638;Type=complex;Left=chr11:43848420-43848638;Right=chr11:43848756-43849199
chr11	CG	SV	45386425	45388580	127	.	.	ID=2635;Type=deletion;Left=chr11:45386425-45386905+;Right=chr11:45388192-45388580+;Distance=1767;DiscordantMatePairAlignments=127;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66503754 (chr11:45386425-45388192);Frequency=0.94
chr11	CG	SV	45386425	45386905	127	+	.	ID=2635;Type=deletion;Left=chr11:45386425-45386905;Right=chr11:45388192-45388580
chr11	CG	SV	45388192	45388580	127	+	.	ID=2635;Type=deletion;Left=chr11:45386425-45386905;Right=chr11:45388192-45388580
chr11	CG	SV	47014164	47020696	32	.	.	ID=2634;Type=deletion;Left=chr11:47014164-47014486+;Right=chr11:47020282-47020696+;Distance=6118;DiscordantMatePairAlignments=32;LeftRepeat=(TA)n:Simple_repeat:Simple_repeat;Tandem AT;Tandem ATATA;Tandem period 7;RightRepeat=AluJo:SINE:Alu;LeftGenes=NM_001003676:+;NM_001003677:+;NM_001003678:+;NM_024113:+;RightGenes=NM_001003676:+;NM_001003677:+;NM_001003678:+;NM_024113:+;XRef=;Frequency=0.76
chr11	CG	SV	47014164	47014486	32	+	.	ID=2634;Type=deletion;Left=chr11:47014164-47014486;Right=chr11:47020282-47020696
chr11	CG	SV	47020282	47020696	32	+	.	ID=2634;Type=deletion;Left=chr11:47014164-47014486;Right=chr11:47020282-47020696
chr11	CG	SV	47844243	47845067	52	.	.	ID=2633;Type=deletion;Left=chr11:47844243-47844693+;Right=chr11:47844770-47845067+;Distance=527;DiscordantMatePairAlignments=52;LeftRepeat=AluSp:SINE:Alu;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr11	CG	SV	47844243	47844693	52	+	.	ID=2633;Type=deletion;Left=chr11:47844243-47844693;Right=chr11:47844770-47845067
chr11	CG	SV	47844770	47845067	52	+	.	ID=2633;Type=deletion;Left=chr11:47844243-47844693;Right=chr11:47844770-47845067
chr11	CG	SV	48076647	48077426	24	.	.	ID=2632;Type=deletion;Left=chr11:48076647-48077219+;Right=chr11:48076956-48077426+;Distance=309;DiscordantMatePairAlignments=24;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=;LeftGenes=NM_001098503:+;NM_002843:+;RightGenes=NM_001098503:+;NM_002843:+;XRef=rs72286428 (chr11:48076637-48076946);Frequency=0.94
chr11	CG	SV	48076647	48077219	24	+	.	ID=2632;Type=deletion;Left=chr11:48076647-48077219;Right=chr11:48076956-48077426
chr11	CG	SV	48076956	48077426	24	+	.	ID=2632;Type=deletion;Left=chr11:48076647-48077219;Right=chr11:48076956-48077426
chr11	CG	SV	48308216	48309104	17	.	.	ID=2631;Type=deletion;Left=chr11:48308216-48308573+;Right=chr11:48308717-48309104+;Distance=501;DiscordantMatePairAlignments=17;LeftRepeat=(TTTTA)n:Simple_repeat:Simple_repeat;Tandem TTATT;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	48308216	48308573	17	+	.	ID=2631;Type=deletion;Left=chr11:48308216-48308573;Right=chr11:48308717-48309104
chr11	CG	SV	48308717	48309104	17	+	.	ID=2631;Type=deletion;Left=chr11:48308216-48308573;Right=chr11:48308717-48309104
chr11	CG	SV	48311145	48311889	11	.	.	ID=2630;Type=deletion;Left=chr11:48311145-48311439+;Right=chr11:48311498-48311889+;Distance=353;DiscordantMatePairAlignments=11;LeftRepeat=L1PA4:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66619416 (chr11:48311143-48311496);Frequency=0.94
chr11	CG	SV	48311145	48311439	11	+	.	ID=2630;Type=deletion;Left=chr11:48311145-48311439;Right=chr11:48311498-48311889
chr11	CG	SV	48311498	48311889	11	+	.	ID=2630;Type=deletion;Left=chr11:48311145-48311439;Right=chr11:48311498-48311889
chr11	CG	SV	48324095	48330694	105	.	.	ID=2629;Type=deletion;Left=chr11:48324095-48324633+;Right=chr11:48330276-48330694+;Distance=6181;DiscordantMatePairAlignments=105;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001005513:-;RightGenes=NM_001005513:-;XRef=rs71787435 (chr11:48324104-48330285);Frequency=1.00
chr11	CG	SV	48324095	48324633	105	+	.	ID=2629;Type=deletion;Left=chr11:48324095-48324633;Right=chr11:48330276-48330694
chr11	CG	SV	48330276	48330694	105	+	.	ID=2629;Type=deletion;Left=chr11:48324095-48324633;Right=chr11:48330276-48330694
chr11	CG	SV	56164532	56165333	18	.	.	ID=2613;Type=deletion;Left=chr11:56164532-56164964+;Right=chr11:56164849-56165333+;Distance=317;DiscordantMatePairAlignments=18;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=LTR16A:LTR:ERVL;Self chain;LeftGenes=NM_001013356:+;RightGenes=NM_001013356:+;XRef=;Frequency=0.24
chr11	CG	SV	56164532	56164964	18	+	.	ID=2613;Type=deletion;Left=chr11:56164532-56164964;Right=chr11:56164849-56165333
chr11	CG	SV	56164849	56165333	18	+	.	ID=2613;Type=deletion;Left=chr11:56164532-56164964;Right=chr11:56164849-56165333
chr11	CG	SV	56196348	56197303	70	.	.	ID=2612;Type=deletion;Left=chr11:56196348-56196736+;Right=chr11:56196845-56197303+;Distance=497;DiscordantMatePairAlignments=70;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001013356:+;RightGenes=NM_001013356:+;XRef=;Frequency=0.24
chr11	CG	SV	56196348	56196736	70	+	.	ID=2612;Type=deletion;Left=chr11:56196348-56196736;Right=chr11:56196845-56197303
chr11	CG	SV	56196845	56197303	70	+	.	ID=2612;Type=deletion;Left=chr11:56196348-56196736;Right=chr11:56196845-56197303
chr11	CG	SV	57723924	78046672	57	.	.	ID=4460;Type=probable-inversion;Left=chr11:57723924-57724328+;Right=chr11:78046500-78046672-;Distance=20322748;DiscordantMatePairAlignments=57;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001098816:-;XRef=;Frequency=0.65
chr11	CG	SV	57723924	57724328	57	+	.	ID=4460;Type=probable-inversion;Left=chr11:57723924-57724328;Right=chr11:78046500-78046672
chr11	CG	SV	78046500	78046672	57	+	.	ID=4460;Type=probable-inversion;Left=chr11:57723924-57724328;Right=chr11:78046500-78046672
chr11	CG	SV	57923562	57925245	158	.	.	ID=2611;Type=deletion;Left=chr11:57923562-57923908+;Right=chr11:57924730-57925245+;Distance=1168;DiscordantMatePairAlignments=158;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72147631 (chr11:57923575-57924743);Frequency=0.71
chr11	CG	SV	57923562	57923908	158	+	.	ID=2611;Type=deletion;Left=chr11:57923562-57923908;Right=chr11:57924730-57925245
chr11	CG	SV	57924730	57925245	158	+	.	ID=2611;Type=deletion;Left=chr11:57923562-57923908;Right=chr11:57924730-57925245
chr11	CG	SV	58350764	58353057	16	.	.	ID=2610;Type=deletion;Left=chr11:58350764-58351116+;Right=chr11:58352595-58353057+;Distance=1831;DiscordantMatePairAlignments=16;LeftRepeat=MER4A1-int:LTR:ERV1;Self chain;RightRepeat=MER4A1:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr11	CG	SV	58350764	58351116	16	+	.	ID=2610;Type=deletion;Left=chr11:58350764-58351116;Right=chr11:58352595-58353057
chr11	CG	SV	58352595	58353057	16	+	.	ID=2610;Type=deletion;Left=chr11:58350764-58351116;Right=chr11:58352595-58353057
chr11	CG	SV	58388350	58393449	37	.	.	ID=2609;Type=deletion;Left=chr11:58388350-58388738+;Right=chr11:58393131-58393449+;Distance=4781;DiscordantMatePairAlignments=37;LeftRepeat=L1M2:LINE:L1;Self chain;RightRepeat=LOR1-int:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	58388350	58388738	37	+	.	ID=2609;Type=deletion;Left=chr11:58388350-58388738;Right=chr11:58393131-58393449
chr11	CG	SV	58393131	58393449	37	+	.	ID=2609;Type=deletion;Left=chr11:58388350-58388738;Right=chr11:58393131-58393449
chr11	CG	SV	60328185	60328969	83	.	.	ID=2607;Type=deletion;Left=chr11:60328185-60328677+;Right=chr11:60328672-60328969+;Distance=487;DiscordantMatePairAlignments=83;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr11	CG	SV	60328185	60328677	83	+	.	ID=2607;Type=deletion;Left=chr11:60328185-60328677;Right=chr11:60328672-60328969
chr11	CG	SV	60328672	60328969	83	+	.	ID=2607;Type=deletion;Left=chr11:60328185-60328677;Right=chr11:60328672-60328969
chr11	CG	SV	61801761	124964576	28	.	.	ID=270;Type=probable-inversion;Left=chr11:61801761-61801840-;Right=chr11:124964172-124964576+;Distance=63162332;DiscordantMatePairAlignments=28;LeftRepeat=PABL_A-int:LTR:ERV1;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr11	CG	SV	61801761	61801840	28	-	.	ID=270;Type=probable-inversion;Left=chr11:61801761-61801840;Right=chr11:124964172-124964576
chr11	CG	SV	124964172	124964576	28	-	.	ID=270;Type=probable-inversion;Left=chr11:61801761-61801840;Right=chr11:124964172-124964576
chr11	CG	SV	63455485	63458318	18	.	.	ID=2605;Type=deletion;Left=chr11:63455485-63455943+;Right=chr11:63458230-63458318+;Distance=2745;DiscordantMatePairAlignments=18;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs67483435 (chr11:63455485-63458230);Frequency=1.00
chr11	CG	SV	63455485	63455943	18	+	.	ID=2605;Type=deletion;Left=chr11:63455485-63455943;Right=chr11:63458230-63458318
chr11	CG	SV	63458230	63458318	18	+	.	ID=2605;Type=deletion;Left=chr11:63455485-63455943;Right=chr11:63458230-63458318
chr11	CG	SV	65775274	65776457	70	.	.	ID=4462;Type=complex;Left=chr11:65775274-65775614+;Right=chr11:65776024-65776457-;Distance=1183;DiscordantMatePairAlignments=70;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr11	CG	SV	65775274	65775614	70	+	.	ID=4462;Type=complex;Left=chr11:65775274-65775614;Right=chr11:65776024-65776457
chr11	CG	SV	65776024	65776457	70	+	.	ID=4462;Type=complex;Left=chr11:65775274-65775614;Right=chr11:65776024-65776457
chr11	CG	SV	65775077	65776845	15	.	.	ID=272;Type=complex;Left=chr11:65775077-65775568-;Right=chr11:65776578-65776845+;Distance=1010;DiscordantMatePairAlignments=15;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr11	CG	SV	65775077	65775568	15	-	.	ID=272;Type=complex;Left=chr11:65775077-65775568;Right=chr11:65776578-65776845
chr11	CG	SV	65776578	65776845	15	-	.	ID=272;Type=complex;Left=chr11:65775077-65775568;Right=chr11:65776578-65776845
chr11	CG	SV	67086873	67089301	14	.	.	ID=2603;Type=deletion;Left=chr11:67086873-67087334+;Right=chr11:67089129-67089301+;Distance=2256;DiscordantMatePairAlignments=14;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	67086873	67087334	14	+	.	ID=2603;Type=deletion;Left=chr11:67086873-67087334;Right=chr11:67089129-67089301
chr11	CG	SV	67089129	67089301	14	+	.	ID=2603;Type=deletion;Left=chr11:67086873-67087334;Right=chr11:67089129-67089301
chr11	CG	SV	68487936	68488190	26	.	.	ID=1052;Type=tandem-duplication;Left=chr11:68487936-68488030-;Right=chr11:68488058-68488190-;Distance=160;DiscordantMatePairAlignments=26;LeftRepeat=MLT1K:LTR:MaLR;Self chain;Tandem period 33;Tandem period 99;RightRepeat=Self chain;Tandem period 33;Tandem period 99;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	68487936	68488030	26	-	.	ID=1052;Type=tandem-duplication;Left=chr11:68487936-68488030;Right=chr11:68488058-68488190
chr11	CG	SV	68488058	68488190	26	-	.	ID=1052;Type=tandem-duplication;Left=chr11:68487936-68488030;Right=chr11:68488058-68488190
chr11	CG	SV	69110024	69110900	85	.	.	ID=2601;Type=deletion;Left=chr11:69110024-69110311+;Right=chr11:69110586-69110900+;Distance=562;DiscordantMatePairAlignments=85;LeftRepeat=Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72437253 (chr11:69110024-69110586);Frequency=1.00
chr11	CG	SV	69110024	69110311	85	+	.	ID=2601;Type=deletion;Left=chr11:69110024-69110311;Right=chr11:69110586-69110900
chr11	CG	SV	69110586	69110900	85	+	.	ID=2601;Type=deletion;Left=chr11:69110024-69110311;Right=chr11:69110586-69110900
chr11	CG	SV	69367695	69368310	25	.	.	ID=2599;Type=distal-duplication;Left=chr11:69367695-69368014+;Right=chr11:69367985-69368310+;Distance=290;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;RightRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	69367695	69368014	25	+	.	ID=2599;Type=distal-duplication;Left=chr11:69367695-69368014;Right=chr11:69367985-69368310
chr11	CG	SV	69367985	69368310	25	+	.	ID=2599;Type=distal-duplication;Left=chr11:69367695-69368014;Right=chr11:69367985-69368310
chr11	CG	SV	69367694	69368278	25	.	.	ID=1051;Type=distal-duplication;Left=chr11:69367694-69367876-;Right=chr11:69367981-69368278-;Distance=402;DiscordantMatePairAlignments=25;LeftRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GAT;RightRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	69367694	69367876	25	-	.	ID=1051;Type=distal-duplication;Left=chr11:69367694-69367876;Right=chr11:69367981-69368278
chr11	CG	SV	69367981	69368278	25	-	.	ID=1051;Type=distal-duplication;Left=chr11:69367694-69367876;Right=chr11:69367981-69368278
chr11	CG	SV	69660203	69662555	58	.	.	ID=2598;Type=deletion;Left=chr11:69660203-69660463+;Right=chr11:69662138-69662555+;Distance=1935;DiscordantMatePairAlignments=58;LeftRepeat=Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=NM_018043:+;NR_030691:+;RightGenes=NM_018043:+;NR_030691:+;XRef=;Frequency=0.06
chr11	CG	SV	69660203	69660463	58	+	.	ID=2598;Type=deletion;Left=chr11:69660203-69660463;Right=chr11:69662138-69662555
chr11	CG	SV	69662138	69662555	58	+	.	ID=2598;Type=deletion;Left=chr11:69660203-69660463;Right=chr11:69662138-69662555
chr11	CG	SV	70479159	70479328	33	.	.	ID=1049;Type=tandem-duplication;Left=chr11:70479159-70479245-;Right=chr11:70479250-70479328-;Distance=83;DiscordantMatePairAlignments=33;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GT;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TG;LeftGenes=NM_012309:-;RightGenes=NM_012309:-;XRef=;Frequency=0.94
chr11	CG	SV	70479159	70479245	33	-	.	ID=1049;Type=tandem-duplication;Left=chr11:70479159-70479245;Right=chr11:70479250-70479328
chr11	CG	SV	70479250	70479328	33	-	.	ID=1049;Type=tandem-duplication;Left=chr11:70479159-70479245;Right=chr11:70479250-70479328
chr11	CG	SV	73822719	73823442	10	.	.	ID=2597;Type=deletion;Left=chr11:73822719-73823149+;Right=chr11:73823066-73823442+;Distance=347;DiscordantMatePairAlignments=10;LeftRepeat=AluYb9:SINE:Alu;Self chain;RightRepeat=L1ME3B:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs66887925 (chr11:73822719-73823066);Frequency=0.76
chr11	CG	SV	73822719	73823149	10	+	.	ID=2597;Type=deletion;Left=chr11:73822719-73823149;Right=chr11:73823066-73823442
chr11	CG	SV	73823066	73823442	10	+	.	ID=2597;Type=deletion;Left=chr11:73822719-73823149;Right=chr11:73823066-73823442
chr11	CG	SV	81233831	81234590	14	.	.	ID=2594;Type=deletion;Left=chr11:81233831-81234298+;Right=chr11:81234198-81234590+;Distance=367;DiscordantMatePairAlignments=14;LeftRepeat=(TA)n:Simple_repeat:Simple_repeat;Self chain;Tandem AT;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6144414 (chr11:81233819-81234186);Frequency=0.53
chr11	CG	SV	81233831	81234298	14	+	.	ID=2594;Type=deletion;Left=chr11:81233831-81234298;Right=chr11:81234198-81234590
chr11	CG	SV	81234198	81234590	14	+	.	ID=2594;Type=deletion;Left=chr11:81233831-81234298;Right=chr11:81234198-81234590
chr11	CG	SV	81534058	81541386	34	.	.	ID=2593;Type=deletion;Left=chr11:81534058-81534439+;Right=chr11:81540993-81541386+;Distance=6935;DiscordantMatePairAlignments=34;LeftRepeat=L1MCb:LINE:L1;Self chain;RightRepeat=L1ME1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr11	CG	SV	81534058	81534439	34	+	.	ID=2593;Type=deletion;Left=chr11:81534058-81534439;Right=chr11:81540993-81541386
chr11	CG	SV	81540993	81541386	34	+	.	ID=2593;Type=deletion;Left=chr11:81534058-81534439;Right=chr11:81540993-81541386
chr11	CG	SV	85963609	85964848	97	.	.	ID=2592;Type=deletion;Left=chr11:85963609-85964117+;Right=chr11:85964370-85964848+;Distance=761;DiscordantMatePairAlignments=97;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001014811:-;NM_001161586:-;NM_006680:-;RightGenes=NM_001014811:-;NM_001161586:-;NM_006680:-;XRef=rs71790699 (chr11:85963609-85964370);Frequency=0.18
chr11	CG	SV	85963609	85964117	97	+	.	ID=2592;Type=deletion;Left=chr11:85963609-85964117;Right=chr11:85964370-85964848
chr11	CG	SV	85964370	85964848	97	+	.	ID=2592;Type=deletion;Left=chr11:85963609-85964117;Right=chr11:85964370-85964848
chr11	CG	SV	89572147	89572928	11	.	.	ID=2591;Type=deletion;Left=chr11:89572147-89572538+;Right=chr11:89572526-89572928+;Distance=379;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67049514 (chr11:89572161-89572500);Frequency=0.88
chr11	CG	SV	89572147	89572538	11	+	.	ID=2591;Type=deletion;Left=chr11:89572147-89572538;Right=chr11:89572526-89572928
chr11	CG	SV	89572526	89572928	11	+	.	ID=2591;Type=deletion;Left=chr11:89572147-89572538;Right=chr11:89572526-89572928
chr11	CG	SV	89833356	89836112	78	.	.	ID=2590;Type=deletion;Left=chr11:89833356-89833719+;Right=chr11:89835647-89836112+;Distance=2291;DiscordantMatePairAlignments=78;LeftRepeat=;RightRepeat=L1MB1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr11	CG	SV	89833356	89833719	78	+	.	ID=2590;Type=deletion;Left=chr11:89833356-89833719;Right=chr11:89835647-89836112
chr11	CG	SV	89835647	89836112	78	+	.	ID=2590;Type=deletion;Left=chr11:89833356-89833719;Right=chr11:89835647-89836112
chr11	CG	SV	92742463	92743263	15	.	.	ID=2586;Type=deletion;Left=chr11:92742463-92742935+;Right=chr11:92742781-92743263+;Distance=318;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_181645:+;RightGenes=NM_181645:+;XRef=rs67552685 (chr11:92742463-92742781);Frequency=0.76
chr11	CG	SV	92742463	92742935	15	+	.	ID=2586;Type=deletion;Left=chr11:92742463-92742935;Right=chr11:92742781-92743263
chr11	CG	SV	92742781	92743263	15	+	.	ID=2586;Type=deletion;Left=chr11:92742463-92742935;Right=chr11:92742781-92743263
chr11	CG	SV	96119983	96120756	17	.	.	ID=2585;Type=deletion;Left=chr11:96119983-96120432+;Right=chr11:96120310-96120756+;Distance=327;DiscordantMatePairAlignments=17;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66470340 (chr11:96119969-96120296);Frequency=0.88
chr11	CG	SV	96119983	96120432	17	+	.	ID=2585;Type=deletion;Left=chr11:96119983-96120432;Right=chr11:96120310-96120756
chr11	CG	SV	96120310	96120756	17	+	.	ID=2585;Type=deletion;Left=chr11:96119983-96120432;Right=chr11:96120310-96120756
chr11	CG	SV	97753418	97754260	74	.	.	ID=2584;Type=deletion;Left=chr11:97753418-97753851+;Right=chr11:97753812-97754260+;Distance=394;DiscordantMatePairAlignments=74;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67075251 (chr11:97753418-97753812);Frequency=0.59
chr11	CG	SV	97753418	97753851	74	+	.	ID=2584;Type=deletion;Left=chr11:97753418-97753851;Right=chr11:97753812-97754260
chr11	CG	SV	97753812	97754260	74	+	.	ID=2584;Type=deletion;Left=chr11:97753418-97753851;Right=chr11:97753812-97754260
chr11	CG	SV	99195693	99196517	98	.	.	ID=4458;Type=probable-inversion;Left=chr11:99195693-99196066+;Right=chr11:99196152-99196517-;Distance=824;DiscordantMatePairAlignments=98;LeftRepeat=;RightRepeat=;LeftGenes=NM_014361:+;NM_175566:+;RightGenes=NM_014361:+;NM_175566:+;XRef=;Frequency=1.00
chr11	CG	SV	99195693	99196066	98	+	.	ID=4458;Type=probable-inversion;Left=chr11:99195693-99196066;Right=chr11:99196152-99196517
chr11	CG	SV	99196152	99196517	98	+	.	ID=4458;Type=probable-inversion;Left=chr11:99195693-99196066;Right=chr11:99196152-99196517
chr11	CG	SV	101977068	101977827	13	.	.	ID=2581;Type=deletion;Left=chr11:101977068-101977490+;Right=chr11:101977384-101977827+;Distance=316;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_004771:-;RightGenes=NM_004771:-;XRef=;Frequency=0.88
chr11	CG	SV	101977068	101977490	13	+	.	ID=2581;Type=deletion;Left=chr11:101977068-101977490;Right=chr11:101977384-101977827
chr11	CG	SV	101977384	101977827	13	+	.	ID=2581;Type=deletion;Left=chr11:101977068-101977490;Right=chr11:101977384-101977827
chr11	CG	SV	102916041	102916838	23	.	.	ID=2580;Type=deletion;Left=chr11:102916041-102916417+;Right=chr11:102916354-102916838+;Distance=313;DiscordantMatePairAlignments=23;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6144489 (chr11:102916041-102916354);Frequency=1.00
chr11	CG	SV	102916041	102916417	23	+	.	ID=2580;Type=deletion;Left=chr11:102916041-102916417;Right=chr11:102916354-102916838
chr11	CG	SV	102916354	102916838	23	+	.	ID=2580;Type=deletion;Left=chr11:102916041-102916417;Right=chr11:102916354-102916838
chr11	CG	SV	103515693	103516440	43	.	.	ID=2579;Type=deletion;Left=chr11:103515693-103516130+;Right=chr11:103516037-103516440+;Distance=344;DiscordantMatePairAlignments=43;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_025208:-;NM_033135:-;RightGenes=NM_025208:-;NM_033135:-;XRef=rs10527562 (chr11:103515693-103516037);Frequency=0.88
chr11	CG	SV	103515693	103516130	43	+	.	ID=2579;Type=deletion;Left=chr11:103515693-103516130;Right=chr11:103516037-103516440
chr11	CG	SV	103516037	103516440	43	+	.	ID=2579;Type=deletion;Left=chr11:103515693-103516130;Right=chr11:103516037-103516440
chr11	CG	SV	103685604	103686287	16	.	.	ID=2578;Type=deletion;Left=chr11:103685604-103686034+;Right=chr11:103685947-103686287+;Distance=343;DiscordantMatePairAlignments=16;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L1MC:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71019863 (chr11:103685604-103685947);Frequency=1.00
chr11	CG	SV	103685604	103686034	16	+	.	ID=2578;Type=deletion;Left=chr11:103685604-103686034;Right=chr11:103685947-103686287
chr11	CG	SV	103685947	103686287	16	+	.	ID=2578;Type=deletion;Left=chr11:103685604-103686034;Right=chr11:103685947-103686287
chr11	CG	SV	103772959	103778861	143	.	.	ID=2577;Type=deletion;Left=chr11:103772959-103773460+;Right=chr11:103778440-103778861+;Distance=5481;DiscordantMatePairAlignments=143;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67498645 (chr11:103772958-103778439);Frequency=0.88
chr11	CG	SV	103772959	103773460	143	+	.	ID=2577;Type=deletion;Left=chr11:103772959-103773460;Right=chr11:103778440-103778861
chr11	CG	SV	103778440	103778861	143	+	.	ID=2577;Type=deletion;Left=chr11:103772959-103773460;Right=chr11:103778440-103778861
chr11	CG	SV	104900077	104900463	11	.	.	ID=1047;Type=tandem-duplication;Left=chr11:104900077-104900268-;Right=chr11:104900271-104900463-;Distance=195;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr11	CG	SV	104900077	104900268	11	-	.	ID=1047;Type=tandem-duplication;Left=chr11:104900077-104900268;Right=chr11:104900271-104900463
chr11	CG	SV	104900271	104900463	11	-	.	ID=1047;Type=tandem-duplication;Left=chr11:104900077-104900268;Right=chr11:104900271-104900463
chr11	CG	SV	105270731	105271479	13	.	.	ID=2576;Type=deletion;Left=chr11:105270731-105271244+;Right=chr11:105271050-105271479+;Distance=319;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_000829:+;NM_001077243:+;NM_001077244:+;NM_001112812:+;RightGenes=NM_000829:+;NM_001077243:+;NM_001077244:+;NM_001112812:+;XRef=rs10522523 (chr11:105270731-105271050);Frequency=0.18
chr11	CG	SV	105270731	105271244	13	+	.	ID=2576;Type=deletion;Left=chr11:105270731-105271244;Right=chr11:105271050-105271479
chr11	CG	SV	105271050	105271479	13	+	.	ID=2576;Type=deletion;Left=chr11:105270731-105271244;Right=chr11:105271050-105271479
chr11	CG	SV	113930121	113937554	159	.	.	ID=2574;Type=deletion;Left=chr11:113930121-113930554+;Right=chr11:113937135-113937554+;Distance=7014;DiscordantMatePairAlignments=159;LeftRepeat=MLT1J:LTR:MaLR;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_152315:-;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	113930121	113930554	159	+	.	ID=2574;Type=deletion;Left=chr11:113930121-113930554;Right=chr11:113937135-113937554
chr11	CG	SV	113937135	113937554	159	+	.	ID=2574;Type=deletion;Left=chr11:113930121-113930554;Right=chr11:113937135-113937554
chr11	CG	SV	113938523	130736056	176	.	.	ID=2571;Type=deletion;Left=chr11:113938523-113939034+;Right=chr11:130735676-130736056+;Distance=16797153;DiscordantMatePairAlignments=176;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	113938523	113939034	176	+	.	ID=2571;Type=deletion;Left=chr11:113938523-113939034;Right=chr11:130735676-130736056
chr11	CG	SV	130735676	130736056	176	+	.	ID=2571;Type=deletion;Left=chr11:113938523-113939034;Right=chr11:130735676-130736056
chr11	CG	SV	117797732	117799079	10	.	.	ID=1046;Type=tandem-duplication;Left=chr11:117797732-117797862-;Right=chr11:117798883-117799079-;Distance=1217;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr11	CG	SV	117797732	117797862	10	-	.	ID=1046;Type=tandem-duplication;Left=chr11:117797732-117797862;Right=chr11:117798883-117799079
chr11	CG	SV	117798883	117799079	10	-	.	ID=1046;Type=tandem-duplication;Left=chr11:117797732-117797862;Right=chr11:117798883-117799079
chr11	CG	SV	121852806	121854935	177	.	.	ID=2572;Type=deletion;Left=chr11:121852806-121853221+;Right=chr11:121854510-121854935+;Distance=1704;DiscordantMatePairAlignments=177;LeftRepeat=L1HS:LINE:L1;RightRepeat=GA-rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	121852806	121853221	177	+	.	ID=2572;Type=deletion;Left=chr11:121852806-121853221;Right=chr11:121854510-121854935
chr11	CG	SV	121854510	121854935	177	+	.	ID=2572;Type=deletion;Left=chr11:121852806-121853221;Right=chr11:121854510-121854935
chr11	CG	SV	126007804	126007877	20	.	.	ID=4457;Type=probable-inversion;Left=chr11:126007804-126008181+;Right=chr11:126007788-126007877-;Distance=73;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=;LeftGenes=NM_001161707:-;NM_032531:-;RightGenes=NM_001161707:-;NM_032531:-;XRef=;Frequency=1.00
chr11	CG	SV	126007804	126008181	20	+	.	ID=4457;Type=probable-inversion;Left=chr11:126007804-126008181;Right=chr11:126007788-126007877
chr11	CG	SV	126007788	126007877	20	+	.	ID=4457;Type=probable-inversion;Left=chr11:126007804-126008181;Right=chr11:126007788-126007877
chr11	CG	SV	128187926	128189103	54	.	.	ID=2570;Type=deletion;Left=chr11:128187926-128188319+;Right=chr11:128188620-128189103+;Distance=694;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=;LeftGenes=NM_001167681:+;NM_002017:+;RightGenes=;XRef=rs71759766 (chr11:128187927-128188620);Frequency=0.65
chr11	CG	SV	128187926	128188319	54	+	.	ID=2570;Type=deletion;Left=chr11:128187926-128188319;Right=chr11:128188620-128189103
chr11	CG	SV	128188620	128189103	54	+	.	ID=2570;Type=deletion;Left=chr11:128187926-128188319;Right=chr11:128188620-128189103
chr11	CG	SV	128518725	128520868	97	.	.	ID=2569;Type=deletion;Left=chr11:128518725-128519082+;Right=chr11:128520492-128520868+;Distance=1767;DiscordantMatePairAlignments=97;LeftRepeat=MER44C:DNA:MER2_type;RightRepeat=;LeftGenes=NM_001142685:-;RightGenes=NM_001142685:-;XRef=;Frequency=0.29
chr11	CG	SV	128518725	128519082	97	+	.	ID=2569;Type=deletion;Left=chr11:128518725-128519082;Right=chr11:128520492-128520868
chr11	CG	SV	128520492	128520868	97	+	.	ID=2569;Type=deletion;Left=chr11:128518725-128519082;Right=chr11:128520492-128520868
chr11	CG	SV	129730891	129735926	21	.	.	ID=2568;Type=deletion;Left=chr11:129730891-129731312+;Right=chr11:129735616-129735926+;Distance=4725;DiscordantMatePairAlignments=21;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	129730891	129731312	21	+	.	ID=2568;Type=deletion;Left=chr11:129730891-129731312;Right=chr11:129735616-129735926
chr11	CG	SV	129735616	129735926	21	+	.	ID=2568;Type=deletion;Left=chr11:129730891-129731312;Right=chr11:129735616-129735926
chr11	CG	SV	131588836	131589597	27	.	.	ID=2567;Type=deletion;Left=chr11:131588836-131589355+;Right=chr11:131589150-131589597+;Distance=314;DiscordantMatePairAlignments=27;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001048209:+;NM_001144058:+;NM_001144059:+;NM_016522:+;RightGenes=NM_001048209:+;NM_001144058:+;NM_001144059:+;NM_016522:+;XRef=;Frequency=0.65
chr11	CG	SV	131588836	131589355	27	+	.	ID=2567;Type=deletion;Left=chr11:131588836-131589355;Right=chr11:131589150-131589597
chr11	CG	SV	131589150	131589597	27	+	.	ID=2567;Type=deletion;Left=chr11:131588836-131589355;Right=chr11:131589150-131589597
chr11	CG	SV	134110389	134111499	55	.	.	ID=2565;Type=deletion;Left=chr11:134110389-134110851+;Right=chr11:134111073-134111499+;Distance=684;DiscordantMatePairAlignments=55;LeftRepeat=Self chain;Tandem period 36;RightRepeat=Self chain;Tandem period 36;LeftGenes=;RightGenes=;XRef=rs67758116 (chr11:134110307-134110991);Frequency=0.29
chr11	CG	SV	134110389	134110851	55	+	.	ID=2565;Type=deletion;Left=chr11:134110389-134110851;Right=chr11:134111073-134111499
chr11	CG	SV	134111073	134111499	55	+	.	ID=2565;Type=deletion;Left=chr11:134110389-134110851;Right=chr11:134111073-134111499
chr12	CG	SV	737066	745455	47	.	.	ID=2564;Type=deletion;Left=chr12:737066-737520+;Right=chr12:745049-745455+;Distance=7983;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=;LeftGenes=NM_018979:+;RightGenes=NM_018979:+;XRef=rs71967863 (chr12:737061-745044);Frequency=0.29
chr12	CG	SV	737066	737520	47	+	.	ID=2564;Type=deletion;Left=chr12:737066-737520;Right=chr12:745049-745455
chr12	CG	SV	745049	745455	47	+	.	ID=2564;Type=deletion;Left=chr12:737066-737520;Right=chr12:745049-745455
chr12	CG	SV	899182	900217	18	.	.	ID=2563;Type=deletion;Left=chr12:899182-899577+;Right=chr12:899991-900217+;Distance=809;DiscordantMatePairAlignments=18;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_134424:-;RightGenes=NM_134424:-;XRef=;Frequency=0.82
chr12	CG	SV	899182	899577	18	+	.	ID=2563;Type=deletion;Left=chr12:899182-899577;Right=chr12:899991-900217
chr12	CG	SV	899991	900217	18	+	.	ID=2563;Type=deletion;Left=chr12:899182-899577;Right=chr12:899991-900217
chr12	CG	SV	1734137	1734992	12	.	.	ID=2562;Type=deletion;Left=chr12:1734137-1734458+;Right=chr12:1734587-1734992+;Distance=450;DiscordantMatePairAlignments=12;LeftRepeat=(CTA)n:Simple_repeat:Simple_repeat;Tandem TAC;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_024551:+;RightGenes=NM_024551:+;XRef=rs35417183 (chr12:1734272-1734587);Frequency=0.88
chr12	CG	SV	1734137	1734458	12	+	.	ID=2562;Type=deletion;Left=chr12:1734137-1734458;Right=chr12:1734587-1734992
chr12	CG	SV	1734587	1734992	12	+	.	ID=2562;Type=deletion;Left=chr12:1734137-1734458;Right=chr12:1734587-1734992
chr12	CG	SV	4952569	4953631	71	.	.	ID=2560;Type=deletion;Left=chr12:4952569-4952963+;Right=chr12:4953430-4953631+;Distance=861;DiscordantMatePairAlignments=71;LeftRepeat=Self chain;Tandem period 41;RightRepeat=Self chain;Tandem period 41;LeftGenes=;RightGenes=;XRef=rs71064124 (chr12:4952495-4953234);Frequency=1.00
chr12	CG	SV	4952569	4952963	71	+	.	ID=2560;Type=deletion;Left=chr12:4952569-4952963;Right=chr12:4953430-4953631
chr12	CG	SV	4953430	4953631	71	+	.	ID=2560;Type=deletion;Left=chr12:4952569-4952963;Right=chr12:4953430-4953631
chr12	CG	SV	8908347	8909671	41	.	.	ID=2557;Type=deletion;Left=chr12:8908347-8908756+;Right=chr12:8909373-8909671+;Distance=1026;DiscordantMatePairAlignments=41;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=NM_144670:+;RightGenes=NM_144670:+;XRef=rs71042150 (chr12:8908119-8909146);Frequency=1.00
chr12	CG	SV	8908347	8908756	41	+	.	ID=2557;Type=deletion;Left=chr12:8908347-8908756;Right=chr12:8909373-8909671
chr12	CG	SV	8909373	8909671	41	+	.	ID=2557;Type=deletion;Left=chr12:8908347-8908756;Right=chr12:8909373-8909671
chr12	CG	SV	11083714	11109672	47	.	.	ID=2556;Type=deletion;Left=chr12:11083714-11084166+;Right=chr12:11109331-11109672+;Distance=25617;DiscordantMatePairAlignments=47;LeftRepeat=SegDup;Self chain;RightRepeat=L1MEe:LINE:L1;Self chain;LeftGenes=NM_001098538:-;NM_006250:-;RightGenes=NM_001098538:-;NM_006250:-;XRef=;Frequency=0.59
chr12	CG	SV	11083714	11084166	47	+	.	ID=2556;Type=deletion;Left=chr12:11083714-11084166;Right=chr12:11109331-11109672
chr12	CG	SV	11109331	11109672	47	+	.	ID=2556;Type=deletion;Left=chr12:11083714-11084166;Right=chr12:11109331-11109672
chr12	CG	SV	12435704	12438184	49	.	.	ID=269;Type=distal-duplication;Left=chr12:12435704-12436120-;Right=chr12:12437888-12438184+;Distance=1768;DiscordantMatePairAlignments=49;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_058169:+;RightGenes=NM_058169:+;XRef=;Frequency=1.00
chr12	CG	SV	12435704	12436120	49	-	.	ID=269;Type=distal-duplication;Left=chr12:12435704-12436120;Right=chr12:12437888-12438184
chr12	CG	SV	12437888	12438184	49	-	.	ID=269;Type=distal-duplication;Left=chr12:12435704-12436120;Right=chr12:12437888-12438184
chr12	CG	SV	12436200	12437784	25	.	.	ID=4453;Type=distal-duplication;Left=chr12:12436200-12436532+;Right=chr12:12437538-12437784-;Distance=1584;DiscordantMatePairAlignments=25;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_058169:+;RightGenes=NM_058169:+;XRef=;Frequency=1.00
chr12	CG	SV	12436200	12436532	25	+	.	ID=4453;Type=distal-duplication;Left=chr12:12436200-12436532;Right=chr12:12437538-12437784
chr12	CG	SV	12437538	12437784	25	+	.	ID=4453;Type=distal-duplication;Left=chr12:12436200-12436532;Right=chr12:12437538-12437784
chr12	CG	SV	13055244	13056119	47	.	.	ID=1043;Type=tandem-duplication;Left=chr12:13055244-13055636-;Right=chr12:13055816-13056119-;Distance=483;DiscordantMatePairAlignments=47;LeftRepeat=MIR:SINE:MIR;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr12	CG	SV	13055244	13055636	47	-	.	ID=1043;Type=tandem-duplication;Left=chr12:13055244-13055636;Right=chr12:13055816-13056119
chr12	CG	SV	13055816	13056119	47	-	.	ID=1043;Type=tandem-duplication;Left=chr12:13055244-13055636;Right=chr12:13055816-13056119
chr12	CG	SV	16311390	16313005	113	.	.	ID=2553;Type=deletion;Left=chr12:16311390-16311803+;Right=chr12:16312550-16313005+;Distance=1160;DiscordantMatePairAlignments=113;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66519654 (chr12:16311391-16312550);Frequency=0.59
chr12	CG	SV	16311390	16311803	113	+	.	ID=2553;Type=deletion;Left=chr12:16311390-16311803;Right=chr12:16312550-16313005
chr12	CG	SV	16312550	16313005	113	+	.	ID=2553;Type=deletion;Left=chr12:16311390-16311803;Right=chr12:16312550-16313005
chr12	CG	SV	17336092	17337472	41	.	.	ID=2552;Type=deletion;Left=chr12:17336092-17336558+;Right=chr12:17337202-17337472+;Distance=1110;DiscordantMatePairAlignments=41;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67412039 (chr12:17336092-17337204);Frequency=0.94
chr12	CG	SV	17336092	17336558	41	+	.	ID=2552;Type=deletion;Left=chr12:17336092-17336558;Right=chr12:17337202-17337472
chr12	CG	SV	17337202	17337472	41	+	.	ID=2552;Type=deletion;Left=chr12:17336092-17336558;Right=chr12:17337202-17337472
chr12	CG	SV	17498622	17499521	47	.	.	ID=2551;Type=deletion;Left=chr12:17498622-17499058+;Right=chr12:17499126-17499521+;Distance=504;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr12	CG	SV	17498622	17499058	47	+	.	ID=2551;Type=deletion;Left=chr12:17498622-17499058;Right=chr12:17499126-17499521
chr12	CG	SV	17499126	17499521	47	+	.	ID=2551;Type=deletion;Left=chr12:17498622-17499058;Right=chr12:17499126-17499521
chr12	CG	SV	20753801	20754393	11	.	.	ID=2548;Type=deletion;Left=chr12:20753801-20754221+;Right=chr12:20754139-20754393+;Distance=338;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001145944:+;NM_001145945:+;NM_001145946:+;NM_017435:+;RightGenes=NM_001145944:+;NM_001145945:+;NM_001145946:+;NM_017435:+;XRef=rs67537582 (chr12:20753786-20754124);Frequency=0.88
chr12	CG	SV	20753801	20754221	11	+	.	ID=2548;Type=deletion;Left=chr12:20753801-20754221;Right=chr12:20754139-20754393
chr12	CG	SV	20754139	20754393	11	+	.	ID=2548;Type=deletion;Left=chr12:20753801-20754221;Right=chr12:20754139-20754393
chr12	CG	SV	23830789	23831750	39	.	.	ID=2546;Type=deletion;Left=chr12:23830789-23831216+;Right=chr12:23831356-23831750+;Distance=567;DiscordantMatePairAlignments=39;LeftRepeat=;RightRepeat=;LeftGenes=NM_006940:-;NM_152989:-;RightGenes=NM_006940:-;NM_152989:-;XRef=;Frequency=0.59
chr12	CG	SV	23830789	23831216	39	+	.	ID=2546;Type=deletion;Left=chr12:23830789-23831216;Right=chr12:23831356-23831750
chr12	CG	SV	23831356	23831750	39	+	.	ID=2546;Type=deletion;Left=chr12:23830789-23831216;Right=chr12:23831356-23831750
chr12	CG	SV	24832196	24833388	224	.	.	ID=2542;Type=deletion;Left=chr12:24832196-24832645+;Right=chr12:24832898-24833388+;Distance=702;DiscordantMatePairAlignments=224;LeftRepeat=LTR16A:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr12	CG	SV	24832196	24832645	224	+	.	ID=2542;Type=deletion;Left=chr12:24832196-24832645;Right=chr12:24832898-24833388
chr12	CG	SV	24832898	24833388	224	+	.	ID=2542;Type=deletion;Left=chr12:24832196-24832645;Right=chr12:24832898-24833388
chr12	CG	SV	25847094	124367341	32	.	.	ID=264;Type=complex;Left=chr12:25847094-25847393-;Right=chr12:124367100-124367341+;Distance=98519707;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	25847094	25847393	32	-	.	ID=264;Type=complex;Left=chr12:25847094-25847393;Right=chr12:124367100-124367341
chr12	CG	SV	124367100	124367341	32	-	.	ID=264;Type=complex;Left=chr12:25847094-25847393;Right=chr12:124367100-124367341
chr12	CG	SV	25846856	102883842	10	.	.	ID=1033;Type=complex;Left=chr12:25846856-25847395-;Right=chr12:102883760-102883842-;Distance=77036447;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_003211:+;XRef=;Frequency=0.53
chr12	CG	SV	25846856	25847395	10	-	.	ID=1033;Type=complex;Left=chr12:25846856-25847395;Right=chr12:102883760-102883842
chr12	CG	SV	102883760	102883842	10	-	.	ID=1033;Type=complex;Left=chr12:25846856-25847395;Right=chr12:102883760-102883842
chr12	CG	SV	26402303	26402751	17	.	.	ID=2540;Type=complex;Left=chr12:26402303-26402839+;Right=chr12:26402635-26402751+;Distance=332;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=;LeftGenes=NM_002223:-;RightGenes=NM_002223:-;XRef=;Frequency=1.00
chr12	CG	SV	26402303	26402839	17	+	.	ID=2540;Type=complex;Left=chr12:26402303-26402839;Right=chr12:26402635-26402751
chr12	CG	SV	26402635	26402751	17	+	.	ID=2540;Type=complex;Left=chr12:26402303-26402839;Right=chr12:26402635-26402751
chr12	CG	SV	26402304	26403070	38	.	.	ID=2541;Type=complex;Left=chr12:26402304-26402760+;Right=chr12:26402636-26403070+;Distance=332;DiscordantMatePairAlignments=38;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_002223:-;RightGenes=NM_002223:-;XRef=rs68179015 (chr12:26402304-26402636);Frequency=1.00
chr12	CG	SV	26402304	26402760	38	+	.	ID=2541;Type=complex;Left=chr12:26402304-26402760;Right=chr12:26402636-26403070
chr12	CG	SV	26402636	26403070	38	+	.	ID=2541;Type=complex;Left=chr12:26402304-26402760;Right=chr12:26402636-26403070
chr12	CG	SV	27325270	27325976	37	.	.	ID=2539;Type=deletion;Left=chr12:27325270-27325743+;Right=chr12:27325601-27325976+;Distance=331;DiscordantMatePairAlignments=37;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_015000:+;RightGenes=NM_015000:+;XRef=rs72425621 (chr12:27325254-27325585);Frequency=0.88
chr12	CG	SV	27325270	27325743	37	+	.	ID=2539;Type=deletion;Left=chr12:27325270-27325743;Right=chr12:27325601-27325976
chr12	CG	SV	27325601	27325976	37	+	.	ID=2539;Type=deletion;Left=chr12:27325270-27325743;Right=chr12:27325601-27325976
chr12	CG	SV	29052943	29056406	27	.	.	ID=2538;Type=deletion;Left=chr12:29052943-29053288+;Right=chr12:29056104-29056406+;Distance=3161;DiscordantMatePairAlignments=27;LeftRepeat=MLT1B:LTR:MaLR;RightRepeat=MER93B:LTR:ERV1;Tandem period 31;LeftGenes=;RightGenes=;XRef=rs66659443 (chr12:29052943-29056085);Frequency=0.15
chr12	CG	SV	29052943	29053288	27	+	.	ID=2538;Type=deletion;Left=chr12:29052943-29053288;Right=chr12:29056104-29056406
chr12	CG	SV	29056104	29056406	27	+	.	ID=2538;Type=deletion;Left=chr12:29052943-29053288;Right=chr12:29056104-29056406
chr12	CG	SV	29464687	29465499	31	.	.	ID=2536;Type=deletion;Left=chr12:29464687-29465150+;Right=chr12:29465028-29465499+;Distance=341;DiscordantMatePairAlignments=31;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67361605 (chr12:29464687-29465028);Frequency=0.94
chr12	CG	SV	29464687	29465150	31	+	.	ID=2536;Type=deletion;Left=chr12:29464687-29465150;Right=chr12:29465028-29465499
chr12	CG	SV	29465028	29465499	31	+	.	ID=2536;Type=deletion;Left=chr12:29464687-29465150;Right=chr12:29465028-29465499
chr12	CG	SV	30262584	30263352	38	.	.	ID=2535;Type=deletion;Left=chr12:30262584-30262970+;Right=chr12:30263009-30263352+;Distance=425;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=Self chain;Tigger3b:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr12	CG	SV	30262584	30262970	38	+	.	ID=2535;Type=deletion;Left=chr12:30262584-30262970;Right=chr12:30263009-30263352
chr12	CG	SV	30263009	30263352	38	+	.	ID=2535;Type=deletion;Left=chr12:30262584-30262970;Right=chr12:30263009-30263352
chr12	CG	SV	30369554	30372541	37	.	.	ID=2534;Type=deletion;Left=chr12:30369554-30370086+;Right=chr12:30372260-30372541+;Distance=2706;DiscordantMatePairAlignments=37;LeftRepeat=LTR41:LTR:ERVL;Self chain;RightRepeat=MER52C:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs66727704 (chr12:30369554-30372260);Frequency=0.41
chr12	CG	SV	30369554	30370086	37	+	.	ID=2534;Type=deletion;Left=chr12:30369554-30370086;Right=chr12:30372260-30372541
chr12	CG	SV	30372260	30372541	37	+	.	ID=2534;Type=deletion;Left=chr12:30369554-30370086;Right=chr12:30372260-30372541
chr12	CG	SV	39946098	39946817	13	.	.	ID=2522;Type=deletion;Left=chr12:39946098-39946540+;Right=chr12:39946415-39946817+;Distance=317;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001164595:+;RightGenes=NM_001164595:+;XRef=rs6144690 (chr12:39946083-39946400);Frequency=0.94
chr12	CG	SV	39946098	39946540	13	+	.	ID=2522;Type=deletion;Left=chr12:39946098-39946540;Right=chr12:39946415-39946817
chr12	CG	SV	39946415	39946817	13	+	.	ID=2522;Type=deletion;Left=chr12:39946098-39946540;Right=chr12:39946415-39946817
chr12	CG	SV	40524330	40525487	45	.	.	ID=2521;Type=deletion;Left=chr12:40524330-40524776+;Right=chr12:40525154-40525487+;Distance=824;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66498842 (chr12:40524320-40525144);Frequency=0.88
chr12	CG	SV	40524330	40524776	45	+	.	ID=2521;Type=deletion;Left=chr12:40524330-40524776;Right=chr12:40525154-40525487
chr12	CG	SV	40525154	40525487	45	+	.	ID=2521;Type=deletion;Left=chr12:40524330-40524776;Right=chr12:40525154-40525487
chr12	CG	SV	42263722	42266266	212	.	.	ID=2519;Type=deletion;Left=chr12:42263722-42264152+;Right=chr12:42265822-42266266+;Distance=2100;DiscordantMatePairAlignments=212;LeftRepeat=LTR52:LTR:ERVL;RightRepeat=LTR52:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs67022104 (chr12:42263727-42265827);Frequency=1.00
chr12	CG	SV	42263722	42264152	212	+	.	ID=2519;Type=deletion;Left=chr12:42263722-42264152;Right=chr12:42265822-42266266
chr12	CG	SV	42265822	42266266	212	+	.	ID=2519;Type=deletion;Left=chr12:42263722-42264152;Right=chr12:42265822-42266266
chr12	CG	SV	44189420	44196591	153	.	.	ID=2518;Type=deletion;Left=chr12:44189420-44189866+;Right=chr12:44196206-44196591+;Distance=6786;DiscordantMatePairAlignments=153;LeftRepeat=MSTD-int:LTR:MaLR;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72102706 (chr12:44189420-44196206);Frequency=0.76
chr12	CG	SV	44189420	44189866	153	+	.	ID=2518;Type=deletion;Left=chr12:44189420-44189866;Right=chr12:44196206-44196591
chr12	CG	SV	44196206	44196591	153	+	.	ID=2518;Type=deletion;Left=chr12:44189420-44189866;Right=chr12:44196206-44196591
chr12	CG	SV	45361633	45362495	36	.	.	ID=2517;Type=deletion;Left=chr12:45361633-45362056+;Right=chr12:45361981-45362495+;Distance=348;DiscordantMatePairAlignments=36;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6144704 (chr12:45361633-45361981);Frequency=1.00
chr12	CG	SV	45361633	45362056	36	+	.	ID=2517;Type=deletion;Left=chr12:45361633-45362056;Right=chr12:45361981-45362495
chr12	CG	SV	45361981	45362495	36	+	.	ID=2517;Type=deletion;Left=chr12:45361633-45362056;Right=chr12:45361981-45362495
chr12	CG	SV	48468878	48469224	13	.	.	ID=4445;Type=probable-inversion;Left=chr12:48468878-48469130+;Right=chr12:48468909-48469224-;Distance=346;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr12	CG	SV	48468878	48469130	13	+	.	ID=4445;Type=probable-inversion;Left=chr12:48468878-48469130;Right=chr12:48468909-48469224
chr12	CG	SV	48468909	48469224	13	+	.	ID=4445;Type=probable-inversion;Left=chr12:48468878-48469130;Right=chr12:48468909-48469224
chr12	CG	SV	51882260	51883074	11	.	.	ID=2516;Type=deletion;Left=chr12:51882260-51882545+;Right=chr12:51882862-51883074+;Distance=602;DiscordantMatePairAlignments=11;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_000889:-;RightGenes=NM_000889:-;XRef=;Frequency=0.00
chr12	CG	SV	51882260	51882545	11	+	.	ID=2516;Type=deletion;Left=chr12:51882260-51882545;Right=chr12:51882862-51883074
chr12	CG	SV	51882862	51883074	11	+	.	ID=2516;Type=deletion;Left=chr12:51882260-51882545;Right=chr12:51882862-51883074
chr12	CG	SV	58808108	58811664	61	.	.	ID=2512;Type=deletion;Left=chr12:58808108-58808423+;Right=chr12:58811304-58811664+;Distance=3196;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71042189 (chr12:58808112-58811308);Frequency=0.59
chr12	CG	SV	58808108	58808423	61	+	.	ID=2512;Type=deletion;Left=chr12:58808108-58808423;Right=chr12:58811304-58811664
chr12	CG	SV	58811304	58811664	61	+	.	ID=2512;Type=deletion;Left=chr12:58808108-58808423;Right=chr12:58811304-58811664
chr12	CG	SV	64813912	64816623	85	.	.	ID=2511;Type=deletion;Left=chr12:64813912-64814345+;Right=chr12:64816153-64816623+;Distance=2241;DiscordantMatePairAlignments=85;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67481727 (chr12:64813918-64816159);Frequency=0.41
chr12	CG	SV	64813912	64814345	85	+	.	ID=2511;Type=deletion;Left=chr12:64813912-64814345;Right=chr12:64816153-64816623
chr12	CG	SV	64816153	64816623	85	+	.	ID=2511;Type=deletion;Left=chr12:64813912-64814345;Right=chr12:64816153-64816623
chr12	CG	SV	67833256	117217340	26	.	.	ID=1031;Type=tandem-duplication;Left=chr12:67833256-67833639-;Right=chr12:117217054-117217340-;Distance=49383701;DiscordantMatePairAlignments=26;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=NM_016281:-;XRef=;Frequency=0.59
chr12	CG	SV	67833256	67833639	26	-	.	ID=1031;Type=tandem-duplication;Left=chr12:67833256-67833639;Right=chr12:117217054-117217340
chr12	CG	SV	117217054	117217340	26	-	.	ID=1031;Type=tandem-duplication;Left=chr12:67833256-67833639;Right=chr12:117217054-117217340
chr12	CG	SV	68881130	68884318	71	.	.	ID=2509;Type=deletion;Left=chr12:68881130-68881493+;Right=chr12:68883861-68884318+;Distance=2731;DiscordantMatePairAlignments=71;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67387579 (chr12:68881131-68883862);Frequency=0.88
chr12	CG	SV	68881130	68881493	71	+	.	ID=2509;Type=deletion;Left=chr12:68881130-68881493;Right=chr12:68883861-68884318
chr12	CG	SV	68883861	68884318	71	+	.	ID=2509;Type=deletion;Left=chr12:68881130-68881493;Right=chr12:68883861-68884318
chr12	CG	SV	69818611	69820482	110	.	.	ID=266;Type=distal-duplication;Left=chr12:69818611-69819060-;Right=chr12:69820021-69820482+;Distance=961;DiscordantMatePairAlignments=110;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_004616:-;RightGenes=NM_004616:-;XRef=;Frequency=0.65
chr12	CG	SV	69818611	69819060	110	-	.	ID=266;Type=distal-duplication;Left=chr12:69818611-69819060;Right=chr12:69820021-69820482
chr12	CG	SV	69820021	69820482	110	-	.	ID=266;Type=distal-duplication;Left=chr12:69818611-69819060;Right=chr12:69820021-69820482
chr12	CG	SV	69819545	69820019	132	.	.	ID=4444;Type=distal-duplication;Left=chr12:69819545-69820002+;Right=chr12:69819591-69820019-;Distance=474;DiscordantMatePairAlignments=132;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_004616:-;RightGenes=NM_004616:-;XRef=;Frequency=0.65
chr12	CG	SV	69819545	69820002	132	+	.	ID=4444;Type=distal-duplication;Left=chr12:69819545-69820002;Right=chr12:69819591-69820019
chr12	CG	SV	69819591	69820019	132	+	.	ID=4444;Type=distal-duplication;Left=chr12:69819545-69820002;Right=chr12:69819591-69820019
chr12	CG	SV	70642936	70644841	36	.	.	ID=2508;Type=deletion;Left=chr12:70642936-70643342+;Right=chr12:70644500-70644841+;Distance=1564;DiscordantMatePairAlignments=36;LeftRepeat=AluSg/x:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Tandem period 9;LeftGenes=NM_173353:+;RightGenes=NM_173353:+;XRef=rs71042195 (chr12:70642884-70644448);Frequency=1.00
chr12	CG	SV	70642936	70643342	36	+	.	ID=2508;Type=deletion;Left=chr12:70642936-70643342;Right=chr12:70644500-70644841
chr12	CG	SV	70644500	70644841	36	+	.	ID=2508;Type=deletion;Left=chr12:70642936-70643342;Right=chr12:70644500-70644841
chr12	CG	SV	78678432	78686731	62	.	.	ID=1035;Type=tandem-duplication;Left=chr12:78678432-78678848-;Right=chr12:78686494-78686731-;Distance=7883;DiscordantMatePairAlignments=62;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr12	CG	SV	78678432	78678848	62	-	.	ID=1035;Type=tandem-duplication;Left=chr12:78678432-78678848;Right=chr12:78686494-78686731
chr12	CG	SV	78686494	78686731	62	-	.	ID=1035;Type=tandem-duplication;Left=chr12:78678432-78678848;Right=chr12:78686494-78686731
chr12	CG	SV	80663850	80668874	104	.	.	ID=2507;Type=deletion;Left=chr12:80663850-80664346+;Right=chr12:80668454-80668874+;Distance=4604;DiscordantMatePairAlignments=104;LeftRepeat=;RightRepeat=;LeftGenes=NM_003625:-;RightGenes=NM_003625:-;XRef=;Frequency=0.12
chr12	CG	SV	80663850	80664346	104	+	.	ID=2507;Type=deletion;Left=chr12:80663850-80664346;Right=chr12:80668454-80668874
chr12	CG	SV	80668454	80668874	104	+	.	ID=2507;Type=deletion;Left=chr12:80663850-80664346;Right=chr12:80668454-80668874
chr12	CG	SV	82368184	82369201	121	.	.	ID=2506;Type=deletion;Left=chr12:82368184-82368599+;Right=chr12:82368748-82369201+;Distance=564;DiscordantMatePairAlignments=121;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66762260 (chr12:82368175-82368739);Frequency=0.82
chr12	CG	SV	82368184	82368599	121	+	.	ID=2506;Type=deletion;Left=chr12:82368184-82368599;Right=chr12:82368748-82369201
chr12	CG	SV	82368748	82369201	121	+	.	ID=2506;Type=deletion;Left=chr12:82368184-82368599;Right=chr12:82368748-82369201
chr12	CG	SV	83117245	83120578	69	.	.	ID=2503;Type=deletion;Left=chr12:83117245-83117714+;Right=chr12:83120148-83120578+;Distance=2903;DiscordantMatePairAlignments=69;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72045293 (chr12:83117245-83120148);Frequency=0.71
chr12	CG	SV	83117245	83117714	69	+	.	ID=2503;Type=deletion;Left=chr12:83117245-83117714;Right=chr12:83120148-83120578
chr12	CG	SV	83120148	83120578	69	+	.	ID=2503;Type=deletion;Left=chr12:83117245-83117714;Right=chr12:83120148-83120578
chr12	CG	SV	85728563	85729977	12	.	.	ID=1034;Type=tandem-duplication;Left=chr12:85728563-85728964-;Right=chr12:85729834-85729977-;Distance=1013;DiscordantMatePairAlignments=12;LeftRepeat=L1MDb:LINE:L1;RightRepeat=L1MDb:LINE:L1;LeftGenes=NM_013244:-;RightGenes=NM_013244:-;XRef=;Frequency=0.88
chr12	CG	SV	85728563	85728964	12	-	.	ID=1034;Type=tandem-duplication;Left=chr12:85728563-85728964;Right=chr12:85729834-85729977
chr12	CG	SV	85729834	85729977	12	-	.	ID=1034;Type=tandem-duplication;Left=chr12:85728563-85728964;Right=chr12:85729834-85729977
chr12	CG	SV	92028424	92029893	72	.	.	ID=2500;Type=deletion;Left=chr12:92028424-92028784+;Right=chr12:92029510-92029893+;Distance=1086;DiscordantMatePairAlignments=72;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72391384 (chr12:92028431-92029518);Frequency=0.06
chr12	CG	SV	92028424	92028784	72	+	.	ID=2500;Type=deletion;Left=chr12:92028424-92028784;Right=chr12:92029510-92029893
chr12	CG	SV	92029510	92029893	72	+	.	ID=2500;Type=deletion;Left=chr12:92028424-92028784;Right=chr12:92029510-92029893
chr12	CG	SV	92368566	92370673	29	.	.	ID=1032;Type=tandem-duplication;Left=chr12:92368566-92368863-;Right=chr12:92370264-92370673-;Distance=1810;DiscordantMatePairAlignments=29;LeftRepeat=AluJ/FLAM:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr12	CG	SV	92368566	92368863	29	-	.	ID=1032;Type=tandem-duplication;Left=chr12:92368566-92368863;Right=chr12:92370264-92370673
chr12	CG	SV	92370264	92370673	29	-	.	ID=1032;Type=tandem-duplication;Left=chr12:92368566-92368863;Right=chr12:92370264-92370673
chr12	CG	SV	93768157	93768974	26	.	.	ID=2499;Type=deletion;Left=chr12:93768157-93768581+;Right=chr12:93768580-93768974+;Distance=423;DiscordantMatePairAlignments=26;LeftRepeat=L1MA4A:LINE:L1;RightRepeat=MSTB1:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs71045005 (chr12:93768157-93768580);Frequency=0.94
chr12	CG	SV	93768157	93768581	26	+	.	ID=2499;Type=deletion;Left=chr12:93768157-93768581;Right=chr12:93768580-93768974
chr12	CG	SV	93768580	93768974	26	+	.	ID=2499;Type=deletion;Left=chr12:93768157-93768581;Right=chr12:93768580-93768974
chr12	CG	SV	94757723	94760943	34	.	.	ID=2497;Type=deletion;Left=chr12:94757723-94758145+;Right=chr12:94760469-94760943+;Distance=2746;DiscordantMatePairAlignments=34;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66521162 (chr12:94757723-94760469);Frequency=0.94
chr12	CG	SV	94757723	94758145	34	+	.	ID=2497;Type=deletion;Left=chr12:94757723-94758145;Right=chr12:94760469-94760943
chr12	CG	SV	94760469	94760943	34	+	.	ID=2497;Type=deletion;Left=chr12:94757723-94758145;Right=chr12:94760469-94760943
chr12	CG	SV	96078872	96079643	33	.	.	ID=2496;Type=deletion;Left=chr12:96078872-96079394+;Right=chr12:96079200-96079643+;Distance=328;DiscordantMatePairAlignments=33;LeftRepeat=L2:LINE:L2;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs66686263 (chr12:96078872-96079200);Frequency=1.00
chr12	CG	SV	96078872	96079394	33	+	.	ID=2496;Type=deletion;Left=chr12:96078872-96079394;Right=chr12:96079200-96079643
chr12	CG	SV	96079200	96079643	33	+	.	ID=2496;Type=deletion;Left=chr12:96078872-96079394;Right=chr12:96079200-96079643
chr12	CG	SV	99200124	99200815	10	.	.	ID=2494;Type=deletion;Left=chr12:99200124-99200480+;Right=chr12:99200425-99200815+;Distance=301;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_017988:+;RightGenes=NM_017988:+;XRef=;Frequency=0.24
chr12	CG	SV	99200124	99200480	10	+	.	ID=2494;Type=deletion;Left=chr12:99200124-99200480;Right=chr12:99200425-99200815
chr12	CG	SV	99200425	99200815	10	+	.	ID=2494;Type=deletion;Left=chr12:99200124-99200480;Right=chr12:99200425-99200815
chr12	CG	SV	100626541	100631667	91	.	.	ID=2493;Type=deletion;Left=chr12:100626541-100626956+;Right=chr12:100631221-100631667+;Distance=4680;DiscordantMatePairAlignments=91;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L1MEc:LINE:L1;LeftGenes=NM_020244:+;RightGenes=NM_020244:+;XRef=;Frequency=0.53
chr12	CG	SV	100626541	100626956	91	+	.	ID=2493;Type=deletion;Left=chr12:100626541-100626956;Right=chr12:100631221-100631667
chr12	CG	SV	100631221	100631667	91	+	.	ID=2493;Type=deletion;Left=chr12:100626541-100626956;Right=chr12:100631221-100631667
chr12	CG	SV	102817537	102818312	20	.	.	ID=2492;Type=deletion;Left=chr12:102817537-102817951+;Right=chr12:102817865-102818312+;Distance=328;DiscordantMatePairAlignments=20;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NR_027249:-;RightGenes=NR_027249:-;XRef=rs10527536 (chr12:102817537-102817865);Frequency=1.00
chr12	CG	SV	102817537	102817951	20	+	.	ID=2492;Type=deletion;Left=chr12:102817537-102817951;Right=chr12:102817865-102818312
chr12	CG	SV	102817865	102818312	20	+	.	ID=2492;Type=deletion;Left=chr12:102817537-102817951;Right=chr12:102817865-102818312
chr12	CG	SV	102883561	124367638	58	.	.	ID=261;Type=complex;Left=chr12:102883561-102883759-;Right=chr12:124367100-124367638+;Distance=21483341;DiscordantMatePairAlignments=58;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_003211:+;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	102883561	102883759	58	-	.	ID=261;Type=complex;Left=chr12:102883561-102883759;Right=chr12:124367100-124367638
chr12	CG	SV	124367100	124367638	58	-	.	ID=261;Type=complex;Left=chr12:102883561-102883759;Right=chr12:124367100-124367638
chr12	CG	SV	102906672	124367117	10	.	.	ID=4443;Type=complex;Left=chr12:102906672-102906900+;Right=chr12:124366788-124367117-;Distance=21460445;DiscordantMatePairAlignments=10;LeftRepeat=SegDup;Self chain;RightRepeat=L2:LINE:L2;LeftGenes=NM_003211:+;RightGenes=;XRef=;Frequency=0.76
chr12	CG	SV	102906672	102906900	10	+	.	ID=4443;Type=complex;Left=chr12:102906672-102906900;Right=chr12:124366788-124367117
chr12	CG	SV	124366788	124367117	10	+	.	ID=4443;Type=complex;Left=chr12:102906672-102906900;Right=chr12:124366788-124367117
chr12	CG	SV	104297655	104298422	25	.	.	ID=2486;Type=deletion;Left=chr12:104297655-104298151+;Right=chr12:104297979-104298422+;Distance=324;DiscordantMatePairAlignments=25;LeftRepeat=AluY:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs71843479 (chr12:104297644-104297968);Frequency=0.88
chr12	CG	SV	104297655	104298151	25	+	.	ID=2486;Type=deletion;Left=chr12:104297655-104298151;Right=chr12:104297979-104298422
chr12	CG	SV	104297979	104298422	25	+	.	ID=2486;Type=deletion;Left=chr12:104297655-104298151;Right=chr12:104297979-104298422
chr12	CG	SV	121576304	121577066	26	.	.	ID=2483;Type=deletion;Left=chr12:121576304-121576707+;Right=chr12:121576633-121577066+;Distance=329;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_023012:-;NM_198261:-;NM_198262:-;RightGenes=NM_023012:-;NM_198261:-;NM_198262:-;XRef=rs10526242 (chr12:121576299-121576628);Frequency=0.82
chr12	CG	SV	121576304	121576707	26	+	.	ID=2483;Type=deletion;Left=chr12:121576304-121576707;Right=chr12:121576633-121577066
chr12	CG	SV	121576633	121577066	26	+	.	ID=2483;Type=deletion;Left=chr12:121576304-121576707;Right=chr12:121576633-121577066
chr12	CG	SV	123024520	123062476	12	.	.	ID=2480;Type=deletion;Left=chr12:123024520-123024652+;Right=chr12:123062043-123062476+;Distance=37523;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_152437:+;RightGenes=NM_152437:+;XRef=;Frequency=0.25
chr12	CG	SV	123024520	123024652	12	+	.	ID=2480;Type=deletion;Left=chr12:123024520-123024652;Right=chr12:123062043-123062476
chr12	CG	SV	123062043	123062476	12	+	.	ID=2480;Type=deletion;Left=chr12:123024520-123024652;Right=chr12:123062043-123062476
chr12	CG	SV	125349466	125356147	147	.	.	ID=2479;Type=deletion;Left=chr12:125349466-125349912+;Right=chr12:125355560-125356147+;Distance=6094;DiscordantMatePairAlignments=147;LeftRepeat=MSTB1:LTR:MaLR;Self chain;Tandem T;RightRepeat=MSTB1:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr12	CG	SV	125349466	125349912	147	+	.	ID=2479;Type=deletion;Left=chr12:125349466-125349912;Right=chr12:125355560-125356147
chr12	CG	SV	125355560	125356147	147	+	.	ID=2479;Type=deletion;Left=chr12:125349466-125349912;Right=chr12:125355560-125356147
chr12	CG	SV	128626256	128626901	25	.	.	ID=2476;Type=deletion;Left=chr12:128626256-128626648+;Right=chr12:128626587-128626901+;Distance=331;DiscordantMatePairAlignments=25;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_133448:-;RightGenes=NM_133448:-;XRef=rs68194414 (chr12:128626240-128626571);Frequency=0.94
chr12	CG	SV	128626256	128626648	25	+	.	ID=2476;Type=deletion;Left=chr12:128626256-128626648;Right=chr12:128626587-128626901
chr12	CG	SV	128626587	128626901	25	+	.	ID=2476;Type=deletion;Left=chr12:128626256-128626648;Right=chr12:128626587-128626901
chr12	CG	SV	129932872	129933596	17	.	.	ID=2474;Type=deletion;Left=chr12:129932872-129933332+;Right=chr12:129933416-129933596+;Distance=544;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem period 134;Tandem period 68;RightRepeat=Self chain;Tandem period 134;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr12	CG	SV	129932872	129933332	17	+	.	ID=2474;Type=deletion;Left=chr12:129932872-129933332;Right=chr12:129933416-129933596
chr12	CG	SV	129933416	129933596	17	+	.	ID=2474;Type=deletion;Left=chr12:129932872-129933332;Right=chr12:129933416-129933596
chr12	CG	SV	131452436	131453162	55	.	.	ID=2473;Type=deletion;Left=chr12:131452436-131452955+;Right=chr12:131452790-131453162+;Distance=354;DiscordantMatePairAlignments=55;LeftRepeat=Self chain;Tandem period 118;Tandem period 59;RightRepeat=Self chain;Tandem period 118;Tandem period 59;LeftGenes=;RightGenes=;XRef=rs72417838 (chr12:131452469-131452823);Frequency=0.88
chr12	CG	SV	131452436	131452955	55	+	.	ID=2473;Type=deletion;Left=chr12:131452436-131452955;Right=chr12:131452790-131453162
chr12	CG	SV	131452790	131453162	55	+	.	ID=2473;Type=deletion;Left=chr12:131452436-131452955;Right=chr12:131452790-131453162
chr13	CG	SV	24543201	24543734	15	.	.	ID=2467;Type=deletion;Left=chr13:24543201-24543695+;Right=chr13:24543520-24543734+;Distance=319;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr13	CG	SV	24543201	24543695	15	+	.	ID=2467;Type=deletion;Left=chr13:24543201-24543695;Right=chr13:24543520-24543734
chr13	CG	SV	24543520	24543734	15	+	.	ID=2467;Type=deletion;Left=chr13:24543201-24543695;Right=chr13:24543520-24543734
chr13	CG	SV	28852771	28853546	28	.	.	ID=2462;Type=deletion;Left=chr13:28852771-28853200+;Right=chr13:28853095-28853546+;Distance=324;DiscordantMatePairAlignments=28;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001033602:+;RightGenes=NM_001033602:+;XRef=rs67907214 (chr13:28852757-28853081);Frequency=0.94
chr13	CG	SV	28852771	28853200	28	+	.	ID=2462;Type=deletion;Left=chr13:28852771-28853200;Right=chr13:28853095-28853546
chr13	CG	SV	28853095	28853546	28	+	.	ID=2462;Type=deletion;Left=chr13:28852771-28853200;Right=chr13:28853095-28853546
chr13	CG	SV	36312467	36313304	19	.	.	ID=2457;Type=deletion;Left=chr13:36312467-36312897+;Right=chr13:36312787-36313304+;Distance=320;DiscordantMatePairAlignments=19;LeftRepeat=LTR1:LTR:ERV1;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs71079183 (chr13:36312467-36312787);Frequency=1.00
chr13	CG	SV	36312467	36312897	19	+	.	ID=2457;Type=deletion;Left=chr13:36312467-36312897;Right=chr13:36312787-36313304
chr13	CG	SV	36312787	36313304	19	+	.	ID=2457;Type=deletion;Left=chr13:36312467-36312897;Right=chr13:36312787-36313304
chr13	CG	SV	36969943	36983885	16	.	.	ID=2456;Type=deletion;Left=chr13:36969943-36970359+;Right=chr13:36983580-36983885+;Distance=13637;DiscordantMatePairAlignments=16;LeftRepeat=AluSg/x:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr13	CG	SV	36969943	36970359	16	+	.	ID=2456;Type=deletion;Left=chr13:36969943-36970359;Right=chr13:36983580-36983885
chr13	CG	SV	36983580	36983885	16	+	.	ID=2456;Type=deletion;Left=chr13:36969943-36970359;Right=chr13:36983580-36983885
chr13	CG	SV	41844886	41845652	120	.	.	ID=1026;Type=tandem-duplication;Left=chr13:41844886-41845268-;Right=chr13:41845273-41845652-;Distance=384;DiscordantMatePairAlignments=120;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr13	CG	SV	41844886	41845268	120	-	.	ID=1026;Type=tandem-duplication;Left=chr13:41844886-41845268;Right=chr13:41845273-41845652
chr13	CG	SV	41845273	41845652	120	-	.	ID=1026;Type=tandem-duplication;Left=chr13:41844886-41845268;Right=chr13:41845273-41845652
chr13	CG	SV	41951309	41952341	77	.	.	ID=2452;Type=deletion;Left=chr13:41951309-41951739+;Right=chr13:41951953-41952341+;Distance=644;DiscordantMatePairAlignments=77;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72375475 (chr13:41951191-41951835);Frequency=0.29
chr13	CG	SV	41951309	41951739	77	+	.	ID=2452;Type=deletion;Left=chr13:41951309-41951739;Right=chr13:41951953-41952341
chr13	CG	SV	41951953	41952341	77	+	.	ID=2452;Type=deletion;Left=chr13:41951309-41951739;Right=chr13:41951953-41952341
chr13	CG	SV	42437804	42439958	215	.	.	ID=2451;Type=deletion;Left=chr13:42437804-42438247+;Right=chr13:42439457-42439958+;Distance=1653;DiscordantMatePairAlignments=215;LeftRepeat=;RightRepeat=;LeftGenes=NM_001002264:-;NM_033255:-;RightGenes=NM_001002264:-;NM_033255:-;XRef=rs67713275 (chr13:42437794-42439447);Frequency=0.82
chr13	CG	SV	42437804	42438247	215	+	.	ID=2451;Type=deletion;Left=chr13:42437804-42438247;Right=chr13:42439457-42439958
chr13	CG	SV	42439457	42439958	215	+	.	ID=2451;Type=deletion;Left=chr13:42437804-42438247;Right=chr13:42439457-42439958
chr13	CG	SV	44903455	44904030	16	.	.	ID=2450;Type=deletion;Left=chr13:44903455-44903919+;Right=chr13:44903792-44904030+;Distance=337;DiscordantMatePairAlignments=16;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	44903455	44903919	16	+	.	ID=2450;Type=deletion;Left=chr13:44903455-44903919;Right=chr13:44903792-44904030
chr13	CG	SV	44903792	44904030	16	+	.	ID=2450;Type=deletion;Left=chr13:44903455-44903919;Right=chr13:44903792-44904030
chr13	CG	SV	46587491	46588225	10	.	.	ID=2449;Type=deletion;Left=chr13:46587491-46587843+;Right=chr13:46587805-46588225+;Distance=314;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67642713 (chr13:46587491-46587805);Frequency=1.00
chr13	CG	SV	46587491	46587843	10	+	.	ID=2449;Type=deletion;Left=chr13:46587491-46587843;Right=chr13:46587805-46588225
chr13	CG	SV	46587805	46588225	10	+	.	ID=2449;Type=deletion;Left=chr13:46587491-46587843;Right=chr13:46587805-46588225
chr13	CG	SV	49967351	49973451	66	.	.	ID=2446;Type=deletion;Left=chr13:49967351-49967735+;Right=chr13:49973083-49973451+;Distance=5732;DiscordantMatePairAlignments=66;LeftRepeat=Self chain;RightRepeat=MSTB-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67883993 (chr13:49967351-49973083);Frequency=0.94
chr13	CG	SV	49967351	49967735	66	+	.	ID=2446;Type=deletion;Left=chr13:49967351-49967735;Right=chr13:49973083-49973451
chr13	CG	SV	49973083	49973451	66	+	.	ID=2446;Type=deletion;Left=chr13:49967351-49967735;Right=chr13:49973083-49973451
chr13	CG	SV	57284070	57284773	13	.	.	ID=2442;Type=deletion;Left=chr13:57284070-57284423+;Right=chr13:57284452-57284773+;Distance=382;DiscordantMatePairAlignments=13;LeftRepeat=L1MA6:LINE:L1;RightRepeat=L1MA6:LINE:L1;LeftGenes=;RightGenes=;XRef=rs6145078 (chr13:57284074-57284452);Frequency=0.35
chr13	CG	SV	57284070	57284423	13	+	.	ID=2442;Type=deletion;Left=chr13:57284070-57284423;Right=chr13:57284452-57284773
chr13	CG	SV	57284452	57284773	13	+	.	ID=2442;Type=deletion;Left=chr13:57284070-57284423;Right=chr13:57284452-57284773
chr13	CG	SV	59070500	59071186	13	.	.	ID=2441;Type=deletion;Left=chr13:59070500-59070949+;Right=chr13:59070833-59071186+;Distance=333;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=L1MDa:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71085620 (chr13:59070500-59070833);Frequency=1.00
chr13	CG	SV	59070500	59070949	13	+	.	ID=2441;Type=deletion;Left=chr13:59070500-59070949;Right=chr13:59070833-59071186
chr13	CG	SV	59070833	59071186	13	+	.	ID=2441;Type=deletion;Left=chr13:59070500-59070949;Right=chr13:59070833-59071186
chr13	CG	SV	62503489	62504145	23	.	.	ID=260;Type=probable-inversion;Left=chr13:62503489-62503564-;Right=chr13:62503672-62504145+;Distance=108;DiscordantMatePairAlignments=23;LeftRepeat=L2:LINE:L2;SegDup;RightRepeat=L2:LINE:L2;SegDup;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	62503489	62503564	23	-	.	ID=260;Type=probable-inversion;Left=chr13:62503489-62503564;Right=chr13:62503672-62504145
chr13	CG	SV	62503672	62504145	23	-	.	ID=260;Type=probable-inversion;Left=chr13:62503489-62503564;Right=chr13:62503672-62504145
chr13	CG	SV	66072777	66075772	29	.	.	ID=2435;Type=deletion;Left=chr13:66072777-66073108+;Right=chr13:66075419-66075772+;Distance=2642;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=;LeftGenes=NM_020403:-;NM_203487:-;RightGenes=NM_020403:-;NM_203487:-;XRef=;Frequency=0.53
chr13	CG	SV	66072777	66073108	29	+	.	ID=2435;Type=deletion;Left=chr13:66072777-66073108;Right=chr13:66075419-66075772
chr13	CG	SV	66075419	66075772	29	+	.	ID=2435;Type=deletion;Left=chr13:66072777-66073108;Right=chr13:66075419-66075772
chr13	CG	SV	67875874	67876538	16	.	.	ID=2433;Type=deletion;Left=chr13:67875874-67876295+;Right=chr13:67876198-67876538+;Distance=324;DiscordantMatePairAlignments=16;LeftRepeat=L1MCa:LINE:L1;RightRepeat=L1MCa:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr13	CG	SV	67875874	67876295	16	+	.	ID=2433;Type=deletion;Left=chr13:67875874-67876295;Right=chr13:67876198-67876538
chr13	CG	SV	67876198	67876538	16	+	.	ID=2433;Type=deletion;Left=chr13:67875874-67876295;Right=chr13:67876198-67876538
chr13	CG	SV	72972922	72973695	33	.	.	ID=2430;Type=deletion;Left=chr13:72972922-72973401+;Right=chr13:72973250-72973695+;Distance=328;DiscordantMatePairAlignments=33;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10704972 (chr13:72972922-72973250);Frequency=0.94
chr13	CG	SV	72972922	72973401	33	+	.	ID=2430;Type=deletion;Left=chr13:72972922-72973401;Right=chr13:72973250-72973695
chr13	CG	SV	72973250	72973695	33	+	.	ID=2430;Type=deletion;Left=chr13:72972922-72973401;Right=chr13:72973250-72973695
chr13	CG	SV	76277642	82255600	16	.	.	ID=1024;Type=tandem-duplication;Left=chr13:76277642-76278236-;Right=chr13:82255126-82255600-;Distance=5977364;DiscordantMatePairAlignments=16;LeftRepeat=AluJb:SINE:Alu;RightRepeat=Tigger2:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	76277642	76278236	16	-	.	ID=1024;Type=tandem-duplication;Left=chr13:76277642-76278236;Right=chr13:82255126-82255600
chr13	CG	SV	82255126	82255600	16	-	.	ID=1024;Type=tandem-duplication;Left=chr13:76277642-76278236;Right=chr13:82255126-82255600
chr13	CG	SV	77662970	77666370	132	.	.	ID=2427;Type=deletion;Left=chr13:77662970-77663406+;Right=chr13:77665838-77666370+;Distance=2868;DiscordantMatePairAlignments=132;LeftRepeat=MER21B:LTR:ERV1;RightRepeat=L1MEc:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr13	CG	SV	77662970	77663406	132	+	.	ID=2427;Type=deletion;Left=chr13:77662970-77663406;Right=chr13:77665838-77666370
chr13	CG	SV	77665838	77666370	132	+	.	ID=2427;Type=deletion;Left=chr13:77662970-77663406;Right=chr13:77665838-77666370
chr13	CG	SV	77895793	77897152	22	.	.	ID=2426;Type=deletion;Left=chr13:77895793-77896212+;Right=chr13:77896892-77897152+;Distance=1099;DiscordantMatePairAlignments=22;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71729399 (chr13:77895641-77896751);Frequency=0.53
chr13	CG	SV	77895793	77896212	22	+	.	ID=2426;Type=deletion;Left=chr13:77895793-77896212;Right=chr13:77896892-77897152
chr13	CG	SV	77896892	77897152	22	+	.	ID=2426;Type=deletion;Left=chr13:77895793-77896212;Right=chr13:77896892-77897152
chr13	CG	SV	78559082	78559864	22	.	.	ID=2425;Type=deletion;Left=chr13:78559082-78559542+;Right=chr13:78559417-78559864+;Distance=335;DiscordantMatePairAlignments=22;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NR_030317:-;RightGenes=NR_030317:-;XRef=rs10525791 (chr13:78559082-78559417);Frequency=0.88
chr13	CG	SV	78559082	78559542	22	+	.	ID=2425;Type=deletion;Left=chr13:78559082-78559542;Right=chr13:78559417-78559864
chr13	CG	SV	78559417	78559864	22	+	.	ID=2425;Type=deletion;Left=chr13:78559082-78559542;Right=chr13:78559417-78559864
chr13	CG	SV	79576331	79577090	10	.	.	ID=2424;Type=deletion;Left=chr13:79576331-79576688+;Right=chr13:79576648-79577090+;Distance=317;DiscordantMatePairAlignments=10;LeftRepeat=AluYh9:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67931568 (chr13:79576325-79576642);Frequency=0.76
chr13	CG	SV	79576331	79576688	10	+	.	ID=2424;Type=deletion;Left=chr13:79576331-79576688;Right=chr13:79576648-79577090
chr13	CG	SV	79576648	79577090	10	+	.	ID=2424;Type=deletion;Left=chr13:79576331-79576688;Right=chr13:79576648-79577090
chr13	CG	SV	80645249	80646000	30	.	.	ID=2423;Type=deletion;Left=chr13:80645249-80645730+;Right=chr13:80645577-80646000+;Distance=328;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67616974 (chr13:80645237-80645565);Frequency=0.94
chr13	CG	SV	80645249	80645730	30	+	.	ID=2423;Type=deletion;Left=chr13:80645249-80645730;Right=chr13:80645577-80646000
chr13	CG	SV	80645577	80646000	30	+	.	ID=2423;Type=deletion;Left=chr13:80645249-80645730;Right=chr13:80645577-80646000
chr13	CG	SV	81254873	81254960	12	.	.	ID=4435;Type=inversion;Left=chr13:81254873-81255305+;Right=chr13:81254875-81254960-;Distance=87;DiscordantMatePairAlignments=12;LeftRepeat=HERVL40:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	81254873	81255305	12	+	.	ID=4435;Type=inversion;Left=chr13:81254873-81255305;Right=chr13:81254875-81254960
chr13	CG	SV	81254875	81254960	12	+	.	ID=4435;Type=inversion;Left=chr13:81254873-81255305;Right=chr13:81254875-81254960
chr13	CG	SV	81254788	81255379	16	.	.	ID=256;Type=inversion;Left=chr13:81254788-81254877-;Right=chr13:81254977-81255379+;Distance=100;DiscordantMatePairAlignments=16;LeftRepeat=HERVL40:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	81254788	81254877	16	-	.	ID=256;Type=inversion;Left=chr13:81254788-81254877;Right=chr13:81254977-81255379
chr13	CG	SV	81254977	81255379	16	-	.	ID=256;Type=inversion;Left=chr13:81254788-81254877;Right=chr13:81254977-81255379
chr13	CG	SV	82063937	82070608	16	.	.	ID=2422;Type=deletion;Left=chr13:82063937-82064323+;Right=chr13:82070208-82070608+;Distance=6271;DiscordantMatePairAlignments=16;LeftRepeat=L1MA4A:LINE:L1;RightRepeat=MER67D:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs72197596 (chr13:82063937-82070208);Frequency=0.29
chr13	CG	SV	82063937	82064323	16	+	.	ID=2422;Type=deletion;Left=chr13:82063937-82064323;Right=chr13:82070208-82070608
chr13	CG	SV	82070208	82070608	16	+	.	ID=2422;Type=deletion;Left=chr13:82063937-82064323;Right=chr13:82070208-82070608
chr13	CG	SV	83147490	83147923	38	+	.	ID=2062;Type=interchromosomal;Left=chr13:83147490-83147923+;Right=chr19:9093770-9094177+;Distance=;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	9093770	9094177	38	+	.	ID=2062;Type=interchromosomal;Left=chr13:83147490-83147923+;Right=chr19:9093770-9094177+;Distance=;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	89660856	89663164	47	.	.	ID=2407;Type=deletion;Left=chr13:89660856-89661346+;Right=chr13:89662811-89663164+;Distance=1955;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr13	CG	SV	89660856	89661346	47	+	.	ID=2407;Type=deletion;Left=chr13:89660856-89661346;Right=chr13:89662811-89663164
chr13	CG	SV	89662811	89663164	47	+	.	ID=2407;Type=deletion;Left=chr13:89660856-89661346;Right=chr13:89662811-89663164
chr13	CG	SV	92042627	92044363	28	.	.	ID=2406;Type=deletion;Left=chr13:92042627-92043057+;Right=chr13:92044021-92044363+;Distance=1394;DiscordantMatePairAlignments=28;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_004466:+;RightGenes=NM_004466:+;XRef=;Frequency=0.00
chr13	CG	SV	92042627	92043057	28	+	.	ID=2406;Type=deletion;Left=chr13:92042627-92043057;Right=chr13:92044021-92044363
chr13	CG	SV	92044021	92044363	28	+	.	ID=2406;Type=deletion;Left=chr13:92042627-92043057;Right=chr13:92044021-92044363
chr13	CG	SV	95431437	95432231	12	.	.	ID=2404;Type=deletion;Left=chr13:95431437-95431764+;Right=chr13:95431755-95432231+;Distance=318;DiscordantMatePairAlignments=12;LeftRepeat=AluYh9:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_020121:-;RightGenes=NM_020121:-;XRef=rs67938194 (chr13:95431437-95431755);Frequency=1.00
chr13	CG	SV	95431437	95431764	12	+	.	ID=2404;Type=deletion;Left=chr13:95431437-95431764;Right=chr13:95431755-95432231
chr13	CG	SV	95431755	95432231	12	+	.	ID=2404;Type=deletion;Left=chr13:95431437-95431764;Right=chr13:95431755-95432231
chr13	CG	SV	96739659	96742619	17	.	.	ID=2403;Type=deletion;Left=chr13:96739659-96740031+;Right=chr13:96742213-96742619+;Distance=2554;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_144778:+;NM_207304:+;RightGenes=NM_144778:+;NM_207304:+;XRef=;Frequency=0.00
chr13	CG	SV	96739659	96740031	17	+	.	ID=2403;Type=deletion;Left=chr13:96739659-96740031;Right=chr13:96742213-96742619
chr13	CG	SV	96742213	96742619	17	+	.	ID=2403;Type=deletion;Left=chr13:96739659-96740031;Right=chr13:96742213-96742619
chr13	CG	SV	98052256	98056715	27	.	.	ID=2401;Type=deletion;Left=chr13:98052256-98052636+;Right=chr13:98056525-98056715+;Distance=4269;DiscordantMatePairAlignments=27;LeftRepeat=AluSx:SINE:Alu;RightRepeat=(TA)n:Simple_repeat:Simple_repeat;Tandem ATATAT;Tandem period 30;LeftGenes=;RightGenes=;XRef=rs71085656 (chr13:98052256-98056525);Frequency=0.59
chr13	CG	SV	98052256	98052636	27	+	.	ID=2401;Type=deletion;Left=chr13:98052256-98052636;Right=chr13:98056525-98056715
chr13	CG	SV	98056525	98056715	27	+	.	ID=2401;Type=deletion;Left=chr13:98052256-98052636;Right=chr13:98056525-98056715
chr13	CG	SV	99929879	99930363	14	.	.	ID=1005;Type=tandem-duplication;Left=chr13:99929879-99930116-;Right=chr13:99930125-99930363-;Distance=247;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=;LeftGenes=NM_000282:+;NM_001127692:+;RightGenes=NM_000282:+;NM_001127692:+;XRef=;Frequency=0.35
chr13	CG	SV	99929879	99930116	14	-	.	ID=1005;Type=tandem-duplication;Left=chr13:99929879-99930116;Right=chr13:99930125-99930363
chr13	CG	SV	99930125	99930363	14	-	.	ID=1005;Type=tandem-duplication;Left=chr13:99929879-99930116;Right=chr13:99930125-99930363
chr13	CG	SV	100692147	100694815	33	.	.	ID=2400;Type=deletion;Left=chr13:100692147-100692600+;Right=chr13:100694428-100694815+;Distance=2281;DiscordantMatePairAlignments=33;LeftRepeat=L1MEd:LINE:L1;RightRepeat=;LeftGenes=NM_052867:-;RightGenes=NM_052867:-;XRef=rs71085658 (chr13:100692147-100694428);Frequency=0.82
chr13	CG	SV	100692147	100692600	33	+	.	ID=2400;Type=deletion;Left=chr13:100692147-100692600;Right=chr13:100694428-100694815
chr13	CG	SV	100694428	100694815	33	+	.	ID=2400;Type=deletion;Left=chr13:100692147-100692600;Right=chr13:100694428-100694815
chr13	CG	SV	102729653	102730372	10	.	.	ID=2398;Type=deletion;Left=chr13:102729653-102730003+;Right=chr13:102729968-102730372+;Distance=315;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10526596 (chr13:102729653-102729968);Frequency=0.65
chr13	CG	SV	102729653	102730003	10	+	.	ID=2398;Type=deletion;Left=chr13:102729653-102730003;Right=chr13:102729968-102730372
chr13	CG	SV	102729968	102730372	10	+	.	ID=2398;Type=deletion;Left=chr13:102729653-102730003;Right=chr13:102729968-102730372
chr13	CG	SV	102807864	102808568	15	.	.	ID=2397;Type=deletion;Left=chr13:102807864-102808269+;Right=chr13:102808183-102808568+;Distance=319;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6145207 (chr13:102807855-102808174);Frequency=0.41
chr13	CG	SV	102807864	102808269	15	+	.	ID=2397;Type=deletion;Left=chr13:102807864-102808269;Right=chr13:102808183-102808568
chr13	CG	SV	102808183	102808568	15	+	.	ID=2397;Type=deletion;Left=chr13:102807864-102808269;Right=chr13:102808183-102808568
chr13	CG	SV	102889766	102890560	31	.	.	ID=2396;Type=deletion;Left=chr13:102889766-102890342+;Right=chr13:102890248-102890560+;Distance=482;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66819995 (chr13:102889765-102890247);Frequency=1.00
chr13	CG	SV	102889766	102890342	31	+	.	ID=2396;Type=deletion;Left=chr13:102889766-102890342;Right=chr13:102890248-102890560
chr13	CG	SV	102890248	102890560	31	+	.	ID=2396;Type=deletion;Left=chr13:102889766-102890342;Right=chr13:102890248-102890560
chr13	CG	SV	107745025	107750242	40	.	.	ID=2392;Type=deletion;Left=chr13:107745025-107745263+;Right=chr13:107749811-107750242+;Distance=4786;DiscordantMatePairAlignments=40;LeftRepeat=L1MB5:LINE:L1;RightRepeat=L1MB5:LINE:L1;LeftGenes=NM_001145645:+;NM_006573:+;RightGenes=NM_001145645:+;NM_006573:+;XRef=;Frequency=0.24
chr13	CG	SV	107745025	107745263	40	+	.	ID=2392;Type=deletion;Left=chr13:107745025-107745263;Right=chr13:107749811-107750242
chr13	CG	SV	107749811	107750242	40	+	.	ID=2392;Type=deletion;Left=chr13:107745025-107745263;Right=chr13:107749811-107750242
chr13	CG	SV	108159749	108160827	80	.	.	ID=2391;Type=deletion;Left=chr13:108159749-108160198+;Right=chr13:108160441-108160827+;Distance=692;DiscordantMatePairAlignments=80;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_015011:+;RightGenes=NM_015011:+;XRef=;Frequency=0.53
chr13	CG	SV	108159749	108160198	80	+	.	ID=2391;Type=deletion;Left=chr13:108159749-108160198;Right=chr13:108160441-108160827
chr13	CG	SV	108160441	108160827	80	+	.	ID=2391;Type=deletion;Left=chr13:108159749-108160198;Right=chr13:108160441-108160827
chr13	CG	SV	110502493	110503240	51	.	.	ID=2389;Type=deletion;Left=chr13:110502493-110502920+;Right=chr13:110502976-110503240+;Distance=483;DiscordantMatePairAlignments=51;LeftRepeat=Self chain;Tandem period 134;Tandem period 27;RightRepeat=MER39:LTR:ERV1;Self chain;Tandem period 134;Tandem period 27;LeftGenes=;RightGenes=;XRef=rs71085666 (chr13:110502520-110502896);Frequency=0.94
chr13	CG	SV	110502493	110502920	51	+	.	ID=2389;Type=deletion;Left=chr13:110502493-110502920;Right=chr13:110502976-110503240
chr13	CG	SV	110502976	110503240	51	+	.	ID=2389;Type=deletion;Left=chr13:110502493-110502920;Right=chr13:110502976-110503240
chr13	CG	SV	112469267	112470099	19	.	.	ID=2387;Type=deletion;Left=chr13:112469267-112469699+;Right=chr13:112469863-112470099+;Distance=596;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;Tandem period 159;Tandem period 40;Tandem period 79;RightRepeat=Self chain;Tandem period 159;Tandem period 40;Tandem period 79;LeftGenes=NM_015205:+;NM_032189:+;RightGenes=NM_015205:+;NM_032189:+;XRef=;Frequency=0.12
chr13	CG	SV	112469267	112469699	19	+	.	ID=2387;Type=deletion;Left=chr13:112469267-112469699;Right=chr13:112469863-112470099
chr13	CG	SV	112469863	112470099	19	+	.	ID=2387;Type=deletion;Left=chr13:112469267-112469699;Right=chr13:112469863-112470099
chr13	CG	SV	114008694	114010417	118	.	.	ID=2386;Type=deletion;Left=chr13:114008694-114009098+;Right=chr13:114009982-114010417+;Distance=1288;DiscordantMatePairAlignments=118;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr13	CG	SV	114008694	114009098	118	+	.	ID=2386;Type=deletion;Left=chr13:114008694-114009098;Right=chr13:114009982-114010417
chr13	CG	SV	114009982	114010417	118	+	.	ID=2386;Type=deletion;Left=chr13:114008694-114009098;Right=chr13:114009982-114010417
chr14	CG	SV	20605984	20606784	22	.	.	ID=2385;Type=deletion;Left=chr14:20605984-20606404+;Right=chr14:20606310-20606784+;Distance=326;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6145263 (chr14:20605984-20606310);Frequency=0.88
chr14	CG	SV	20605984	20606404	22	+	.	ID=2385;Type=deletion;Left=chr14:20605984-20606404;Right=chr14:20606310-20606784
chr14	CG	SV	20606310	20606784	22	+	.	ID=2385;Type=deletion;Left=chr14:20605984-20606404;Right=chr14:20606310-20606784
chr14	CG	SV	21100019	21101876	27	.	.	ID=2384;Type=deletion;Left=chr14:21100019-21100493+;Right=chr14:21101665-21101876+;Distance=1646;DiscordantMatePairAlignments=27;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr14	CG	SV	21100019	21100493	27	+	.	ID=2384;Type=deletion;Left=chr14:21100019-21100493;Right=chr14:21101665-21101876
chr14	CG	SV	21101665	21101876	27	+	.	ID=2384;Type=deletion;Left=chr14:21100019-21100493;Right=chr14:21101665-21101876
chr14	CG	SV	21844675	21845513	44	.	.	ID=2383;Type=deletion;Left=chr14:21844675-21845121+;Right=chr14:21845208-21845513+;Distance=533;DiscordantMatePairAlignments=44;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=MLT1J:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=rs68048505 (chr14:21844675-21845208);Frequency=0.12
chr14	CG	SV	21844675	21845121	44	+	.	ID=2383;Type=deletion;Left=chr14:21844675-21845121;Right=chr14:21845208-21845513
chr14	CG	SV	21845208	21845513	44	+	.	ID=2383;Type=deletion;Left=chr14:21844675-21845121;Right=chr14:21845208-21845513
chr14	CG	SV	21951507	21952636	202	.	.	ID=2382;Type=deletion;Left=chr14:21951507-21951971+;Right=chr14:21952100-21952636+;Distance=593;DiscordantMatePairAlignments=202;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66716556 (chr14:21951506-21952099);Frequency=0.94
chr14	CG	SV	21951507	21951971	202	+	.	ID=2382;Type=deletion;Left=chr14:21951507-21951971;Right=chr14:21952100-21952636
chr14	CG	SV	21952100	21952636	202	+	.	ID=2382;Type=deletion;Left=chr14:21951507-21951971;Right=chr14:21952100-21952636
chr14	CG	SV	22122064	22123836	123	.	.	ID=2381;Type=deletion;Left=chr14:22122064-22122522+;Right=chr14:22123393-22123836+;Distance=1329;DiscordantMatePairAlignments=123;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_001344:-;RightGenes=NM_001344:-;XRef=;Frequency=0.00
chr14	CG	SV	22122064	22122522	123	+	.	ID=2381;Type=deletion;Left=chr14:22122064-22122522;Right=chr14:22123393-22123836
chr14	CG	SV	22123393	22123836	123	+	.	ID=2381;Type=deletion;Left=chr14:22122064-22122522;Right=chr14:22123393-22123836
chr14	CG	SV	22174969	22177907	20	.	.	ID=2380;Type=complex;Left=chr14:22174969-22175447+;Right=chr14:22177804-22177907+;Distance=2835;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr14	CG	SV	22174969	22175447	20	+	.	ID=2380;Type=complex;Left=chr14:22174969-22175447;Right=chr14:22177804-22177907
chr14	CG	SV	22177804	22177907	20	+	.	ID=2380;Type=complex;Left=chr14:22174969-22175447;Right=chr14:22177804-22177907
chr14	CG	SV	22174969	22179310	47	.	.	ID=2379;Type=complex;Left=chr14:22174969-22175272+;Right=chr14:22179110-22179310+;Distance=4141;DiscordantMatePairAlignments=47;LeftRepeat=Self chain;RightRepeat=SVA:Other:Other;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr14	CG	SV	22174969	22175272	47	+	.	ID=2379;Type=complex;Left=chr14:22174969-22175272;Right=chr14:22179110-22179310
chr14	CG	SV	22179110	22179310	47	+	.	ID=2379;Type=complex;Left=chr14:22174969-22175272;Right=chr14:22179110-22179310
chr14	CG	SV	22992091	22993007	16	.	.	ID=2378;Type=deletion;Left=chr14:22992091-22992465+;Right=chr14:22992491-22993007+;Distance=400;DiscordantMatePairAlignments=16;LeftRepeat=Charlie5:DNA:MER1_type;Self chain;RightRepeat=L1MCb:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr14	CG	SV	22992091	22992465	16	+	.	ID=2378;Type=deletion;Left=chr14:22992091-22992465;Right=chr14:22992491-22993007
chr14	CG	SV	22992491	22993007	16	+	.	ID=2378;Type=deletion;Left=chr14:22992091-22992465;Right=chr14:22992491-22993007
chr14	CG	SV	25660799	25662690	53	.	.	ID=2376;Type=deletion;Left=chr14:25660799-25661225+;Right=chr14:25662232-25662690+;Distance=1433;DiscordantMatePairAlignments=53;LeftRepeat=L3:LINE:CR1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr14	CG	SV	25660799	25661225	53	+	.	ID=2376;Type=deletion;Left=chr14:25660799-25661225;Right=chr14:25662232-25662690
chr14	CG	SV	25662232	25662690	53	+	.	ID=2376;Type=deletion;Left=chr14:25660799-25661225;Right=chr14:25662232-25662690
chr14	CG	SV	28797795	28799065	140	.	.	ID=2375;Type=deletion;Left=chr14:28797795-28798225+;Right=chr14:28798559-28799065+;Distance=764;DiscordantMatePairAlignments=140;LeftRepeat=L1MC3:LINE:L1;RightRepeat=L1MC3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr14	CG	SV	28797795	28798225	140	+	.	ID=2375;Type=deletion;Left=chr14:28797795-28798225;Right=chr14:28798559-28799065
chr14	CG	SV	28798559	28799065	140	+	.	ID=2375;Type=deletion;Left=chr14:28797795-28798225;Right=chr14:28798559-28799065
chr14	CG	SV	31012760	31013572	11	.	.	ID=2372;Type=deletion;Left=chr14:31012760-31013190+;Right=chr14:31013085-31013572+;Distance=325;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35663119 (chr14:31012746-31013071);Frequency=0.82
chr14	CG	SV	31012760	31013190	11	+	.	ID=2372;Type=deletion;Left=chr14:31012760-31013190;Right=chr14:31013085-31013572
chr14	CG	SV	31013085	31013572	11	+	.	ID=2372;Type=deletion;Left=chr14:31012760-31013190;Right=chr14:31013085-31013572
chr14	CG	SV	33359799	33360532	14	.	.	ID=2371;Type=deletion;Left=chr14:33359799-33360232+;Right=chr14:33360138-33360532+;Distance=339;DiscordantMatePairAlignments=14;LeftRepeat=AluYb9:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67229762 (chr14:33359799-33360138);Frequency=1.00
chr14	CG	SV	33359799	33360232	14	+	.	ID=2371;Type=deletion;Left=chr14:33359799-33360232;Right=chr14:33360138-33360532
chr14	CG	SV	33360138	33360532	14	+	.	ID=2371;Type=deletion;Left=chr14:33359799-33360232;Right=chr14:33360138-33360532
chr14	CG	SV	33583777	33584961	12	.	.	ID=2370;Type=deletion;Left=chr14:33583777-33584157+;Right=chr14:33584587-33584961+;Distance=810;DiscordantMatePairAlignments=12;LeftRepeat=HAL1:LINE:L1;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72415809 (chr14:33583777-33584585);Frequency=0.35
chr14	CG	SV	33583777	33584157	12	+	.	ID=2370;Type=deletion;Left=chr14:33583777-33584157;Right=chr14:33584587-33584961
chr14	CG	SV	33584587	33584961	12	+	.	ID=2370;Type=deletion;Left=chr14:33583777-33584157;Right=chr14:33584587-33584961
chr14	CG	SV	39168155	39170326	83	.	.	ID=2367;Type=deletion;Left=chr14:39168155-39168598+;Right=chr14:39169977-39170326+;Distance=1822;DiscordantMatePairAlignments=83;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66498065 (chr14:39168160-39169982);Frequency=0.59
chr14	CG	SV	39168155	39168598	83	+	.	ID=2367;Type=deletion;Left=chr14:39168155-39168598;Right=chr14:39169977-39170326
chr14	CG	SV	39169977	39170326	83	+	.	ID=2367;Type=deletion;Left=chr14:39168155-39168598;Right=chr14:39169977-39170326
chr14	CG	SV	41556085	41556808	18	.	.	ID=2365;Type=deletion;Left=chr14:41556085-41556576+;Right=chr14:41556400-41556808+;Distance=315;DiscordantMatePairAlignments=18;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10529794 (chr14:41556085-41556400);Frequency=0.88
chr14	CG	SV	41556085	41556576	18	+	.	ID=2365;Type=deletion;Left=chr14:41556085-41556576;Right=chr14:41556400-41556808
chr14	CG	SV	41556400	41556808	18	+	.	ID=2365;Type=deletion;Left=chr14:41556085-41556576;Right=chr14:41556400-41556808
chr14	CG	SV	42442661	42443413	44	.	.	ID=2364;Type=deletion;Left=chr14:42442661-42443102+;Right=chr14:42443073-42443413+;Distance=412;DiscordantMatePairAlignments=44;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=L1MCa:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr14	CG	SV	42442661	42443102	44	+	.	ID=2364;Type=deletion;Left=chr14:42442661-42443102;Right=chr14:42443073-42443413
chr14	CG	SV	42443073	42443413	44	+	.	ID=2364;Type=deletion;Left=chr14:42442661-42443102;Right=chr14:42443073-42443413
chr14	CG	SV	45647688	45648421	20	.	.	ID=2363;Type=deletion;Left=chr14:45647688-45648200+;Right=chr14:45648008-45648421+;Distance=320;DiscordantMatePairAlignments=20;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71105263 (chr14:45647688-45648008);Frequency=1.00
chr14	CG	SV	45647688	45648200	20	+	.	ID=2363;Type=deletion;Left=chr14:45647688-45648200;Right=chr14:45648008-45648421
chr14	CG	SV	45648008	45648421	20	+	.	ID=2363;Type=deletion;Left=chr14:45647688-45648200;Right=chr14:45648008-45648421
chr14	CG	SV	47393315	47395232	31	.	.	ID=241;Type=probable-inversion;Left=chr14:47393315-47393717-;Right=chr14:47395012-47395232+;Distance=1295;DiscordantMatePairAlignments=31;LeftRepeat=LTR33:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr14	CG	SV	47393315	47393717	31	-	.	ID=241;Type=probable-inversion;Left=chr14:47393315-47393717;Right=chr14:47395012-47395232
chr14	CG	SV	47395012	47395232	31	-	.	ID=241;Type=probable-inversion;Left=chr14:47393315-47393717;Right=chr14:47395012-47395232
chr14	CG	SV	47404005	47404792	14	.	.	ID=2362;Type=deletion;Left=chr14:47404005-47404493+;Right=chr14:47404320-47404792+;Distance=315;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs34655788 (chr14:47403991-47404306);Frequency=0.88
chr14	CG	SV	47404005	47404493	14	+	.	ID=2362;Type=deletion;Left=chr14:47404005-47404493;Right=chr14:47404320-47404792
chr14	CG	SV	47404320	47404792	14	+	.	ID=2362;Type=deletion;Left=chr14:47404005-47404493;Right=chr14:47404320-47404792
chr14	CG	SV	49261452	49262106	66	.	.	ID=997;Type=tandem-duplication;Left=chr14:49261452-49261790-;Right=chr14:49261790-49262106-;Distance=316;DiscordantMatePairAlignments=66;LeftRepeat=L3:LINE:CR1;RightRepeat=;LeftGenes=NM_172193:+;RightGenes=NM_172193:+;XRef=;Frequency=1.00
chr14	CG	SV	49261452	49261790	66	-	.	ID=997;Type=tandem-duplication;Left=chr14:49261452-49261790;Right=chr14:49261790-49262106
chr14	CG	SV	49261790	49262106	66	-	.	ID=997;Type=tandem-duplication;Left=chr14:49261452-49261790;Right=chr14:49261790-49262106
chr14	CG	SV	51448094	51449007	153	.	.	ID=2361;Type=deletion;Left=chr14:51448094-51448601+;Right=chr14:51448653-51449007+;Distance=559;DiscordantMatePairAlignments=153;LeftRepeat=AluJo:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_053064:+;RightGenes=NM_053064:+;XRef=rs72381763 (chr14:51448094-51448653);Frequency=0.12
chr14	CG	SV	51448094	51448601	153	+	.	ID=2361;Type=deletion;Left=chr14:51448094-51448601;Right=chr14:51448653-51449007
chr14	CG	SV	51448653	51449007	153	+	.	ID=2361;Type=deletion;Left=chr14:51448094-51448601;Right=chr14:51448653-51449007
chr14	CG	SV	53633816	53634578	11	.	.	ID=2360;Type=deletion;Left=chr14:53633816-53634231+;Right=chr14:53634150-53634578+;Distance=334;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;RightRepeat=L1MB8:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71105270 (chr14:53633816-53634150);Frequency=1.00
chr14	CG	SV	53633816	53634231	11	+	.	ID=2360;Type=deletion;Left=chr14:53633816-53634231;Right=chr14:53634150-53634578
chr14	CG	SV	53634150	53634578	11	+	.	ID=2360;Type=deletion;Left=chr14:53633816-53634231;Right=chr14:53634150-53634578
chr14	CG	SV	53780099	53783959	48	.	.	ID=2359;Type=deletion;Left=chr14:53780099-53780589+;Right=chr14:53783438-53783959+;Distance=3339;DiscordantMatePairAlignments=48;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72416677 (chr14:53780099-53783437);Frequency=0.47
chr14	CG	SV	53780099	53780589	48	+	.	ID=2359;Type=deletion;Left=chr14:53780099-53780589;Right=chr14:53783438-53783959
chr14	CG	SV	53783438	53783959	48	+	.	ID=2359;Type=deletion;Left=chr14:53780099-53780589;Right=chr14:53783438-53783959
chr14	CG	SV	56100976	56101477	15	.	.	ID=2358;Type=deletion;Left=chr14:56100976-56101436+;Right=chr14:56101329-56101477+;Distance=353;DiscordantMatePairAlignments=15;LeftRepeat=L1MEd:LINE:L1;RightRepeat=L1MEd:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	56100976	56101436	15	+	.	ID=2358;Type=deletion;Left=chr14:56100976-56101436;Right=chr14:56101329-56101477
chr14	CG	SV	56101329	56101477	15	+	.	ID=2358;Type=deletion;Left=chr14:56100976-56101436;Right=chr14:56101329-56101477
chr14	CG	SV	59411151	59413464	17	.	.	ID=2356;Type=deletion;Left=chr14:59411151-59411573+;Right=chr14:59412995-59413464+;Distance=1844;DiscordantMatePairAlignments=17;LeftRepeat=L1MA3:LINE:L1;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr14	CG	SV	59411151	59411573	17	+	.	ID=2356;Type=deletion;Left=chr14:59411151-59411573;Right=chr14:59412995-59413464
chr14	CG	SV	59412995	59413464	17	+	.	ID=2356;Type=deletion;Left=chr14:59411151-59411573;Right=chr14:59412995-59413464
chr14	CG	SV	64358650	64359299	20	.	.	ID=240;Type=distal-duplication;Left=chr14:64358650-64358740-;Right=chr14:64358845-64359299+;Distance=105;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=(TC)n:Simple_repeat:Simple_repeat;Tandem CA;LeftGenes=NM_000347:-;NM_001024858:-;RightGenes=NM_000347:-;NM_001024858:-;XRef=;Frequency=1.00
chr14	CG	SV	64358650	64358740	20	-	.	ID=240;Type=distal-duplication;Left=chr14:64358650-64358740;Right=chr14:64358845-64359299
chr14	CG	SV	64358845	64359299	20	-	.	ID=240;Type=distal-duplication;Left=chr14:64358650-64358740;Right=chr14:64358845-64359299
chr14	CG	SV	64358833	64358873	10	.	.	ID=4425;Type=distal-duplication;Left=chr14:64358833-64359210+;Right=chr14:64358770-64358873-;Distance=40;DiscordantMatePairAlignments=10;LeftRepeat=(TC)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=NM_000347:-;NM_001024858:-;RightGenes=NM_000347:-;NM_001024858:-;XRef=;Frequency=1.00
chr14	CG	SV	64358833	64359210	10	+	.	ID=4425;Type=distal-duplication;Left=chr14:64358833-64359210;Right=chr14:64358770-64358873
chr14	CG	SV	64358770	64358873	10	+	.	ID=4425;Type=distal-duplication;Left=chr14:64358833-64359210;Right=chr14:64358770-64358873
chr14	CG	SV	64430144	64433756	198	.	.	ID=2355;Type=deletion;Left=chr14:64430144-64430628+;Right=chr14:64433298-64433756+;Distance=3154;DiscordantMatePairAlignments=198;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71948642 (chr14:64430149-64433302);Frequency=1.00
chr14	CG	SV	64430144	64430628	198	+	.	ID=2355;Type=deletion;Left=chr14:64430144-64430628;Right=chr14:64433298-64433756
chr14	CG	SV	64433298	64433756	198	+	.	ID=2355;Type=deletion;Left=chr14:64430144-64430628;Right=chr14:64433298-64433756
chr14	CG	SV	65327928	65328163	16	.	.	ID=996;Type=tandem-duplication;Left=chr14:65327928-65328047-;Right=chr14:65328042-65328163-;Distance=116;DiscordantMatePairAlignments=16;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr14	CG	SV	65327928	65328047	16	-	.	ID=996;Type=tandem-duplication;Left=chr14:65327928-65328047;Right=chr14:65328042-65328163
chr14	CG	SV	65328042	65328163	16	-	.	ID=996;Type=tandem-duplication;Left=chr14:65327928-65328047;Right=chr14:65328042-65328163
chr14	CG	SV	67672811	67673953	60	.	.	ID=2354;Type=deletion;Left=chr14:67672811-67673081+;Right=chr14:67673511-67673953+;Distance=700;DiscordantMatePairAlignments=60;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_002877:+;NM_133509:+;NM_133510:+;RightGenes=NM_002877:+;NM_133509:+;NM_133510:+;XRef=rs67710758 (chr14:67672811-67673511);Frequency=0.94
chr14	CG	SV	67672811	67673081	60	+	.	ID=2354;Type=deletion;Left=chr14:67672811-67673081;Right=chr14:67673511-67673953
chr14	CG	SV	67673511	67673953	60	+	.	ID=2354;Type=deletion;Left=chr14:67672811-67673081;Right=chr14:67673511-67673953
chr14	CG	SV	69757592	69759552	64	.	.	ID=2353;Type=deletion;Left=chr14:69757592-69757967+;Right=chr14:69759213-69759552+;Distance=1621;DiscordantMatePairAlignments=64;LeftRepeat=L1M:LINE:L1;Self chain;RightRepeat=MER53:DNA:DNA;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr14	CG	SV	69757592	69757967	64	+	.	ID=2353;Type=deletion;Left=chr14:69757592-69757967;Right=chr14:69759213-69759552
chr14	CG	SV	69759213	69759552	64	+	.	ID=2353;Type=deletion;Left=chr14:69757592-69757967;Right=chr14:69759213-69759552
chr14	CG	SV	75883527	75884407	107	.	.	ID=2351;Type=deletion;Left=chr14:75883527-75884054+;Right=chr14:75883962-75884407+;Distance=435;DiscordantMatePairAlignments=107;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66763096 (chr14:75883526-75883961);Frequency=0.59
chr14	CG	SV	75883527	75884054	107	+	.	ID=2351;Type=deletion;Left=chr14:75883527-75884054;Right=chr14:75883962-75884407
chr14	CG	SV	75883962	75884407	107	+	.	ID=2351;Type=deletion;Left=chr14:75883527-75884054;Right=chr14:75883962-75884407
chr14	CG	SV	77897998	77898756	22	.	.	ID=2350;Type=deletion;Left=chr14:77897998-77898351+;Right=chr14:77898349-77898756+;Distance=351;DiscordantMatePairAlignments=22;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71105289 (chr14:77897998-77898349);Frequency=1.00
chr14	CG	SV	77897998	77898351	22	+	.	ID=2350;Type=deletion;Left=chr14:77897998-77898351;Right=chr14:77898349-77898756
chr14	CG	SV	77898349	77898756	22	+	.	ID=2350;Type=deletion;Left=chr14:77897998-77898351;Right=chr14:77898349-77898756
chr14	CG	SV	79176043	79185258	43	.	.	ID=2349;Type=deletion;Left=chr14:79176043-79176472+;Right=chr14:79184804-79185258+;Distance=8761;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=;LeftGenes=NM_001105250:+;NM_004796:+;NM_138970:+;RightGenes=NM_001105250:+;NM_004796:+;NM_138970:+;XRef=rs6145406 (chr14:79176041-79184802);Frequency=0.53
chr14	CG	SV	79176043	79176472	43	+	.	ID=2349;Type=deletion;Left=chr14:79176043-79176472;Right=chr14:79184804-79185258
chr14	CG	SV	79184804	79185258	43	+	.	ID=2349;Type=deletion;Left=chr14:79176043-79176472;Right=chr14:79184804-79185258
chr14	CG	SV	80538880	80539609	19	.	.	ID=2348;Type=deletion;Left=chr14:80538880-80539361+;Right=chr14:80539192-80539609+;Distance=312;DiscordantMatePairAlignments=19;LeftRepeat=L1HS:LINE:L1;Tandem T;RightRepeat=;LeftGenes=NM_000369:+;NM_001018036:+;NM_001142626:+;RightGenes=NM_000369:+;NM_001018036:+;NM_001142626:+;XRef=rs72176728 (chr14:80538868-80539180);Frequency=0.53
chr14	CG	SV	80538880	80539361	19	+	.	ID=2348;Type=deletion;Left=chr14:80538880-80539361;Right=chr14:80539192-80539609
chr14	CG	SV	80539192	80539609	19	+	.	ID=2348;Type=deletion;Left=chr14:80538880-80539361;Right=chr14:80539192-80539609
chr14	CG	SV	81568863	81573526	23	.	.	ID=2347;Type=deletion;Left=chr14:81568863-81569261+;Right=chr14:81573083-81573526+;Distance=4220;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr14	CG	SV	81568863	81569261	23	+	.	ID=2347;Type=deletion;Left=chr14:81568863-81569261;Right=chr14:81573083-81573526
chr14	CG	SV	81573083	81573526	23	+	.	ID=2347;Type=deletion;Left=chr14:81568863-81569261;Right=chr14:81573083-81573526
chr14	CG	SV	82705594	82706629	131	.	.	ID=2345;Type=deletion;Left=chr14:82705594-82706019+;Right=chr14:82706241-82706629+;Distance=647;DiscordantMatePairAlignments=131;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71765712 (chr14:82705589-82706236);Frequency=0.94
chr14	CG	SV	82705594	82706019	131	+	.	ID=2345;Type=deletion;Left=chr14:82705594-82706019;Right=chr14:82706241-82706629
chr14	CG	SV	82706241	82706629	131	+	.	ID=2345;Type=deletion;Left=chr14:82705594-82706019;Right=chr14:82706241-82706629
chr14	CG	SV	84208899	84209854	64	.	.	ID=2344;Type=deletion;Left=chr14:84208899-84209361+;Right=chr14:84209379-84209854+;Distance=480;DiscordantMatePairAlignments=64;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66883043 (chr14:84208898-84209378);Frequency=0.65
chr14	CG	SV	84208899	84209361	64	+	.	ID=2344;Type=deletion;Left=chr14:84208899-84209361;Right=chr14:84209379-84209854
chr14	CG	SV	84209379	84209854	64	+	.	ID=2344;Type=deletion;Left=chr14:84208899-84209361;Right=chr14:84209379-84209854
chr14	CG	SV	84484488	84484940	11	.	.	ID=995;Type=tandem-duplication;Left=chr14:84484488-84484729-;Right=chr14:84484722-84484940-;Distance=211;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr14	CG	SV	84484488	84484729	11	-	.	ID=995;Type=tandem-duplication;Left=chr14:84484488-84484729;Right=chr14:84484722-84484940
chr14	CG	SV	84484722	84484940	11	-	.	ID=995;Type=tandem-duplication;Left=chr14:84484488-84484729;Right=chr14:84484722-84484940
chr14	CG	SV	86927817	86928606	22	.	.	ID=2343;Type=deletion;Left=chr14:86927817-86928227+;Right=chr14:86928144-86928606+;Distance=327;DiscordantMatePairAlignments=22;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs33965396 (chr14:86927817-86928144);Frequency=1.00
chr14	CG	SV	86927817	86928227	22	+	.	ID=2343;Type=deletion;Left=chr14:86927817-86928227;Right=chr14:86928144-86928606
chr14	CG	SV	86928144	86928606	22	+	.	ID=2343;Type=deletion;Left=chr14:86927817-86928227;Right=chr14:86928144-86928606
chr14	CG	SV	92996048	92996165	16	.	.	ID=4423;Type=probable-inversion;Left=chr14:92996048-92996522+;Right=chr14:92996055-92996165-;Distance=117;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_020818:+;RightGenes=NM_020818:+;XRef=;Frequency=1.00
chr14	CG	SV	92996048	92996522	16	+	.	ID=4423;Type=probable-inversion;Left=chr14:92996048-92996522;Right=chr14:92996055-92996165
chr14	CG	SV	92996055	92996165	16	+	.	ID=4423;Type=probable-inversion;Left=chr14:92996048-92996522;Right=chr14:92996055-92996165
chr14	CG	SV	96245056	96245787	12	.	.	ID=2342;Type=deletion;Left=chr14:96245056-96245386+;Right=chr14:96245519-96245787+;Distance=463;DiscordantMatePairAlignments=12;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Tandem period 33;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Tandem period 33;LeftGenes=;RightGenes=;XRef=rs72339509 (chr14:96244957-96245272);Frequency=0.76
chr14	CG	SV	96245056	96245386	12	+	.	ID=2342;Type=deletion;Left=chr14:96245056-96245386;Right=chr14:96245519-96245787
chr14	CG	SV	96245519	96245787	12	+	.	ID=2342;Type=deletion;Left=chr14:96245056-96245386;Right=chr14:96245519-96245787
chr14	CG	SV	99914767	99915485	25	.	.	ID=2340;Type=deletion;Left=chr14:99914767-99915009+;Right=chr14:99915100-99915485+;Distance=333;DiscordantMatePairAlignments=25;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001161476:+;NM_024515:+;RightGenes=NM_001161476:+;NM_024515:+;XRef=rs67432898 (chr14:99914767-99915100);Frequency=0.94
chr14	CG	SV	99914767	99915009	25	+	.	ID=2340;Type=deletion;Left=chr14:99914767-99915009;Right=chr14:99915100-99915485
chr14	CG	SV	99915100	99915485	25	+	.	ID=2340;Type=deletion;Left=chr14:99914767-99915009;Right=chr14:99915100-99915485
chr14	CG	SV	100062716	100063032	14	.	.	ID=992;Type=tandem-duplication;Left=chr14:100062716-100062873-;Right=chr14:100062933-100063032-;Distance=159;DiscordantMatePairAlignments=14;LeftRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;RightRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;LeftGenes=NM_001161476:+;NM_024515:+;RightGenes=NM_001161476:+;NM_024515:+;XRef=;Frequency=1.00
chr14	CG	SV	100062716	100062873	14	-	.	ID=992;Type=tandem-duplication;Left=chr14:100062716-100062873;Right=chr14:100062933-100063032
chr14	CG	SV	100062933	100063032	14	-	.	ID=992;Type=tandem-duplication;Left=chr14:100062716-100062873;Right=chr14:100062933-100063032
chr14	CG	SV	101060629	101061479	30	.	.	ID=2339;Type=deletion;Left=chr14:101060629-101061048+;Right=chr14:101060965-101061479+;Distance=336;DiscordantMatePairAlignments=30;LeftRepeat=MADE1:DNA:Mariner;RightRepeat=MADE1:DNA:Mariner;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr14	CG	SV	101060629	101061048	30	+	.	ID=2339;Type=deletion;Left=chr14:101060629-101061048;Right=chr14:101060965-101061479
chr14	CG	SV	101060965	101061479	30	+	.	ID=2339;Type=deletion;Left=chr14:101060629-101061048;Right=chr14:101060965-101061479
chr14	CG	SV	103432418	103432879	75	.	.	ID=991;Type=tandem-duplication;Left=chr14:103432418-103432642-;Right=chr14:103432696-103432879-;Distance=237;DiscordantMatePairAlignments=75;LeftRepeat=Self chain;Tandem period 33;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	103432418	103432642	75	-	.	ID=991;Type=tandem-duplication;Left=chr14:103432418-103432642;Right=chr14:103432696-103432879
chr14	CG	SV	103432696	103432879	75	-	.	ID=991;Type=tandem-duplication;Left=chr14:103432418-103432642;Right=chr14:103432696-103432879
chr14	CG	SV	104343772	104344166	11	.	.	ID=990;Type=tandem-duplication;Left=chr14:104343772-104343963-;Right=chr14:104343999-104344166-;Distance=203;DiscordantMatePairAlignments=11;LeftRepeat=(CCA)n:Simple_repeat:Simple_repeat;Tandem period 12;Tandem period 15;Tandem period 18;RightRepeat=(CCA)n:Simple_repeat:Simple_repeat;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr14	CG	SV	104343772	104343963	11	-	.	ID=990;Type=tandem-duplication;Left=chr14:104343772-104343963;Right=chr14:104343999-104344166
chr14	CG	SV	104343999	104344166	11	-	.	ID=990;Type=tandem-duplication;Left=chr14:104343772-104343963;Right=chr14:104343999-104344166
chr14	CG	SV	104345008	104346035	73	.	.	ID=2337;Type=deletion;Left=chr14:104345008-104345366+;Right=chr14:104345844-104346035+;Distance=836;DiscordantMatePairAlignments=73;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;Tandem period 38;LeftGenes=;RightGenes=;XRef=rs71803557 (chr14:104344945-104345705);Frequency=0.94
chr14	CG	SV	104345008	104345366	73	+	.	ID=2337;Type=deletion;Left=chr14:104345008-104345366;Right=chr14:104345844-104346035
chr14	CG	SV	104345844	104346035	73	+	.	ID=2337;Type=deletion;Left=chr14:104345008-104345366;Right=chr14:104345844-104346035
chr14	CG	SV	104699679	104700105	32	.	.	ID=989;Type=tandem-duplication;Left=chr14:104699679-104699860-;Right=chr14:104699893-104700105-;Distance=245;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;Tandem period 17;Tandem period 33;RightRepeat=Self chain;LeftGenes=NM_002226:-;NM_145159:-;RightGenes=NM_002226:-;NM_145159:-;XRef=;Frequency=0.65
chr14	CG	SV	104699679	104699860	32	-	.	ID=989;Type=tandem-duplication;Left=chr14:104699679-104699860;Right=chr14:104699893-104700105
chr14	CG	SV	104699893	104700105	32	-	.	ID=989;Type=tandem-duplication;Left=chr14:104699679-104699860;Right=chr14:104699893-104700105
chr14	CG	SV	104809327	104810087	24	.	.	ID=2335;Type=deletion;Left=chr14:104809327-104809814+;Right=chr14:104809687-104810087+;Distance=360;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;Tandem period 72;RightRepeat=Self chain;LeftGenes=NM_001519:-;RightGenes=NM_001519:-;XRef=;Frequency=0.59
chr14	CG	SV	104809327	104809814	24	+	.	ID=2335;Type=deletion;Left=chr14:104809327-104809814;Right=chr14:104809687-104810087
chr14	CG	SV	104809687	104810087	24	+	.	ID=2335;Type=deletion;Left=chr14:104809327-104809814;Right=chr14:104809687-104810087
chr14	CG	SV	105119893	105120363	11	.	.	ID=987;Type=tandem-duplication;Left=chr14:105119893-105120046-;Right=chr14:105120139-105120363-;Distance=317;DiscordantMatePairAlignments=11;LeftRepeat=SegDup;Self chain;Tandem period 20;RightRepeat=SegDup;Self chain;Tandem period 20;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	105119893	105120046	11	-	.	ID=987;Type=tandem-duplication;Left=chr14:105119893-105120046;Right=chr14:105120139-105120363
chr14	CG	SV	105120139	105120363	11	-	.	ID=987;Type=tandem-duplication;Left=chr14:105119893-105120046;Right=chr14:105120139-105120363
chr14	CG	SV	106003685	106246350	12	.	.	ID=2332;Type=deletion;Left=chr14:106003685-106003891+;Right=chr14:106245975-106246350+;Distance=242290;DiscordantMatePairAlignments=12;LeftRepeat=MER89-int:LTR:ERV1;SegDup;Self chain;RightRepeat=LTR52-int:LTR:ERVL;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr14	CG	SV	106003685	106003891	12	+	.	ID=2332;Type=deletion;Left=chr14:106003685-106003891;Right=chr14:106245975-106246350
chr14	CG	SV	106245975	106246350	12	+	.	ID=2332;Type=deletion;Left=chr14:106003685-106003891;Right=chr14:106245975-106246350
chr14	CG	SV	106108468	106334620	18	.	.	ID=982;Type=tandem-duplication;Left=chr14:106108468-106108972-;Right=chr14:106334111-106334620-;Distance=225648;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr14	CG	SV	106108468	106108972	18	-	.	ID=982;Type=tandem-duplication;Left=chr14:106108468-106108972;Right=chr14:106334111-106334620
chr14	CG	SV	106334111	106334620	18	-	.	ID=982;Type=tandem-duplication;Left=chr14:106108468-106108972;Right=chr14:106334111-106334620
chr14	CG	SV	106232606	106232836	103	.	.	ID=983;Type=tandem-duplication;Left=chr14:106232606-106232718-;Right=chr14:106232715-106232836-;Distance=118;DiscordantMatePairAlignments=103;LeftRepeat=Self chain;Tandem period 59;RightRepeat=Self chain;Tandem period 59;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	106232606	106232718	103	-	.	ID=983;Type=tandem-duplication;Left=chr14:106232606-106232718;Right=chr14:106232715-106232836
chr14	CG	SV	106232715	106232836	103	-	.	ID=983;Type=tandem-duplication;Left=chr14:106232606-106232718;Right=chr14:106232715-106232836
chr15	CG	SV	22390426	22391203	26	.	.	ID=2328;Type=deletion;Left=chr15:22390426-22390834+;Right=chr15:22390748-22391203+;Distance=322;DiscordantMatePairAlignments=26;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=MSTC-int:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=rs71114009 (chr15:22390410-22390732);Frequency=0.47
chr15	CG	SV	22390426	22390834	26	+	.	ID=2328;Type=deletion;Left=chr15:22390426-22390834;Right=chr15:22390748-22391203
chr15	CG	SV	22390748	22391203	26	+	.	ID=2328;Type=deletion;Left=chr15:22390426-22390834;Right=chr15:22390748-22391203
chr15	CG	SV	27198774	27199710	81	.	.	ID=2325;Type=deletion;Left=chr15:27198774-27199206+;Right=chr15:27199196-27199710+;Distance=422;DiscordantMatePairAlignments=81;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=L1MEc:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs67495753 (chr15:27198766-27199188);Frequency=1.00
chr15	CG	SV	27198774	27199206	81	+	.	ID=2325;Type=deletion;Left=chr15:27198774-27199206;Right=chr15:27199196-27199710
chr15	CG	SV	27199196	27199710	81	+	.	ID=2325;Type=deletion;Left=chr15:27198774-27199206;Right=chr15:27199196-27199710
chr15	CG	SV	32796325	32797112	37	.	.	ID=2324;Type=deletion;Left=chr15:32796325-32796784+;Right=chr15:32796660-32797112+;Distance=335;DiscordantMatePairAlignments=37;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67980090 (chr15:32796308-32796643);Frequency=1.00
chr15	CG	SV	32796325	32796784	37	+	.	ID=2324;Type=deletion;Left=chr15:32796325-32796784;Right=chr15:32796660-32797112
chr15	CG	SV	32796660	32797112	37	+	.	ID=2324;Type=deletion;Left=chr15:32796325-32796784;Right=chr15:32796660-32797112
chr15	CG	SV	37054308	37055084	34	.	.	ID=2322;Type=deletion;Left=chr15:37054308-37054707+;Right=chr15:37054662-37055084+;Distance=354;DiscordantMatePairAlignments=34;LeftRepeat=(TTA)n:Simple_repeat:Simple_repeat;Tandem TTA;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71114025 (chr15:37054308-37054662);Frequency=0.94
chr15	CG	SV	37054308	37054707	34	+	.	ID=2322;Type=deletion;Left=chr15:37054308-37054707;Right=chr15:37054662-37055084
chr15	CG	SV	37054662	37055084	34	+	.	ID=2322;Type=deletion;Left=chr15:37054308-37054707;Right=chr15:37054662-37055084
chr15	CG	SV	38609286	38611195	47	.	.	ID=2320;Type=deletion;Left=chr15:38609286-38609774+;Right=chr15:38610947-38611195+;Distance=1661;DiscordantMatePairAlignments=47;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr15	CG	SV	38609286	38609774	47	+	.	ID=2320;Type=deletion;Left=chr15:38609286-38609774;Right=chr15:38610947-38611195
chr15	CG	SV	38610947	38611195	47	+	.	ID=2320;Type=deletion;Left=chr15:38609286-38609774;Right=chr15:38610947-38611195
chr15	CG	SV	39653307	39657805	20	.	.	ID=2308;Type=deletion;Left=chr15:39653307-39653815+;Right=chr15:39657377-39657805+;Distance=4070;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_006293:+;RightGenes=NM_006293:+;XRef=rs71638058 (chr15:39653305-39657375);Frequency=0.24
chr15	CG	SV	39653307	39653815	20	+	.	ID=2308;Type=deletion;Left=chr15:39653307-39653815;Right=chr15:39657377-39657805
chr15	CG	SV	39657377	39657805	20	+	.	ID=2308;Type=deletion;Left=chr15:39653307-39653815;Right=chr15:39657377-39657805
chr15	CG	SV	41447730	41448426	17	.	.	ID=2307;Type=deletion;Left=chr15:41447730-41448198+;Right=chr15:41448056-41448426+;Distance=326;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_152455:-;RightGenes=NM_152455:-;XRef=rs67941074 (chr15:41447719-41448045);Frequency=0.88
chr15	CG	SV	41447730	41448198	17	+	.	ID=2307;Type=deletion;Left=chr15:41447730-41448198;Right=chr15:41448056-41448426
chr15	CG	SV	41448056	41448426	17	+	.	ID=2307;Type=deletion;Left=chr15:41447730-41448198;Right=chr15:41448056-41448426
chr15	CG	SV	43855272	43856043	41	.	.	ID=2305;Type=deletion;Left=chr15:43855272-43855705+;Right=chr15:43855622-43856043+;Distance=350;DiscordantMatePairAlignments=41;LeftRepeat=L1MEa:LINE:L1;Tandem T;RightRepeat=L1MEa:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67712655 (chr15:43855272-43855622);Frequency=1.00
chr15	CG	SV	43855272	43855705	41	+	.	ID=2305;Type=deletion;Left=chr15:43855272-43855705;Right=chr15:43855622-43856043
chr15	CG	SV	43855622	43856043	41	+	.	ID=2305;Type=deletion;Left=chr15:43855272-43855705;Right=chr15:43855622-43856043
chr15	CG	SV	50312486	50313130	15	.	.	ID=2302;Type=deletion;Left=chr15:50312486-50312969+;Right=chr15:50312819-50313130+;Distance=333;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_018728:-;RightGenes=NM_018728:-;XRef=rs67366983 (chr15:50312475-50312808);Frequency=1.00
chr15	CG	SV	50312486	50312969	15	+	.	ID=2302;Type=deletion;Left=chr15:50312486-50312969;Right=chr15:50312819-50313130
chr15	CG	SV	50312819	50313130	15	+	.	ID=2302;Type=deletion;Left=chr15:50312486-50312969;Right=chr15:50312819-50313130
chr15	CG	SV	53005508	53012152	28	.	.	ID=2301;Type=deletion;Left=chr15:53005508-53005920+;Right=chr15:53011717-53012152+;Distance=6209;DiscordantMatePairAlignments=28;LeftRepeat=L1M1:LINE:L1;RightRepeat=L1ME3:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71114035 (chr15:53005522-53011731);Frequency=1.00
chr15	CG	SV	53005508	53005920	28	+	.	ID=2301;Type=deletion;Left=chr15:53005508-53005920;Right=chr15:53011717-53012152
chr15	CG	SV	53011717	53012152	28	+	.	ID=2301;Type=deletion;Left=chr15:53005508-53005920;Right=chr15:53011717-53012152
chr15	CG	SV	57500190	57500939	26	.	.	ID=2299;Type=deletion;Left=chr15:57500190-57500597+;Right=chr15:57500521-57500939+;Distance=331;DiscordantMatePairAlignments=26;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67321160 (chr15:57500178-57500509);Frequency=1.00
chr15	CG	SV	57500190	57500597	26	+	.	ID=2299;Type=deletion;Left=chr15:57500190-57500597;Right=chr15:57500521-57500939
chr15	CG	SV	57500521	57500939	26	+	.	ID=2299;Type=deletion;Left=chr15:57500190-57500597;Right=chr15:57500521-57500939
chr15	CG	SV	60972654	60972783	22	.	.	ID=977;Type=tandem-duplication;Left=chr15:60972654-60972730-;Right=chr15:60972697-60972783-;Distance=53;DiscordantMatePairAlignments=22;LeftRepeat=L1MEe:LINE:L1;Self chain;Tandem period 24;RightRepeat=Self chain;Tandem period 20;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr15	CG	SV	60972654	60972730	22	-	.	ID=977;Type=tandem-duplication;Left=chr15:60972654-60972730;Right=chr15:60972697-60972783
chr15	CG	SV	60972697	60972783	22	-	.	ID=977;Type=tandem-duplication;Left=chr15:60972654-60972730;Right=chr15:60972697-60972783
chr15	CG	SV	65321477	65322260	27	.	.	ID=2295;Type=deletion;Left=chr15:65321477-65321947+;Right=chr15:65321863-65322260+;Distance=386;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_024666:-;RightGenes=NM_024666:-;XRef=rs72322625 (chr15:65321533-65321867);Frequency=0.41
chr15	CG	SV	65321477	65321947	27	+	.	ID=2295;Type=deletion;Left=chr15:65321477-65321947;Right=chr15:65321863-65322260
chr15	CG	SV	65321863	65322260	27	+	.	ID=2295;Type=deletion;Left=chr15:65321477-65321947;Right=chr15:65321863-65322260
chr15	CG	SV	66213061	66216416	163	.	.	ID=2294;Type=deletion;Left=chr15:66213061-66213519+;Right=chr15:66215986-66216416+;Distance=2925;DiscordantMatePairAlignments=163;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_016166:+;RightGenes=NM_016166:+;XRef=rs67082670 (chr15:66213074-66215999);Frequency=1.00
chr15	CG	SV	66213061	66213519	163	+	.	ID=2294;Type=deletion;Left=chr15:66213061-66213519;Right=chr15:66215986-66216416
chr15	CG	SV	66215986	66216416	163	+	.	ID=2294;Type=deletion;Left=chr15:66213061-66213519;Right=chr15:66215986-66216416
chr15	CG	SV	69495663	69501186	19	.	.	ID=2290;Type=deletion;Left=chr15:69495663-69495869+;Right=chr15:69500744-69501186+;Distance=5081;DiscordantMatePairAlignments=19;LeftRepeat=L1MA2:LINE:L1;Self chain;RightRepeat=L1M1:LINE:L1;Self chain;LeftGenes=NM_024817:+;RightGenes=NM_024817:+;XRef=;Frequency=0.47
chr15	CG	SV	69495663	69495869	19	+	.	ID=2290;Type=deletion;Left=chr15:69495663-69495869;Right=chr15:69500744-69501186
chr15	CG	SV	69500744	69501186	19	+	.	ID=2290;Type=deletion;Left=chr15:69495663-69495869;Right=chr15:69500744-69501186
chr15	CG	SV	69672530	69673107	18	.	.	ID=2288;Type=deletion;Left=chr15:69672530-69673023+;Right=chr15:69672868-69673107+;Distance=338;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_024817:+;RightGenes=NM_024817:+;XRef=rs68136845 (chr15:69672535-69672873);Frequency=1.00
chr15	CG	SV	69672530	69673023	18	+	.	ID=2288;Type=deletion;Left=chr15:69672530-69673023;Right=chr15:69672868-69673107
chr15	CG	SV	69672868	69673107	18	+	.	ID=2288;Type=deletion;Left=chr15:69672530-69673023;Right=chr15:69672868-69673107
chr15	CG	SV	69804361	69805028	52	.	.	ID=2287;Type=deletion;Left=chr15:69804361-69804773+;Right=chr15:69804721-69805028+;Distance=360;DiscordantMatePairAlignments=52;LeftRepeat=L2:LINE:L2;Self chain;Tandem period 180;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_024817:+;RightGenes=NM_024817:+;XRef=rs71114044 (chr15:69804361-69804721);Frequency=1.00
chr15	CG	SV	69804361	69804773	52	+	.	ID=2287;Type=deletion;Left=chr15:69804361-69804773;Right=chr15:69804721-69805028
chr15	CG	SV	69804721	69805028	52	+	.	ID=2287;Type=deletion;Left=chr15:69804361-69804773;Right=chr15:69804721-69805028
chr15	CG	SV	75697927	75698774	96	.	.	ID=2285;Type=deletion;Left=chr15:75697927-75698424+;Right=chr15:75698301-75698774+;Distance=374;DiscordantMatePairAlignments=96;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_032808:-;RightGenes=NM_032808:-;XRef=rs66895003 (chr15:75697927-75698301);Frequency=1.00
chr15	CG	SV	75697927	75698424	96	+	.	ID=2285;Type=deletion;Left=chr15:75697927-75698424;Right=chr15:75698301-75698774
chr15	CG	SV	75698301	75698774	96	+	.	ID=2285;Type=deletion;Left=chr15:75697927-75698424;Right=chr15:75698301-75698774
chr15	CG	SV	75778351	75779158	16	.	.	ID=975;Type=tandem-duplication;Left=chr15:75778351-75778721-;Right=chr15:75778981-75779158-;Distance=437;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 31;Tandem period 64;RightRepeat=Self chain;Tandem period 31;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr15	CG	SV	75778351	75778721	16	-	.	ID=975;Type=tandem-duplication;Left=chr15:75778351-75778721;Right=chr15:75778981-75779158
chr15	CG	SV	75778981	75779158	16	-	.	ID=975;Type=tandem-duplication;Left=chr15:75778351-75778721;Right=chr15:75778981-75779158
chr15	CG	SV	77592039	77592549	16	.	.	ID=2284;Type=deletion;Left=chr15:77592039-77592573+;Right=chr15:77592398-77592549+;Distance=359;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 359;RightRepeat=Self chain;Tandem period 359;LeftGenes=;RightGenes=;XRef=rs6145645 (chr15:77591688-77592047);Frequency=0.76
chr15	CG	SV	77592039	77592573	16	+	.	ID=2284;Type=deletion;Left=chr15:77592039-77592573;Right=chr15:77592398-77592549
chr15	CG	SV	77592398	77592549	16	+	.	ID=2284;Type=deletion;Left=chr15:77592039-77592573;Right=chr15:77592398-77592549
chr15	CG	SV	77678911	77679696	19	.	.	ID=2283;Type=deletion;Left=chr15:77678911-77679420+;Right=chr15:77679236-77679696+;Distance=325;DiscordantMatePairAlignments=19;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71796945 (chr15:77678911-77679232);Frequency=0.59
chr15	CG	SV	77678911	77679420	19	+	.	ID=2283;Type=deletion;Left=chr15:77678911-77679420;Right=chr15:77679236-77679696
chr15	CG	SV	77679236	77679696	19	+	.	ID=2283;Type=deletion;Left=chr15:77678911-77679420;Right=chr15:77679236-77679696
chr15	CG	SV	81564887	81565667	31	.	.	ID=2280;Type=deletion;Left=chr15:81564887-81565246+;Right=chr15:81565216-81565667+;Distance=329;DiscordantMatePairAlignments=31;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72179054 (chr15:81564887-81565216);Frequency=0.65
chr15	CG	SV	81564887	81565246	31	+	.	ID=2280;Type=deletion;Left=chr15:81564887-81565246;Right=chr15:81565216-81565667
chr15	CG	SV	81565216	81565667	31	+	.	ID=2280;Type=deletion;Left=chr15:81564887-81565246;Right=chr15:81565216-81565667
chr15	CG	SV	85501135	85501859	76	.	.	ID=2279;Type=deletion;Left=chr15:85501135-85501552+;Right=chr15:85501575-85501859+;Distance=440;DiscordantMatePairAlignments=76;LeftRepeat=(TTCC)n:Simple_repeat:Simple_repeat;Tandem TTCC;Tandem period 28;Tandem period 43;Tandem period 71;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem period 28;Tandem period 43;Tandem period 71;LeftGenes=;RightGenes=;XRef=rs67982659 (chr15:85501027-85501436);Frequency=0.71
chr15	CG	SV	85501135	85501552	76	+	.	ID=2279;Type=deletion;Left=chr15:85501135-85501552;Right=chr15:85501575-85501859
chr15	CG	SV	85501575	85501859	76	+	.	ID=2279;Type=deletion;Left=chr15:85501135-85501552;Right=chr15:85501575-85501859
chr15	CG	SV	89782584	89790588	17	.	.	ID=2277;Type=complex;Left=chr15:89782584-89783088+;Right=chr15:89790272-89790588+;Distance=7688;DiscordantMatePairAlignments=17;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr15	CG	SV	89782584	89783088	17	+	.	ID=2277;Type=complex;Left=chr15:89782584-89783088;Right=chr15:89790272-89790588
chr15	CG	SV	89790272	89790588	17	+	.	ID=2277;Type=complex;Left=chr15:89782584-89783088;Right=chr15:89790272-89790588
chr15	CG	SV	89784082	89790621	41	.	.	ID=974;Type=complex;Left=chr15:89784082-89784464-;Right=chr15:89790282-89790621-;Distance=6157;DiscordantMatePairAlignments=41;LeftRepeat=L1MEb:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr15	CG	SV	89784082	89784464	41	-	.	ID=974;Type=complex;Left=chr15:89784082-89784464;Right=chr15:89790282-89790621
chr15	CG	SV	89790282	89790621	41	-	.	ID=974;Type=complex;Left=chr15:89784082-89784464;Right=chr15:89790282-89790621
chr15	CG	SV	91316802	91317583	39	.	.	ID=2275;Type=deletion;Left=chr15:91316802-91317173+;Right=chr15:91317115-91317583+;Distance=313;DiscordantMatePairAlignments=39;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001271:+;RightGenes=NM_001271:+;XRef=rs67178621 (chr15:91316802-91317115);Frequency=0.94
chr15	CG	SV	91316802	91317173	39	+	.	ID=2275;Type=deletion;Left=chr15:91316802-91317173;Right=chr15:91317115-91317583
chr15	CG	SV	91317115	91317583	39	+	.	ID=2275;Type=deletion;Left=chr15:91316802-91317173;Right=chr15:91317115-91317583
chr15	CG	SV	96523521	96524369	10	.	.	ID=2273;Type=deletion;Left=chr15:96523521-96523925+;Right=chr15:96523940-96524369+;Distance=419;DiscordantMatePairAlignments=10;LeftRepeat=MER52A:LTR:ERV1;Tandem period 54;RightRepeat=MER52A:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs71114056 (chr15:96523627-96523955);Frequency=0.82
chr15	CG	SV	96523521	96523925	10	+	.	ID=2273;Type=deletion;Left=chr15:96523521-96523925;Right=chr15:96523940-96524369
chr15	CG	SV	96523940	96524369	10	+	.	ID=2273;Type=deletion;Left=chr15:96523521-96523925;Right=chr15:96523940-96524369
chr15	CG	SV	96634540	96635445	35	.	.	ID=2272;Type=deletion;Left=chr15:96634540-96634765+;Right=chr15:96634949-96635445+;Distance=409;DiscordantMatePairAlignments=35;LeftRepeat=;RightRepeat=L1PA17:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr15	CG	SV	96634540	96634765	35	+	.	ID=2272;Type=deletion;Left=chr15:96634540-96634765;Right=chr15:96634949-96635445
chr15	CG	SV	96634949	96635445	35	+	.	ID=2272;Type=deletion;Left=chr15:96634540-96634765;Right=chr15:96634949-96635445
chr15	CG	SV	96717592	96718583	37	.	.	ID=2271;Type=deletion;Left=chr15:96717592-96717850+;Right=chr15:96718158-96718583+;Distance=566;DiscordantMatePairAlignments=37;LeftRepeat=L1MC:LINE:L1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67424211 (chr15:96717594-96718160);Frequency=0.71
chr15	CG	SV	96717592	96717850	37	+	.	ID=2271;Type=deletion;Left=chr15:96717592-96717850;Right=chr15:96718158-96718583
chr15	CG	SV	96718158	96718583	37	+	.	ID=2271;Type=deletion;Left=chr15:96717592-96717850;Right=chr15:96718158-96718583
chr15	CG	SV	97392075	97393449	10	.	.	ID=2266;Type=deletion;Left=chr15:97392075-97392495+;Right=chr15:97393201-97393449+;Distance=1126;DiscordantMatePairAlignments=10;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71114057 (chr15:97392034-97393161);Frequency=0.59
chr15	CG	SV	97392075	97392495	10	+	.	ID=2266;Type=deletion;Left=chr15:97392075-97392495;Right=chr15:97393201-97393449
chr15	CG	SV	97393201	97393449	10	+	.	ID=2266;Type=deletion;Left=chr15:97392075-97392495;Right=chr15:97393201-97393449
chr15	CG	SV	98869284	98870113	55	.	.	ID=2265;Type=deletion;Left=chr15:98869284-98869551+;Right=chr15:98869849-98870113+;Distance=565;DiscordantMatePairAlignments=55;LeftRepeat=Self chain;Tandem period 63;RightRepeat=Self chain;Tandem period 63;LeftGenes=NM_178842:-;RightGenes=NM_178842:-;XRef=rs72451132 (chr15:98869262-98869701);Frequency=1.00
chr15	CG	SV	98869284	98869551	55	+	.	ID=2265;Type=deletion;Left=chr15:98869284-98869551;Right=chr15:98869849-98870113
chr15	CG	SV	98869849	98870113	55	+	.	ID=2265;Type=deletion;Left=chr15:98869284-98869551;Right=chr15:98869849-98870113
chr15	CG	SV	99067867	99068270	13	.	.	ID=969;Type=tandem-duplication;Left=chr15:99067867-99068061-;Right=chr15:99068092-99068270-;Distance=209;DiscordantMatePairAlignments=13;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGGAGG;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr15	CG	SV	99067867	99068061	13	-	.	ID=969;Type=tandem-duplication;Left=chr15:99067867-99068061;Right=chr15:99068092-99068270
chr15	CG	SV	99068092	99068270	13	-	.	ID=969;Type=tandem-duplication;Left=chr15:99067867-99068061;Right=chr15:99068092-99068270
chr15	CG	SV	99270604	99271290	15	.	.	ID=2264;Type=deletion;Left=chr15:99270604-99271084+;Right=chr15:99270913-99271290+;Distance=309;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;RightRepeat=MER5A:DNA:MER1_type;LeftGenes=NM_000693:+;RightGenes=NM_000693:+;XRef=rs10523872 (chr15:99270604-99270913);Frequency=0.76
chr15	CG	SV	99270604	99271084	15	+	.	ID=2264;Type=deletion;Left=chr15:99270604-99271084;Right=chr15:99270913-99271290
chr15	CG	SV	99270913	99271290	15	+	.	ID=2264;Type=deletion;Left=chr15:99270604-99271084;Right=chr15:99270913-99271290
chr15	CG	SV	99844133	100131539	107	.	.	ID=968;Type=tandem-duplication;Left=chr15:99844133-99844519-;Right=chr15:100131158-100131539-;Distance=287020;DiscordantMatePairAlignments=107;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=NM_002570:-;NM_138319:-;NM_138320:-;NM_138321:-;NM_138322:-;NM_138323:-;NM_138324:-;NM_138325:-;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	99844133	99844519	107	-	.	ID=968;Type=tandem-duplication;Left=chr15:99844133-99844519;Right=chr15:100131158-100131539
chr15	CG	SV	100131158	100131539	107	-	.	ID=968;Type=tandem-duplication;Left=chr15:99844133-99844519;Right=chr15:100131158-100131539
chr15	CG	SV	99968989	99983555	90	.	.	ID=4416;Type=probable-inversion;Left=chr15:99968989-99969491+;Right=chr15:99983163-99983555-;Distance=14566;DiscordantMatePairAlignments=90;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	99968989	99969491	90	+	.	ID=4416;Type=probable-inversion;Left=chr15:99968989-99969491;Right=chr15:99983163-99983555
chr15	CG	SV	99983163	99983555	90	+	.	ID=4416;Type=probable-inversion;Left=chr15:99968989-99969491;Right=chr15:99983163-99983555
chr15	CG	SV	99981983	100040098	125	.	.	ID=234;Type=probable-inversion;Left=chr15:99981983-99982424-;Right=chr15:100039685-100040098+;Distance=57261;DiscordantMatePairAlignments=125;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=NM_152334:-;XRef=;Frequency=0.00
chr15	CG	SV	99981983	99982424	125	-	.	ID=234;Type=probable-inversion;Left=chr15:99981983-99982424;Right=chr15:100039685-100040098
chr15	CG	SV	100039685	100040098	125	-	.	ID=234;Type=probable-inversion;Left=chr15:99981983-99982424;Right=chr15:100039685-100040098
chr16	CG	SV	151991	160930	13	.	.	ID=2263;Type=deletion;Left=chr16:151991-152468+;Right=chr16:160588-160930+;Distance=8597;DiscordantMatePairAlignments=13;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	151991	152468	13	+	.	ID=2263;Type=deletion;Left=chr16:151991-152468;Right=chr16:160588-160930
chr16	CG	SV	160588	160930	13	+	.	ID=2263;Type=deletion;Left=chr16:151991-152468;Right=chr16:160588-160930
chr16	CG	SV	736394	736943	13	.	.	ID=2262;Type=deletion;Left=chr16:736394-736813+;Right=chr16:736745-736943+;Distance=351;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 175;Tandem period 44;RightRepeat=Self chain;Tandem period 44;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	736394	736813	13	+	.	ID=2262;Type=deletion;Left=chr16:736394-736813;Right=chr16:736745-736943
chr16	CG	SV	736745	736943	13	+	.	ID=2262;Type=deletion;Left=chr16:736394-736813;Right=chr16:736745-736943
chr16	CG	SV	1362942	1364511	128	.	.	ID=2261;Type=deletion;Left=chr16:1362942-1363378+;Right=chr16:1364205-1364511+;Distance=1263;DiscordantMatePairAlignments=128;LeftRepeat=Self chain;Tandem period 55;RightRepeat=Self chain;Tandem period 55;LeftGenes=NM_023076:-;RightGenes=NM_023076:-;XRef=rs72390176 (chr16:1363011-1364219);Frequency=1.00
chr16	CG	SV	1362942	1363378	128	+	.	ID=2261;Type=deletion;Left=chr16:1362942-1363378;Right=chr16:1364205-1364511
chr16	CG	SV	1364205	1364511	128	+	.	ID=2261;Type=deletion;Left=chr16:1362942-1363378;Right=chr16:1364205-1364511
chr16	CG	SV	11591265	11593016	13	.	.	ID=2259;Type=deletion;Left=chr16:11591265-11591724+;Right=chr16:11592826-11593016+;Distance=1561;DiscordantMatePairAlignments=13;LeftRepeat=AluJo:SINE:Alu;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr16	CG	SV	11591265	11591724	13	+	.	ID=2259;Type=deletion;Left=chr16:11591265-11591724;Right=chr16:11592826-11593016
chr16	CG	SV	11592826	11593016	13	+	.	ID=2259;Type=deletion;Left=chr16:11591265-11591724;Right=chr16:11592826-11593016
chr16	CG	SV	13201968	13204488	77	.	.	ID=2257;Type=deletion;Left=chr16:13201968-13202395+;Right=chr16:13203997-13204488+;Distance=2029;DiscordantMatePairAlignments=77;LeftRepeat=;RightRepeat=L1MC4a:LINE:L1;LeftGenes=NM_001145204:+;RightGenes=NM_001145204:+;XRef=;Frequency=0.59
chr16	CG	SV	13201968	13202395	77	+	.	ID=2257;Type=deletion;Left=chr16:13201968-13202395;Right=chr16:13203997-13204488
chr16	CG	SV	13203997	13204488	77	+	.	ID=2257;Type=deletion;Left=chr16:13201968-13202395;Right=chr16:13203997-13204488
chr16	CG	SV	13681357	13681971	13	.	.	ID=966;Type=tandem-duplication;Left=chr16:13681357-13681632-;Right=chr16:13681623-13681971-;Distance=339;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr16	CG	SV	13681357	13681632	13	-	.	ID=966;Type=tandem-duplication;Left=chr16:13681357-13681632;Right=chr16:13681623-13681971
chr16	CG	SV	13681623	13681971	13	-	.	ID=966;Type=tandem-duplication;Left=chr16:13681357-13681632;Right=chr16:13681623-13681971
chr16	CG	SV	14360737	14361483	30	.	.	ID=2256;Type=deletion;Left=chr16:14360737-14361273+;Right=chr16:14361155-14361483+;Distance=418;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=rs72460419 (chr16:14360736-14361154);Frequency=0.00
chr16	CG	SV	14360737	14361273	30	+	.	ID=2256;Type=deletion;Left=chr16:14360737-14361273;Right=chr16:14361155-14361483
chr16	CG	SV	14361155	14361483	30	+	.	ID=2256;Type=deletion;Left=chr16:14360737-14361273;Right=chr16:14361155-14361483
chr16	CG	SV	14488263	33858148	181	.	.	ID=233;Type=complex;Left=chr16:14488263-14488376-;Right=chr16:33857677-33858148+;Distance=19369301;DiscordantMatePairAlignments=181;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=NM_001134477:-;NM_002582:-;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	14488263	14488376	181	-	.	ID=233;Type=complex;Left=chr16:14488263-14488376;Right=chr16:33857677-33858148
chr16	CG	SV	33857677	33858148	181	-	.	ID=233;Type=complex;Left=chr16:14488263-14488376;Right=chr16:33857677-33858148
chr16	CG	SV	14488479	33857186	12	.	.	ID=4414;Type=complex;Left=chr16:14488479-14488570+;Right=chr16:33856809-33857186-;Distance=19368707;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=NM_001134477:-;NM_002582:-;RightGenes=;XRef=;Frequency=0.53
chr16	CG	SV	14488479	14488570	12	+	.	ID=4414;Type=complex;Left=chr16:14488479-14488570;Right=chr16:33856809-33857186
chr16	CG	SV	33856809	33857186	12	+	.	ID=4414;Type=complex;Left=chr16:14488479-14488570;Right=chr16:33856809-33857186
chr16	CG	SV	16841868	16848368	118	.	.	ID=2255;Type=deletion;Left=chr16:16841868-16842330+;Right=chr16:16847919-16848368+;Distance=6051;DiscordantMatePairAlignments=118;LeftRepeat=Self chain;RightRepeat=L1ME3B:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71962966 (chr16:16841879-16847930);Frequency=0.94
chr16	CG	SV	16841868	16842330	118	+	.	ID=2255;Type=deletion;Left=chr16:16841868-16842330;Right=chr16:16847919-16848368
chr16	CG	SV	16847919	16848368	118	+	.	ID=2255;Type=deletion;Left=chr16:16841868-16842330;Right=chr16:16847919-16848368
chr16	CG	SV	18740028	18746267	28	.	.	ID=2254;Type=deletion;Left=chr16:18740028-18740425+;Right=chr16:18745880-18746267+;Distance=5852;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_015092:-;RightGenes=NM_015092:-;XRef=rs67687398 (chr16:18740025-18745877);Frequency=0.88
chr16	CG	SV	18740028	18740425	28	+	.	ID=2254;Type=deletion;Left=chr16:18740028-18740425;Right=chr16:18745880-18746267
chr16	CG	SV	18745880	18746267	28	+	.	ID=2254;Type=deletion;Left=chr16:18740028-18740425;Right=chr16:18745880-18746267
chr16	CG	SV	19137943	19138644	31	.	.	ID=2253;Type=deletion;Left=chr16:19137943-19138424+;Right=chr16:19138295-19138644+;Distance=352;DiscordantMatePairAlignments=31;LeftRepeat=AluYb9:SINE:Alu;Self chain;RightRepeat=L1MC4:LINE:L1;Self chain;LeftGenes=NM_016524:+;RightGenes=NM_016524:+;XRef=rs10529565 (chr16:19137943-19138295);Frequency=0.94
chr16	CG	SV	19137943	19138424	31	+	.	ID=2253;Type=deletion;Left=chr16:19137943-19138424;Right=chr16:19138295-19138644
chr16	CG	SV	19138295	19138644	31	+	.	ID=2253;Type=deletion;Left=chr16:19137943-19138424;Right=chr16:19138295-19138644
chr16	CG	SV	20686058	20686738	15	.	.	ID=2250;Type=deletion;Left=chr16:20686058-20686544+;Right=chr16:20686378-20686738+;Distance=320;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_005622:+;NM_202000:+;RightGenes=NM_005622:+;NM_202000:+;XRef=rs66468257 (chr16:20686042-20686362);Frequency=0.88
chr16	CG	SV	20686058	20686544	15	+	.	ID=2250;Type=deletion;Left=chr16:20686058-20686544;Right=chr16:20686378-20686738
chr16	CG	SV	20686378	20686738	15	+	.	ID=2250;Type=deletion;Left=chr16:20686058-20686544;Right=chr16:20686378-20686738
chr16	CG	SV	21501943	22618252	77	.	.	ID=4415;Type=probable-inversion;Left=chr16:21501943-21502154+;Right=chr16:22617784-22618252-;Distance=1116309;DiscordantMatePairAlignments=77;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	21501943	21502154	77	+	.	ID=4415;Type=probable-inversion;Left=chr16:21501943-21502154;Right=chr16:22617784-22618252
chr16	CG	SV	22617784	22618252	77	+	.	ID=4415;Type=probable-inversion;Left=chr16:21501943-21502154;Right=chr16:22617784-22618252
chr16	CG	SV	22955276	22957490	202	.	.	ID=2247;Type=deletion;Left=chr16:22955276-22955779+;Right=chr16:22957032-22957490+;Distance=1756;DiscordantMatePairAlignments=202;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67692612 (chr16:22955282-22957032);Frequency=0.88
chr16	CG	SV	22955276	22955779	202	+	.	ID=2247;Type=deletion;Left=chr16:22955276-22955779;Right=chr16:22957032-22957490
chr16	CG	SV	22957032	22957490	202	+	.	ID=2247;Type=deletion;Left=chr16:22955276-22955779;Right=chr16:22957032-22957490
chr16	CG	SV	23436051	23436587	21	.	.	ID=2246;Type=deletion;Left=chr16:23436051-23436538+;Right=chr16:23436364-23436587+;Distance=313;DiscordantMatePairAlignments=21;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	23436051	23436538	21	+	.	ID=2246;Type=deletion;Left=chr16:23436051-23436538;Right=chr16:23436364-23436587
chr16	CG	SV	23436364	23436587	21	+	.	ID=2246;Type=deletion;Left=chr16:23436051-23436538;Right=chr16:23436364-23436587
chr16	CG	SV	23818388	23819121	12	.	.	ID=2245;Type=deletion;Left=chr16:23818388-23818722+;Right=chr16:23818694-23819121+;Distance=306;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_002738:+;NM_212535:+;RightGenes=NM_002738:+;NM_212535:+;XRef=rs68159510 (chr16:23818388-23818694);Frequency=0.88
chr16	CG	SV	23818388	23818722	12	+	.	ID=2245;Type=deletion;Left=chr16:23818388-23818722;Right=chr16:23818694-23819121
chr16	CG	SV	23818694	23819121	12	+	.	ID=2245;Type=deletion;Left=chr16:23818388-23818722;Right=chr16:23818694-23819121
chr16	CG	SV	25247612	25251063	27	.	.	ID=2244;Type=deletion;Left=chr16:25247612-25247915+;Right=chr16:25250630-25251063+;Distance=3018;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72108142 (chr16:25247612-25250630);Frequency=0.88
chr16	CG	SV	25247612	25247915	27	+	.	ID=2244;Type=deletion;Left=chr16:25247612-25247915;Right=chr16:25250630-25251063
chr16	CG	SV	25250630	25251063	27	+	.	ID=2244;Type=deletion;Left=chr16:25247612-25247915;Right=chr16:25250630-25251063
chr16	CG	SV	26292437	26293788	83	.	.	ID=965;Type=tandem-duplication;Left=chr16:26292437-26292872-;Right=chr16:26293416-26293788-;Distance=916;DiscordantMatePairAlignments=83;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;Tandem GATG;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	26292437	26292872	83	-	.	ID=965;Type=tandem-duplication;Left=chr16:26292437-26292872;Right=chr16:26293416-26293788
chr16	CG	SV	26293416	26293788	83	-	.	ID=965;Type=tandem-duplication;Left=chr16:26292437-26292872;Right=chr16:26293416-26293788
chr16	CG	SV	26515537	26516315	19	.	.	ID=2243;Type=deletion;Left=chr16:26515537-26516094+;Right=chr16:26515879-26516315+;Distance=342;DiscordantMatePairAlignments=19;LeftRepeat=L1MD3:LINE:L1;Self chain;Tandem T;RightRepeat=L1MD3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71136521 (chr16:26515538-26515880);Frequency=1.00
chr16	CG	SV	26515537	26516094	19	+	.	ID=2243;Type=deletion;Left=chr16:26515537-26516094;Right=chr16:26515879-26516315
chr16	CG	SV	26515879	26516315	19	+	.	ID=2243;Type=deletion;Left=chr16:26515537-26516094;Right=chr16:26515879-26516315
chr16	CG	SV	29716403	30966334	64	.	.	ID=964;Type=tandem-duplication;Left=chr16:29716403-29716800-;Right=chr16:30965766-30966334-;Distance=1249534;DiscordantMatePairAlignments=64;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	29716403	29716800	64	-	.	ID=964;Type=tandem-duplication;Left=chr16:29716403-29716800;Right=chr16:30965766-30966334
chr16	CG	SV	30965766	30966334	64	-	.	ID=964;Type=tandem-duplication;Left=chr16:29716403-29716800;Right=chr16:30965766-30966334
chr16	CG	SV	33829643	33830892	22	.	.	ID=2238;Type=deletion;Left=chr16:33829643-33829906+;Right=chr16:33830566-33830892+;Distance=923;DiscordantMatePairAlignments=22;LeftRepeat=L1MEc:LINE:L1;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	33829643	33829906	22	+	.	ID=2238;Type=deletion;Left=chr16:33829643-33829906;Right=chr16:33830566-33830892
chr16	CG	SV	33830566	33830892	22	+	.	ID=2238;Type=deletion;Left=chr16:33829643-33829906;Right=chr16:33830566-33830892
chr16	CG	SV	33834291	33840535	16	.	.	ID=2236;Type=deletion;Left=chr16:33834291-33834753+;Right=chr16:33840263-33840535+;Distance=5972;DiscordantMatePairAlignments=16;LeftRepeat=L1PA4:LINE:L1;SegDup;Self chain;RightRepeat=L1MA9:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr16	CG	SV	33834291	33834753	16	+	.	ID=2236;Type=deletion;Left=chr16:33834291-33834753;Right=chr16:33840263-33840535
chr16	CG	SV	33840263	33840535	16	+	.	ID=2236;Type=deletion;Left=chr16:33834291-33834753;Right=chr16:33840263-33840535
chr16	CG	SV	33857196	33857986	45	.	.	ID=2233;Type=complex;Left=chr16:33857196-33857723+;Right=chr16:33857588-33857986+;Distance=392;DiscordantMatePairAlignments=45;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	33857196	33857723	45	+	.	ID=2233;Type=complex;Left=chr16:33857196-33857723;Right=chr16:33857588-33857986
chr16	CG	SV	33857588	33857986	45	+	.	ID=2233;Type=complex;Left=chr16:33857196-33857723;Right=chr16:33857588-33857986
chr16	CG	SV	33859793	33863532	136	.	.	ID=962;Type=tandem-duplication;Left=chr16:33859793-33860096-;Right=chr16:33863167-33863532-;Distance=3436;DiscordantMatePairAlignments=136;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	33859793	33860096	136	-	.	ID=962;Type=tandem-duplication;Left=chr16:33859793-33860096;Right=chr16:33863167-33863532
chr16	CG	SV	33863167	33863532	136	-	.	ID=962;Type=tandem-duplication;Left=chr16:33859793-33860096;Right=chr16:33863167-33863532
chr16	CG	SV	55174529	55175314	23	.	.	ID=2227;Type=deletion;Left=chr16:55174529-55174845+;Right=chr16:55174863-55175314+;Distance=334;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66919203 (chr16:55174529-55174863);Frequency=0.82
chr16	CG	SV	55174529	55174845	23	+	.	ID=2227;Type=deletion;Left=chr16:55174529-55174845;Right=chr16:55174863-55175314
chr16	CG	SV	55174863	55175314	23	+	.	ID=2227;Type=deletion;Left=chr16:55174529-55174845;Right=chr16:55174863-55175314
chr16	CG	SV	55923812	55925030	27	.	.	ID=2226;Type=deletion;Left=chr16:55923812-55924127+;Right=chr16:55924619-55925030+;Distance=807;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;RightRepeat=L1MB7:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr16	CG	SV	55923812	55924127	27	+	.	ID=2226;Type=deletion;Left=chr16:55923812-55924127;Right=chr16:55924619-55925030
chr16	CG	SV	55924619	55925030	27	+	.	ID=2226;Type=deletion;Left=chr16:55923812-55924127;Right=chr16:55924619-55925030
chr16	CG	SV	56282896	56285700	85	.	.	ID=2225;Type=deletion;Left=chr16:56282896-56283203+;Right=chr16:56285347-56285700+;Distance=2451;DiscordantMatePairAlignments=85;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr16	CG	SV	56282896	56283203	85	+	.	ID=2225;Type=deletion;Left=chr16:56282896-56283203;Right=chr16:56285347-56285700
chr16	CG	SV	56285347	56285700	85	+	.	ID=2225;Type=deletion;Left=chr16:56282896-56283203;Right=chr16:56285347-56285700
chr16	CG	SV	58589594	58590410	16	.	.	ID=2223;Type=deletion;Left=chr16:58589594-58589911+;Right=chr16:58589908-58590410+;Distance=314;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67576023 (chr16:58589594-58589908);Frequency=0.82
chr16	CG	SV	58589594	58589911	16	+	.	ID=2223;Type=deletion;Left=chr16:58589594-58589911;Right=chr16:58589908-58590410
chr16	CG	SV	58589908	58590410	16	+	.	ID=2223;Type=deletion;Left=chr16:58589594-58589911;Right=chr16:58589908-58590410
chr16	CG	SV	59467546	59471847	15	.	.	ID=2222;Type=deletion;Left=chr16:59467546-59467961+;Right=chr16:59471433-59471847+;Distance=3887;DiscordantMatePairAlignments=15;LeftRepeat=L1HS:LINE:L1;RightRepeat=MER65C:LTR:ERV1;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr16	CG	SV	59467546	59467961	15	+	.	ID=2222;Type=deletion;Left=chr16:59467546-59467961;Right=chr16:59471433-59471847
chr16	CG	SV	59471433	59471847	15	+	.	ID=2222;Type=deletion;Left=chr16:59467546-59467961;Right=chr16:59471433-59471847
chr16	CG	SV	60604377	60605138	10	.	.	ID=2221;Type=deletion;Left=chr16:60604377-60604731+;Right=chr16:60604710-60605138+;Distance=333;DiscordantMatePairAlignments=10;LeftRepeat=AluYb9:SINE:Alu;RightRepeat=;LeftGenes=NM_001796:-;RightGenes=NM_001796:-;XRef=rs10705170 (chr16:60604362-60604695);Frequency=0.88
chr16	CG	SV	60604377	60604731	10	+	.	ID=2221;Type=deletion;Left=chr16:60604377-60604731;Right=chr16:60604710-60605138
chr16	CG	SV	60604710	60605138	10	+	.	ID=2221;Type=deletion;Left=chr16:60604377-60604731;Right=chr16:60604710-60605138
chr16	CG	SV	68318987	68320904	48	.	.	ID=230;Type=distal-duplication;Left=chr16:68318987-68319307-;Right=chr16:68320423-68320904+;Distance=1116;DiscordantMatePairAlignments=48;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr16	CG	SV	68318987	68319307	48	-	.	ID=230;Type=distal-duplication;Left=chr16:68318987-68319307;Right=chr16:68320423-68320904
chr16	CG	SV	68320423	68320904	48	-	.	ID=230;Type=distal-duplication;Left=chr16:68318987-68319307;Right=chr16:68320423-68320904
chr16	CG	SV	68319632	68320388	160	.	.	ID=4411;Type=distal-duplication;Left=chr16:68319632-68319935+;Right=chr16:68319999-68320388-;Distance=756;DiscordantMatePairAlignments=160;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr16	CG	SV	68319632	68319935	160	+	.	ID=4411;Type=distal-duplication;Left=chr16:68319632-68319935;Right=chr16:68319999-68320388
chr16	CG	SV	68319999	68320388	160	+	.	ID=4411;Type=distal-duplication;Left=chr16:68319632-68319935;Right=chr16:68319999-68320388
chr16	CG	SV	68411832	68416523	12	.	.	ID=2216;Type=distal-duplication;Left=chr16:68411832-68412261+;Right=chr16:68416432-68416523+;Distance=4600;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_007014:+;NM_199423:+;RightGenes=NM_007014:+;NM_199423:+;XRef=;Frequency=0.41
chr16	CG	SV	68411832	68412261	12	+	.	ID=2216;Type=distal-duplication;Left=chr16:68411832-68412261;Right=chr16:68416432-68416523
chr16	CG	SV	68416432	68416523	12	+	.	ID=2216;Type=distal-duplication;Left=chr16:68411832-68412261;Right=chr16:68416432-68416523
chr16	CG	SV	68411710	68416522	36	.	.	ID=958;Type=distal-duplication;Left=chr16:68411710-68412186-;Right=chr16:68416396-68416522-;Distance=4336;DiscordantMatePairAlignments=36;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=Self chain;LeftGenes=NM_007014:+;NM_199423:+;RightGenes=NM_007014:+;NM_199423:+;XRef=;Frequency=0.41
chr16	CG	SV	68411710	68412186	36	-	.	ID=958;Type=distal-duplication;Left=chr16:68411710-68412186;Right=chr16:68416396-68416522
chr16	CG	SV	68416396	68416522	36	-	.	ID=958;Type=distal-duplication;Left=chr16:68411710-68412186;Right=chr16:68416396-68416522
chr16	CG	SV	69535300	69537865	149	.	.	ID=2214;Type=deletion;Left=chr16:69535300-69535764+;Right=chr16:69537395-69537865+;Distance=2095;DiscordantMatePairAlignments=149;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_032821:-;RightGenes=NM_032821:-;XRef=rs67363752 (chr16:69535300-69537395);Frequency=1.00
chr16	CG	SV	69535300	69535764	149	+	.	ID=2214;Type=deletion;Left=chr16:69535300-69535764;Right=chr16:69537395-69537865
chr16	CG	SV	69537395	69537865	149	+	.	ID=2214;Type=deletion;Left=chr16:69535300-69535764;Right=chr16:69537395-69537865
chr16	CG	SV	69721878	69722673	44	.	.	ID=2213;Type=deletion;Left=chr16:69721878-69722323+;Right=chr16:69722205-69722673+;Distance=327;DiscordantMatePairAlignments=44;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_017558:-;NM_032821:-;RightGenes=NM_017558:-;NM_032821:-;XRef=rs10527113 (chr16:69721864-69722191);Frequency=1.00
chr16	CG	SV	69721878	69722323	44	+	.	ID=2213;Type=deletion;Left=chr16:69721878-69722323;Right=chr16:69722205-69722673
chr16	CG	SV	69722205	69722673	44	+	.	ID=2213;Type=deletion;Left=chr16:69721878-69722323;Right=chr16:69722205-69722673
chr16	CG	SV	71310799	71311541	13	.	.	ID=2212;Type=deletion;Left=chr16:71310799-71311218+;Right=chr16:71311104-71311541+;Distance=305;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs10526612 (chr16:71310799-71311104);Frequency=1.00
chr16	CG	SV	71310799	71311218	13	+	.	ID=2212;Type=deletion;Left=chr16:71310799-71311218;Right=chr16:71311104-71311541
chr16	CG	SV	71311104	71311541	13	+	.	ID=2212;Type=deletion;Left=chr16:71310799-71311218;Right=chr16:71311104-71311541
chr16	CG	SV	73987402	73988356	20	.	.	ID=2211;Type=deletion;Left=chr16:73987402-73987756+;Right=chr16:73988244-73988356+;Distance=842;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_006324:-;RightGenes=NM_006324:-;XRef=;Frequency=0.82
chr16	CG	SV	73987402	73987756	20	+	.	ID=2211;Type=deletion;Left=chr16:73987402-73987756;Right=chr16:73988244-73988356
chr16	CG	SV	73988244	73988356	20	+	.	ID=2211;Type=deletion;Left=chr16:73987402-73987756;Right=chr16:73988244-73988356
chr16	CG	SV	75096634	75101943	27	.	.	ID=2210;Type=deletion;Left=chr16:75096634-75097030+;Right=chr16:75101526-75101943+;Distance=4892;DiscordantMatePairAlignments=27;LeftRepeat=L1ME1:LINE:L1;Self chain;RightRepeat=L1MB8:LINE:L1;Self chain;LeftGenes=NM_033401:+;NM_138994:+;RightGenes=NM_033401:+;NM_138994:+;XRef=rs67420665 (chr16:75096635-75101526);Frequency=1.00
chr16	CG	SV	75096634	75097030	27	+	.	ID=2210;Type=deletion;Left=chr16:75096634-75097030;Right=chr16:75101526-75101943
chr16	CG	SV	75101526	75101943	27	+	.	ID=2210;Type=deletion;Left=chr16:75096634-75097030;Right=chr16:75101526-75101943
chr16	CG	SV	76596029	76598871	39	.	.	ID=2209;Type=deletion;Left=chr16:76596029-76596467+;Right=chr16:76598692-76598871+;Distance=2663;DiscordantMatePairAlignments=39;LeftRepeat=;RightRepeat=MLT1F:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr16	CG	SV	76596029	76596467	39	+	.	ID=2209;Type=deletion;Left=chr16:76596029-76596467;Right=chr16:76598692-76598871
chr16	CG	SV	76598692	76598871	39	+	.	ID=2209;Type=deletion;Left=chr16:76596029-76596467;Right=chr16:76598692-76598871
chr16	CG	SV	76929139	76942733	84	.	.	ID=2208;Type=deletion;Left=chr16:76929139-76929549+;Right=chr16:76942399-76942733+;Distance=13260;DiscordantMatePairAlignments=84;LeftRepeat=;RightRepeat=L1MB8:LINE:L1;LeftGenes=NM_016373:+;RightGenes=NM_016373:+;XRef=;Frequency=0.35
chr16	CG	SV	76929139	76929549	84	+	.	ID=2208;Type=deletion;Left=chr16:76929139-76929549;Right=chr16:76942399-76942733
chr16	CG	SV	76942399	76942733	84	+	.	ID=2208;Type=deletion;Left=chr16:76929139-76929549;Right=chr16:76942399-76942733
chr16	CG	SV	79026145	79026905	18	.	.	ID=2207;Type=deletion;Left=chr16:79026145-79026446+;Right=chr16:79026458-79026905+;Distance=313;DiscordantMatePairAlignments=18;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr16	CG	SV	79026145	79026446	18	+	.	ID=2207;Type=deletion;Left=chr16:79026145-79026446;Right=chr16:79026458-79026905
chr16	CG	SV	79026458	79026905	18	+	.	ID=2207;Type=deletion;Left=chr16:79026145-79026446;Right=chr16:79026458-79026905
chr16	CG	SV	79534006	79541029	18	.	.	ID=2206;Type=deletion;Left=chr16:79534006-79534432+;Right=chr16:79540786-79541029+;Distance=6780;DiscordantMatePairAlignments=18;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr16	CG	SV	79534006	79534432	18	+	.	ID=2206;Type=deletion;Left=chr16:79534006-79534432;Right=chr16:79540786-79541029
chr16	CG	SV	79540786	79541029	18	+	.	ID=2206;Type=deletion;Left=chr16:79534006-79534432;Right=chr16:79540786-79541029
chr16	CG	SV	79676973	79677496	10	.	.	ID=2205;Type=deletion;Left=chr16:79676973-79677464+;Right=chr16:79677326-79677496+;Distance=353;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluYb8:SINE:Alu;Self chain;Tandem A;LeftGenes=NM_004483:-;RightGenes=NM_004483:-;XRef=;Frequency=1.00
chr16	CG	SV	79676973	79677464	10	+	.	ID=2205;Type=deletion;Left=chr16:79676973-79677464;Right=chr16:79677326-79677496
chr16	CG	SV	79677326	79677496	10	+	.	ID=2205;Type=deletion;Left=chr16:79676973-79677464;Right=chr16:79677326-79677496
chr16	CG	SV	79731414	79732105	14	.	.	ID=2204;Type=deletion;Left=chr16:79731414-79731862+;Right=chr16:79731921-79732105+;Distance=507;DiscordantMatePairAlignments=14;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_052892:-;RightGenes=NM_052892:-;XRef=rs71136601 (chr16:79731342-79731850);Frequency=0.94
chr16	CG	SV	79731414	79731862	14	+	.	ID=2204;Type=deletion;Left=chr16:79731414-79731862;Right=chr16:79731921-79732105
chr16	CG	SV	79731921	79732105	14	+	.	ID=2204;Type=deletion;Left=chr16:79731414-79731862;Right=chr16:79731921-79732105
chr16	CG	SV	80355723	80356707	158	.	.	ID=956;Type=tandem-duplication;Left=chr16:80355723-80356164-;Right=chr16:80356194-80356707-;Distance=543;DiscordantMatePairAlignments=158;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr16	CG	SV	80355723	80356164	158	-	.	ID=956;Type=tandem-duplication;Left=chr16:80355723-80356164;Right=chr16:80356194-80356707
chr16	CG	SV	80356194	80356707	158	-	.	ID=956;Type=tandem-duplication;Left=chr16:80355723-80356164;Right=chr16:80356194-80356707
chr16	CG	SV	83745853	83747523	13	.	.	ID=227;Type=distal-duplication;Left=chr16:83745853-83746252-;Right=chr16:83747302-83747523+;Distance=1050;DiscordantMatePairAlignments=13;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	83745853	83746252	13	-	.	ID=227;Type=distal-duplication;Left=chr16:83745853-83746252;Right=chr16:83747302-83747523
chr16	CG	SV	83747302	83747523	13	-	.	ID=227;Type=distal-duplication;Left=chr16:83745853-83746252;Right=chr16:83747302-83747523
chr16	CG	SV	83746446	83747108	13	.	.	ID=4410;Type=distal-duplication;Left=chr16:83746446-83746845+;Right=chr16:83746932-83747108-;Distance=662;DiscordantMatePairAlignments=13;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	83746446	83746845	13	+	.	ID=4410;Type=distal-duplication;Left=chr16:83746446-83746845;Right=chr16:83746932-83747108
chr16	CG	SV	83746932	83747108	13	+	.	ID=4410;Type=distal-duplication;Left=chr16:83746446-83746845;Right=chr16:83746932-83747108
chr16	CG	SV	84841822	84842532	30	.	.	ID=2202;Type=deletion;Left=chr16:84841822-84842345+;Right=chr16:84842130-84842532+;Distance=308;DiscordantMatePairAlignments=30;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66683203 (chr16:84841809-84842117);Frequency=1.00
chr16	CG	SV	84841822	84842345	30	+	.	ID=2202;Type=deletion;Left=chr16:84841822-84842345;Right=chr16:84842130-84842532
chr16	CG	SV	84842130	84842532	30	+	.	ID=2202;Type=deletion;Left=chr16:84841822-84842345;Right=chr16:84842130-84842532
chr16	CG	SV	87527250	87528010	36	.	.	ID=2200;Type=deletion;Left=chr16:87527250-87527621+;Right=chr16:87527694-87528010+;Distance=444;DiscordantMatePairAlignments=36;LeftRepeat=Self chain;TAR1:Satellite:telo;Tandem period 63;RightRepeat=Self chain;LeftGenes=NM_005187:-;NM_175931:-;RightGenes=NM_005187:-;NM_175931:-;XRef=;Frequency=0.53
chr16	CG	SV	87527250	87527621	36	+	.	ID=2200;Type=deletion;Left=chr16:87527250-87527621;Right=chr16:87527694-87528010
chr16	CG	SV	87527694	87528010	36	+	.	ID=2200;Type=deletion;Left=chr16:87527250-87527621;Right=chr16:87527694-87528010
chr17	CG	SV	20642	22127	31	.	.	ID=2196;Type=deletion;Left=chr17:20642-20963+;Right=chr17:21782-22127+;Distance=1140;DiscordantMatePairAlignments=31;LeftRepeat=(CCGGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 32;Tandem period 98;RightRepeat=SUBTEL_sa:Satellite:Satellite;Self chain;Tandem period 32;Tandem period 98;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr17	CG	SV	20642	20963	31	+	.	ID=2196;Type=deletion;Left=chr17:20642-20963;Right=chr17:21782-22127
chr17	CG	SV	21782	22127	31	+	.	ID=2196;Type=deletion;Left=chr17:20642-20963;Right=chr17:21782-22127
chr17	CG	SV	122942	123519	13	.	.	ID=2195;Type=deletion;Left=chr17:122942-123291+;Right=chr17:123418-123519+;Distance=476;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 28;RightRepeat=Self chain;Tandem period 28;LeftGenes=NM_006987:-;RightGenes=NM_006987:-;XRef=;Frequency=0.65
chr17	CG	SV	122942	123291	13	+	.	ID=2195;Type=deletion;Left=chr17:122942-123291;Right=chr17:123418-123519
chr17	CG	SV	123418	123519	13	+	.	ID=2195;Type=deletion;Left=chr17:122942-123291;Right=chr17:123418-123519
chr17	CG	SV	193767	197491	46	.	.	ID=2194;Type=deletion;Left=chr17:193767-194109+;Right=chr17:197053-197491+;Distance=3286;DiscordantMatePairAlignments=46;LeftRepeat=(CAT)n:Simple_repeat:Simple_repeat;Self chain;Tandem CAT;RightRepeat=(TAAA)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=NM_006987:-;RightGenes=NM_006987:-;XRef=rs71369090 (chr17:193724-197057);Frequency=0.65
chr17	CG	SV	193767	194109	46	+	.	ID=2194;Type=deletion;Left=chr17:193767-194109;Right=chr17:197053-197491
chr17	CG	SV	197053	197491	46	+	.	ID=2194;Type=deletion;Left=chr17:193767-194109;Right=chr17:197053-197491
chr17	CG	SV	203121	203497	32	.	.	ID=955;Type=tandem-duplication;Left=chr17:203121-203311-;Right=chr17:203345-203497-;Distance=186;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;Tandem period 97;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr17	CG	SV	203121	203311	32	-	.	ID=955;Type=tandem-duplication;Left=chr17:203121-203311;Right=chr17:203345-203497
chr17	CG	SV	203345	203497	32	-	.	ID=955;Type=tandem-duplication;Left=chr17:203121-203311;Right=chr17:203345-203497
chr17	CG	SV	210551	211232	68	.	.	ID=2193;Type=deletion;Left=chr17:210551-211091+;Right=chr17:210893-211232+;Distance=342;DiscordantMatePairAlignments=68;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71140412 (chr17:210497-210839);Frequency=1.00
chr17	CG	SV	210551	211091	68	+	.	ID=2193;Type=deletion;Left=chr17:210551-211091;Right=chr17:210893-211232
chr17	CG	SV	210893	211232	68	+	.	ID=2193;Type=deletion;Left=chr17:210551-211091;Right=chr17:210893-211232
chr17	CG	SV	213293	214209	13	.	.	ID=2192;Type=deletion;Left=chr17:213293-213638+;Right=chr17:213655-214209+;Distance=362;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=(GTGTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 20;LeftGenes=;RightGenes=;XRef=rs71145713 (chr17:213284-213648);Frequency=0.65
chr17	CG	SV	213293	213638	13	+	.	ID=2192;Type=deletion;Left=chr17:213293-213638;Right=chr17:213655-214209
chr17	CG	SV	213655	214209	13	+	.	ID=2192;Type=deletion;Left=chr17:213293-213638;Right=chr17:213655-214209
chr17	CG	SV	670605	671949	47	.	.	ID=2190;Type=deletion;Left=chr17:670605-671092+;Right=chr17:671744-671949+;Distance=1139;DiscordantMatePairAlignments=47;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem period 312;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_022463:-;RightGenes=NM_022463:-;XRef=;Frequency=0.94
chr17	CG	SV	670605	671092	47	+	.	ID=2190;Type=deletion;Left=chr17:670605-671092;Right=chr17:671744-671949
chr17	CG	SV	671744	671949	47	+	.	ID=2190;Type=deletion;Left=chr17:670605-671092;Right=chr17:671744-671949
chr17	CG	SV	685780	686602	147	.	.	ID=2189;Type=deletion;Left=chr17:685780-686257+;Right=chr17:686136-686602+;Distance=356;DiscordantMatePairAlignments=147;LeftRepeat=Self chain;Tandem period 133;Tandem period 45;RightRepeat=Self chain;Tandem period 133;Tandem period 45;LeftGenes=NM_022463:-;RightGenes=NM_022463:-;XRef=rs71371583 (chr17:685701-686103);Frequency=0.65
chr17	CG	SV	685780	686257	147	+	.	ID=2189;Type=deletion;Left=chr17:685780-686257;Right=chr17:686136-686602
chr17	CG	SV	686136	686602	147	+	.	ID=2189;Type=deletion;Left=chr17:685780-686257;Right=chr17:686136-686602
chr17	CG	SV	1068697	1069986	29	.	.	ID=226;Type=probable-inversion;Left=chr17:1068697-1069132-;Right=chr17:1069766-1069986+;Distance=634;DiscordantMatePairAlignments=29;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr17	CG	SV	1068697	1069132	29	-	.	ID=226;Type=probable-inversion;Left=chr17:1068697-1069132;Right=chr17:1069766-1069986
chr17	CG	SV	1069766	1069986	29	-	.	ID=226;Type=probable-inversion;Left=chr17:1068697-1069132;Right=chr17:1069766-1069986
chr17	CG	SV	1601419	1602625	26	.	.	ID=2186;Type=deletion;Left=chr17:1601419-1601851+;Right=chr17:1602150-1602625+;Distance=731;DiscordantMatePairAlignments=26;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSq:SINE:Alu;LeftGenes=NM_000934:+;NM_001165920:+;NM_001165921:+;RightGenes=NM_000934:+;NM_001165920:+;NM_001165921:+;XRef=;Frequency=0.47
chr17	CG	SV	1601419	1601851	26	+	.	ID=2186;Type=deletion;Left=chr17:1601419-1601851;Right=chr17:1602150-1602625
chr17	CG	SV	1602150	1602625	26	+	.	ID=2186;Type=deletion;Left=chr17:1601419-1601851;Right=chr17:1602150-1602625
chr17	CG	SV	8187408	8189024	49	.	.	ID=2184;Type=deletion;Left=chr17:8187408-8187873+;Right=chr17:8188764-8189024+;Distance=1356;DiscordantMatePairAlignments=49;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_153007:+;RightGenes=NM_153007:+;XRef=;Frequency=0.29
chr17	CG	SV	8187408	8187873	49	+	.	ID=2184;Type=deletion;Left=chr17:8187408-8187873;Right=chr17:8188764-8189024
chr17	CG	SV	8188764	8189024	49	+	.	ID=2184;Type=deletion;Left=chr17:8187408-8187873;Right=chr17:8188764-8189024
chr17	CG	SV	12137319	12138128	17	.	.	ID=2183;Type=deletion;Left=chr17:12137319-12137602+;Right=chr17:12137636-12138128+;Distance=317;DiscordantMatePairAlignments=17;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66688533 (chr17:12137319-12137636);Frequency=1.00
chr17	CG	SV	12137319	12137602	17	+	.	ID=2183;Type=deletion;Left=chr17:12137319-12137602;Right=chr17:12137636-12138128
chr17	CG	SV	12137636	12138128	17	+	.	ID=2183;Type=deletion;Left=chr17:12137319-12137602;Right=chr17:12137636-12138128
chr17	CG	SV	13161223	13162008	48	.	.	ID=2182;Type=deletion;Left=chr17:13161223-13161689+;Right=chr17:13161550-13162008+;Distance=327;DiscordantMatePairAlignments=48;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66560097 (chr17:13161223-13161550);Frequency=0.88
chr17	CG	SV	13161223	13161689	48	+	.	ID=2182;Type=deletion;Left=chr17:13161223-13161689;Right=chr17:13161550-13162008
chr17	CG	SV	13161550	13162008	48	+	.	ID=2182;Type=deletion;Left=chr17:13161223-13161689;Right=chr17:13161550-13162008
chr17	CG	SV	14130636	14132672	40	.	.	ID=2179;Type=deletion;Left=chr17:14130636-14131136+;Right=chr17:14132281-14132672+;Distance=1645;DiscordantMatePairAlignments=40;LeftRepeat=MER49:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68129134 (chr17:14130635-14132280);Frequency=1.00
chr17	CG	SV	14130636	14131136	40	+	.	ID=2179;Type=deletion;Left=chr17:14130636-14131136;Right=chr17:14132281-14132672
chr17	CG	SV	14132281	14132672	40	+	.	ID=2179;Type=deletion;Left=chr17:14130636-14131136;Right=chr17:14132281-14132672
chr17	CG	SV	15730283	15734900	39	.	.	ID=2178;Type=deletion;Left=chr17:15730283-15730680+;Right=chr17:15734510-15734900+;Distance=4227;DiscordantMatePairAlignments=39;LeftRepeat=Self chain;RightRepeat=(TTTA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem TTTA;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr17	CG	SV	15730283	15730680	39	+	.	ID=2178;Type=deletion;Left=chr17:15730283-15730680;Right=chr17:15734510-15734900
chr17	CG	SV	15734510	15734900	39	+	.	ID=2178;Type=deletion;Left=chr17:15730283-15730680;Right=chr17:15734510-15734900
chr17	CG	SV	17171098	17172276	133	.	.	ID=2177;Type=deletion;Left=chr17:17171098-17171552+;Right=chr17:17171974-17172276+;Distance=876;DiscordantMatePairAlignments=133;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_020201:+;RightGenes=NM_020201:+;XRef=rs66473553 (chr17:17171082-17171958);Frequency=0.82
chr17	CG	SV	17171098	17171552	133	+	.	ID=2177;Type=deletion;Left=chr17:17171098-17171552;Right=chr17:17171974-17172276
chr17	CG	SV	17171974	17172276	133	+	.	ID=2177;Type=deletion;Left=chr17:17171098-17171552;Right=chr17:17171974-17172276
chr17	CG	SV	18731889	18733260	75	.	.	ID=2175;Type=deletion;Left=chr17:18731889-18732311+;Right=chr17:18732881-18733260+;Distance=992;DiscordantMatePairAlignments=75;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=NM_002767:+;RightGenes=NM_002767:+;XRef=rs67043860 (chr17:18731878-18732903);Frequency=0.94
chr17	CG	SV	18731889	18732311	75	+	.	ID=2175;Type=deletion;Left=chr17:18731889-18732311;Right=chr17:18732881-18733260
chr17	CG	SV	18732881	18733260	75	+	.	ID=2175;Type=deletion;Left=chr17:18731889-18732311;Right=chr17:18732881-18733260
chr17	CG	SV	19512502	19513335	16	.	.	ID=2173;Type=deletion;Left=chr17:19512502-19512881+;Right=chr17:19512912-19513335+;Distance=410;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000382:+;NM_001031806:+;RightGenes=NM_000382:+;NM_001031806:+;XRef=;Frequency=0.53
chr17	CG	SV	19512502	19512881	16	+	.	ID=2173;Type=deletion;Left=chr17:19512502-19512881;Right=chr17:19512912-19513335
chr17	CG	SV	19512912	19513335	16	+	.	ID=2173;Type=deletion;Left=chr17:19512502-19512881;Right=chr17:19512912-19513335
chr17	CG	SV	21261870	21263930	232	.	.	ID=2172;Type=deletion;Left=chr17:21261870-21262302+;Right=chr17:21263414-21263930+;Distance=1544;DiscordantMatePairAlignments=232;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_021012:+;RightGenes=NM_021012:+;XRef=rs66470213 (chr17:21261871-21263414);Frequency=1.00
chr17	CG	SV	21261870	21262302	232	+	.	ID=2172;Type=deletion;Left=chr17:21261870-21262302;Right=chr17:21263414-21263930
chr17	CG	SV	21263414	21263930	232	+	.	ID=2172;Type=deletion;Left=chr17:21261870-21262302;Right=chr17:21263414-21263930
chr17	CG	SV	23804514	23808001	88	.	.	ID=2170;Type=deletion;Left=chr17:23804514-23804786+;Right=chr17:23807620-23808001+;Distance=3106;DiscordantMatePairAlignments=88;LeftRepeat=MER21B:LTR:ERV1;Self chain;RightRepeat=SVA:Other:Other;Self chain;Tandem period 40;LeftGenes=;RightGenes=;XRef=rs72148141 (chr17:23804512-23807618);Frequency=0.76
chr17	CG	SV	23804514	23804786	88	+	.	ID=2170;Type=deletion;Left=chr17:23804514-23804786;Right=chr17:23807620-23808001
chr17	CG	SV	23807620	23808001	88	+	.	ID=2170;Type=deletion;Left=chr17:23804514-23804786;Right=chr17:23807620-23808001
chr17	CG	SV	35631637	35632323	26	.	.	ID=2052;Type=deletion;Left=chr17:35631637-35632189+;Right=chr17:35632108-35632323+;Distance=471;DiscordantMatePairAlignments=26;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_133264:+;RightGenes=NM_133264:+;XRef=;Frequency=1.00
chr17	CG	SV	35631637	35632189	26	+	.	ID=2052;Type=deletion;Left=chr17:35631637-35632189;Right=chr17:35632108-35632323
chr17	CG	SV	35632108	35632323	26	+	.	ID=2052;Type=deletion;Left=chr17:35631637-35632189;Right=chr17:35632108-35632323
chr17	CG	SV	38734548	38756717	11	.	.	ID=104;Type=probable-inversion;Left=chr17:38734548-38734833-;Right=chr17:38756578-38756717+;Distance=21745;DiscordantMatePairAlignments=11;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=LTR13:LTR:ERVK;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr17	CG	SV	38734548	38734833	11	-	.	ID=104;Type=probable-inversion;Left=chr17:38734548-38734833;Right=chr17:38756578-38756717
chr17	CG	SV	38756578	38756717	11	-	.	ID=104;Type=probable-inversion;Left=chr17:38734548-38734833;Right=chr17:38756578-38756717
chr17	CG	SV	38736800	38819413	43	.	.	ID=103;Type=probable-inversion;Left=chr17:38736800-38737115-;Right=chr17:38819095-38819413+;Distance=81980;DiscordantMatePairAlignments=43;LeftRepeat=SegDup;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=NR_027412:-;NR_027413:-;XRef=;Frequency=1.00
chr17	CG	SV	38736800	38737115	43	-	.	ID=103;Type=probable-inversion;Left=chr17:38736800-38737115;Right=chr17:38819095-38819413
chr17	CG	SV	38819095	38819413	43	-	.	ID=103;Type=probable-inversion;Left=chr17:38736800-38737115;Right=chr17:38819095-38819413
chr17	CG	SV	38738263	38755764	13	.	.	ID=2050;Type=deletion;Left=chr17:38738263-38738762+;Right=chr17:38755383-38755764+;Distance=17120;DiscordantMatePairAlignments=13;LeftRepeat=AluSx:SINE:Alu;SegDup;Self chain;Tandem A;RightRepeat=AluSg:SINE:Alu;SegDup;Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr17	CG	SV	38738263	38738762	13	+	.	ID=2050;Type=deletion;Left=chr17:38738263-38738762;Right=chr17:38755383-38755764
chr17	CG	SV	38755383	38755764	13	+	.	ID=2050;Type=deletion;Left=chr17:38738263-38738762;Right=chr17:38755383-38755764
chr17	CG	SV	38739015	38821921	20	.	.	ID=2048;Type=deletion;Left=chr17:38739015-38739447+;Right=chr17:38821501-38821921+;Distance=82486;DiscordantMatePairAlignments=20;LeftRepeat=MIRb:SINE:MIR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NR_027412:-;NR_027413:-;XRef=;Frequency=0.82
chr17	CG	SV	38739015	38739447	20	+	.	ID=2048;Type=deletion;Left=chr17:38739015-38739447;Right=chr17:38821501-38821921
chr17	CG	SV	38821501	38821921	20	+	.	ID=2048;Type=deletion;Left=chr17:38739015-38739447;Right=chr17:38821501-38821921
chr17	CG	SV	38793643	38796187	66	.	.	ID=2049;Type=deletion;Left=chr17:38793643-38794125+;Right=chr17:38795862-38796187+;Distance=2219;DiscordantMatePairAlignments=66;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66799059 (chr17:38793491-38795710);Frequency=0.41
chr17	CG	SV	38793643	38794125	66	+	.	ID=2049;Type=deletion;Left=chr17:38793643-38794125;Right=chr17:38795862-38796187
chr17	CG	SV	38795862	38796187	66	+	.	ID=2049;Type=deletion;Left=chr17:38793643-38794125;Right=chr17:38795862-38796187
chr17	CG	SV	38872583	38874172	25	.	.	ID=2047;Type=deletion;Left=chr17:38872583-38873056+;Right=chr17:38873871-38874172+;Distance=1288;DiscordantMatePairAlignments=25;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr17	CG	SV	38872583	38873056	25	+	.	ID=2047;Type=deletion;Left=chr17:38872583-38873056;Right=chr17:38873871-38874172
chr17	CG	SV	38873871	38874172	25	+	.	ID=2047;Type=deletion;Left=chr17:38872583-38873056;Right=chr17:38873871-38874172
chr17	CG	SV	41643225	42531128	30	.	.	ID=864;Type=tandem-duplication;Left=chr17:41643225-41643642-;Right=chr17:42530741-42531128-;Distance=887486;DiscordantMatePairAlignments=30;LeftRepeat=AluSc:SINE:Alu;Self chain;Tandem A;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr17	CG	SV	41643225	41643642	30	-	.	ID=864;Type=tandem-duplication;Left=chr17:41643225-41643642;Right=chr17:42530741-42531128
chr17	CG	SV	42530741	42531128	30	-	.	ID=864;Type=tandem-duplication;Left=chr17:41643225-41643642;Right=chr17:42530741-42531128
chr17	CG	SV	42569727	42571251	343	.	.	ID=2043;Type=complex;Left=chr17:42569727-42570193+;Right=chr17:42571105-42571251+;Distance=1378;DiscordantMatePairAlignments=343;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42569727	42570193	343	+	.	ID=2043;Type=complex;Left=chr17:42569727-42570193;Right=chr17:42571105-42571251
chr17	CG	SV	42571105	42571251	343	+	.	ID=2043;Type=complex;Left=chr17:42569727-42570193;Right=chr17:42571105-42571251
chr17	CG	SV	42569727	42574708	272	.	.	ID=2042;Type=complex;Left=chr17:42569727-42570174+;Right=chr17:42574216-42574708+;Distance=4489;DiscordantMatePairAlignments=272;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42569727	42570174	272	+	.	ID=2042;Type=complex;Left=chr17:42569727-42570174;Right=chr17:42574216-42574708
chr17	CG	SV	42574216	42574708	272	+	.	ID=2042;Type=complex;Left=chr17:42569727-42570174;Right=chr17:42574216-42574708
chr17	CG	SV	42574803	42589399	28	.	.	ID=2036;Type=complex;Left=chr17:42574803-42574949+;Right=chr17:42589277-42589399+;Distance=14474;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42574803	42574949	28	+	.	ID=2036;Type=complex;Left=chr17:42574803-42574949;Right=chr17:42589277-42589399
chr17	CG	SV	42589277	42589399	28	+	.	ID=2036;Type=complex;Left=chr17:42574803-42574949;Right=chr17:42589277-42589399
chr17	CG	SV	42576345	42589643	242	.	.	ID=2035;Type=complex;Left=chr17:42576345-42576447+;Right=chr17:42589277-42589643+;Distance=12932;DiscordantMatePairAlignments=242;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42576345	42576447	242	+	.	ID=2035;Type=complex;Left=chr17:42576345-42576447;Right=chr17:42589277-42589643
chr17	CG	SV	42589277	42589643	242	+	.	ID=2035;Type=complex;Left=chr17:42576345-42576447;Right=chr17:42589277-42589643
chr17	CG	SV	42584282	42589687	23	.	.	ID=2034;Type=complex;Left=chr17:42584282-42584384+;Right=chr17:42589277-42589687+;Distance=4995;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=0.88
chr17	CG	SV	42584282	42584384	23	+	.	ID=2034;Type=complex;Left=chr17:42584282-42584384;Right=chr17:42589277-42589687
chr17	CG	SV	42589277	42589687	23	+	.	ID=2034;Type=complex;Left=chr17:42584282-42584384;Right=chr17:42589277-42589687
chr17	CG	SV	42589472	42590671	154	.	.	ID=2032;Type=complex;Left=chr17:42589472-42589658+;Right=chr17:42590569-42590671+;Distance=1097;DiscordantMatePairAlignments=154;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42589472	42589658	154	+	.	ID=2032;Type=complex;Left=chr17:42589472-42589658;Right=chr17:42590569-42590671
chr17	CG	SV	42590569	42590671	154	+	.	ID=2032;Type=complex;Left=chr17:42589472-42589658;Right=chr17:42590569-42590671
chr17	CG	SV	42589747	42602407	24	.	.	ID=2031;Type=complex;Left=chr17:42589747-42590164+;Right=chr17:42602281-42602407+;Distance=12534;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42589747	42590164	24	+	.	ID=2031;Type=complex;Left=chr17:42589747-42590164;Right=chr17:42602281-42602407
chr17	CG	SV	42602281	42602407	24	+	.	ID=2031;Type=complex;Left=chr17:42589747-42590164;Right=chr17:42602281-42602407
chr17	CG	SV	42589747	42604421	29	.	.	ID=2030;Type=complex;Left=chr17:42589747-42590144+;Right=chr17:42604280-42604421+;Distance=14533;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42589747	42590144	29	+	.	ID=2030;Type=complex;Left=chr17:42589747-42590144;Right=chr17:42604280-42604421
chr17	CG	SV	42604280	42604421	29	+	.	ID=2030;Type=complex;Left=chr17:42589747-42590144;Right=chr17:42604280-42604421
chr17	CG	SV	42590669	42614005	143	.	.	ID=2027;Type=complex;Left=chr17:42590669-42590770+;Right=chr17:42613926-42614005+;Distance=23257;DiscordantMatePairAlignments=143;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42590669	42590770	143	+	.	ID=2027;Type=complex;Left=chr17:42590669-42590770;Right=chr17:42613926-42614005
chr17	CG	SV	42613926	42614005	143	+	.	ID=2027;Type=complex;Left=chr17:42590669-42590770;Right=chr17:42613926-42614005
chr17	CG	SV	42590669	42621654	70	.	.	ID=2026;Type=complex;Left=chr17:42590669-42590768+;Right=chr17:42621509-42621654+;Distance=30840;DiscordantMatePairAlignments=70;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42590669	42590768	70	+	.	ID=2026;Type=complex;Left=chr17:42590669-42590768;Right=chr17:42621509-42621654
chr17	CG	SV	42621509	42621654	70	+	.	ID=2026;Type=complex;Left=chr17:42590669-42590768;Right=chr17:42621509-42621654
chr17	CG	SV	42602407	42621654	26	.	.	ID=2024;Type=complex;Left=chr17:42602407-42602529+;Right=chr17:42621508-42621654+;Distance=19101;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42602407	42602529	26	+	.	ID=2024;Type=complex;Left=chr17:42602407-42602529;Right=chr17:42621508-42621654
chr17	CG	SV	42621508	42621654	26	+	.	ID=2024;Type=complex;Left=chr17:42602407-42602529;Right=chr17:42621508-42621654
chr17	CG	SV	44392227	44393136	49	.	.	ID=2021;Type=deletion;Left=chr17:44392227-44392551+;Right=chr17:44392867-44393136+;Distance=640;DiscordantMatePairAlignments=49;LeftRepeat=Self chain;Tandem period 40;RightRepeat=Self chain;LeftGenes=NM_004123:-;RightGenes=NM_004123:-;XRef=rs71886448 (chr17:44392094-44392694);Frequency=1.00
chr17	CG	SV	44392227	44392551	49	+	.	ID=2021;Type=deletion;Left=chr17:44392227-44392551;Right=chr17:44392867-44393136
chr17	CG	SV	44392867	44393136	49	+	.	ID=2021;Type=deletion;Left=chr17:44392227-44392551;Right=chr17:44392867-44393136
chr17	CG	SV	44583438	44584261	13	.	.	ID=2020;Type=deletion;Left=chr17:44583438-44583567+;Right=chr17:44583768-44584261+;Distance=330;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=Tandem A;LeftGenes=NM_001159387:+;NM_001159388:+;NM_153446:+;RightGenes=NM_001159387:+;NM_001159388:+;NM_153446:+;XRef=rs66895707 (chr17:44583452-44583782);Frequency=1.00
chr17	CG	SV	44583438	44583567	13	+	.	ID=2020;Type=deletion;Left=chr17:44583438-44583567;Right=chr17:44583768-44584261
chr17	CG	SV	44583768	44584261	13	+	.	ID=2020;Type=deletion;Left=chr17:44583438-44583567;Right=chr17:44583768-44584261
chr17	CG	SV	44706794	44708378	42	.	.	ID=2019;Type=deletion;Left=chr17:44706794-44707255+;Right=chr17:44708097-44708378+;Distance=1303;DiscordantMatePairAlignments=42;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr17	CG	SV	44706794	44707255	42	+	.	ID=2019;Type=deletion;Left=chr17:44706794-44707255;Right=chr17:44708097-44708378
chr17	CG	SV	44708097	44708378	42	+	.	ID=2019;Type=deletion;Left=chr17:44706794-44707255;Right=chr17:44708097-44708378
chr17	CG	SV	45782537	45783178	38	.	.	ID=2018;Type=deletion;Left=chr17:45782537-45783042+;Right=chr17:45782921-45783178+;Distance=384;DiscordantMatePairAlignments=38;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_022167:+;RightGenes=NM_022167:+;XRef=rs71143435 (chr17:45782307-45782690);Frequency=0.47
chr17	CG	SV	45782537	45783042	38	+	.	ID=2018;Type=deletion;Left=chr17:45782537-45783042;Right=chr17:45782921-45783178
chr17	CG	SV	45782921	45783178	38	+	.	ID=2018;Type=deletion;Left=chr17:45782537-45783042;Right=chr17:45782921-45783178
chr17	CG	SV	62951327	62952076	11	.	.	ID=2010;Type=deletion;Left=chr17:62951327-62951626+;Right=chr17:62951657-62952076+;Distance=330;DiscordantMatePairAlignments=11;LeftRepeat=Charlie5:DNA:MER1_type;Tandem T;RightRepeat=Charlie5:DNA:MER1_type;LeftGenes=NM_012417:+;NM_181671:+;RightGenes=NM_012417:+;NM_181671:+;XRef=rs66954252 (chr17:62951327-62951657);Frequency=1.00
chr17	CG	SV	62951327	62951626	11	+	.	ID=2010;Type=deletion;Left=chr17:62951327-62951626;Right=chr17:62951657-62952076
chr17	CG	SV	62951657	62952076	11	+	.	ID=2010;Type=deletion;Left=chr17:62951327-62951626;Right=chr17:62951657-62952076
chr17	CG	SV	64599261	64599960	18	.	.	ID=2007;Type=deletion;Left=chr17:64599261-64599690+;Right=chr17:64599572-64599960+;Distance=311;DiscordantMatePairAlignments=18;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_080284:-;RightGenes=NM_080284:-;XRef=rs67916052 (chr17:64599246-64599557);Frequency=0.94
chr17	CG	SV	64599261	64599690	18	+	.	ID=2007;Type=deletion;Left=chr17:64599261-64599690;Right=chr17:64599572-64599960
chr17	CG	SV	64599572	64599960	18	+	.	ID=2007;Type=deletion;Left=chr17:64599261-64599690;Right=chr17:64599572-64599960
chr17	CG	SV	65468848	65469678	177	.	.	ID=862;Type=tandem-duplication;Left=chr17:65468848-65469279-;Right=chr17:65469273-65469678-;Distance=399;DiscordantMatePairAlignments=177;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr17	CG	SV	65468848	65469279	177	-	.	ID=862;Type=tandem-duplication;Left=chr17:65468848-65469279;Right=chr17:65469273-65469678
chr17	CG	SV	65469273	65469678	177	-	.	ID=862;Type=tandem-duplication;Left=chr17:65468848-65469279;Right=chr17:65469273-65469678
chr17	CG	SV	65536290	65536914	30	.	.	ID=861;Type=tandem-duplication;Left=chr17:65536290-65536607-;Right=chr17:65536588-65536914-;Distance=307;DiscordantMatePairAlignments=30;LeftRepeat=L1P4e:LINE:L1;RightRepeat=L1P4e:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr17	CG	SV	65536290	65536607	30	-	.	ID=861;Type=tandem-duplication;Left=chr17:65536290-65536607;Right=chr17:65536588-65536914
chr17	CG	SV	65536588	65536914	30	-	.	ID=861;Type=tandem-duplication;Left=chr17:65536290-65536607;Right=chr17:65536588-65536914
chr17	CG	SV	67363749	67364511	18	.	.	ID=2006;Type=deletion;Left=chr17:67363749-67364207+;Right=chr17:67364076-67364511+;Distance=327;DiscordantMatePairAlignments=18;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66904137 (chr17:67363734-67364061);Frequency=1.00
chr17	CG	SV	67363749	67364207	18	+	.	ID=2006;Type=deletion;Left=chr17:67363749-67364207;Right=chr17:67364076-67364511
chr17	CG	SV	67364076	67364511	18	+	.	ID=2006;Type=deletion;Left=chr17:67363749-67364207;Right=chr17:67364076-67364511
chr17	CG	SV	69234120	69234837	31	.	.	ID=2005;Type=deletion;Left=chr17:69234120-69234434+;Right=chr17:69234626-69234837+;Distance=506;DiscordantMatePairAlignments=31;LeftRepeat=Self chain;Tandem period 46;RightRepeat=Self chain;Tandem period 46;LeftGenes=;RightGenes=;XRef=rs72123924 (chr17:69233997-69234457);Frequency=0.47
chr17	CG	SV	69234120	69234434	31	+	.	ID=2005;Type=deletion;Left=chr17:69234120-69234434;Right=chr17:69234626-69234837
chr17	CG	SV	69234626	69234837	31	+	.	ID=2005;Type=deletion;Left=chr17:69234120-69234434;Right=chr17:69234626-69234837
chr17	CG	SV	70240990	70241319	12	.	.	ID=860;Type=tandem-duplication;Left=chr17:70240990-70241146-;Right=chr17:70241194-70241319-;Distance=173;DiscordantMatePairAlignments=12;LeftRepeat=(ATGTG)n:Simple_repeat:Simple_repeat;RightRepeat=(GTGTG)n:Simple_repeat:Simple_repeat;Tandem period 16;LeftGenes=NM_175738:+;RightGenes=NM_175738:+;XRef=;Frequency=0.65
chr17	CG	SV	70240990	70241146	12	-	.	ID=860;Type=tandem-duplication;Left=chr17:70240990-70241146;Right=chr17:70241194-70241319
chr17	CG	SV	70241194	70241319	12	-	.	ID=860;Type=tandem-duplication;Left=chr17:70240990-70241146;Right=chr17:70241194-70241319
chr17	CG	SV	72499125	72499910	20	.	.	ID=2002;Type=deletion;Left=chr17:72499125-72499347+;Right=chr17:72499444-72499910+;Distance=319;DiscordantMatePairAlignments=20;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=MSTA:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs10522931 (chr17:72499115-72499434);Frequency=0.94
chr17	CG	SV	72499125	72499347	20	+	.	ID=2002;Type=deletion;Left=chr17:72499125-72499347;Right=chr17:72499444-72499910
chr17	CG	SV	72499444	72499910	20	+	.	ID=2002;Type=deletion;Left=chr17:72499125-72499347;Right=chr17:72499444-72499910
chr17	CG	SV	73793875	73795315	12	.	.	ID=2000;Type=deletion;Left=chr17:73793875-73794135+;Right=chr17:73795069-73795315+;Distance=1194;DiscordantMatePairAlignments=12;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr17	CG	SV	73793875	73794135	12	+	.	ID=2000;Type=deletion;Left=chr17:73793875-73794135;Right=chr17:73795069-73795315
chr17	CG	SV	73795069	73795315	12	+	.	ID=2000;Type=deletion;Left=chr17:73793875-73794135;Right=chr17:73795069-73795315
chr17	CG	SV	76076282	76078695	35	.	.	ID=1999;Type=deletion;Left=chr17:76076282-76076457+;Right=chr17:76078381-76078695+;Distance=2099;DiscordantMatePairAlignments=35;LeftRepeat=L2:LINE:L2;Tandem period 18;Tandem period 36;RightRepeat=G-rich:Low_complexity:Low_complexity;Tandem period 18;Tandem period 36;LeftGenes=;RightGenes=;XRef=;Frequency=0.25
chr17	CG	SV	76076282	76076457	35	+	.	ID=1999;Type=deletion;Left=chr17:76076282-76076457;Right=chr17:76078381-76078695
chr17	CG	SV	76078381	76078695	35	+	.	ID=1999;Type=deletion;Left=chr17:76076282-76076457;Right=chr17:76078381-76078695
chr17	CG	SV	76798050	76798710	12	.	.	ID=1998;Type=deletion;Left=chr17:76798050-76798443+;Right=chr17:76798505-76798710+;Distance=455;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem period 35;RightRepeat=Self chain;Tandem period 15;LeftGenes=NM_001009811:-;NM_014984:-;RightGenes=NM_001009811:-;NM_014984:-;XRef=;Frequency=0.71
chr17	CG	SV	76798050	76798443	12	+	.	ID=1998;Type=deletion;Left=chr17:76798050-76798443;Right=chr17:76798505-76798710
chr17	CG	SV	76798505	76798710	12	+	.	ID=1998;Type=deletion;Left=chr17:76798050-76798443;Right=chr17:76798505-76798710
chr17	CG	SV	77085099	77086388	19	.	.	ID=1997;Type=deletion;Left=chr17:77085099-77085645+;Right=chr17:77086086-77086388+;Distance=987;DiscordantMatePairAlignments=19;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72252307 (chr17:77085099-77086086);Frequency=0.88
chr17	CG	SV	77085099	77085645	19	+	.	ID=1997;Type=deletion;Left=chr17:77085099-77085645;Right=chr17:77086086-77086388
chr17	CG	SV	77086086	77086388	19	+	.	ID=1997;Type=deletion;Left=chr17:77085099-77085645;Right=chr17:77086086-77086388
chr17	CG	SV	78653184	78654728	132	.	.	ID=1996;Type=deletion;Left=chr17:78653184-78653670+;Right=chr17:78654274-78654728+;Distance=1090;DiscordantMatePairAlignments=132;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72246678 (chr17:78653184-78654274);Frequency=0.59
chr17	CG	SV	78653184	78653670	132	+	.	ID=1996;Type=deletion;Left=chr17:78653184-78653670;Right=chr17:78654274-78654728
chr17	CG	SV	78654274	78654728	132	+	.	ID=1996;Type=deletion;Left=chr17:78653184-78653670;Right=chr17:78654274-78654728
chr18	CG	SV	97497	98508	997	.	.	ID=825;Type=complex;Left=chr18:97497-97904-;Right=chr18:97887-98508-;Distance=604;DiscordantMatePairAlignments=997;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr18	CG	SV	97497	97904	997	-	.	ID=825;Type=complex;Left=chr18:97497-97904;Right=chr18:97887-98508
chr18	CG	SV	97887	98508	997	-	.	ID=825;Type=complex;Left=chr18:97497-97904;Right=chr18:97887-98508
chr18	CG	SV	97856	99088	160	.	.	ID=821;Type=complex;Left=chr18:97856-98439-;Right=chr18:98561-99088-;Distance=649;DiscordantMatePairAlignments=160;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr18	CG	SV	97856	98439	160	-	.	ID=821;Type=complex;Left=chr18:97856-98439;Right=chr18:98561-99088
chr18	CG	SV	98561	99088	160	-	.	ID=821;Type=complex;Left=chr18:97856-98439;Right=chr18:98561-99088
chr18	CG	SV	98450	99041	17	.	.	ID=1977;Type=complex;Left=chr18:98450-99190+;Right=chr18:98723-99041+;Distance=273;DiscordantMatePairAlignments=17;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr18	CG	SV	98450	99190	17	+	.	ID=1977;Type=complex;Left=chr18:98450-99190;Right=chr18:98723-99041
chr18	CG	SV	98723	99041	17	+	.	ID=1977;Type=complex;Left=chr18:98450-99190;Right=chr18:98723-99041
chr18	CG	SV	98613	99470	105	.	.	ID=1966;Type=complex;Left=chr18:98613-99041+;Right=chr18:99020-99470+;Distance=407;DiscordantMatePairAlignments=105;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr18	CG	SV	98613	99041	105	+	.	ID=1966;Type=complex;Left=chr18:98613-99041;Right=chr18:99020-99470
chr18	CG	SV	99020	99470	105	+	.	ID=1966;Type=complex;Left=chr18:98613-99041;Right=chr18:99020-99470
chr18	CG	SV	5314645	5316546	40	.	.	ID=1961;Type=deletion;Left=chr18:5314645-5315084+;Right=chr18:5316244-5316546+;Distance=1599;DiscordantMatePairAlignments=40;LeftRepeat=;RightRepeat=L1PA11:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71657028 (chr18:5314645-5316244);Frequency=0.94
chr18	CG	SV	5314645	5315084	40	+	.	ID=1961;Type=deletion;Left=chr18:5314645-5315084;Right=chr18:5316244-5316546
chr18	CG	SV	5316244	5316546	40	+	.	ID=1961;Type=deletion;Left=chr18:5314645-5315084;Right=chr18:5316244-5316546
chr18	CG	SV	9215120	9215793	18	.	.	ID=1959;Type=deletion;Left=chr18:9215120-9215550+;Right=chr18:9215455-9215793+;Distance=335;DiscordantMatePairAlignments=18;LeftRepeat=Kanga2_a:DNA:Tc2;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_001083625:+;NM_015208:+;RightGenes=NM_001083625:+;NM_015208:+;XRef=rs6146207 (chr18:9215118-9215453);Frequency=0.94
chr18	CG	SV	9215120	9215550	18	+	.	ID=1959;Type=deletion;Left=chr18:9215120-9215550;Right=chr18:9215455-9215793
chr18	CG	SV	9215455	9215793	18	+	.	ID=1959;Type=deletion;Left=chr18:9215120-9215550;Right=chr18:9215455-9215793
chr18	CG	SV	20157288	20158844	14	.	.	ID=1948;Type=deletion;Left=chr18:20157288-20157577+;Right=chr18:20158591-20158844+;Distance=1303;DiscordantMatePairAlignments=14;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;Tandem A;LeftGenes=NM_080597:-;RightGenes=NM_080597:-;XRef=rs67570303 (chr18:20157370-20158601);Frequency=0.41
chr18	CG	SV	20157288	20157577	14	+	.	ID=1948;Type=deletion;Left=chr18:20157288-20157577;Right=chr18:20158591-20158844
chr18	CG	SV	20158591	20158844	14	+	.	ID=1948;Type=deletion;Left=chr18:20157288-20157577;Right=chr18:20158591-20158844
chr18	CG	SV	20244740	20246373	126	.	.	ID=1947;Type=deletion;Left=chr18:20244740-20245147+;Right=chr18:20246045-20246373+;Distance=1305;DiscordantMatePairAlignments=126;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr18	CG	SV	20244740	20245147	126	+	.	ID=1947;Type=deletion;Left=chr18:20244740-20245147;Right=chr18:20246045-20246373
chr18	CG	SV	20246045	20246373	126	+	.	ID=1947;Type=deletion;Left=chr18:20244740-20245147;Right=chr18:20246045-20246373
chr18	CG	SV	21146492	21147342	16	.	.	ID=1946;Type=deletion;Left=chr18:21146492-21146822+;Right=chr18:21146816-21147342+;Distance=324;DiscordantMatePairAlignments=16;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_015461:-;RightGenes=NM_015461:-;XRef=rs35042432 (chr18:21146492-21146816);Frequency=0.82
chr18	CG	SV	21146492	21146822	16	+	.	ID=1946;Type=deletion;Left=chr18:21146492-21146822;Right=chr18:21146816-21147342
chr18	CG	SV	21146816	21147342	16	+	.	ID=1946;Type=deletion;Left=chr18:21146492-21146822;Right=chr18:21146816-21147342
chr18	CG	SV	22825618	22826709	125	.	.	ID=1944;Type=deletion;Left=chr18:22825618-22826044+;Right=chr18:22826339-22826709+;Distance=721;DiscordantMatePairAlignments=125;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=NM_031422:-;RightGenes=NM_031422:-;XRef=;Frequency=0.82
chr18	CG	SV	22825618	22826044	125	+	.	ID=1944;Type=deletion;Left=chr18:22825618-22826044;Right=chr18:22826339-22826709
chr18	CG	SV	22826339	22826709	125	+	.	ID=1944;Type=deletion;Left=chr18:22825618-22826044;Right=chr18:22826339-22826709
chr18	CG	SV	24081890	24082604	14	.	.	ID=1943;Type=deletion;Left=chr18:24081890-24082313+;Right=chr18:24082223-24082604+;Distance=333;DiscordantMatePairAlignments=14;LeftRepeat=AluYb9:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67325144 (chr18:24081874-24082207);Frequency=1.00
chr18	CG	SV	24081890	24082313	14	+	.	ID=1943;Type=deletion;Left=chr18:24081890-24082313;Right=chr18:24082223-24082604
chr18	CG	SV	24082223	24082604	14	+	.	ID=1943;Type=deletion;Left=chr18:24081890-24082313;Right=chr18:24082223-24082604
chr18	CG	SV	25883681	25884342	21	.	.	ID=1942;Type=deletion;Left=chr18:25883681-25884171+;Right=chr18:25884007-25884342+;Distance=326;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10705442 (chr18:25883678-25884004);Frequency=0.94
chr18	CG	SV	25883681	25884171	21	+	.	ID=1942;Type=deletion;Left=chr18:25883681-25884171;Right=chr18:25884007-25884342
chr18	CG	SV	25884007	25884342	21	+	.	ID=1942;Type=deletion;Left=chr18:25883681-25884171;Right=chr18:25884007-25884342
chr18	CG	SV	30915970	30916646	12	.	.	ID=1941;Type=deletion;Left=chr18:30915970-30916405+;Right=chr18:30916287-30916646+;Distance=317;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001143826:+;NM_001143827:+;NM_014268:+;NR_026570:+;RightGenes=NM_001143826:+;NM_001143827:+;NM_014268:+;NR_026570:+;XRef=rs72399344 (chr18:30915970-30916287);Frequency=0.47
chr18	CG	SV	30915970	30916405	12	+	.	ID=1941;Type=deletion;Left=chr18:30915970-30916405;Right=chr18:30916287-30916646
chr18	CG	SV	30916287	30916646	12	+	.	ID=1941;Type=deletion;Left=chr18:30915970-30916405;Right=chr18:30916287-30916646
chr18	CG	SV	33560058	33561079	221	.	.	ID=1940;Type=deletion;Left=chr18:33560058-33560536+;Right=chr18:33560630-33561079+;Distance=572;DiscordantMatePairAlignments=221;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72412845 (chr18:33560068-33560630);Frequency=0.71
chr18	CG	SV	33560058	33560536	221	+	.	ID=1940;Type=deletion;Left=chr18:33560058-33560536;Right=chr18:33560630-33561079
chr18	CG	SV	33560630	33561079	221	+	.	ID=1940;Type=deletion;Left=chr18:33560058-33560536;Right=chr18:33560630-33561079
chr18	CG	SV	33569634	33570531	24	.	.	ID=1939;Type=deletion;Left=chr18:33569634-33569975+;Right=chr18:33569952-33570531+;Distance=318;DiscordantMatePairAlignments=24;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=MER5B:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs34847719 (chr18:33569634-33569952);Frequency=0.71
chr18	CG	SV	33569634	33569975	24	+	.	ID=1939;Type=deletion;Left=chr18:33569634-33569975;Right=chr18:33569952-33570531
chr18	CG	SV	33569952	33570531	24	+	.	ID=1939;Type=deletion;Left=chr18:33569634-33569975;Right=chr18:33569952-33570531
chr18	CG	SV	35315644	35316484	49	.	.	ID=1938;Type=deletion;Left=chr18:35315644-35316098+;Right=chr18:35315974-35316484+;Distance=330;DiscordantMatePairAlignments=49;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NR_024391:-;RightGenes=NR_024391:-;XRef=rs35059019 (chr18:35315644-35315974);Frequency=1.00
chr18	CG	SV	35315644	35316098	49	+	.	ID=1938;Type=deletion;Left=chr18:35315644-35316098;Right=chr18:35315974-35316484
chr18	CG	SV	35315974	35316484	49	+	.	ID=1938;Type=deletion;Left=chr18:35315644-35316098;Right=chr18:35315974-35316484
chr18	CG	SV	36513891	36521174	111	.	.	ID=1937;Type=deletion;Left=chr18:36513891-36514315+;Right=chr18:36520748-36521174+;Distance=6857;DiscordantMatePairAlignments=111;LeftRepeat=MIRb:SINE:MIR;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr18	CG	SV	36513891	36514315	111	+	.	ID=1937;Type=deletion;Left=chr18:36513891-36514315;Right=chr18:36520748-36521174
chr18	CG	SV	36520748	36521174	111	+	.	ID=1937;Type=deletion;Left=chr18:36513891-36514315;Right=chr18:36520748-36521174
chr18	CG	SV	39285549	39287051	143	.	.	ID=1935;Type=deletion;Left=chr18:39285549-39285956+;Right=chr18:39286533-39287051+;Distance=984;DiscordantMatePairAlignments=143;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67075944 (chr18:39285550-39286534);Frequency=0.88
chr18	CG	SV	39285549	39285956	143	+	.	ID=1935;Type=deletion;Left=chr18:39285549-39285956;Right=chr18:39286533-39287051
chr18	CG	SV	39286533	39287051	143	+	.	ID=1935;Type=deletion;Left=chr18:39285549-39285956;Right=chr18:39286533-39287051
chr18	CG	SV	41515012	41515854	75	.	.	ID=1933;Type=deletion;Left=chr18:41515012-41515557+;Right=chr18:41515337-41515854+;Distance=325;DiscordantMatePairAlignments=75;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_007163:+;RightGenes=NM_007163:+;XRef=rs67908950 (chr18:41515012-41515337);Frequency=1.00
chr18	CG	SV	41515012	41515557	75	+	.	ID=1933;Type=deletion;Left=chr18:41515012-41515557;Right=chr18:41515337-41515854
chr18	CG	SV	41515337	41515854	75	+	.	ID=1933;Type=deletion;Left=chr18:41515012-41515557;Right=chr18:41515337-41515854
chr18	CG	SV	42592431	42593280	51	.	.	ID=1931;Type=deletion;Left=chr18:42592431-42592871+;Right=chr18:42592768-42593280+;Distance=337;DiscordantMatePairAlignments=51;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6146302 (chr18:42592431-42592768);Frequency=0.94
chr18	CG	SV	42592431	42592871	51	+	.	ID=1931;Type=deletion;Left=chr18:42592431-42592871;Right=chr18:42592768-42593280
chr18	CG	SV	42592768	42593280	51	+	.	ID=1931;Type=deletion;Left=chr18:42592431-42592871;Right=chr18:42592768-42593280
chr18	CG	SV	44250160	44250937	22	.	.	ID=1930;Type=deletion;Left=chr18:44250160-44250613+;Right=chr18:44250477-44250937+;Distance=317;DiscordantMatePairAlignments=22;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs6146307 (chr18:44250160-44250477);Frequency=1.00
chr18	CG	SV	44250160	44250613	22	+	.	ID=1930;Type=deletion;Left=chr18:44250160-44250613;Right=chr18:44250477-44250937
chr18	CG	SV	44250477	44250937	22	+	.	ID=1930;Type=deletion;Left=chr18:44250160-44250613;Right=chr18:44250477-44250937
chr18	CG	SV	45273866	45274620	15	.	.	ID=1929;Type=deletion;Left=chr18:45273866-45274336+;Right=chr18:45274188-45274620+;Distance=322;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs33917211 (chr18:45273849-45274171);Frequency=0.82
chr18	CG	SV	45273866	45274336	15	+	.	ID=1929;Type=deletion;Left=chr18:45273866-45274336;Right=chr18:45274188-45274620
chr18	CG	SV	45274188	45274620	15	+	.	ID=1929;Type=deletion;Left=chr18:45273866-45274336;Right=chr18:45274188-45274620
chr18	CG	SV	45948971	45952850	47	.	.	ID=1928;Type=deletion;Left=chr18:45948971-45949450+;Right=chr18:45952384-45952850+;Distance=3413;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=;LeftGenes=NM_001080467:-;RightGenes=NM_001080467:-;XRef=rs72192652 (chr18:45948971-45952380);Frequency=0.65
chr18	CG	SV	45948971	45949450	47	+	.	ID=1928;Type=deletion;Left=chr18:45948971-45949450;Right=chr18:45952384-45952850
chr18	CG	SV	45952384	45952850	47	+	.	ID=1928;Type=deletion;Left=chr18:45948971-45949450;Right=chr18:45952384-45952850
chr18	CG	SV	48573026	48573228	12	.	.	ID=803;Type=tandem-duplication;Left=chr18:48573026-48573118-;Right=chr18:48573145-48573228-;Distance=110;DiscordantMatePairAlignments=12;LeftRepeat=(CATTC)n:Simple_repeat:Simple_repeat;RightRepeat=HUERS-P3b:LTR:ERV1;LeftGenes=NM_005215:+;RightGenes=NM_005215:+;XRef=;Frequency=0.71
chr18	CG	SV	48573026	48573118	12	-	.	ID=803;Type=tandem-duplication;Left=chr18:48573026-48573118;Right=chr18:48573145-48573228
chr18	CG	SV	48573145	48573228	12	-	.	ID=803;Type=tandem-duplication;Left=chr18:48573026-48573118;Right=chr18:48573145-48573228
chr18	CG	SV	48716565	48717445	129	.	.	ID=1927;Type=deletion;Left=chr18:48716565-48716999+;Right=chr18:48717030-48717445+;Distance=465;DiscordantMatePairAlignments=129;LeftRepeat=;RightRepeat=;LeftGenes=NM_005215:+;RightGenes=NM_005215:+;XRef=rs72465148 (chr18:48716563-48717028);Frequency=0.53
chr18	CG	SV	48716565	48716999	129	+	.	ID=1927;Type=deletion;Left=chr18:48716565-48716999;Right=chr18:48717030-48717445
chr18	CG	SV	48717030	48717445	129	+	.	ID=1927;Type=deletion;Left=chr18:48716565-48716999;Right=chr18:48717030-48717445
chr18	CG	SV	48742063	48743662	45	.	.	ID=1926;Type=deletion;Left=chr18:48742063-48742439+;Right=chr18:48743491-48743662+;Distance=1428;DiscordantMatePairAlignments=45;LeftRepeat=L1PA3:LINE:L1;RightRepeat=;LeftGenes=NM_005215:+;RightGenes=NM_005215:+;XRef=rs67593807 (chr18:48742063-48743491);Frequency=1.00
chr18	CG	SV	48742063	48742439	45	+	.	ID=1926;Type=deletion;Left=chr18:48742063-48742439;Right=chr18:48743491-48743662
chr18	CG	SV	48743491	48743662	45	+	.	ID=1926;Type=deletion;Left=chr18:48742063-48742439;Right=chr18:48743491-48743662
chr18	CG	SV	49179985	49180774	23	.	.	ID=1925;Type=deletion;Left=chr18:49179985-49180461+;Right=chr18:49180308-49180774+;Distance=323;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=;LeftGenes=NM_005215:+;RightGenes=NM_005215:+;XRef=rs71946978 (chr18:49179975-49180298);Frequency=1.00
chr18	CG	SV	49179985	49180461	23	+	.	ID=1925;Type=deletion;Left=chr18:49179985-49180461;Right=chr18:49180308-49180774
chr18	CG	SV	49180308	49180774	23	+	.	ID=1925;Type=deletion;Left=chr18:49179985-49180461;Right=chr18:49180308-49180774
chr18	CG	SV	49390403	49392238	54	.	.	ID=1924;Type=deletion;Left=chr18:49390403-49390823+;Right=chr18:49391772-49392238+;Distance=1369;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr18	CG	SV	49390403	49390823	54	+	.	ID=1924;Type=deletion;Left=chr18:49390403-49390823;Right=chr18:49391772-49392238
chr18	CG	SV	49391772	49392238	54	+	.	ID=1924;Type=deletion;Left=chr18:49390403-49390823;Right=chr18:49391772-49392238
chr18	CG	SV	49459967	49465011	54	.	.	ID=1923;Type=deletion;Left=chr18:49459967-49460400+;Right=chr18:49464572-49465011+;Distance=4605;DiscordantMatePairAlignments=54;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr18	CG	SV	49459967	49460400	54	+	.	ID=1923;Type=deletion;Left=chr18:49459967-49460400;Right=chr18:49464572-49465011
chr18	CG	SV	49464572	49465011	54	+	.	ID=1923;Type=deletion;Left=chr18:49459967-49460400;Right=chr18:49464572-49465011
chr18	CG	SV	50206965	50211444	280	.	.	ID=1922;Type=deletion;Left=chr18:50206965-50207422+;Right=chr18:50210961-50211444+;Distance=3996;DiscordantMatePairAlignments=280;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67019264 (chr18:50206966-50210962);Frequency=0.94
chr18	CG	SV	50206965	50207422	280	+	.	ID=1922;Type=deletion;Left=chr18:50206965-50207422;Right=chr18:50210961-50211444
chr18	CG	SV	50210961	50211444	280	+	.	ID=1922;Type=deletion;Left=chr18:50206965-50207422;Right=chr18:50210961-50211444
chr18	CG	SV	52644034	52644504	17	.	.	ID=802;Type=tandem-duplication;Left=chr18:52644034-52644285-;Right=chr18:52644256-52644504-;Distance=219;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=;LeftGenes=NM_015285:+;NM_052834:+;RightGenes=NM_015285:+;NM_052834:+;XRef=;Frequency=0.12
chr18	CG	SV	52644034	52644285	17	-	.	ID=802;Type=tandem-duplication;Left=chr18:52644034-52644285;Right=chr18:52644256-52644504
chr18	CG	SV	52644256	52644504	17	-	.	ID=802;Type=tandem-duplication;Left=chr18:52644034-52644285;Right=chr18:52644256-52644504
chr18	CG	SV	53097735	53100227	303	.	.	ID=1921;Type=deletion;Left=chr18:53097735-53098194+;Right=chr18:53099715-53100227+;Distance=1980;DiscordantMatePairAlignments=303;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66803181 (chr18:53097735-53099715);Frequency=1.00
chr18	CG	SV	53097735	53098194	303	+	.	ID=1921;Type=deletion;Left=chr18:53097735-53098194;Right=chr18:53099715-53100227
chr18	CG	SV	53099715	53100227	303	+	.	ID=1921;Type=deletion;Left=chr18:53097735-53098194;Right=chr18:53099715-53100227
chr18	CG	SV	53822134	53822921	20	.	.	ID=1919;Type=deletion;Left=chr18:53822134-53822700+;Right=chr18:53822440-53822921+;Distance=306;DiscordantMatePairAlignments=20;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35801931 (chr18:53822134-53822440);Frequency=1.00
chr18	CG	SV	53822134	53822700	20	+	.	ID=1919;Type=deletion;Left=chr18:53822134-53822700;Right=chr18:53822440-53822921
chr18	CG	SV	53822440	53822921	20	+	.	ID=1919;Type=deletion;Left=chr18:53822134-53822700;Right=chr18:53822440-53822921
chr18	CG	SV	53952587	53953332	11	.	.	ID=1918;Type=deletion;Left=chr18:53952587-53953074+;Right=chr18:53952913-53953332+;Distance=326;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=;LeftGenes=NM_001144964:+;NM_001144967:+;NM_015277:+;RightGenes=NM_001144964:+;NM_001144967:+;NM_015277:+;XRef=rs10527442 (chr18:53952575-53952901);Frequency=1.00
chr18	CG	SV	53952587	53953074	11	+	.	ID=1918;Type=deletion;Left=chr18:53952587-53953074;Right=chr18:53952913-53953332
chr18	CG	SV	53952913	53953332	11	+	.	ID=1918;Type=deletion;Left=chr18:53952587-53953074;Right=chr18:53952913-53953332
chr18	CG	SV	57823763	57825503	12	.	.	ID=1916;Type=deletion;Left=chr18:57823763-57824302+;Right=chr18:57825222-57825503+;Distance=1459;DiscordantMatePairAlignments=12;LeftRepeat=THE1A:LTR:MaLR;RightRepeat=THE1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr18	CG	SV	57823763	57824302	12	+	.	ID=1916;Type=deletion;Left=chr18:57823763-57824302;Right=chr18:57825222-57825503
chr18	CG	SV	57825222	57825503	12	+	.	ID=1916;Type=deletion;Left=chr18:57823763-57824302;Right=chr18:57825222-57825503
chr18	CG	SV	59036645	59037041	33	.	.	ID=801;Type=tandem-duplication;Left=chr18:59036645-59036817-;Right=chr18:59036822-59037041-;Distance=224;DiscordantMatePairAlignments=33;LeftRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Tandem period 17;RightRepeat=;LeftGenes=NM_000633:-;RightGenes=NM_000633:-;XRef=;Frequency=1.00
chr18	CG	SV	59036645	59036817	33	-	.	ID=801;Type=tandem-duplication;Left=chr18:59036645-59036817;Right=chr18:59036822-59037041
chr18	CG	SV	59036822	59037041	33	-	.	ID=801;Type=tandem-duplication;Left=chr18:59036645-59036817;Right=chr18:59036822-59037041
chr18	CG	SV	61684234	61685019	51	.	.	ID=1914;Type=deletion;Left=chr18:61684234-61684687+;Right=chr18:61684578-61685019+;Distance=344;DiscordantMatePairAlignments=51;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_004361:+;NM_033646:+;RightGenes=NM_004361:+;NM_033646:+;XRef=rs66696953 (chr18:61684218-61684562);Frequency=1.00
chr18	CG	SV	61684234	61684687	51	+	.	ID=1914;Type=deletion;Left=chr18:61684234-61684687;Right=chr18:61684578-61685019
chr18	CG	SV	61684578	61685019	51	+	.	ID=1914;Type=deletion;Left=chr18:61684234-61684687;Right=chr18:61684578-61685019
chr18	CG	SV	61917853	61920687	39	.	.	ID=1913;Type=deletion;Left=chr18:61917853-61918264+;Right=chr18:61920186-61920687+;Distance=2333;DiscordantMatePairAlignments=39;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67314224 (chr18:61917853-61920186);Frequency=0.82
chr18	CG	SV	61917853	61918264	39	+	.	ID=1913;Type=deletion;Left=chr18:61917853-61918264;Right=chr18:61920186-61920687
chr18	CG	SV	61920186	61920687	39	+	.	ID=1913;Type=deletion;Left=chr18:61917853-61918264;Right=chr18:61920186-61920687
chr18	CG	SV	66997709	66998403	30	.	.	ID=1910;Type=complex;Left=chr18:66997709-66998184+;Right=chr18:66998043-66998403+;Distance=334;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=Tandem A;LeftGenes=;RightGenes=;XRef=rs10530670 (chr18:66997704-66998038);Frequency=0.88
chr18	CG	SV	66997709	66998184	30	+	.	ID=1910;Type=complex;Left=chr18:66997709-66998184;Right=chr18:66998043-66998403
chr18	CG	SV	66998043	66998403	30	+	.	ID=1910;Type=complex;Left=chr18:66997709-66998184;Right=chr18:66998043-66998403
chr18	CG	SV	66997721	66998516	28	.	.	ID=1911;Type=complex;Left=chr18:66997721-66998071+;Right=chr18:66998055-66998516+;Distance=334;DiscordantMatePairAlignments=28;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10705382 (chr18:66997721-66998055);Frequency=0.88
chr18	CG	SV	66997721	66998071	28	+	.	ID=1911;Type=complex;Left=chr18:66997721-66998071;Right=chr18:66998055-66998516
chr18	CG	SV	66998055	66998516	28	+	.	ID=1911;Type=complex;Left=chr18:66997721-66998071;Right=chr18:66998055-66998516
chr18	CG	SV	69153643	69155435	13	.	.	ID=1908;Type=deletion;Left=chr18:69153643-69153998+;Right=chr18:69155235-69155435+;Distance=1592;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;Tandem A;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	69153643	69153998	13	+	.	ID=1908;Type=deletion;Left=chr18:69153643-69153998;Right=chr18:69155235-69155435
chr18	CG	SV	69155235	69155435	13	+	.	ID=1908;Type=deletion;Left=chr18:69153643-69153998;Right=chr18:69155235-69155435
chr18	CG	SV	69424394	69425095	18	.	.	ID=1907;Type=deletion;Left=chr18:69424394-69424861+;Right=chr18:69424715-69425095+;Distance=321;DiscordantMatePairAlignments=18;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=L1MC3:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72310325 (chr18:69424376-69424697);Frequency=1.00
chr18	CG	SV	69424394	69424861	18	+	.	ID=1907;Type=deletion;Left=chr18:69424394-69424861;Right=chr18:69424715-69425095
chr18	CG	SV	69424715	69425095	18	+	.	ID=1907;Type=deletion;Left=chr18:69424394-69424861;Right=chr18:69424715-69425095
chr18	CG	SV	70303422	70304210	48	.	.	ID=1905;Type=deletion;Left=chr18:70303422-70303924+;Right=chr18:70303762-70304210+;Distance=340;DiscordantMatePairAlignments=48;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10526978 (chr18:70303408-70303748);Frequency=1.00
chr18	CG	SV	70303422	70303924	48	+	.	ID=1905;Type=deletion;Left=chr18:70303422-70303924;Right=chr18:70303762-70304210
chr18	CG	SV	70303762	70304210	48	+	.	ID=1905;Type=deletion;Left=chr18:70303422-70303924;Right=chr18:70303762-70304210
chr18	CG	SV	71699009	71699729	20	.	.	ID=1904;Type=deletion;Left=chr18:71699009-71699472+;Right=chr18:71699334-71699729+;Distance=325;DiscordantMatePairAlignments=20;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10705591 (chr18:71698994-71699319);Frequency=0.53
chr18	CG	SV	71699009	71699472	20	+	.	ID=1904;Type=deletion;Left=chr18:71699009-71699472;Right=chr18:71699334-71699729
chr18	CG	SV	71699334	71699729	20	+	.	ID=1904;Type=deletion;Left=chr18:71699009-71699472;Right=chr18:71699334-71699729
chr18	CG	SV	72030656	72031295	11	.	.	ID=1903;Type=deletion;Left=chr18:72030656-72031170+;Right=chr18:72031028-72031295+;Distance=372;DiscordantMatePairAlignments=11;LeftRepeat=LTR1B:LTR:ERV1;RightRepeat=LTR1B:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr18	CG	SV	72030656	72031170	11	+	.	ID=1903;Type=deletion;Left=chr18:72030656-72031170;Right=chr18:72031028-72031295
chr18	CG	SV	72031028	72031295	11	+	.	ID=1903;Type=deletion;Left=chr18:72030656-72031170;Right=chr18:72031028-72031295
chr18	CG	SV	72476184	72477385	90	.	.	ID=1901;Type=deletion;Left=chr18:72476184-72476702+;Right=chr18:72476985-72477385+;Distance=801;DiscordantMatePairAlignments=90;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr18	CG	SV	72476184	72476702	90	+	.	ID=1901;Type=deletion;Left=chr18:72476184-72476702;Right=chr18:72476985-72477385
chr18	CG	SV	72476985	72477385	90	+	.	ID=1901;Type=deletion;Left=chr18:72476184-72476702;Right=chr18:72476985-72477385
chr18	CG	SV	72898774	72899478	13	.	.	ID=1899;Type=deletion;Left=chr18:72898774-72899266+;Right=chr18:72899075-72899478+;Distance=301;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_001025100:-;NM_001025101:-;RightGenes=NM_001025100:-;NM_001025101:-;XRef=rs67845919 (chr18:72898758-72899059);Frequency=0.82
chr18	CG	SV	72898774	72899266	13	+	.	ID=1899;Type=deletion;Left=chr18:72898774-72899266;Right=chr18:72899075-72899478
chr18	CG	SV	72899075	72899478	13	+	.	ID=1899;Type=deletion;Left=chr18:72898774-72899266;Right=chr18:72899075-72899478
chr18	CG	SV	73395986	73397584	178	.	.	ID=1898;Type=deletion;Left=chr18:73395986-73396430+;Right=chr18:73397148-73397584+;Distance=1162;DiscordantMatePairAlignments=178;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66626305 (chr18:73395985-73397147);Frequency=0.82
chr18	CG	SV	73395986	73396430	178	+	.	ID=1898;Type=deletion;Left=chr18:73395986-73396430;Right=chr18:73397148-73397584
chr18	CG	SV	73397148	73397584	178	+	.	ID=1898;Type=deletion;Left=chr18:73395986-73396430;Right=chr18:73397148-73397584
chr18	CG	SV	74303116	74304765	62	.	.	ID=1895;Type=deletion;Left=chr18:74303116-74303506+;Right=chr18:74304335-74304765+;Distance=1219;DiscordantMatePairAlignments=62;LeftRepeat=L1MEd:LINE:L1;Self chain;RightRepeat=L1MEd:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71773736 (chr18:74303109-74304328);Frequency=0.82
chr18	CG	SV	74303116	74303506	62	+	.	ID=1895;Type=deletion;Left=chr18:74303116-74303506;Right=chr18:74304335-74304765
chr18	CG	SV	74304335	74304765	62	+	.	ID=1895;Type=deletion;Left=chr18:74303116-74303506;Right=chr18:74304335-74304765
chr18	CG	SV	74439442	74440017	16	.	.	ID=1894;Type=deletion;Left=chr18:74439442-74439960+;Right=chr18:74439770-74440017+;Distance=328;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 74;RightRepeat=Self chain;Tandem period 15;Tandem period 23;Tandem period 8;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	74439442	74439960	16	+	.	ID=1894;Type=deletion;Left=chr18:74439442-74439960;Right=chr18:74439770-74440017
chr18	CG	SV	74439770	74440017	16	+	.	ID=1894;Type=deletion;Left=chr18:74439442-74439960;Right=chr18:74439770-74440017
chr18	CG	SV	74474708	74475910	74	.	.	ID=1893;Type=deletion;Left=chr18:74474708-74475206+;Right=chr18:74475632-74475910+;Distance=924;DiscordantMatePairAlignments=74;LeftRepeat=Self chain;Tandem period 28;RightRepeat=Self chain;Tandem period 28;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr18	CG	SV	74474708	74475206	74	+	.	ID=1893;Type=deletion;Left=chr18:74474708-74475206;Right=chr18:74475632-74475910
chr18	CG	SV	74475632	74475910	74	+	.	ID=1893;Type=deletion;Left=chr18:74474708-74475206;Right=chr18:74475632-74475910
chr18	CG	SV	74763476	74767688	52	.	.	ID=1891;Type=deletion;Left=chr18:74763476-74763855+;Right=chr18:74767312-74767688+;Distance=3836;DiscordantMatePairAlignments=52;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72010801 (chr18:74763476-74767311);Frequency=0.29
chr18	CG	SV	74763476	74763855	52	+	.	ID=1891;Type=deletion;Left=chr18:74763476-74763855;Right=chr18:74767312-74767688
chr18	CG	SV	74767312	74767688	52	+	.	ID=1891;Type=deletion;Left=chr18:74763476-74763855;Right=chr18:74767312-74767688
chr18	CG	SV	75061599	75061767	346	.	.	ID=800;Type=tandem-duplication;Left=chr18:75061599-75061691-;Right=chr18:75061667-75061767-;Distance=76;DiscordantMatePairAlignments=346;LeftRepeat=Self chain;Tandem period 33;RightRepeat=G-rich:Low_complexity:Low_complexity;Self chain;LeftGenes=NM_198531:+;RightGenes=NM_198531:+;XRef=;Frequency=1.00
chr18	CG	SV	75061599	75061691	346	-	.	ID=800;Type=tandem-duplication;Left=chr18:75061599-75061691;Right=chr18:75061667-75061767
chr18	CG	SV	75061667	75061767	346	-	.	ID=800;Type=tandem-duplication;Left=chr18:75061599-75061691;Right=chr18:75061667-75061767
chr18	CG	SV	75411051	75413530	100	.	.	ID=1890;Type=deletion;Left=chr18:75411051-75411563+;Right=chr18:75413087-75413530+;Distance=2036;DiscordantMatePairAlignments=100;LeftRepeat=Self chain;Tandem period 54;RightRepeat=Self chain;Tandem period 54;LeftGenes=;RightGenes=;XRef=rs71172180 (chr18:75410938-75413079);Frequency=0.59
chr18	CG	SV	75411051	75411563	100	+	.	ID=1890;Type=deletion;Left=chr18:75411051-75411563;Right=chr18:75413087-75413530
chr18	CG	SV	75413087	75413530	100	+	.	ID=1890;Type=deletion;Left=chr18:75411051-75411563;Right=chr18:75413087-75413530
chr18	CG	SV	75600860	75601554	44	.	.	ID=1889;Type=deletion;Left=chr18:75600860-75601333+;Right=chr18:75601190-75601554+;Distance=330;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;Tandem period 30;RightRepeat=Self chain;Tandem period 30;LeftGenes=NM_004715:+;NM_048368:+;RightGenes=NM_004715:+;NM_048368:+;XRef=rs72233585 (chr18:75600764-75601124);Frequency=1.00
chr18	CG	SV	75600860	75601333	44	+	.	ID=1889;Type=deletion;Left=chr18:75600860-75601333;Right=chr18:75601190-75601554
chr18	CG	SV	75601190	75601554	44	+	.	ID=1889;Type=deletion;Left=chr18:75600860-75601333;Right=chr18:75601190-75601554
chr19	CG	SV	966460	966995	27	.	.	ID=796;Type=tandem-duplication;Left=chr19:966460-966732-;Right=chr19:966714-966995-;Distance=263;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001033026:-;NM_033420:-;RightGenes=NM_001033026:-;NM_033420:-;XRef=;Frequency=0.06
chr19	CG	SV	966460	966732	27	-	.	ID=796;Type=tandem-duplication;Left=chr19:966460-966732;Right=chr19:966714-966995
chr19	CG	SV	966714	966995	27	-	.	ID=796;Type=tandem-duplication;Left=chr19:966460-966732;Right=chr19:966714-966995
chr19	CG	SV	980197	980710	18	.	.	ID=1887;Type=deletion;Left=chr19:980197-980650+;Right=chr19:980596-980710+;Distance=399;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;Tandem period 159;Tandem period 40;RightRepeat=Self chain;LeftGenes=NM_004368:+;NM_201277:+;RightGenes=NM_004368:+;NM_201277:+;XRef=;Frequency=0.65
chr19	CG	SV	980197	980650	18	+	.	ID=1887;Type=deletion;Left=chr19:980197-980650;Right=chr19:980596-980710
chr19	CG	SV	980596	980710	18	+	.	ID=1887;Type=deletion;Left=chr19:980197-980650;Right=chr19:980596-980710
chr19	CG	SV	1092836	1093236	32	.	.	ID=795;Type=tandem-duplication;Left=chr19:1092836-1093020-;Right=chr19:1093063-1093236-;Distance=216;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;Tandem period 30;RightRepeat=Self chain;Tandem period 13;Tandem period 30;LeftGenes=NM_014963:-;RightGenes=NM_014963:-;XRef=;Frequency=1.00
chr19	CG	SV	1092836	1093020	32	-	.	ID=795;Type=tandem-duplication;Left=chr19:1092836-1093020;Right=chr19:1093063-1093236
chr19	CG	SV	1093063	1093236	32	-	.	ID=795;Type=tandem-duplication;Left=chr19:1092836-1093020;Right=chr19:1093063-1093236
chr19	CG	SV	4569612	4571074	137	.	.	ID=1880;Type=deletion;Left=chr19:4569612-4570035+;Right=chr19:4570596-4571074+;Distance=984;DiscordantMatePairAlignments=137;LeftRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 17;RightRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 17;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr19	CG	SV	4569612	4570035	137	+	.	ID=1880;Type=deletion;Left=chr19:4569612-4570035;Right=chr19:4570596-4571074
chr19	CG	SV	4570596	4571074	137	+	.	ID=1880;Type=deletion;Left=chr19:4569612-4570035;Right=chr19:4570596-4571074
chr19	CG	SV	4690338	4690558	17	.	.	ID=4260;Type=probable-inversion;Left=chr19:4690338-4690651+;Right=chr19:4690416-4690558-;Distance=220;DiscordantMatePairAlignments=17;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr19	CG	SV	4690338	4690651	17	+	.	ID=4260;Type=probable-inversion;Left=chr19:4690338-4690651;Right=chr19:4690416-4690558
chr19	CG	SV	4690416	4690558	17	+	.	ID=4260;Type=probable-inversion;Left=chr19:4690338-4690651;Right=chr19:4690416-4690558
chr19	CG	SV	7209364	7210554	36	.	.	ID=1878;Type=deletion;Left=chr19:7209364-7209676+;Right=chr19:7210294-7210554+;Distance=930;DiscordantMatePairAlignments=36;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=NM_000208:-;NM_001079817:-;RightGenes=NM_000208:-;NM_001079817:-;XRef=;Frequency=0.12
chr19	CG	SV	7209364	7209676	36	+	.	ID=1878;Type=deletion;Left=chr19:7209364-7209676;Right=chr19:7210294-7210554
chr19	CG	SV	7210294	7210554	36	+	.	ID=1878;Type=deletion;Left=chr19:7209364-7209676;Right=chr19:7210294-7210554
chr19	CG	SV	8317740	8320899	13	.	.	ID=1876;Type=deletion;Left=chr19:8317740-8318099+;Right=chr19:8320702-8320899+;Distance=2962;DiscordantMatePairAlignments=13;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=(GGAA)n:Simple_repeat:Simple_repeat;Self chain;Tandem AAGG;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr19	CG	SV	8317740	8318099	13	+	.	ID=1876;Type=deletion;Left=chr19:8317740-8318099;Right=chr19:8320702-8320899
chr19	CG	SV	8320702	8320899	13	+	.	ID=1876;Type=deletion;Left=chr19:8317740-8318099;Right=chr19:8320702-8320899
chr19	CG	SV	8420425	8421200	51	.	.	ID=1875;Type=deletion;Left=chr19:8420425-8420900+;Right=chr19:8420732-8421200+;Distance=307;DiscordantMatePairAlignments=51;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_005968:+;NM_031203:+;RightGenes=NM_005968:+;NM_031203:+;XRef=rs71166204 (chr19:8420425-8420732);Frequency=1.00
chr19	CG	SV	8420425	8420900	51	+	.	ID=1875;Type=deletion;Left=chr19:8420425-8420900;Right=chr19:8420732-8421200
chr19	CG	SV	8420732	8421200	51	+	.	ID=1875;Type=deletion;Left=chr19:8420425-8420900;Right=chr19:8420732-8421200
chr19	CG	SV	9101118	14088676	79	.	.	ID=4259;Type=probable-inversion;Left=chr19:9101118-9101400+;Right=chr19:14088185-14088676-;Distance=4987558;DiscordantMatePairAlignments=79;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_002730:-;XRef=;Frequency=0.00
chr19	CG	SV	9101118	9101400	79	+	.	ID=4259;Type=probable-inversion;Left=chr19:9101118-9101400;Right=chr19:14088185-14088676
chr19	CG	SV	14088185	14088676	79	+	.	ID=4259;Type=probable-inversion;Left=chr19:9101118-9101400;Right=chr19:14088185-14088676
chr19	CG	SV	13125939	54305991	22	.	.	ID=67;Type=complex;Left=chr19:13125939-13126349-;Right=chr19:54305570-54305991+;Distance=41179221;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_004907:+;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	13125939	13126349	22	-	.	ID=67;Type=complex;Left=chr19:13125939-13126349;Right=chr19:54305570-54305991
chr19	CG	SV	54305570	54305991	22	-	.	ID=67;Type=complex;Left=chr19:13125939-13126349;Right=chr19:54305570-54305991
chr19	CG	SV	14492663	60422800	16	.	.	ID=4252;Type=probable-inversion;Left=chr19:14492663-14493066+;Right=chr19:60422355-60422800-;Distance=45930137;DiscordantMatePairAlignments=16;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	14492663	14493066	16	+	.	ID=4252;Type=probable-inversion;Left=chr19:14492663-14493066;Right=chr19:60422355-60422800
chr19	CG	SV	60422355	60422800	16	+	.	ID=4252;Type=probable-inversion;Left=chr19:14492663-14493066;Right=chr19:60422355-60422800
chr19	CG	SV	14593345	14595604	13	.	.	ID=1871;Type=deletion;Left=chr19:14593345-14593442+;Right=chr19:14595142-14595604+;Distance=1797;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=AluJ/FLAM:SINE:Alu;Self chain;LeftGenes=NM_032571:-;RightGenes=NM_032571:-;XRef=rs71171910 (chr19:14593345-14595142);Frequency=0.65
chr19	CG	SV	14593345	14593442	13	+	.	ID=1871;Type=deletion;Left=chr19:14593345-14593442;Right=chr19:14595142-14595604
chr19	CG	SV	14595142	14595604	13	+	.	ID=1871;Type=deletion;Left=chr19:14593345-14593442;Right=chr19:14595142-14595604
chr19	CG	SV	14907392	14910942	111	.	.	ID=1870;Type=deletion;Left=chr19:14907392-14907771+;Right=chr19:14910478-14910942+;Distance=3086;DiscordantMatePairAlignments=111;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr19	CG	SV	14907392	14907771	111	+	.	ID=1870;Type=deletion;Left=chr19:14907392-14907771;Right=chr19:14910478-14910942
chr19	CG	SV	14910478	14910942	111	+	.	ID=1870;Type=deletion;Left=chr19:14907392-14907771;Right=chr19:14910478-14910942
chr19	CG	SV	17303366	17311557	12	.	.	ID=791;Type=tandem-duplication;Left=chr19:17303366-17303753-;Right=chr19:17311356-17311557-;Distance=7804;DiscordantMatePairAlignments=12;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_020959:-;RightGenes=NM_001128855:+;NM_032620:+;NM_133644:+;XRef=;Frequency=0.00
chr19	CG	SV	17303366	17303753	12	-	.	ID=791;Type=tandem-duplication;Left=chr19:17303366-17303753;Right=chr19:17311356-17311557
chr19	CG	SV	17311356	17311557	12	-	.	ID=791;Type=tandem-duplication;Left=chr19:17303366-17303753;Right=chr19:17311356-17311557
chr19	CG	SV	20377009	20380211	23	.	.	ID=1865;Type=deletion;Left=chr19:20377009-20377431+;Right=chr19:20379861-20380211+;Distance=2852;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;RightRepeat=L1MB2:LINE:L1;Self chain;LeftGenes=NM_001039884:-;RightGenes=NM_001039884:-;XRef=rs72102339 (chr19:20377009-20379861);Frequency=0.88
chr19	CG	SV	20377009	20377431	23	+	.	ID=1865;Type=deletion;Left=chr19:20377009-20377431;Right=chr19:20379861-20380211
chr19	CG	SV	20379861	20380211	23	+	.	ID=1865;Type=deletion;Left=chr19:20377009-20377431;Right=chr19:20379861-20380211
chr19	CG	SV	21542581	21543963	32	.	.	ID=1864;Type=deletion;Left=chr19:21542581-21542898+;Right=chr19:21543549-21543963+;Distance=968;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;RightRepeat=LTR5_Hs:LTR:ERVK;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr19	CG	SV	21542581	21542898	32	+	.	ID=1864;Type=deletion;Left=chr19:21542581-21542898;Right=chr19:21543549-21543963
chr19	CG	SV	21543549	21543963	32	+	.	ID=1864;Type=deletion;Left=chr19:21542581-21542898;Right=chr19:21543549-21543963
chr19	CG	SV	23727398	23728242	12	.	.	ID=785;Type=tandem-duplication;Left=chr19:23727398-23727778-;Right=chr19:23728117-23728242-;Distance=464;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_138286:-;RightGenes=NM_138286:-;XRef=;Frequency=1.00
chr19	CG	SV	23727398	23727778	12	-	.	ID=785;Type=tandem-duplication;Left=chr19:23727398-23727778;Right=chr19:23728117-23728242
chr19	CG	SV	23728117	23728242	12	-	.	ID=785;Type=tandem-duplication;Left=chr19:23727398-23727778;Right=chr19:23728117-23728242
chr19	CG	SV	34642026	34648462	168	.	.	ID=1834;Type=deletion;Left=chr19:34642026-34642475+;Right=chr19:34648009-34648462+;Distance=5983;DiscordantMatePairAlignments=168;LeftRepeat=HAL1b:LINE:L1;Self chain;RightRepeat=HAL1b:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs72413604 (chr19:34642037-34648020);Frequency=0.59
chr19	CG	SV	34642026	34642475	168	+	.	ID=1834;Type=deletion;Left=chr19:34642026-34642475;Right=chr19:34648009-34648462
chr19	CG	SV	34648009	34648462	168	+	.	ID=1834;Type=deletion;Left=chr19:34642026-34642475;Right=chr19:34648009-34648462
chr19	CG	SV	35039066	36521454	43	.	.	ID=1832;Type=deletion;Left=chr19:35039066-35039498+;Right=chr19:36520988-36521454+;Distance=1481922;DiscordantMatePairAlignments=43;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_020856:-;XRef=;Frequency=0.00
chr19	CG	SV	35039066	35039498	43	+	.	ID=1832;Type=deletion;Left=chr19:35039066-35039498;Right=chr19:36520988-36521454
chr19	CG	SV	36520988	36521454	43	+	.	ID=1832;Type=deletion;Left=chr19:35039066-35039498;Right=chr19:36520988-36521454
chr19	CG	SV	35080655	35085492	49	.	.	ID=1833;Type=deletion;Left=chr19:35080655-35080916+;Right=chr19:35084966-35085492+;Distance=4311;DiscordantMatePairAlignments=49;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem ATTTTT;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	35080655	35080916	49	+	.	ID=1833;Type=deletion;Left=chr19:35080655-35080916;Right=chr19:35084966-35085492
chr19	CG	SV	35084966	35085492	49	+	.	ID=1833;Type=deletion;Left=chr19:35080655-35080916;Right=chr19:35084966-35085492
chr19	CG	SV	35979345	35981873	10	.	.	ID=1830;Type=deletion;Left=chr19:35979345-35979815+;Right=chr19:35981618-35981873+;Distance=2273;DiscordantMatePairAlignments=10;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs66944303 (chr19:35979085-35981358);Frequency=0.94
chr19	CG	SV	35979345	35979815	10	+	.	ID=1830;Type=deletion;Left=chr19:35979345-35979815;Right=chr19:35981618-35981873
chr19	CG	SV	35981618	35981873	10	+	.	ID=1830;Type=deletion;Left=chr19:35979345-35979815;Right=chr19:35981618-35981873
chr19	CG	SV	37778528	37779270	25	.	.	ID=758;Type=tandem-duplication;Left=chr19:37778528-37778784-;Right=chr19:37778969-37779270-;Distance=486;DiscordantMatePairAlignments=25;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr19	CG	SV	37778528	37778784	25	-	.	ID=758;Type=tandem-duplication;Left=chr19:37778528-37778784;Right=chr19:37778969-37779270
chr19	CG	SV	37778969	37779270	25	-	.	ID=758;Type=tandem-duplication;Left=chr19:37778528-37778784;Right=chr19:37778969-37779270
chr19	CG	SV	41532593	41539363	15	.	.	ID=1829;Type=deletion;Left=chr19:41532593-41532716+;Right=chr19:41538914-41539363+;Distance=6321;DiscordantMatePairAlignments=15;LeftRepeat=L1MCa:LINE:L1;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_020917:-;RightGenes=NM_020917:-;XRef=;Frequency=0.47
chr19	CG	SV	41532593	41532716	15	+	.	ID=1829;Type=deletion;Left=chr19:41532593-41532716;Right=chr19:41538914-41539363
chr19	CG	SV	41538914	41539363	15	+	.	ID=1829;Type=deletion;Left=chr19:41532593-41532716;Right=chr19:41538914-41539363
chr19	CG	SV	42152627	42153527	23	.	.	ID=1828;Type=deletion;Left=chr19:42152627-42153015+;Right=chr19:42153178-42153527+;Distance=551;DiscordantMatePairAlignments=23;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr19	CG	SV	42152627	42153015	23	+	.	ID=1828;Type=deletion;Left=chr19:42152627-42153015;Right=chr19:42153178-42153527
chr19	CG	SV	42153178	42153527	23	+	.	ID=1828;Type=deletion;Left=chr19:42152627-42153015;Right=chr19:42153178-42153527
chr19	CG	SV	48220656	48548654	27	.	.	ID=755;Type=tandem-duplication;Left=chr19:48220656-48220955-;Right=chr19:48548271-48548654-;Distance=327699;DiscordantMatePairAlignments=27;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=NM_001113410:-;NM_002785:-;NM_203287:-;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	48220656	48220955	27	-	.	ID=755;Type=tandem-duplication;Left=chr19:48220656-48220955;Right=chr19:48548271-48548654
chr19	CG	SV	48548271	48548654	27	-	.	ID=755;Type=tandem-duplication;Left=chr19:48220656-48220955;Right=chr19:48548271-48548654
chr19	CG	SV	48874773	48875794	51	.	.	ID=754;Type=tandem-duplication;Left=chr19:48874773-48875206-;Right=chr19:48875557-48875794-;Distance=588;DiscordantMatePairAlignments=51;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	48874773	48875206	51	-	.	ID=754;Type=tandem-duplication;Left=chr19:48874773-48875206;Right=chr19:48875557-48875794
chr19	CG	SV	48875557	48875794	51	-	.	ID=754;Type=tandem-duplication;Left=chr19:48874773-48875206;Right=chr19:48875557-48875794
chr19	CG	SV	51647947	51648562	14	.	.	ID=1824;Type=deletion;Left=chr19:51647947-51648236+;Right=chr19:51648274-51648562+;Distance=327;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem period 127;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs71171947 (chr19:51647947-51648274);Frequency=1.00
chr19	CG	SV	51647947	51648236	14	+	.	ID=1824;Type=deletion;Left=chr19:51647947-51648236;Right=chr19:51648274-51648562
chr19	CG	SV	51648274	51648562	14	+	.	ID=1824;Type=deletion;Left=chr19:51647947-51648236;Right=chr19:51648274-51648562
chr19	CG	SV	56468219	56468984	16	.	.	ID=1822;Type=deletion;Left=chr19:56468219-56468434+;Right=chr19:56468531-56468984+;Distance=312;DiscordantMatePairAlignments=16;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10705175 (chr19:56468219-56468530);Frequency=0.65
chr19	CG	SV	56468219	56468434	16	+	.	ID=1822;Type=deletion;Left=chr19:56468219-56468434;Right=chr19:56468531-56468984
chr19	CG	SV	56468531	56468984	16	+	.	ID=1822;Type=deletion;Left=chr19:56468219-56468434;Right=chr19:56468531-56468984
chr19	CG	SV	57275869	63648169	20	.	.	ID=63;Type=probable-inversion;Left=chr19:57275869-57276266-;Right=chr19:63647895-63648169+;Distance=6371629;DiscordantMatePairAlignments=20;LeftRepeat=MER2:DNA:MER2_type;Self chain;RightRepeat=Self chain;LeftGenes=NM_001136499:-;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	57275869	57276266	20	-	.	ID=63;Type=probable-inversion;Left=chr19:57275869-57276266;Right=chr19:63647895-63648169
chr19	CG	SV	63647895	63648169	20	-	.	ID=63;Type=probable-inversion;Left=chr19:57275869-57276266;Right=chr19:63647895-63648169
chr19	CG	SV	57787825	57789900	22	.	.	ID=1820;Type=deletion;Left=chr19:57787825-57788235+;Right=chr19:57789427-57789900+;Distance=1602;DiscordantMatePairAlignments=22;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72196700 (chr19:57787818-57789420);Frequency=0.47
chr19	CG	SV	57787825	57788235	22	+	.	ID=1820;Type=deletion;Left=chr19:57787825-57788235;Right=chr19:57789427-57789900
chr19	CG	SV	57789427	57789900	22	+	.	ID=1820;Type=deletion;Left=chr19:57787825-57788235;Right=chr19:57789427-57789900
chr19	CG	SV	58114013	58116313	19	.	.	ID=1819;Type=deletion;Left=chr19:58114013-58114473+;Right=chr19:58116023-58116313+;Distance=2010;DiscordantMatePairAlignments=19;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr19	CG	SV	58114013	58114473	19	+	.	ID=1819;Type=deletion;Left=chr19:58114013-58114473;Right=chr19:58116023-58116313
chr19	CG	SV	58116023	58116313	19	+	.	ID=1819;Type=deletion;Left=chr19:58114013-58114473;Right=chr19:58116023-58116313
chr19	CG	SV	58380999	58384262	69	.	.	ID=1816;Type=deletion;Left=chr19:58380999-58381261+;Right=chr19:58383780-58384262+;Distance=2781;DiscordantMatePairAlignments=69;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;Tandem T;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_024733:-;RightGenes=NM_024733:-;XRef=;Frequency=1.00
chr19	CG	SV	58380999	58381261	69	+	.	ID=1816;Type=deletion;Left=chr19:58380999-58381261;Right=chr19:58383780-58384262
chr19	CG	SV	58383780	58384262	69	+	.	ID=1816;Type=deletion;Left=chr19:58380999-58381261;Right=chr19:58383780-58384262
chr19	CG	SV	60296552	60297841	39	.	.	ID=1812;Type=deletion;Left=chr19:60296552-60296918+;Right=chr19:60297496-60297841+;Distance=944;DiscordantMatePairAlignments=39;LeftRepeat=MSR1:Satellite:Satellite;Self chain;Tandem period 109;Tandem period 36;Tandem period 73;RightRepeat=MSR1:Satellite:Satellite;Self chain;Tandem period 109;Tandem period 36;Tandem period 73;LeftGenes=NM_017607:-;RightGenes=NM_017607:-;XRef=;Frequency=0.82
chr19	CG	SV	60296552	60296918	39	+	.	ID=1812;Type=deletion;Left=chr19:60296552-60296918;Right=chr19:60297496-60297841
chr19	CG	SV	60297496	60297841	39	+	.	ID=1812;Type=deletion;Left=chr19:60296552-60296918;Right=chr19:60297496-60297841
chr19	CG	SV	60733675	60734524	71	.	.	ID=1810;Type=deletion;Left=chr19:60733675-60734091+;Right=chr19:60734011-60734524+;Distance=336;DiscordantMatePairAlignments=71;LeftRepeat=Self chain;Tandem period 131;Tandem period 168;Tandem period 19;Tandem period 57;RightRepeat=Self chain;Tandem period 37;Tandem period 38;LeftGenes=NM_001101401:-;RightGenes=NM_001101401:-;XRef=rs71171963 (chr19:60733648-60733984);Frequency=1.00
chr19	CG	SV	60733675	60734091	71	+	.	ID=1810;Type=deletion;Left=chr19:60733675-60734091;Right=chr19:60734011-60734524
chr19	CG	SV	60734011	60734524	71	+	.	ID=1810;Type=deletion;Left=chr19:60733675-60734091;Right=chr19:60734011-60734524
chr19	CG	SV	61283238	61283971	10	.	.	ID=1809;Type=deletion;Left=chr19:61283238-61283551+;Right=chr19:61283859-61283971+;Distance=621;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 69;RightRepeat=Self chain;Tandem period 69;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	61283238	61283551	10	+	.	ID=1809;Type=deletion;Left=chr19:61283238-61283551;Right=chr19:61283859-61283971
chr19	CG	SV	61283859	61283971	10	+	.	ID=1809;Type=deletion;Left=chr19:61283238-61283551;Right=chr19:61283859-61283971
chr19	CG	SV	61509550	61510513	35	.	.	ID=1808;Type=deletion;Left=chr19:61509550-61509811+;Right=chr19:61510390-61510513+;Distance=840;DiscordantMatePairAlignments=35;LeftRepeat=Self chain;Tandem period 84;RightRepeat=Self chain;Tandem period 84;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr19	CG	SV	61509550	61509811	35	+	.	ID=1808;Type=deletion;Left=chr19:61509550-61509811;Right=chr19:61510390-61510513
chr19	CG	SV	61510390	61510513	35	+	.	ID=1808;Type=deletion;Left=chr19:61509550-61509811;Right=chr19:61510390-61510513
chr19	CG	SV	61558270	61562174	89	.	.	ID=1807;Type=deletion;Left=chr19:61558270-61558755+;Right=chr19:61561735-61562174+;Distance=3465;DiscordantMatePairAlignments=89;LeftRepeat=Self chain;RightRepeat=L1PA10:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs72037353 (chr19:61558270-61561735);Frequency=0.12
chr19	CG	SV	61558270	61558755	89	+	.	ID=1807;Type=deletion;Left=chr19:61558270-61558755;Right=chr19:61561735-61562174
chr19	CG	SV	61561735	61562174	89	+	.	ID=1807;Type=deletion;Left=chr19:61558270-61558755;Right=chr19:61561735-61562174
chr20	CG	SV	1337146	1339225	137	.	.	ID=1804;Type=deletion;Left=chr20:1337146-1337580+;Right=chr20:1338817-1339225+;Distance=1671;DiscordantMatePairAlignments=137;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs66897164 (chr20:1337143-1338814);Frequency=0.94
chr20	CG	SV	1337146	1337580	137	+	.	ID=1804;Type=deletion;Left=chr20:1337146-1337580;Right=chr20:1338817-1339225
chr20	CG	SV	1338817	1339225	137	+	.	ID=1804;Type=deletion;Left=chr20:1337146-1337580;Right=chr20:1338817-1339225
chr20	CG	SV	1943501	1945874	19	.	.	ID=1803;Type=deletion;Left=chr20:1943501-1943835+;Right=chr20:1945532-1945874+;Distance=2031;DiscordantMatePairAlignments=19;LeftRepeat=L1MD2:LINE:L1;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr20	CG	SV	1943501	1943835	19	+	.	ID=1803;Type=deletion;Left=chr20:1943501-1943835;Right=chr20:1945532-1945874
chr20	CG	SV	1945532	1945874	19	+	.	ID=1803;Type=deletion;Left=chr20:1943501-1943835;Right=chr20:1945532-1945874
chr20	CG	SV	2164839	2165103	211	.	.	ID=747;Type=tandem-duplication;Left=chr20:2164839-2164983-;Right=chr20:2164968-2165103-;Distance=120;DiscordantMatePairAlignments=211;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr20	CG	SV	2164839	2164983	211	-	.	ID=747;Type=tandem-duplication;Left=chr20:2164839-2164983;Right=chr20:2164968-2165103
chr20	CG	SV	2164968	2165103	211	-	.	ID=747;Type=tandem-duplication;Left=chr20:2164839-2164983;Right=chr20:2164968-2165103
chr20	CG	SV	2306747	2308680	44	.	.	ID=746;Type=complex;Left=chr20:2306747-2307293-;Right=chr20:2308105-2308680-;Distance=1387;DiscordantMatePairAlignments=44;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr20	CG	SV	2306747	2307293	44	-	.	ID=746;Type=complex;Left=chr20:2306747-2307293;Right=chr20:2308105-2308680
chr20	CG	SV	2308105	2308680	44	-	.	ID=746;Type=complex;Left=chr20:2306747-2307293;Right=chr20:2308105-2308680
chr20	CG	SV	2307903	2309027	52	.	.	ID=1802;Type=complex;Left=chr20:2307903-2308110+;Right=chr20:2308608-2309027+;Distance=705;DiscordantMatePairAlignments=52;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67473611 (chr20:2307903-2308608);Frequency=0.76
chr20	CG	SV	2307903	2308110	52	+	.	ID=1802;Type=complex;Left=chr20:2307903-2308110;Right=chr20:2308608-2309027
chr20	CG	SV	2308608	2309027	52	+	.	ID=1802;Type=complex;Left=chr20:2307903-2308110;Right=chr20:2308608-2309027
chr20	CG	SV	4879297	4920499	42	.	.	ID=1798;Type=deletion;Left=chr20:4879297-4879749+;Right=chr20:4919975-4920499+;Distance=40678;DiscordantMatePairAlignments=42;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=NM_005116:-;NM_203327:-;RightGenes=NM_005116:-;NM_203327:-;XRef=;Frequency=0.00
chr20	CG	SV	4879297	4879749	42	+	.	ID=1798;Type=deletion;Left=chr20:4879297-4879749;Right=chr20:4919975-4920499
chr20	CG	SV	4919975	4920499	42	+	.	ID=1798;Type=deletion;Left=chr20:4879297-4879749;Right=chr20:4919975-4920499
chr20	CG	SV	6098959	6099717	28	.	.	ID=1797;Type=deletion;Left=chr20:6098959-6099403+;Right=chr20:6099291-6099717+;Distance=332;DiscordantMatePairAlignments=28;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs33942407 (chr20:6098945-6099277);Frequency=0.88
chr20	CG	SV	6098959	6099403	28	+	.	ID=1797;Type=deletion;Left=chr20:6098959-6099403;Right=chr20:6099291-6099717
chr20	CG	SV	6099291	6099717	28	+	.	ID=1797;Type=deletion;Left=chr20:6098959-6099403;Right=chr20:6099291-6099717
chr20	CG	SV	7044789	7051338	81	.	.	ID=1796;Type=deletion;Left=chr20:7044789-7045157+;Right=chr20:7050854-7051338+;Distance=6065;DiscordantMatePairAlignments=81;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66718658 (chr20:7044793-7050858);Frequency=0.35
chr20	CG	SV	7044789	7045157	81	+	.	ID=1796;Type=deletion;Left=chr20:7044789-7045157;Right=chr20:7050854-7051338
chr20	CG	SV	7050854	7051338	81	+	.	ID=1796;Type=deletion;Left=chr20:7044789-7045157;Right=chr20:7050854-7051338
chr20	CG	SV	15249734	15252179	147	.	.	ID=1792;Type=deletion;Left=chr20:15249734-15250172+;Right=chr20:15251771-15252179+;Distance=2037;DiscordantMatePairAlignments=147;LeftRepeat=;RightRepeat=;LeftGenes=NM_001033087:+;NM_080676:+;RightGenes=NM_001033087:+;NM_080676:+;XRef=rs71703687 (chr20:15249734-15251771);Frequency=0.47
chr20	CG	SV	15249734	15250172	147	+	.	ID=1792;Type=deletion;Left=chr20:15249734-15250172;Right=chr20:15251771-15252179
chr20	CG	SV	15251771	15252179	147	+	.	ID=1792;Type=deletion;Left=chr20:15249734-15250172;Right=chr20:15251771-15252179
chr20	CG	SV	17051451	17052145	19	.	.	ID=1791;Type=deletion;Left=chr20:17051451-17051949+;Right=chr20:17051796-17052145+;Distance=345;DiscordantMatePairAlignments=19;LeftRepeat=L1MC3:LINE:L1;Tandem T;RightRepeat=L1MC3:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71841039 (chr20:17051434-17051773);Frequency=1.00
chr20	CG	SV	17051451	17051949	19	+	.	ID=1791;Type=deletion;Left=chr20:17051451-17051949;Right=chr20:17051796-17052145
chr20	CG	SV	17051796	17052145	19	+	.	ID=1791;Type=deletion;Left=chr20:17051451-17051949;Right=chr20:17051796-17052145
chr20	CG	SV	19009430	19010110	17	.	.	ID=1790;Type=deletion;Left=chr20:19009430-19009893+;Right=chr20:19009743-19010110+;Distance=313;DiscordantMatePairAlignments=17;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=MLT1A0:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs34277434 (chr20:19009430-19009743);Frequency=0.76
chr20	CG	SV	19009430	19009893	17	+	.	ID=1790;Type=deletion;Left=chr20:19009430-19009893;Right=chr20:19009743-19010110
chr20	CG	SV	19009743	19010110	17	+	.	ID=1790;Type=deletion;Left=chr20:19009430-19009893;Right=chr20:19009743-19010110
chr20	CG	SV	21234115	21237101	92	.	.	ID=1788;Type=deletion;Left=chr20:21234115-21234633+;Right=chr20:21236797-21237101+;Distance=2682;DiscordantMatePairAlignments=92;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_012255:+;RightGenes=NM_012255:+;XRef=rs67065922 (chr20:21234127-21236809);Frequency=0.88
chr20	CG	SV	21234115	21234633	92	+	.	ID=1788;Type=deletion;Left=chr20:21234115-21234633;Right=chr20:21236797-21237101
chr20	CG	SV	21236797	21237101	92	+	.	ID=1788;Type=deletion;Left=chr20:21234115-21234633;Right=chr20:21236797-21237101
chr20	CG	SV	23051303	23052055	47	.	.	ID=1785;Type=complex;Left=chr20:23051303-23051851+;Right=chr20:23051632-23052055+;Distance=329;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr20	CG	SV	23051303	23051851	47	+	.	ID=1785;Type=complex;Left=chr20:23051303-23051851;Right=chr20:23051632-23052055
chr20	CG	SV	23051632	23052055	47	+	.	ID=1785;Type=complex;Left=chr20:23051303-23051851;Right=chr20:23051632-23052055
chr20	CG	SV	23051303	23052097	17	.	.	ID=1786;Type=complex;Left=chr20:23051303-23051621+;Right=chr20:23051632-23052097+;Distance=329;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr20	CG	SV	23051303	23051621	17	+	.	ID=1786;Type=complex;Left=chr20:23051303-23051621;Right=chr20:23051632-23052097
chr20	CG	SV	23051632	23052097	17	+	.	ID=1786;Type=complex;Left=chr20:23051303-23051621;Right=chr20:23051632-23052097
chr20	CG	SV	24458241	24458674	11	.	.	ID=743;Type=tandem-duplication;Left=chr20:24458241-24458445-;Right=chr20:24458478-24458674-;Distance=229;DiscordantMatePairAlignments=11;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 42;RightRepeat=Self chain;LeftGenes=NM_024893:+;RightGenes=NM_024893:+;XRef=;Frequency=0.71
chr20	CG	SV	24458241	24458445	11	-	.	ID=743;Type=tandem-duplication;Left=chr20:24458241-24458445;Right=chr20:24458478-24458674
chr20	CG	SV	24458478	24458674	11	-	.	ID=743;Type=tandem-duplication;Left=chr20:24458241-24458445;Right=chr20:24458478-24458674
chr20	CG	SV	26152614	26153712	13	.	.	ID=1784;Type=deletion;Left=chr20:26152614-26152969+;Right=chr20:26153372-26153712+;Distance=758;DiscordantMatePairAlignments=13;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr20	CG	SV	26152614	26152969	13	+	.	ID=1784;Type=deletion;Left=chr20:26152614-26152969;Right=chr20:26153372-26153712
chr20	CG	SV	26153372	26153712	13	+	.	ID=1784;Type=deletion;Left=chr20:26152614-26152969;Right=chr20:26153372-26153712
chr20	CG	SV	26162312	26168510	10	.	.	ID=1783;Type=deletion;Left=chr20:26162312-26162641+;Right=chr20:26168376-26168510+;Distance=6064;DiscordantMatePairAlignments=10;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr20	CG	SV	26162312	26162641	10	+	.	ID=1783;Type=deletion;Left=chr20:26162312-26162641;Right=chr20:26168376-26168510
chr20	CG	SV	26168376	26168510	10	+	.	ID=1783;Type=deletion;Left=chr20:26162312-26162641;Right=chr20:26168376-26168510
chr20	CG	SV	28252473	28255634	86	.	.	ID=1781;Type=deletion;Left=chr20:28252473-28252896+;Right=chr20:28255076-28255634+;Distance=2603;DiscordantMatePairAlignments=86;LeftRepeat=Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr20	CG	SV	28252473	28252896	86	+	.	ID=1781;Type=deletion;Left=chr20:28252473-28252896;Right=chr20:28255076-28255634
chr20	CG	SV	28255076	28255634	86	+	.	ID=1781;Type=deletion;Left=chr20:28252473-28252896;Right=chr20:28255076-28255634
chr20	CG	SV	32279596	32283289	122	.	.	ID=1779;Type=deletion;Left=chr20:32279596-32280007+;Right=chr20:32282893-32283289+;Distance=3297;DiscordantMatePairAlignments=122;LeftRepeat=L1M5:LINE:L1;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71190078 (chr20:32279599-32282896);Frequency=1.00
chr20	CG	SV	32279596	32280007	122	+	.	ID=1779;Type=deletion;Left=chr20:32279596-32280007;Right=chr20:32282893-32283289
chr20	CG	SV	32282893	32283289	122	+	.	ID=1779;Type=deletion;Left=chr20:32279596-32280007;Right=chr20:32282893-32283289
chr20	CG	SV	32579492	32580179	27	.	.	ID=1778;Type=deletion;Left=chr20:32579492-32579973+;Right=chr20:32579825-32580179+;Distance=333;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=;LeftGenes=NM_014183:+;RightGenes=NM_014183:+;XRef=rs10527720 (chr20:32579472-32579805);Frequency=0.88
chr20	CG	SV	32579492	32579973	27	+	.	ID=1778;Type=deletion;Left=chr20:32579492-32579973;Right=chr20:32579825-32580179
chr20	CG	SV	32579825	32580179	27	+	.	ID=1778;Type=deletion;Left=chr20:32579492-32579973;Right=chr20:32579825-32580179
chr20	CG	SV	33085327	33086021	33	.	.	ID=1776;Type=deletion;Left=chr20:33085327-33085829+;Right=chr20:33085649-33086021+;Distance=322;DiscordantMatePairAlignments=33;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_015638:-;NM_199368:-;RightGenes=NM_015638:-;NM_199368:-;XRef=rs72263875 (chr20:33085327-33085649);Frequency=1.00
chr20	CG	SV	33085327	33085829	33	+	.	ID=1776;Type=deletion;Left=chr20:33085327-33085829;Right=chr20:33085649-33086021
chr20	CG	SV	33085649	33086021	33	+	.	ID=1776;Type=deletion;Left=chr20:33085327-33085829;Right=chr20:33085649-33086021
chr20	CG	SV	35249037	35249797	10	.	.	ID=1774;Type=deletion;Left=chr20:35249037-35249509+;Right=chr20:35249349-35249797+;Distance=312;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L1MEc:LINE:L1;LeftGenes=NM_001135771:+;NM_002951:+;RightGenes=NM_001135771:+;NM_002951:+;XRef=rs67143039 (chr20:35249037-35249349);Frequency=0.82
chr20	CG	SV	35249037	35249509	10	+	.	ID=1774;Type=deletion;Left=chr20:35249037-35249509;Right=chr20:35249349-35249797
chr20	CG	SV	35249349	35249797	10	+	.	ID=1774;Type=deletion;Left=chr20:35249037-35249509;Right=chr20:35249349-35249797
chr20	CG	SV	39339909	39341265	18	.	.	ID=1773;Type=deletion;Left=chr20:39339909-39340381+;Right=chr20:39341095-39341265+;Distance=1186;DiscordantMatePairAlignments=18;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_015035:-;RightGenes=NM_015035:-;XRef=;Frequency=0.06
chr20	CG	SV	39339909	39340381	18	+	.	ID=1773;Type=deletion;Left=chr20:39339909-39340381;Right=chr20:39341095-39341265
chr20	CG	SV	39341095	39341265	18	+	.	ID=1773;Type=deletion;Left=chr20:39339909-39340381;Right=chr20:39341095-39341265
chr20	CG	SV	41458017	41459561	165	.	.	ID=1772;Type=deletion;Left=chr20:41458017-41458432+;Right=chr20:41459215-41459561+;Distance=1198;DiscordantMatePairAlignments=165;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67207892 (chr20:41458026-41459224);Frequency=0.94
chr20	CG	SV	41458017	41458432	165	+	.	ID=1772;Type=deletion;Left=chr20:41458017-41458432;Right=chr20:41459215-41459561
chr20	CG	SV	41459215	41459561	165	+	.	ID=1772;Type=deletion;Left=chr20:41458017-41458432;Right=chr20:41459215-41459561
chr20	CG	SV	41758355	41759056	81	.	.	ID=740;Type=tandem-duplication;Left=chr20:41758355-41758552-;Right=chr20:41758590-41759056-;Distance=504;DiscordantMatePairAlignments=81;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_002466:+;RightGenes=NM_002466:+;XRef=;Frequency=1.00
chr20	CG	SV	41758355	41758552	81	-	.	ID=740;Type=tandem-duplication;Left=chr20:41758355-41758552;Right=chr20:41758590-41759056
chr20	CG	SV	41758590	41759056	81	-	.	ID=740;Type=tandem-duplication;Left=chr20:41758355-41758552;Right=chr20:41758590-41759056
chr20	CG	SV	42109542	42110381	29	.	.	ID=1771;Type=deletion;Left=chr20:42109542-42110021+;Right=chr20:42109941-42110381+;Distance=399;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=SVA:Other:Other;Tandem A;LeftGenes=NM_001098796:+;NM_001098797:+;NM_001098798:+;NM_032883:+;RightGenes=NM_001098796:+;NM_001098797:+;NM_001098798:+;NM_032883:+;XRef=rs10522274 (chr20:42109542-42109941);Frequency=1.00
chr20	CG	SV	42109542	42110021	29	+	.	ID=1771;Type=deletion;Left=chr20:42109542-42110021;Right=chr20:42109941-42110381
chr20	CG	SV	42109941	42110381	29	+	.	ID=1771;Type=deletion;Left=chr20:42109542-42110021;Right=chr20:42109941-42110381
chr20	CG	SV	43637478	43641145	42	.	.	ID=1770;Type=deletion;Left=chr20:43637478-43637836+;Right=chr20:43640716-43641145+;Distance=3238;DiscordantMatePairAlignments=42;LeftRepeat=L1M3:LINE:L1;RightRepeat=;LeftGenes=NM_130896:-;NM_181510:-;RightGenes=NM_130896:-;NM_181510:-;XRef=;Frequency=0.29
chr20	CG	SV	43637478	43637836	42	+	.	ID=1770;Type=deletion;Left=chr20:43637478-43637836;Right=chr20:43640716-43641145
chr20	CG	SV	43640716	43641145	42	+	.	ID=1770;Type=deletion;Left=chr20:43637478-43637836;Right=chr20:43640716-43641145
chr20	CG	SV	43968884	43969650	57	.	.	ID=1769;Type=deletion;Left=chr20:43968884-43969288+;Right=chr20:43969320-43969650+;Distance=436;DiscordantMatePairAlignments=57;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_006227:-;NM_182676:-;RightGenes=NM_006227:-;NM_182676:-;XRef=rs71981103 (chr20:43968778-43969214);Frequency=0.88
chr20	CG	SV	43968884	43969288	57	+	.	ID=1769;Type=deletion;Left=chr20:43968884-43969288;Right=chr20:43969320-43969650
chr20	CG	SV	43969320	43969650	57	+	.	ID=1769;Type=deletion;Left=chr20:43968884-43969288;Right=chr20:43969320-43969650
chr20	CG	SV	46808824	46811467	39	.	.	ID=1768;Type=deletion;Left=chr20:46808824-46809295+;Right=chr20:46811240-46811467+;Distance=2416;DiscordantMatePairAlignments=39;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_020820:-;RightGenes=NM_020820:-;XRef=;Frequency=0.00
chr20	CG	SV	46808824	46809295	39	+	.	ID=1768;Type=deletion;Left=chr20:46808824-46809295;Right=chr20:46811240-46811467
chr20	CG	SV	46811240	46811467	39	+	.	ID=1768;Type=deletion;Left=chr20:46808824-46809295;Right=chr20:46811240-46811467
chr20	CG	SV	52080477	52091856	93	.	.	ID=1766;Type=deletion;Left=chr20:52080477-52080897+;Right=chr20:52091415-52091856+;Distance=10938;DiscordantMatePairAlignments=93;LeftRepeat=;RightRepeat=L1MC4a:LINE:L1;LeftGenes=NM_003657:-;RightGenes=NM_003657:-;XRef=;Frequency=0.29
chr20	CG	SV	52080477	52080897	93	+	.	ID=1766;Type=deletion;Left=chr20:52080477-52080897;Right=chr20:52091415-52091856
chr20	CG	SV	52091415	52091856	93	+	.	ID=1766;Type=deletion;Left=chr20:52080477-52080897;Right=chr20:52091415-52091856
chr20	CG	SV	53868021	53874600	142	.	.	ID=1763;Type=deletion;Left=chr20:53868021-53868478+;Right=chr20:53874027-53874600+;Distance=6006;DiscordantMatePairAlignments=142;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67942761 (chr20:53868017-53874023);Frequency=0.94
chr20	CG	SV	53868021	53868478	142	+	.	ID=1763;Type=deletion;Left=chr20:53868021-53868478;Right=chr20:53874027-53874600
chr20	CG	SV	53874027	53874600	142	+	.	ID=1763;Type=deletion;Left=chr20:53868021-53868478;Right=chr20:53874027-53874600
chr20	CG	SV	53896641	53897430	10	.	.	ID=1762;Type=deletion;Left=chr20:53896641-53897064+;Right=chr20:53896958-53897430+;Distance=317;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs67501559 (chr20:53896641-53896958);Frequency=0.88
chr20	CG	SV	53896641	53897064	10	+	.	ID=1762;Type=deletion;Left=chr20:53896641-53897064;Right=chr20:53896958-53897430
chr20	CG	SV	53896958	53897430	10	+	.	ID=1762;Type=deletion;Left=chr20:53896641-53897064;Right=chr20:53896958-53897430
chr20	CG	SV	55512726	55514185	16	.	.	ID=1761;Type=deletion;Left=chr20:55512726-55513044+;Right=chr20:55514006-55514185+;Distance=1280;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_080618:-;RightGenes=NM_080618:-;XRef=;Frequency=0.18
chr20	CG	SV	55512726	55513044	16	+	.	ID=1761;Type=deletion;Left=chr20:55512726-55513044;Right=chr20:55514006-55514185
chr20	CG	SV	55514006	55514185	16	+	.	ID=1761;Type=deletion;Left=chr20:55512726-55513044;Right=chr20:55514006-55514185
chr20	CG	SV	58545071	58558656	32	.	.	ID=1759;Type=deletion;Left=chr20:58545071-58545446+;Right=chr20:58558265-58558656+;Distance=13194;DiscordantMatePairAlignments=32;LeftRepeat=AluSq:SINE:Alu;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr20	CG	SV	58545071	58545446	32	+	.	ID=1759;Type=deletion;Left=chr20:58545071-58545446;Right=chr20:58558265-58558656
chr20	CG	SV	58558265	58558656	32	+	.	ID=1759;Type=deletion;Left=chr20:58545071-58545446;Right=chr20:58558265-58558656
chr20	CG	SV	59407575	59408345	19	.	.	ID=1758;Type=deletion;Left=chr20:59407575-59407971+;Right=chr20:59407896-59408345+;Distance=321;DiscordantMatePairAlignments=19;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001794:+;RightGenes=NM_001794:+;XRef=rs66605952 (chr20:59407575-59407896);Frequency=0.82
chr20	CG	SV	59407575	59407971	19	+	.	ID=1758;Type=deletion;Left=chr20:59407575-59407971;Right=chr20:59407896-59408345
chr20	CG	SV	59407896	59408345	19	+	.	ID=1758;Type=deletion;Left=chr20:59407575-59407971;Right=chr20:59407896-59408345
chr20	CG	SV	61195143	61196516	176	.	.	ID=1756;Type=deletion;Left=chr20:61195143-61195584+;Right=chr20:61196042-61196516+;Distance=899;DiscordantMatePairAlignments=176;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67749901 (chr20:61195143-61196041);Frequency=1.00
chr20	CG	SV	61195143	61195584	176	+	.	ID=1756;Type=deletion;Left=chr20:61195143-61195584;Right=chr20:61196042-61196516
chr20	CG	SV	61196042	61196516	176	+	.	ID=1756;Type=deletion;Left=chr20:61195143-61195584;Right=chr20:61196042-61196516
chr20	CG	SV	61738152	61738849	14	.	.	ID=1755;Type=deletion;Left=chr20:61738152-61738556+;Right=chr20:61738663-61738849+;Distance=511;DiscordantMatePairAlignments=14;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr20	CG	SV	61738152	61738556	14	+	.	ID=1755;Type=deletion;Left=chr20:61738152-61738556;Right=chr20:61738663-61738849
chr20	CG	SV	61738663	61738849	14	+	.	ID=1755;Type=deletion;Left=chr20:61738152-61738556;Right=chr20:61738663-61738849
chr20	CG	SV	61862533	61863294	40	.	.	ID=1754;Type=deletion;Left=chr20:61862533-61862991+;Right=chr20:61863075-61863294+;Distance=542;DiscordantMatePairAlignments=40;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_025224:-;RightGenes=NM_025224:-;XRef=;Frequency=0.00
chr20	CG	SV	61862533	61862991	40	+	.	ID=1754;Type=deletion;Left=chr20:61862533-61862991;Right=chr20:61863075-61863294
chr20	CG	SV	61863075	61863294	40	+	.	ID=1754;Type=deletion;Left=chr20:61862533-61862991;Right=chr20:61863075-61863294
chr20	CG	SV	62066667	62068373	128	.	.	ID=1752;Type=deletion;Left=chr20:62066667-62067177+;Right=chr20:62067944-62068373+;Distance=1277;DiscordantMatePairAlignments=128;LeftRepeat=Self chain;Tandem period 43;RightRepeat=Self chain;Tandem period 43;LeftGenes=NM_020713:-;RightGenes=NM_020713:-;XRef=;Frequency=0.65
chr20	CG	SV	62066667	62067177	128	+	.	ID=1752;Type=deletion;Left=chr20:62066667-62067177;Right=chr20:62067944-62068373
chr20	CG	SV	62067944	62068373	128	+	.	ID=1752;Type=deletion;Left=chr20:62066667-62067177;Right=chr20:62067944-62068373
chr20	CG	SV	62192599	62193376	19	.	.	ID=1751;Type=deletion;Left=chr20:62192599-62192902+;Right=chr20:62193145-62193376+;Distance=546;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;Tandem period 39;RightRepeat=Self chain;Tandem period 39;LeftGenes=NM_000913:+;NM_182647:+;RightGenes=NM_000913:+;NM_182647:+;XRef=;Frequency=0.94
chr20	CG	SV	62192599	62192902	19	+	.	ID=1751;Type=deletion;Left=chr20:62192599-62192902;Right=chr20:62193145-62193376
chr20	CG	SV	62193145	62193376	19	+	.	ID=1751;Type=deletion;Left=chr20:62192599-62192902;Right=chr20:62193145-62193376
chr21	CG	SV	17534203	17535935	27	.	.	ID=1736;Type=deletion;Left=chr21:17534203-17534592+;Right=chr21:17535507-17535935+;Distance=1304;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;RightRepeat=L1PA7:LINE:L1;Tandem period 27;LeftGenes=;RightGenes=;XRef=rs71781010 (chr21:17534203-17535507);Frequency=0.76
chr21	CG	SV	17534203	17534592	27	+	.	ID=1736;Type=deletion;Left=chr21:17534203-17534592;Right=chr21:17535507-17535935
chr21	CG	SV	17535507	17535935	27	+	.	ID=1736;Type=deletion;Left=chr21:17534203-17534592;Right=chr21:17535507-17535935
chr21	CG	SV	18248699	18251376	20	.	.	ID=1735;Type=deletion;Left=chr21:18248699-18249156+;Right=chr21:18251208-18251376+;Distance=2509;DiscordantMatePairAlignments=20;LeftRepeat=MLT2B1:LTR:ERVL;RightRepeat=MLT2B1:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr21	CG	SV	18248699	18249156	20	+	.	ID=1735;Type=deletion;Left=chr21:18248699-18249156;Right=chr21:18251208-18251376
chr21	CG	SV	18251208	18251376	20	+	.	ID=1735;Type=deletion;Left=chr21:18248699-18249156;Right=chr21:18251208-18251376
chr21	CG	SV	18835927	18836619	20	.	.	ID=1733;Type=deletion;Left=chr21:18835927-18836376+;Right=chr21:18836268-18836619+;Distance=341;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71729861 (chr21:18835927-18836268);Frequency=0.53
chr21	CG	SV	18835927	18836376	20	+	.	ID=1733;Type=deletion;Left=chr21:18835927-18836376;Right=chr21:18836268-18836619
chr21	CG	SV	18836268	18836619	20	+	.	ID=1733;Type=deletion;Left=chr21:18835927-18836376;Right=chr21:18836268-18836619
chr21	CG	SV	23296667	23297728	79	.	.	ID=1731;Type=deletion;Left=chr21:23296667-23297090+;Right=chr21:23297282-23297728+;Distance=615;DiscordantMatePairAlignments=79;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71775386 (chr21:23296667-23297282);Frequency=0.76
chr21	CG	SV	23296667	23297090	79	+	.	ID=1731;Type=deletion;Left=chr21:23296667-23297090;Right=chr21:23297282-23297728
chr21	CG	SV	23297282	23297728	79	+	.	ID=1731;Type=deletion;Left=chr21:23296667-23297090;Right=chr21:23297282-23297728
chr21	CG	SV	26296029	26296570	88	.	.	ID=4232;Type=inversion;Left=chr21:26296029-26296534+;Right=chr21:26296119-26296570-;Distance=541;DiscordantMatePairAlignments=88;LeftRepeat=;RightRepeat=;LeftGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;RightGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;XRef=;Frequency=1.00
chr21	CG	SV	26296029	26296534	88	+	.	ID=4232;Type=inversion;Left=chr21:26296029-26296534;Right=chr21:26296119-26296570
chr21	CG	SV	26296119	26296570	88	+	.	ID=4232;Type=inversion;Left=chr21:26296029-26296534;Right=chr21:26296119-26296570
chr21	CG	SV	26295578	26297024	169	.	.	ID=53;Type=inversion;Left=chr21:26295578-26296029-;Right=chr21:26296571-26297024+;Distance=542;DiscordantMatePairAlignments=169;LeftRepeat=;RightRepeat=;LeftGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;RightGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;XRef=;Frequency=1.00
chr21	CG	SV	26295578	26296029	169	-	.	ID=53;Type=inversion;Left=chr21:26295578-26296029;Right=chr21:26296571-26297024
chr21	CG	SV	26296571	26297024	169	-	.	ID=53;Type=inversion;Left=chr21:26295578-26296029;Right=chr21:26296571-26297024
chr21	CG	SV	26942232	26944130	69	.	.	ID=52;Type=complex;Left=chr21:26942232-26942554-;Right=chr21:26943596-26944130+;Distance=1042;DiscordantMatePairAlignments=69;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	26942232	26942554	69	-	.	ID=52;Type=complex;Left=chr21:26942232-26942554;Right=chr21:26943596-26944130
chr21	CG	SV	26943596	26944130	69	-	.	ID=52;Type=complex;Left=chr21:26942232-26942554;Right=chr21:26943596-26944130
chr21	CG	SV	26942556	26943500	46	.	.	ID=4231;Type=complex;Left=chr21:26942556-26942983+;Right=chr21:26943232-26943500-;Distance=944;DiscordantMatePairAlignments=46;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	26942556	26942983	46	+	.	ID=4231;Type=complex;Left=chr21:26942556-26942983;Right=chr21:26943232-26943500
chr21	CG	SV	26943232	26943500	46	+	.	ID=4231;Type=complex;Left=chr21:26942556-26942983;Right=chr21:26943232-26943500
chr21	CG	SV	29185623	29186417	11	.	.	ID=1729;Type=deletion;Left=chr21:29185623-29186033+;Right=chr21:29186172-29186417+;Distance=549;DiscordantMatePairAlignments=11;LeftRepeat=L1MC1:LINE:L1;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66547158 (chr21:29185404-29185953);Frequency=1.00
chr21	CG	SV	29185623	29186033	11	+	.	ID=1729;Type=deletion;Left=chr21:29185623-29186033;Right=chr21:29186172-29186417
chr21	CG	SV	29186172	29186417	11	+	.	ID=1729;Type=deletion;Left=chr21:29185623-29186033;Right=chr21:29186172-29186417
chr21	CG	SV	29474096	29474874	68	.	.	ID=1728;Type=deletion;Left=chr21:29474096-29474507+;Right=chr21:29474450-29474874+;Distance=354;DiscordantMatePairAlignments=68;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71197491 (chr21:29474096-29474450);Frequency=1.00
chr21	CG	SV	29474096	29474507	68	+	.	ID=1728;Type=deletion;Left=chr21:29474096-29474507;Right=chr21:29474450-29474874
chr21	CG	SV	29474450	29474874	68	+	.	ID=1728;Type=deletion;Left=chr21:29474096-29474507;Right=chr21:29474450-29474874
chr21	CG	SV	36786319	36787023	11	.	.	ID=1725;Type=deletion;Left=chr21:36786319-36786818+;Right=chr21:36786641-36787023+;Distance=322;DiscordantMatePairAlignments=11;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_001146077:-;NM_001146078:-;RightGenes=NM_001146077:-;NM_001146078:-;XRef=rs71774536 (chr21:36786319-36786641);Frequency=0.10
chr21	CG	SV	36786319	36786818	11	+	.	ID=1725;Type=deletion;Left=chr21:36786319-36786818;Right=chr21:36786641-36787023
chr21	CG	SV	36786641	36787023	11	+	.	ID=1725;Type=deletion;Left=chr21:36786319-36786818;Right=chr21:36786641-36787023
chr21	CG	SV	38403440	38403938	12	.	.	ID=1724;Type=deletion;Left=chr21:38403440-38403925+;Right=chr21:38403810-38403938+;Distance=370;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem period 370;RightRepeat=Self chain;LeftGenes=NM_005867:-;RightGenes=NM_005867:-;XRef=;Frequency=1.00
chr21	CG	SV	38403440	38403925	12	+	.	ID=1724;Type=deletion;Left=chr21:38403440-38403925;Right=chr21:38403810-38403938
chr21	CG	SV	38403810	38403938	12	+	.	ID=1724;Type=deletion;Left=chr21:38403440-38403925;Right=chr21:38403810-38403938
chr21	CG	SV	38512412	38513191	23	.	.	ID=1723;Type=deletion;Left=chr21:38512412-38512830+;Right=chr21:38512758-38513191+;Distance=346;DiscordantMatePairAlignments=23;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67658089 (chr21:38512412-38512758);Frequency=1.00
chr21	CG	SV	38512412	38512830	23	+	.	ID=1723;Type=deletion;Left=chr21:38512412-38512830;Right=chr21:38512758-38513191
chr21	CG	SV	38512758	38513191	23	+	.	ID=1723;Type=deletion;Left=chr21:38512412-38512830;Right=chr21:38512758-38513191
chr21	CG	SV	41833816	41834650	86	.	.	ID=1719;Type=deletion;Left=chr21:41833816-41834237+;Right=chr21:41834266-41834650+;Distance=450;DiscordantMatePairAlignments=86;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr21	CG	SV	41833816	41834237	86	+	.	ID=1719;Type=deletion;Left=chr21:41833816-41834237;Right=chr21:41834266-41834650
chr21	CG	SV	41834266	41834650	86	+	.	ID=1719;Type=deletion;Left=chr21:41833816-41834237;Right=chr21:41834266-41834650
chr21	CG	SV	42099824	42100536	11	.	.	ID=1717;Type=deletion;Left=chr21:42099824-42099976+;Right=chr21:42100440-42100536+;Distance=616;DiscordantMatePairAlignments=11;LeftRepeat=(CCA)n:Simple_repeat:Simple_repeat;Tandem CAC;Tandem period 15;RightRepeat=(CCA)n:Simple_repeat:Simple_repeat;LeftGenes=NM_001040424:-;NM_022115:-;RightGenes=NM_001040424:-;NM_022115:-;XRef=;Frequency=1.00
chr21	CG	SV	42099824	42099976	11	+	.	ID=1717;Type=deletion;Left=chr21:42099824-42099976;Right=chr21:42100440-42100536
chr21	CG	SV	42100440	42100536	11	+	.	ID=1717;Type=deletion;Left=chr21:42099824-42099976;Right=chr21:42100440-42100536
chr21	CG	SV	42223191	42227026	204	.	.	ID=1716;Type=deletion;Left=chr21:42223191-42223711+;Right=chr21:42226560-42227026+;Distance=3369;DiscordantMatePairAlignments=204;LeftRepeat=LTR36:LTR:ERV1;RightRepeat=;LeftGenes=NM_015500:-;RightGenes=NM_015500:-;XRef=rs72055785 (chr21:42223185-42226554);Frequency=0.41
chr21	CG	SV	42223191	42223711	204	+	.	ID=1716;Type=deletion;Left=chr21:42223191-42223711;Right=chr21:42226560-42227026
chr21	CG	SV	42226560	42227026	204	+	.	ID=1716;Type=deletion;Left=chr21:42223191-42223711;Right=chr21:42226560-42227026
chr21	CG	SV	43794796	43798169	179	.	.	ID=1714;Type=deletion;Left=chr21:43794796-43795247+;Right=chr21:43797732-43798169+;Distance=2936;DiscordantMatePairAlignments=179;LeftRepeat=;RightRepeat=Tigger4(Zombi):DNA:MER2_type;LeftGenes=NM_007031:-;RightGenes=NM_007031:-;XRef=rs72438714 (chr21:43794796-43797732);Frequency=0.53
chr21	CG	SV	43794796	43795247	179	+	.	ID=1714;Type=deletion;Left=chr21:43794796-43795247;Right=chr21:43797732-43798169
chr21	CG	SV	43797732	43798169	179	+	.	ID=1714;Type=deletion;Left=chr21:43794796-43795247;Right=chr21:43797732-43798169
chr21	CG	SV	44443627	44445409	49	.	.	ID=1713;Type=deletion;Left=chr21:44443627-44444058+;Right=chr21:44445149-44445409+;Distance=1522;DiscordantMatePairAlignments=49;LeftRepeat=AluSq:SINE:Alu;RightRepeat=MER65B-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr21	CG	SV	44443627	44444058	49	+	.	ID=1713;Type=deletion;Left=chr21:44443627-44444058;Right=chr21:44445149-44445409
chr21	CG	SV	44445149	44445409	49	+	.	ID=1713;Type=deletion;Left=chr21:44443627-44444058;Right=chr21:44445149-44445409
chr21	CG	SV	45299305	45299463	155	.	.	ID=729;Type=tandem-duplication;Left=chr21:45299305-45299385-;Right=chr21:45299373-45299463-;Distance=78;DiscordantMatePairAlignments=155;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	45299305	45299385	155	-	.	ID=729;Type=tandem-duplication;Left=chr21:45299305-45299385;Right=chr21:45299373-45299463
chr21	CG	SV	45299373	45299463	155	-	.	ID=729;Type=tandem-duplication;Left=chr21:45299305-45299385;Right=chr21:45299373-45299463
chr21	CG	SV	46212457	46214620	20	.	.	ID=1709;Type=deletion;Left=chr21:46212457-46212920+;Right=chr21:46214160-46214620+;Distance=1703;DiscordantMatePairAlignments=20;LeftRepeat=L1MC4a:LINE:L1;Self chain;RightRepeat=MLT1B:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=rs72238485 (chr21:46212457-46214160);Frequency=0.94
chr21	CG	SV	46212457	46212920	20	+	.	ID=1709;Type=deletion;Left=chr21:46212457-46212920;Right=chr21:46214160-46214620
chr21	CG	SV	46214160	46214620	20	+	.	ID=1709;Type=deletion;Left=chr21:46212457-46212920;Right=chr21:46214160-46214620
chr22	CG	SV	16427373	16428175	35	.	.	ID=1704;Type=deletion;Left=chr22:16427373-16427874+;Right=chr22:16427731-16428175+;Distance=358;DiscordantMatePairAlignments=35;LeftRepeat=(TTTA)n:Simple_repeat:Simple_repeat;Self chain;Tandem TTTA;Tandem TTTTA;RightRepeat=Self chain;LeftGenes=NM_031481:+;RightGenes=NM_031481:+;XRef=rs66962360 (chr22:16427360-16427718);Frequency=0.94
chr22	CG	SV	16427373	16427874	35	+	.	ID=1704;Type=deletion;Left=chr22:16427373-16427874;Right=chr22:16427731-16428175
chr22	CG	SV	16427731	16428175	35	+	.	ID=1704;Type=deletion;Left=chr22:16427373-16427874;Right=chr22:16427731-16428175
chr22	CG	SV	16437869	16440799	16	.	.	ID=1703;Type=deletion;Left=chr22:16437869-16438231+;Right=chr22:16440575-16440799+;Distance=2706;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_031481:+;RightGenes=NM_031481:+;XRef=rs71187331 (chr22:16437770-16440477);Frequency=0.94
chr22	CG	SV	16437869	16438231	16	+	.	ID=1703;Type=deletion;Left=chr22:16437869-16438231;Right=chr22:16440575-16440799
chr22	CG	SV	16440575	16440799	16	+	.	ID=1703;Type=deletion;Left=chr22:16437869-16438231;Right=chr22:16440575-16440799
chr22	CG	SV	16663915	16664384	13	.	.	ID=1702;Type=deletion;Left=chr22:16663915-16664394+;Right=chr22:16664237-16664384+;Distance=322;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_015241:-;RightGenes=NM_015241:-;XRef=;Frequency=0.35
chr22	CG	SV	16663915	16664394	13	+	.	ID=1702;Type=deletion;Left=chr22:16663915-16664394;Right=chr22:16664237-16664384
chr22	CG	SV	16664237	16664384	13	+	.	ID=1702;Type=deletion;Left=chr22:16663915-16664394;Right=chr22:16664237-16664384
chr22	CG	SV	17479932	17481136	19	.	.	ID=1701;Type=deletion;Left=chr22:17479932-17480047+;Right=chr22:17480627-17481136+;Distance=695;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_005137:-;RightGenes=NM_005137:-;XRef=;Frequency=0.47
chr22	CG	SV	17479932	17480047	19	+	.	ID=1701;Type=deletion;Left=chr22:17479932-17480047;Right=chr22:17480627-17481136
chr22	CG	SV	17480627	17481136	19	+	.	ID=1701;Type=deletion;Left=chr22:17479932-17480047;Right=chr22:17480627-17481136
chr22	CG	SV	17951619	17953313	27	.	.	ID=1700;Type=deletion;Left=chr22:17951619-17952101+;Right=chr22:17953102-17953313+;Distance=1483;DiscordantMatePairAlignments=27;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L1MA4A:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs66925904 (chr22:17951618-17953101);Frequency=0.65
chr22	CG	SV	17951619	17952101	27	+	.	ID=1700;Type=deletion;Left=chr22:17951619-17952101;Right=chr22:17953102-17953313
chr22	CG	SV	17953102	17953313	27	+	.	ID=1700;Type=deletion;Left=chr22:17951619-17952101;Right=chr22:17953102-17953313
chr22	CG	SV	21032798	21082453	33	.	.	ID=725;Type=tandem-duplication;Left=chr22:21032798-21033118-;Right=chr22:21082161-21082453-;Distance=49335;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr22	CG	SV	21032798	21033118	33	-	.	ID=725;Type=tandem-duplication;Left=chr22:21032798-21033118;Right=chr22:21082161-21082453
chr22	CG	SV	21082161	21082453	33	-	.	ID=725;Type=tandem-duplication;Left=chr22:21032798-21033118;Right=chr22:21082161-21082453
chr22	CG	SV	21808561	21809941	93	.	.	ID=1699;Type=deletion;Left=chr22:21808561-21808935+;Right=chr22:21809692-21809941+;Distance=1131;DiscordantMatePairAlignments=93;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_014433:-;RightGenes=NM_014433:-;XRef=rs66466474 (chr22:21808353-21809484);Frequency=0.41
chr22	CG	SV	21808561	21808935	93	+	.	ID=1699;Type=deletion;Left=chr22:21808561-21808935;Right=chr22:21809692-21809941
chr22	CG	SV	21809692	21809941	93	+	.	ID=1699;Type=deletion;Left=chr22:21808561-21808935;Right=chr22:21809692-21809941
chr22	CG	SV	22525949	22528938	33	.	.	ID=1698;Type=deletion;Left=chr22:22525949-22526422+;Right=chr22:22528520-22528938+;Distance=2571;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67891020 (chr22:22525949-22528520);Frequency=1.00
chr22	CG	SV	22525949	22526422	33	+	.	ID=1698;Type=deletion;Left=chr22:22525949-22526422;Right=chr22:22528520-22528938
chr22	CG	SV	22528520	22528938	33	+	.	ID=1698;Type=deletion;Left=chr22:22525949-22526422;Right=chr22:22528520-22528938
chr22	CG	SV	23780020	23783133	28	.	.	ID=1696;Type=deletion;Left=chr22:23780020-23780303+;Right=chr22:23782793-23783133+;Distance=2773;DiscordantMatePairAlignments=28;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_001145206:+;RightGenes=NM_001145206:+;XRef=;Frequency=0.06
chr22	CG	SV	23780020	23780303	28	+	.	ID=1696;Type=deletion;Left=chr22:23780020-23780303;Right=chr22:23782793-23783133
chr22	CG	SV	23782793	23783133	28	+	.	ID=1696;Type=deletion;Left=chr22:23780020-23780303;Right=chr22:23782793-23783133
chr22	CG	SV	25498076	25500295	169	.	.	ID=1695;Type=deletion;Left=chr22:25498076-25498600+;Right=chr22:25499802-25500295+;Distance=1726;DiscordantMatePairAlignments=169;LeftRepeat=(TTTTA)n:Simple_repeat:Simple_repeat;Self chain;Tandem TTTTA;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67812002 (chr22:25498076-25499802);Frequency=1.00
chr22	CG	SV	25498076	25498600	169	+	.	ID=1695;Type=deletion;Left=chr22:25498076-25498600;Right=chr22:25499802-25500295
chr22	CG	SV	25499802	25500295	169	+	.	ID=1695;Type=deletion;Left=chr22:25498076-25498600;Right=chr22:25499802-25500295
chr22	CG	SV	29375468	29376806	46	.	.	ID=1693;Type=deletion;Left=chr22:29375468-29375893+;Right=chr22:29376235-29376806+;Distance=767;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr22	CG	SV	29375468	29375893	46	+	.	ID=1693;Type=deletion;Left=chr22:29375468-29375893;Right=chr22:29376235-29376806
chr22	CG	SV	29376235	29376806	46	+	.	ID=1693;Type=deletion;Left=chr22:29375468-29375893;Right=chr22:29376235-29376806
chr22	CG	SV	31407397	31408361	13	.	.	ID=1692;Type=deletion;Left=chr22:31407397-31407725+;Right=chr22:31408139-31408361+;Distance=742;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=MER20:DNA:MER1_type;LeftGenes=NM_001135774:-;NM_003490:-;NM_133633:-;RightGenes=NM_001135774:-;NM_003490:-;NM_133633:-;XRef=;Frequency=0.47
chr22	CG	SV	31407397	31407725	13	+	.	ID=1692;Type=deletion;Left=chr22:31407397-31407725;Right=chr22:31408139-31408361
chr22	CG	SV	31408139	31408361	13	+	.	ID=1692;Type=deletion;Left=chr22:31407397-31407725;Right=chr22:31408139-31408361
chr22	CG	SV	31625772	31626369	18	.	.	ID=1690;Type=complex;Left=chr22:31625772-31626278+;Right=chr22:31626090-31626369+;Distance=318;DiscordantMatePairAlignments=18;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MIR3:SINE:MIR;LeftGenes=NM_001135774:-;NM_003490:-;NM_133633:-;RightGenes=NM_001135774:-;NM_003490:-;NM_133633:-;XRef=rs6147595 (chr22:31625758-31626076);Frequency=1.00
chr22	CG	SV	31625772	31626278	18	+	.	ID=1690;Type=complex;Left=chr22:31625772-31626278;Right=chr22:31626090-31626369
chr22	CG	SV	31626090	31626369	18	+	.	ID=1690;Type=complex;Left=chr22:31625772-31626278;Right=chr22:31626090-31626369
chr22	CG	SV	31625772	31626532	29	.	.	ID=1691;Type=complex;Left=chr22:31625772-31626152+;Right=chr22:31626090-31626532+;Distance=318;DiscordantMatePairAlignments=29;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MIR3:SINE:MIR;LeftGenes=NM_001135774:-;NM_003490:-;NM_133633:-;RightGenes=NM_001135774:-;NM_003490:-;NM_133633:-;XRef=rs67512537 (chr22:31625772-31626090);Frequency=1.00
chr22	CG	SV	31625772	31626152	29	+	.	ID=1691;Type=complex;Left=chr22:31625772-31626152;Right=chr22:31626090-31626532
chr22	CG	SV	31626090	31626532	29	+	.	ID=1691;Type=complex;Left=chr22:31625772-31626152;Right=chr22:31626090-31626532
chr22	CG	SV	33975166	33976358	26	.	.	ID=1687;Type=deletion;Left=chr22:33975166-33975605+;Right=chr22:33976141-33976358+;Distance=975;DiscordantMatePairAlignments=26;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72164967 (chr22:33975164-33976139);Frequency=0.94
chr22	CG	SV	33975166	33975605	26	+	.	ID=1687;Type=deletion;Left=chr22:33975166-33975605;Right=chr22:33976141-33976358
chr22	CG	SV	33976141	33976358	26	+	.	ID=1687;Type=deletion;Left=chr22:33975166-33975605;Right=chr22:33976141-33976358
chr22	CG	SV	35473122	35478204	39	.	.	ID=1686;Type=deletion;Left=chr22:35473122-35473464+;Right=chr22:35477848-35478204+;Distance=4726;DiscordantMatePairAlignments=39;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71819381 (chr22:35473093-35477819);Frequency=1.00
chr22	CG	SV	35473122	35473464	39	+	.	ID=1686;Type=deletion;Left=chr22:35473122-35473464;Right=chr22:35477848-35478204
chr22	CG	SV	35477848	35478204	39	+	.	ID=1686;Type=deletion;Left=chr22:35473122-35473464;Right=chr22:35477848-35478204
chr22	CG	SV	37624054	37629017	43	.	.	ID=1684;Type=deletion;Left=chr22:37624054-37624420+;Right=chr22:37628634-37629017+;Distance=4580;DiscordantMatePairAlignments=43;LeftRepeat=L1MC4a:LINE:L1;Self chain;RightRepeat=LTR38-int:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs66483755 (chr22:37624054-37628634);Frequency=0.35
chr22	CG	SV	37624054	37624420	43	+	.	ID=1684;Type=deletion;Left=chr22:37624054-37624420;Right=chr22:37628634-37629017
chr22	CG	SV	37628634	37629017	43	+	.	ID=1684;Type=deletion;Left=chr22:37624054-37624420;Right=chr22:37628634-37629017
chr22	CG	SV	39124207	39125389	26	.	.	ID=1667;Type=deletion;Left=chr22:39124207-39124681+;Right=chr22:39125226-39125389+;Distance=1019;DiscordantMatePairAlignments=26;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_015705:+;RightGenes=NM_015705:+;XRef=;Frequency=0.47
chr22	CG	SV	39124207	39124681	26	+	.	ID=1667;Type=deletion;Left=chr22:39124207-39124681;Right=chr22:39125226-39125389
chr22	CG	SV	39125226	39125389	26	+	.	ID=1667;Type=deletion;Left=chr22:39124207-39124681;Right=chr22:39125226-39125389
chr22	CG	SV	39470072	39473064	22	.	.	ID=1666;Type=deletion;Left=chr22:39470072-39470447+;Right=chr22:39472593-39473064+;Distance=2521;DiscordantMatePairAlignments=22;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=LTR23:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr22	CG	SV	39470072	39470447	22	+	.	ID=1666;Type=deletion;Left=chr22:39470072-39470447;Right=chr22:39472593-39473064
chr22	CG	SV	39472593	39473064	22	+	.	ID=1666;Type=deletion;Left=chr22:39470072-39470447;Right=chr22:39472593-39473064
chr22	CG	SV	41431557	41432461	27	.	.	ID=1664;Type=deletion;Left=chr22:41431557-41431983+;Right=chr22:41432315-41432461+;Distance=758;DiscordantMatePairAlignments=27;LeftRepeat=AluSx:SINE:Alu;Tandem AAAAGA;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_017436:-;RightGenes=NM_017436:-;XRef=;Frequency=0.76
chr22	CG	SV	41431557	41431983	27	+	.	ID=1664;Type=deletion;Left=chr22:41431557-41431983;Right=chr22:41432315-41432461
chr22	CG	SV	41432315	41432461	27	+	.	ID=1664;Type=deletion;Left=chr22:41431557-41431983;Right=chr22:41432315-41432461
chr22	CG	SV	42006693	42007887	68	.	.	ID=1662;Type=deletion;Left=chr22:42006693-42006906+;Right=chr22:42007414-42007887+;Distance=721;DiscordantMatePairAlignments=68;LeftRepeat=Self chain;Tandem period 121;RightRepeat=Self chain;Tandem period 121;Tandem period 47;LeftGenes=NM_173050:-;RightGenes=NM_173050:-;XRef=;Frequency=0.59
chr22	CG	SV	42006693	42006906	68	+	.	ID=1662;Type=deletion;Left=chr22:42006693-42006906;Right=chr22:42007414-42007887
chr22	CG	SV	42007414	42007887	68	+	.	ID=1662;Type=deletion;Left=chr22:42006693-42006906;Right=chr22:42007414-42007887
chr22	CG	SV	43631106	43632357	45	.	.	ID=1660;Type=deletion;Left=chr22:43631106-43631560+;Right=chr22:43631772-43632357+;Distance=666;DiscordantMatePairAlignments=45;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSp:SINE:Alu;LeftGenes=NM_001017526:+;NM_181334:+;NM_181335:+;RightGenes=NM_001017526:+;NM_181334:+;NM_181335:+;XRef=rs72110256 (chr22:43631077-43631743);Frequency=0.29
chr22	CG	SV	43631106	43631560	45	+	.	ID=1660;Type=deletion;Left=chr22:43631106-43631560;Right=chr22:43631772-43632357
chr22	CG	SV	43631772	43632357	45	+	.	ID=1660;Type=deletion;Left=chr22:43631106-43631560;Right=chr22:43631772-43632357
chr22	CG	SV	44102628	44103270	11	.	.	ID=1658;Type=deletion;Left=chr22:44102628-44103088+;Right=chr22:44102956-44103270+;Distance=328;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 82;RightRepeat=Self chain;LeftGenes=NM_001104595:+;NM_017911:+;RightGenes=NM_001104595:+;NM_017911:+;XRef=rs66592589 (chr22:44102544-44102872);Frequency=0.65
chr22	CG	SV	44102628	44103088	11	+	.	ID=1658;Type=deletion;Left=chr22:44102628-44103088;Right=chr22:44102956-44103270
chr22	CG	SV	44102956	44103270	11	+	.	ID=1658;Type=deletion;Left=chr22:44102628-44103088;Right=chr22:44102956-44103270
chr22	CG	SV	47023887	47024650	33	.	.	ID=1655;Type=deletion;Left=chr22:47023887-47024298+;Right=chr22:47024205-47024650+;Distance=318;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67189063 (chr22:47023887-47024205);Frequency=0.82
chr22	CG	SV	47023887	47024298	33	+	.	ID=1655;Type=deletion;Left=chr22:47023887-47024298;Right=chr22:47024205-47024650
chr22	CG	SV	47024205	47024650	33	+	.	ID=1655;Type=deletion;Left=chr22:47023887-47024298;Right=chr22:47024205-47024650
chr22	CG	SV	47450166	47451280	22	.	.	ID=1654;Type=deletion;Left=chr22:47450166-47450623+;Right=chr22:47451027-47451280+;Distance=861;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;Tandem period 41;RightRepeat=Self chain;Tandem period 41;LeftGenes=NM_001082967:+;NM_015381:+;RightGenes=NM_001082967:+;NM_015381:+;XRef=rs71194978 (chr22:47450008-47450787);Frequency=0.35
chr22	CG	SV	47450166	47450623	22	+	.	ID=1654;Type=deletion;Left=chr22:47450166-47450623;Right=chr22:47451027-47451280
chr22	CG	SV	47451027	47451280	22	+	.	ID=1654;Type=deletion;Left=chr22:47450166-47450623;Right=chr22:47451027-47451280
chrX	CG	SV	1158370	1158865	21	.	.	ID=705;Type=tandem-duplication;Left=chrX:1158370-1158621-;Right=chrX:1158663-1158865-;Distance=244;DiscordantMatePairAlignments=21;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chrX	CG	SV	1158370	1158621	21	-	.	ID=705;Type=tandem-duplication;Left=chrX:1158370-1158621;Right=chrX:1158663-1158865
chrX	CG	SV	1158663	1158865	21	-	.	ID=705;Type=tandem-duplication;Left=chrX:1158370-1158621;Right=chrX:1158663-1158865
chrX	CG	SV	1176106	1176729	28	.	.	ID=1647;Type=deletion;Left=chrX:1176106-1176580+;Right=chrX:1176520-1176729+;Distance=414;DiscordantMatePairAlignments=28;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem period 138;RightRepeat=AluSg:SINE:Alu;Self chain;Tandem period 138;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chrX	CG	SV	1176106	1176580	28	+	.	ID=1647;Type=deletion;Left=chrX:1176106-1176580;Right=chrX:1176520-1176729
chrX	CG	SV	1176520	1176729	28	+	.	ID=1647;Type=deletion;Left=chrX:1176106-1176580;Right=chrX:1176520-1176729
chrX	CG	SV	1682585	1683250	60	.	.	ID=1643;Type=deletion;Left=chrX:1682585-1683064+;Right=chrX:1682964-1683250+;Distance=379;DiscordantMatePairAlignments=60;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=NM_004043:+;RightGenes=NM_004043:+;XRef=rs67460587 (chrX:1682521-1682895);Frequency=0.47
chrX	CG	SV	1682585	1683064	60	+	.	ID=1643;Type=deletion;Left=chrX:1682585-1683064;Right=chrX:1682964-1683250
chrX	CG	SV	1682964	1683250	60	+	.	ID=1643;Type=deletion;Left=chrX:1682585-1683064;Right=chrX:1682964-1683250
chrX	CG	SV	1871101	1872073	157	.	.	ID=1641;Type=deletion;Left=chrX:1871101-1871445+;Right=chrX:1871700-1872073+;Distance=599;DiscordantMatePairAlignments=157;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs72117520 (chrX:1870931-1871530);Frequency=0.41
chrX	CG	SV	1871101	1871445	157	+	.	ID=1641;Type=deletion;Left=chrX:1871101-1871445;Right=chrX:1871700-1872073
chrX	CG	SV	1871700	1872073	157	+	.	ID=1641;Type=deletion;Left=chrX:1871101-1871445;Right=chrX:1871700-1872073
chrX	CG	SV	2302554	2305274	44	.	.	ID=1640;Type=deletion;Left=chrX:2302554-2302956+;Right=chrX:2304811-2305274+;Distance=2257;DiscordantMatePairAlignments=44;LeftRepeat=AluSp:SINE:Alu;SegDup;Self chain;RightRepeat=AluSc:SINE:Alu;SegDup;Self chain;LeftGenes=NM_145177:-;RightGenes=NM_145177:-;XRef=;Frequency=0.18
chrX	CG	SV	2302554	2302956	44	+	.	ID=1640;Type=deletion;Left=chrX:2302554-2302956;Right=chrX:2304811-2305274
chrX	CG	SV	2304811	2305274	44	+	.	ID=1640;Type=deletion;Left=chrX:2302554-2302956;Right=chrX:2304811-2305274
chrX	CG	SV	2506771	2506930	11	.	.	ID=703;Type=tandem-duplication;Left=chrX:2506771-2506859-;Right=chrX:2506856-2506930-;Distance=71;DiscordantMatePairAlignments=11;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chrX	CG	SV	2506771	2506859	11	-	.	ID=703;Type=tandem-duplication;Left=chrX:2506771-2506859;Right=chrX:2506856-2506930
chrX	CG	SV	2506856	2506930	11	-	.	ID=703;Type=tandem-duplication;Left=chrX:2506771-2506859;Right=chrX:2506856-2506930
chrX	CG	SV	2957385	89432558	17	.	.	ID=4202;Type=probable-inversion;Left=chrX:2957385-2957632+;Right=chrX:89432171-89432558-;Distance=86475173;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=L1MEb:LINE:L1;SegDup;Self chain;LeftGenes=NM_001011719:+;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	2957385	2957632	17	+	.	ID=4202;Type=probable-inversion;Left=chrX:2957385-2957632;Right=chrX:89432171-89432558
chrX	CG	SV	89432171	89432558	17	+	.	ID=4202;Type=probable-inversion;Left=chrX:2957385-2957632;Right=chrX:89432171-89432558
chrX	CG	SV	4914723	4915398	17	.	.	ID=1638;Type=deletion;Left=chrX:4914723-4915215+;Right=chrX:4915038-4915398+;Distance=315;DiscordantMatePairAlignments=17;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs35641367 (chrX:4914707-4915022);Frequency=1.00
chrX	CG	SV	4914723	4915215	17	+	.	ID=1638;Type=deletion;Left=chrX:4914723-4915215;Right=chrX:4915038-4915398
chrX	CG	SV	4915038	4915398	17	+	.	ID=1638;Type=deletion;Left=chrX:4914723-4915215;Right=chrX:4915038-4915398
chrX	CG	SV	5065347	5067879	45	.	.	ID=1637;Type=deletion;Left=chrX:5065347-5065691+;Right=chrX:5067503-5067879+;Distance=2156;DiscordantMatePairAlignments=45;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67919263 (chrX:5065343-5067499);Frequency=0.94
chrX	CG	SV	5065347	5065691	45	+	.	ID=1637;Type=deletion;Left=chrX:5065347-5065691;Right=chrX:5067503-5067879
chrX	CG	SV	5067503	5067879	45	+	.	ID=1637;Type=deletion;Left=chrX:5065347-5065691;Right=chrX:5067503-5067879
chrX	CG	SV	5580351	5581124	27	.	.	ID=1636;Type=deletion;Left=chrX:5580351-5580765+;Right=chrX:5580695-5581124+;Distance=344;DiscordantMatePairAlignments=27;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10526255 (chrX:5580351-5580695);Frequency=0.82
chrX	CG	SV	5580351	5580765	27	+	.	ID=1636;Type=deletion;Left=chrX:5580351-5580765;Right=chrX:5580695-5581124
chrX	CG	SV	5580695	5581124	27	+	.	ID=1636;Type=deletion;Left=chrX:5580351-5580765;Right=chrX:5580695-5581124
chrX	CG	SV	5738738	5740796	81	.	.	ID=26;Type=distal-duplication;Left=chrX:5738738-5739124-;Right=chrX:5740611-5740796+;Distance=1487;DiscordantMatePairAlignments=81;LeftRepeat=Self chain;RightRepeat=Self chain;THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	5738738	5739124	81	-	.	ID=26;Type=distal-duplication;Left=chrX:5738738-5739124;Right=chrX:5740611-5740796
chrX	CG	SV	5740611	5740796	81	-	.	ID=26;Type=distal-duplication;Left=chrX:5738738-5739124;Right=chrX:5740611-5740796
chrX	CG	SV	5739126	5740791	35	.	.	ID=4210;Type=distal-duplication;Left=chrX:5739126-5739542+;Right=chrX:5740639-5740791-;Distance=1665;DiscordantMatePairAlignments=35;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	5739126	5739542	35	+	.	ID=4210;Type=distal-duplication;Left=chrX:5739126-5739542;Right=chrX:5740639-5740791
chrX	CG	SV	5740639	5740791	35	+	.	ID=4210;Type=distal-duplication;Left=chrX:5739126-5739542;Right=chrX:5740639-5740791
chrX	CG	SV	11490196	13753775	15	.	.	ID=25;Type=probable-inversion;Left=chrX:11490196-11490715-;Right=chrX:13753204-13753775+;Distance=2262489;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=MLT1C:LTR:MaLR;Self chain;LeftGenes=NM_006125:-;NM_013427:-;RightGenes=NM_001001994:-;XRef=;Frequency=0.00
chrX	CG	SV	11490196	11490715	15	-	.	ID=25;Type=probable-inversion;Left=chrX:11490196-11490715;Right=chrX:13753204-13753775
chrX	CG	SV	13753204	13753775	15	-	.	ID=25;Type=probable-inversion;Left=chrX:11490196-11490715;Right=chrX:13753204-13753775
chrX	CG	SV	11863113	11869882	133	.	.	ID=1635;Type=deletion;Left=chrX:11863113-11863583+;Right=chrX:11869363-11869882+;Distance=6250;DiscordantMatePairAlignments=133;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67857742 (chrX:11863120-11869370);Frequency=0.47
chrX	CG	SV	11863113	11863583	133	+	.	ID=1635;Type=deletion;Left=chrX:11863113-11863583;Right=chrX:11869363-11869882
chrX	CG	SV	11869363	11869882	133	+	.	ID=1635;Type=deletion;Left=chrX:11863113-11863583;Right=chrX:11869363-11869882
chrX	CG	SV	16337606	16338280	79	.	.	ID=1634;Type=deletion;Left=chrX:16337606-16338025+;Right=chrX:16338139-16338280+;Distance=533;DiscordantMatePairAlignments=79;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	16337606	16338025	79	+	.	ID=1634;Type=deletion;Left=chrX:16337606-16338025;Right=chrX:16338139-16338280
chrX	CG	SV	16338139	16338280	79	+	.	ID=1634;Type=deletion;Left=chrX:16337606-16338025;Right=chrX:16338139-16338280
chrX	CG	SV	17430551	17431006	22	.	.	ID=1631;Type=complex;Left=chrX:17430551-17431074+;Right=chrX:17430866-17431006+;Distance=315;DiscordantMatePairAlignments=22;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_198270:+;RightGenes=NM_198270:+;XRef=;Frequency=0.88
chrX	CG	SV	17430551	17431074	22	+	.	ID=1631;Type=complex;Left=chrX:17430551-17431074;Right=chrX:17430866-17431006
chrX	CG	SV	17430866	17431006	22	+	.	ID=1631;Type=complex;Left=chrX:17430551-17431074;Right=chrX:17430866-17431006
chrX	CG	SV	17430551	17431326	43	.	.	ID=1632;Type=complex;Left=chrX:17430551-17430999+;Right=chrX:17430866-17431326+;Distance=315;DiscordantMatePairAlignments=43;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_198270:+;RightGenes=NM_198270:+;XRef=rs66968754 (chrX:17430537-17430852);Frequency=0.88
chrX	CG	SV	17430551	17430999	43	+	.	ID=1632;Type=complex;Left=chrX:17430551-17430999;Right=chrX:17430866-17431326
chrX	CG	SV	17430866	17431326	43	+	.	ID=1632;Type=complex;Left=chrX:17430551-17430999;Right=chrX:17430866-17431326
chrX	CG	SV	22582499	22583264	19	.	.	ID=1630;Type=deletion;Left=chrX:22582499-22582925+;Right=chrX:22582814-22583264+;Distance=315;DiscordantMatePairAlignments=19;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=MER5A:DNA:MER1_type;Self chain;LeftGenes=;RightGenes=;XRef=rs67674328 (chrX:22582499-22582814);Frequency=0.53
chrX	CG	SV	22582499	22582925	19	+	.	ID=1630;Type=deletion;Left=chrX:22582499-22582925;Right=chrX:22582814-22583264
chrX	CG	SV	22582814	22583264	19	+	.	ID=1630;Type=deletion;Left=chrX:22582499-22582925;Right=chrX:22582814-22583264
chrX	CG	SV	24202636	24203160	19	.	.	ID=1628;Type=deletion;Left=chrX:24202636-24203104+;Right=chrX:24202968-24203160+;Distance=332;DiscordantMatePairAlignments=19;LeftRepeat=L1MB7:LINE:L1;Self chain;RightRepeat=L1MB7:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	24202636	24203104	19	+	.	ID=1628;Type=deletion;Left=chrX:24202636-24203104;Right=chrX:24202968-24203160
chrX	CG	SV	24202968	24203160	19	+	.	ID=1628;Type=deletion;Left=chrX:24202636-24203104;Right=chrX:24202968-24203160
chrX	CG	SV	40390131	40390654	37	.	.	ID=1625;Type=deletion;Left=chrX:40390131-40390623+;Right=chrX:40390455-40390654+;Distance=324;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_144970:-;RightGenes=NM_144970:-;XRef=;Frequency=1.00
chrX	CG	SV	40390131	40390623	37	+	.	ID=1625;Type=deletion;Left=chrX:40390131-40390623;Right=chrX:40390455-40390654
chrX	CG	SV	40390455	40390654	37	+	.	ID=1625;Type=deletion;Left=chrX:40390131-40390623;Right=chrX:40390455-40390654
chrX	CG	SV	45472518	45473024	16	.	.	ID=1622;Type=deletion;Left=chrX:45472518-45472974+;Right=chrX:45472825-45473024+;Distance=307;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=HAL1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chrX	CG	SV	45472518	45472974	16	+	.	ID=1622;Type=deletion;Left=chrX:45472518-45472974;Right=chrX:45472825-45473024
chrX	CG	SV	45472825	45473024	16	+	.	ID=1622;Type=deletion;Left=chrX:45472518-45472974;Right=chrX:45472825-45473024
chrX	CG	SV	52903003	55695675	19	.	.	ID=700;Type=distal-duplication;Left=chrX:52903003-52903445-;Right=chrX:55695249-55695675-;Distance=2792230;DiscordantMatePairAlignments=19;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	52903003	52903445	19	-	.	ID=700;Type=distal-duplication;Left=chrX:52903003-52903445;Right=chrX:55695249-55695675
chrX	CG	SV	55695249	55695675	19	-	.	ID=700;Type=distal-duplication;Left=chrX:52903003-52903445;Right=chrX:55695249-55695675
chrX	CG	SV	52904508	52907085	57	.	.	ID=1618;Type=deletion;Left=chrX:52904508-52904883+;Right=chrX:52906779-52907085+;Distance=2271;DiscordantMatePairAlignments=57;LeftRepeat=L1PA3:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	52904508	52904883	57	+	.	ID=1618;Type=deletion;Left=chrX:52904508-52904883;Right=chrX:52906779-52907085
chrX	CG	SV	52906779	52907085	57	+	.	ID=1618;Type=deletion;Left=chrX:52904508-52904883;Right=chrX:52906779-52907085
chrX	CG	SV	52908845	55695954	16	.	.	ID=1616;Type=distal-duplication;Left=chrX:52908845-52909216+;Right=chrX:55695836-55695954+;Distance=2786991;DiscordantMatePairAlignments=16;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_130776:-;NM_133179:-;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	52908845	52909216	16	+	.	ID=1616;Type=distal-duplication;Left=chrX:52908845-52909216;Right=chrX:55695836-55695954
chrX	CG	SV	55695836	55695954	16	+	.	ID=1616;Type=distal-duplication;Left=chrX:52908845-52909216;Right=chrX:55695836-55695954
chrX	CG	SV	55189472	55202390	127	.	.	ID=1617;Type=deletion;Left=chrX:55189472-55189887+;Right=chrX:55202293-55202390+;Distance=12821;DiscordantMatePairAlignments=127;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001166699:-;NM_001166700:-;NM_001166701:-;NM_001166702:-;NM_001166703:-;NM_001166704:-;NM_138362:-;NR_030722:-;RightGenes=NM_001166699:-;NM_001166700:-;NM_001166701:-;NM_001166702:-;NM_001166703:-;NM_001166704:-;NM_138362:-;NR_030722:-;XRef=;Frequency=1.00
chrX	CG	SV	55189472	55189887	127	+	.	ID=1617;Type=deletion;Left=chrX:55189472-55189887;Right=chrX:55202293-55202390
chrX	CG	SV	55202293	55202390	127	+	.	ID=1617;Type=deletion;Left=chrX:55189472-55189887;Right=chrX:55202293-55202390
chrX	CG	SV	69363395	69363478	11	.	.	ID=4206;Type=distal-duplication;Left=chrX:69363395-69363582+;Right=chrX:69363392-69363478-;Distance=83;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chrX	CG	SV	69363395	69363582	11	+	.	ID=4206;Type=distal-duplication;Left=chrX:69363395-69363582;Right=chrX:69363392-69363478
chrX	CG	SV	69363392	69363478	11	+	.	ID=4206;Type=distal-duplication;Left=chrX:69363395-69363582;Right=chrX:69363392-69363478
chrX	CG	SV	69363324	69363847	17	.	.	ID=18;Type=distal-duplication;Left=chrX:69363324-69363395-;Right=chrX:69363467-69363847+;Distance=72;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chrX	CG	SV	69363324	69363395	17	-	.	ID=18;Type=distal-duplication;Left=chrX:69363324-69363395;Right=chrX:69363467-69363847
chrX	CG	SV	69363467	69363847	17	-	.	ID=18;Type=distal-duplication;Left=chrX:69363324-69363395;Right=chrX:69363467-69363847
chrX	CG	SV	70226852	71661517	10	.	.	ID=696;Type=tandem-duplication;Left=chrX:70226852-70227303-;Right=chrX:71661125-71661517-;Distance=1434214;DiscordantMatePairAlignments=10;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=MER1B:DNA:MER1_type;Self chain;LeftGenes=;RightGenes=NM_001166418:-;NM_001166419:-;NM_001166448:-;NM_018486:-;XRef=;Frequency=0.00
chrX	CG	SV	70226852	70227303	10	-	.	ID=696;Type=tandem-duplication;Left=chrX:70226852-70227303;Right=chrX:71661125-71661517
chrX	CG	SV	71661125	71661517	10	-	.	ID=696;Type=tandem-duplication;Left=chrX:70226852-70227303;Right=chrX:71661125-71661517
chrX	CG	SV	71039956	71040758	13	.	.	ID=1614;Type=deletion;Left=chrX:71039956-71040308+;Right=chrX:71040273-71040758+;Distance=317;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs35563923 (chrX:71039956-71040273);Frequency=0.94
chrX	CG	SV	71039956	71040308	13	+	.	ID=1614;Type=deletion;Left=chrX:71039956-71040308;Right=chrX:71040273-71040758
chrX	CG	SV	71040273	71040758	13	+	.	ID=1614;Type=deletion;Left=chrX:71039956-71040308;Right=chrX:71040273-71040758
chrX	CG	SV	77008137	77011096	28	.	.	ID=1613;Type=deletion;Left=chrX:77008137-77008504+;Right=chrX:77010618-77011096+;Distance=2481;DiscordantMatePairAlignments=28;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=NM_032121:-;RightGenes=NM_032121:-;XRef=rs72063817 (chrX:77008123-77010604);Frequency=0.94
chrX	CG	SV	77008137	77008504	28	+	.	ID=1613;Type=deletion;Left=chrX:77008137-77008504;Right=chrX:77010618-77011096
chrX	CG	SV	77010618	77011096	28	+	.	ID=1613;Type=deletion;Left=chrX:77008137-77008504;Right=chrX:77010618-77011096
chrX	CG	SV	77583512	77584607	291	.	.	ID=1612;Type=deletion;Left=chrX:77583512-77583977+;Right=chrX:77584110-77584607+;Distance=598;DiscordantMatePairAlignments=291;LeftRepeat=HUERS-P1:LTR:ERV1;Self chain;RightRepeat=HUERS-P1:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	77583512	77583977	291	+	.	ID=1612;Type=deletion;Left=chrX:77583512-77583977;Right=chrX:77584110-77584607
chrX	CG	SV	77584110	77584607	291	+	.	ID=1612;Type=deletion;Left=chrX:77583512-77583977;Right=chrX:77584110-77584607
chrX	CG	SV	78808545	78810019	27	.	.	ID=4205;Type=complex;Left=chrX:78808545-78808928+;Right=chrX:78809878-78810019-;Distance=1474;DiscordantMatePairAlignments=27;LeftRepeat=L1PA16:LINE:L1;Self chain;RightRepeat=L1PA16:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	78808545	78808928	27	+	.	ID=4205;Type=complex;Left=chrX:78808545-78808928;Right=chrX:78809878-78810019
chrX	CG	SV	78809878	78810019	27	+	.	ID=4205;Type=complex;Left=chrX:78808545-78808928;Right=chrX:78809878-78810019
chrX	CG	SV	78808545	78813048	40	.	.	ID=1611;Type=complex;Left=chrX:78808545-78808841+;Right=chrX:78812727-78813048+;Distance=4182;DiscordantMatePairAlignments=40;LeftRepeat=L1PA16:LINE:L1;Self chain;RightRepeat=L1MA1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chrX	CG	SV	78808545	78808841	40	+	.	ID=1611;Type=complex;Left=chrX:78808545-78808841;Right=chrX:78812727-78813048
chrX	CG	SV	78812727	78813048	40	+	.	ID=1611;Type=complex;Left=chrX:78808545-78808841;Right=chrX:78812727-78813048
chrX	CG	SV	78809768	78813228	24	.	.	ID=17;Type=complex;Left=chrX:78809768-78809881-;Right=chrX:78812735-78813228+;Distance=2854;DiscordantMatePairAlignments=24;LeftRepeat=L1PA16:LINE:L1;Self chain;RightRepeat=L1MA1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chrX	CG	SV	78809768	78809881	24	-	.	ID=17;Type=complex;Left=chrX:78809768-78809881;Right=chrX:78812735-78813228
chrX	CG	SV	78812735	78813228	24	-	.	ID=17;Type=complex;Left=chrX:78809768-78809881;Right=chrX:78812735-78813228
chrX	CG	SV	78833104	78835807	16	.	.	ID=1610;Type=deletion;Left=chrX:78833104-78833399+;Right=chrX:78835492-78835807+;Distance=2388;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;RightRepeat=L1PA7:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs67757067 (chrX:78833104-78835491);Frequency=0.41
chrX	CG	SV	78833104	78833399	16	+	.	ID=1610;Type=deletion;Left=chrX:78833104-78833399;Right=chrX:78835492-78835807
chrX	CG	SV	78835492	78835807	16	+	.	ID=1610;Type=deletion;Left=chrX:78833104-78833399;Right=chrX:78835492-78835807
chrX	CG	SV	80929159	80930041	28	.	.	ID=1608;Type=deletion;Left=chrX:80929159-80929516+;Right=chrX:80929739-80930041+;Distance=580;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;THE1B-int:LTR:MaLR;RightRepeat=Self chain;THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	80929159	80929516	28	+	.	ID=1608;Type=deletion;Left=chrX:80929159-80929516;Right=chrX:80929739-80930041
chrX	CG	SV	80929739	80930041	28	+	.	ID=1608;Type=deletion;Left=chrX:80929159-80929516;Right=chrX:80929739-80930041
chrX	CG	SV	80983299	80989729	84	.	.	ID=1607;Type=deletion;Left=chrX:80983299-80983691+;Right=chrX:80989350-80989729+;Distance=6051;DiscordantMatePairAlignments=84;LeftRepeat=L1MC3:LINE:L1;Self chain;RightRepeat=L1MC3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	80983299	80983691	84	+	.	ID=1607;Type=deletion;Left=chrX:80983299-80983691;Right=chrX:80989350-80989729
chrX	CG	SV	80989350	80989729	84	+	.	ID=1607;Type=deletion;Left=chrX:80983299-80983691;Right=chrX:80989350-80989729
chrX	CG	SV	84395975	84396767	21	.	.	ID=1605;Type=deletion;Left=chrX:84395975-84396237+;Right=chrX:84396308-84396767+;Distance=333;DiscordantMatePairAlignments=21;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;Tandem A;LeftGenes=NM_021998:+;RightGenes=NM_021998:+;XRef=;Frequency=0.24
chrX	CG	SV	84395975	84396237	21	+	.	ID=1605;Type=deletion;Left=chrX:84395975-84396237;Right=chrX:84396308-84396767
chrX	CG	SV	84396308	84396767	21	+	.	ID=1605;Type=deletion;Left=chrX:84395975-84396237;Right=chrX:84396308-84396767
chrX	CG	SV	85491830	85496745	61	.	.	ID=1604;Type=deletion;Left=chrX:85491830-85492289+;Right=chrX:85496522-85496745+;Distance=4692;DiscordantMatePairAlignments=61;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=(CAAAA)n:Simple_repeat:Simple_repeat;Self chain;Tandem AATAA;LeftGenes=NM_001139514:+;NM_001139515:+;NM_053281:+;RightGenes=NM_001139514:+;NM_001139515:+;NM_053281:+;XRef=rs67983647 (chrX:85491839-85496531);Frequency=0.88
chrX	CG	SV	85491830	85492289	61	+	.	ID=1604;Type=deletion;Left=chrX:85491830-85492289;Right=chrX:85496522-85496745
chrX	CG	SV	85496522	85496745	61	+	.	ID=1604;Type=deletion;Left=chrX:85491830-85492289;Right=chrX:85496522-85496745
chrX	CG	SV	86165707	86167202	120	.	.	ID=1601;Type=deletion;Left=chrX:86165707-86166154+;Right=chrX:86166792-86167202+;Distance=1085;DiscordantMatePairAlignments=120;LeftRepeat=L1P4:LINE:L1;Self chain;RightRepeat=(TA)n:Simple_repeat:Simple_repeat;Self chain;Tandem TA;Tandem period 11;Tandem period 9;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chrX	CG	SV	86165707	86166154	120	+	.	ID=1601;Type=deletion;Left=chrX:86165707-86166154;Right=chrX:86166792-86167202
chrX	CG	SV	86166792	86167202	120	+	.	ID=1601;Type=deletion;Left=chrX:86165707-86166154;Right=chrX:86166792-86167202
chrX	CG	SV	86173430	86174278	53	.	.	ID=1600;Type=deletion;Left=chrX:86173430-86173859+;Right=chrX:86173883-86174278+;Distance=453;DiscordantMatePairAlignments=53;LeftRepeat=L1PA15:LINE:L1;Self chain;RightRepeat=L1PA15:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71894066 (chrX:86173430-86173880);Frequency=0.71
chrX	CG	SV	86173430	86173859	53	+	.	ID=1600;Type=deletion;Left=chrX:86173430-86173859;Right=chrX:86173883-86174278
chrX	CG	SV	86173883	86174278	53	+	.	ID=1600;Type=deletion;Left=chrX:86173430-86173859;Right=chrX:86173883-86174278
chrX	CG	SV	89465022	89467490	50	.	.	ID=1597;Type=deletion;Left=chrX:89465022-89465426+;Right=chrX:89467036-89467490+;Distance=2014;DiscordantMatePairAlignments=50;LeftRepeat=MLT-int:LTR:MaLR;SegDup;Self chain;RightRepeat=L1MB3:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chrX	CG	SV	89465022	89465426	50	+	.	ID=1597;Type=deletion;Left=chrX:89465022-89465426;Right=chrX:89467036-89467490
chrX	CG	SV	89467036	89467490	50	+	.	ID=1597;Type=deletion;Left=chrX:89465022-89465426;Right=chrX:89467036-89467490
chrX	CG	SV	90170015	90171207	284	.	.	ID=1596;Type=deletion;Left=chrX:90170015-90170532+;Right=chrX:90170744-90171207+;Distance=729;DiscordantMatePairAlignments=284;LeftRepeat=LTR9B:LTR:ERV1;SegDup;Self chain;RightRepeat=L1MA9:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chrX	CG	SV	90170015	90170532	284	+	.	ID=1596;Type=deletion;Left=chrX:90170015-90170532;Right=chrX:90170744-90171207
chrX	CG	SV	90170744	90171207	284	+	.	ID=1596;Type=deletion;Left=chrX:90170015-90170532;Right=chrX:90170744-90171207
chrX	CG	SV	94937503	94938589	31	.	.	ID=1595;Type=deletion;Left=chrX:94937503-94937829+;Right=chrX:94938136-94938589+;Distance=633;DiscordantMatePairAlignments=31;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs72179039 (chrX:94937503-94938136);Frequency=0.88
chrX	CG	SV	94937503	94937829	31	+	.	ID=1595;Type=deletion;Left=chrX:94937503-94937829;Right=chrX:94938136-94938589
chrX	CG	SV	94938136	94938589	31	+	.	ID=1595;Type=deletion;Left=chrX:94937503-94937829;Right=chrX:94938136-94938589
chrX	CG	SV	114448780	114451020	11	.	.	ID=1594;Type=deletion;Left=chrX:114448780-114449222+;Right=chrX:114450769-114451020+;Distance=1989;DiscordantMatePairAlignments=11;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L1MB2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chrX	CG	SV	114448780	114449222	11	+	.	ID=1594;Type=deletion;Left=chrX:114448780-114449222;Right=chrX:114450769-114451020
chrX	CG	SV	114450769	114451020	11	+	.	ID=1594;Type=deletion;Left=chrX:114448780-114449222;Right=chrX:114450769-114451020
chrX	CG	SV	116338389	116339213	21	.	.	ID=1592;Type=deletion;Left=chrX:116338389-116338879+;Right=chrX:116338708-116339213+;Distance=319;DiscordantMatePairAlignments=21;LeftRepeat=AluY:SINE:Alu;RightRepeat=MER5A:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs67439803 (chrX:116338373-116338692);Frequency=0.53
chrX	CG	SV	116338389	116338879	21	+	.	ID=1592;Type=deletion;Left=chrX:116338389-116338879;Right=chrX:116338708-116339213
chrX	CG	SV	116338708	116339213	21	+	.	ID=1592;Type=deletion;Left=chrX:116338389-116338879;Right=chrX:116338708-116339213
chrX	CG	SV	117905950	117908333	25	.	.	ID=1591;Type=deletion;Left=chrX:117905950-117906644+;Right=chrX:117907853-117908333+;Distance=1903;DiscordantMatePairAlignments=25;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	117905950	117906644	25	+	.	ID=1591;Type=deletion;Left=chrX:117905950-117906644;Right=chrX:117907853-117908333
chrX	CG	SV	117907853	117908333	25	+	.	ID=1591;Type=deletion;Left=chrX:117905950-117906644;Right=chrX:117907853-117908333
chrX	CG	SV	118758268	118761026	11	.	.	ID=1590;Type=deletion;Left=chrX:118758268-118758747+;Right=chrX:118760865-118761026+;Distance=2597;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	118758268	118758747	11	+	.	ID=1590;Type=deletion;Left=chrX:118758268-118758747;Right=chrX:118760865-118761026
chrX	CG	SV	118760865	118761026	11	+	.	ID=1590;Type=deletion;Left=chrX:118758268-118758747;Right=chrX:118760865-118761026
chrX	CG	SV	130832975	130836405	87	.	.	ID=1585;Type=deletion;Left=chrX:130832975-130833193+;Right=chrX:130836311-130836405+;Distance=3336;DiscordantMatePairAlignments=87;LeftRepeat=AluSp:SINE:Alu;Self chain;RightRepeat=MER70-int:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chrX	CG	SV	130832975	130833193	87	+	.	ID=1585;Type=deletion;Left=chrX:130832975-130833193;Right=chrX:130836311-130836405
chrX	CG	SV	130836311	130836405	87	+	.	ID=1585;Type=deletion;Left=chrX:130832975-130833193;Right=chrX:130836311-130836405
chrX	CG	SV	131221256	131221959	50	.	.	ID=4199;Type=distal-duplication;Left=chrX:131221256-131221646+;Right=chrX:131221875-131221959-;Distance=703;DiscordantMatePairAlignments=50;LeftRepeat=MLT1B:LTR:MaLR;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	131221256	131221646	50	+	.	ID=4199;Type=distal-duplication;Left=chrX:131221256-131221646;Right=chrX:131221875-131221959
chrX	CG	SV	131221875	131221959	50	+	.	ID=4199;Type=distal-duplication;Left=chrX:131221256-131221646;Right=chrX:131221875-131221959
chrX	CG	SV	131220947	131221972	45	.	.	ID=10;Type=distal-duplication;Left=chrX:131220947-131221272-;Right=chrX:131221878-131221972+;Distance=606;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chrX	CG	SV	131220947	131221272	45	-	.	ID=10;Type=distal-duplication;Left=chrX:131220947-131221272;Right=chrX:131221878-131221972
chrX	CG	SV	131221878	131221972	45	-	.	ID=10;Type=distal-duplication;Left=chrX:131220947-131221272;Right=chrX:131221878-131221972
chrX	CG	SV	133989183	133989990	10	.	.	ID=464;Type=deletion;Left=chrX:133989183-133989476+;Right=chrX:133989734-133989990+;Distance=551;DiscordantMatePairAlignments=10;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=L1PB2:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chrX	CG	SV	133989183	133989476	10	+	.	ID=464;Type=deletion;Left=chrX:133989183-133989476;Right=chrX:133989734-133989990
chrX	CG	SV	133989734	133989990	10	+	.	ID=464;Type=deletion;Left=chrX:133989183-133989476;Right=chrX:133989734-133989990
chrX	CG	SV	134985665	134986457	26	.	.	ID=463;Type=deletion;Left=chrX:134985665-134986125+;Right=chrX:134985996-134986457+;Distance=331;DiscordantMatePairAlignments=26;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs67779071 (chrX:134985665-134985996);Frequency=1.00
chrX	CG	SV	134985665	134986125	26	+	.	ID=463;Type=deletion;Left=chrX:134985665-134986125;Right=chrX:134985996-134986457
chrX	CG	SV	134985996	134986457	26	+	.	ID=463;Type=deletion;Left=chrX:134985665-134986125;Right=chrX:134985996-134986457
chrX	CG	SV	138212569	138213013	21	.	.	ID=461;Type=complex;Left=chrX:138212569-138213118+;Right=chrX:138212895-138213013+;Distance=326;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	138212569	138213118	21	+	.	ID=461;Type=complex;Left=chrX:138212569-138213118;Right=chrX:138212895-138213013
chrX	CG	SV	138212895	138213013	21	+	.	ID=461;Type=complex;Left=chrX:138212569-138213118;Right=chrX:138212895-138213013
chrX	CG	SV	138212577	138213410	45	.	.	ID=462;Type=complex;Left=chrX:138212577-138213013+;Right=chrX:138212903-138213410+;Distance=326;DiscordantMatePairAlignments=45;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72185599 (chrX:138212577-138212903);Frequency=0.94
chrX	CG	SV	138212577	138213013	45	+	.	ID=462;Type=complex;Left=chrX:138212577-138213013;Right=chrX:138212903-138213410
chrX	CG	SV	138212903	138213410	45	+	.	ID=462;Type=complex;Left=chrX:138212577-138213013;Right=chrX:138212903-138213410
chrX	CG	SV	138984851	139048572	24	.	.	ID=690;Type=tandem-duplication;Left=chrX:138984851-138985358-;Right=chrX:139048484-139048572-;Distance=63214;DiscordantMatePairAlignments=24;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	138984851	138985358	24	-	.	ID=690;Type=tandem-duplication;Left=chrX:138984851-138985358;Right=chrX:139048484-139048572
chrX	CG	SV	139048484	139048572	24	-	.	ID=690;Type=tandem-duplication;Left=chrX:138984851-138985358;Right=chrX:139048484-139048572
chrX	CG	SV	144229768	144232650	130	.	.	ID=460;Type=deletion;Left=chrX:144229768-144230149+;Right=chrX:144232199-144232650+;Distance=2431;DiscordantMatePairAlignments=130;LeftRepeat=L1M1:LINE:L1;RightRepeat=MSTA:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	144229768	144230149	130	+	.	ID=460;Type=deletion;Left=chrX:144229768-144230149;Right=chrX:144232199-144232650
chrX	CG	SV	144232199	144232650	130	+	.	ID=460;Type=deletion;Left=chrX:144229768-144230149;Right=chrX:144232199-144232650
chrX	CG	SV	145750855	145751955	20	.	.	ID=458;Type=deletion;Left=chrX:145750855-145751240+;Right=chrX:145751645-145751955+;Distance=790;DiscordantMatePairAlignments=20;LeftRepeat=L1PA2:LINE:L1;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chrX	CG	SV	145750855	145751240	20	+	.	ID=458;Type=deletion;Left=chrX:145750855-145751240;Right=chrX:145751645-145751955
chrX	CG	SV	145751645	145751955	20	+	.	ID=458;Type=deletion;Left=chrX:145750855-145751240;Right=chrX:145751645-145751955
chrX	CG	SV	147317388	147319224	325	.	.	ID=457;Type=deletion;Left=chrX:147317388-147317866+;Right=chrX:147318927-147319224+;Distance=1539;DiscordantMatePairAlignments=325;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs68151473 (chrX:147317390-147318927);Frequency=0.82
chrX	CG	SV	147317388	147317866	325	+	.	ID=457;Type=deletion;Left=chrX:147317388-147317866;Right=chrX:147318927-147319224
chrX	CG	SV	147318927	147319224	325	+	.	ID=457;Type=deletion;Left=chrX:147317388-147317866;Right=chrX:147318927-147319224
chrX	CG	SV	154139109	154140566	106	.	.	ID=455;Type=deletion;Left=chrX:154139109-154139636+;Right=chrX:154140009-154140566+;Distance=900;DiscordantMatePairAlignments=106;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	154139109	154139636	106	+	.	ID=455;Type=deletion;Left=chrX:154139109-154139636;Right=chrX:154140009-154140566
chrX	CG	SV	154140009	154140566	106	+	.	ID=455;Type=deletion;Left=chrX:154139109-154139636;Right=chrX:154140009-154140566
chrX	CG	SV	154571654	154575214	11	.	.	ID=454;Type=deletion;Left=chrX:154571654-154571887+;Right=chrX:154574919-154575214+;Distance=3265;DiscordantMatePairAlignments=11;LeftRepeat=L1PA10:LINE:L1;RightRepeat=L1MA4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	154571654	154571887	11	+	.	ID=454;Type=deletion;Left=chrX:154571654-154571887;Right=chrX:154574919-154575214
chrX	CG	SV	154574919	154575214	11	+	.	ID=454;Type=deletion;Left=chrX:154571654-154571887;Right=chrX:154574919-154575214