chr1	CG	SV	815472	5649523	34	.	.	ID=1884;Type=complex;Left=chr1:815472-815629-;Right=chr1:5649117-5649523-;Distance=4833894;DiscordantMatePairAlignments=34;LeftRepeat=AluS:SINE:Alu;SegDup;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	815472	815629	34	-	.	ID=1884;Type=complex;Left=chr1:815472-815629;Right=chr1:5649117-5649523
chr1	CG	SV	5649117	5649523	34	-	.	ID=1884;Type=complex;Left=chr1:815472-815629;Right=chr1:5649117-5649523
chr1	CG	SV	816161	5650238	20	.	.	ID=4444;Type=complex;Left=chr1:816161-816609+;Right=chr1:5650073-5650238+;Distance=4833912;DiscordantMatePairAlignments=20;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	816161	816609	20	+	.	ID=4444;Type=complex;Left=chr1:816161-816609;Right=chr1:5650073-5650238
chr1	CG	SV	5650073	5650238	20	+	.	ID=4444;Type=complex;Left=chr1:816161-816609;Right=chr1:5650073-5650238
chr1	CG	SV	816176	5651105	17	.	.	ID=4445;Type=complex;Left=chr1:816176-816376+;Right=chr1:5650913-5651105+;Distance=4834737;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	816176	816376	17	+	.	ID=4445;Type=complex;Left=chr1:816176-816376;Right=chr1:5650913-5651105
chr1	CG	SV	5650913	5651105	17	+	.	ID=4445;Type=complex;Left=chr1:816176-816376;Right=chr1:5650913-5651105
chr1	CG	SV	953832	954735	97	.	.	ID=4450;Type=deletion;Left=chr1:953832-954496+;Right=chr1:954381-954735+;Distance=549;DiscordantMatePairAlignments=97;LeftRepeat=Self chain;Tandem period 61;RightRepeat=Self chain;Tandem period 61;LeftGenes=NM_198576:+;RightGenes=NM_198576:+;XRef=;Frequency=0.29
chr1	CG	SV	953832	954496	97	+	.	ID=4450;Type=deletion;Left=chr1:953832-954496;Right=chr1:954381-954735
chr1	CG	SV	954381	954735	97	+	.	ID=4450;Type=deletion;Left=chr1:953832-954496;Right=chr1:954381-954735
chr1	CG	SV	2908894	2909834	20	.	.	ID=4442;Type=deletion;Left=chr1:2908894-2909218+;Right=chr1:2909229-2909834+;Distance=335;DiscordantMatePairAlignments=20;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	2908894	2909218	20	+	.	ID=4442;Type=deletion;Left=chr1:2908894-2909218;Right=chr1:2909229-2909834
chr1	CG	SV	2909229	2909834	20	+	.	ID=4442;Type=deletion;Left=chr1:2908894-2909218;Right=chr1:2909229-2909834
chr1	CG	SV	3071725	3072575	10	.	.	ID=4441;Type=deletion;Left=chr1:3071725-3071953+;Right=chr1:3072229-3072575+;Distance=504;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 24;RightRepeat=Self chain;Tandem period 24;LeftGenes=NM_022114:+;NM_199454:+;RightGenes=NM_022114:+;NM_199454:+;XRef=;Frequency=0.18
chr1	CG	SV	3071725	3071953	10	+	.	ID=4441;Type=deletion;Left=chr1:3071725-3071953;Right=chr1:3072229-3072575
chr1	CG	SV	3072229	3072575	10	+	.	ID=4441;Type=deletion;Left=chr1:3071725-3071953;Right=chr1:3072229-3072575
chr1	CG	SV	4898978	4899580	13	.	.	ID=1882;Type=tandem-duplication;Left=chr1:4898978-4899267-;Right=chr1:4899493-4899580-;Distance=313;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 20;RightRepeat=Self chain;Tandem period 20;Tandem period 60;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	4898978	4899267	13	-	.	ID=1882;Type=tandem-duplication;Left=chr1:4898978-4899267;Right=chr1:4899493-4899580
chr1	CG	SV	4899493	4899580	13	-	.	ID=1882;Type=tandem-duplication;Left=chr1:4898978-4899267;Right=chr1:4899493-4899580
chr1	CG	SV	5650277	5651369	147	.	.	ID=4438;Type=complex;Left=chr1:5650277-5650514+;Right=chr1:5650712-5651369+;Distance=435;DiscordantMatePairAlignments=147;LeftRepeat=Self chain;Tandem period 100;Tandem period 34;Tandem period 66;RightRepeat=Self chain;Tandem period 100;Tandem period 34;Tandem period 66;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	5650277	5650514	147	+	.	ID=4438;Type=complex;Left=chr1:5650277-5650514;Right=chr1:5650712-5651369
chr1	CG	SV	5650712	5651369	147	+	.	ID=4438;Type=complex;Left=chr1:5650277-5650514;Right=chr1:5650712-5651369
chr1	CG	SV	5943284	5948928	47	.	.	ID=4437;Type=deletion;Left=chr1:5943284-5943740+;Right=chr1:5948663-5948928+;Distance=5379;DiscordantMatePairAlignments=47;LeftRepeat=Self chain;RightRepeat=MER72:LTR:ERV1;Self chain;LeftGenes=NM_015102:-;RightGenes=NM_015102:-;XRef=;Frequency=0.00
chr1	CG	SV	5943284	5943740	47	+	.	ID=4437;Type=deletion;Left=chr1:5943284-5943740;Right=chr1:5948663-5948928
chr1	CG	SV	5948663	5948928	47	+	.	ID=4437;Type=deletion;Left=chr1:5943284-5943740;Right=chr1:5948663-5948928
chr1	CG	SV	9393616	9393946	24	.	.	ID=1881;Type=tandem-duplication;Left=chr1:9393616-9393749-;Right=chr1:9393757-9393946-;Distance=197;DiscordantMatePairAlignments=24;LeftRepeat=Tandem period 16;Tandem period 24;Tandem period 8;RightRepeat=Tandem period 16;Tandem period 24;Tandem period 8;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	9393616	9393749	24	-	.	ID=1881;Type=tandem-duplication;Left=chr1:9393616-9393749;Right=chr1:9393757-9393946
chr1	CG	SV	9393757	9393946	24	-	.	ID=1881;Type=tandem-duplication;Left=chr1:9393616-9393749;Right=chr1:9393757-9393946
chr1	CG	SV	16763115	16766561	10	.	.	ID=1879;Type=tandem-duplication;Left=chr1:16763115-16763410-;Right=chr1:16766171-16766561-;Distance=3151;DiscordantMatePairAlignments=10;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_017940:-;RightGenes=NM_017940:-;XRef=;Frequency=0.59
chr1	CG	SV	16763115	16763410	10	-	.	ID=1879;Type=tandem-duplication;Left=chr1:16763115-16763410;Right=chr1:16766171-16766561
chr1	CG	SV	16766171	16766561	10	-	.	ID=1879;Type=tandem-duplication;Left=chr1:16763115-16763410;Right=chr1:16766171-16766561
chr1	CG	SV	16923891	232979318	384	.	.	ID=1206;Type=probable-inversion;Left=chr1:16923891-16924326-;Right=chr1:232978810-232979318+;Distance=216054484;DiscordantMatePairAlignments=384;LeftRepeat=SegDup;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	16923891	16924326	384	-	.	ID=1206;Type=probable-inversion;Left=chr1:16923891-16924326;Right=chr1:232978810-232979318
chr1	CG	SV	232978810	232979318	384	-	.	ID=1206;Type=probable-inversion;Left=chr1:16923891-16924326;Right=chr1:232978810-232979318
chr1	CG	SV	29593067	30651816	49	.	.	ID=1202;Type=probable-inversion;Left=chr1:29593067-29593426-;Right=chr1:30651405-30651816+;Distance=1057979;DiscordantMatePairAlignments=49;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	29593067	29593426	49	-	.	ID=1202;Type=probable-inversion;Left=chr1:29593067-29593426;Right=chr1:30651405-30651816
chr1	CG	SV	30651405	30651816	49	-	.	ID=1202;Type=probable-inversion;Left=chr1:29593067-29593426;Right=chr1:30651405-30651816
chr1	CG	SV	31171979	31173019	14	.	.	ID=4432;Type=deletion;Left=chr1:31171979-31172316+;Right=chr1:31172691-31173019+;Distance=712;DiscordantMatePairAlignments=14;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	31171979	31172316	14	+	.	ID=4432;Type=deletion;Left=chr1:31171979-31172316;Right=chr1:31172691-31173019
chr1	CG	SV	31172691	31173019	14	+	.	ID=4432;Type=deletion;Left=chr1:31171979-31172316;Right=chr1:31172691-31173019
chr1	CG	SV	31743929	31744412	12	.	.	ID=1200;Type=probable-inversion;Left=chr1:31743929-31744128-;Right=chr1:31744235-31744412+;Distance=107;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	31743929	31744128	12	-	.	ID=1200;Type=probable-inversion;Left=chr1:31743929-31744128;Right=chr1:31744235-31744412
chr1	CG	SV	31744235	31744412	12	-	.	ID=1200;Type=probable-inversion;Left=chr1:31743929-31744128;Right=chr1:31744235-31744412
chr1	CG	SV	32965973	32968725	25	.	.	ID=1877;Type=tandem-duplication;Left=chr1:32965973-32966456-;Right=chr1:32968534-32968725-;Distance=2269;DiscordantMatePairAlignments=25;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSp:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	32965973	32966456	25	-	.	ID=1877;Type=tandem-duplication;Left=chr1:32965973-32966456;Right=chr1:32968534-32968725
chr1	CG	SV	32968534	32968725	25	-	.	ID=1877;Type=tandem-duplication;Left=chr1:32965973-32966456;Right=chr1:32968534-32968725
chr1	CG	SV	43831883	43832473	41	.	.	ID=4703;Type=probable-inversion;Left=chr1:43831883-43832453+;Right=chr1:43832098-43832473-;Distance=590;DiscordantMatePairAlignments=41;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_002840:+;NM_130440:+;RightGenes=NM_002840:+;NM_130440:+;XRef=;Frequency=0.94
chr1	CG	SV	43831883	43832453	41	+	.	ID=4703;Type=probable-inversion;Left=chr1:43831883-43832453;Right=chr1:43832098-43832473
chr1	CG	SV	43832098	43832473	41	+	.	ID=4703;Type=probable-inversion;Left=chr1:43831883-43832453;Right=chr1:43832098-43832473
chr1	CG	SV	55241048	55241268	10	.	.	ID=1874;Type=tandem-duplication;Left=chr1:55241048-55241161-;Right=chr1:55241144-55241268-;Distance=107;DiscordantMatePairAlignments=10;LeftRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GATGGT;Tandem period 15;Tandem period 9;RightRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GATGGT;Tandem period 15;Tandem period 9;LeftGenes=NM_057176:+;RightGenes=NM_057176:+;XRef=;Frequency=0.94
chr1	CG	SV	55241048	55241161	10	-	.	ID=1874;Type=tandem-duplication;Left=chr1:55241048-55241161;Right=chr1:55241144-55241268
chr1	CG	SV	55241144	55241268	10	-	.	ID=1874;Type=tandem-duplication;Left=chr1:55241048-55241161;Right=chr1:55241144-55241268
chr1	CG	SV	56603702	56608114	103	.	.	ID=4427;Type=deletion;Left=chr1:56603702-56604229+;Right=chr1:56607557-56608114+;Distance=3855;DiscordantMatePairAlignments=103;LeftRepeat=L1MC4a:LINE:L1;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr1	CG	SV	56603702	56604229	103	+	.	ID=4427;Type=deletion;Left=chr1:56603702-56604229;Right=chr1:56607557-56608114
chr1	CG	SV	56607557	56608114	103	+	.	ID=4427;Type=deletion;Left=chr1:56603702-56604229;Right=chr1:56607557-56608114
chr1	CG	SV	56768278	56768934	92	.	.	ID=1873;Type=tandem-duplication;Left=chr1:56768278-56768620-;Right=chr1:56768583-56768934-;Distance=314;DiscordantMatePairAlignments=92;LeftRepeat=;RightRepeat=;LeftGenes=NM_003713:-;NM_177414:-;RightGenes=NM_003713:-;NM_177414:-;XRef=;Frequency=0.71
chr1	CG	SV	56768278	56768620	92	-	.	ID=1873;Type=tandem-duplication;Left=chr1:56768278-56768620;Right=chr1:56768583-56768934
chr1	CG	SV	56768583	56768934	92	-	.	ID=1873;Type=tandem-duplication;Left=chr1:56768278-56768620;Right=chr1:56768583-56768934
chr1	CG	SV	58516501	58517786	126	.	.	ID=4424;Type=deletion;Left=chr1:58516501-58516989+;Right=chr1:58517414-58517786+;Distance=913;DiscordantMatePairAlignments=126;LeftRepeat=THE1D:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67857551 (chr1:58516497-58517410);Frequency=1.00
chr1	CG	SV	58516501	58516989	126	+	.	ID=4424;Type=deletion;Left=chr1:58516501-58516989;Right=chr1:58517414-58517786
chr1	CG	SV	58517414	58517786	126	+	.	ID=4424;Type=deletion;Left=chr1:58516501-58516989;Right=chr1:58517414-58517786
chr1	CG	SV	62163190	62164098	12	.	.	ID=4415;Type=deletion;Left=chr1:62163190-62163492+;Right=chr1:62163539-62164098+;Distance=349;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_176877:+;RightGenes=NM_176877:+;XRef=rs6143236 (chr1:62163174-62163523);Frequency=1.00
chr1	CG	SV	62163190	62163492	12	+	.	ID=4415;Type=deletion;Left=chr1:62163190-62163492;Right=chr1:62163539-62164098
chr1	CG	SV	62163539	62164098	12	+	.	ID=4415;Type=deletion;Left=chr1:62163190-62163492;Right=chr1:62163539-62164098
chr1	CG	SV	63477951	63481206	128	.	.	ID=4413;Type=deletion;Left=chr1:63477951-63478492+;Right=chr1:63480741-63481206+;Distance=2790;DiscordantMatePairAlignments=128;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68164570 (chr1:63477954-63480744);Frequency=0.65
chr1	CG	SV	63477951	63478492	128	+	.	ID=4413;Type=deletion;Left=chr1:63477951-63478492;Right=chr1:63480741-63481206
chr1	CG	SV	63480741	63481206	128	+	.	ID=4413;Type=deletion;Left=chr1:63477951-63478492;Right=chr1:63480741-63481206
chr1	CG	SV	67780611	67781758	75	.	.	ID=4412;Type=deletion;Left=chr1:67780611-67780931+;Right=chr1:67781468-67781758+;Distance=857;DiscordantMatePairAlignments=75;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	67780611	67780931	75	+	.	ID=4412;Type=deletion;Left=chr1:67780611-67780931;Right=chr1:67781468-67781758
chr1	CG	SV	67781468	67781758	75	+	.	ID=4412;Type=deletion;Left=chr1:67780611-67780931;Right=chr1:67781468-67781758
chr1	CG	SV	72528284	72537076	48	.	.	ID=4410;Type=deletion;Left=chr1:72528284-72528887+;Right=chr1:72536666-72537076+;Distance=8382;DiscordantMatePairAlignments=48;LeftRepeat=MLT2D:LTR:ERVL;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	72528284	72528887	48	+	.	ID=4410;Type=deletion;Left=chr1:72528284-72528887;Right=chr1:72536666-72537076
chr1	CG	SV	72536666	72537076	48	+	.	ID=4410;Type=deletion;Left=chr1:72528284-72528887;Right=chr1:72536666-72537076
chr1	CG	SV	72538912	72584992	121	.	.	ID=4409;Type=deletion;Left=chr1:72538912-72539416+;Right=chr1:72584428-72584992+;Distance=45516;DiscordantMatePairAlignments=121;LeftRepeat=;RightRepeat=MLT1E3:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	72538912	72539416	121	+	.	ID=4409;Type=deletion;Left=chr1:72538912-72539416;Right=chr1:72584428-72584992
chr1	CG	SV	72584428	72584992	121	+	.	ID=4409;Type=deletion;Left=chr1:72538912-72539416;Right=chr1:72584428-72584992
chr1	CG	SV	77248632	77249313	28	.	.	ID=1872;Type=tandem-duplication;Left=chr1:77248632-77248983-;Right=chr1:77248964-77249313-;Distance=330;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=;LeftGenes=NM_030965:+;RightGenes=NM_030965:+;XRef=;Frequency=0.18
chr1	CG	SV	77248632	77248983	28	-	.	ID=1872;Type=tandem-duplication;Left=chr1:77248632-77248983;Right=chr1:77248964-77249313
chr1	CG	SV	77248964	77249313	28	-	.	ID=1872;Type=tandem-duplication;Left=chr1:77248632-77248983;Right=chr1:77248964-77249313
chr1	CG	SV	81177350	81183900	29	.	.	ID=4404;Type=deletion;Left=chr1:81177350-81177776+;Right=chr1:81183541-81183900+;Distance=6191;DiscordantMatePairAlignments=29;LeftRepeat=MSTD:LTR:MaLR;RightRepeat=MSTD:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	81177350	81177776	29	+	.	ID=4404;Type=deletion;Left=chr1:81177350-81177776;Right=chr1:81183541-81183900
chr1	CG	SV	81183541	81183900	29	+	.	ID=4404;Type=deletion;Left=chr1:81177350-81177776;Right=chr1:81183541-81183900
chr1	CG	SV	81432939	81434143	43	.	.	ID=4702;Type=probable-inversion;Left=chr1:81432939-81433376+;Right=chr1:81433957-81434143-;Distance=1204;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=L1MD3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr1	CG	SV	81432939	81433376	43	+	.	ID=4702;Type=probable-inversion;Left=chr1:81432939-81433376;Right=chr1:81433957-81434143
chr1	CG	SV	81433957	81434143	43	+	.	ID=4702;Type=probable-inversion;Left=chr1:81432939-81433376;Right=chr1:81433957-81434143
chr1	CG	SV	82898558	82900676	82	.	.	ID=4403;Type=deletion;Left=chr1:82898558-82898975+;Right=chr1:82900169-82900676+;Distance=1611;DiscordantMatePairAlignments=82;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70959281 (chr1:82898546-82900157);Frequency=1.00
chr1	CG	SV	82898558	82898975	82	+	.	ID=4403;Type=deletion;Left=chr1:82898558-82898975;Right=chr1:82900169-82900676
chr1	CG	SV	82900169	82900676	82	+	.	ID=4403;Type=deletion;Left=chr1:82898558-82898975;Right=chr1:82900169-82900676
chr1	CG	SV	84290526	84297561	39	.	.	ID=4402;Type=deletion;Left=chr1:84290526-84290980+;Right=chr1:84297230-84297561+;Distance=6704;DiscordantMatePairAlignments=39;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66528373 (chr1:84290513-84297217);Frequency=1.00
chr1	CG	SV	84290526	84290980	39	+	.	ID=4402;Type=deletion;Left=chr1:84290526-84290980;Right=chr1:84297230-84297561
chr1	CG	SV	84297230	84297561	39	+	.	ID=4402;Type=deletion;Left=chr1:84290526-84290980;Right=chr1:84297230-84297561
chr1	CG	SV	85521222	85522050	20	.	.	ID=4401;Type=deletion;Left=chr1:85521222-85521830+;Right=chr1:85521552-85522050+;Distance=330;DiscordantMatePairAlignments=20;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67084614 (chr1:85521208-85521538);Frequency=0.94
chr1	CG	SV	85521222	85521830	20	+	.	ID=4401;Type=deletion;Left=chr1:85521222-85521830;Right=chr1:85521552-85522050
chr1	CG	SV	85521552	85522050	20	+	.	ID=4401;Type=deletion;Left=chr1:85521222-85521830;Right=chr1:85521552-85522050
chr1	CG	SV	86173439	86177589	56	.	.	ID=4400;Type=deletion;Left=chr1:86173439-86173910+;Right=chr1:86177126-86177589+;Distance=3687;DiscordantMatePairAlignments=56;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=LTR16A:LTR:ERVL;Self chain;LeftGenes=NM_152890:-;RightGenes=NM_152890:-;XRef=;Frequency=0.12
chr1	CG	SV	86173439	86173910	56	+	.	ID=4400;Type=deletion;Left=chr1:86173439-86173910;Right=chr1:86177126-86177589
chr1	CG	SV	86177126	86177589	56	+	.	ID=4400;Type=deletion;Left=chr1:86173439-86173910;Right=chr1:86177126-86177589
chr1	CG	SV	89371762	89425183	15	.	.	ID=4397;Type=deletion;Left=chr1:89371762-89371954+;Right=chr1:89424837-89425183+;Distance=53075;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_207398:-;RightGenes=NM_052941:-;XRef=;Frequency=0.35
chr1	CG	SV	89371762	89371954	15	+	.	ID=4397;Type=deletion;Left=chr1:89371762-89371954;Right=chr1:89424837-89425183
chr1	CG	SV	89424837	89425183	15	+	.	ID=4397;Type=deletion;Left=chr1:89371762-89371954;Right=chr1:89424837-89425183
chr1	CG	SV	93034664	93035433	19	.	.	ID=1180;Type=probable-inversion;Left=chr1:93034664-93034805-;Right=chr1:93035056-93035433+;Distance=251;DiscordantMatePairAlignments=19;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	93034664	93034805	19	-	.	ID=1180;Type=probable-inversion;Left=chr1:93034664-93034805;Right=chr1:93035056-93035433
chr1	CG	SV	93035056	93035433	19	-	.	ID=1180;Type=probable-inversion;Left=chr1:93034664-93034805;Right=chr1:93035056-93035433
chr1	CG	SV	94060963	94064447	140	.	.	ID=4394;Type=deletion;Left=chr1:94060963-94061318+;Right=chr1:94063847-94064447+;Distance=2884;DiscordantMatePairAlignments=140;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68045023 (chr1:94060963-94063847);Frequency=0.82
chr1	CG	SV	94060963	94061318	140	+	.	ID=4394;Type=deletion;Left=chr1:94060963-94061318;Right=chr1:94063847-94064447
chr1	CG	SV	94063847	94064447	140	+	.	ID=4394;Type=deletion;Left=chr1:94060963-94061318;Right=chr1:94063847-94064447
chr1	CG	SV	104244722	104245717	14	.	.	ID=3958;Type=deletion;Left=chr1:104244722-104245084+;Right=chr1:104245248-104245717+;Distance=526;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66586618 (chr1:104244722-104245248);Frequency=0.76
chr1	CG	SV	104244722	104245084	14	+	.	ID=3958;Type=deletion;Left=chr1:104244722-104245084;Right=chr1:104245248-104245717
chr1	CG	SV	104245248	104245717	14	+	.	ID=3958;Type=deletion;Left=chr1:104244722-104245084;Right=chr1:104245248-104245717
chr1	CG	SV	112493315	112506654	51	.	.	ID=3954;Type=deletion;Left=chr1:112493315-112493818+;Right=chr1:112506228-112506654+;Distance=12913;DiscordantMatePairAlignments=51;LeftRepeat=MLT1B-int:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	112493315	112493818	51	+	.	ID=3954;Type=deletion;Left=chr1:112493315-112493818;Right=chr1:112506228-112506654
chr1	CG	SV	112506228	112506654	51	+	.	ID=3954;Type=deletion;Left=chr1:112493315-112493818;Right=chr1:112506228-112506654
chr1	CG	SV	114447400	114456488	23	.	.	ID=1177;Type=distal-duplication;Left=chr1:114447400-114447477-;Right=chr1:114455894-114456488+;Distance=8417;DiscordantMatePairAlignments=23;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_205848:-;RightGenes=NM_205848:-;XRef=;Frequency=0.76
chr1	CG	SV	114447400	114447477	23	-	.	ID=1177;Type=distal-duplication;Left=chr1:114447400-114447477;Right=chr1:114455894-114456488
chr1	CG	SV	114455894	114456488	23	-	.	ID=1177;Type=distal-duplication;Left=chr1:114447400-114447477;Right=chr1:114455894-114456488
chr1	CG	SV	114447553	114455872	15	.	.	ID=4700;Type=distal-duplication;Left=chr1:114447553-114447628+;Right=chr1:114455434-114455872-;Distance=8319;DiscordantMatePairAlignments=15;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_205848:-;RightGenes=NM_205848:-;XRef=;Frequency=0.76
chr1	CG	SV	114447553	114447628	15	+	.	ID=4700;Type=distal-duplication;Left=chr1:114447553-114447628;Right=chr1:114455434-114455872
chr1	CG	SV	114455434	114455872	15	+	.	ID=4700;Type=distal-duplication;Left=chr1:114447553-114447628;Right=chr1:114455434-114455872
chr1	CG	SV	143605644	143606899	15	.	.	ID=3948;Type=deletion;Left=chr1:143605644-143606088+;Right=chr1:143606642-143606899+;Distance=998;DiscordantMatePairAlignments=15;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;RightGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;XRef=rs68115952 (chr1:143605449-143606445);Frequency=1.00
chr1	CG	SV	143605644	143606088	15	+	.	ID=3948;Type=deletion;Left=chr1:143605644-143606088;Right=chr1:143606642-143606899
chr1	CG	SV	143606642	143606899	15	+	.	ID=3948;Type=deletion;Left=chr1:143605644-143606088;Right=chr1:143606642-143606899
chr1	CG	SV	143607654	143618490	16	.	.	ID=3946;Type=deletion;Left=chr1:143607654-143607917+;Right=chr1:143618166-143618490+;Distance=10512;DiscordantMatePairAlignments=16;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;RightGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;XRef=;Frequency=1.00
chr1	CG	SV	143607654	143607917	16	+	.	ID=3946;Type=deletion;Left=chr1:143607654-143607917;Right=chr1:143618166-143618490
chr1	CG	SV	143618166	143618490	16	+	.	ID=3946;Type=deletion;Left=chr1:143607654-143607917;Right=chr1:143618166-143618490
chr1	CG	SV	143804305	143808953	455	.	.	ID=3943;Type=deletion;Left=chr1:143804305-143804884+;Right=chr1:143808440-143808953+;Distance=4135;DiscordantMatePairAlignments=455;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_004892:+;XRef=rs67330508 (chr1:143804305-143808439);Frequency=1.00
chr1	CG	SV	143804305	143804884	455	+	.	ID=3943;Type=deletion;Left=chr1:143804305-143804884;Right=chr1:143808440-143808953
chr1	CG	SV	143808440	143808953	455	+	.	ID=3943;Type=deletion;Left=chr1:143804305-143804884;Right=chr1:143808440-143808953
chr1	CG	SV	154110893	154112164	34	.	.	ID=3941;Type=deletion;Left=chr1:154110893-154111371+;Right=chr1:154111641-154112164+;Distance=748;DiscordantMatePairAlignments=34;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_152280:+;RightGenes=NM_152280:+;XRef=rs72087925 (chr1:154110887-154111635);Frequency=0.35
chr1	CG	SV	154110893	154111371	34	+	.	ID=3941;Type=deletion;Left=chr1:154110893-154111371;Right=chr1:154111641-154112164
chr1	CG	SV	154111641	154112164	34	+	.	ID=3941;Type=deletion;Left=chr1:154110893-154111371;Right=chr1:154111641-154112164
chr1	CG	SV	154793338	154795955	254	.	.	ID=3939;Type=complex;Left=chr1:154793338-154793913+;Right=chr1:154795569-154795955+;Distance=2231;DiscordantMatePairAlignments=254;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_178229:-;RightGenes=NM_178229:-;XRef=rs68110015 (chr1:154793347-154795578);Frequency=1.00
chr1	CG	SV	154793338	154793913	254	+	.	ID=3939;Type=complex;Left=chr1:154793338-154793913;Right=chr1:154795569-154795955
chr1	CG	SV	154795569	154795955	254	+	.	ID=3939;Type=complex;Left=chr1:154793338-154793913;Right=chr1:154795569-154795955
chr1	CG	SV	154793347	154796166	107	.	.	ID=3940;Type=complex;Left=chr1:154793347-154793782+;Right=chr1:154795578-154796166+;Distance=2231;DiscordantMatePairAlignments=107;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=NM_178229:-;RightGenes=NM_178229:-;XRef=rs68110015 (chr1:154793347-154795578);Frequency=1.00
chr1	CG	SV	154793347	154793782	107	+	.	ID=3940;Type=complex;Left=chr1:154793347-154793782;Right=chr1:154795578-154796166
chr1	CG	SV	154795578	154796166	107	+	.	ID=3940;Type=complex;Left=chr1:154793347-154793782;Right=chr1:154795578-154796166
chr1	CG	SV	156153982	156154360	10	.	.	ID=4667;Type=probable-inversion;Left=chr1:156153982-156154435+;Right=chr1:156154141-156154360-;Distance=378;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr1	CG	SV	156153982	156154435	10	+	.	ID=4667;Type=probable-inversion;Left=chr1:156153982-156154435;Right=chr1:156154141-156154360
chr1	CG	SV	156154141	156154360	10	+	.	ID=4667;Type=probable-inversion;Left=chr1:156153982-156154435;Right=chr1:156154141-156154360
chr1	CG	SV	157134157	157137034	22	.	.	ID=3937;Type=deletion;Left=chr1:157134157-157134596+;Right=chr1:157136608-157137034+;Distance=2451;DiscordantMatePairAlignments=22;LeftRepeat=L1MA9:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66519609 (chr1:157134154-157136605);Frequency=1.00
chr1	CG	SV	157134157	157134596	22	+	.	ID=3937;Type=deletion;Left=chr1:157134157-157134596;Right=chr1:157136608-157137034
chr1	CG	SV	157136608	157137034	22	+	.	ID=3937;Type=deletion;Left=chr1:157134157-157134596;Right=chr1:157136608-157137034
chr1	CG	SV	157915332	157916738	67	.	.	ID=3925;Type=deletion;Left=chr1:157915332-157915768+;Right=chr1:157916282-157916738+;Distance=950;DiscordantMatePairAlignments=67;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67706473 (chr1:157915331-157916281);Frequency=0.88
chr1	CG	SV	157915332	157915768	67	+	.	ID=3925;Type=deletion;Left=chr1:157915332-157915768;Right=chr1:157916282-157916738
chr1	CG	SV	157916282	157916738	67	+	.	ID=3925;Type=deletion;Left=chr1:157915332-157915768;Right=chr1:157916282-157916738
chr1	CG	SV	170689001	170689478	59	+	.	ID=3806;Type=complex;Left=chr1:170689001-170689478+;Right=chr5:76361090-76361516+;Distance=;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=LOR1a:LTR:ERV1;LeftGenes=NM_139240:+;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	76361090	76361516	59	+	.	ID=3806;Type=complex;Left=chr1:170689001-170689478+;Right=chr5:76361090-76361516+;Distance=;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=LOR1a:LTR:ERV1;LeftGenes=NM_139240:+;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	170688614	170689014	48	-	.	ID=1838;Type=complex;Left=chr1:170688614-170689014-;Right=chr5:76360573-76361075-;Distance=;DiscordantMatePairAlignments=48;LeftRepeat=;RightRepeat=LOR1a:LTR:ERV1;LeftGenes=NM_139240:+;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	76360573	76361075	48	-	.	ID=1838;Type=complex;Left=chr1:170688614-170689014-;Right=chr5:76360573-76361075-;Distance=;DiscordantMatePairAlignments=48;LeftRepeat=;RightRepeat=LOR1a:LTR:ERV1;LeftGenes=NM_139240:+;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	177596378	177600831	14	.	.	ID=3923;Type=deletion;Left=chr1:177596378-177596844+;Right=chr1:177600386-177600831+;Distance=4008;DiscordantMatePairAlignments=14;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr1	CG	SV	177596378	177596844	14	+	.	ID=3923;Type=deletion;Left=chr1:177596378-177596844;Right=chr1:177600386-177600831
chr1	CG	SV	177600386	177600831	14	+	.	ID=3923;Type=deletion;Left=chr1:177596378-177596844;Right=chr1:177600386-177600831
chr1	CG	SV	178450465	178451009	10	.	.	ID=3921;Type=deletion;Left=chr1:178450465-178451045+;Right=chr1:178450784-178451009+;Distance=319;DiscordantMatePairAlignments=10;LeftRepeat=AluYh9:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	178450465	178451045	10	+	.	ID=3921;Type=deletion;Left=chr1:178450465-178451045;Right=chr1:178450784-178451009
chr1	CG	SV	178450784	178451009	10	+	.	ID=3921;Type=deletion;Left=chr1:178450465-178451045;Right=chr1:178450784-178451009
chr1	CG	SV	183081366	183087984	91	.	.	ID=3920;Type=deletion;Left=chr1:183081366-183081898+;Right=chr1:183087422-183087984+;Distance=6056;DiscordantMatePairAlignments=91;LeftRepeat=;RightRepeat=;LeftGenes=NM_052966:-;RightGenes=NM_052966:-;XRef=rs67214927 (chr1:183081351-183087407);Frequency=0.59
chr1	CG	SV	183081366	183081898	91	+	.	ID=3920;Type=deletion;Left=chr1:183081366-183081898;Right=chr1:183087422-183087984
chr1	CG	SV	183087422	183087984	91	+	.	ID=3920;Type=deletion;Left=chr1:183081366-183081898;Right=chr1:183087422-183087984
chr1	CG	SV	185731451	185733350	36	.	.	ID=4665;Type=complex;Left=chr1:185731451-185731916+;Right=chr1:185733095-185733350-;Distance=1899;DiscordantMatePairAlignments=36;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185731451	185731916	36	+	.	ID=4665;Type=complex;Left=chr1:185731451-185731916;Right=chr1:185733095-185733350
chr1	CG	SV	185733095	185733350	36	+	.	ID=4665;Type=complex;Left=chr1:185731451-185731916;Right=chr1:185733095-185733350
chr1	CG	SV	185732850	185733838	53	.	.	ID=1114;Type=complex;Left=chr1:185732850-185733098-;Right=chr1:185733355-185733838+;Distance=257;DiscordantMatePairAlignments=53;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185732850	185733098	53	-	.	ID=1114;Type=complex;Left=chr1:185732850-185733098;Right=chr1:185733355-185733838
chr1	CG	SV	185733355	185733838	53	-	.	ID=1114;Type=complex;Left=chr1:185732850-185733098;Right=chr1:185733355-185733838
chr1	CG	SV	185982729	185989550	35	.	.	ID=3917;Type=deletion;Left=chr1:185982729-185983232+;Right=chr1:185989157-185989550+;Distance=6428;DiscordantMatePairAlignments=35;LeftRepeat=LTR52-int:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	185982729	185983232	35	+	.	ID=3917;Type=deletion;Left=chr1:185982729-185983232;Right=chr1:185989157-185989550
chr1	CG	SV	185989157	185989550	35	+	.	ID=3917;Type=deletion;Left=chr1:185982729-185983232;Right=chr1:185989157-185989550
chr1	CG	SV	186806079	186807333	86	.	.	ID=3916;Type=deletion;Left=chr1:186806079-186806502+;Right=chr1:186806854-186807333+;Distance=775;DiscordantMatePairAlignments=86;LeftRepeat=L1MB7:LINE:L1;RightRepeat=L1MCa:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72255816 (chr1:186806077-186806852);Frequency=1.00
chr1	CG	SV	186806079	186806502	86	+	.	ID=3916;Type=deletion;Left=chr1:186806079-186806502;Right=chr1:186806854-186807333
chr1	CG	SV	186806854	186807333	86	+	.	ID=3916;Type=deletion;Left=chr1:186806079-186806502;Right=chr1:186806854-186807333
chr1	CG	SV	195767143	195770359	141	.	.	ID=3913;Type=deletion;Left=chr1:195767143-195767681+;Right=chr1:195769906-195770359+;Distance=2763;DiscordantMatePairAlignments=141;LeftRepeat=L1HS:LINE:L1;Tandem T;RightRepeat=;LeftGenes=NM_001142795:-;RightGenes=NM_001142795:-;XRef=rs68001128 (chr1:195767143-195769906);Frequency=1.00
chr1	CG	SV	195767143	195767681	141	+	.	ID=3913;Type=deletion;Left=chr1:195767143-195767681;Right=chr1:195769906-195770359
chr1	CG	SV	195769906	195770359	141	+	.	ID=3913;Type=deletion;Left=chr1:195767143-195767681;Right=chr1:195769906-195770359
chr1	CG	SV	197705366	197707426	50	.	.	ID=3910;Type=deletion;Left=chr1:197705366-197705910+;Right=chr1:197706873-197707426+;Distance=1507;DiscordantMatePairAlignments=50;LeftRepeat=L1HS:LINE:L1;RightRepeat=MLT1A1:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67023442 (chr1:197705349-197706856);Frequency=1.00
chr1	CG	SV	197705366	197705910	50	+	.	ID=3910;Type=deletion;Left=chr1:197705366-197705910;Right=chr1:197706873-197707426
chr1	CG	SV	197706873	197707426	50	+	.	ID=3910;Type=deletion;Left=chr1:197705366-197705910;Right=chr1:197706873-197707426
chr1	CG	SV	203445229	203445397	31	.	.	ID=4664;Type=probable-inversion;Left=chr1:203445229-203445912+;Right=chr1:203445270-203445397-;Distance=168;DiscordantMatePairAlignments=31;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_015375:-;NM_199462:-;RightGenes=NM_015375:-;NM_199462:-;XRef=;Frequency=0.88
chr1	CG	SV	203445229	203445912	31	+	.	ID=4664;Type=probable-inversion;Left=chr1:203445229-203445912;Right=chr1:203445270-203445397
chr1	CG	SV	203445270	203445397	31	+	.	ID=4664;Type=probable-inversion;Left=chr1:203445229-203445912;Right=chr1:203445270-203445397
chr1	CG	SV	205608643	205612650	104	.	.	ID=3907;Type=deletion;Left=chr1:205608643-205609086+;Right=chr1:205612244-205612650+;Distance=3601;DiscordantMatePairAlignments=104;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66713152 (chr1:205608586-205612187);Frequency=0.59
chr1	CG	SV	205608643	205609086	104	+	.	ID=3907;Type=deletion;Left=chr1:205608643-205609086;Right=chr1:205612244-205612650
chr1	CG	SV	205612244	205612650	104	+	.	ID=3907;Type=deletion;Left=chr1:205608643-205609086;Right=chr1:205612244-205612650
chr1	CG	SV	206201312	206201845	16	+	.	ID=3884;Type=interchromosomal;Left=chr1:206201312-206201845+;Right=chr2:65837776-65837931+;Distance=;DiscordantMatePairAlignments=16;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1E-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	65837776	65837931	16	+	.	ID=3884;Type=interchromosomal;Left=chr1:206201312-206201845+;Right=chr2:65837776-65837931+;Distance=;DiscordantMatePairAlignments=16;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1E-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	208144678	208153069	159	.	.	ID=3906;Type=deletion;Left=chr1:208144678-208145074+;Right=chr1:208152600-208153069+;Distance=7922;DiscordantMatePairAlignments=159;LeftRepeat=;RightRepeat=HERVL:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs72202560 (chr1:208144684-208152600);Frequency=0.53
chr1	CG	SV	208144678	208145074	159	+	.	ID=3906;Type=deletion;Left=chr1:208144678-208145074;Right=chr1:208152600-208153069
chr1	CG	SV	208152600	208153069	159	+	.	ID=3906;Type=deletion;Left=chr1:208144678-208145074;Right=chr1:208152600-208153069
chr1	CG	SV	208893763	208894145	12	.	.	ID=1841;Type=tandem-duplication;Left=chr1:208893763-208893894-;Right=chr1:208893929-208894145-;Distance=251;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem period 14;Tandem period 30;RightRepeat=Self chain;Tandem period 14;Tandem period 30;LeftGenes=NM_001122834:+;NM_018194:+;RightGenes=NM_001122834:+;NM_018194:+;XRef=;Frequency=1.00
chr1	CG	SV	208893763	208893894	12	-	.	ID=1841;Type=tandem-duplication;Left=chr1:208893763-208893894;Right=chr1:208893929-208894145
chr1	CG	SV	208893929	208894145	12	-	.	ID=1841;Type=tandem-duplication;Left=chr1:208893763-208893894;Right=chr1:208893929-208894145
chr1	CG	SV	210537764	210539770	102	.	.	ID=3904;Type=deletion;Left=chr1:210537764-210538175+;Right=chr1:210539245-210539770+;Distance=1481;DiscordantMatePairAlignments=102;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_006243:+;RightGenes=NM_006243:+;XRef=rs67390846 (chr1:210537758-210539239);Frequency=0.88
chr1	CG	SV	210537764	210538175	102	+	.	ID=3904;Type=deletion;Left=chr1:210537764-210538175;Right=chr1:210539245-210539770
chr1	CG	SV	210539245	210539770	102	+	.	ID=3904;Type=deletion;Left=chr1:210537764-210538175;Right=chr1:210539245-210539770
chr1	CG	SV	216249125	216255646	40	.	.	ID=3902;Type=deletion;Left=chr1:216249125-216249438+;Right=chr1:216255231-216255646+;Distance=6106;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	216249125	216249438	40	+	.	ID=3902;Type=deletion;Left=chr1:216249125-216249438;Right=chr1:216255231-216255646
chr1	CG	SV	216255231	216255646	40	+	.	ID=3902;Type=deletion;Left=chr1:216249125-216249438;Right=chr1:216255231-216255646
chr1	CG	SV	216312261	216313580	31	.	.	ID=3901;Type=deletion;Left=chr1:216312261-216312575+;Right=chr1:216313122-216313580+;Distance=861;DiscordantMatePairAlignments=31;LeftRepeat=L1HS:LINE:L1;RightRepeat=MER45B:DNA:Tip100;LeftGenes=;RightGenes=;XRef=rs70942859 (chr1:216312261-216313122);Frequency=0.94
chr1	CG	SV	216312261	216312575	31	+	.	ID=3901;Type=deletion;Left=chr1:216312261-216312575;Right=chr1:216313122-216313580
chr1	CG	SV	216313122	216313580	31	+	.	ID=3901;Type=deletion;Left=chr1:216312261-216312575;Right=chr1:216313122-216313580
chr1	CG	SV	220440788	220447469	44	.	.	ID=3897;Type=deletion;Left=chr1:220440788-220441237+;Right=chr1:220447162-220447469+;Distance=6374;DiscordantMatePairAlignments=44;LeftRepeat=AluSg:SINE:Alu;RightRepeat=L1PA17:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	220440788	220441237	44	+	.	ID=3897;Type=deletion;Left=chr1:220440788-220441237;Right=chr1:220447162-220447469
chr1	CG	SV	220447162	220447469	44	+	.	ID=3897;Type=deletion;Left=chr1:220440788-220441237;Right=chr1:220447162-220447469
chr1	CG	SV	221270466	221270911	86	-	.	ID=1108;Type=interchromosomal;Left=chr1:221270466-221270911-;Right=chr15:63333071-63333596+;Distance=;DiscordantMatePairAlignments=86;LeftRepeat=MER5B:DNA:MER1_type;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	63333071	63333596	86	-	.	ID=1108;Type=interchromosomal;Left=chr1:221270466-221270911-;Right=chr15:63333071-63333596+;Distance=;DiscordantMatePairAlignments=86;LeftRepeat=MER5B:DNA:MER1_type;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	222313740	222314711	229	.	.	ID=3895;Type=complex;Left=chr1:222313740-222314288+;Right=chr1:222314216-222314711+;Distance=476;DiscordantMatePairAlignments=229;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67408596 (chr1:222313740-222314216);Frequency=1.00
chr1	CG	SV	222313740	222314288	229	+	.	ID=3895;Type=complex;Left=chr1:222313740-222314288;Right=chr1:222314216-222314711
chr1	CG	SV	222314216	222314711	229	+	.	ID=3895;Type=complex;Left=chr1:222313740-222314288;Right=chr1:222314216-222314711
chr1	CG	SV	222313740	222314606	59	.	.	ID=3896;Type=complex;Left=chr1:222313740-222314330+;Right=chr1:222314216-222314606+;Distance=476;DiscordantMatePairAlignments=59;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67408596 (chr1:222313740-222314216);Frequency=1.00
chr1	CG	SV	222313740	222314330	59	+	.	ID=3896;Type=complex;Left=chr1:222313740-222314330;Right=chr1:222314216-222314606
chr1	CG	SV	222314216	222314606	59	+	.	ID=3896;Type=complex;Left=chr1:222313740-222314330;Right=chr1:222314216-222314606
chr1	CG	SV	222459457	222460457	42	.	.	ID=3893;Type=deletion;Left=chr1:222459457-222459884+;Right=chr1:222459770-222460457+;Distance=313;DiscordantMatePairAlignments=42;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10525121 (chr1:222459457-222459770);Frequency=1.00
chr1	CG	SV	222459457	222459884	42	+	.	ID=3893;Type=deletion;Left=chr1:222459457-222459884;Right=chr1:222459770-222460457
chr1	CG	SV	222459770	222460457	42	+	.	ID=3893;Type=deletion;Left=chr1:222459457-222459884;Right=chr1:222459770-222460457
chr1	CG	SV	224069440	224070433	39	.	.	ID=3891;Type=deletion;Left=chr1:224069440-224069962+;Right=chr1:224069767-224070433+;Distance=327;DiscordantMatePairAlignments=39;LeftRepeat=;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_001136018:+;RightGenes=NM_001136018:+;XRef=;Frequency=0.35
chr1	CG	SV	224069440	224069962	39	+	.	ID=3891;Type=deletion;Left=chr1:224069440-224069962;Right=chr1:224069767-224070433
chr1	CG	SV	224069767	224070433	39	+	.	ID=3891;Type=deletion;Left=chr1:224069440-224069962;Right=chr1:224069767-224070433
chr1	CG	SV	227440011	227440879	19	.	.	ID=3886;Type=deletion;Left=chr1:227440011-227440486+;Right=chr1:227440385-227440879+;Distance=374;DiscordantMatePairAlignments=19;LeftRepeat=L1ME4a:LINE:L1;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71748063 (chr1:227440011-227440385);Frequency=0.59
chr1	CG	SV	227440011	227440486	19	+	.	ID=3886;Type=deletion;Left=chr1:227440011-227440486;Right=chr1:227440385-227440879
chr1	CG	SV	227440385	227440879	19	+	.	ID=3886;Type=deletion;Left=chr1:227440011-227440486;Right=chr1:227440385-227440879
chr1	CG	SV	227879160	227887934	85	.	.	ID=3885;Type=deletion;Left=chr1:227879160-227879722+;Right=chr1:227887463-227887934+;Distance=8303;DiscordantMatePairAlignments=85;LeftRepeat=;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66826980 (chr1:227879160-227887463);Frequency=0.47
chr1	CG	SV	227879160	227879722	85	+	.	ID=3885;Type=deletion;Left=chr1:227879160-227879722;Right=chr1:227887463-227887934
chr1	CG	SV	227887463	227887934	85	+	.	ID=3885;Type=deletion;Left=chr1:227879160-227879722;Right=chr1:227887463-227887934
chr1	CG	SV	228199261	228200834	41	.	.	ID=3881;Type=deletion;Left=chr1:228199261-228199655+;Right=chr1:228200501-228200834+;Distance=1240;DiscordantMatePairAlignments=41;LeftRepeat=AluSc:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr1	CG	SV	228199261	228199655	41	+	.	ID=3881;Type=deletion;Left=chr1:228199261-228199655;Right=chr1:228200501-228200834
chr1	CG	SV	228200501	228200834	41	+	.	ID=3881;Type=deletion;Left=chr1:228199261-228199655;Right=chr1:228200501-228200834
chr1	CG	SV	234121214	234122128	20	.	.	ID=3877;Type=deletion;Left=chr1:234121214-234121639+;Right=chr1:234121552-234122128+;Distance=338;DiscordantMatePairAlignments=20;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68079622 (chr1:234121214-234121552);Frequency=0.88
chr1	CG	SV	234121214	234121639	20	+	.	ID=3877;Type=deletion;Left=chr1:234121214-234121639;Right=chr1:234121552-234122128
chr1	CG	SV	234121552	234122128	20	+	.	ID=3877;Type=deletion;Left=chr1:234121214-234121639;Right=chr1:234121552-234122128
chr1	CG	SV	234615726	234618514	69	.	.	ID=3876;Type=deletion;Left=chr1:234615726-234616101+;Right=chr1:234617969-234618514+;Distance=2243;DiscordantMatePairAlignments=69;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67414199 (chr1:234615726-234617969);Frequency=1.00
chr1	CG	SV	234615726	234616101	69	+	.	ID=3876;Type=deletion;Left=chr1:234615726-234616101;Right=chr1:234617969-234618514
chr1	CG	SV	234617969	234618514	69	+	.	ID=3876;Type=deletion;Left=chr1:234615726-234616101;Right=chr1:234617969-234618514
chr1	CG	SV	235632624	235633227	17	.	.	ID=1105;Type=probable-inversion;Left=chr1:235632624-235632726-;Right=chr1:235632830-235633227+;Distance=104;DiscordantMatePairAlignments=17;LeftRepeat=AluJb:SINE:Alu;AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_001035:+;RightGenes=NM_001035:+;XRef=;Frequency=1.00
chr1	CG	SV	235632624	235632726	17	-	.	ID=1105;Type=probable-inversion;Left=chr1:235632624-235632726;Right=chr1:235632830-235633227
chr1	CG	SV	235632830	235633227	17	-	.	ID=1105;Type=probable-inversion;Left=chr1:235632624-235632726;Right=chr1:235632830-235633227
chr1	CG	SV	238683630	238684198	11	.	.	ID=3874;Type=deletion;Left=chr1:238683630-238684210+;Right=chr1:238683954-238684198+;Distance=324;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_020066:+;RightGenes=NM_020066:+;XRef=;Frequency=0.88
chr1	CG	SV	238683630	238684210	11	+	.	ID=3874;Type=deletion;Left=chr1:238683630-238684210;Right=chr1:238683954-238684198
chr1	CG	SV	238683954	238684198	11	+	.	ID=3874;Type=deletion;Left=chr1:238683630-238684210;Right=chr1:238683954-238684198
chr1	CG	SV	238707870	238708783	12	.	.	ID=3873;Type=deletion;Left=chr1:238707870-238708427+;Right=chr1:238708272-238708783+;Distance=402;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs70947197 (chr1:238707835-238708237);Frequency=0.76
chr1	CG	SV	238707870	238708427	12	+	.	ID=3873;Type=deletion;Left=chr1:238707870-238708427;Right=chr1:238708272-238708783
chr1	CG	SV	238708272	238708783	12	+	.	ID=3873;Type=deletion;Left=chr1:238707870-238708427;Right=chr1:238708272-238708783
chr1	CG	SV	239702746	243353657	184	.	.	ID=4659;Type=probable-inversion;Left=chr1:239702746-239703072+;Right=chr1:243353136-243353657-;Distance=3650911;DiscordantMatePairAlignments=184;LeftRepeat=L1MC2:LINE:L1;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001143943:+;NR_026586:+;NR_026587:+;XRef=;Frequency=0.00
chr1	CG	SV	239702746	239703072	184	+	.	ID=4659;Type=probable-inversion;Left=chr1:239702746-239703072;Right=chr1:243353136-243353657
chr1	CG	SV	243353136	243353657	184	+	.	ID=4659;Type=probable-inversion;Left=chr1:239702746-239703072;Right=chr1:243353136-243353657
chr1	CG	SV	239843145	239845180	82	.	.	ID=1104;Type=probable-inversion;Left=chr1:239843145-239843487-;Right=chr1:239844780-239845180+;Distance=1293;DiscordantMatePairAlignments=82;LeftRepeat=;RightRepeat=Tandem period 45;LeftGenes=NM_014322:-;RightGenes=NM_014322:-;XRef=;Frequency=0.00
chr1	CG	SV	239843145	239843487	82	-	.	ID=1104;Type=probable-inversion;Left=chr1:239843145-239843487;Right=chr1:239844780-239845180
chr1	CG	SV	239844780	239845180	82	-	.	ID=1104;Type=probable-inversion;Left=chr1:239843145-239843487;Right=chr1:239844780-239845180
chr1	CG	SV	241194420	241196334	81	.	.	ID=3871;Type=deletion;Left=chr1:241194420-241194991+;Right=chr1:241195864-241196334+;Distance=1444;DiscordantMatePairAlignments=81;LeftRepeat=AluJo:SINE:Alu;SegDup;Self chain;RightRepeat=AluSp:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr1	CG	SV	241194420	241194991	81	+	.	ID=3871;Type=deletion;Left=chr1:241194420-241194991;Right=chr1:241195864-241196334
chr1	CG	SV	241195864	241196334	81	+	.	ID=3871;Type=deletion;Left=chr1:241194420-241194991;Right=chr1:241195864-241196334
chr1	CG	SV	241849368	241850856	216	.	.	ID=3870;Type=deletion;Left=chr1:241849368-241849884+;Right=chr1:241850378-241850856+;Distance=1010;DiscordantMatePairAlignments=216;LeftRepeat=L1MA4:LINE:L1;RightRepeat=;LeftGenes=NM_005465:-;NM_181690:-;RightGenes=NM_005465:-;NM_181690:-;XRef=rs72260277 (chr1:241849390-241850386);Frequency=0.94
chr1	CG	SV	241849368	241849884	216	+	.	ID=3870;Type=deletion;Left=chr1:241849368-241849884;Right=chr1:241850378-241850856
chr1	CG	SV	241850378	241850856	216	+	.	ID=3870;Type=deletion;Left=chr1:241849368-241849884;Right=chr1:241850378-241850856
chr2	CG	SV	1337076	1337967	36	.	.	ID=3867;Type=deletion;Left=chr2:1337076-1337700+;Right=chr2:1337523-1337967+;Distance=447;DiscordantMatePairAlignments=36;LeftRepeat=Self chain;Tandem period 106;RightRepeat=MIRb:SINE:MIR;Self chain;Tandem period 115;LeftGenes=NM_018968:+;RightGenes=NM_018968:+;XRef=rs66735644 (chr2:1337076-1337519);Frequency=0.94
chr2	CG	SV	1337076	1337700	36	+	.	ID=3867;Type=deletion;Left=chr2:1337076-1337700;Right=chr2:1337523-1337967
chr2	CG	SV	1337523	1337967	36	+	.	ID=3867;Type=deletion;Left=chr2:1337076-1337700;Right=chr2:1337523-1337967
chr2	CG	SV	1602104	1602941	10	.	.	ID=3865;Type=deletion;Left=chr2:1602104-1602590+;Right=chr2:1602491-1602941+;Distance=387;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 43;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr2	CG	SV	1602104	1602590	10	+	.	ID=3865;Type=deletion;Left=chr2:1602104-1602590;Right=chr2:1602491-1602941
chr2	CG	SV	1602491	1602941	10	+	.	ID=3865;Type=deletion;Left=chr2:1602104-1602590;Right=chr2:1602491-1602941
chr2	CG	SV	1780753	1781488	17	.	.	ID=3864;Type=deletion;Left=chr2:1780753-1781142+;Right=chr2:1781074-1781488+;Distance=321;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem period 29;Tandem period 59;Tandem period 88;RightRepeat=Self chain;LeftGenes=NM_015025:-;RightGenes=NM_015025:-;XRef=rs71915727 (chr2:1780621-1780945);Frequency=0.71
chr2	CG	SV	1780753	1781142	17	+	.	ID=3864;Type=deletion;Left=chr2:1780753-1781142;Right=chr2:1781074-1781488
chr2	CG	SV	1781074	1781488	17	+	.	ID=3864;Type=deletion;Left=chr2:1780753-1781142;Right=chr2:1781074-1781488
chr2	CG	SV	2777811	2778829	89	.	.	ID=3862;Type=deletion;Left=chr2:2777811-2778365+;Right=chr2:2778260-2778829+;Distance=449;DiscordantMatePairAlignments=89;LeftRepeat=Self chain;Tandem period 32;Tandem period 63;RightRepeat=Self chain;Tandem period 29;LeftGenes=;RightGenes=;XRef=rs67035310 (chr2:2777781-2778251);Frequency=0.76
chr2	CG	SV	2777811	2778365	89	+	.	ID=3862;Type=deletion;Left=chr2:2777811-2778365;Right=chr2:2778260-2778829
chr2	CG	SV	2778260	2778829	89	+	.	ID=3862;Type=deletion;Left=chr2:2777811-2778365;Right=chr2:2778260-2778829
chr2	CG	SV	4759185	4765661	45	.	.	ID=3860;Type=deletion;Left=chr2:4759185-4759502+;Right=chr2:4765250-4765661+;Distance=6065;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=L1M:LINE:L1;LeftGenes=;RightGenes=;XRef=rs74164256 (chr2:4759185-4765250);Frequency=1.00
chr2	CG	SV	4759185	4759502	45	+	.	ID=3860;Type=deletion;Left=chr2:4759185-4759502;Right=chr2:4765250-4765661
chr2	CG	SV	4765250	4765661	45	+	.	ID=3860;Type=deletion;Left=chr2:4759185-4759502;Right=chr2:4765250-4765661
chr2	CG	SV	9876688	9877643	19	.	.	ID=3858;Type=deletion;Left=chr2:9876688-9877084+;Right=chr2:9877038-9877643+;Distance=350;DiscordantMatePairAlignments=19;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=FRAM:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr2	CG	SV	9876688	9877084	19	+	.	ID=3858;Type=deletion;Left=chr2:9876688-9877084;Right=chr2:9877038-9877643
chr2	CG	SV	9877038	9877643	19	+	.	ID=3858;Type=deletion;Left=chr2:9876688-9877084;Right=chr2:9877038-9877643
chr2	CG	SV	10743489	10744646	52	.	.	ID=4658;Type=distal-duplication;Left=chr2:10743489-10743970+;Right=chr2:10744471-10744646-;Distance=1157;DiscordantMatePairAlignments=52;LeftRepeat=AluJb:SINE:Alu;RightRepeat=L3:LINE:CR1;LeftGenes=NM_024894:-;RightGenes=NM_024894:-;XRef=;Frequency=0.35
chr2	CG	SV	10743489	10743970	52	+	.	ID=4658;Type=distal-duplication;Left=chr2:10743489-10743970;Right=chr2:10744471-10744646
chr2	CG	SV	10744471	10744646	52	+	.	ID=4658;Type=distal-duplication;Left=chr2:10743489-10743970;Right=chr2:10744471-10744646
chr2	CG	SV	10742956	10744645	76	.	.	ID=1103;Type=distal-duplication;Left=chr2:10742956-10743497-;Right=chr2:10744476-10744645+;Distance=979;DiscordantMatePairAlignments=76;LeftRepeat=AluJb:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=NM_024894:-;RightGenes=NM_024894:-;XRef=;Frequency=0.35
chr2	CG	SV	10742956	10743497	76	-	.	ID=1103;Type=distal-duplication;Left=chr2:10742956-10743497;Right=chr2:10744476-10744645
chr2	CG	SV	10744476	10744645	76	-	.	ID=1103;Type=distal-duplication;Left=chr2:10742956-10743497;Right=chr2:10744476-10744645
chr2	CG	SV	20530159	20531025	14	.	.	ID=3854;Type=deletion;Left=chr2:20530159-20530648+;Right=chr2:20530466-20531025+;Distance=307;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67436233 (chr2:20530159-20530466);Frequency=0.47
chr2	CG	SV	20530159	20530648	14	+	.	ID=3854;Type=deletion;Left=chr2:20530159-20530648;Right=chr2:20530466-20531025
chr2	CG	SV	20530466	20531025	14	+	.	ID=3854;Type=deletion;Left=chr2:20530159-20530648;Right=chr2:20530466-20531025
chr2	CG	SV	33077966	33081237	90	.	.	ID=3851;Type=deletion;Left=chr2:33077966-33078457+;Right=chr2:33080796-33081237+;Distance=2830;DiscordantMatePairAlignments=90;LeftRepeat=MER5B:DNA:MER1_type;RightRepeat=;LeftGenes=NM_206943:+;RightGenes=NM_206943:+;XRef=rs72458672 (chr2:33077966-33080796);Frequency=0.59
chr2	CG	SV	33077966	33078457	90	+	.	ID=3851;Type=deletion;Left=chr2:33077966-33078457;Right=chr2:33080796-33081237
chr2	CG	SV	33080796	33081237	90	+	.	ID=3851;Type=deletion;Left=chr2:33077966-33078457;Right=chr2:33080796-33081237
chr2	CG	SV	41629470	41635168	36	.	.	ID=3846;Type=deletion;Left=chr2:41629470-41629899+;Right=chr2:41634787-41635168+;Distance=5317;DiscordantMatePairAlignments=36;LeftRepeat=;RightRepeat=L1P5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66488562 (chr2:41629470-41634786);Frequency=0.47
chr2	CG	SV	41629470	41629899	36	+	.	ID=3846;Type=deletion;Left=chr2:41629470-41629899;Right=chr2:41634787-41635168
chr2	CG	SV	41634787	41635168	36	+	.	ID=3846;Type=deletion;Left=chr2:41629470-41629899;Right=chr2:41634787-41635168
chr2	CG	SV	41826660	41829808	22	.	.	ID=3845;Type=deletion;Left=chr2:41826660-41827052+;Right=chr2:41829384-41829808+;Distance=2724;DiscordantMatePairAlignments=22;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72393283 (chr2:41826645-41829369);Frequency=1.00
chr2	CG	SV	41826660	41827052	22	+	.	ID=3845;Type=deletion;Left=chr2:41826660-41827052;Right=chr2:41829384-41829808
chr2	CG	SV	41829384	41829808	22	+	.	ID=3845;Type=deletion;Left=chr2:41826660-41827052;Right=chr2:41829384-41829808
chr2	CG	SV	42199763	42201187	45	.	.	ID=3844;Type=deletion;Left=chr2:42199763-42200164+;Right=chr2:42200822-42201187+;Distance=1059;DiscordantMatePairAlignments=45;LeftRepeat=L1ME1:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr2	CG	SV	42199763	42200164	45	+	.	ID=3844;Type=deletion;Left=chr2:42199763-42200164;Right=chr2:42200822-42201187
chr2	CG	SV	42200822	42201187	45	+	.	ID=3844;Type=deletion;Left=chr2:42199763-42200164;Right=chr2:42200822-42201187
chr2	CG	SV	46763654	46764480	11	.	.	ID=3841;Type=deletion;Left=chr2:46763654-46764265+;Right=chr2:46763970-46764480+;Distance=316;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71757447 (chr2:46763636-46763952);Frequency=1.00
chr2	CG	SV	46763654	46764265	11	+	.	ID=3841;Type=deletion;Left=chr2:46763654-46764265;Right=chr2:46763970-46764480
chr2	CG	SV	46763970	46764480	11	+	.	ID=3841;Type=deletion;Left=chr2:46763654-46764265;Right=chr2:46763970-46764480
chr2	CG	SV	51078052	51079427	28	.	.	ID=3839;Type=deletion;Left=chr2:51078052-51078638+;Right=chr2:51079047-51079427+;Distance=995;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_001135659:-;NM_004801:-;RightGenes=NM_001135659:-;NM_004801:-;XRef=rs67948039 (chr2:51078051-51079046);Frequency=0.06
chr2	CG	SV	51078052	51078638	28	+	.	ID=3839;Type=deletion;Left=chr2:51078052-51078638;Right=chr2:51079047-51079427
chr2	CG	SV	51079047	51079427	28	+	.	ID=3839;Type=deletion;Left=chr2:51078052-51078638;Right=chr2:51079047-51079427
chr2	CG	SV	54418997	54421364	13	.	.	ID=3834;Type=deletion;Left=chr2:54418997-54419614+;Right=chr2:54420977-54421364+;Distance=1980;DiscordantMatePairAlignments=13;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_001100396:+;RightGenes=NM_001100396:+;XRef=rs66784896 (chr2:54419000-54420977);Frequency=0.94
chr2	CG	SV	54418997	54419614	13	+	.	ID=3834;Type=deletion;Left=chr2:54418997-54419614;Right=chr2:54420977-54421364
chr2	CG	SV	54420977	54421364	13	+	.	ID=3834;Type=deletion;Left=chr2:54418997-54419614;Right=chr2:54420977-54421364
chr2	CG	SV	61553904	61556962	55	.	.	ID=1101;Type=probable-inversion;Left=chr2:61553904-61554269-;Right=chr2:61556436-61556962+;Distance=2167;DiscordantMatePairAlignments=55;LeftRepeat=AluJo:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr2	CG	SV	61553904	61554269	55	-	.	ID=1101;Type=probable-inversion;Left=chr2:61553904-61554269;Right=chr2:61556436-61556962
chr2	CG	SV	61556436	61556962	55	-	.	ID=1101;Type=probable-inversion;Left=chr2:61553904-61554269;Right=chr2:61556436-61556962
chr2	CG	SV	66359098	66361545	102	.	.	ID=3829;Type=deletion;Left=chr2:66359098-66359631+;Right=chr2:66361062-66361545+;Distance=1964;DiscordantMatePairAlignments=102;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs67498305 (chr2:66359098-66361062);Frequency=0.41
chr2	CG	SV	66359098	66359631	102	+	.	ID=3829;Type=deletion;Left=chr2:66359098-66359631;Right=chr2:66361062-66361545
chr2	CG	SV	66361062	66361545	102	+	.	ID=3829;Type=deletion;Left=chr2:66359098-66359631;Right=chr2:66361062-66361545
chr2	CG	SV	69978556	69979609	61	.	.	ID=3828;Type=deletion;Left=chr2:69978556-69979023+;Right=chr2:69979077-69979609+;Distance=521;DiscordantMatePairAlignments=61;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;LeftGenes=NM_006857:+;RightGenes=NM_006857:+;XRef=rs67525018 (chr2:69978548-69979069);Frequency=0.76
chr2	CG	SV	69978556	69979023	61	+	.	ID=3828;Type=deletion;Left=chr2:69978556-69979023;Right=chr2:69979077-69979609
chr2	CG	SV	69979077	69979609	61	+	.	ID=3828;Type=deletion;Left=chr2:69978556-69979023;Right=chr2:69979077-69979609
chr2	CG	SV	73284489	73285151	12	.	.	ID=3827;Type=deletion;Left=chr2:73284489-73285124+;Right=chr2:73284801-73285151+;Distance=312;DiscordantMatePairAlignments=12;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001134462:+;RightGenes=NM_001134462:+;XRef=rs66517858 (chr2:73284454-73284766);Frequency=0.53
chr2	CG	SV	73284489	73285124	12	+	.	ID=3827;Type=deletion;Left=chr2:73284489-73285124;Right=chr2:73284801-73285151
chr2	CG	SV	73284801	73285151	12	+	.	ID=3827;Type=deletion;Left=chr2:73284489-73285124;Right=chr2:73284801-73285151
chr2	CG	SV	76380017	76383004	30	.	.	ID=3825;Type=deletion;Left=chr2:76380017-76380325+;Right=chr2:76382412-76383004+;Distance=2395;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68153335 (chr2:76380020-76382415);Frequency=1.00
chr2	CG	SV	76380017	76380325	30	+	.	ID=3825;Type=deletion;Left=chr2:76380017-76380325;Right=chr2:76382412-76383004
chr2	CG	SV	76382412	76383004	30	+	.	ID=3825;Type=deletion;Left=chr2:76380017-76380325;Right=chr2:76382412-76383004
chr2	CG	SV	77971399	77972236	25	.	.	ID=3824;Type=deletion;Left=chr2:77971399-77971884+;Right=chr2:77971866-77972236+;Distance=467;DiscordantMatePairAlignments=25;LeftRepeat=;RightRepeat=L1MA7:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72224379 (chr2:77971399-77971865);Frequency=0.47
chr2	CG	SV	77971399	77971884	25	+	.	ID=3824;Type=deletion;Left=chr2:77971399-77971884;Right=chr2:77971866-77972236
chr2	CG	SV	77971866	77972236	25	+	.	ID=3824;Type=deletion;Left=chr2:77971399-77971884;Right=chr2:77971866-77972236
chr2	CG	SV	88810354	88814119	175	.	.	ID=3821;Type=deletion;Left=chr2:88810354-88810995+;Right=chr2:88813408-88814119+;Distance=3054;DiscordantMatePairAlignments=175;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_144563:+;RightGenes=NM_144563:+;XRef=rs72121102 (chr2:88810343-88813397);Frequency=1.00
chr2	CG	SV	88810354	88810995	175	+	.	ID=3821;Type=deletion;Left=chr2:88810354-88810995;Right=chr2:88813408-88814119
chr2	CG	SV	88813408	88814119	175	+	.	ID=3821;Type=deletion;Left=chr2:88810354-88810995;Right=chr2:88813408-88814119
chr2	CG	SV	91148230	91149212	10	.	.	ID=3819;Type=deletion;Left=chr2:91148230-91148601+;Right=chr2:91149008-91149212+;Distance=778;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=AluSq:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs6146841 (chr2:91148022-91148798);Frequency=0.94
chr2	CG	SV	91148230	91148601	10	+	.	ID=3819;Type=deletion;Left=chr2:91148230-91148601;Right=chr2:91149008-91149212
chr2	CG	SV	91149008	91149212	10	+	.	ID=3819;Type=deletion;Left=chr2:91148230-91148601;Right=chr2:91149008-91149212
chr2	CG	SV	94892322	94912187	74	.	.	ID=3814;Type=complex;Left=chr2:94892322-94892791+;Right=chr2:94911773-94912187+;Distance=19451;DiscordantMatePairAlignments=74;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr2	CG	SV	94892322	94892791	74	+	.	ID=3814;Type=complex;Left=chr2:94892322-94892791;Right=chr2:94911773-94912187
chr2	CG	SV	94911773	94912187	74	+	.	ID=3814;Type=complex;Left=chr2:94892322-94892791;Right=chr2:94911773-94912187
chr2	CG	SV	94912124	94913604	14	.	.	ID=3813;Type=complex;Left=chr2:94912124-94912468+;Right=chr2:94913230-94913604+;Distance=1106;DiscordantMatePairAlignments=14;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr2	CG	SV	94912124	94912468	14	+	.	ID=3813;Type=complex;Left=chr2:94912124-94912468;Right=chr2:94913230-94913604
chr2	CG	SV	94913230	94913604	14	+	.	ID=3813;Type=complex;Left=chr2:94912124-94912468;Right=chr2:94913230-94913604
chr2	CG	SV	108676986	108678688	24	.	.	ID=3716;Type=deletion;Left=chr2:108676986-108677448+;Right=chr2:108678542-108678688+;Distance=1556;DiscordantMatePairAlignments=24;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L1MB7:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71831316 (chr2:108676746-108678213);Frequency=0.41
chr2	CG	SV	108676986	108677448	24	+	.	ID=3716;Type=deletion;Left=chr2:108676986-108677448;Right=chr2:108678542-108678688
chr2	CG	SV	108678542	108678688	24	+	.	ID=3716;Type=deletion;Left=chr2:108676986-108677448;Right=chr2:108678542-108678688
chr2	CG	SV	110210043	111169977	72	.	.	ID=3715;Type=deletion;Left=chr2:110210043-110210598+;Right=chr2:111169574-111169977+;Distance=959531;DiscordantMatePairAlignments=72;LeftRepeat=SegDup;Self chain;RightRepeat=LTR19B:LTR:ERV1;Self chain;LeftGenes=NM_005434:-;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	110210043	110210598	72	+	.	ID=3715;Type=deletion;Left=chr2:110210043-110210598;Right=chr2:111169574-111169977
chr2	CG	SV	111169574	111169977	72	+	.	ID=3715;Type=deletion;Left=chr2:110210043-110210598;Right=chr2:111169574-111169977
chr2	CG	SV	116690523	116698751	60	.	.	ID=1099;Type=complex;Left=chr2:116690523-116690809-;Right=chr2:116698356-116698751+;Distance=7547;DiscordantMatePairAlignments=60;LeftRepeat=;RightRepeat=L1M4c:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr2	CG	SV	116690523	116690809	60	-	.	ID=1099;Type=complex;Left=chr2:116690523-116690809;Right=chr2:116698356-116698751
chr2	CG	SV	116698356	116698751	60	-	.	ID=1099;Type=complex;Left=chr2:116690523-116690809;Right=chr2:116698356-116698751
chr2	CG	SV	116691104	116695204	39	.	.	ID=3713;Type=complex;Left=chr2:116691104-116691384+;Right=chr2:116694774-116695204+;Distance=3670;DiscordantMatePairAlignments=39;LeftRepeat=Charlie4:DNA:MER1_type;RightRepeat=L1M4c:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67592537 (chr2:116691104-116694774);Frequency=0.24
chr2	CG	SV	116691104	116691384	39	+	.	ID=3713;Type=complex;Left=chr2:116691104-116691384;Right=chr2:116694774-116695204
chr2	CG	SV	116694774	116695204	39	+	.	ID=3713;Type=complex;Left=chr2:116691104-116691384;Right=chr2:116694774-116695204
chr2	CG	SV	119762084	119767551	68	.	.	ID=3710;Type=deletion;Left=chr2:119762084-119762458+;Right=chr2:119767011-119767551+;Distance=4927;DiscordantMatePairAlignments=68;LeftRepeat=L1ME2:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	119762084	119762458	68	+	.	ID=3710;Type=deletion;Left=chr2:119762084-119762458;Right=chr2:119767011-119767551
chr2	CG	SV	119767011	119767551	68	+	.	ID=3710;Type=deletion;Left=chr2:119762084-119762458;Right=chr2:119767011-119767551
chr2	CG	SV	119998888	119999614	156	.	.	ID=1662;Type=tandem-duplication;Left=chr2:119998888-119999252-;Right=chr2:119999307-119999614-;Distance=362;DiscordantMatePairAlignments=156;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr2	CG	SV	119998888	119999252	156	-	.	ID=1662;Type=tandem-duplication;Left=chr2:119998888-119999252;Right=chr2:119999307-119999614
chr2	CG	SV	119999307	119999614	156	-	.	ID=1662;Type=tandem-duplication;Left=chr2:119998888-119999252;Right=chr2:119999307-119999614
chr2	CG	SV	120133425	120134958	60	.	.	ID=1661;Type=distal-duplication;Left=chr2:120133425-120133549-;Right=chr2:120134500-120134958-;Distance=1409;DiscordantMatePairAlignments=60;LeftRepeat=L1MC4a:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	120133425	120133549	60	-	.	ID=1661;Type=distal-duplication;Left=chr2:120133425-120133549;Right=chr2:120134500-120134958
chr2	CG	SV	120134500	120134958	60	-	.	ID=1661;Type=distal-duplication;Left=chr2:120133425-120133549;Right=chr2:120134500-120134958
chr2	CG	SV	120133670	120135416	38	.	.	ID=3709;Type=distal-duplication;Left=chr2:120133670-120133791+;Right=chr2:120134968-120135416+;Distance=1298;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72020679 (chr2:120133667-120134965);Frequency=0.94
chr2	CG	SV	120133670	120133791	38	+	.	ID=3709;Type=distal-duplication;Left=chr2:120133670-120133791;Right=chr2:120134968-120135416
chr2	CG	SV	120134968	120135416	38	+	.	ID=3709;Type=distal-duplication;Left=chr2:120133670-120133791;Right=chr2:120134968-120135416
chr2	CG	SV	123081348	123082315	47	.	.	ID=3708;Type=deletion;Left=chr2:123081348-123081834+;Right=chr2:123081846-123082315+;Distance=498;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr2	CG	SV	123081348	123081834	47	+	.	ID=3708;Type=deletion;Left=chr2:123081348-123081834;Right=chr2:123081846-123082315
chr2	CG	SV	123081846	123082315	47	+	.	ID=3708;Type=deletion;Left=chr2:123081348-123081834;Right=chr2:123081846-123082315
chr2	CG	SV	124768226	124769710	66	.	.	ID=4610;Type=distal-duplication;Left=chr2:124768226-124768701+;Right=chr2:124769382-124769710-;Distance=1484;DiscordantMatePairAlignments=66;LeftRepeat=;RightRepeat=MER41B:LTR:ERV1;LeftGenes=NM_130773:+;RightGenes=NM_130773:+;XRef=;Frequency=0.82
chr2	CG	SV	124768226	124768701	66	+	.	ID=4610;Type=distal-duplication;Left=chr2:124768226-124768701;Right=chr2:124769382-124769710
chr2	CG	SV	124769382	124769710	66	+	.	ID=4610;Type=distal-duplication;Left=chr2:124768226-124768701;Right=chr2:124769382-124769710
chr2	CG	SV	124767796	124769688	20	.	.	ID=1094;Type=distal-duplication;Left=chr2:124767796-124768229-;Right=chr2:124769384-124769688+;Distance=1155;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=;LeftGenes=NM_130773:+;RightGenes=NM_130773:+;XRef=;Frequency=0.82
chr2	CG	SV	124767796	124768229	20	-	.	ID=1094;Type=distal-duplication;Left=chr2:124767796-124768229;Right=chr2:124769384-124769688
chr2	CG	SV	124769384	124769688	20	-	.	ID=1094;Type=distal-duplication;Left=chr2:124767796-124768229;Right=chr2:124769384-124769688
chr2	CG	SV	125483031	125484875	29	.	.	ID=3707;Type=deletion;Left=chr2:125483031-125483347+;Right=chr2:125484718-125484875+;Distance=1687;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr2	CG	SV	125483031	125483347	29	+	.	ID=3707;Type=deletion;Left=chr2:125483031-125483347;Right=chr2:125484718-125484875
chr2	CG	SV	125484718	125484875	29	+	.	ID=3707;Type=deletion;Left=chr2:125483031-125483347;Right=chr2:125484718-125484875
chr2	CG	SV	126159721	126168917	134	.	.	ID=3706;Type=deletion;Left=chr2:126159721-126160288+;Right=chr2:126168305-126168917+;Distance=8584;DiscordantMatePairAlignments=134;LeftRepeat=L1MD1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66740069 (chr2:126159717-126168301);Frequency=0.88
chr2	CG	SV	126159721	126160288	134	+	.	ID=3706;Type=deletion;Left=chr2:126159721-126160288;Right=chr2:126168305-126168917
chr2	CG	SV	126168305	126168917	134	+	.	ID=3706;Type=deletion;Left=chr2:126159721-126160288;Right=chr2:126168305-126168917
chr2	CG	SV	127391226	127394130	149	.	.	ID=3705;Type=deletion;Left=chr2:127391226-127391691+;Right=chr2:127393742-127394130+;Distance=2516;DiscordantMatePairAlignments=149;LeftRepeat=;RightRepeat=L1MEd:LINE:L1;LeftGenes=;RightGenes=;XRef=rs74164329 (chr2:127391228-127393744);Frequency=1.00
chr2	CG	SV	127391226	127391691	149	+	.	ID=3705;Type=deletion;Left=chr2:127391226-127391691;Right=chr2:127393742-127394130
chr2	CG	SV	127393742	127394130	149	+	.	ID=3705;Type=deletion;Left=chr2:127391226-127391691;Right=chr2:127393742-127394130
chr2	CG	SV	131603360	131603571	29	.	.	ID=4609;Type=probable-inversion;Left=chr2:131603360-131603677+;Right=chr2:131603394-131603571-;Distance=211;DiscordantMatePairAlignments=29;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSq:SINE:Alu;Self chain;LeftGenes=NM_001100623:+;NM_017958:+;RightGenes=NM_001100623:+;NM_017958:+;XRef=;Frequency=0.94
chr2	CG	SV	131603360	131603677	29	+	.	ID=4609;Type=probable-inversion;Left=chr2:131603360-131603677;Right=chr2:131603394-131603571
chr2	CG	SV	131603394	131603571	29	+	.	ID=4609;Type=probable-inversion;Left=chr2:131603360-131603677;Right=chr2:131603394-131603571
chr2	CG	SV	132733902	132735679	561	.	.	ID=3704;Type=deletion;Left=chr2:132733902-132734455+;Right=chr2:132735172-132735679+;Distance=1270;DiscordantMatePairAlignments=561;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs72407802 (chr2:132733904-132735114);Frequency=1.00
chr2	CG	SV	132733902	132734455	561	+	.	ID=3704;Type=deletion;Left=chr2:132733902-132734455;Right=chr2:132735172-132735679
chr2	CG	SV	132735172	132735679	561	+	.	ID=3704;Type=deletion;Left=chr2:132733902-132734455;Right=chr2:132735172-132735679
chr2	CG	SV	132736940	132737501	56	+	.	ID=4369;Type=complex;Left=chr2:132736940-132737501+;Right=chr17:42569540-42569714-;Distance=;DiscordantMatePairAlignments=56;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=0.00
chr17	CG	SV	42569540	42569714	56	+	.	ID=4369;Type=complex;Left=chr2:132736940-132737501+;Right=chr17:42569540-42569714-;Distance=;DiscordantMatePairAlignments=56;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=0.00
chr2	CG	SV	132742755	132747162	218	.	.	ID=1657;Type=complex;Left=chr2:132742755-132743136-;Right=chr2:132746842-132747162-;Distance=4026;DiscordantMatePairAlignments=218;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	132742755	132743136	218	-	.	ID=1657;Type=complex;Left=chr2:132742755-132743136;Right=chr2:132746842-132747162
chr2	CG	SV	132746842	132747162	218	-	.	ID=1657;Type=complex;Left=chr2:132742755-132743136;Right=chr2:132746842-132747162
chr2	CG	SV	132747163	132747568	201	+	.	ID=4461;Type=complex;Left=chr2:132747163-132747568+;Right=chr16:33862760-33863532-;Distance=;DiscordantMatePairAlignments=201;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	33862760	33863532	201	+	.	ID=4461;Type=complex;Left=chr2:132747163-132747568+;Right=chr16:33862760-33863532-;Distance=;DiscordantMatePairAlignments=201;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	132747198	132747517	40	+	.	ID=3318;Type=complex;Left=chr2:132747198-132747517+;Right=chr12:36735025-36735173+;Distance=;DiscordantMatePairAlignments=40;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	36735025	36735173	40	+	.	ID=3318;Type=complex;Left=chr2:132747198-132747517+;Right=chr12:36735025-36735173+;Distance=;DiscordantMatePairAlignments=40;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	134683177	134687131	157	.	.	ID=3700;Type=deletion;Left=chr2:134683177-134683758+;Right=chr2:134686607-134687131+;Distance=3430;DiscordantMatePairAlignments=157;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67384749 (chr2:134683187-134686617);Frequency=0.94
chr2	CG	SV	134683177	134683758	157	+	.	ID=3700;Type=deletion;Left=chr2:134683177-134683758;Right=chr2:134686607-134687131
chr2	CG	SV	134686607	134687131	157	+	.	ID=3700;Type=deletion;Left=chr2:134683177-134683758;Right=chr2:134686607-134687131
chr2	CG	SV	141488007	141492203	28	.	.	ID=4607;Type=probable-inversion;Left=chr2:141488007-141488448+;Right=chr2:141491725-141492203-;Distance=4196;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=;LeftGenes=NM_018557:-;RightGenes=NM_018557:-;XRef=;Frequency=0.00
chr2	CG	SV	141488007	141488448	28	+	.	ID=4607;Type=probable-inversion;Left=chr2:141488007-141488448;Right=chr2:141491725-141492203
chr2	CG	SV	141491725	141492203	28	+	.	ID=4607;Type=probable-inversion;Left=chr2:141488007-141488448;Right=chr2:141491725-141492203
chr2	CG	SV	141907997	142006727	15	.	.	ID=3698;Type=deletion;Left=chr2:141907997-141908513+;Right=chr2:142006335-142006727+;Distance=98338;DiscordantMatePairAlignments=15;LeftRepeat=L1M4b:LINE:L1;Self chain;Tandem period 329;RightRepeat=;LeftGenes=NM_018557:-;RightGenes=NM_018557:-;XRef=;Frequency=0.00
chr2	CG	SV	141907997	141908513	15	+	.	ID=3698;Type=deletion;Left=chr2:141907997-141908513;Right=chr2:142006335-142006727
chr2	CG	SV	142006335	142006727	15	+	.	ID=3698;Type=deletion;Left=chr2:141907997-141908513;Right=chr2:142006335-142006727
chr2	CG	SV	141988451	141989086	35	-	.	ID=1604;Type=interchromosomal;Left=chr2:141988451-141989086-;Right=chr5:130351091-130351454-;Distance=;DiscordantMatePairAlignments=35;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_018557:-;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	130351091	130351454	35	-	.	ID=1604;Type=interchromosomal;Left=chr2:141988451-141989086-;Right=chr5:130351091-130351454-;Distance=;DiscordantMatePairAlignments=35;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_018557:-;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	146579091	146593875	53	.	.	ID=3696;Type=deletion;Left=chr2:146579091-146579459+;Right=chr2:146593334-146593875+;Distance=14243;DiscordantMatePairAlignments=53;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=MLT1H-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr2	CG	SV	146579091	146579459	53	+	.	ID=3696;Type=deletion;Left=chr2:146579091-146579459;Right=chr2:146593334-146593875
chr2	CG	SV	146593334	146593875	53	+	.	ID=3696;Type=deletion;Left=chr2:146579091-146579459;Right=chr2:146593334-146593875
chr2	CG	SV	153168162	153169680	13	.	.	ID=4606;Type=complex;Left=chr2:153168162-153168656+;Right=chr2:153169343-153169680-;Distance=1518;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=;LeftGenes=NM_052905:+;RightGenes=NM_052905:+;XRef=;Frequency=0.29
chr2	CG	SV	153168162	153168656	13	+	.	ID=4606;Type=complex;Left=chr2:153168162-153168656;Right=chr2:153169343-153169680
chr2	CG	SV	153169343	153169680	13	+	.	ID=4606;Type=complex;Left=chr2:153168162-153168656;Right=chr2:153169343-153169680
chr2	CG	SV	153168165	153169945	13	.	.	ID=3693;Type=complex;Left=chr2:153168165-153168313+;Right=chr2:153169692-153169945+;Distance=1527;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=;LeftGenes=NM_052905:+;RightGenes=NM_052905:+;XRef=;Frequency=0.29
chr2	CG	SV	153168165	153168313	13	+	.	ID=3693;Type=complex;Left=chr2:153168165-153168313;Right=chr2:153169692-153169945
chr2	CG	SV	153169692	153169945	13	+	.	ID=3693;Type=complex;Left=chr2:153168165-153168313;Right=chr2:153169692-153169945
chr2	CG	SV	153168999	153170042	11	.	.	ID=1091;Type=complex;Left=chr2:153168999-153169341-;Right=chr2:153169694-153170042+;Distance=353;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=;LeftGenes=NM_052905:+;RightGenes=NM_052905:+;XRef=;Frequency=0.29
chr2	CG	SV	153168999	153169341	11	-	.	ID=1091;Type=complex;Left=chr2:153168999-153169341;Right=chr2:153169694-153170042
chr2	CG	SV	153169694	153170042	11	-	.	ID=1091;Type=complex;Left=chr2:153168999-153169341;Right=chr2:153169694-153170042
chr2	CG	SV	153504241	153508419	17	.	.	ID=3692;Type=deletion;Left=chr2:153504241-153504607+;Right=chr2:153507989-153508419+;Distance=3748;DiscordantMatePairAlignments=17;LeftRepeat=L1PA14:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr2	CG	SV	153504241	153504607	17	+	.	ID=3692;Type=deletion;Left=chr2:153504241-153504607;Right=chr2:153507989-153508419
chr2	CG	SV	153507989	153508419	17	+	.	ID=3692;Type=deletion;Left=chr2:153504241-153504607;Right=chr2:153507989-153508419
chr2	CG	SV	159857367	159860271	87	.	.	ID=3691;Type=deletion;Left=chr2:159857367-159857885+;Right=chr2:159859898-159860271+;Distance=2531;DiscordantMatePairAlignments=87;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66496159 (chr2:159857363-159859894);Frequency=1.00
chr2	CG	SV	159857367	159857885	87	+	.	ID=3691;Type=deletion;Left=chr2:159857367-159857885;Right=chr2:159859898-159860271
chr2	CG	SV	159859898	159860271	87	+	.	ID=3691;Type=deletion;Left=chr2:159857367-159857885;Right=chr2:159859898-159860271
chr2	CG	SV	176973891	176980751	47	.	.	ID=3686;Type=deletion;Left=chr2:176973891-176974130+;Right=chr2:176980290-176980751+;Distance=6399;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66861570 (chr2:176973891-176980290);Frequency=0.82
chr2	CG	SV	176973891	176974130	47	+	.	ID=3686;Type=deletion;Left=chr2:176973891-176974130;Right=chr2:176980290-176980751
chr2	CG	SV	176980290	176980751	47	+	.	ID=3686;Type=deletion;Left=chr2:176973891-176974130;Right=chr2:176980290-176980751
chr2	CG	SV	177081925	177094907	33	.	.	ID=4605;Type=complex;Left=chr2:177081925-177082409+;Right=chr2:177094554-177094907-;Distance=12982;DiscordantMatePairAlignments=33;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	177081925	177082409	33	+	.	ID=4605;Type=complex;Left=chr2:177081925-177082409;Right=chr2:177094554-177094907
chr2	CG	SV	177094554	177094907	33	+	.	ID=4605;Type=complex;Left=chr2:177081925-177082409;Right=chr2:177094554-177094907
chr2	CG	SV	177085215	177094675	57	.	.	ID=1029;Type=complex;Left=chr2:177085215-177085681-;Right=chr2:177094247-177094675+;Distance=8566;DiscordantMatePairAlignments=57;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	177085215	177085681	57	-	.	ID=1029;Type=complex;Left=chr2:177085215-177085681;Right=chr2:177094247-177094675
chr2	CG	SV	177094247	177094675	57	-	.	ID=1029;Type=complex;Left=chr2:177085215-177085681;Right=chr2:177094247-177094675
chr2	CG	SV	182273509	182274313	10	.	.	ID=3684;Type=deletion;Left=chr2:182273509-182274067+;Right=chr2:182273837-182274313+;Distance=328;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67398526 (chr2:182273485-182273813);Frequency=1.00
chr2	CG	SV	182273509	182274067	10	+	.	ID=3684;Type=deletion;Left=chr2:182273509-182274067;Right=chr2:182273837-182274313
chr2	CG	SV	182273837	182274313	10	+	.	ID=3684;Type=deletion;Left=chr2:182273509-182274067;Right=chr2:182273837-182274313
chr2	CG	SV	188827864	188829541	20	.	.	ID=3680;Type=deletion;Left=chr2:188827864-188828294+;Right=chr2:188829227-188829541+;Distance=1363;DiscordantMatePairAlignments=20;LeftRepeat=L1ME1:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr2	CG	SV	188827864	188828294	20	+	.	ID=3680;Type=deletion;Left=chr2:188827864-188828294;Right=chr2:188829227-188829541
chr2	CG	SV	188829227	188829541	20	+	.	ID=3680;Type=deletion;Left=chr2:188827864-188828294;Right=chr2:188829227-188829541
chr2	CG	SV	195923061	195923864	21	.	.	ID=3677;Type=deletion;Left=chr2:195923061-195923534+;Right=chr2:195923473-195923864+;Distance=412;DiscordantMatePairAlignments=21;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67052058 (chr2:195923059-195923471);Frequency=0.94
chr2	CG	SV	195923061	195923534	21	+	.	ID=3677;Type=deletion;Left=chr2:195923061-195923534;Right=chr2:195923473-195923864
chr2	CG	SV	195923473	195923864	21	+	.	ID=3677;Type=deletion;Left=chr2:195923061-195923534;Right=chr2:195923473-195923864
chr2	CG	SV	201854903	201858146	56	.	.	ID=3676;Type=deletion;Left=chr2:201854903-201855321+;Right=chr2:201857695-201858146+;Distance=2792;DiscordantMatePairAlignments=56;LeftRepeat=SVA:Other:Other;RightRepeat=;LeftGenes=NM_001080124:+;NM_001080125:+;NM_001228:+;NM_033355:+;NM_033356:+;RightGenes=NM_001080124:+;NM_001080125:+;NM_001228:+;NM_033355:+;NM_033356:+;XRef=rs66948615 (chr2:201854903-201857695);Frequency=0.71
chr2	CG	SV	201854903	201855321	56	+	.	ID=3676;Type=deletion;Left=chr2:201854903-201855321;Right=chr2:201857695-201858146
chr2	CG	SV	201857695	201858146	56	+	.	ID=3676;Type=deletion;Left=chr2:201854903-201855321;Right=chr2:201857695-201858146
chr2	CG	SV	206439444	206440193	21	.	.	ID=3674;Type=deletion;Left=chr2:206439444-206440021+;Right=chr2:206439767-206440193+;Distance=323;DiscordantMatePairAlignments=21;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35551757 (chr2:206439427-206439750);Frequency=1.00
chr2	CG	SV	206439444	206440021	21	+	.	ID=3674;Type=deletion;Left=chr2:206439444-206440021;Right=chr2:206439767-206440193
chr2	CG	SV	206439767	206440193	21	+	.	ID=3674;Type=deletion;Left=chr2:206439444-206440021;Right=chr2:206439767-206440193
chr2	CG	SV	208798536	208806099	34	.	.	ID=3671;Type=deletion;Left=chr2:208798536-208799091+;Right=chr2:208805692-208806099+;Distance=7156;DiscordantMatePairAlignments=34;LeftRepeat=AluSq:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	208798536	208799091	34	+	.	ID=3671;Type=deletion;Left=chr2:208798536-208799091;Right=chr2:208805692-208806099
chr2	CG	SV	208805692	208806099	34	+	.	ID=3671;Type=deletion;Left=chr2:208798536-208799091;Right=chr2:208805692-208806099
chr2	CG	SV	211938534	211974554	44	.	.	ID=3667;Type=deletion;Left=chr2:211938534-211938950+;Right=chr2:211974154-211974554+;Distance=35620;DiscordantMatePairAlignments=44;LeftRepeat=LTR49:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=NM_001042599:-;NM_005235:-;XRef=;Frequency=0.00
chr2	CG	SV	211938534	211938950	44	+	.	ID=3667;Type=deletion;Left=chr2:211938534-211938950;Right=chr2:211974154-211974554
chr2	CG	SV	211974154	211974554	44	+	.	ID=3667;Type=deletion;Left=chr2:211938534-211938950;Right=chr2:211974154-211974554
chr2	CG	SV	212066574	212102851	19	.	.	ID=4603;Type=probable-inversion;Left=chr2:212066574-212067116+;Right=chr2:212102435-212102851-;Distance=36277;DiscordantMatePairAlignments=19;LeftRepeat=;RightRepeat=L1MA3:LINE:L1;LeftGenes=NM_001042599:-;NM_005235:-;RightGenes=NM_001042599:-;NM_005235:-;XRef=;Frequency=0.00
chr2	CG	SV	212066574	212067116	19	+	.	ID=4603;Type=probable-inversion;Left=chr2:212066574-212067116;Right=chr2:212102435-212102851
chr2	CG	SV	212102435	212102851	19	+	.	ID=4603;Type=probable-inversion;Left=chr2:212066574-212067116;Right=chr2:212102435-212102851
chr2	CG	SV	212083874	212162690	40	.	.	ID=1028;Type=probable-inversion;Left=chr2:212083874-212084374-;Right=chr2:212162331-212162690+;Distance=77957;DiscordantMatePairAlignments=40;LeftRepeat=;RightRepeat=;LeftGenes=NM_001042599:-;NM_005235:-;RightGenes=NM_001042599:-;NM_005235:-;XRef=;Frequency=0.00
chr2	CG	SV	212083874	212084374	40	-	.	ID=1028;Type=probable-inversion;Left=chr2:212083874-212084374;Right=chr2:212162331-212162690
chr2	CG	SV	212162331	212162690	40	-	.	ID=1028;Type=probable-inversion;Left=chr2:212083874-212084374;Right=chr2:212162331-212162690
chr2	CG	SV	216798182	216800913	29	.	.	ID=3666;Type=deletion;Left=chr2:216798182-216798679+;Right=chr2:216800750-216800913+;Distance=2568;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	216798182	216798679	29	+	.	ID=3666;Type=deletion;Left=chr2:216798182-216798679;Right=chr2:216800750-216800913
chr2	CG	SV	216800750	216800913	29	+	.	ID=3666;Type=deletion;Left=chr2:216798182-216798679;Right=chr2:216800750-216800913
chr2	CG	SV	221793995	221798302	76	.	.	ID=3663;Type=deletion;Left=chr2:221793995-221794362+;Right=chr2:221797856-221798302+;Distance=3861;DiscordantMatePairAlignments=76;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	221793995	221794362	76	+	.	ID=3663;Type=deletion;Left=chr2:221793995-221794362;Right=chr2:221797856-221798302
chr2	CG	SV	221797856	221798302	76	+	.	ID=3663;Type=deletion;Left=chr2:221793995-221794362;Right=chr2:221797856-221798302
chr2	CG	SV	223468431	223471386	61	.	.	ID=3662;Type=deletion;Left=chr2:223468431-223468898+;Right=chr2:223470924-223471386+;Distance=2493;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=;LeftGenes=NM_004457:+;NM_203372:+;RightGenes=NM_004457:+;NM_203372:+;XRef=rs67796571 (chr2:223468435-223470928);Frequency=0.94
chr2	CG	SV	223468431	223468898	61	+	.	ID=3662;Type=deletion;Left=chr2:223468431-223468898;Right=chr2:223470924-223471386
chr2	CG	SV	223470924	223471386	61	+	.	ID=3662;Type=deletion;Left=chr2:223468431-223468898;Right=chr2:223470924-223471386
chr2	CG	SV	225747827	225748749	61	.	.	ID=3660;Type=deletion;Left=chr2:225747827-225748305+;Right=chr2:225748304-225748749+;Distance=477;DiscordantMatePairAlignments=61;LeftRepeat=Self chain;RightRepeat=Alu:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	225747827	225748305	61	+	.	ID=3660;Type=deletion;Left=chr2:225747827-225748305;Right=chr2:225748304-225748749
chr2	CG	SV	225748304	225748749	61	+	.	ID=3660;Type=deletion;Left=chr2:225747827-225748305;Right=chr2:225748304-225748749
chr2	CG	SV	232809146	232938513	32	.	.	ID=3657;Type=deletion;Left=chr2:232809146-232809686+;Right=chr2:232938046-232938513+;Distance=128900;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_152383:+;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	232809146	232809686	32	+	.	ID=3657;Type=deletion;Left=chr2:232809146-232809686;Right=chr2:232938046-232938513
chr2	CG	SV	232938046	232938513	32	+	.	ID=3657;Type=deletion;Left=chr2:232809146-232809686;Right=chr2:232938046-232938513
chr2	CG	SV	237596582	237612458	48	.	.	ID=3655;Type=deletion;Left=chr2:237596582-237597089+;Right=chr2:237611957-237612458+;Distance=15375;DiscordantMatePairAlignments=48;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	237596582	237597089	48	+	.	ID=3655;Type=deletion;Left=chr2:237596582-237597089;Right=chr2:237611957-237612458
chr2	CG	SV	237611957	237612458	48	+	.	ID=3655;Type=deletion;Left=chr2:237596582-237597089;Right=chr2:237611957-237612458
chr2	CG	SV	239655547	239656744	11	.	.	ID=3654;Type=deletion;Left=chr2:239655547-239655827+;Right=chr2:239656478-239656744+;Distance=931;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 49;RightRepeat=Self chain;LeftGenes=NM_006037:-;RightGenes=NM_006037:-;XRef=;Frequency=0.29
chr2	CG	SV	239655547	239655827	11	+	.	ID=3654;Type=deletion;Left=chr2:239655547-239655827;Right=chr2:239656478-239656744
chr2	CG	SV	239656478	239656744	11	+	.	ID=3654;Type=deletion;Left=chr2:239655547-239655827;Right=chr2:239656478-239656744
chr2	CG	SV	240630203	240631243	18	.	.	ID=3651;Type=deletion;Left=chr2:240630203-240630567+;Right=chr2:240630819-240631243+;Distance=616;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;Tandem period 14;Tandem period 56;Tandem period 84;RightRepeat=Self chain;Tandem period 14;Tandem period 56;Tandem period 84;LeftGenes=NM_001080835:-;RightGenes=NM_001080835:-;XRef=;Frequency=0.59
chr2	CG	SV	240630203	240630567	18	+	.	ID=3651;Type=deletion;Left=chr2:240630203-240630567;Right=chr2:240630819-240631243
chr2	CG	SV	240630819	240631243	18	+	.	ID=3651;Type=deletion;Left=chr2:240630203-240630567;Right=chr2:240630819-240631243
chr3	CG	SV	10372475	10373402	61	.	.	ID=3642;Type=deletion;Left=chr3:10372475-10373019+;Right=chr3:10372824-10373402+;Distance=349;DiscordantMatePairAlignments=61;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_001001331:-;NM_001683:-;RightGenes=NM_001001331:-;NM_001683:-;XRef=;Frequency=1.00
chr3	CG	SV	10372475	10373019	61	+	.	ID=3642;Type=deletion;Left=chr3:10372475-10373019;Right=chr3:10372824-10373402
chr3	CG	SV	10372824	10373402	61	+	.	ID=3642;Type=deletion;Left=chr3:10372475-10373019;Right=chr3:10372824-10373402
chr3	CG	SV	21108697	21483344	77	.	.	ID=3639;Type=deletion;Left=chr3:21108697-21109151+;Right=chr3:21482864-21483344+;Distance=374167;DiscordantMatePairAlignments=77;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_024697:-;XRef=;Frequency=0.00
chr3	CG	SV	21108697	21109151	77	+	.	ID=3639;Type=deletion;Left=chr3:21108697-21109151;Right=chr3:21482864-21483344
chr3	CG	SV	21482864	21483344	77	+	.	ID=3639;Type=deletion;Left=chr3:21108697-21109151;Right=chr3:21482864-21483344
chr3	CG	SV	21491018	21491487	95	+	.	ID=3202;Type=interchromosomal;Left=chr3:21491018-21491487+;Right=chr19:48981115-48981604+;Distance=;DiscordantMatePairAlignments=95;LeftRepeat=;RightRepeat=MSR1:Satellite:Satellite;Self chain;Tandem period 36;LeftGenes=NM_024697:-;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	48981115	48981604	95	+	.	ID=3202;Type=interchromosomal;Left=chr3:21491018-21491487+;Right=chr19:48981115-48981604+;Distance=;DiscordantMatePairAlignments=95;LeftRepeat=;RightRepeat=MSR1:Satellite:Satellite;Self chain;Tandem period 36;LeftGenes=NM_024697:-;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	22067365	22073440	21	.	.	ID=3637;Type=deletion;Left=chr3:22067365-22067842+;Right=chr3:22072813-22073440+;Distance=5448;DiscordantMatePairAlignments=21;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67464987 (chr3:22067365-22072813);Frequency=0.88
chr3	CG	SV	22067365	22067842	21	+	.	ID=3637;Type=deletion;Left=chr3:22067365-22067842;Right=chr3:22072813-22073440
chr3	CG	SV	22072813	22073440	21	+	.	ID=3637;Type=deletion;Left=chr3:22067365-22067842;Right=chr3:22072813-22073440
chr3	CG	SV	23514835	25356513	96	.	.	ID=1650;Type=tandem-duplication;Left=chr3:23514835-23515499-;Right=chr3:25356103-25356513-;Distance=1841014;DiscordantMatePairAlignments=96;LeftRepeat=;RightRepeat=;LeftGenes=NM_152653:+;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	23514835	23515499	96	-	.	ID=1650;Type=tandem-duplication;Left=chr3:23514835-23515499;Right=chr3:25356103-25356513
chr3	CG	SV	25356103	25356513	96	-	.	ID=1650;Type=tandem-duplication;Left=chr3:23514835-23515499;Right=chr3:25356103-25356513
chr3	CG	SV	25005891	25007641	53	.	.	ID=3634;Type=deletion;Left=chr3:25005891-25006263+;Right=chr3:25007253-25007641+;Distance=1362;DiscordantMatePairAlignments=53;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=L1ME3B:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72404999 (chr3:25005891-25007246);Frequency=0.65
chr3	CG	SV	25005891	25006263	53	+	.	ID=3634;Type=deletion;Left=chr3:25005891-25006263;Right=chr3:25007253-25007641
chr3	CG	SV	25007253	25007641	53	+	.	ID=3634;Type=deletion;Left=chr3:25005891-25006263;Right=chr3:25007253-25007641
chr3	CG	SV	26425974	26427798	42	.	.	ID=3633;Type=deletion;Left=chr3:26425974-26426401+;Right=chr3:26427303-26427798+;Distance=1329;DiscordantMatePairAlignments=42;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66805914 (chr3:26425974-26427303);Frequency=0.94
chr3	CG	SV	26425974	26426401	42	+	.	ID=3633;Type=deletion;Left=chr3:26425974-26426401;Right=chr3:26427303-26427798
chr3	CG	SV	26427303	26427798	42	+	.	ID=3633;Type=deletion;Left=chr3:26425974-26426401;Right=chr3:26427303-26427798
chr3	CG	SV	32077056	32083365	97	.	.	ID=3632;Type=deletion;Left=chr3:32077056-32077509+;Right=chr3:32082889-32083365+;Distance=5833;DiscordantMatePairAlignments=97;LeftRepeat=;RightRepeat=MER31B:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs71946771 (chr3:32077054-32082887);Frequency=0.94
chr3	CG	SV	32077056	32077509	97	+	.	ID=3632;Type=deletion;Left=chr3:32077056-32077509;Right=chr3:32082889-32083365
chr3	CG	SV	32082889	32083365	97	+	.	ID=3632;Type=deletion;Left=chr3:32077056-32077509;Right=chr3:32082889-32083365
chr3	CG	SV	32781826	32783432	17	.	.	ID=3630;Type=deletion;Left=chr3:32781826-32782315+;Right=chr3:32783141-32783432+;Distance=1315;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_015442:+;RightGenes=NM_015442:+;XRef=rs71052665 (chr3:32781767-32783082);Frequency=0.94
chr3	CG	SV	32781826	32782315	17	+	.	ID=3630;Type=deletion;Left=chr3:32781826-32782315;Right=chr3:32783141-32783432
chr3	CG	SV	32783141	32783432	17	+	.	ID=3630;Type=deletion;Left=chr3:32781826-32782315;Right=chr3:32783141-32783432
chr3	CG	SV	42813377	42816339	49	.	.	ID=3627;Type=deletion;Left=chr3:42813377-42813821+;Right=chr3:42815831-42816339+;Distance=2454;DiscordantMatePairAlignments=49;LeftRepeat=;RightRepeat=LTR8:LTR:ERV1;LeftGenes=NM_001099668:-;NM_001099669:-;NM_014056:-;RightGenes=NM_001099668:-;NM_001099669:-;NM_014056:-;XRef=rs71052669 (chr3:42813377-42815831);Frequency=1.00
chr3	CG	SV	42813377	42813821	49	+	.	ID=3627;Type=deletion;Left=chr3:42813377-42813821;Right=chr3:42815831-42816339
chr3	CG	SV	42815831	42816339	49	+	.	ID=3627;Type=deletion;Left=chr3:42813377-42813821;Right=chr3:42815831-42816339
chr3	CG	SV	44715513	44717413	10	.	.	ID=1027;Type=distal-duplication;Left=chr3:44715513-44715996-;Right=chr3:44717287-44717413+;Distance=1291;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	44715513	44715996	10	-	.	ID=1027;Type=distal-duplication;Left=chr3:44715513-44715996;Right=chr3:44717287-44717413
chr3	CG	SV	44717287	44717413	10	-	.	ID=1027;Type=distal-duplication;Left=chr3:44715513-44715996;Right=chr3:44717287-44717413
chr3	CG	SV	44716161	44717125	14	.	.	ID=4601;Type=distal-duplication;Left=chr3:44716161-44716478+;Right=chr3:44716833-44717125-;Distance=964;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	44716161	44716478	14	+	.	ID=4601;Type=distal-duplication;Left=chr3:44716161-44716478;Right=chr3:44716833-44717125
chr3	CG	SV	44716833	44717125	14	+	.	ID=4601;Type=distal-duplication;Left=chr3:44716161-44716478;Right=chr3:44716833-44717125
chr3	CG	SV	45584926	45585705	42	.	.	ID=3625;Type=deletion;Left=chr3:45584926-45585460+;Right=chr3:45585342-45585705+;Distance=416;DiscordantMatePairAlignments=42;LeftRepeat=L1PA14:LINE:L1;RightRepeat=L1PA14:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71052671 (chr3:45584851-45585267);Frequency=1.00
chr3	CG	SV	45584926	45585460	42	+	.	ID=3625;Type=deletion;Left=chr3:45584926-45585460;Right=chr3:45585342-45585705
chr3	CG	SV	45585342	45585705	42	+	.	ID=3625;Type=deletion;Left=chr3:45584926-45585460;Right=chr3:45585342-45585705
chr3	CG	SV	47465673	47468849	79	.	.	ID=3624;Type=deletion;Left=chr3:47465673-47466082+;Right=chr3:47468446-47468849+;Distance=2773;DiscordantMatePairAlignments=79;LeftRepeat=L1MD2:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=NM_012235:-;RightGenes=NM_012235:-;XRef=rs71996089 (chr3:47465671-47468444);Frequency=0.47
chr3	CG	SV	47465673	47466082	79	+	.	ID=3624;Type=deletion;Left=chr3:47465673-47466082;Right=chr3:47468446-47468849
chr3	CG	SV	47468446	47468849	79	+	.	ID=3624;Type=deletion;Left=chr3:47465673-47466082;Right=chr3:47468446-47468849
chr3	CG	SV	49469291	49470047	21	.	.	ID=3622;Type=deletion;Left=chr3:49469291-49469750+;Right=chr3:49469620-49470047+;Distance=329;DiscordantMatePairAlignments=21;LeftRepeat=MIRb:SINE:MIR;Tandem T;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs6147818 (chr3:49469280-49469609);Frequency=1.00
chr3	CG	SV	49469291	49469750	21	+	.	ID=3622;Type=deletion;Left=chr3:49469291-49469750;Right=chr3:49469620-49470047
chr3	CG	SV	49469620	49470047	21	+	.	ID=3622;Type=deletion;Left=chr3:49469291-49469750;Right=chr3:49469620-49470047
chr3	CG	SV	60818746	62727301	99	.	.	ID=1643;Type=tandem-duplication;Left=chr3:60818746-60819237-;Right=chr3:62726906-62727301-;Distance=1908064;DiscordantMatePairAlignments=99;LeftRepeat=;RightRepeat=;LeftGenes=NM_001166243:-;NM_002012:-;RightGenes=NM_003716:-;NM_183393:-;NM_183394:-;XRef=;Frequency=0.00
chr3	CG	SV	60818746	60819237	99	-	.	ID=1643;Type=tandem-duplication;Left=chr3:60818746-60819237;Right=chr3:62726906-62727301
chr3	CG	SV	62726906	62727301	99	-	.	ID=1643;Type=tandem-duplication;Left=chr3:60818746-60819237;Right=chr3:62726906-62727301
chr3	CG	SV	63109897	63110805	34	.	.	ID=3620;Type=deletion;Left=chr3:63109897-63110305+;Right=chr3:63110350-63110805+;Distance=453;DiscordantMatePairAlignments=34;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs68090124 (chr3:63109897-63110350);Frequency=0.00
chr3	CG	SV	63109897	63110305	34	+	.	ID=3620;Type=deletion;Left=chr3:63109897-63110305;Right=chr3:63110350-63110805
chr3	CG	SV	63110350	63110805	34	+	.	ID=3620;Type=deletion;Left=chr3:63109897-63110305;Right=chr3:63110350-63110805
chr3	CG	SV	65092942	65095076	49	.	.	ID=3619;Type=deletion;Left=chr3:65092942-65093467+;Right=chr3:65094814-65095076+;Distance=1872;DiscordantMatePairAlignments=49;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr3	CG	SV	65092942	65093467	49	+	.	ID=3619;Type=deletion;Left=chr3:65092942-65093467;Right=chr3:65094814-65095076
chr3	CG	SV	65094814	65095076	49	+	.	ID=3619;Type=deletion;Left=chr3:65092942-65093467;Right=chr3:65094814-65095076
chr3	CG	SV	67576389	67579972	23	.	.	ID=3617;Type=deletion;Left=chr3:67576389-67576859+;Right=chr3:67579493-67579972+;Distance=3104;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_003848:-;RightGenes=NM_003848:-;XRef=rs71052690 (chr3:67576398-67579502);Frequency=1.00
chr3	CG	SV	67576389	67576859	23	+	.	ID=3617;Type=deletion;Left=chr3:67576389-67576859;Right=chr3:67579493-67579972
chr3	CG	SV	67579493	67579972	23	+	.	ID=3617;Type=deletion;Left=chr3:67576389-67576859;Right=chr3:67579493-67579972
chr3	CG	SV	75359579	75361909	65	.	.	ID=3614;Type=deletion;Left=chr3:75359579-75360160+;Right=chr3:75361608-75361909+;Distance=2029;DiscordantMatePairAlignments=65;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72396976 (chr3:75359579-75361608);Frequency=1.00
chr3	CG	SV	75359579	75360160	65	+	.	ID=3614;Type=deletion;Left=chr3:75359579-75360160;Right=chr3:75361608-75361909
chr3	CG	SV	75361608	75361909	65	+	.	ID=3614;Type=deletion;Left=chr3:75359579-75360160;Right=chr3:75361608-75361909
chr3	CG	SV	75779105	75780015	16	.	.	ID=3612;Type=deletion;Left=chr3:75779105-75779448+;Right=chr3:75779328-75780015+;Distance=223;DiscordantMatePairAlignments=16;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	75779105	75779448	16	+	.	ID=3612;Type=deletion;Left=chr3:75779105-75779448;Right=chr3:75779328-75780015
chr3	CG	SV	75779328	75780015	16	+	.	ID=3612;Type=deletion;Left=chr3:75779105-75779448;Right=chr3:75779328-75780015
chr3	CG	SV	75869901	75870808	11	.	.	ID=3610;Type=deletion;Left=chr3:75869901-75870260+;Right=chr3:75870489-75870808+;Distance=588;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 84;RightRepeat=Self chain;LeftGenes=NM_001128223:-;RightGenes=NM_001128223:-;XRef=;Frequency=0.88
chr3	CG	SV	75869901	75870260	11	+	.	ID=3610;Type=deletion;Left=chr3:75869901-75870260;Right=chr3:75870489-75870808
chr3	CG	SV	75870489	75870808	11	+	.	ID=3610;Type=deletion;Left=chr3:75869901-75870260;Right=chr3:75870489-75870808
chr3	CG	SV	76097055	76097427	38	.	.	ID=1641;Type=tandem-duplication;Left=chr3:76097055-76097246-;Right=chr3:76097247-76097427-;Distance=181;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	76097055	76097246	38	-	.	ID=1641;Type=tandem-duplication;Left=chr3:76097055-76097246;Right=chr3:76097247-76097427
chr3	CG	SV	76097247	76097427	38	-	.	ID=1641;Type=tandem-duplication;Left=chr3:76097055-76097246;Right=chr3:76097247-76097427
chr3	CG	SV	81008004	81009822	33	.	.	ID=3605;Type=deletion;Left=chr3:81008004-81008333+;Right=chr3:81009297-81009822+;Distance=1293;DiscordantMatePairAlignments=33;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71052702 (chr3:81008004-81009297);Frequency=0.88
chr3	CG	SV	81008004	81008333	33	+	.	ID=3605;Type=deletion;Left=chr3:81008004-81008333;Right=chr3:81009297-81009822
chr3	CG	SV	81009297	81009822	33	+	.	ID=3605;Type=deletion;Left=chr3:81008004-81008333;Right=chr3:81009297-81009822
chr3	CG	SV	84187632	84190464	14	.	.	ID=3603;Type=deletion;Left=chr3:84187632-84187951+;Right=chr3:84190074-84190464+;Distance=2442;DiscordantMatePairAlignments=14;LeftRepeat=L1MC1:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr3	CG	SV	84187632	84187951	14	+	.	ID=3603;Type=deletion;Left=chr3:84187632-84187951;Right=chr3:84190074-84190464
chr3	CG	SV	84190074	84190464	14	+	.	ID=3603;Type=deletion;Left=chr3:84187632-84187951;Right=chr3:84190074-84190464
chr3	CG	SV	101111472	101112809	144	.	.	ID=3595;Type=deletion;Left=chr3:101111472-101111921+;Right=chr3:101112321-101112809+;Distance=849;DiscordantMatePairAlignments=144;LeftRepeat=;RightRepeat=;LeftGenes=NM_001042459:-;NM_032359:+;NM_182909:-;RightGenes=NM_001042459:-;NM_032359:+;NM_182909:-;XRef=rs71970440 (chr3:101111473-101112321);Frequency=0.47
chr3	CG	SV	101111472	101111921	144	+	.	ID=3595;Type=deletion;Left=chr3:101111472-101111921;Right=chr3:101112321-101112809
chr3	CG	SV	101112321	101112809	144	+	.	ID=3595;Type=deletion;Left=chr3:101111472-101111921;Right=chr3:101112321-101112809
chr3	CG	SV	103766477	103767273	11	.	.	ID=3593;Type=deletion;Left=chr3:103766477-103767028+;Right=chr3:103766815-103767273+;Distance=338;DiscordantMatePairAlignments=11;LeftRepeat=Tandem T;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs10524232 (chr3:103766464-103766802);Frequency=0.76
chr3	CG	SV	103766477	103767028	11	+	.	ID=3593;Type=deletion;Left=chr3:103766477-103767028;Right=chr3:103766815-103767273
chr3	CG	SV	103766815	103767273	11	+	.	ID=3593;Type=deletion;Left=chr3:103766477-103767028;Right=chr3:103766815-103767273
chr3	CG	SV	105760890	105762091	10	.	.	ID=3592;Type=deletion;Left=chr3:105760890-105761230+;Right=chr3:105761737-105762091+;Distance=847;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67066218 (chr3:105760889-105761736);Frequency=0.41
chr3	CG	SV	105760890	105761230	10	+	.	ID=3592;Type=deletion;Left=chr3:105760890-105761230;Right=chr3:105761737-105762091
chr3	CG	SV	105761737	105762091	10	+	.	ID=3592;Type=deletion;Left=chr3:105760890-105761230;Right=chr3:105761737-105762091
chr3	CG	SV	106558358	106561131	35	.	.	ID=3591;Type=deletion;Left=chr3:106558358-106558789+;Right=chr3:106560683-106561131+;Distance=2325;DiscordantMatePairAlignments=35;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr3	CG	SV	106558358	106558789	35	+	.	ID=3591;Type=deletion;Left=chr3:106558358-106558789;Right=chr3:106560683-106561131
chr3	CG	SV	106560683	106561131	35	+	.	ID=3591;Type=deletion;Left=chr3:106558358-106558789;Right=chr3:106560683-106561131
chr3	CG	SV	107311548	107314825	13	.	.	ID=3589;Type=deletion;Left=chr3:107311548-107312002+;Right=chr3:107314315-107314825+;Distance=2767;DiscordantMatePairAlignments=13;LeftRepeat=MLT1A0:LTR:MaLR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr3	CG	SV	107311548	107312002	13	+	.	ID=3589;Type=deletion;Left=chr3:107311548-107312002;Right=chr3:107314315-107314825
chr3	CG	SV	107314315	107314825	13	+	.	ID=3589;Type=deletion;Left=chr3:107311548-107312002;Right=chr3:107314315-107314825
chr3	CG	SV	117943518	118222930	100	.	.	ID=3585;Type=deletion;Left=chr3:117943518-117944003+;Right=chr3:118222432-118222930+;Distance=278914;DiscordantMatePairAlignments=100;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	117943518	117944003	100	+	.	ID=3585;Type=deletion;Left=chr3:117943518-117944003;Right=chr3:118222432-118222930
chr3	CG	SV	118222432	118222930	100	+	.	ID=3585;Type=deletion;Left=chr3:117943518-117944003;Right=chr3:118222432-118222930
chr3	CG	SV	118202899	118357885	51	.	.	ID=3584;Type=deletion;Left=chr3:118202899-118203476+;Right=chr3:118357450-118357885+;Distance=154551;DiscordantMatePairAlignments=51;LeftRepeat=;RightRepeat=MIR3:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	118202899	118203476	51	+	.	ID=3584;Type=deletion;Left=chr3:118202899-118203476;Right=chr3:118357450-118357885
chr3	CG	SV	118357450	118357885	51	+	.	ID=3584;Type=deletion;Left=chr3:118202899-118203476;Right=chr3:118357450-118357885
chr3	CG	SV	121376675	121377642	80	.	.	ID=3583;Type=deletion;Left=chr3:121376675-121377191+;Right=chr3:121377135-121377642+;Distance=460;DiscordantMatePairAlignments=80;LeftRepeat=;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=NM_001168271:-;NM_153002:-;RightGenes=NM_001168271:-;NM_153002:-;XRef=rs67310162 (chr3:121376675-121377135);Frequency=1.00
chr3	CG	SV	121376675	121377191	80	+	.	ID=3583;Type=deletion;Left=chr3:121376675-121377191;Right=chr3:121377135-121377642
chr3	CG	SV	121377135	121377642	80	+	.	ID=3583;Type=deletion;Left=chr3:121376675-121377191;Right=chr3:121377135-121377642
chr3	CG	SV	126418990	126420345	33	.	.	ID=3579;Type=deletion;Left=chr3:126418990-126419228+;Right=chr3:126419859-126420345+;Distance=869;DiscordantMatePairAlignments=33;LeftRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72308239 (chr3:126418985-126419853);Frequency=0.82
chr3	CG	SV	126418990	126419228	33	+	.	ID=3579;Type=deletion;Left=chr3:126418990-126419228;Right=chr3:126419859-126420345
chr3	CG	SV	126419859	126420345	33	+	.	ID=3579;Type=deletion;Left=chr3:126418990-126419228;Right=chr3:126419859-126420345
chr3	CG	SV	127841628	127842471	14	.	.	ID=3578;Type=deletion;Left=chr3:127841628-127842196+;Right=chr3:127841955-127842471+;Distance=327;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs34005180 (chr3:127841612-127841939);Frequency=1.00
chr3	CG	SV	127841628	127842196	14	+	.	ID=3578;Type=deletion;Left=chr3:127841628-127842196;Right=chr3:127841955-127842471
chr3	CG	SV	127841955	127842471	14	+	.	ID=3578;Type=deletion;Left=chr3:127841628-127842196;Right=chr3:127841955-127842471
chr3	CG	SV	131830267	131836282	23	.	.	ID=3576;Type=deletion;Left=chr3:131830267-131830617+;Right=chr3:131835809-131836282+;Distance=5542;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=;LeftGenes=NM_001102608:+;RightGenes=NM_001102608:+;XRef=rs72337912 (chr3:131830267-131835809);Frequency=0.35
chr3	CG	SV	131830267	131830617	23	+	.	ID=3576;Type=deletion;Left=chr3:131830267-131830617;Right=chr3:131835809-131836282
chr3	CG	SV	131835809	131836282	23	+	.	ID=3576;Type=deletion;Left=chr3:131830267-131830617;Right=chr3:131835809-131836282
chr3	CG	SV	132067158	132068806	21	.	.	ID=3575;Type=deletion;Left=chr3:132067158-132067520+;Right=chr3:132068442-132068806+;Distance=1284;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;THE1A:LTR:MaLR;RightRepeat=Tigger1:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	132067158	132067520	21	+	.	ID=3575;Type=deletion;Left=chr3:132067158-132067520;Right=chr3:132068442-132068806
chr3	CG	SV	132068442	132068806	21	+	.	ID=3575;Type=deletion;Left=chr3:132067158-132067520;Right=chr3:132068442-132068806
chr3	CG	SV	133190943	133196470	27	.	.	ID=3574;Type=deletion;Left=chr3:133190943-133191431+;Right=chr3:133196074-133196470+;Distance=5131;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=;LeftGenes=NM_130808:-;RightGenes=NM_130808:-;XRef=;Frequency=0.59
chr3	CG	SV	133190943	133191431	27	+	.	ID=3574;Type=deletion;Left=chr3:133190943-133191431;Right=chr3:133196074-133196470
chr3	CG	SV	133196074	133196470	27	+	.	ID=3574;Type=deletion;Left=chr3:133190943-133191431;Right=chr3:133196074-133196470
chr3	CG	SV	133471886	133478193	19	.	.	ID=3573;Type=deletion;Left=chr3:133471886-133472271+;Right=chr3:133477843-133478193+;Distance=5957;DiscordantMatePairAlignments=19;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67599226 (chr3:133471815-133477774);Frequency=0.41
chr3	CG	SV	133471886	133472271	19	+	.	ID=3573;Type=deletion;Left=chr3:133471886-133472271;Right=chr3:133477843-133478193
chr3	CG	SV	133477843	133478193	19	+	.	ID=3573;Type=deletion;Left=chr3:133471886-133472271;Right=chr3:133477843-133478193
chr3	CG	SV	134986461	134988225	93	.	.	ID=3572;Type=deletion;Left=chr3:134986461-134986886+;Right=chr3:134987777-134988225+;Distance=1316;DiscordantMatePairAlignments=93;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71056134 (chr3:134986472-134987788);Frequency=0.53
chr3	CG	SV	134986461	134986886	93	+	.	ID=3572;Type=deletion;Left=chr3:134986461-134986886;Right=chr3:134987777-134988225
chr3	CG	SV	134987777	134988225	93	+	.	ID=3572;Type=deletion;Left=chr3:134986461-134986886;Right=chr3:134987777-134988225
chr3	CG	SV	136156606	136157787	92	.	.	ID=3571;Type=deletion;Left=chr3:136156606-136157096+;Right=chr3:136157259-136157787+;Distance=653;DiscordantMatePairAlignments=92;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=NM_004441:+;RightGenes=NM_004441:+;XRef=rs66977021 (chr3:136156606-136157259);Frequency=0.82
chr3	CG	SV	136156606	136157096	92	+	.	ID=3571;Type=deletion;Left=chr3:136156606-136157096;Right=chr3:136157259-136157787
chr3	CG	SV	136157259	136157787	92	+	.	ID=3571;Type=deletion;Left=chr3:136156606-136157096;Right=chr3:136157259-136157787
chr3	CG	SV	137822765	137823177	13	+	.	ID=4354;Type=interchromosomal;Left=chr3:137822765-137823177+;Right=chr16:594283-594697-;Distance=;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=L1ME2:LINE:L1;Self chain;LeftGenes=NM_005862:-;RightGenes=NM_021168:+;XRef=;Frequency=0.00
chr16	CG	SV	594283	594697	13	+	.	ID=4354;Type=interchromosomal;Left=chr3:137822765-137823177+;Right=chr16:594283-594697-;Distance=;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=L1ME2:LINE:L1;Self chain;LeftGenes=NM_005862:-;RightGenes=NM_021168:+;XRef=;Frequency=0.00
chr3	CG	SV	142103522	142105048	27	.	.	ID=1639;Type=tandem-duplication;Left=chr3:142103522-142103797-;Right=chr3:142104726-142105048-;Distance=1251;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;RightRepeat=Tigger3b:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr3	CG	SV	142103522	142103797	27	-	.	ID=1639;Type=tandem-duplication;Left=chr3:142103522-142103797;Right=chr3:142104726-142105048
chr3	CG	SV	142104726	142105048	27	-	.	ID=1639;Type=tandem-duplication;Left=chr3:142103522-142103797;Right=chr3:142104726-142105048
chr3	CG	SV	147867880	147877855	10	.	.	ID=3565;Type=complex;Left=chr3:147867880-147868213+;Right=chr3:147877553-147877855+;Distance=9673;DiscordantMatePairAlignments=10;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs72156653 (chr3:147867880-147877553);Frequency=0.94
chr3	CG	SV	147867880	147868213	10	+	.	ID=3565;Type=complex;Left=chr3:147867880-147868213;Right=chr3:147877553-147877855
chr3	CG	SV	147877553	147877855	10	+	.	ID=3565;Type=complex;Left=chr3:147867880-147868213;Right=chr3:147877553-147877855
chr3	CG	SV	147867880	147873332	11	.	.	ID=3566;Type=complex;Left=chr3:147867880-147868070+;Right=chr3:147873094-147873332+;Distance=5214;DiscordantMatePairAlignments=11;LeftRepeat=L2:LINE:L2;RightRepeat=L1PA16:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	147867880	147868070	11	+	.	ID=3566;Type=complex;Left=chr3:147867880-147868070;Right=chr3:147873094-147873332
chr3	CG	SV	147873094	147873332	11	+	.	ID=3566;Type=complex;Left=chr3:147867880-147868070;Right=chr3:147873094-147873332
chr3	CG	SV	147872587	147877855	39	.	.	ID=1638;Type=complex;Left=chr3:147872587-147873094-;Right=chr3:147877576-147877855-;Distance=4761;DiscordantMatePairAlignments=39;LeftRepeat=L1PA16:LINE:L1;RightRepeat=THE1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	147872587	147873094	39	-	.	ID=1638;Type=complex;Left=chr3:147872587-147873094;Right=chr3:147877576-147877855
chr3	CG	SV	147877576	147877855	39	-	.	ID=1638;Type=complex;Left=chr3:147872587-147873094;Right=chr3:147877576-147877855
chr3	CG	SV	150446060	150452952	31	.	.	ID=3560;Type=deletion;Left=chr3:150446060-150446368+;Right=chr3:150452398-150452952+;Distance=6338;DiscordantMatePairAlignments=31;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr3	CG	SV	150446060	150446368	31	+	.	ID=3560;Type=deletion;Left=chr3:150446060-150446368;Right=chr3:150452398-150452952
chr3	CG	SV	150452398	150452952	31	+	.	ID=3560;Type=deletion;Left=chr3:150446060-150446368;Right=chr3:150452398-150452952
chr3	CG	SV	150751166	150753332	54	.	.	ID=3559;Type=deletion;Left=chr3:150751166-150751545+;Right=chr3:150752841-150753332+;Distance=1675;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=;LeftGenes=NM_001168278:-;NM_001168280:-;NM_015472:-;RightGenes=NM_001168278:-;NM_001168280:-;NM_015472:-;XRef=rs67654479 (chr3:150751161-150752836);Frequency=0.35
chr3	CG	SV	150751166	150751545	54	+	.	ID=3559;Type=deletion;Left=chr3:150751166-150751545;Right=chr3:150752841-150753332
chr3	CG	SV	150752841	150753332	54	+	.	ID=3559;Type=deletion;Left=chr3:150751166-150751545;Right=chr3:150752841-150753332
chr3	CG	SV	153794414	153796281	64	.	.	ID=3558;Type=deletion;Left=chr3:153794414-153794929+;Right=chr3:153795846-153796281+;Distance=1432;DiscordantMatePairAlignments=64;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67110903 (chr3:153794413-153795845);Frequency=1.00
chr3	CG	SV	153794414	153794929	64	+	.	ID=3558;Type=deletion;Left=chr3:153794414-153794929;Right=chr3:153795846-153796281
chr3	CG	SV	153795846	153796281	64	+	.	ID=3558;Type=deletion;Left=chr3:153794414-153794929;Right=chr3:153795846-153796281
chr3	CG	SV	164008436	164030335	106	.	.	ID=4596;Type=complex;Left=chr3:164008436-164008862+;Right=chr3:164029772-164030335-;Distance=21899;DiscordantMatePairAlignments=106;LeftRepeat=MIR:SINE:MIR;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr3	CG	SV	164008436	164008862	106	+	.	ID=4596;Type=complex;Left=chr3:164008436-164008862;Right=chr3:164029772-164030335
chr3	CG	SV	164029772	164030335	106	+	.	ID=4596;Type=complex;Left=chr3:164008436-164008862;Right=chr3:164029772-164030335
chr3	CG	SV	164027554	164030611	34	.	.	ID=1024;Type=complex;Left=chr3:164027554-164028056-;Right=chr3:164030352-164030611+;Distance=2296;DiscordantMatePairAlignments=34;LeftRepeat=THE1C:LTR:MaLR;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr3	CG	SV	164027554	164028056	34	-	.	ID=1024;Type=complex;Left=chr3:164027554-164028056;Right=chr3:164030352-164030611
chr3	CG	SV	164030352	164030611	34	-	.	ID=1024;Type=complex;Left=chr3:164027554-164028056;Right=chr3:164030352-164030611
chr3	CG	SV	164247596	164252310	42	.	.	ID=3554;Type=deletion;Left=chr3:164247596-164247918+;Right=chr3:164251779-164252310+;Distance=4183;DiscordantMatePairAlignments=42;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Tandem TG;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67657160 (chr3:164247595-164251776);Frequency=0.88
chr3	CG	SV	164247596	164247918	42	+	.	ID=3554;Type=deletion;Left=chr3:164247596-164247918;Right=chr3:164251779-164252310
chr3	CG	SV	164251779	164252310	42	+	.	ID=3554;Type=deletion;Left=chr3:164247596-164247918;Right=chr3:164251779-164252310
chr3	CG	SV	174289321	174645894	19	.	.	ID=1636;Type=tandem-duplication;Left=chr3:174289321-174289849-;Right=chr3:174645777-174645894-;Distance=356045;DiscordantMatePairAlignments=19;LeftRepeat=;RightRepeat=Tandem period 16;LeftGenes=NM_031955:-;RightGenes=NM_014932:+;XRef=;Frequency=0.00
chr3	CG	SV	174289321	174289849	19	-	.	ID=1636;Type=tandem-duplication;Left=chr3:174289321-174289849;Right=chr3:174645777-174645894
chr3	CG	SV	174645777	174645894	19	-	.	ID=1636;Type=tandem-duplication;Left=chr3:174289321-174289849;Right=chr3:174645777-174645894
chr3	CG	SV	174377004	174379027	34	.	.	ID=3553;Type=deletion;Left=chr3:174377004-174377374+;Right=chr3:174378585-174379027+;Distance=1581;DiscordantMatePairAlignments=34;LeftRepeat=MLT1F2:LTR:MaLR;RightRepeat=Kanga1:DNA:Tc2;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	174377004	174377374	34	+	.	ID=3553;Type=deletion;Left=chr3:174377004-174377374;Right=chr3:174378585-174379027
chr3	CG	SV	174378585	174379027	34	+	.	ID=3553;Type=deletion;Left=chr3:174377004-174377374;Right=chr3:174378585-174379027
chr3	CG	SV	188063727	188068448	40	.	.	ID=3548;Type=deletion;Left=chr3:188063727-188064249+;Right=chr3:188067996-188068448+;Distance=4269;DiscordantMatePairAlignments=40;LeftRepeat=Tandem TCCCTC;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66463946 (chr3:188063709-188067978);Frequency=1.00
chr3	CG	SV	188063727	188064249	40	+	.	ID=3548;Type=deletion;Left=chr3:188063727-188064249;Right=chr3:188067996-188068448
chr3	CG	SV	188067996	188068448	40	+	.	ID=3548;Type=deletion;Left=chr3:188063727-188064249;Right=chr3:188067996-188068448
chr3	CG	SV	194227049	194228012	43	.	.	ID=3544;Type=deletion;Left=chr3:194227049-194227314+;Right=chr3:194227589-194228012+;Distance=540;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66924869 (chr3:194227047-194227587);Frequency=0.59
chr3	CG	SV	194227049	194227314	43	+	.	ID=3544;Type=deletion;Left=chr3:194227049-194227314;Right=chr3:194227589-194228012
chr3	CG	SV	194227589	194228012	43	+	.	ID=3544;Type=deletion;Left=chr3:194227049-194227314;Right=chr3:194227589-194228012
chr3	CG	SV	194358026	194368604	43	.	.	ID=3543;Type=deletion;Left=chr3:194358026-194358436+;Right=chr3:194368102-194368604+;Distance=10076;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	194358026	194358436	43	+	.	ID=3543;Type=deletion;Left=chr3:194358026-194358436;Right=chr3:194368102-194368604
chr3	CG	SV	194368102	194368604	43	+	.	ID=3543;Type=deletion;Left=chr3:194358026-194358436;Right=chr3:194368102-194368604
chr3	CG	SV	196024583	196027723	102	.	.	ID=3541;Type=distal-duplication;Left=chr3:196024583-196025072+;Right=chr3:196027549-196027723+;Distance=2966;DiscordantMatePairAlignments=102;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72236752 (chr3:196024579-196027545);Frequency=0.76
chr3	CG	SV	196024583	196025072	102	+	.	ID=3541;Type=distal-duplication;Left=chr3:196024583-196025072;Right=chr3:196027549-196027723
chr3	CG	SV	196027549	196027723	102	+	.	ID=3541;Type=distal-duplication;Left=chr3:196024583-196025072;Right=chr3:196027549-196027723
chr3	CG	SV	196023933	196027718	130	.	.	ID=1635;Type=distal-duplication;Left=chr3:196023933-196024598-;Right=chr3:196027542-196027718-;Distance=3120;DiscordantMatePairAlignments=130;LeftRepeat=;RightRepeat=Tandem period 120;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr3	CG	SV	196023933	196024598	130	-	.	ID=1635;Type=distal-duplication;Left=chr3:196023933-196024598;Right=chr3:196027542-196027718
chr3	CG	SV	196027542	196027718	130	-	.	ID=1635;Type=distal-duplication;Left=chr3:196023933-196024598;Right=chr3:196027542-196027718
chr4	CG	SV	3581929	3582776	30	.	.	ID=3536;Type=deletion;Left=chr4:3581929-3582593+;Right=chr4:3582457-3582776+;Distance=528;DiscordantMatePairAlignments=30;LeftRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Self chain;Tandem CATC;Tandem period 19;Tandem period 27;Tandem period 35;Tandem period 53;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Self chain;Tandem CATC;Tandem period 19;Tandem period 27;Tandem period 53;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	3581929	3582593	30	+	.	ID=3536;Type=deletion;Left=chr4:3581929-3582593;Right=chr4:3582457-3582776
chr4	CG	SV	3582457	3582776	30	+	.	ID=3536;Type=deletion;Left=chr4:3581929-3582593;Right=chr4:3582457-3582776
chr4	CG	SV	3583174	3588590	37	.	.	ID=3535;Type=deletion;Left=chr4:3583174-3583629+;Right=chr4:3588419-3588590+;Distance=5245;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	3583174	3583629	37	+	.	ID=3535;Type=deletion;Left=chr4:3583174-3583629;Right=chr4:3588419-3588590
chr4	CG	SV	3588419	3588590	37	+	.	ID=3535;Type=deletion;Left=chr4:3583174-3583629;Right=chr4:3588419-3588590
chr4	CG	SV	10001528	10011686	96	.	.	ID=3532;Type=deletion;Left=chr4:10001528-10001941+;Right=chr4:10011279-10011686+;Distance=9751;DiscordantMatePairAlignments=96;LeftRepeat=L1MA3:LINE:L1;RightRepeat=L1MEe:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr4	CG	SV	10001528	10001941	96	+	.	ID=3532;Type=deletion;Left=chr4:10001528-10001941;Right=chr4:10011279-10011686
chr4	CG	SV	10011279	10011686	96	+	.	ID=3532;Type=deletion;Left=chr4:10001528-10001941;Right=chr4:10011279-10011686
chr4	CG	SV	11174213	11175148	23	.	.	ID=1629;Type=tandem-duplication;Left=chr4:11174213-11174549-;Right=chr4:11174737-11175148-;Distance=599;DiscordantMatePairAlignments=23;LeftRepeat=L1MA7:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	11174213	11174549	23	-	.	ID=1629;Type=tandem-duplication;Left=chr4:11174213-11174549;Right=chr4:11174737-11175148
chr4	CG	SV	11174737	11175148	23	-	.	ID=1629;Type=tandem-duplication;Left=chr4:11174213-11174549;Right=chr4:11174737-11175148
chr4	CG	SV	18688558	18695153	107	.	.	ID=3531;Type=deletion;Left=chr4:18688558-18689009+;Right=chr4:18694658-18695153+;Distance=6100;DiscordantMatePairAlignments=107;LeftRepeat=L1ME1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67968762 (chr4:18688563-18694663);Frequency=0.71
chr4	CG	SV	18688558	18689009	107	+	.	ID=3531;Type=deletion;Left=chr4:18688558-18689009;Right=chr4:18694658-18695153
chr4	CG	SV	18694658	18695153	107	+	.	ID=3531;Type=deletion;Left=chr4:18688558-18689009;Right=chr4:18694658-18695153
chr4	CG	SV	33523565	33525159	23	.	.	ID=3528;Type=deletion;Left=chr4:33523565-33523813+;Right=chr4:33524623-33525159+;Distance=1058;DiscordantMatePairAlignments=23;LeftRepeat=MER11C:LTR:ERVK;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66649474 (chr4:33523565-33524622);Frequency=1.00
chr4	CG	SV	33523565	33523813	23	+	.	ID=3528;Type=deletion;Left=chr4:33523565-33523813;Right=chr4:33524623-33525159
chr4	CG	SV	33524623	33525159	23	+	.	ID=3528;Type=deletion;Left=chr4:33523565-33523813;Right=chr4:33524623-33525159
chr4	CG	SV	38004538	38005200	12	.	.	ID=3526;Type=deletion;Left=chr4:38004538-38005063+;Right=chr4:38004874-38005200+;Distance=336;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	38004538	38005063	12	+	.	ID=3526;Type=deletion;Left=chr4:38004538-38005063;Right=chr4:38004874-38005200
chr4	CG	SV	38004874	38005200	12	+	.	ID=3526;Type=deletion;Left=chr4:38004538-38005063;Right=chr4:38004874-38005200
chr4	CG	SV	57782107	57782914	19	.	.	ID=3519;Type=deletion;Left=chr4:57782107-57782629+;Right=chr4:57782505-57782914+;Distance=398;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10525076 (chr4:57782093-57782491);Frequency=1.00
chr4	CG	SV	57782107	57782629	19	+	.	ID=3519;Type=deletion;Left=chr4:57782107-57782629;Right=chr4:57782505-57782914
chr4	CG	SV	57782505	57782914	19	+	.	ID=3519;Type=deletion;Left=chr4:57782107-57782629;Right=chr4:57782505-57782914
chr4	CG	SV	57842787	57843628	13	.	.	ID=3518;Type=deletion;Left=chr4:57842787-57843134+;Right=chr4:57843113-57843628+;Distance=326;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71180070 (chr4:57842787-57843113);Frequency=0.82
chr4	CG	SV	57842787	57843134	13	+	.	ID=3518;Type=deletion;Left=chr4:57842787-57843134;Right=chr4:57843113-57843628
chr4	CG	SV	57843113	57843628	13	+	.	ID=3518;Type=deletion;Left=chr4:57842787-57843134;Right=chr4:57843113-57843628
chr4	CG	SV	59627160	59633602	58	.	.	ID=3517;Type=deletion;Left=chr4:59627160-59627581+;Right=chr4:59633202-59633602+;Distance=6042;DiscordantMatePairAlignments=58;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72460317 (chr4:59627160-59633202);Frequency=0.94
chr4	CG	SV	59627160	59627581	58	+	.	ID=3517;Type=deletion;Left=chr4:59627160-59627581;Right=chr4:59633202-59633602
chr4	CG	SV	59633202	59633602	58	+	.	ID=3517;Type=deletion;Left=chr4:59627160-59627581;Right=chr4:59633202-59633602
chr4	CG	SV	62427955	62479079	30	.	.	ID=3515;Type=deletion;Left=chr4:62427955-62428428+;Right=chr4:62478659-62479079+;Distance=50704;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=;LeftGenes=NM_015236:+;RightGenes=NM_015236:+;XRef=;Frequency=0.00
chr4	CG	SV	62427955	62428428	30	+	.	ID=3515;Type=deletion;Left=chr4:62427955-62428428;Right=chr4:62478659-62479079
chr4	CG	SV	62478659	62479079	30	+	.	ID=3515;Type=deletion;Left=chr4:62427955-62428428;Right=chr4:62478659-62479079
chr4	CG	SV	79488153	79494694	165	.	.	ID=3513;Type=deletion;Left=chr4:79488153-79488684+;Right=chr4:79494228-79494694+;Distance=6075;DiscordantMatePairAlignments=165;LeftRepeat=;RightRepeat=;LeftGenes=NM_001166133:+;NM_025074:+;RightGenes=NM_001166133:+;NM_025074:+;XRef=;Frequency=1.00
chr4	CG	SV	79488153	79488684	165	+	.	ID=3513;Type=deletion;Left=chr4:79488153-79488684;Right=chr4:79494228-79494694
chr4	CG	SV	79494228	79494694	165	+	.	ID=3513;Type=deletion;Left=chr4:79488153-79488684;Right=chr4:79494228-79494694
chr4	CG	SV	86879789	86880473	21	.	.	ID=3509;Type=deletion;Left=chr4:86879789-86880367+;Right=chr4:86880111-86880473+;Distance=322;DiscordantMatePairAlignments=21;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=NM_001025616:+;RightGenes=NM_001025616:+;XRef=rs10705059 (chr4:86879793-86880115);Frequency=1.00
chr4	CG	SV	86879789	86880367	21	+	.	ID=3509;Type=deletion;Left=chr4:86879789-86880367;Right=chr4:86880111-86880473
chr4	CG	SV	86880111	86880473	21	+	.	ID=3509;Type=deletion;Left=chr4:86879789-86880367;Right=chr4:86880111-86880473
chr4	CG	SV	88702914	88705933	37	.	.	ID=3508;Type=deletion;Left=chr4:88702914-88703400+;Right=chr4:88705343-88705933+;Distance=2429;DiscordantMatePairAlignments=37;LeftRepeat=;RightRepeat=L1ME3B:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66992231 (chr4:88702907-88705336);Frequency=0.65
chr4	CG	SV	88702914	88703400	37	+	.	ID=3508;Type=deletion;Left=chr4:88702914-88703400;Right=chr4:88705343-88705933
chr4	CG	SV	88705343	88705933	37	+	.	ID=3508;Type=deletion;Left=chr4:88702914-88703400;Right=chr4:88705343-88705933
chr4	CG	SV	91815819	91822340	25	.	.	ID=3506;Type=deletion;Left=chr4:91815819-91816234+;Right=chr4:91821942-91822340+;Distance=6123;DiscordantMatePairAlignments=25;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001145065:+;NM_207491:+;RightGenes=NM_001145065:+;NM_207491:+;XRef=rs68154073 (chr4:91815806-91821931);Frequency=1.00
chr4	CG	SV	91815819	91816234	25	+	.	ID=3506;Type=deletion;Left=chr4:91815819-91816234;Right=chr4:91821942-91822340
chr4	CG	SV	91821942	91822340	25	+	.	ID=3506;Type=deletion;Left=chr4:91815819-91816234;Right=chr4:91821942-91822340
chr4	CG	SV	94778477	94785084	50	.	.	ID=3502;Type=deletion;Left=chr4:94778477-94778790+;Right=chr4:94784528-94785084+;Distance=6051;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=;LeftGenes=NM_001510:+;RightGenes=NM_001510:+;XRef=rs67415856 (chr4:94778477-94784528);Frequency=0.41
chr4	CG	SV	94778477	94778790	50	+	.	ID=3502;Type=deletion;Left=chr4:94778477-94778790;Right=chr4:94784528-94785084
chr4	CG	SV	94784528	94785084	50	+	.	ID=3502;Type=deletion;Left=chr4:94778477-94778790;Right=chr4:94784528-94785084
chr4	CG	SV	100242071	100242758	12	.	.	ID=3500;Type=deletion;Left=chr4:100242071-100242497+;Right=chr4:100242405-100242758+;Distance=334;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	100242071	100242497	12	+	.	ID=3500;Type=deletion;Left=chr4:100242071-100242497;Right=chr4:100242405-100242758
chr4	CG	SV	100242405	100242758	12	+	.	ID=3500;Type=deletion;Left=chr4:100242071-100242497;Right=chr4:100242405-100242758
chr4	CG	SV	105113495	105114555	45	.	.	ID=3497;Type=deletion;Left=chr4:105113495-105114033+;Right=chr4:105114129-105114555+;Distance=634;DiscordantMatePairAlignments=45;LeftRepeat=HERV4_I:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71662133 (chr4:105113495-105114126);Frequency=0.94
chr4	CG	SV	105113495	105114033	45	+	.	ID=3497;Type=deletion;Left=chr4:105113495-105114033;Right=chr4:105114129-105114555
chr4	CG	SV	105114129	105114555	45	+	.	ID=3497;Type=deletion;Left=chr4:105113495-105114033;Right=chr4:105114129-105114555
chr4	CG	SV	108347270	108351731	90	.	.	ID=3496;Type=deletion;Left=chr4:108347270-108347813+;Right=chr4:108351176-108351731+;Distance=3906;DiscordantMatePairAlignments=90;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66829191 (chr4:108347277-108351183);Frequency=1.00
chr4	CG	SV	108347270	108347813	90	+	.	ID=3496;Type=deletion;Left=chr4:108347270-108347813;Right=chr4:108351176-108351731
chr4	CG	SV	108351176	108351731	90	+	.	ID=3496;Type=deletion;Left=chr4:108347270-108347813;Right=chr4:108351176-108351731
chr4	CG	SV	114205344	114206219	15	.	.	ID=3494;Type=deletion;Left=chr4:114205344-114205758+;Right=chr4:114205839-114206219+;Distance=495;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem period 33;RightRepeat=Self chain;Tandem period 33;LeftGenes=NM_001127493:+;NM_001148:+;NM_020977:+;RightGenes=NM_001127493:+;NM_001148:+;NM_020977:+;XRef=rs72075860 (chr4:114205429-114205858);Frequency=0.94
chr4	CG	SV	114205344	114205758	15	+	.	ID=3494;Type=deletion;Left=chr4:114205344-114205758;Right=chr4:114205839-114206219
chr4	CG	SV	114205839	114206219	15	+	.	ID=3494;Type=deletion;Left=chr4:114205344-114205758;Right=chr4:114205839-114206219
chr4	CG	SV	125163017	125165065	24	.	.	ID=3490;Type=deletion;Left=chr4:125163017-125163497+;Right=chr4:125164651-125165065+;Distance=1634;DiscordantMatePairAlignments=24;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68108143 (chr4:125163017-125164651);Frequency=0.53
chr4	CG	SV	125163017	125163497	24	+	.	ID=3490;Type=deletion;Left=chr4:125163017-125163497;Right=chr4:125164651-125165065
chr4	CG	SV	125164651	125165065	24	+	.	ID=3490;Type=deletion;Left=chr4:125163017-125163497;Right=chr4:125164651-125165065
chr4	CG	SV	130435957	130439471	218	.	.	ID=3489;Type=deletion;Left=chr4:130435957-130436540+;Right=chr4:130438940-130439471+;Distance=2983;DiscordantMatePairAlignments=218;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr4	CG	SV	130435957	130436540	218	+	.	ID=3489;Type=deletion;Left=chr4:130435957-130436540;Right=chr4:130438940-130439471
chr4	CG	SV	130438940	130439471	218	+	.	ID=3489;Type=deletion;Left=chr4:130435957-130436540;Right=chr4:130438940-130439471
chr4	CG	SV	135652479	135655520	42	.	.	ID=3487;Type=deletion;Left=chr4:135652479-135652744+;Right=chr4:135655151-135655520+;Distance=2672;DiscordantMatePairAlignments=42;LeftRepeat=Arthur1:DNA:Tip100;RightRepeat=L1MA9:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72144499 (chr4:135652457-135655151);Frequency=0.71
chr4	CG	SV	135652479	135652744	42	+	.	ID=3487;Type=deletion;Left=chr4:135652479-135652744;Right=chr4:135655151-135655520
chr4	CG	SV	135655151	135655520	42	+	.	ID=3487;Type=deletion;Left=chr4:135652479-135652744;Right=chr4:135655151-135655520
chr4	CG	SV	139185661	139187178	91	.	.	ID=3486;Type=deletion;Left=chr4:139185661-139186103+;Right=chr4:139186668-139187178+;Distance=1007;DiscordantMatePairAlignments=91;LeftRepeat=MER61D:LTR:ERV1;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66727003 (chr4:139185661-139186667);Frequency=0.59
chr4	CG	SV	139185661	139186103	91	+	.	ID=3486;Type=deletion;Left=chr4:139185661-139186103;Right=chr4:139186668-139187178
chr4	CG	SV	139186668	139187178	91	+	.	ID=3486;Type=deletion;Left=chr4:139185661-139186103;Right=chr4:139186668-139187178
chr4	CG	SV	142156420	142157824	65	.	.	ID=1021;Type=probable-inversion;Left=chr4:142156420-142156670-;Right=chr4:142157368-142157824+;Distance=698;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=;LeftGenes=NM_020724:-;RightGenes=NM_020724:-;XRef=;Frequency=0.00
chr4	CG	SV	142156420	142156670	65	-	.	ID=1021;Type=probable-inversion;Left=chr4:142156420-142156670;Right=chr4:142157368-142157824
chr4	CG	SV	142157368	142157824	65	-	.	ID=1021;Type=probable-inversion;Left=chr4:142156420-142156670;Right=chr4:142157368-142157824
chr4	CG	SV	146658263	146660386	41	.	.	ID=3485;Type=deletion;Left=chr4:146658263-146658595+;Right=chr4:146659907-146660386+;Distance=1644;DiscordantMatePairAlignments=41;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001003688:+;NM_005900:+;RightGenes=NM_001003688:+;NM_005900:+;XRef=rs67125785 (chr4:146658263-146659907);Frequency=0.59
chr4	CG	SV	146658263	146658595	41	+	.	ID=3485;Type=deletion;Left=chr4:146658263-146658595;Right=chr4:146659907-146660386
chr4	CG	SV	146659907	146660386	41	+	.	ID=3485;Type=deletion;Left=chr4:146658263-146658595;Right=chr4:146659907-146660386
chr4	CG	SV	152560161	152561541	173	.	.	ID=3484;Type=deletion;Left=chr4:152560161-152560739+;Right=chr4:152561008-152561541+;Distance=847;DiscordantMatePairAlignments=173;LeftRepeat=;RightRepeat=L1HS:LINE:L1;LeftGenes=NM_001109977:+;RightGenes=NM_001109977:+;XRef=rs72214776 (chr4:152560155-152561002);Frequency=0.94
chr4	CG	SV	152560161	152560739	173	+	.	ID=3484;Type=deletion;Left=chr4:152560161-152560739;Right=chr4:152561008-152561541
chr4	CG	SV	152561008	152561541	173	+	.	ID=3484;Type=deletion;Left=chr4:152560161-152560739;Right=chr4:152561008-152561541
chr4	CG	SV	153315131	153316233	15	.	.	ID=3483;Type=deletion;Left=chr4:153315131-153315590+;Right=chr4:153315730-153316233+;Distance=599;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr4	CG	SV	153315131	153315590	15	+	.	ID=3483;Type=deletion;Left=chr4:153315131-153315590;Right=chr4:153315730-153316233
chr4	CG	SV	153315730	153316233	15	+	.	ID=3483;Type=deletion;Left=chr4:153315131-153315590;Right=chr4:153315730-153316233
chr4	CG	SV	166222125	166224830	24	.	.	ID=3482;Type=deletion;Left=chr4:166222125-166222563+;Right=chr4:166224563-166224830+;Distance=2438;DiscordantMatePairAlignments=24;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_001100389:-;RightGenes=NM_001100389:-;XRef=rs71937308 (chr4:166222054-166224492);Frequency=1.00
chr4	CG	SV	166222125	166222563	24	+	.	ID=3482;Type=deletion;Left=chr4:166222125-166222563;Right=chr4:166224563-166224830
chr4	CG	SV	166224563	166224830	24	+	.	ID=3482;Type=deletion;Left=chr4:166222125-166222563;Right=chr4:166224563-166224830
chr4	CG	SV	167223766	167224738	37	.	.	ID=3481;Type=deletion;Left=chr4:167223766-167223970+;Right=chr4:167224369-167224738+;Distance=603;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;RightRepeat=L1MA8:LINE:L1;Self chain;LeftGenes=NM_012464:+;RightGenes=NM_012464:+;XRef=rs72050237 (chr4:167223766-167224362);Frequency=0.76
chr4	CG	SV	167223766	167223970	37	+	.	ID=3481;Type=deletion;Left=chr4:167223766-167223970;Right=chr4:167224369-167224738
chr4	CG	SV	167224369	167224738	37	+	.	ID=3481;Type=deletion;Left=chr4:167223766-167223970;Right=chr4:167224369-167224738
chr4	CG	SV	167913623	167920111	18	.	.	ID=3480;Type=deletion;Left=chr4:167913623-167914113+;Right=chr4:167919658-167920111+;Distance=6035;DiscordantMatePairAlignments=18;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001040159:-;NM_016950:-;RightGenes=NM_001040159:-;NM_016950:-;XRef=rs71929678 (chr4:167913623-167919658);Frequency=0.88
chr4	CG	SV	167913623	167914113	18	+	.	ID=3480;Type=deletion;Left=chr4:167913623-167914113;Right=chr4:167919658-167920111
chr4	CG	SV	167919658	167920111	18	+	.	ID=3480;Type=deletion;Left=chr4:167913623-167914113;Right=chr4:167919658-167920111
chr4	CG	SV	173661607	173670520	19	.	.	ID=3478;Type=deletion;Left=chr4:173661607-173661937+;Right=chr4:173670095-173670520+;Distance=8488;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;RightRepeat=L1PB1:LINE:L1;LeftGenes=NM_001034845:+;RightGenes=NM_001034845:+;XRef=rs67651552 (chr4:173661607-173670094);Frequency=0.94
chr4	CG	SV	173661607	173661937	19	+	.	ID=3478;Type=deletion;Left=chr4:173661607-173661937;Right=chr4:173670095-173670520
chr4	CG	SV	173670095	173670520	19	+	.	ID=3478;Type=deletion;Left=chr4:173661607-173661937;Right=chr4:173670095-173670520
chr4	CG	SV	175741511	175742298	29	.	.	ID=3477;Type=deletion;Left=chr4:175741511-175742013+;Right=chr4:175741934-175742298+;Distance=423;DiscordantMatePairAlignments=29;LeftRepeat=AluSc:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72035570 (chr4:175741516-175741934);Frequency=0.10
chr4	CG	SV	175741511	175742013	29	+	.	ID=3477;Type=deletion;Left=chr4:175741511-175742013;Right=chr4:175741934-175742298
chr4	CG	SV	175741934	175742298	29	+	.	ID=3477;Type=deletion;Left=chr4:175741511-175742013;Right=chr4:175741934-175742298
chr4	CG	SV	182113788	182115750	144	.	.	ID=3472;Type=deletion;Left=chr4:182113788-182114433+;Right=chr4:182115290-182115750+;Distance=1502;DiscordantMatePairAlignments=144;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67900735 (chr4:182113796-182115298);Frequency=1.00
chr4	CG	SV	182113788	182114433	144	+	.	ID=3472;Type=deletion;Left=chr4:182113788-182114433;Right=chr4:182115290-182115750
chr4	CG	SV	182115290	182115750	144	+	.	ID=3472;Type=deletion;Left=chr4:182113788-182114433;Right=chr4:182115290-182115750
chr4	CG	SV	184892827	184896427	20	.	.	ID=3470;Type=deletion;Left=chr4:184892827-184893197+;Right=chr4:184895979-184896427+;Distance=3152;DiscordantMatePairAlignments=20;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71162502 (chr4:184892827-184895979);Frequency=0.35
chr4	CG	SV	184892827	184893197	20	+	.	ID=3470;Type=deletion;Left=chr4:184892827-184893197;Right=chr4:184895979-184896427
chr4	CG	SV	184895979	184896427	20	+	.	ID=3470;Type=deletion;Left=chr4:184892827-184893197;Right=chr4:184895979-184896427
chr4	CG	SV	184911427	184913019	22	.	.	ID=3469;Type=deletion;Left=chr4:184911427-184911900+;Right=chr4:184912887-184913019+;Distance=1460;DiscordantMatePairAlignments=22;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr4	CG	SV	184911427	184911900	22	+	.	ID=3469;Type=deletion;Left=chr4:184911427-184911900;Right=chr4:184912887-184913019
chr4	CG	SV	184912887	184913019	22	+	.	ID=3469;Type=deletion;Left=chr4:184911427-184911900;Right=chr4:184912887-184913019
chr4	CG	SV	186678631	186681558	110	.	.	ID=3466;Type=deletion;Left=chr4:186678631-186679055+;Right=chr4:186681069-186681558+;Distance=2438;DiscordantMatePairAlignments=110;LeftRepeat=;RightRepeat=;LeftGenes=NM_001114107:-;NM_014476:-;RightGenes=NM_001114107:-;NM_014476:-;XRef=;Frequency=0.94
chr4	CG	SV	186678631	186679055	110	+	.	ID=3466;Type=deletion;Left=chr4:186678631-186679055;Right=chr4:186681069-186681558
chr4	CG	SV	186681069	186681558	110	+	.	ID=3466;Type=deletion;Left=chr4:186678631-186679055;Right=chr4:186681069-186681558
chr4	CG	SV	190295008	190301629	34	.	.	ID=3462;Type=deletion;Left=chr4:190295008-190295438+;Right=chr4:190301282-190301629+;Distance=6274;DiscordantMatePairAlignments=34;LeftRepeat=L1P1:LINE:L1;RightRepeat=THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67851464 (chr4:190294992-190301266);Frequency=0.94
chr4	CG	SV	190295008	190295438	34	+	.	ID=3462;Type=deletion;Left=chr4:190295008-190295438;Right=chr4:190301282-190301629
chr4	CG	SV	190301282	190301629	34	+	.	ID=3462;Type=deletion;Left=chr4:190295008-190295438;Right=chr4:190301282-190301629
chr4	CG	SV	190342554	190343563	78	.	.	ID=3461;Type=deletion;Left=chr4:190342554-190343046+;Right=chr4:190343307-190343563+;Distance=753;DiscordantMatePairAlignments=78;LeftRepeat=Self chain;Tandem period 161;Tandem period 54;RightRepeat=Self chain;Tandem period 161;Tandem period 54;LeftGenes=;RightGenes=;XRef=rs66954860 (chr4:190342578-190343277);Frequency=1.00
chr4	CG	SV	190342554	190343046	78	+	.	ID=3461;Type=deletion;Left=chr4:190342554-190343046;Right=chr4:190343307-190343563
chr4	CG	SV	190343307	190343563	78	+	.	ID=3461;Type=deletion;Left=chr4:190342554-190343046;Right=chr4:190343307-190343563
chr4	CG	SV	190715580	190716027	30	.	.	ID=1614;Type=tandem-duplication;Left=chr4:190715580-190715805-;Right=chr4:190715935-190716027-;Distance=222;DiscordantMatePairAlignments=30;LeftRepeat=SegDup;Tandem period 16;RightRepeat=SegDup;Tandem period 16;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190715580	190715805	30	-	.	ID=1614;Type=tandem-duplication;Left=chr4:190715580-190715805;Right=chr4:190715935-190716027
chr4	CG	SV	190715935	190716027	30	-	.	ID=1614;Type=tandem-duplication;Left=chr4:190715580-190715805;Right=chr4:190715935-190716027
chr4	CG	SV	190772499	190775543	13	.	.	ID=3458;Type=deletion;Left=chr4:190772499-190772624+;Right=chr4:190775357-190775543+;Distance=2858;DiscordantMatePairAlignments=13;LeftRepeat=SegDup;Self chain;RightRepeat=LTR12C:LTR:ERV1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190772499	190772624	13	+	.	ID=3458;Type=deletion;Left=chr4:190772499-190772624;Right=chr4:190775357-190775543
chr4	CG	SV	190775357	190775543	13	+	.	ID=3458;Type=deletion;Left=chr4:190772499-190772624;Right=chr4:190775357-190775543
chr4	CG	SV	190822807	190850110	187	.	.	ID=4592;Type=probable-inversion;Left=chr4:190822807-190823293+;Right=chr4:190849584-190850110-;Distance=27303;DiscordantMatePairAlignments=187;LeftRepeat=Self chain;RightRepeat=LTR12C:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190822807	190823293	187	+	.	ID=4592;Type=probable-inversion;Left=chr4:190822807-190823293;Right=chr4:190849584-190850110
chr4	CG	SV	190849584	190850110	187	+	.	ID=4592;Type=probable-inversion;Left=chr4:190822807-190823293;Right=chr4:190849584-190850110
chr4	CG	SV	190847757	190848132	22	+	.	ID=3384;Type=interchromosomal;Left=chr4:190847757-190848132+;Right=chr7:92057620-92058046+;Distance=;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001040057:-;NM_152789:-;XRef=;Frequency=0.00
chr7	CG	SV	92057620	92058046	22	+	.	ID=3384;Type=interchromosomal;Left=chr4:190847757-190848132+;Right=chr7:92057620-92058046+;Distance=;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001040057:-;NM_152789:-;XRef=;Frequency=0.00
chr4	CG	SV	190893487	190894735	17	.	.	ID=3454;Type=deletion;Left=chr4:190893487-190893897+;Right=chr4:190894527-190894735+;Distance=1040;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem period 105;Tandem period 35;Tandem period 70;RightRepeat=Self chain;Tandem period 105;Tandem period 35;Tandem period 70;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190893487	190893897	17	+	.	ID=3454;Type=deletion;Left=chr4:190893487-190893897;Right=chr4:190894527-190894735
chr4	CG	SV	190894527	190894735	17	+	.	ID=3454;Type=deletion;Left=chr4:190893487-190893897;Right=chr4:190894527-190894735
chr4	CG	SV	190899926	190901200	70	.	.	ID=3453;Type=deletion;Left=chr4:190899926-190900370+;Right=chr4:190900721-190901200+;Distance=795;DiscordantMatePairAlignments=70;LeftRepeat=L1PBa:LINE:L1;Self chain;RightRepeat=L1PBa:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190899926	190900370	70	+	.	ID=3453;Type=deletion;Left=chr4:190899926-190900370;Right=chr4:190900721-190901200
chr4	CG	SV	190900721	190901200	70	+	.	ID=3453;Type=deletion;Left=chr4:190899926-190900370;Right=chr4:190900721-190901200
chr4	CG	SV	191035650	191038031	14	.	.	ID=3452;Type=deletion;Left=chr4:191035650-191035910+;Right=chr4:191037595-191038031+;Distance=1945;DiscordantMatePairAlignments=14;LeftRepeat=L1PA4:LINE:L1;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	191035650	191035910	14	+	.	ID=3452;Type=deletion;Left=chr4:191035650-191035910;Right=chr4:191037595-191038031
chr4	CG	SV	191037595	191038031	14	+	.	ID=3452;Type=deletion;Left=chr4:191035650-191035910;Right=chr4:191037595-191038031
chr5	CG	SV	540117	541135	67	.	.	ID=3450;Type=deletion;Left=chr5:540117-540645+;Right=chr5:540676-541135+;Distance=559;DiscordantMatePairAlignments=67;LeftRepeat=(CACCG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 15;Tandem period 38;Tandem period 68;RightRepeat=(CACCG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 15;Tandem period 68;LeftGenes=NM_004174:-;RightGenes=NM_004174:-;XRef=rs67969321 (chr5:540079-540691);Frequency=0.88
chr5	CG	SV	540117	540645	67	+	.	ID=3450;Type=deletion;Left=chr5:540117-540645;Right=chr5:540676-541135
chr5	CG	SV	540676	541135	67	+	.	ID=3450;Type=deletion;Left=chr5:540117-540645;Right=chr5:540676-541135
chr5	CG	SV	721126	721815	11	.	.	ID=3449;Type=deletion;Left=chr5:721126-721556+;Right=chr5:721608-721815+;Distance=482;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 289;Tandem period 48;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=NM_007030:-;RightGenes=NM_007030:-;XRef=rs70955282 (chr5:720962-721299);Frequency=0.82
chr5	CG	SV	721126	721556	11	+	.	ID=3449;Type=deletion;Left=chr5:721126-721556;Right=chr5:721608-721815
chr5	CG	SV	721608	721815	11	+	.	ID=3449;Type=deletion;Left=chr5:721126-721556;Right=chr5:721608-721815
chr5	CG	SV	1231294	1234178	51	.	.	ID=3446;Type=deletion;Left=chr5:1231294-1231882+;Right=chr5:1233733-1234178+;Distance=2439;DiscordantMatePairAlignments=51;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72222740 (chr5:1231293-1233732);Frequency=0.71
chr5	CG	SV	1231294	1231882	51	+	.	ID=3446;Type=deletion;Left=chr5:1231294-1231882;Right=chr5:1233733-1234178
chr5	CG	SV	1233733	1234178	51	+	.	ID=3446;Type=deletion;Left=chr5:1231294-1231882;Right=chr5:1233733-1234178
chr5	CG	SV	1291493	1292200	10	.	.	ID=3445;Type=deletion;Left=chr5:1291493-1292116+;Right=chr5:1291791-1292200+;Distance=298;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 112;Tandem period 149;Tandem period 37;RightRepeat=Self chain;LeftGenes=NM_182632:+;RightGenes=NM_182632:+;XRef=rs72365262 (chr5:1291456-1291791);Frequency=0.53
chr5	CG	SV	1291493	1292116	10	+	.	ID=3445;Type=deletion;Left=chr5:1291493-1292116;Right=chr5:1291791-1292200
chr5	CG	SV	1291791	1292200	10	+	.	ID=3445;Type=deletion;Left=chr5:1291493-1292116;Right=chr5:1291791-1292200
chr5	CG	SV	1716891	1717694	21	.	.	ID=3444;Type=deletion;Left=chr5:1716891-1717429+;Right=chr5:1717347-1717694+;Distance=456;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;Tandem period 38;LeftGenes=;RightGenes=;XRef=rs66494513 (chr5:1716815-1717347);Frequency=0.82
chr5	CG	SV	1716891	1717429	21	+	.	ID=3444;Type=deletion;Left=chr5:1716891-1717429;Right=chr5:1717347-1717694
chr5	CG	SV	1717347	1717694	21	+	.	ID=3444;Type=deletion;Left=chr5:1716891-1717429;Right=chr5:1717347-1717694
chr5	CG	SV	1977591	1978759	153	.	.	ID=3443;Type=deletion;Left=chr5:1977591-1978120+;Right=chr5:1978203-1978759+;Distance=612;DiscordantMatePairAlignments=153;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72120772 (chr5:1977590-1978202);Frequency=0.94
chr5	CG	SV	1977591	1978120	153	+	.	ID=3443;Type=deletion;Left=chr5:1977591-1978120;Right=chr5:1978203-1978759
chr5	CG	SV	1978203	1978759	153	+	.	ID=3443;Type=deletion;Left=chr5:1977591-1978120;Right=chr5:1978203-1978759
chr5	CG	SV	2021403	2025117	86	.	.	ID=3441;Type=deletion;Left=chr5:2021403-2021973+;Right=chr5:2024591-2025117+;Distance=3188;DiscordantMatePairAlignments=86;LeftRepeat=;RightRepeat=L1HS:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71809671 (chr5:2021413-2024601);Frequency=1.00
chr5	CG	SV	2021403	2021973	86	+	.	ID=3441;Type=deletion;Left=chr5:2021403-2021973;Right=chr5:2024591-2025117
chr5	CG	SV	2024591	2025117	86	+	.	ID=3441;Type=deletion;Left=chr5:2021403-2021973;Right=chr5:2024591-2025117
chr5	CG	SV	2543122	2543588	22	.	.	ID=1610;Type=tandem-duplication;Left=chr5:2543122-2543308-;Right=chr5:2543321-2543588-;Distance=280;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;Tandem period 56;RightRepeat=Self chain;Tandem period 56;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr5	CG	SV	2543122	2543308	22	-	.	ID=1610;Type=tandem-duplication;Left=chr5:2543122-2543308;Right=chr5:2543321-2543588
chr5	CG	SV	2543321	2543588	22	-	.	ID=1610;Type=tandem-duplication;Left=chr5:2543122-2543308;Right=chr5:2543321-2543588
chr5	CG	SV	2915625	2916765	26	.	.	ID=3440;Type=deletion;Left=chr5:2915625-2915964+;Right=chr5:2916404-2916765+;Distance=779;DiscordantMatePairAlignments=26;LeftRepeat=(CCCCAG)n:Simple_repeat:Simple_repeat;Tandem AGCCAC;Tandem period 24;RightRepeat=(CCCCAG)n:Simple_repeat:Simple_repeat;Tandem AGCCAC;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr5	CG	SV	2915625	2915964	26	+	.	ID=3440;Type=deletion;Left=chr5:2915625-2915964;Right=chr5:2916404-2916765
chr5	CG	SV	2916404	2916765	26	+	.	ID=3440;Type=deletion;Left=chr5:2915625-2915964;Right=chr5:2916404-2916765
chr5	CG	SV	9464774	9465599	22	.	.	ID=3437;Type=deletion;Left=chr5:9464774-9465393+;Right=chr5:9465088-9465599+;Distance=314;DiscordantMatePairAlignments=22;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_003966:-;RightGenes=NM_003966:-;XRef=rs10530022 (chr5:9464760-9465074);Frequency=1.00
chr5	CG	SV	9464774	9465393	22	+	.	ID=3437;Type=deletion;Left=chr5:9464774-9465393;Right=chr5:9465088-9465599
chr5	CG	SV	9465088	9465599	22	+	.	ID=3437;Type=deletion;Left=chr5:9464774-9465393;Right=chr5:9465088-9465599
chr5	CG	SV	10326600	10328655	23	.	.	ID=3436;Type=deletion;Left=chr5:10326600-10327197+;Right=chr5:10328444-10328655+;Distance=1844;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72183657 (chr5:10326200-10328044);Frequency=1.00
chr5	CG	SV	10326600	10327197	23	+	.	ID=3436;Type=deletion;Left=chr5:10326600-10327197;Right=chr5:10328444-10328655
chr5	CG	SV	10328444	10328655	23	+	.	ID=3436;Type=deletion;Left=chr5:10326600-10327197;Right=chr5:10328444-10328655
chr5	CG	SV	10627956	10628833	24	.	.	ID=3435;Type=deletion;Left=chr5:10627956-10628263+;Right=chr5:10628301-10628833+;Distance=345;DiscordantMatePairAlignments=24;LeftRepeat=AluJo:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_001164440:+;RightGenes=NM_001164440:+;XRef=rs10523499 (chr5:10627956-10628292);Frequency=1.00
chr5	CG	SV	10627956	10628263	24	+	.	ID=3435;Type=deletion;Left=chr5:10627956-10628263;Right=chr5:10628301-10628833
chr5	CG	SV	10628301	10628833	24	+	.	ID=3435;Type=deletion;Left=chr5:10627956-10628263;Right=chr5:10628301-10628833
chr5	CG	SV	10692095	10693738	245	.	.	ID=3434;Type=deletion;Left=chr5:10692095-10692591+;Right=chr5:10693273-10693738+;Distance=1178;DiscordantMatePairAlignments=245;LeftRepeat=Self chain;Tandem period 31;RightRepeat=Self chain;Tandem period 31;LeftGenes=NM_001164440:+;RightGenes=NM_001164440:+;XRef=;Frequency=0.59
chr5	CG	SV	10692095	10692591	245	+	.	ID=3434;Type=deletion;Left=chr5:10692095-10692591;Right=chr5:10693273-10693738
chr5	CG	SV	10693273	10693738	245	+	.	ID=3434;Type=deletion;Left=chr5:10692095-10692591;Right=chr5:10693273-10693738
chr5	CG	SV	12864019	12873953	85	.	.	ID=3432;Type=deletion;Left=chr5:12864019-12864375+;Right=chr5:12873525-12873953+;Distance=9506;DiscordantMatePairAlignments=85;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66987566 (chr5:12864019-12873525);Frequency=0.88
chr5	CG	SV	12864019	12864375	85	+	.	ID=3432;Type=deletion;Left=chr5:12864019-12864375;Right=chr5:12873525-12873953
chr5	CG	SV	12873525	12873953	85	+	.	ID=3432;Type=deletion;Left=chr5:12864019-12864375;Right=chr5:12873525-12873953
chr5	CG	SV	13469596	13476391	367	.	.	ID=3431;Type=deletion;Left=chr5:13469596-13470118+;Right=chr5:13475858-13476391+;Distance=6262;DiscordantMatePairAlignments=367;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr5	CG	SV	13469596	13470118	367	+	.	ID=3431;Type=deletion;Left=chr5:13469596-13470118;Right=chr5:13475858-13476391
chr5	CG	SV	13475858	13476391	367	+	.	ID=3431;Type=deletion;Left=chr5:13469596-13470118;Right=chr5:13475858-13476391
chr5	CG	SV	13948092	13949053	11	.	.	ID=3430;Type=deletion;Left=chr5:13948092-13948653+;Right=chr5:13948389-13949053+;Distance=297;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_001369:-;RightGenes=NM_001369:-;XRef=rs70948002 (chr5:13948092-13948389);Frequency=1.00
chr5	CG	SV	13948092	13948653	11	+	.	ID=3430;Type=deletion;Left=chr5:13948092-13948653;Right=chr5:13948389-13949053
chr5	CG	SV	13948389	13949053	11	+	.	ID=3430;Type=deletion;Left=chr5:13948092-13948653;Right=chr5:13948389-13949053
chr5	CG	SV	17559749	17652967	13	.	.	ID=3429;Type=deletion;Left=chr5:17559749-17560321+;Right=chr5:17652831-17652967+;Distance=93082;DiscordantMatePairAlignments=13;LeftRepeat=AluJb:SINE:Alu;SegDup;Self chain;RightRepeat=AluJb:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr5	CG	SV	17559749	17560321	13	+	.	ID=3429;Type=deletion;Left=chr5:17559749-17560321;Right=chr5:17652831-17652967
chr5	CG	SV	17652831	17652967	13	+	.	ID=3429;Type=deletion;Left=chr5:17559749-17560321;Right=chr5:17652831-17652967
chr5	CG	SV	29105074	29105382	27	.	.	ID=4591;Type=probable-inversion;Left=chr5:29105074-29105456+;Right=chr5:29105092-29105382-;Distance=308;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=THE1-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr5	CG	SV	29105074	29105456	27	+	.	ID=4591;Type=probable-inversion;Left=chr5:29105074-29105456;Right=chr5:29105092-29105382
chr5	CG	SV	29105092	29105382	27	+	.	ID=4591;Type=probable-inversion;Left=chr5:29105074-29105456;Right=chr5:29105092-29105382
chr5	CG	SV	35226907	35227798	13	.	.	ID=3421;Type=deletion;Left=chr5:35226907-35227280+;Right=chr5:35227244-35227798+;Distance=337;DiscordantMatePairAlignments=13;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_000949:-;RightGenes=NM_000949:-;XRef=rs34282720 (chr5:35226907-35227244);Frequency=0.71
chr5	CG	SV	35226907	35227280	13	+	.	ID=3421;Type=deletion;Left=chr5:35226907-35227280;Right=chr5:35227244-35227798
chr5	CG	SV	35227244	35227798	13	+	.	ID=3421;Type=deletion;Left=chr5:35226907-35227280;Right=chr5:35227244-35227798
chr5	CG	SV	35744220	35744589	17	.	.	ID=1607;Type=tandem-duplication;Left=chr5:35744220-35744391-;Right=chr5:35744408-35744589-;Distance=198;DiscordantMatePairAlignments=17;LeftRepeat=(CCA)n:Simple_repeat:Simple_repeat;Tandem ACC;Tandem period 12;RightRepeat=;LeftGenes=NM_024867:+;RightGenes=NM_024867:+;XRef=;Frequency=0.71
chr5	CG	SV	35744220	35744391	17	-	.	ID=1607;Type=tandem-duplication;Left=chr5:35744220-35744391;Right=chr5:35744408-35744589
chr5	CG	SV	35744408	35744589	17	-	.	ID=1607;Type=tandem-duplication;Left=chr5:35744220-35744391;Right=chr5:35744408-35744589
chr5	CG	SV	42201702	42203926	49	.	.	ID=3418;Type=deletion;Left=chr5:42201702-42202122+;Right=chr5:42203544-42203926+;Distance=1842;DiscordantMatePairAlignments=49;LeftRepeat=L1HS:LINE:L1;RightRepeat=L1MEc:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72268069 (chr5:42201685-42203526);Frequency=0.82
chr5	CG	SV	42201702	42202122	49	+	.	ID=3418;Type=deletion;Left=chr5:42201702-42202122;Right=chr5:42203544-42203926
chr5	CG	SV	42203544	42203926	49	+	.	ID=3418;Type=deletion;Left=chr5:42201702-42202122;Right=chr5:42203544-42203926
chr5	CG	SV	52267545	52268541	11	.	.	ID=3415;Type=deletion;Left=chr5:52267545-52268055+;Right=chr5:52267878-52268541+;Distance=333;DiscordantMatePairAlignments=11;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_181501:+;RightGenes=NM_181501:+;XRef=rs35347024 (chr5:52267545-52267878);Frequency=1.00
chr5	CG	SV	52267545	52268055	11	+	.	ID=3415;Type=deletion;Left=chr5:52267545-52268055;Right=chr5:52267878-52268541
chr5	CG	SV	52267878	52268541	11	+	.	ID=3415;Type=deletion;Left=chr5:52267545-52268055;Right=chr5:52267878-52268541
chr5	CG	SV	53212698	53213622	11	.	.	ID=3414;Type=deletion;Left=chr5:53212698-53213128+;Right=chr5:53213003-53213622+;Distance=305;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66590352 (chr5:53212698-53213003);Frequency=1.00
chr5	CG	SV	53212698	53213128	11	+	.	ID=3414;Type=deletion;Left=chr5:53212698-53213128;Right=chr5:53213003-53213622
chr5	CG	SV	53213003	53213622	11	+	.	ID=3414;Type=deletion;Left=chr5:53212698-53213128;Right=chr5:53213003-53213622
chr5	CG	SV	57359235	57369941	76	.	.	ID=3412;Type=deletion;Left=chr5:57359235-57359738+;Right=chr5:57369537-57369941+;Distance=10302;DiscordantMatePairAlignments=76;LeftRepeat=;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr5	CG	SV	57359235	57359738	76	+	.	ID=3412;Type=deletion;Left=chr5:57359235-57359738;Right=chr5:57369537-57369941
chr5	CG	SV	57369537	57369941	76	+	.	ID=3412;Type=deletion;Left=chr5:57359235-57359738;Right=chr5:57369537-57369941
chr5	CG	SV	57715751	57722341	122	.	.	ID=3411;Type=deletion;Left=chr5:57715751-57716213+;Right=chr5:57721860-57722341+;Distance=6109;DiscordantMatePairAlignments=122;LeftRepeat=;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Tandem A;LeftGenes=;RightGenes=;XRef=rs67036290 (chr5:57715758-57721867);Frequency=1.00
chr5	CG	SV	57715751	57716213	122	+	.	ID=3411;Type=deletion;Left=chr5:57715751-57716213;Right=chr5:57721860-57722341
chr5	CG	SV	57721860	57722341	122	+	.	ID=3411;Type=deletion;Left=chr5:57715751-57716213;Right=chr5:57721860-57722341
chr5	CG	SV	60037466	60039979	152	.	.	ID=3410;Type=deletion;Left=chr5:60037466-60037978+;Right=chr5:60039427-60039979+;Distance=1961;DiscordantMatePairAlignments=152;LeftRepeat=MLT1E3:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67780732 (chr5:60037461-60039422);Frequency=0.88
chr5	CG	SV	60037466	60037978	152	+	.	ID=3410;Type=deletion;Left=chr5:60037466-60037978;Right=chr5:60039427-60039979
chr5	CG	SV	60039427	60039979	152	+	.	ID=3410;Type=deletion;Left=chr5:60037466-60037978;Right=chr5:60039427-60039979
chr5	CG	SV	65063855	65066620	126	.	.	ID=3409;Type=deletion;Left=chr5:65063855-65064341+;Right=chr5:65066152-65066620+;Distance=2297;DiscordantMatePairAlignments=126;LeftRepeat=SegDup;Self chain;RightRepeat=;LeftGenes=NM_020726:+;RightGenes=NM_020726:+;XRef=rs71731346 (chr5:65063855-65066152);Frequency=0.65
chr5	CG	SV	65063855	65064341	126	+	.	ID=3409;Type=deletion;Left=chr5:65063855-65064341;Right=chr5:65066152-65066620
chr5	CG	SV	65066152	65066620	126	+	.	ID=3409;Type=deletion;Left=chr5:65063855-65064341;Right=chr5:65066152-65066620
chr5	CG	SV	66448761	67597981	28	.	.	ID=1605;Type=tandem-duplication;Left=chr5:66448761-66448938-;Right=chr5:67597529-67597981-;Distance=1149043;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_001164664:+;NM_015183:+;RightGenes=NM_181523:+;XRef=;Frequency=0.00
chr5	CG	SV	66448761	66448938	28	-	.	ID=1605;Type=tandem-duplication;Left=chr5:66448761-66448938;Right=chr5:67597529-67597981
chr5	CG	SV	67597529	67597981	28	-	.	ID=1605;Type=tandem-duplication;Left=chr5:66448761-66448938;Right=chr5:67597529-67597981
chr5	CG	SV	78145555	78148242	117	.	.	ID=3405;Type=deletion;Left=chr5:78145555-78145852+;Right=chr5:78147626-78148242+;Distance=2071;DiscordantMatePairAlignments=117;LeftRepeat=;RightRepeat=;LeftGenes=NM_000046:-;RightGenes=NM_000046:-;NM_198709:-;XRef=rs72356644 (chr5:78145555-78147626);Frequency=0.35
chr5	CG	SV	78145555	78145852	117	+	.	ID=3405;Type=deletion;Left=chr5:78145555-78145852;Right=chr5:78147626-78148242
chr5	CG	SV	78147626	78148242	117	+	.	ID=3405;Type=deletion;Left=chr5:78145555-78145852;Right=chr5:78147626-78148242
chr5	CG	SV	78313495	78314212	12	.	.	ID=3403;Type=deletion;Left=chr5:78313495-78314019+;Right=chr5:78313814-78314212+;Distance=319;DiscordantMatePairAlignments=12;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_000046:-;NM_198709:-;RightGenes=NM_000046:-;NM_198709:-;XRef=rs72309686 (chr5:78313482-78313801);Frequency=1.00
chr5	CG	SV	78313495	78314019	12	+	.	ID=3403;Type=deletion;Left=chr5:78313495-78314019;Right=chr5:78313814-78314212
chr5	CG	SV	78313814	78314212	12	+	.	ID=3403;Type=deletion;Left=chr5:78313495-78314019;Right=chr5:78313814-78314212
chr5	CG	SV	82941831	82942699	13	.	.	ID=3399;Type=deletion;Left=chr5:82941831-82942157+;Right=chr5:82942150-82942699+;Distance=319;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68156380 (chr5:82941814-82942133);Frequency=0.59
chr5	CG	SV	82941831	82942157	13	+	.	ID=3399;Type=deletion;Left=chr5:82941831-82942157;Right=chr5:82942150-82942699
chr5	CG	SV	82942150	82942699	13	+	.	ID=3399;Type=deletion;Left=chr5:82941831-82942157;Right=chr5:82942150-82942699
chr5	CG	SV	88067785	88068521	17	.	.	ID=3185;Type=deletion;Left=chr5:88067785-88068280+;Right=chr5:88068115-88068521+;Distance=330;DiscordantMatePairAlignments=17;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001131005:-;NM_002397:-;RightGenes=NM_001131005:-;NM_002397:-;XRef=rs66495905 (chr5:88067768-88068098);Frequency=1.00
chr5	CG	SV	88067785	88068280	17	+	.	ID=3185;Type=deletion;Left=chr5:88067785-88068280;Right=chr5:88068115-88068521
chr5	CG	SV	88068115	88068521	17	+	.	ID=3185;Type=deletion;Left=chr5:88067785-88068280;Right=chr5:88068115-88068521
chr5	CG	SV	90535531	90538386	173	.	.	ID=3182;Type=deletion;Left=chr5:90535531-90535958+;Right=chr5:90537854-90538386+;Distance=2323;DiscordantMatePairAlignments=173;LeftRepeat=L1ME2:LINE:L1;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=;RightGenes=;XRef=rs72404559 (chr5:90535531-90537854);Frequency=1.00
chr5	CG	SV	90535531	90535958	173	+	.	ID=3182;Type=deletion;Left=chr5:90535531-90535958;Right=chr5:90537854-90538386
chr5	CG	SV	90537854	90538386	173	+	.	ID=3182;Type=deletion;Left=chr5:90535531-90535958;Right=chr5:90537854-90538386
chr5	CG	SV	95369082	95369914	12	.	.	ID=3181;Type=deletion;Left=chr5:95369082-95369616+;Right=chr5:95369436-95369914+;Distance=354;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs34650770 (chr5:95369067-95369421);Frequency=1.00
chr5	CG	SV	95369082	95369616	12	+	.	ID=3181;Type=deletion;Left=chr5:95369082-95369616;Right=chr5:95369436-95369914
chr5	CG	SV	95369436	95369914	12	+	.	ID=3181;Type=deletion;Left=chr5:95369082-95369616;Right=chr5:95369436-95369914
chr5	CG	SV	106352650	106354854	168	.	.	ID=3178;Type=deletion;Left=chr5:106352650-106353254+;Right=chr5:106354342-106354854+;Distance=1692;DiscordantMatePairAlignments=168;LeftRepeat=LTR67:LTR:ERVL;RightRepeat=MER65A:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs72419952 (chr5:106352650-106354329);Frequency=0.65
chr5	CG	SV	106352650	106353254	168	+	.	ID=3178;Type=deletion;Left=chr5:106352650-106353254;Right=chr5:106354342-106354854
chr5	CG	SV	106354342	106354854	168	+	.	ID=3178;Type=deletion;Left=chr5:106352650-106353254;Right=chr5:106354342-106354854
chr5	CG	SV	115158366	115159182	16	.	.	ID=3176;Type=deletion;Left=chr5:115158366-115158746+;Right=chr5:115158715-115159182+;Distance=349;DiscordantMatePairAlignments=16;LeftRepeat=MER5A:DNA:MER1_type;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67420920 (chr5:115158366-115158715);Frequency=1.00
chr5	CG	SV	115158366	115158746	16	+	.	ID=3176;Type=deletion;Left=chr5:115158366-115158746;Right=chr5:115158715-115159182
chr5	CG	SV	115158715	115159182	16	+	.	ID=3176;Type=deletion;Left=chr5:115158366-115158746;Right=chr5:115158715-115159182
chr5	CG	SV	115374182	115378962	45	.	.	ID=1017;Type=probable-inversion;Left=chr5:115374182-115374637-;Right=chr5:115378804-115378962+;Distance=4167;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=;LeftGenes=NM_173800:+;RightGenes=NM_173800:+;XRef=;Frequency=0.71
chr5	CG	SV	115374182	115374637	45	-	.	ID=1017;Type=probable-inversion;Left=chr5:115374182-115374637;Right=chr5:115378804-115378962
chr5	CG	SV	115378804	115378962	45	-	.	ID=1017;Type=probable-inversion;Left=chr5:115374182-115374637;Right=chr5:115378804-115378962
chr5	CG	SV	126486277	126487258	135	.	.	ID=3168;Type=deletion;Left=chr5:126486277-126486739+;Right=chr5:126486715-126487258+;Distance=438;DiscordantMatePairAlignments=135;LeftRepeat=HERV16:LTR:ERVL;RightRepeat=HERV16:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs67355812 (chr5:126486277-126486715);Frequency=0.82
chr5	CG	SV	126486277	126486739	135	+	.	ID=3168;Type=deletion;Left=chr5:126486277-126486739;Right=chr5:126486715-126487258
chr5	CG	SV	126486715	126487258	135	+	.	ID=3168;Type=deletion;Left=chr5:126486277-126486739;Right=chr5:126486715-126487258
chr5	CG	SV	127200231	127201323	21	.	.	ID=3167;Type=deletion;Left=chr5:127200231-127200728+;Right=chr5:127201181-127201323+;Distance=950;DiscordantMatePairAlignments=21;LeftRepeat=THE1C-int:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr5	CG	SV	127200231	127200728	21	+	.	ID=3167;Type=deletion;Left=chr5:127200231-127200728;Right=chr5:127201181-127201323
chr5	CG	SV	127201181	127201323	21	+	.	ID=3167;Type=deletion;Left=chr5:127200231-127200728;Right=chr5:127201181-127201323
chr5	CG	SV	132946871	132953435	141	.	.	ID=3166;Type=deletion;Left=chr5:132946871-132947415+;Right=chr5:132952897-132953435+;Distance=6026;DiscordantMatePairAlignments=141;LeftRepeat=;RightRepeat=;LeftGenes=NM_015082:-;RightGenes=NM_015082:-;XRef=rs66911382 (chr5:132946863-132952889);Frequency=0.24
chr5	CG	SV	132946871	132947415	141	+	.	ID=3166;Type=deletion;Left=chr5:132946871-132947415;Right=chr5:132952897-132953435
chr5	CG	SV	132952897	132953435	141	+	.	ID=3166;Type=deletion;Left=chr5:132946871-132947415;Right=chr5:132952897-132953435
chr5	CG	SV	135143128	135149028	56	.	.	ID=3165;Type=deletion;Left=chr5:135143128-135143556+;Right=chr5:135148583-135149028+;Distance=5455;DiscordantMatePairAlignments=56;LeftRepeat=SATR1:Satellite:Satellite;Self chain;Tandem period 76;RightRepeat=SATR1:Satellite:Satellite;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr5	CG	SV	135143128	135143556	56	+	.	ID=3165;Type=deletion;Left=chr5:135143128-135143556;Right=chr5:135148583-135149028
chr5	CG	SV	135148583	135149028	56	+	.	ID=3165;Type=deletion;Left=chr5:135143128-135143556;Right=chr5:135148583-135149028
chr5	CG	SV	136882600	136884725	40	.	.	ID=3164;Type=deletion;Left=chr5:136882600-136882910+;Right=chr5:136884316-136884725+;Distance=1716;DiscordantMatePairAlignments=40;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg/x:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67020614 (chr5:136882557-136884273);Frequency=1.00
chr5	CG	SV	136882600	136882910	40	+	.	ID=3164;Type=deletion;Left=chr5:136882600-136882910;Right=chr5:136884316-136884725
chr5	CG	SV	136884316	136884725	40	+	.	ID=3164;Type=deletion;Left=chr5:136882600-136882910;Right=chr5:136884316-136884725
chr5	CG	SV	142841383	142846787	136	.	.	ID=3162;Type=deletion;Left=chr5:142841383-142841902+;Right=chr5:142846270-142846787+;Distance=4887;DiscordantMatePairAlignments=136;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr5	CG	SV	142841383	142841902	136	+	.	ID=3162;Type=deletion;Left=chr5:142841383-142841902;Right=chr5:142846270-142846787
chr5	CG	SV	142846270	142846787	136	+	.	ID=3162;Type=deletion;Left=chr5:142841383-142841902;Right=chr5:142846270-142846787
chr5	CG	SV	143492306	143495244	288	.	.	ID=1599;Type=distal-duplication;Left=chr5:143492306-143492681-;Right=chr5:143494773-143495244-;Distance=2563;DiscordantMatePairAlignments=288;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	143492306	143492681	288	-	.	ID=1599;Type=distal-duplication;Left=chr5:143492306-143492681;Right=chr5:143494773-143495244
chr5	CG	SV	143494773	143495244	288	-	.	ID=1599;Type=distal-duplication;Left=chr5:143492306-143492681;Right=chr5:143494773-143495244
chr5	CG	SV	143493060	143495725	136	.	.	ID=3161;Type=distal-duplication;Left=chr5:143493060-143493442+;Right=chr5:143495240-143495725+;Distance=2180;DiscordantMatePairAlignments=136;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	143493060	143493442	136	+	.	ID=3161;Type=distal-duplication;Left=chr5:143493060-143493442;Right=chr5:143495240-143495725
chr5	CG	SV	143495240	143495725	136	+	.	ID=3161;Type=distal-duplication;Left=chr5:143493060-143493442;Right=chr5:143495240-143495725
chr5	CG	SV	144852099	144853448	70	.	.	ID=3160;Type=deletion;Left=chr5:144852099-144852554+;Right=chr5:144853000-144853448+;Distance=901;DiscordantMatePairAlignments=70;LeftRepeat=L1MA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67005411 (chr5:144852097-144852998);Frequency=0.71
chr5	CG	SV	144852099	144852554	70	+	.	ID=3160;Type=deletion;Left=chr5:144852099-144852554;Right=chr5:144853000-144853448
chr5	CG	SV	144853000	144853448	70	+	.	ID=3160;Type=deletion;Left=chr5:144852099-144852554;Right=chr5:144853000-144853448
chr5	CG	SV	145747094	145764026	11	.	.	ID=3159;Type=deletion;Left=chr5:145747094-145747547+;Right=chr5:145763459-145764026+;Distance=16365;DiscordantMatePairAlignments=11;LeftRepeat=L2:LINE:L2;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	145747094	145747547	11	+	.	ID=3159;Type=deletion;Left=chr5:145747094-145747547;Right=chr5:145763459-145764026
chr5	CG	SV	145763459	145764026	11	+	.	ID=3159;Type=deletion;Left=chr5:145747094-145747547;Right=chr5:145763459-145764026
chr5	CG	SV	147533232	147534808	168	.	.	ID=4290;Type=complex;Left=chr5:147533232-147533690+;Right=chr5:147534440-147534808-;Distance=1576;DiscordantMatePairAlignments=168;LeftRepeat=;RightRepeat=;LeftGenes=NM_001001325:+;RightGenes=NM_001001325:+;XRef=;Frequency=1.00
chr5	CG	SV	147533232	147533690	168	+	.	ID=4290;Type=complex;Left=chr5:147533232-147533690;Right=chr5:147534440-147534808
chr5	CG	SV	147534440	147534808	168	+	.	ID=4290;Type=complex;Left=chr5:147533232-147533690;Right=chr5:147534440-147534808
chr5	CG	SV	147534063	147535348	63	.	.	ID=902;Type=complex;Left=chr5:147534063-147534432-;Right=chr5:147534971-147535348+;Distance=539;DiscordantMatePairAlignments=63;LeftRepeat=;RightRepeat=MIR3:SINE:MIR;LeftGenes=NM_001001325:+;RightGenes=NM_001001325:+;XRef=;Frequency=1.00
chr5	CG	SV	147534063	147534432	63	-	.	ID=902;Type=complex;Left=chr5:147534063-147534432;Right=chr5:147534971-147535348
chr5	CG	SV	147534971	147535348	63	-	.	ID=902;Type=complex;Left=chr5:147534063-147534432;Right=chr5:147534971-147535348
chr5	CG	SV	151436611	151443073	66	.	.	ID=3156;Type=deletion;Left=chr5:151436611-151437165+;Right=chr5:151442645-151443073+;Distance=6034;DiscordantMatePairAlignments=66;LeftRepeat=Tandem period 22;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67624953 (chr5:151436606-151442640);Frequency=0.88
chr5	CG	SV	151436611	151437165	66	+	.	ID=3156;Type=deletion;Left=chr5:151436611-151437165;Right=chr5:151442645-151443073
chr5	CG	SV	151442645	151443073	66	+	.	ID=3156;Type=deletion;Left=chr5:151436611-151437165;Right=chr5:151442645-151443073
chr5	CG	SV	171656426	171656962	11	.	.	ID=3154;Type=deletion;Left=chr5:171656426-171656982+;Right=chr5:171656746-171656962+;Distance=320;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 32;RightRepeat=MER57A-int:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr5	CG	SV	171656426	171656982	11	+	.	ID=3154;Type=deletion;Left=chr5:171656426-171656982;Right=chr5:171656746-171656962
chr5	CG	SV	171656746	171656962	11	+	.	ID=3154;Type=deletion;Left=chr5:171656426-171656982;Right=chr5:171656746-171656962
chr5	CG	SV	177944634	177945337	206	.	.	ID=1598;Type=tandem-duplication;Left=chr5:177944634-177944994-;Right=chr5:177945265-177945337-;Distance=343;DiscordantMatePairAlignments=206;LeftRepeat=Self chain;Tandem period 31;RightRepeat=Self chain;Tandem period 31;Tandem period 94;LeftGenes=NM_173465:-;RightGenes=NM_173465:-;XRef=;Frequency=1.00
chr5	CG	SV	177944634	177944994	206	-	.	ID=1598;Type=tandem-duplication;Left=chr5:177944634-177944994;Right=chr5:177945265-177945337
chr5	CG	SV	177945265	177945337	206	-	.	ID=1598;Type=tandem-duplication;Left=chr5:177944634-177944994;Right=chr5:177945265-177945337
chr5	CG	SV	178280974	178286145	82	.	.	ID=3150;Type=deletion;Left=chr5:178280974-178281427+;Right=chr5:178285807-178286145+;Distance=4833;DiscordantMatePairAlignments=82;LeftRepeat=L1MD2:LINE:L1;Self chain;RightRepeat=L1ME3B:LINE:L1;Self chain;LeftGenes=NM_030613:+;RightGenes=NM_030613:+;XRef=;Frequency=0.24
chr5	CG	SV	178280974	178281427	82	+	.	ID=3150;Type=deletion;Left=chr5:178280974-178281427;Right=chr5:178285807-178286145
chr5	CG	SV	178285807	178286145	82	+	.	ID=3150;Type=deletion;Left=chr5:178280974-178281427;Right=chr5:178285807-178286145
chr5	CG	SV	179867136	179867675	12	.	.	ID=1597;Type=tandem-duplication;Left=chr5:179867136-179867424-;Right=chr5:179867427-179867675-;Distance=251;DiscordantMatePairAlignments=12;LeftRepeat=MSTA:LTR:MaLR;RightRepeat=;LeftGenes=NM_015455:+;RightGenes=NM_015455:+;XRef=;Frequency=0.35
chr5	CG	SV	179867136	179867424	12	-	.	ID=1597;Type=tandem-duplication;Left=chr5:179867136-179867424;Right=chr5:179867427-179867675
chr5	CG	SV	179867427	179867675	12	-	.	ID=1597;Type=tandem-duplication;Left=chr5:179867136-179867424;Right=chr5:179867427-179867675
chr5	CG	SV	180501840	180503078	105	.	.	ID=3148;Type=deletion;Left=chr5:180501840-180502339+;Right=chr5:180502585-180503078+;Distance=745;DiscordantMatePairAlignments=105;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67335144 (chr5:180501840-180502585);Frequency=0.24
chr5	CG	SV	180501840	180502339	105	+	.	ID=3148;Type=deletion;Left=chr5:180501840-180502339;Right=chr5:180502585-180503078
chr5	CG	SV	180502585	180503078	105	+	.	ID=3148;Type=deletion;Left=chr5:180501840-180502339;Right=chr5:180502585-180503078
chr6	CG	SV	414136	415236	71	.	.	ID=3147;Type=deletion;Left=chr6:414136-414515+;Right=chr6:414663-415236+;Distance=527;DiscordantMatePairAlignments=71;LeftRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Tandem TCTGTC;Tandem period 10;Tandem period 36;RightRepeat=(TCTCC)n:Simple_repeat:Simple_repeat;Tandem CTCTC;Tandem period 30;Tandem period 36;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	414136	414515	71	+	.	ID=3147;Type=deletion;Left=chr6:414136-414515;Right=chr6:414663-415236
chr6	CG	SV	414663	415236	71	+	.	ID=3147;Type=deletion;Left=chr6:414136-414515;Right=chr6:414663-415236
chr6	CG	SV	802170	803208	53	.	.	ID=3146;Type=deletion;Left=chr6:802170-802359+;Right=chr6:802759-803208+;Distance=589;DiscordantMatePairAlignments=53;LeftRepeat=;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Tandem ATCC;Tandem period 52;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr6	CG	SV	802170	802359	53	+	.	ID=3146;Type=deletion;Left=chr6:802170-802359;Right=chr6:802759-803208
chr6	CG	SV	802759	803208	53	+	.	ID=3146;Type=deletion;Left=chr6:802170-802359;Right=chr6:802759-803208
chr6	CG	SV	4199863	4200752	30	.	.	ID=3142;Type=deletion;Left=chr6:4199863-4200351+;Right=chr6:4200352-4200752+;Distance=489;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;Tandem period 49;RightRepeat=MER20:DNA:MER1_type;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr6	CG	SV	4199863	4200351	30	+	.	ID=3142;Type=deletion;Left=chr6:4199863-4200351;Right=chr6:4200352-4200752
chr6	CG	SV	4200352	4200752	30	+	.	ID=3142;Type=deletion;Left=chr6:4199863-4200351;Right=chr6:4200352-4200752
chr6	CG	SV	4982248	4984685	160	.	.	ID=3141;Type=deletion;Left=chr6:4982248-4982781+;Right=chr6:4984185-4984685+;Distance=1937;DiscordantMatePairAlignments=160;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	4982248	4982781	160	+	.	ID=3141;Type=deletion;Left=chr6:4982248-4982781;Right=chr6:4984185-4984685
chr6	CG	SV	4984185	4984685	160	+	.	ID=3141;Type=deletion;Left=chr6:4982248-4982781;Right=chr6:4984185-4984685
chr6	CG	SV	11664092	11665013	14	.	.	ID=3138;Type=deletion;Left=chr6:11664092-11664482+;Right=chr6:11664412-11665013+;Distance=320;DiscordantMatePairAlignments=14;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1MCc:LINE:L1;LeftGenes=NM_001100829:+;RightGenes=NM_001100829:+;XRef=rs70976611 (chr6:11664092-11664412);Frequency=1.00
chr6	CG	SV	11664092	11664482	14	+	.	ID=3138;Type=deletion;Left=chr6:11664092-11664482;Right=chr6:11664412-11665013
chr6	CG	SV	11664412	11665013	14	+	.	ID=3138;Type=deletion;Left=chr6:11664092-11664482;Right=chr6:11664412-11665013
chr6	CG	SV	12540002	12540503	83	.	.	ID=4289;Type=probable-inversion;Left=chr6:12540002-12540493+;Right=chr6:12540139-12540503-;Distance=501;DiscordantMatePairAlignments=83;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr6	CG	SV	12540002	12540493	83	+	.	ID=4289;Type=probable-inversion;Left=chr6:12540002-12540493;Right=chr6:12540139-12540503
chr6	CG	SV	12540139	12540503	83	+	.	ID=4289;Type=probable-inversion;Left=chr6:12540002-12540493;Right=chr6:12540139-12540503
chr6	CG	SV	13990531	13992240	19	.	.	ID=3137;Type=deletion;Left=chr6:13990531-13991009+;Right=chr6:13991834-13992240+;Distance=1303;DiscordantMatePairAlignments=19;LeftRepeat=HERV17:LTR:ERV1;RightRepeat=LTR17:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr6	CG	SV	13990531	13991009	19	+	.	ID=3137;Type=deletion;Left=chr6:13990531-13991009;Right=chr6:13991834-13992240
chr6	CG	SV	13991834	13992240	19	+	.	ID=3137;Type=deletion;Left=chr6:13990531-13991009;Right=chr6:13991834-13992240
chr6	CG	SV	16992947	16994451	37	.	.	ID=3135;Type=deletion;Left=chr6:16992947-16993312+;Right=chr6:16994075-16994451+;Distance=1128;DiscordantMatePairAlignments=37;LeftRepeat=LTR49:LTR:ERV1;RightRepeat=MER4D1:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr6	CG	SV	16992947	16993312	37	+	.	ID=3135;Type=deletion;Left=chr6:16992947-16993312;Right=chr6:16994075-16994451
chr6	CG	SV	16994075	16994451	37	+	.	ID=3135;Type=deletion;Left=chr6:16992947-16993312;Right=chr6:16994075-16994451
chr6	CG	SV	18510069	18511323	149	.	.	ID=3134;Type=deletion;Left=chr6:18510069-18510704+;Right=chr6:18510849-18511323+;Distance=780;DiscordantMatePairAlignments=149;LeftRepeat=;RightRepeat=MER103:DNA:DNA;LeftGenes=NM_182757:+;RightGenes=NM_182757:+;XRef=rs67792192 (chr6:18510066-18510846);Frequency=0.94
chr6	CG	SV	18510069	18510704	149	+	.	ID=3134;Type=deletion;Left=chr6:18510069-18510704;Right=chr6:18510849-18511323
chr6	CG	SV	18510849	18511323	149	+	.	ID=3134;Type=deletion;Left=chr6:18510069-18510704;Right=chr6:18510849-18511323
chr6	CG	SV	19784583	19785945	19	.	.	ID=3133;Type=deletion;Left=chr6:19784583-19785159+;Right=chr6:19785628-19785945+;Distance=1045;DiscordantMatePairAlignments=19;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr6	CG	SV	19784583	19785159	19	+	.	ID=3133;Type=deletion;Left=chr6:19784583-19785159;Right=chr6:19785628-19785945
chr6	CG	SV	19785628	19785945	19	+	.	ID=3133;Type=deletion;Left=chr6:19784583-19785159;Right=chr6:19785628-19785945
chr6	CG	SV	23793974	23794863	14	.	.	ID=3131;Type=deletion;Left=chr6:23793974-23794446+;Right=chr6:23794303-23794863+;Distance=329;DiscordantMatePairAlignments=14;LeftRepeat=MSTD:LTR:MaLR;RightRepeat=MSTD:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr6	CG	SV	23793974	23794446	14	+	.	ID=3131;Type=deletion;Left=chr6:23793974-23794446;Right=chr6:23794303-23794863
chr6	CG	SV	23794303	23794863	14	+	.	ID=3131;Type=deletion;Left=chr6:23793974-23794446;Right=chr6:23794303-23794863
chr6	CG	SV	24919864	24926265	28	.	.	ID=3130;Type=deletion;Left=chr6:24919864-24920404+;Right=chr6:24925939-24926265+;Distance=6075;DiscordantMatePairAlignments=28;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_014722:-;RightGenes=NM_014722:-;XRef=rs72246104 (chr6:24919854-24925929);Frequency=0.94
chr6	CG	SV	24919864	24920404	28	+	.	ID=3130;Type=deletion;Left=chr6:24919864-24920404;Right=chr6:24925939-24926265
chr6	CG	SV	24925939	24926265	28	+	.	ID=3130;Type=deletion;Left=chr6:24919864-24920404;Right=chr6:24925939-24926265
chr6	CG	SV	32886730	32888079	118	.	.	ID=3128;Type=deletion;Left=chr6:32886730-32887182+;Right=chr6:32887796-32888079+;Distance=1066;DiscordantMatePairAlignments=118;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=L1MC5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs70976641 (chr6:32886732-32887798);Frequency=0.94
chr6	CG	SV	32886730	32887182	118	+	.	ID=3128;Type=deletion;Left=chr6:32886730-32887182;Right=chr6:32887796-32888079
chr6	CG	SV	32887796	32888079	118	+	.	ID=3128;Type=deletion;Left=chr6:32886730-32887182;Right=chr6:32887796-32888079
chr6	CG	SV	33201402	33202275	13	.	.	ID=3127;Type=deletion;Left=chr6:33201402-33201869+;Right=chr6:33201733-33202275+;Distance=331;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NR_001435:+;RightGenes=NR_001435:+;XRef=;Frequency=0.94
chr6	CG	SV	33201402	33201869	13	+	.	ID=3127;Type=deletion;Left=chr6:33201402-33201869;Right=chr6:33201733-33202275
chr6	CG	SV	33201733	33202275	13	+	.	ID=3127;Type=deletion;Left=chr6:33201402-33201869;Right=chr6:33201733-33202275
chr6	CG	SV	33691176	33694292	169	.	.	ID=3126;Type=deletion;Left=chr6:33691176-33691683+;Right=chr6:33693823-33694292+;Distance=2647;DiscordantMatePairAlignments=169;LeftRepeat=AluSq:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67749647 (chr6:33691175-33693822);Frequency=0.53
chr6	CG	SV	33691176	33691683	169	+	.	ID=3126;Type=deletion;Left=chr6:33691176-33691683;Right=chr6:33693823-33694292
chr6	CG	SV	33693823	33694292	169	+	.	ID=3126;Type=deletion;Left=chr6:33691176-33691683;Right=chr6:33693823-33694292
chr6	CG	SV	34807900	34809481	137	.	.	ID=3125;Type=deletion;Left=chr6:34807900-34808231+;Right=chr6:34809096-34809481+;Distance=1196;DiscordantMatePairAlignments=137;LeftRepeat=MIRb:SINE:MIR;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr6	CG	SV	34807900	34808231	137	+	.	ID=3125;Type=deletion;Left=chr6:34807900-34808231;Right=chr6:34809096-34809481
chr6	CG	SV	34809096	34809481	137	+	.	ID=3125;Type=deletion;Left=chr6:34807900-34808231;Right=chr6:34809096-34809481
chr6	CG	SV	35734412	35738152	33	.	.	ID=3124;Type=deletion;Left=chr6:35734412-35734724+;Right=chr6:35737724-35738152+;Distance=3312;DiscordantMatePairAlignments=33;LeftRepeat=L1M4:LINE:L1;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_001145775:-;NM_001145776:-;NM_001145777:-;NM_004117:-;RightGenes=NM_001145775:-;NM_001145776:-;NM_001145777:-;NM_004117:-;XRef=rs67674318 (chr6:35734410-35737722);Frequency=0.82
chr6	CG	SV	35734412	35734724	33	+	.	ID=3124;Type=deletion;Left=chr6:35734412-35734724;Right=chr6:35737724-35738152
chr6	CG	SV	35737724	35738152	33	+	.	ID=3124;Type=deletion;Left=chr6:35734412-35734724;Right=chr6:35737724-35738152
chr6	CG	SV	41972822	41973677	50	.	.	ID=3123;Type=deletion;Left=chr6:41972822-41973326+;Right=chr6:41973385-41973677+;Distance=563;DiscordantMatePairAlignments=50;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr6	CG	SV	41972822	41973326	50	+	.	ID=3123;Type=deletion;Left=chr6:41972822-41973326;Right=chr6:41973385-41973677
chr6	CG	SV	41973385	41973677	50	+	.	ID=3123;Type=deletion;Left=chr6:41972822-41973326;Right=chr6:41973385-41973677
chr6	CG	SV	51844070	51845179	83	.	.	ID=3119;Type=deletion;Left=chr6:51844070-51844484+;Right=chr6:51844765-51845179+;Distance=695;DiscordantMatePairAlignments=83;LeftRepeat=L1ME1:LINE:L1;RightRepeat=HAL1:LINE:L1;LeftGenes=NM_138694:-;NM_170724:-;RightGenes=NM_138694:-;NM_170724:-;XRef=rs66493455 (chr6:51844068-51844763);Frequency=0.88
chr6	CG	SV	51844070	51844484	83	+	.	ID=3119;Type=deletion;Left=chr6:51844070-51844484;Right=chr6:51844765-51845179
chr6	CG	SV	51844765	51845179	83	+	.	ID=3119;Type=deletion;Left=chr6:51844070-51844484;Right=chr6:51844765-51845179
chr6	CG	SV	54032466	54036668	54	.	.	ID=1592;Type=complex;Left=chr6:54032466-54032616-;Right=chr6:54036136-54036668-;Distance=4052;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=;LeftGenes=NM_138569:+;RightGenes=NM_138569:+;XRef=;Frequency=0.88
chr6	CG	SV	54032466	54032616	54	-	.	ID=1592;Type=complex;Left=chr6:54032466-54032616;Right=chr6:54036136-54036668
chr6	CG	SV	54036136	54036668	54	-	.	ID=1592;Type=complex;Left=chr6:54032466-54032616;Right=chr6:54036136-54036668
chr6	CG	SV	54036668	54043081	114	.	.	ID=3116;Type=complex;Left=chr6:54036668-54037081+;Right=chr6:54042787-54043081+;Distance=6119;DiscordantMatePairAlignments=114;LeftRepeat=;RightRepeat=;LeftGenes=NM_138569:+;RightGenes=NM_138569:+;XRef=;Frequency=0.88
chr6	CG	SV	54036668	54037081	114	+	.	ID=3116;Type=complex;Left=chr6:54036668-54037081;Right=chr6:54042787-54043081
chr6	CG	SV	54042787	54043081	114	+	.	ID=3116;Type=complex;Left=chr6:54036668-54037081;Right=chr6:54042787-54043081
chr6	CG	SV	57392870	57397618	74	.	.	ID=3113;Type=deletion;Left=chr6:57392870-57393386+;Right=chr6:57397315-57397618+;Distance=4445;DiscordantMatePairAlignments=74;LeftRepeat=;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs72273072 (chr6:57392872-57397315);Frequency=1.00
chr6	CG	SV	57392870	57393386	74	+	.	ID=3113;Type=deletion;Left=chr6:57392870-57393386;Right=chr6:57397315-57397618
chr6	CG	SV	57397315	57397618	74	+	.	ID=3113;Type=deletion;Left=chr6:57392870-57393386;Right=chr6:57397315-57397618
chr6	CG	SV	57405157	57409720	37	.	.	ID=3112;Type=deletion;Left=chr6:57405157-57405635+;Right=chr6:57409212-57409720+;Distance=4055;DiscordantMatePairAlignments=37;LeftRepeat=;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=;Frequency=1.00
chr6	CG	SV	57405157	57405635	37	+	.	ID=3112;Type=deletion;Left=chr6:57405157-57405635;Right=chr6:57409212-57409720
chr6	CG	SV	57409212	57409720	37	+	.	ID=3112;Type=deletion;Left=chr6:57405157-57405635;Right=chr6:57409212-57409720
chr6	CG	SV	57531029	57537581	263	.	.	ID=3111;Type=deletion;Left=chr6:57531029-57531560+;Right=chr6:57537081-57537581+;Distance=6052;DiscordantMatePairAlignments=263;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs68023605 (chr6:57531027-57537079);Frequency=1.00
chr6	CG	SV	57531029	57531560	263	+	.	ID=3111;Type=deletion;Left=chr6:57531029-57531560;Right=chr6:57537081-57537581
chr6	CG	SV	57537081	57537581	263	+	.	ID=3111;Type=deletion;Left=chr6:57531029-57531560;Right=chr6:57537081-57537581
chr6	CG	SV	57586119	57587308	141	.	.	ID=3110;Type=deletion;Left=chr6:57586119-57586597+;Right=chr6:57586826-57587308+;Distance=707;DiscordantMatePairAlignments=141;LeftRepeat=L1PA2:LINE:L1;RightRepeat=L1ME1:LINE:L1;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs72194487 (chr6:57586107-57586814);Frequency=1.00
chr6	CG	SV	57586119	57586597	141	+	.	ID=3110;Type=deletion;Left=chr6:57586119-57586597;Right=chr6:57586826-57587308
chr6	CG	SV	57586826	57587308	141	+	.	ID=3110;Type=deletion;Left=chr6:57586119-57586597;Right=chr6:57586826-57587308
chr6	CG	SV	64724975	64726784	60	.	.	ID=3100;Type=deletion;Left=chr6:64724975-64725382+;Right=chr6:64726314-64726784+;Distance=1339;DiscordantMatePairAlignments=60;LeftRepeat=MER82:DNA:MER2_type;Self chain;RightRepeat=MLT1A1:LTR:MaLR;LeftGenes=NM_001142800:-;RightGenes=NM_001142800:-;XRef=rs71765003 (chr6:64724970-64726309);Frequency=0.65
chr6	CG	SV	64724975	64725382	60	+	.	ID=3100;Type=deletion;Left=chr6:64724975-64725382;Right=chr6:64726314-64726784
chr6	CG	SV	64726314	64726784	60	+	.	ID=3100;Type=deletion;Left=chr6:64724975-64725382;Right=chr6:64726314-64726784
chr6	CG	SV	66316754	66319217	276	.	.	ID=3099;Type=deletion;Left=chr6:66316754-66317326+;Right=chr6:66318748-66319217+;Distance=1994;DiscordantMatePairAlignments=276;LeftRepeat=;RightRepeat=L1HS:LINE:L1;LeftGenes=NM_001142800:-;NM_001142801:-;NM_198283:-;RightGenes=NM_001142800:-;NM_001142801:-;NM_198283:-;XRef=rs67260056 (chr6:66316748-66318742);Frequency=1.00
chr6	CG	SV	66316754	66317326	276	+	.	ID=3099;Type=deletion;Left=chr6:66316754-66317326;Right=chr6:66318748-66319217
chr6	CG	SV	66318748	66319217	276	+	.	ID=3099;Type=deletion;Left=chr6:66316754-66317326;Right=chr6:66318748-66319217
chr6	CG	SV	68158252	68169310	61	.	.	ID=3098;Type=deletion;Left=chr6:68158252-68158705+;Right=chr6:68168887-68169310+;Distance=10635;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	68158252	68158705	61	+	.	ID=3098;Type=deletion;Left=chr6:68158252-68158705;Right=chr6:68168887-68169310
chr6	CG	SV	68168887	68169310	61	+	.	ID=3098;Type=deletion;Left=chr6:68158252-68158705;Right=chr6:68168887-68169310
chr6	CG	SV	69198890	69200219	205	.	.	ID=3097;Type=deletion;Left=chr6:69198890-69199385+;Right=chr6:69199833-69200219+;Distance=943;DiscordantMatePairAlignments=205;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr6	CG	SV	69198890	69199385	205	+	.	ID=3097;Type=deletion;Left=chr6:69198890-69199385;Right=chr6:69199833-69200219
chr6	CG	SV	69199833	69200219	205	+	.	ID=3097;Type=deletion;Left=chr6:69198890-69199385;Right=chr6:69199833-69200219
chr6	CG	SV	74648790	74659669	63	.	.	ID=3094;Type=deletion;Left=chr6:74648790-74649274+;Right=chr6:74659169-74659669+;Distance=10379;DiscordantMatePairAlignments=63;LeftRepeat=;RightRepeat=MSTA:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr6	CG	SV	74648790	74649274	63	+	.	ID=3094;Type=deletion;Left=chr6:74648790-74649274;Right=chr6:74659169-74659669
chr6	CG	SV	74659169	74659669	63	+	.	ID=3094;Type=deletion;Left=chr6:74648790-74649274;Right=chr6:74659169-74659669
chr6	CG	SV	74922168	74923773	87	.	.	ID=3093;Type=deletion;Left=chr6:74922168-74922710+;Right=chr6:74923319-74923773+;Distance=1151;DiscordantMatePairAlignments=87;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66965905 (chr6:74922153-74923304);Frequency=0.94
chr6	CG	SV	74922168	74922710	87	+	.	ID=3093;Type=deletion;Left=chr6:74922168-74922710;Right=chr6:74923319-74923773
chr6	CG	SV	74923319	74923773	87	+	.	ID=3093;Type=deletion;Left=chr6:74922168-74922710;Right=chr6:74923319-74923773
chr6	CG	SV	77154216	77159591	29	.	.	ID=3091;Type=deletion;Left=chr6:77154216-77154709+;Right=chr6:77159365-77159591+;Distance=5149;DiscordantMatePairAlignments=29;LeftRepeat=L1MA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67536422 (chr6:77154212-77159361);Frequency=0.71
chr6	CG	SV	77154216	77154709	29	+	.	ID=3091;Type=deletion;Left=chr6:77154216-77154709;Right=chr6:77159365-77159591
chr6	CG	SV	77159365	77159591	29	+	.	ID=3091;Type=deletion;Left=chr6:77154216-77154709;Right=chr6:77159365-77159591
chr6	CG	SV	78954324	83827559	29	.	.	ID=887;Type=probable-inversion;Left=chr6:78954324-78954861-;Right=chr6:83827142-83827559+;Distance=4872281;DiscordantMatePairAlignments=29;LeftRepeat=MSTA:LTR:MaLR;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=NM_198920:-;XRef=;Frequency=0.00
chr6	CG	SV	78954324	78954861	29	-	.	ID=887;Type=probable-inversion;Left=chr6:78954324-78954861;Right=chr6:83827142-83827559
chr6	CG	SV	83827142	83827559	29	-	.	ID=887;Type=probable-inversion;Left=chr6:78954324-78954861;Right=chr6:83827142-83827559
chr6	CG	SV	79954429	83600848	88	.	.	ID=3089;Type=deletion;Left=chr6:79954429-79954872+;Right=chr6:83600480-83600848+;Distance=3646051;DiscordantMatePairAlignments=88;LeftRepeat=MER20B:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	79954429	79954872	88	+	.	ID=3089;Type=deletion;Left=chr6:79954429-79954872;Right=chr6:83600480-83600848
chr6	CG	SV	83600480	83600848	88	+	.	ID=3089;Type=deletion;Left=chr6:79954429-79954872;Right=chr6:83600480-83600848
chr6	CG	SV	81112917	81115130	102	.	.	ID=3083;Type=deletion;Left=chr6:81112917-81113527+;Right=chr6:81114599-81115130+;Distance=1682;DiscordantMatePairAlignments=102;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	81112917	81113527	102	+	.	ID=3083;Type=deletion;Left=chr6:81112917-81113527;Right=chr6:81114599-81115130
chr6	CG	SV	81114599	81115130	102	+	.	ID=3083;Type=deletion;Left=chr6:81112917-81113527;Right=chr6:81114599-81115130
chr6	CG	SV	82671171	83350152	75	.	.	ID=888;Type=probable-inversion;Left=chr6:82671171-82671676-;Right=chr6:83349703-83350152+;Distance=678027;DiscordantMatePairAlignments=75;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	82671171	82671676	75	-	.	ID=888;Type=probable-inversion;Left=chr6:82671171-82671676;Right=chr6:83349703-83350152
chr6	CG	SV	83349703	83350152	75	-	.	ID=888;Type=probable-inversion;Left=chr6:82671171-82671676;Right=chr6:83349703-83350152
chr6	CG	SV	85374867	85381395	80	.	.	ID=3081;Type=deletion;Left=chr6:85374867-85375384+;Right=chr6:85380944-85381395+;Distance=6077;DiscordantMatePairAlignments=80;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67108388 (chr6:85374862-85380939);Frequency=1.00
chr6	CG	SV	85374867	85375384	80	+	.	ID=3081;Type=deletion;Left=chr6:85374867-85375384;Right=chr6:85380944-85381395
chr6	CG	SV	85380944	85381395	80	+	.	ID=3081;Type=deletion;Left=chr6:85374867-85375384;Right=chr6:85380944-85381395
chr6	CG	SV	88498298	88498712	31	+	.	ID=4252;Type=interchromosomal;Left=chr6:88498298-88498712+;Right=chr13:33190336-33190725-;Distance=;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=MLT1E2:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	33190336	33190725	31	+	.	ID=4252;Type=interchromosomal;Left=chr6:88498298-88498712+;Right=chr13:33190336-33190725-;Distance=;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=MLT1E2:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	89980347	89980667	28	.	.	ID=4279;Type=probable-inversion;Left=chr6:89980347-89980784+;Right=chr6:89980375-89980667-;Distance=320;DiscordantMatePairAlignments=28;LeftRepeat=L1M3:LINE:L1;RightRepeat=L1MA7:LINE:L1;LeftGenes=NM_002042:-;RightGenes=NM_002042:-;XRef=;Frequency=1.00
chr6	CG	SV	89980347	89980784	28	+	.	ID=4279;Type=probable-inversion;Left=chr6:89980347-89980784;Right=chr6:89980375-89980667
chr6	CG	SV	89980375	89980667	28	+	.	ID=4279;Type=probable-inversion;Left=chr6:89980347-89980784;Right=chr6:89980375-89980667
chr6	CG	SV	94797795	94798138	33	.	.	ID=4278;Type=probable-inversion;Left=chr6:94797795-94798171+;Right=chr6:94797793-94798138-;Distance=343;DiscordantMatePairAlignments=33;LeftRepeat=;RightRepeat=L1M1:LINE:L1;L1MA2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr6	CG	SV	94797795	94798171	33	+	.	ID=4278;Type=probable-inversion;Left=chr6:94797795-94798171;Right=chr6:94797793-94798138
chr6	CG	SV	94797793	94798138	33	+	.	ID=4278;Type=probable-inversion;Left=chr6:94797795-94798171;Right=chr6:94797793-94798138
chr6	CG	SV	95250045	95251486	29	.	.	ID=3078;Type=deletion;Left=chr6:95250045-95250415+;Right=chr6:95251059-95251486+;Distance=1014;DiscordantMatePairAlignments=29;LeftRepeat=L1M5:LINE:L1;RightRepeat=L1MEc:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67517600 (chr6:95250045-95251059);Frequency=0.76
chr6	CG	SV	95250045	95250415	29	+	.	ID=3078;Type=deletion;Left=chr6:95250045-95250415;Right=chr6:95251059-95251486
chr6	CG	SV	95251059	95251486	29	+	.	ID=3078;Type=deletion;Left=chr6:95250045-95250415;Right=chr6:95251059-95251486
chr6	CG	SV	100141222	100142563	127	.	.	ID=3076;Type=deletion;Left=chr6:100141222-100141728+;Right=chr6:100142042-100142563+;Distance=820;DiscordantMatePairAlignments=127;LeftRepeat=Tigger1:DNA:MER2_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67162792 (chr6:100141227-100142042);Frequency=1.00
chr6	CG	SV	100141222	100141728	127	+	.	ID=3076;Type=deletion;Left=chr6:100141222-100141728;Right=chr6:100142042-100142563
chr6	CG	SV	100142042	100142563	127	+	.	ID=3076;Type=deletion;Left=chr6:100141222-100141728;Right=chr6:100142042-100142563
chr6	CG	SV	103844157	103869995	18	.	.	ID=3075;Type=deletion;Left=chr6:103844157-103844352+;Right=chr6:103869582-103869995+;Distance=25425;DiscordantMatePairAlignments=18;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1PA7:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr6	CG	SV	103844157	103844352	18	+	.	ID=3075;Type=deletion;Left=chr6:103844157-103844352;Right=chr6:103869582-103869995
chr6	CG	SV	103869582	103869995	18	+	.	ID=3075;Type=deletion;Left=chr6:103844157-103844352;Right=chr6:103869582-103869995
chr6	CG	SV	108138035	108139551	61	.	.	ID=3071;Type=deletion;Left=chr6:108138035-108138415+;Right=chr6:108139095-108139551+;Distance=1060;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_198081:-;RightGenes=NM_198081:-;XRef=rs66561424 (chr6:108138035-108139079);Frequency=1.00
chr6	CG	SV	108138035	108138415	61	+	.	ID=3071;Type=deletion;Left=chr6:108138035-108138415;Right=chr6:108139095-108139551
chr6	CG	SV	108139095	108139551	61	+	.	ID=3071;Type=deletion;Left=chr6:108138035-108138415;Right=chr6:108139095-108139551
chr6	CG	SV	119303333	119304017	32	.	.	ID=1575;Type=tandem-duplication;Left=chr6:119303333-119303689-;Right=chr6:119303673-119304017-;Distance=328;DiscordantMatePairAlignments=32;LeftRepeat=L1M1:LINE:L1;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	119303333	119303689	32	-	.	ID=1575;Type=tandem-duplication;Left=chr6:119303333-119303689;Right=chr6:119303673-119304017
chr6	CG	SV	119303673	119304017	32	-	.	ID=1575;Type=tandem-duplication;Left=chr6:119303333-119303689;Right=chr6:119303673-119304017
chr6	CG	SV	125750460	125753448	51	.	.	ID=3068;Type=deletion;Left=chr6:125750460-125750873+;Right=chr6:125753063-125753448+;Distance=2603;DiscordantMatePairAlignments=51;LeftRepeat=L1MDa:LINE:L1;Tandem period 11;Tandem period 8;RightRepeat=L1MDa:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr6	CG	SV	125750460	125750873	51	+	.	ID=3068;Type=deletion;Left=chr6:125750460-125750873;Right=chr6:125753063-125753448
chr6	CG	SV	125753063	125753448	51	+	.	ID=3068;Type=deletion;Left=chr6:125750460-125750873;Right=chr6:125753063-125753448
chr6	CG	SV	129361212	129367666	238	.	.	ID=3067;Type=deletion;Left=chr6:129361212-129361784+;Right=chr6:129367271-129367666+;Distance=6059;DiscordantMatePairAlignments=238;LeftRepeat=;RightRepeat=;LeftGenes=NM_000426:+;NM_001079823:+;RightGenes=NM_000426:+;NM_001079823:+;XRef=rs71701877 (chr6:129361208-129367267);Frequency=0.41
chr6	CG	SV	129361212	129361784	238	+	.	ID=3067;Type=deletion;Left=chr6:129361212-129361784;Right=chr6:129367271-129367666
chr6	CG	SV	129367271	129367666	238	+	.	ID=3067;Type=deletion;Left=chr6:129361212-129361784;Right=chr6:129367271-129367666
chr6	CG	SV	131926365	131927179	29	.	.	ID=886;Type=probable-inversion;Left=chr6:131926365-131926491-;Right=chr6:131926654-131927179+;Distance=163;DiscordantMatePairAlignments=29;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	131926365	131926491	29	-	.	ID=886;Type=probable-inversion;Left=chr6:131926365-131926491;Right=chr6:131926654-131927179
chr6	CG	SV	131926654	131927179	29	-	.	ID=886;Type=probable-inversion;Left=chr6:131926365-131926491;Right=chr6:131926654-131927179
chr6	CG	SV	133383527	133390009	140	.	.	ID=3065;Type=deletion;Left=chr6:133383527-133384011+;Right=chr6:133389596-133390009+;Distance=6069;DiscordantMatePairAlignments=140;LeftRepeat=L1ME3B:LINE:L1;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70979714 (chr6:133383513-133389578);Frequency=0.82
chr6	CG	SV	133383527	133384011	140	+	.	ID=3065;Type=deletion;Left=chr6:133383527-133384011;Right=chr6:133389596-133390009
chr6	CG	SV	133389596	133390009	140	+	.	ID=3065;Type=deletion;Left=chr6:133383527-133384011;Right=chr6:133389596-133390009
chr6	CG	SV	133991366	133992655	50	.	.	ID=3064;Type=deletion;Left=chr6:133991366-133991805+;Right=chr6:133992232-133992655+;Distance=866;DiscordantMatePairAlignments=50;LeftRepeat=ERVL-C1:LTR:ERVL;RightRepeat=ERVL-C1:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr6	CG	SV	133991366	133991805	50	+	.	ID=3064;Type=deletion;Left=chr6:133991366-133991805;Right=chr6:133992232-133992655
chr6	CG	SV	133992232	133992655	50	+	.	ID=3064;Type=deletion;Left=chr6:133991366-133991805;Right=chr6:133992232-133992655
chr6	CG	SV	134310672	134311959	372	.	.	ID=3063;Type=deletion;Left=chr6:134310672-134311266+;Right=chr6:134311420-134311959+;Distance=748;DiscordantMatePairAlignments=372;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66832735 (chr6:134310669-134311417);Frequency=1.00
chr6	CG	SV	134310672	134311266	372	+	.	ID=3063;Type=deletion;Left=chr6:134310672-134311266;Right=chr6:134311420-134311959
chr6	CG	SV	134311420	134311959	372	+	.	ID=3063;Type=deletion;Left=chr6:134310672-134311266;Right=chr6:134311420-134311959
chr6	CG	SV	137355387	137356318	52	.	.	ID=3051;Type=deletion;Left=chr6:137355387-137355896+;Right=chr6:137355880-137356318+;Distance=493;DiscordantMatePairAlignments=52;LeftRepeat=L1MC:LINE:L1;RightRepeat=;LeftGenes=NR_027994:-;RightGenes=NR_027994:-;XRef=rs67777601 (chr6:137355386-137355879);Frequency=1.00
chr6	CG	SV	137355387	137355896	52	+	.	ID=3051;Type=deletion;Left=chr6:137355387-137355896;Right=chr6:137355880-137356318
chr6	CG	SV	137355880	137356318	52	+	.	ID=3051;Type=deletion;Left=chr6:137355387-137355896;Right=chr6:137355880-137356318
chr6	CG	SV	142530339	142534502	33	.	.	ID=3048;Type=deletion;Left=chr6:142530339-142530627+;Right=chr6:142534005-142534502+;Distance=3666;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;RightRepeat=AluSq:SINE:Alu;LeftGenes=NM_016485:+;RightGenes=NM_016485:+;XRef=;Frequency=0.00
chr6	CG	SV	142530339	142530627	33	+	.	ID=3048;Type=deletion;Left=chr6:142530339-142530627;Right=chr6:142534005-142534502
chr6	CG	SV	142534005	142534502	33	+	.	ID=3048;Type=deletion;Left=chr6:142530339-142530627;Right=chr6:142534005-142534502
chr6	CG	SV	153071683	153075920	31	.	.	ID=3047;Type=deletion;Left=chr6:153071683-153071922+;Right=chr6:153075501-153075920+;Distance=3818;DiscordantMatePairAlignments=31;LeftRepeat=L1MEb:LINE:L1;RightRepeat=L1MEb:LINE:L1;LeftGenes=NM_025107:+;RightGenes=NM_025107:+;XRef=;Frequency=1.00
chr6	CG	SV	153071683	153071922	31	+	.	ID=3047;Type=deletion;Left=chr6:153071683-153071922;Right=chr6:153075501-153075920
chr6	CG	SV	153075501	153075920	31	+	.	ID=3047;Type=deletion;Left=chr6:153071683-153071922;Right=chr6:153075501-153075920
chr6	CG	SV	158468258	158469660	172	.	.	ID=3044;Type=deletion;Left=chr6:158468258-158468888+;Right=chr6:158469058-158469660+;Distance=800;DiscordantMatePairAlignments=172;LeftRepeat=;RightRepeat=Tandem A;LeftGenes=NM_032861:-;RightGenes=NM_032861:-;XRef=rs67440464 (chr6:158468254-158469054);Frequency=1.00
chr6	CG	SV	158468258	158468888	172	+	.	ID=3044;Type=deletion;Left=chr6:158468258-158468888;Right=chr6:158469058-158469660
chr6	CG	SV	158469058	158469660	172	+	.	ID=3044;Type=deletion;Left=chr6:158468258-158468888;Right=chr6:158469058-158469660
chr6	CG	SV	159042099	159042530	22	.	.	ID=1573;Type=tandem-duplication;Left=chr6:159042099-159042293-;Right=chr6:159042423-159042530-;Distance=237;DiscordantMatePairAlignments=22;LeftRepeat=(AGGTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 26;RightRepeat=Self chain;Tandem period 67;LeftGenes=NM_001009991:+;RightGenes=NM_001009991:+;XRef=;Frequency=0.59
chr6	CG	SV	159042099	159042293	22	-	.	ID=1573;Type=tandem-duplication;Left=chr6:159042099-159042293;Right=chr6:159042423-159042530
chr6	CG	SV	159042423	159042530	22	-	.	ID=1573;Type=tandem-duplication;Left=chr6:159042099-159042293;Right=chr6:159042423-159042530
chr6	CG	SV	159046018	159046929	29	.	.	ID=3042;Type=deletion;Left=chr6:159046018-159046626+;Right=chr6:159046481-159046929+;Distance=463;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;Tandem period 51;LeftGenes=NM_001009991:+;RightGenes=NM_001009991:+;XRef=;Frequency=0.24
chr6	CG	SV	159046018	159046626	29	+	.	ID=3042;Type=deletion;Left=chr6:159046018-159046626;Right=chr6:159046481-159046929
chr6	CG	SV	159046481	159046929	29	+	.	ID=3042;Type=deletion;Left=chr6:159046018-159046626;Right=chr6:159046481-159046929
chr6	CG	SV	165644659	165652542	36	.	.	ID=3039;Type=deletion;Left=chr6:165644659-165645240+;Right=chr6:165652125-165652542+;Distance=7466;DiscordantMatePairAlignments=36;LeftRepeat=LTR46:LTR:ERV1;RightRepeat=L1PA8:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72196192 (chr6:165644656-165652122);Frequency=0.88
chr6	CG	SV	165644659	165645240	36	+	.	ID=3039;Type=deletion;Left=chr6:165644659-165645240;Right=chr6:165652125-165652542
chr6	CG	SV	165652125	165652542	36	+	.	ID=3039;Type=deletion;Left=chr6:165644659-165645240;Right=chr6:165652125-165652542
chr6	CG	SV	166173135	166173465	11	.	.	ID=1571;Type=tandem-duplication;Left=chr6:166173135-166173295-;Right=chr6:166173277-166173465-;Distance=170;DiscordantMatePairAlignments=11;LeftRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;(CCCCAA)n:Simple_repeat:Simple_repeat;Tandem period 12;Tandem period 18;RightRepeat=C-rich:Low_complexity:Low_complexity;Tandem CATCCC;Tandem period 12;Tandem period 18;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr6	CG	SV	166173135	166173295	11	-	.	ID=1571;Type=tandem-duplication;Left=chr6:166173135-166173295;Right=chr6:166173277-166173465
chr6	CG	SV	166173277	166173465	11	-	.	ID=1571;Type=tandem-duplication;Left=chr6:166173135-166173295;Right=chr6:166173277-166173465
chr6	CG	SV	167408060	167410075	66	.	.	ID=3038;Type=deletion;Left=chr6:167408060-167408484+;Right=chr6:167409580-167410075+;Distance=1520;DiscordantMatePairAlignments=66;LeftRepeat=L1MEe:LINE:L1;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem CTTC;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	167408060	167408484	66	+	.	ID=3038;Type=deletion;Left=chr6:167408060-167408484;Right=chr6:167409580-167410075
chr6	CG	SV	167409580	167410075	66	+	.	ID=3038;Type=deletion;Left=chr6:167408060-167408484;Right=chr6:167409580-167410075
chr6	CG	SV	168459858	168461925	49	.	.	ID=3037;Type=deletion;Left=chr6:168459858-168460139+;Right=chr6:168461689-168461925+;Distance=1831;DiscordantMatePairAlignments=49;LeftRepeat=Self chain;Tandem period 109;RightRepeat=Self chain;Tandem period 109;LeftGenes=NM_214462:-;RightGenes=NM_214462:-;XRef=rs71731358 (chr6:168459767-168461373);Frequency=0.71
chr6	CG	SV	168459858	168460139	49	+	.	ID=3037;Type=deletion;Left=chr6:168459858-168460139;Right=chr6:168461689-168461925
chr6	CG	SV	168461689	168461925	49	+	.	ID=3037;Type=deletion;Left=chr6:168459858-168460139;Right=chr6:168461689-168461925
chr6	CG	SV	169056257	169056416	13	.	.	ID=1566;Type=tandem-duplication;Left=chr6:169056257-169056342-;Right=chr6:169056314-169056416-;Distance=74;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	169056257	169056342	13	-	.	ID=1566;Type=tandem-duplication;Left=chr6:169056257-169056342;Right=chr6:169056314-169056416
chr6	CG	SV	169056314	169056416	13	-	.	ID=1566;Type=tandem-duplication;Left=chr6:169056257-169056342;Right=chr6:169056314-169056416
chr6	CG	SV	170603646	170604115	40	.	.	ID=1565;Type=tandem-duplication;Left=chr6:170603646-170603837-;Right=chr6:170603827-170604115-;Distance=278;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GT;Tandem GTGAGT;Tandem period 8;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr6	CG	SV	170603646	170603837	40	-	.	ID=1565;Type=tandem-duplication;Left=chr6:170603646-170603837;Right=chr6:170603827-170604115
chr6	CG	SV	170603827	170604115	40	-	.	ID=1565;Type=tandem-duplication;Left=chr6:170603646-170603837;Right=chr6:170603827-170604115
chr7	CG	SV	319245	321414	35	.	.	ID=3034;Type=deletion;Left=chr7:319245-319620+;Right=chr7:321086-321414+;Distance=1841;DiscordantMatePairAlignments=35;LeftRepeat=Self chain;Tandem period 119;Tandem period 178;Tandem period 59;RightRepeat=Self chain;Tandem period 119;Tandem period 178;Tandem period 59;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr7	CG	SV	319245	319620	35	+	.	ID=3034;Type=deletion;Left=chr7:319245-319620;Right=chr7:321086-321414
chr7	CG	SV	321086	321414	35	+	.	ID=3034;Type=deletion;Left=chr7:319245-319620;Right=chr7:321086-321414
chr7	CG	SV	572525	572770	17	.	.	ID=1543;Type=tandem-duplication;Left=chr7:572525-572655-;Right=chr7:572628-572770-;Distance=115;DiscordantMatePairAlignments=17;LeftRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;Self chain;Tandem TCA;Tandem period 12;Tandem period 9;RightRepeat=(CAT)n:Simple_repeat:Simple_repeat;Self chain;Tandem TCA;Tandem period 12;Tandem period 15;Tandem period 9;LeftGenes=NM_001164758:-;NM_001164759:-;NM_001164760:-;NM_001164761:-;NM_001164762:-;NM_002735:-;RightGenes=NM_001164758:-;NM_001164759:-;NM_001164760:-;NM_001164761:-;NM_001164762:-;NM_002735:-;XRef=;Frequency=1.00
chr7	CG	SV	572525	572655	17	-	.	ID=1543;Type=tandem-duplication;Left=chr7:572525-572655;Right=chr7:572628-572770
chr7	CG	SV	572628	572770	17	-	.	ID=1543;Type=tandem-duplication;Left=chr7:572525-572655;Right=chr7:572628-572770
chr7	CG	SV	899343	900121	72	+	.	ID=4264;Type=interchromosomal;Left=chr7:899343-900121+;Right=chr8:49927450-49927922-;Distance=;DiscordantMatePairAlignments=72;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 35;Tandem period 67;RightRepeat=;LeftGenes=NM_015949:+;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	49927450	49927922	72	+	.	ID=4264;Type=interchromosomal;Left=chr7:899343-900121+;Right=chr8:49927450-49927922-;Distance=;DiscordantMatePairAlignments=72;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 35;Tandem period 67;RightRepeat=;LeftGenes=NM_015949:+;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	1042850	1046831	14	.	.	ID=3031;Type=deletion;Left=chr7:1042850-1043361+;Right=chr7:1046369-1046831+;Distance=3519;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_001134395:-;NM_001134396:-;NM_032350:-;RightGenes=NM_001134395:-;NM_001134396:-;NM_032350:-;XRef=;Frequency=0.35
chr7	CG	SV	1042850	1043361	14	+	.	ID=3031;Type=deletion;Left=chr7:1042850-1043361;Right=chr7:1046369-1046831
chr7	CG	SV	1046369	1046831	14	+	.	ID=3031;Type=deletion;Left=chr7:1042850-1043361;Right=chr7:1046369-1046831
chr7	CG	SV	1133860	1135950	18	.	.	ID=3030;Type=deletion;Left=chr7:1133860-1134092+;Right=chr7:1135668-1135950+;Distance=1808;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;Tandem period 46;RightRepeat=AluJo:SINE:Alu;Self chain;Tandem period 46;LeftGenes=NM_001134395:-;NM_001134396:-;NM_032350:-;RightGenes=NM_001134395:-;NM_001134396:-;NM_032350:-;XRef=;Frequency=0.47
chr7	CG	SV	1133860	1134092	18	+	.	ID=3030;Type=deletion;Left=chr7:1133860-1134092;Right=chr7:1135668-1135950
chr7	CG	SV	1135668	1135950	18	+	.	ID=3030;Type=deletion;Left=chr7:1133860-1134092;Right=chr7:1135668-1135950
chr7	CG	SV	1151598	1154640	62	.	.	ID=3029;Type=deletion;Left=chr7:1151598-1152041+;Right=chr7:1154188-1154640+;Distance=2590;DiscordantMatePairAlignments=62;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71703948 (chr7:1151590-1154180);Frequency=0.94
chr7	CG	SV	1151598	1152041	62	+	.	ID=3029;Type=deletion;Left=chr7:1151598-1152041;Right=chr7:1154188-1154640
chr7	CG	SV	1154188	1154640	62	+	.	ID=3029;Type=deletion;Left=chr7:1151598-1152041;Right=chr7:1154188-1154640
chr7	CG	SV	1162362	1163088	12	.	.	ID=3028;Type=deletion;Left=chr7:1162362-1162809+;Right=chr7:1162802-1163088+;Distance=440;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem period 63;RightRepeat=Self chain;LeftGenes=NM_182491:-;RightGenes=NM_182491:-;XRef=;Frequency=0.41
chr7	CG	SV	1162362	1162809	12	+	.	ID=3028;Type=deletion;Left=chr7:1162362-1162809;Right=chr7:1162802-1163088
chr7	CG	SV	1162802	1163088	12	+	.	ID=3028;Type=deletion;Left=chr7:1162362-1162809;Right=chr7:1162802-1163088
chr7	CG	SV	4047791	4049248	65	.	.	ID=3026;Type=deletion;Left=chr7:4047791-4048265+;Right=chr7:4048823-4049248+;Distance=1032;DiscordantMatePairAlignments=65;LeftRepeat=L1MC1:LINE:L1;RightRepeat=;LeftGenes=NM_152744:+;RightGenes=NM_152744:+;XRef=rs71877778 (chr7:4047791-4048823);Frequency=0.06
chr7	CG	SV	4047791	4048265	65	+	.	ID=3026;Type=deletion;Left=chr7:4047791-4048265;Right=chr7:4048823-4049248
chr7	CG	SV	4048823	4049248	65	+	.	ID=3026;Type=deletion;Left=chr7:4047791-4048265;Right=chr7:4048823-4049248
chr7	CG	SV	4089749	4089897	11	.	.	ID=1542;Type=tandem-duplication;Left=chr7:4089749-4089823-;Right=chr7:4089827-4089897-;Distance=74;DiscordantMatePairAlignments=11;LeftRepeat=CT-rich:Low_complexity:Low_complexity;Tandem period 20;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem period 20;LeftGenes=NM_152744:+;RightGenes=NM_152744:+;XRef=;Frequency=0.15
chr7	CG	SV	4089749	4089823	11	-	.	ID=1542;Type=tandem-duplication;Left=chr7:4089749-4089823;Right=chr7:4089827-4089897
chr7	CG	SV	4089827	4089897	11	-	.	ID=1542;Type=tandem-duplication;Left=chr7:4089749-4089823;Right=chr7:4089827-4089897
chr7	CG	SV	9601175	9603034	41	.	.	ID=3025;Type=deletion;Left=chr7:9601175-9601540+;Right=chr7:9602518-9603034+;Distance=1343;DiscordantMatePairAlignments=41;LeftRepeat=THE1D-int:LTR:MaLR;RightRepeat=THE1D-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs71014005 (chr7:9601175-9602518);Frequency=1.00
chr7	CG	SV	9601175	9601540	41	+	.	ID=3025;Type=deletion;Left=chr7:9601175-9601540;Right=chr7:9602518-9603034
chr7	CG	SV	9602518	9603034	41	+	.	ID=3025;Type=deletion;Left=chr7:9601175-9601540;Right=chr7:9602518-9603034
chr7	CG	SV	16138298	16141046	75	.	.	ID=3023;Type=deletion;Left=chr7:16138298-16138656+;Right=chr7:16140597-16141046+;Distance=2299;DiscordantMatePairAlignments=75;LeftRepeat=MLT1A0-int:LTR:MaLR;RightRepeat=Charlie3:DNA:MER1_type;LeftGenes=NM_001101417:-;NM_001101426:-;RightGenes=NM_001101417:-;NM_001101426:-;XRef=rs67864719 (chr7:16138298-16140597);Frequency=0.71
chr7	CG	SV	16138298	16138656	75	+	.	ID=3023;Type=deletion;Left=chr7:16138298-16138656;Right=chr7:16140597-16141046
chr7	CG	SV	16140597	16141046	75	+	.	ID=3023;Type=deletion;Left=chr7:16138298-16138656;Right=chr7:16140597-16141046
chr7	CG	SV	22401328	22403706	106	.	.	ID=3022;Type=deletion;Left=chr7:22401328-22401792+;Right=chr7:22403288-22403706+;Distance=1960;DiscordantMatePairAlignments=106;LeftRepeat=LOR1a:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71839705 (chr7:22401325-22403285);Frequency=0.71
chr7	CG	SV	22401328	22401792	106	+	.	ID=3022;Type=deletion;Left=chr7:22401328-22401792;Right=chr7:22403288-22403706
chr7	CG	SV	22403288	22403706	106	+	.	ID=3022;Type=deletion;Left=chr7:22401328-22401792;Right=chr7:22403288-22403706
chr7	CG	SV	24004690	24007077	45	.	.	ID=3021;Type=deletion;Left=chr7:24004690-24005179+;Right=chr7:24006599-24007077+;Distance=1909;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=rs68096632 (chr7:24004686-24006595);Frequency=0.94
chr7	CG	SV	24004690	24005179	45	+	.	ID=3021;Type=deletion;Left=chr7:24004690-24005179;Right=chr7:24006599-24007077
chr7	CG	SV	24006599	24007077	45	+	.	ID=3021;Type=deletion;Left=chr7:24004690-24005179;Right=chr7:24006599-24007077
chr7	CG	SV	25023986	25026722	10	.	.	ID=3018;Type=deletion;Left=chr7:25023986-25024174+;Right=chr7:25026395-25026722+;Distance=2409;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr7	CG	SV	25023986	25024174	10	+	.	ID=3018;Type=deletion;Left=chr7:25023986-25024174;Right=chr7:25026395-25026722
chr7	CG	SV	25026395	25026722	10	+	.	ID=3018;Type=deletion;Left=chr7:25023986-25024174;Right=chr7:25026395-25026722
chr7	CG	SV	28180829	28181653	26	.	.	ID=3016;Type=deletion;Left=chr7:28180829-28181360+;Right=chr7:28181193-28181653+;Distance=364;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=;LeftGenes=NM_175061:-;RightGenes=NM_175061:-;XRef=rs66908294 (chr7:28180825-28181189);Frequency=0.76
chr7	CG	SV	28180829	28181360	26	+	.	ID=3016;Type=deletion;Left=chr7:28180829-28181360;Right=chr7:28181193-28181653
chr7	CG	SV	28181193	28181653	26	+	.	ID=3016;Type=deletion;Left=chr7:28180829-28181360;Right=chr7:28181193-28181653
chr7	CG	SV	28540835	28542076	47	.	.	ID=3015;Type=deletion;Left=chr7:28540835-28541252+;Right=chr7:28541685-28542076+;Distance=850;DiscordantMatePairAlignments=47;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_004904:+;NM_182898:+;NM_182899:+;RightGenes=NM_004904:+;NM_182898:+;NM_182899:+;XRef=;Frequency=0.59
chr7	CG	SV	28540835	28541252	47	+	.	ID=3015;Type=deletion;Left=chr7:28540835-28541252;Right=chr7:28541685-28542076
chr7	CG	SV	28541685	28542076	47	+	.	ID=3015;Type=deletion;Left=chr7:28540835-28541252;Right=chr7:28541685-28542076
chr7	CG	SV	31553554	31556796	30	.	.	ID=4269;Type=complex;Left=chr7:31553554-31553812+;Right=chr7:31556536-31556796-;Distance=3242;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;THE1C:LTR:MaLR;RightRepeat=Self chain;LeftGenes=NM_194300:+;RightGenes=NM_194300:+;XRef=;Frequency=0.59
chr7	CG	SV	31553554	31553812	30	+	.	ID=4269;Type=complex;Left=chr7:31553554-31553812;Right=chr7:31556536-31556796
chr7	CG	SV	31556536	31556796	30	+	.	ID=4269;Type=complex;Left=chr7:31553554-31553812;Right=chr7:31556536-31556796
chr7	CG	SV	31556796	31558691	11	.	.	ID=3013;Type=complex;Left=chr7:31556796-31556957+;Right=chr7:31558520-31558691+;Distance=1724;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=NM_194300:+;RightGenes=NM_194300:+;XRef=;Frequency=0.59
chr7	CG	SV	31556796	31556957	11	+	.	ID=3013;Type=complex;Left=chr7:31556796-31556957;Right=chr7:31558520-31558691
chr7	CG	SV	31558520	31558691	11	+	.	ID=3013;Type=complex;Left=chr7:31556796-31556957;Right=chr7:31558520-31558691
chr7	CG	SV	32356690	32360047	58	.	.	ID=3012;Type=deletion;Left=chr7:32356690-32357285+;Right=chr7:32359651-32360047+;Distance=2961;DiscordantMatePairAlignments=58;LeftRepeat=(TA)n:Simple_repeat:Simple_repeat;Self chain;Tandem AT;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67720953 (chr7:32356676-32359637);Frequency=0.94
chr7	CG	SV	32356690	32357285	58	+	.	ID=3012;Type=deletion;Left=chr7:32356690-32357285;Right=chr7:32359651-32360047
chr7	CG	SV	32359651	32360047	58	+	.	ID=3012;Type=deletion;Left=chr7:32356690-32357285;Right=chr7:32359651-32360047
chr7	CG	SV	33865381	33866100	24	.	.	ID=3011;Type=deletion;Left=chr7:33865381-33865901+;Right=chr7:33865712-33866100+;Distance=331;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66914971 (chr7:33865366-33865697);Frequency=1.00
chr7	CG	SV	33865381	33865901	24	+	.	ID=3011;Type=deletion;Left=chr7:33865381-33865901;Right=chr7:33865712-33866100
chr7	CG	SV	33865712	33866100	24	+	.	ID=3011;Type=deletion;Left=chr7:33865381-33865901;Right=chr7:33865712-33866100
chr7	CG	SV	42090594	44892832	10	.	.	ID=1541;Type=tandem-duplication;Left=chr7:42090594-42090944-;Right=chr7:44892393-44892832-;Distance=2801888;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_000168:-;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	42090594	42090944	10	-	.	ID=1541;Type=tandem-duplication;Left=chr7:42090594-42090944;Right=chr7:44892393-44892832
chr7	CG	SV	44892393	44892832	10	-	.	ID=1541;Type=tandem-duplication;Left=chr7:42090594-42090944;Right=chr7:44892393-44892832
chr7	CG	SV	47674949	47676054	29	.	.	ID=1540;Type=tandem-duplication;Left=chr7:47674949-47675243-;Right=chr7:47675559-47676054-;Distance=811;DiscordantMatePairAlignments=29;LeftRepeat=MLT1B:LTR:MaLR;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr7	CG	SV	47674949	47675243	29	-	.	ID=1540;Type=tandem-duplication;Left=chr7:47674949-47675243;Right=chr7:47675559-47676054
chr7	CG	SV	47675559	47676054	29	-	.	ID=1540;Type=tandem-duplication;Left=chr7:47674949-47675243;Right=chr7:47675559-47676054
chr7	CG	SV	55254252	55257033	25	.	.	ID=3006;Type=deletion;Left=chr7:55254252-55254790+;Right=chr7:55256570-55257033+;Distance=2318;DiscordantMatePairAlignments=25;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71805120 (chr7:55254237-55256555);Frequency=0.82
chr7	CG	SV	55254252	55254790	25	+	.	ID=3006;Type=deletion;Left=chr7:55254252-55254790;Right=chr7:55256570-55257033
chr7	CG	SV	55256570	55257033	25	+	.	ID=3006;Type=deletion;Left=chr7:55254252-55254790;Right=chr7:55256570-55257033
chr7	CG	SV	63953256	63955934	27	.	.	ID=3001;Type=deletion;Left=chr7:63953256-63953675+;Right=chr7:63955507-63955934+;Distance=2251;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;RightRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;LeftGenes=;RightGenes=;XRef=rs71014041 (chr7:63953259-63955510);Frequency=1.00
chr7	CG	SV	63953256	63953675	27	+	.	ID=3001;Type=deletion;Left=chr7:63953256-63953675;Right=chr7:63955507-63955934
chr7	CG	SV	63955507	63955934	27	+	.	ID=3001;Type=deletion;Left=chr7:63953256-63953675;Right=chr7:63955507-63955934
chr7	CG	SV	65831301	73020214	17	.	.	ID=3000;Type=deletion;Left=chr7:65831301-65831397+;Right=chr7:73020090-73020214+;Distance=7188789;DiscordantMatePairAlignments=17;LeftRepeat=C-rich:Low_complexity:Low_complexity;SegDup;Self chain;Tandem period 12;Tandem period 36;RightRepeat=C-rich:Low_complexity:Low_complexity;SegDup;Self chain;Tandem period 12;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	65831301	65831397	17	+	.	ID=3000;Type=deletion;Left=chr7:65831301-65831397;Right=chr7:73020090-73020214
chr7	CG	SV	73020090	73020214	17	+	.	ID=3000;Type=deletion;Left=chr7:65831301-65831397;Right=chr7:73020090-73020214
chr7	CG	SV	67273208	97920775	39	.	.	ID=4266;Type=probable-inversion;Left=chr7:67273208-67273560+;Right=chr7:97920474-97920775-;Distance=30647567;DiscordantMatePairAlignments=39;LeftRepeat=MER5A:DNA:MER1_type;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	67273208	67273560	39	+	.	ID=4266;Type=probable-inversion;Left=chr7:67273208-67273560;Right=chr7:97920474-97920775
chr7	CG	SV	97920474	97920775	39	+	.	ID=4266;Type=probable-inversion;Left=chr7:67273208-67273560;Right=chr7:97920474-97920775
chr7	CG	SV	68100019	68100597	10	.	.	ID=2998;Type=deletion;Left=chr7:68100019-68100550+;Right=chr7:68100338-68100597+;Distance=319;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	68100019	68100550	10	+	.	ID=2998;Type=deletion;Left=chr7:68100019-68100550;Right=chr7:68100338-68100597
chr7	CG	SV	68100338	68100597	10	+	.	ID=2998;Type=deletion;Left=chr7:68100019-68100550;Right=chr7:68100338-68100597
chr7	CG	SV	68757558	68758108	142	+	.	ID=2293;Type=interchromosomal;Left=chr7:68757558-68758108+;Right=chr19:879591-880076+;Distance=;DiscordantMatePairAlignments=142;LeftRepeat=MIR:SINE:MIR;Self chain;RightRepeat=MIRb:SINE:MIR;Self chain;LeftGenes=NM_001127231:+;NM_001127232:+;NM_015570:+;RightGenes=NM_005224:+;XRef=;Frequency=0.00
chr19	CG	SV	879591	880076	142	+	.	ID=2293;Type=interchromosomal;Left=chr7:68757558-68758108+;Right=chr19:879591-880076+;Distance=;DiscordantMatePairAlignments=142;LeftRepeat=MIR:SINE:MIR;Self chain;RightRepeat=MIRb:SINE:MIR;Self chain;LeftGenes=NM_001127231:+;NM_001127232:+;NM_015570:+;RightGenes=NM_005224:+;XRef=;Frequency=0.00
chr7	CG	SV	70058899	70076826	36	.	.	ID=4268;Type=probable-inversion;Left=chr7:70058899-70059224+;Right=chr7:70076294-70076826-;Distance=17927;DiscordantMatePairAlignments=36;LeftRepeat=MER4C:LTR:ERV1;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr7	CG	SV	70058899	70059224	36	+	.	ID=4268;Type=probable-inversion;Left=chr7:70058899-70059224;Right=chr7:70076294-70076826
chr7	CG	SV	70076294	70076826	36	+	.	ID=4268;Type=probable-inversion;Left=chr7:70058899-70059224;Right=chr7:70076294-70076826
chr7	CG	SV	70849850	70851287	80	.	.	ID=2996;Type=deletion;Left=chr7:70849850-70850368+;Right=chr7:70850906-70851287+;Distance=1056;DiscordantMatePairAlignments=80;LeftRepeat=AluSp:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	70849850	70850368	80	+	.	ID=2996;Type=deletion;Left=chr7:70849850-70850368;Right=chr7:70850906-70851287
chr7	CG	SV	70850906	70851287	80	+	.	ID=2996;Type=deletion;Left=chr7:70849850-70850368;Right=chr7:70850906-70851287
chr7	CG	SV	81279609	81280828	17	.	.	ID=2992;Type=deletion;Left=chr7:81279609-81280168+;Right=chr7:81280516-81280828+;Distance=907;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr7	CG	SV	81279609	81280168	17	+	.	ID=2992;Type=deletion;Left=chr7:81279609-81280168;Right=chr7:81280516-81280828
chr7	CG	SV	81280516	81280828	17	+	.	ID=2992;Type=deletion;Left=chr7:81279609-81280168;Right=chr7:81280516-81280828
chr7	CG	SV	87929243	87930087	20	.	.	ID=2990;Type=deletion;Left=chr7:87929243-87929794+;Right=chr7:87929693-87930087+;Distance=450;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66468286 (chr7:87929235-87929685);Frequency=1.00
chr7	CG	SV	87929243	87929794	20	+	.	ID=2990;Type=deletion;Left=chr7:87929243-87929794;Right=chr7:87929693-87930087
chr7	CG	SV	87929693	87930087	20	+	.	ID=2990;Type=deletion;Left=chr7:87929243-87929794;Right=chr7:87929693-87930087
chr7	CG	SV	89648345	89650838	14	.	.	ID=2988;Type=deletion;Left=chr7:89648345-89648707+;Right=chr7:89650537-89650838+;Distance=2192;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs68048497 (chr7:89648343-89650535);Frequency=0.76
chr7	CG	SV	89648345	89648707	14	+	.	ID=2988;Type=deletion;Left=chr7:89648345-89648707;Right=chr7:89650537-89650838
chr7	CG	SV	89650537	89650838	14	+	.	ID=2988;Type=deletion;Left=chr7:89648345-89648707;Right=chr7:89650537-89650838
chr7	CG	SV	96313837	96320445	97	.	.	ID=2983;Type=deletion;Left=chr7:96313837-96314397+;Right=chr7:96319945-96320445+;Distance=6108;DiscordantMatePairAlignments=97;LeftRepeat=Self chain;T-rich:Low_complexity:Low_complexity;RightRepeat=L1MD2:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71014064 (chr7:96313837-96319945);Frequency=1.00
chr7	CG	SV	96313837	96314397	97	+	.	ID=2983;Type=deletion;Left=chr7:96313837-96314397;Right=chr7:96319945-96320445
chr7	CG	SV	96319945	96320445	97	+	.	ID=2983;Type=deletion;Left=chr7:96313837-96314397;Right=chr7:96319945-96320445
chr7	CG	SV	100388155	100389183	27	.	.	ID=1528;Type=distal-duplication;Left=chr7:100388155-100388521-;Right=chr7:100388925-100389183-;Distance=662;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	100388155	100388521	27	-	.	ID=1528;Type=distal-duplication;Left=chr7:100388155-100388521;Right=chr7:100388925-100389183
chr7	CG	SV	100388925	100389183	27	-	.	ID=1528;Type=distal-duplication;Left=chr7:100388155-100388521;Right=chr7:100388925-100389183
chr7	CG	SV	100388721	100389296	29	.	.	ID=2981;Type=distal-duplication;Left=chr7:100388721-100389445+;Right=chr7:100389180-100389296+;Distance=459;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;Tandem period 51;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	100388721	100389445	29	+	.	ID=2981;Type=distal-duplication;Left=chr7:100388721-100389445;Right=chr7:100389180-100389296
chr7	CG	SV	100389180	100389296	29	+	.	ID=2981;Type=distal-duplication;Left=chr7:100388721-100389445;Right=chr7:100389180-100389296
chr7	CG	SV	100400459	100401410	25	.	.	ID=2980;Type=deletion;Left=chr7:100400459-100400915+;Right=chr7:100401199-100401410+;Distance=740;DiscordantMatePairAlignments=25;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_001164462:+;RightGenes=NM_001164462:+;XRef=;Frequency=1.00
chr7	CG	SV	100400459	100400915	25	+	.	ID=2980;Type=deletion;Left=chr7:100400459-100400915;Right=chr7:100401199-100401410
chr7	CG	SV	100401199	100401410	25	+	.	ID=2980;Type=deletion;Left=chr7:100400459-100400915;Right=chr7:100401199-100401410
chr7	CG	SV	100787986	100790857	62	.	.	ID=2979;Type=deletion;Left=chr7:100787986-100788552+;Right=chr7:100790532-100790857+;Distance=2546;DiscordantMatePairAlignments=62;LeftRepeat=Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs66862807 (chr7:100787986-100790532);Frequency=0.41
chr7	CG	SV	100787986	100788552	62	+	.	ID=2979;Type=deletion;Left=chr7:100787986-100788552;Right=chr7:100790532-100790857
chr7	CG	SV	100790532	100790857	62	+	.	ID=2979;Type=deletion;Left=chr7:100787986-100788552;Right=chr7:100790532-100790857
chr7	CG	SV	100845908	100847497	101	.	.	ID=2978;Type=deletion;Left=chr7:100845908-100846371+;Right=chr7:100847017-100847497+;Distance=1109;DiscordantMatePairAlignments=101;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_133457:+;RightGenes=NM_133457:+;XRef=;Frequency=0.29
chr7	CG	SV	100845908	100846371	101	+	.	ID=2978;Type=deletion;Left=chr7:100845908-100846371;Right=chr7:100847017-100847497
chr7	CG	SV	100847017	100847497	101	+	.	ID=2978;Type=deletion;Left=chr7:100845908-100846371;Right=chr7:100847017-100847497
chr7	CG	SV	109223925	109241574	21	.	.	ID=2975;Type=deletion;Left=chr7:109223925-109224377+;Right=chr7:109241137-109241574+;Distance=17212;DiscordantMatePairAlignments=21;LeftRepeat=L1PA4:LINE:L1;RightRepeat=L1MD2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr7	CG	SV	109223925	109224377	21	+	.	ID=2975;Type=deletion;Left=chr7:109223925-109224377;Right=chr7:109241137-109241574
chr7	CG	SV	109241137	109241574	21	+	.	ID=2975;Type=deletion;Left=chr7:109223925-109224377;Right=chr7:109241137-109241574
chr7	CG	SV	110628806	110689348	35	.	.	ID=2974;Type=deletion;Left=chr7:110628806-110629216+;Right=chr7:110688976-110689348+;Distance=60170;DiscordantMatePairAlignments=35;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=NM_032549:-;RightGenes=NM_032549:-;XRef=;Frequency=0.00
chr7	CG	SV	110628806	110629216	35	+	.	ID=2974;Type=deletion;Left=chr7:110628806-110629216;Right=chr7:110688976-110689348
chr7	CG	SV	110688976	110689348	35	+	.	ID=2974;Type=deletion;Left=chr7:110628806-110629216;Right=chr7:110688976-110689348
chr7	CG	SV	113203405	113209847	98	.	.	ID=2973;Type=deletion;Left=chr7:113203405-113203896+;Right=chr7:113209451-113209847+;Distance=6046;DiscordantMatePairAlignments=98;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66950453 (chr7:113203397-113209443);Frequency=1.00
chr7	CG	SV	113203405	113203896	98	+	.	ID=2973;Type=deletion;Left=chr7:113203405-113203896;Right=chr7:113209451-113209847
chr7	CG	SV	113209451	113209847	98	+	.	ID=2973;Type=deletion;Left=chr7:113203405-113203896;Right=chr7:113209451-113209847
chr7	CG	SV	116629253	116630138	11	.	.	ID=2972;Type=deletion;Left=chr7:116629253-116629756+;Right=chr7:116629564-116630138+;Distance=311;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=NM_018412:+;NM_021908:+;NR_002332:+;RightGenes=NM_018412:+;NM_021908:+;NR_002332:+;XRef=rs10522424 (chr7:116629253-116629564);Frequency=0.71
chr7	CG	SV	116629253	116629756	11	+	.	ID=2972;Type=deletion;Left=chr7:116629253-116629756;Right=chr7:116629564-116630138
chr7	CG	SV	116629564	116630138	11	+	.	ID=2972;Type=deletion;Left=chr7:116629253-116629756;Right=chr7:116629564-116630138
chr7	CG	SV	118131051	118131783	22	.	.	ID=2971;Type=deletion;Left=chr7:118131051-118131542+;Right=chr7:118131406-118131783+;Distance=355;DiscordantMatePairAlignments=22;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=ERVL-E:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=rs72457038 (chr7:118131036-118131391);Frequency=1.00
chr7	CG	SV	118131051	118131542	22	+	.	ID=2971;Type=deletion;Left=chr7:118131051-118131542;Right=chr7:118131406-118131783
chr7	CG	SV	118131406	118131783	22	+	.	ID=2971;Type=deletion;Left=chr7:118131051-118131542;Right=chr7:118131406-118131783
chr7	CG	SV	118618484	118622310	60	.	.	ID=2970;Type=deletion;Left=chr7:118618484-118618879+;Right=chr7:118621990-118622310+;Distance=3506;DiscordantMatePairAlignments=60;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66490609 (chr7:118618495-118621990);Frequency=0.53
chr7	CG	SV	118618484	118618879	60	+	.	ID=2970;Type=deletion;Left=chr7:118618484-118618879;Right=chr7:118621990-118622310
chr7	CG	SV	118621990	118622310	60	+	.	ID=2970;Type=deletion;Left=chr7:118618484-118618879;Right=chr7:118621990-118622310
chr7	CG	SV	125833125	125839093	48	.	.	ID=2968;Type=deletion;Left=chr7:125833125-125833583+;Right=chr7:125838686-125839093+;Distance=5561;DiscordantMatePairAlignments=48;LeftRepeat=;RightRepeat=MLT1J:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs66526160 (chr7:125833122-125838683);Frequency=0.94
chr7	CG	SV	125833125	125833583	48	+	.	ID=2968;Type=deletion;Left=chr7:125833125-125833583;Right=chr7:125838686-125839093
chr7	CG	SV	125838686	125839093	48	+	.	ID=2968;Type=deletion;Left=chr7:125833125-125833583;Right=chr7:125838686-125839093
chr7	CG	SV	134000547	134001186	12	.	.	ID=2963;Type=deletion;Left=chr7:134000547-134001104+;Right=chr7:134000970-134001186+;Distance=423;DiscordantMatePairAlignments=12;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001724:+;NM_199186:+;RightGenes=NM_001724:+;NM_199186:+;XRef=rs71828851 (chr7:134000539-134000962);Frequency=0.59
chr7	CG	SV	134000547	134001104	12	+	.	ID=2963;Type=deletion;Left=chr7:134000547-134001104;Right=chr7:134000970-134001186
chr7	CG	SV	134000970	134001186	12	+	.	ID=2963;Type=deletion;Left=chr7:134000547-134001104;Right=chr7:134000970-134001186
chr7	CG	SV	137946991	137948196	24	.	.	ID=2962;Type=deletion;Left=chr7:137946991-137947328+;Right=chr7:137947758-137948196+;Distance=767;DiscordantMatePairAlignments=24;LeftRepeat=L1MA5A:LINE:L1;RightRepeat=;LeftGenes=NM_001139456:-;NM_174959:-;RightGenes=NM_001139456:-;NM_174959:-;XRef=rs72467481 (chr7:137946996-137947763);Frequency=0.82
chr7	CG	SV	137946991	137947328	24	+	.	ID=2962;Type=deletion;Left=chr7:137946991-137947328;Right=chr7:137947758-137948196
chr7	CG	SV	137947758	137948196	24	+	.	ID=2962;Type=deletion;Left=chr7:137946991-137947328;Right=chr7:137947758-137948196
chr7	CG	SV	141726639	141727505	16	.	.	ID=2958;Type=deletion;Left=chr7:141726639-141727166+;Right=chr7:141726977-141727505+;Distance=338;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71014097 (chr7:141726639-141726977);Frequency=1.00
chr7	CG	SV	141726639	141727166	16	+	.	ID=2958;Type=deletion;Left=chr7:141726639-141727166;Right=chr7:141726977-141727505
chr7	CG	SV	141726977	141727505	16	+	.	ID=2958;Type=deletion;Left=chr7:141726639-141727166;Right=chr7:141726977-141727505
chr7	CG	SV	144547817	144552742	58	.	.	ID=2956;Type=deletion;Left=chr7:144547817-144548344+;Right=chr7:144552334-144552742+;Distance=4517;DiscordantMatePairAlignments=58;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr7	CG	SV	144547817	144548344	58	+	.	ID=2956;Type=deletion;Left=chr7:144547817-144548344;Right=chr7:144552334-144552742
chr7	CG	SV	144552334	144552742	58	+	.	ID=2956;Type=deletion;Left=chr7:144547817-144548344;Right=chr7:144552334-144552742
chr7	CG	SV	144634401	144650321	120	.	.	ID=2955;Type=deletion;Left=chr7:144634401-144634812+;Right=chr7:144649787-144650321+;Distance=15386;DiscordantMatePairAlignments=120;LeftRepeat=;RightRepeat=HERV16:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	144634401	144634812	120	+	.	ID=2955;Type=deletion;Left=chr7:144634401-144634812;Right=chr7:144649787-144650321
chr7	CG	SV	144649787	144650321	120	+	.	ID=2955;Type=deletion;Left=chr7:144634401-144634812;Right=chr7:144649787-144650321
chr7	CG	SV	147703799	147707791	20	.	.	ID=2954;Type=deletion;Left=chr7:147703799-147704226+;Right=chr7:147707259-147707791+;Distance=3460;DiscordantMatePairAlignments=20;LeftRepeat=AluSg1:SINE:Alu;RightRepeat=;LeftGenes=NM_014141:+;RightGenes=NM_014141:+;XRef=rs71857214 (chr7:147703799-147707258);Frequency=1.00
chr7	CG	SV	147703799	147704226	20	+	.	ID=2954;Type=deletion;Left=chr7:147703799-147704226;Right=chr7:147707259-147707791
chr7	CG	SV	147707259	147707791	20	+	.	ID=2954;Type=deletion;Left=chr7:147703799-147704226;Right=chr7:147707259-147707791
chr7	CG	SV	150349957	150350544	12	.	.	ID=2952;Type=deletion;Left=chr7:150349957-150350428+;Right=chr7:150350444-150350544+;Distance=487;DiscordantMatePairAlignments=12;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_173681:-;RightGenes=NM_173681:-;XRef=;Frequency=0.18
chr7	CG	SV	150349957	150350428	12	+	.	ID=2952;Type=deletion;Left=chr7:150349957-150350428;Right=chr7:150350444-150350544
chr7	CG	SV	150350444	150350544	12	+	.	ID=2952;Type=deletion;Left=chr7:150349957-150350428;Right=chr7:150350444-150350544
chr7	CG	SV	151912656	151915637	15	.	.	ID=2949;Type=deletion;Left=chr7:151912656-151912998+;Right=chr7:151915268-151915637+;Distance=2612;DiscordantMatePairAlignments=15;LeftRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;RightRepeat=L1MC3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr7	CG	SV	151912656	151912998	15	+	.	ID=2949;Type=deletion;Left=chr7:151912656-151912998;Right=chr7:151915268-151915637
chr7	CG	SV	151915268	151915637	15	+	.	ID=2949;Type=deletion;Left=chr7:151912656-151912998;Right=chr7:151915268-151915637
chr7	CG	SV	152941071	152942245	33	.	.	ID=2948;Type=deletion;Left=chr7:152941071-152941414+;Right=chr7:152941761-152942245+;Distance=690;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;RightRepeat=L1MC4:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71016803 (chr7:152941071-152941761);Frequency=1.00
chr7	CG	SV	152941071	152941414	33	+	.	ID=2948;Type=deletion;Left=chr7:152941071-152941414;Right=chr7:152941761-152942245
chr7	CG	SV	152941761	152942245	33	+	.	ID=2948;Type=deletion;Left=chr7:152941071-152941414;Right=chr7:152941761-152942245
chr7	CG	SV	153784753	153786286	27	.	.	ID=2947;Type=deletion;Left=chr7:153784753-153785308+;Right=chr7:153786012-153786286+;Distance=1259;DiscordantMatePairAlignments=27;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=;LeftGenes=NM_001039350:+;NM_001936:+;NM_130797:+;RightGenes=NM_001039350:+;NM_001936:+;NM_130797:+;XRef=rs67517515 (chr7:153784744-153786003);Frequency=0.94
chr7	CG	SV	153784753	153785308	27	+	.	ID=2947;Type=deletion;Left=chr7:153784753-153785308;Right=chr7:153786012-153786286
chr7	CG	SV	153786012	153786286	27	+	.	ID=2947;Type=deletion;Left=chr7:153784753-153785308;Right=chr7:153786012-153786286
chr7	CG	SV	154079633	154080697	11	.	.	ID=2945;Type=deletion;Left=chr7:154079633-154079985+;Right=chr7:154080402-154080697+;Distance=769;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 109;Tandem period 37;RightRepeat=Self chain;LeftGenes=NM_001039350:+;NM_001936:+;NM_130797:+;RightGenes=NM_001039350:+;NM_001936:+;NM_130797:+;XRef=rs72425548 (chr7:154079623-154080244);Frequency=0.76
chr7	CG	SV	154079633	154079985	11	+	.	ID=2945;Type=deletion;Left=chr7:154079633-154079985;Right=chr7:154080402-154080697
chr7	CG	SV	154080402	154080697	11	+	.	ID=2945;Type=deletion;Left=chr7:154079633-154079985;Right=chr7:154080402-154080697
chr7	CG	SV	154507078	154511559	62	.	.	ID=1522;Type=distal-duplication;Left=chr7:154507078-154507485-;Right=chr7:154511051-154511559-;Distance=4074;DiscordantMatePairAlignments=62;LeftRepeat=;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=NM_024012:+;RightGenes=;XRef=;Frequency=0.35
chr7	CG	SV	154507078	154507485	62	-	.	ID=1522;Type=distal-duplication;Left=chr7:154507078-154507485;Right=chr7:154511051-154511559
chr7	CG	SV	154511051	154511559	62	-	.	ID=1522;Type=distal-duplication;Left=chr7:154507078-154507485;Right=chr7:154511051-154511559
chr7	CG	SV	154507932	154511891	39	.	.	ID=2943;Type=distal-duplication;Left=chr7:154507932-154508381+;Right=chr7:154511564-154511891+;Distance=3632;DiscordantMatePairAlignments=39;LeftRepeat=;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=NM_024012:+;RightGenes=;XRef=;Frequency=0.29
chr7	CG	SV	154507932	154508381	39	+	.	ID=2943;Type=distal-duplication;Left=chr7:154507932-154508381;Right=chr7:154511564-154511891
chr7	CG	SV	154511564	154511891	39	+	.	ID=2943;Type=distal-duplication;Left=chr7:154507932-154508381;Right=chr7:154511564-154511891
chr7	CG	SV	154563084	154563952	11	.	.	ID=2942;Type=deletion;Left=chr7:154563084-154563581+;Right=chr7:154563452-154563952+;Distance=368;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 16;RightRepeat=Self chain;Tandem period 16;LeftGenes=;RightGenes=;XRef=rs3062313 (chr7:154563060-154563413);Frequency=0.65
chr7	CG	SV	154563084	154563581	11	+	.	ID=2942;Type=deletion;Left=chr7:154563084-154563581;Right=chr7:154563452-154563952
chr7	CG	SV	154563452	154563952	11	+	.	ID=2942;Type=deletion;Left=chr7:154563084-154563581;Right=chr7:154563452-154563952
chr7	CG	SV	157722235	157723469	79	.	.	ID=2938;Type=complex;Left=chr7:157722235-157722923+;Right=chr7:157723209-157723469+;Distance=974;DiscordantMatePairAlignments=79;LeftRepeat=Self chain;RightRepeat=LTR5_Hs:LTR:ERVK;Self chain;LeftGenes=NM_002847:-;NM_130842:-;NM_130843:-;RightGenes=NM_002847:-;NM_130842:-;NM_130843:-;XRef=;Frequency=0.94
chr7	CG	SV	157722235	157722923	79	+	.	ID=2938;Type=complex;Left=chr7:157722235-157722923;Right=chr7:157723209-157723469
chr7	CG	SV	157723209	157723469	79	+	.	ID=2938;Type=complex;Left=chr7:157722235-157722923;Right=chr7:157723209-157723469
chr7	CG	SV	157722243	157723917	172	.	.	ID=2937;Type=complex;Left=chr7:157722243-157722594+;Right=chr7:157723217-157723917+;Distance=974;DiscordantMatePairAlignments=172;LeftRepeat=LTR5_Hs:LTR:ERVK;Self chain;RightRepeat=Self chain;LeftGenes=NM_002847:-;NM_130842:-;NM_130843:-;RightGenes=NM_002847:-;NM_130842:-;NM_130843:-;XRef=rs67417246 (chr7:157722243-157723217);Frequency=0.94
chr7	CG	SV	157722243	157722594	172	+	.	ID=2937;Type=complex;Left=chr7:157722243-157722594;Right=chr7:157723217-157723917
chr7	CG	SV	157723217	157723917	172	+	.	ID=2937;Type=complex;Left=chr7:157722243-157722594;Right=chr7:157723217-157723917
chr7	CG	SV	157739404	157740526	98	.	.	ID=2936;Type=deletion;Left=chr7:157739404-157739997+;Right=chr7:157740147-157740526+;Distance=743;DiscordantMatePairAlignments=98;LeftRepeat=Self chain;Tandem period 74;RightRepeat=Self chain;Tandem period 74;LeftGenes=NM_002847:-;NM_130842:-;NM_130843:-;RightGenes=NM_002847:-;NM_130842:-;NM_130843:-;XRef=rs67809280 (chr7:157739419-157740162);Frequency=0.76
chr7	CG	SV	157739404	157739997	98	+	.	ID=2936;Type=deletion;Left=chr7:157739404-157739997;Right=chr7:157740147-157740526
chr7	CG	SV	157740147	157740526	98	+	.	ID=2936;Type=deletion;Left=chr7:157739404-157739997;Right=chr7:157740147-157740526
chr7	CG	SV	158080602	158080740	94	.	.	ID=1519;Type=tandem-duplication;Left=chr7:158080602-158080686-;Right=chr7:158080654-158080740-;Distance=54;DiscordantMatePairAlignments=94;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGG;Tandem period 9;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	158080602	158080686	94	-	.	ID=1519;Type=tandem-duplication;Left=chr7:158080602-158080686;Right=chr7:158080654-158080740
chr7	CG	SV	158080654	158080740	94	-	.	ID=1519;Type=tandem-duplication;Left=chr7:158080602-158080686;Right=chr7:158080654-158080740
chr7	CG	SV	158691610	158692855	32	.	.	ID=2933;Type=deletion;Left=chr7:158691610-158691820+;Right=chr7:158692438-158692855+;Distance=828;DiscordantMatePairAlignments=32;LeftRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;Tandem period 27;Tandem period 32;RightRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;Tandem period 32;Tandem period 61;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr7	CG	SV	158691610	158691820	32	+	.	ID=2933;Type=deletion;Left=chr7:158691610-158691820;Right=chr7:158692438-158692855
chr7	CG	SV	158692438	158692855	32	+	.	ID=2933;Type=deletion;Left=chr7:158691610-158691820;Right=chr7:158692438-158692855
chr7	CG	SV	158802673	158817874	62	.	.	ID=2932;Type=deletion;Left=chr7:158802673-158803101+;Right=chr7:158817343-158817874+;Distance=14670;DiscordantMatePairAlignments=62;LeftRepeat=MER57A:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr7	CG	SV	158802673	158803101	62	+	.	ID=2932;Type=deletion;Left=chr7:158802673-158803101;Right=chr7:158817343-158817874
chr7	CG	SV	158817343	158817874	62	+	.	ID=2932;Type=deletion;Left=chr7:158802673-158803101;Right=chr7:158817343-158817874
chr8	CG	SV	584397	590012	181	.	.	ID=2931;Type=deletion;Left=chr8:584397-584934+;Right=chr8:589414-590012+;Distance=5017;DiscordantMatePairAlignments=181;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66630184 (chr8:584400-589414);Frequency=0.88
chr8	CG	SV	584397	584934	181	+	.	ID=2931;Type=deletion;Left=chr8:584397-584934;Right=chr8:589414-590012
chr8	CG	SV	589414	590012	181	+	.	ID=2931;Type=deletion;Left=chr8:584397-584934;Right=chr8:589414-590012
chr8	CG	SV	951128	955378	18	.	.	ID=2929;Type=deletion;Left=chr8:951128-951539+;Right=chr8:955049-955378+;Distance=3921;DiscordantMatePairAlignments=18;LeftRepeat=SegDup;Self chain;Tandem period 33;Tandem period 64;Tandem period 97;RightRepeat=Self chain;Tandem period 33;Tandem period 64;Tandem period 97;LeftGenes=;RightGenes=;XRef=rs71855433 (chr8:950994-954851);Frequency=0.35
chr8	CG	SV	951128	951539	18	+	.	ID=2929;Type=deletion;Left=chr8:951128-951539;Right=chr8:955049-955378
chr8	CG	SV	955049	955378	18	+	.	ID=2929;Type=deletion;Left=chr8:951128-951539;Right=chr8:955049-955378
chr8	CG	SV	1101261	1101738	33	.	.	ID=1517;Type=tandem-duplication;Left=chr8:1101261-1101510-;Right=chr8:1101617-1101738-;Distance=228;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;Tandem period 45;RightRepeat=Self chain;Tandem period 45;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr8	CG	SV	1101261	1101510	33	-	.	ID=1517;Type=tandem-duplication;Left=chr8:1101261-1101510;Right=chr8:1101617-1101738
chr8	CG	SV	1101617	1101738	33	-	.	ID=1517;Type=tandem-duplication;Left=chr8:1101261-1101510;Right=chr8:1101617-1101738
chr8	CG	SV	1733827	1734776	205	.	.	ID=2925;Type=deletion;Left=chr8:1733827-1734365+;Right=chr8:1734345-1734776+;Distance=518;DiscordantMatePairAlignments=205;LeftRepeat=Self chain;Tandem period 37;RightRepeat=Self chain;Tandem period 37;LeftGenes=;RightGenes=;XRef=rs71843993 (chr8:1733872-1734353);Frequency=0.88
chr8	CG	SV	1733827	1734365	205	+	.	ID=2925;Type=deletion;Left=chr8:1733827-1734365;Right=chr8:1734345-1734776
chr8	CG	SV	1734345	1734776	205	+	.	ID=2925;Type=deletion;Left=chr8:1733827-1734365;Right=chr8:1734345-1734776
chr8	CG	SV	1779809	1780038	50	.	.	ID=1516;Type=tandem-duplication;Left=chr8:1779809-1779913-;Right=chr8:1779927-1780038-;Distance=125;DiscordantMatePairAlignments=50;LeftRepeat=Self chain;Tandem period 43;RightRepeat=Self chain;LeftGenes=NM_014629:+;RightGenes=NM_014629:+;XRef=;Frequency=0.94
chr8	CG	SV	1779809	1779913	50	-	.	ID=1516;Type=tandem-duplication;Left=chr8:1779809-1779913;Right=chr8:1779927-1780038
chr8	CG	SV	1779927	1780038	50	-	.	ID=1516;Type=tandem-duplication;Left=chr8:1779809-1779913;Right=chr8:1779927-1780038
chr8	CG	SV	2166339	2167069	13	.	.	ID=2921;Type=deletion;Left=chr8:2166339-2166829+;Right=chr8:2166662-2167069+;Distance=323;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71981345 (chr8:2166329-2166652);Frequency=0.12
chr8	CG	SV	2166339	2166829	13	+	.	ID=2921;Type=deletion;Left=chr8:2166339-2166829;Right=chr8:2166662-2167069
chr8	CG	SV	2166662	2167069	13	+	.	ID=2921;Type=deletion;Left=chr8:2166339-2166829;Right=chr8:2166662-2167069
chr8	CG	SV	2202942	2203929	76	.	.	ID=2920;Type=deletion;Left=chr8:2202942-2203533+;Right=chr8:2203551-2203929+;Distance=609;DiscordantMatePairAlignments=76;LeftRepeat=Self chain;Tandem period 87;RightRepeat=Self chain;Tandem period 87;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	2202942	2203533	76	+	.	ID=2920;Type=deletion;Left=chr8:2202942-2203533;Right=chr8:2203551-2203929
chr8	CG	SV	2203551	2203929	76	+	.	ID=2920;Type=deletion;Left=chr8:2202942-2203533;Right=chr8:2203551-2203929
chr8	CG	SV	8423453	8424597	19	.	.	ID=2917;Type=deletion;Left=chr8:8423453-8423873+;Right=chr8:8424367-8424597+;Distance=914;DiscordantMatePairAlignments=19;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=FRAM:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72459952 (chr8:8423440-8424354);Frequency=0.82
chr8	CG	SV	8423453	8423873	19	+	.	ID=2917;Type=deletion;Left=chr8:8423453-8423873;Right=chr8:8424367-8424597
chr8	CG	SV	8424367	8424597	19	+	.	ID=2917;Type=deletion;Left=chr8:8423453-8423873;Right=chr8:8424367-8424597
chr8	CG	SV	8764151	8766550	54	.	.	ID=2915;Type=deletion;Left=chr8:8764151-8764587+;Right=chr8:8766092-8766550+;Distance=1941;DiscordantMatePairAlignments=54;LeftRepeat=Self chain;RightRepeat=MIRb:SINE:MIR;Self chain;LeftGenes=NM_004225:-;RightGenes=NM_004225:-;XRef=;Frequency=0.00
chr8	CG	SV	8764151	8764587	54	+	.	ID=2915;Type=deletion;Left=chr8:8764151-8764587;Right=chr8:8766092-8766550
chr8	CG	SV	8766092	8766550	54	+	.	ID=2915;Type=deletion;Left=chr8:8764151-8764587;Right=chr8:8766092-8766550
chr8	CG	SV	11282971	11285198	86	.	.	ID=2900;Type=deletion;Left=chr8:11282971-11283450+;Right=chr8:11284620-11285198+;Distance=1649;DiscordantMatePairAlignments=86;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_026814:+;RightGenes=NR_026814:+;XRef=;Frequency=0.82
chr8	CG	SV	11282971	11283450	86	+	.	ID=2900;Type=deletion;Left=chr8:11282971-11283450;Right=chr8:11284620-11285198
chr8	CG	SV	11284620	11285198	86	+	.	ID=2900;Type=deletion;Left=chr8:11282971-11283450;Right=chr8:11284620-11285198
chr8	CG	SV	16866251	16867080	20	.	.	ID=2897;Type=deletion;Left=chr8:16866251-16866728+;Right=chr8:16866621-16867080+;Distance=370;DiscordantMatePairAlignments=20;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=ERVL-B4:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs10526511 (chr8:16866250-16866620);Frequency=0.59
chr8	CG	SV	16866251	16866728	20	+	.	ID=2897;Type=deletion;Left=chr8:16866251-16866728;Right=chr8:16866621-16867080
chr8	CG	SV	16866621	16867080	20	+	.	ID=2897;Type=deletion;Left=chr8:16866251-16866728;Right=chr8:16866621-16867080
chr8	CG	SV	18498896	18500639	93	.	.	ID=2896;Type=deletion;Left=chr8:18498896-18499421+;Right=chr8:18500229-18500639+;Distance=1333;DiscordantMatePairAlignments=93;LeftRepeat=L1M3:LINE:L1;Self chain;RightRepeat=L1M3:LINE:L1;LeftGenes=NM_015310:-;NM_206909:-;RightGenes=NM_015310:-;NM_206909:-;XRef=rs71189488 (chr8:18498900-18500233);Frequency=1.00
chr8	CG	SV	18498896	18499421	93	+	.	ID=2896;Type=deletion;Left=chr8:18498896-18499421;Right=chr8:18500229-18500639
chr8	CG	SV	18500229	18500639	93	+	.	ID=2896;Type=deletion;Left=chr8:18498896-18499421;Right=chr8:18500229-18500639
chr8	CG	SV	18695738	18697112	90	.	.	ID=2895;Type=deletion;Left=chr8:18695738-18696157+;Right=chr8:18696712-18697112+;Distance=974;DiscordantMatePairAlignments=90;LeftRepeat=LTR5_Hs:LTR:ERVK;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=NM_015310:-;NM_206909:-;RightGenes=NM_015310:-;NM_206909:-;XRef=rs67390803 (chr8:18695731-18696705);Frequency=1.00
chr8	CG	SV	18695738	18696157	90	+	.	ID=2895;Type=deletion;Left=chr8:18695738-18696157;Right=chr8:18696712-18697112
chr8	CG	SV	18696712	18697112	90	+	.	ID=2895;Type=deletion;Left=chr8:18695738-18696157;Right=chr8:18696712-18697112
chr8	CG	SV	20987684	20988278	29	.	.	ID=2894;Type=deletion;Left=chr8:20987684-20988274+;Right=chr8:20988087-20988278+;Distance=403;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr8	CG	SV	20987684	20988274	29	+	.	ID=2894;Type=deletion;Left=chr8:20987684-20988274;Right=chr8:20988087-20988278
chr8	CG	SV	20988087	20988278	29	+	.	ID=2894;Type=deletion;Left=chr8:20987684-20988274;Right=chr8:20988087-20988278
chr8	CG	SV	25122602	25127126	189	.	.	ID=2893;Type=deletion;Left=chr8:25122602-25123076+;Right=chr8:25126576-25127126+;Distance=3974;DiscordantMatePairAlignments=189;LeftRepeat=;RightRepeat=;LeftGenes=NM_024940:+;RightGenes=NM_024940:+;XRef=rs71640594 (chr8:25122595-25126569);Frequency=1.00
chr8	CG	SV	25122602	25123076	189	+	.	ID=2893;Type=deletion;Left=chr8:25122602-25123076;Right=chr8:25126576-25127126
chr8	CG	SV	25126576	25127126	189	+	.	ID=2893;Type=deletion;Left=chr8:25122602-25123076;Right=chr8:25126576-25127126
chr8	CG	SV	30511833	30512540	14	.	.	ID=2892;Type=deletion;Left=chr8:30511833-30512402+;Right=chr8:30512137-30512540+;Distance=304;DiscordantMatePairAlignments=14;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001008710:+;NM_001008711:+;NM_001008712:+;NM_006867:+;RightGenes=NM_001008710:+;NM_001008711:+;NM_001008712:+;NM_006867:+;XRef=rs10705400 (chr8:30511819-30512123);Frequency=1.00
chr8	CG	SV	30511833	30512402	14	+	.	ID=2892;Type=deletion;Left=chr8:30511833-30512402;Right=chr8:30512137-30512540
chr8	CG	SV	30512137	30512540	14	+	.	ID=2892;Type=deletion;Left=chr8:30511833-30512402;Right=chr8:30512137-30512540
chr8	CG	SV	32799551	32811336	127	.	.	ID=2891;Type=deletion;Left=chr8:32799551-32800101+;Right=chr8:32810807-32811336+;Distance=11256;DiscordantMatePairAlignments=127;LeftRepeat=MLT1I:LTR:MaLR;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	32799551	32800101	127	+	.	ID=2891;Type=deletion;Left=chr8:32799551-32800101;Right=chr8:32810807-32811336
chr8	CG	SV	32810807	32811336	127	+	.	ID=2891;Type=deletion;Left=chr8:32799551-32800101;Right=chr8:32810807-32811336
chr8	CG	SV	37170042	37171555	165	.	.	ID=2890;Type=deletion;Left=chr8:37170042-37170451+;Right=chr8:37171016-37171555+;Distance=974;DiscordantMatePairAlignments=165;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66959643 (chr8:37170043-37171017);Frequency=1.00
chr8	CG	SV	37170042	37170451	165	+	.	ID=2890;Type=deletion;Left=chr8:37170042-37170451;Right=chr8:37171016-37171555
chr8	CG	SV	37171016	37171555	165	+	.	ID=2890;Type=deletion;Left=chr8:37170042-37170451;Right=chr8:37171016-37171555
chr8	CG	SV	39351231	39506603	53	.	.	ID=2889;Type=deletion;Left=chr8:39351231-39351623+;Right=chr8:39506385-39506603+;Distance=155154;DiscordantMatePairAlignments=53;LeftRepeat=AluY:SINE:Alu;RightRepeat=L1ME2:LINE:L1;Self chain;LeftGenes=NR_001448:+;RightGenes=;XRef=;Frequency=0.71
chr8	CG	SV	39351231	39351623	53	+	.	ID=2889;Type=deletion;Left=chr8:39351231-39351623;Right=chr8:39506385-39506603
chr8	CG	SV	39506385	39506603	53	+	.	ID=2889;Type=deletion;Left=chr8:39351231-39351623;Right=chr8:39506385-39506603
chr8	CG	SV	42309676	42313809	18	.	.	ID=2885;Type=deletion;Left=chr8:42309676-42310221+;Right=chr8:42313639-42313809+;Distance=3963;DiscordantMatePairAlignments=18;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67189271 (chr8:42309546-42313509);Frequency=1.00
chr8	CG	SV	42309676	42310221	18	+	.	ID=2885;Type=deletion;Left=chr8:42309676-42310221;Right=chr8:42313639-42313809
chr8	CG	SV	42313639	42313809	18	+	.	ID=2885;Type=deletion;Left=chr8:42309676-42310221;Right=chr8:42313639-42313809
chr8	CG	SV	52771664	52771982	13	.	.	ID=1511;Type=tandem-duplication;Left=chr8:52771664-52771758-;Right=chr8:52771747-52771982-;Distance=224;DiscordantMatePairAlignments=13;LeftRepeat=Tandem period 12;Tandem period 22;RightRepeat=;LeftGenes=NM_144651:-;RightGenes=NM_144651:-;XRef=;Frequency=0.88
chr8	CG	SV	52771664	52771758	13	-	.	ID=1511;Type=tandem-duplication;Left=chr8:52771664-52771758;Right=chr8:52771747-52771982
chr8	CG	SV	52771747	52771982	13	-	.	ID=1511;Type=tandem-duplication;Left=chr8:52771664-52771758;Right=chr8:52771747-52771982
chr8	CG	SV	58278344	58285598	103	.	.	ID=1510;Type=complex;Left=chr8:58278344-58278874-;Right=chr8:58285055-58285598-;Distance=6724;DiscordantMatePairAlignments=103;LeftRepeat=MER50:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58278344	58278874	103	-	.	ID=1510;Type=complex;Left=chr8:58278344-58278874;Right=chr8:58285055-58285598
chr8	CG	SV	58285055	58285598	103	-	.	ID=1510;Type=complex;Left=chr8:58278344-58278874;Right=chr8:58285055-58285598
chr8	CG	SV	58279441	58281145	51	.	.	ID=2880;Type=complex;Left=chr8:58279441-58279915+;Right=chr8:58280822-58281145+;Distance=1381;DiscordantMatePairAlignments=51;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58279441	58279915	51	+	.	ID=2880;Type=complex;Left=chr8:58279441-58279915;Right=chr8:58280822-58281145
chr8	CG	SV	58280822	58281145	51	+	.	ID=2880;Type=complex;Left=chr8:58279441-58279915;Right=chr8:58280822-58281145
chr8	CG	SV	58280390	58290572	98	.	.	ID=1509;Type=complex;Left=chr8:58280390-58280822-;Right=chr8:58290083-58290572-;Distance=9750;DiscordantMatePairAlignments=98;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58280390	58280822	98	-	.	ID=1509;Type=complex;Left=chr8:58280390-58280822;Right=chr8:58290083-58290572
chr8	CG	SV	58290083	58290572	98	-	.	ID=1509;Type=complex;Left=chr8:58280390-58280822;Right=chr8:58290083-58290572
chr8	CG	SV	58285605	58290415	315	.	.	ID=2878;Type=complex;Left=chr8:58285605-58286167+;Right=chr8:58289986-58290415+;Distance=4381;DiscordantMatePairAlignments=315;LeftRepeat=Self chain;RightRepeat=MER50:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58285605	58286167	315	+	.	ID=2878;Type=complex;Left=chr8:58285605-58286167;Right=chr8:58289986-58290415
chr8	CG	SV	58289986	58290415	315	+	.	ID=2878;Type=complex;Left=chr8:58285605-58286167;Right=chr8:58289986-58290415
chr8	CG	SV	59241018	59241913	12	.	.	ID=2877;Type=deletion;Left=chr8:59241018-59241498+;Right=chr8:59241354-59241913+;Distance=336;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67243806 (chr8:59241018-59241354);Frequency=1.00
chr8	CG	SV	59241018	59241498	12	+	.	ID=2877;Type=deletion;Left=chr8:59241018-59241498;Right=chr8:59241354-59241913
chr8	CG	SV	59241354	59241913	12	+	.	ID=2877;Type=deletion;Left=chr8:59241018-59241498;Right=chr8:59241354-59241913
chr8	CG	SV	61367551	61368450	12	.	.	ID=2876;Type=deletion;Left=chr8:61367551-61368043+;Right=chr8:61367868-61368450+;Distance=317;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs33938822 (chr8:61367551-61367868);Frequency=0.76
chr8	CG	SV	61367551	61368043	12	+	.	ID=2876;Type=deletion;Left=chr8:61367551-61368043;Right=chr8:61367868-61368450
chr8	CG	SV	61367868	61368450	12	+	.	ID=2876;Type=deletion;Left=chr8:61367551-61368043;Right=chr8:61367868-61368450
chr8	CG	SV	62197914	62198868	42	.	.	ID=2875;Type=deletion;Left=chr8:62197914-62198411+;Right=chr8:62198446-62198868+;Distance=532;DiscordantMatePairAlignments=42;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr8	CG	SV	62197914	62198411	42	+	.	ID=2875;Type=deletion;Left=chr8:62197914-62198411;Right=chr8:62198446-62198868
chr8	CG	SV	62198446	62198868	42	+	.	ID=2875;Type=deletion;Left=chr8:62197914-62198411;Right=chr8:62198446-62198868
chr8	CG	SV	73950329	73956767	73	.	.	ID=2872;Type=deletion;Left=chr8:73950329-73950758+;Right=chr8:73956387-73956767+;Distance=6058;DiscordantMatePairAlignments=73;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_004770:+;RightGenes=NM_004770:+;XRef=rs71640573 (chr8:73950319-73956377);Frequency=1.00
chr8	CG	SV	73950329	73950758	73	+	.	ID=2872;Type=deletion;Left=chr8:73950329-73950758;Right=chr8:73956387-73956767
chr8	CG	SV	73956387	73956767	73	+	.	ID=2872;Type=deletion;Left=chr8:73950329-73950758;Right=chr8:73956387-73956767
chr8	CG	SV	77499940	77501525	73	.	.	ID=2869;Type=deletion;Left=chr8:77499940-77500370+;Right=chr8:77500985-77501525+;Distance=1045;DiscordantMatePairAlignments=73;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66858940 (chr8:77499940-77500985);Frequency=0.94
chr8	CG	SV	77499940	77500370	73	+	.	ID=2869;Type=deletion;Left=chr8:77499940-77500370;Right=chr8:77500985-77501525
chr8	CG	SV	77500985	77501525	73	+	.	ID=2869;Type=deletion;Left=chr8:77499940-77500370;Right=chr8:77500985-77501525
chr8	CG	SV	97167264	97168182	22	.	.	ID=2866;Type=deletion;Left=chr8:97167264-97167885+;Right=chr8:97167616-97168182+;Distance=352;DiscordantMatePairAlignments=22;LeftRepeat=AluY:SINE:Alu;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs10528502 (chr8:97167264-97167616);Frequency=1.00
chr8	CG	SV	97167264	97167885	22	+	.	ID=2866;Type=deletion;Left=chr8:97167264-97167885;Right=chr8:97167616-97168182
chr8	CG	SV	97167616	97168182	22	+	.	ID=2866;Type=deletion;Left=chr8:97167264-97167885;Right=chr8:97167616-97168182
chr8	CG	SV	108638469	108638539	11	.	.	ID=4241;Type=probable-inversion;Left=chr8:108638469-108638889+;Right=chr8:108638467-108638539-;Distance=70;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	108638469	108638889	11	+	.	ID=4241;Type=probable-inversion;Left=chr8:108638469-108638889;Right=chr8:108638467-108638539
chr8	CG	SV	108638467	108638539	11	+	.	ID=4241;Type=probable-inversion;Left=chr8:108638469-108638889;Right=chr8:108638467-108638539
chr8	CG	SV	112332555	112333058	48	+	.	ID=2222;Type=complex;Left=chr8:112332555-112333058+;Right=chrX:123453760-123454411+;Distance=;DiscordantMatePairAlignments=48;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_001163278:-;NM_001163279:-;NM_014253:-;XRef=;Frequency=0.00
chrX	CG	SV	123453760	123454411	48	+	.	ID=2222;Type=complex;Left=chr8:112332555-112333058+;Right=chrX:123453760-123454411+;Distance=;DiscordantMatePairAlignments=48;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_001163278:-;NM_001163279:-;NM_014253:-;XRef=;Frequency=0.00
chr8	CG	SV	112332082	112332567	46	-	.	ID=1117;Type=complex;Left=chr8:112332082-112332567-;Right=chrX:123453300-123453735-;Distance=;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_001163278:-;NM_001163279:-;NM_014253:-;XRef=;Frequency=0.00
chrX	CG	SV	123453300	123453735	46	-	.	ID=1117;Type=complex;Left=chr8:112332082-112332567-;Right=chrX:123453300-123453735-;Distance=;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_001163278:-;NM_001163279:-;NM_014253:-;XRef=;Frequency=0.00
chr8	CG	SV	112363228	112366835	38	.	.	ID=2861;Type=deletion;Left=chr8:112363228-112363672+;Right=chr8:112366316-112366835+;Distance=3088;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=MLT-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67753424 (chr8:112363228-112366316);Frequency=0.88
chr8	CG	SV	112363228	112363672	38	+	.	ID=2861;Type=deletion;Left=chr8:112363228-112363672;Right=chr8:112366316-112366835
chr8	CG	SV	112366316	112366835	38	+	.	ID=2861;Type=deletion;Left=chr8:112363228-112363672;Right=chr8:112366316-112366835
chr8	CG	SV	113154612	113155472	19	.	.	ID=2858;Type=deletion;Left=chr8:113154612-113155108+;Right=chr8:113154942-113155472+;Distance=330;DiscordantMatePairAlignments=19;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=L1M2:LINE:L1;LeftGenes=;RightGenes=;XRef=rs6150764 (chr8:113154612-113154942);Frequency=1.00
chr8	CG	SV	113154612	113155108	19	+	.	ID=2858;Type=deletion;Left=chr8:113154612-113155108;Right=chr8:113154942-113155472
chr8	CG	SV	113154942	113155472	19	+	.	ID=2858;Type=deletion;Left=chr8:113154612-113155108;Right=chr8:113154942-113155472
chr8	CG	SV	118942919	118945109	51	.	.	ID=2855;Type=deletion;Left=chr8:118942919-118943241+;Right=chr8:118944774-118945109+;Distance=1855;DiscordantMatePairAlignments=51;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_000127:-;RightGenes=NM_000127:-;XRef=;Frequency=0.59
chr8	CG	SV	118942919	118943241	51	+	.	ID=2855;Type=deletion;Left=chr8:118942919-118943241;Right=chr8:118944774-118945109
chr8	CG	SV	118944774	118945109	51	+	.	ID=2855;Type=deletion;Left=chr8:118942919-118943241;Right=chr8:118944774-118945109
chr8	CG	SV	126664311	126670924	157	.	.	ID=2853;Type=deletion;Left=chr8:126664311-126664746+;Right=chr8:126670324-126670924+;Distance=6013;DiscordantMatePairAlignments=157;LeftRepeat=;RightRepeat=MER113:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs67657993 (chr8:126664311-126670324);Frequency=1.00
chr8	CG	SV	126664311	126664746	157	+	.	ID=2853;Type=deletion;Left=chr8:126664311-126664746;Right=chr8:126670324-126670924
chr8	CG	SV	126670324	126670924	157	+	.	ID=2853;Type=deletion;Left=chr8:126664311-126664746;Right=chr8:126670324-126670924
chr8	CG	SV	127261392	127264215	34	.	.	ID=2852;Type=deletion;Left=chr8:127261392-127261873+;Right=chr8:127263756-127264215+;Distance=2364;DiscordantMatePairAlignments=34;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72273669 (chr8:127261387-127263752);Frequency=0.59
chr8	CG	SV	127261392	127261873	34	+	.	ID=2852;Type=deletion;Left=chr8:127261392-127261873;Right=chr8:127263756-127264215
chr8	CG	SV	127263756	127264215	34	+	.	ID=2852;Type=deletion;Left=chr8:127261392-127261873;Right=chr8:127263756-127264215
chr8	CG	SV	129534340	129540918	135	.	.	ID=2851;Type=deletion;Left=chr8:129534340-129534883+;Right=chr8:129540453-129540918+;Distance=6113;DiscordantMatePairAlignments=135;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67264625 (chr8:129534335-129540448);Frequency=1.00
chr8	CG	SV	129534340	129534883	135	+	.	ID=2851;Type=deletion;Left=chr8:129534340-129534883;Right=chr8:129540453-129540918
chr8	CG	SV	129540453	129540918	135	+	.	ID=2851;Type=deletion;Left=chr8:129534340-129534883;Right=chr8:129540453-129540918
chr8	CG	SV	131919931	131922380	38	.	.	ID=2850;Type=deletion;Left=chr8:131919931-131920387+;Right=chr8:131921920-131922380+;Distance=1989;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=;LeftGenes=NM_001115:-;RightGenes=NM_001115:-;XRef=rs71812592 (chr8:131919932-131921920);Frequency=0.47
chr8	CG	SV	131919931	131920387	38	+	.	ID=2850;Type=deletion;Left=chr8:131919931-131920387;Right=chr8:131921920-131922380
chr8	CG	SV	131921920	131922380	38	+	.	ID=2850;Type=deletion;Left=chr8:131919931-131920387;Right=chr8:131921920-131922380
chr8	CG	SV	131978744	131979823	13	.	.	ID=827;Type=probable-inversion;Left=chr8:131978744-131979118-;Right=chr8:131979750-131979823+;Distance=632;DiscordantMatePairAlignments=13;LeftRepeat=Tandem period 8;RightRepeat=;LeftGenes=NM_001115:-;RightGenes=NM_001115:-;XRef=;Frequency=0.94
chr8	CG	SV	131978744	131979118	13	-	.	ID=827;Type=probable-inversion;Left=chr8:131978744-131979118;Right=chr8:131979750-131979823
chr8	CG	SV	131979750	131979823	13	-	.	ID=827;Type=probable-inversion;Left=chr8:131978744-131979118;Right=chr8:131979750-131979823
chr8	CG	SV	135152105	135158632	23	.	.	ID=2849;Type=deletion;Left=chr8:135152105-135152554+;Right=chr8:135158207-135158632+;Distance=6102;DiscordantMatePairAlignments=23;LeftRepeat=L1MEe:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66697932 (chr8:135152111-135158213);Frequency=0.53
chr8	CG	SV	135152105	135152554	23	+	.	ID=2849;Type=deletion;Left=chr8:135152105-135152554;Right=chr8:135158207-135158632
chr8	CG	SV	135158207	135158632	23	+	.	ID=2849;Type=deletion;Left=chr8:135152105-135152554;Right=chr8:135158207-135158632
chr8	CG	SV	137229379	137233540	109	.	.	ID=2848;Type=deletion;Left=chr8:137229379-137229837+;Right=chr8:137233082-137233540+;Distance=3703;DiscordantMatePairAlignments=109;LeftRepeat=ERVL-E:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67361622 (chr8:137229377-137233080);Frequency=1.00
chr8	CG	SV	137229379	137229837	109	+	.	ID=2848;Type=deletion;Left=chr8:137229379-137229837;Right=chr8:137233082-137233540
chr8	CG	SV	137233082	137233540	109	+	.	ID=2848;Type=deletion;Left=chr8:137229379-137229837;Right=chr8:137233082-137233540
chr8	CG	SV	138812149	138813455	130	.	.	ID=2847;Type=deletion;Left=chr8:138812149-138812671+;Right=chr8:138813045-138813455+;Distance=896;DiscordantMatePairAlignments=130;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67866144 (chr8:138812147-138813043);Frequency=1.00
chr8	CG	SV	138812149	138812671	130	+	.	ID=2847;Type=deletion;Left=chr8:138812149-138812671;Right=chr8:138813045-138813455
chr8	CG	SV	138813045	138813455	130	+	.	ID=2847;Type=deletion;Left=chr8:138812149-138812671;Right=chr8:138813045-138813455
chr8	CG	SV	143395366	143396955	43	.	.	ID=2842;Type=deletion;Left=chr8:143395366-143395783+;Right=chr8:143396600-143396955+;Distance=1234;DiscordantMatePairAlignments=43;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 36;Tandem period 72;LeftGenes=NM_145003:-;RightGenes=NM_145003:-;XRef=;Frequency=0.00
chr8	CG	SV	143395366	143395783	43	+	.	ID=2842;Type=deletion;Left=chr8:143395366-143395783;Right=chr8:143396600-143396955
chr8	CG	SV	143396600	143396955	43	+	.	ID=2842;Type=deletion;Left=chr8:143395366-143395783;Right=chr8:143396600-143396955
chr8	CG	SV	144127966	144128835	16	.	.	ID=2841;Type=deletion;Left=chr8:144127966-144128414+;Right=chr8:144128539-144128835+;Distance=573;DiscordantMatePairAlignments=16;LeftRepeat=(CAGGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 15;Tandem period 31;Tandem period 46;RightRepeat=Self chain;Tandem period 15;Tandem period 31;Tandem period 46;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr8	CG	SV	144127966	144128414	16	+	.	ID=2841;Type=deletion;Left=chr8:144127966-144128414;Right=chr8:144128539-144128835
chr8	CG	SV	144128539	144128835	16	+	.	ID=2841;Type=deletion;Left=chr8:144127966-144128414;Right=chr8:144128539-144128835
chr8	CG	SV	144705210	144707836	79	.	.	ID=2840;Type=deletion;Left=chr8:144705210-144705681+;Right=chr8:144707385-144707836+;Distance=2175;DiscordantMatePairAlignments=79;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=NM_001166237:+;XRef=;Frequency=0.18
chr8	CG	SV	144705210	144705681	79	+	.	ID=2840;Type=deletion;Left=chr8:144705210-144705681;Right=chr8:144707385-144707836
chr8	CG	SV	144707385	144707836	79	+	.	ID=2840;Type=deletion;Left=chr8:144705210-144705681;Right=chr8:144707385-144707836
chr8	CG	SV	146027877	146029088	23	.	.	ID=2837;Type=deletion;Left=chr8:146027877-146028412+;Right=chr8:146028688-146029088+;Distance=811;DiscordantMatePairAlignments=23;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_003416:+;RightGenes=NM_003416:+;XRef=rs71976446 (chr8:146027825-146028636);Frequency=0.82
chr8	CG	SV	146027877	146028412	23	+	.	ID=2837;Type=deletion;Left=chr8:146027877-146028412;Right=chr8:146028688-146029088
chr8	CG	SV	146028688	146029088	23	+	.	ID=2837;Type=deletion;Left=chr8:146027877-146028412;Right=chr8:146028688-146029088
chr9	CG	SV	4366421	4368037	31	.	.	ID=2836;Type=deletion;Left=chr9:4366421-4367040+;Right=chr9:4367648-4368037+;Distance=1227;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr9	CG	SV	4366421	4367040	31	+	.	ID=2836;Type=deletion;Left=chr9:4366421-4367040;Right=chr9:4367648-4368037
chr9	CG	SV	4367648	4368037	31	+	.	ID=2836;Type=deletion;Left=chr9:4366421-4367040;Right=chr9:4367648-4368037
chr9	CG	SV	8060272	8061498	21	.	.	ID=2835;Type=deletion;Left=chr9:8060272-8060585+;Right=chr9:8061089-8061498+;Distance=817;DiscordantMatePairAlignments=21;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1PA16:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	8060272	8060585	21	+	.	ID=2835;Type=deletion;Left=chr9:8060272-8060585;Right=chr9:8061089-8061498
chr9	CG	SV	8061089	8061498	21	+	.	ID=2835;Type=deletion;Left=chr9:8060272-8060585;Right=chr9:8061089-8061498
chr9	CG	SV	15805308	15812022	13	.	.	ID=2832;Type=deletion;Left=chr9:15805308-15805800+;Right=chr9:15811942-15812022+;Distance=6634;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=L1PA4:LINE:L1;LeftGenes=NM_173550:+;RightGenes=NM_173550:+;XRef=;Frequency=0.65
chr9	CG	SV	15805308	15805800	13	+	.	ID=2832;Type=deletion;Left=chr9:15805308-15805800;Right=chr9:15811942-15812022
chr9	CG	SV	15811942	15812022	13	+	.	ID=2832;Type=deletion;Left=chr9:15805308-15805800;Right=chr9:15811942-15812022
chr9	CG	SV	16379407	16380261	18	.	.	ID=2831;Type=deletion;Left=chr9:16379407-16379956+;Right=chr9:16379743-16380261+;Distance=336;DiscordantMatePairAlignments=18;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs34716958 (chr9:16379394-16379730);Frequency=1.00
chr9	CG	SV	16379407	16379956	18	+	.	ID=2831;Type=deletion;Left=chr9:16379407-16379956;Right=chr9:16379743-16380261
chr9	CG	SV	16379743	16380261	18	+	.	ID=2831;Type=deletion;Left=chr9:16379407-16379956;Right=chr9:16379743-16380261
chr9	CG	SV	33203181	33204243	32	.	.	ID=2825;Type=deletion;Left=chr9:33203181-33203657+;Right=chr9:33204040-33204243+;Distance=859;DiscordantMatePairAlignments=32;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66854519 (chr9:33203052-33203911);Frequency=0.94
chr9	CG	SV	33203181	33203657	32	+	.	ID=2825;Type=deletion;Left=chr9:33203181-33203657;Right=chr9:33204040-33204243
chr9	CG	SV	33204040	33204243	32	+	.	ID=2825;Type=deletion;Left=chr9:33203181-33203657;Right=chr9:33204040-33204243
chr9	CG	SV	33413368	33415151	14	.	.	ID=2824;Type=deletion;Left=chr9:33413368-33413843+;Right=chr9:33414661-33415151+;Distance=1293;DiscordantMatePairAlignments=14;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=NR_003667:-;RightGenes=NR_003667:-;XRef=;Frequency=0.47
chr9	CG	SV	33413368	33413843	14	+	.	ID=2824;Type=deletion;Left=chr9:33413368-33413843;Right=chr9:33414661-33415151
chr9	CG	SV	33414661	33415151	14	+	.	ID=2824;Type=deletion;Left=chr9:33413368-33413843;Right=chr9:33414661-33415151
chr9	CG	SV	33563403	33564598	15	.	.	ID=2823;Type=deletion;Left=chr9:33563403-33563777+;Right=chr9:33564215-33564598+;Distance=812;DiscordantMatePairAlignments=15;LeftRepeat=SegDup;Self chain;RightRepeat=HSAT5:Satellite:Satellite;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr9	CG	SV	33563403	33563777	15	+	.	ID=2823;Type=deletion;Left=chr9:33563403-33563777;Right=chr9:33564215-33564598
chr9	CG	SV	33564215	33564598	15	+	.	ID=2823;Type=deletion;Left=chr9:33563403-33563777;Right=chr9:33564215-33564598
chr9	CG	SV	33613781	33614218	14	-	.	ID=771;Type=interchromosomal;Left=chr9:33613781-33614218-;Right=chr16:19502018-19502341+;Distance=;DiscordantMatePairAlignments=14;LeftRepeat=SegDup;Self chain;RightRepeat=L1MB8:LINE:L1;Self chain;LeftGenes=;RightGenes=NM_020314:+;XRef=;Frequency=0.00
chr16	CG	SV	19502018	19502341	14	-	.	ID=771;Type=interchromosomal;Left=chr9:33613781-33614218-;Right=chr16:19502018-19502341+;Distance=;DiscordantMatePairAlignments=14;LeftRepeat=SegDup;Self chain;RightRepeat=L1MB8:LINE:L1;Self chain;LeftGenes=;RightGenes=NM_020314:+;XRef=;Frequency=0.00
chr9	CG	SV	34670980	34671976	18	.	.	ID=1503;Type=tandem-duplication;Left=chr9:34670980-34671480-;Right=chr9:34671829-34671976-;Distance=496;DiscordantMatePairAlignments=18;LeftRepeat=MLT1A:LTR:MaLR;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	34670980	34671480	18	-	.	ID=1503;Type=tandem-duplication;Left=chr9:34670980-34671480;Right=chr9:34671829-34671976
chr9	CG	SV	34671829	34671976	18	-	.	ID=1503;Type=tandem-duplication;Left=chr9:34670980-34671480;Right=chr9:34671829-34671976
chr9	CG	SV	36352905	36354356	75	.	.	ID=2822;Type=deletion;Left=chr9:36352905-36353419+;Right=chr9:36354103-36354356+;Distance=1198;DiscordantMatePairAlignments=75;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=NM_022781:-;NM_194328:-;NM_194329:-;NM_194330:-;NM_194332:-;RightGenes=NM_022781:-;NM_194328:-;NM_194329:-;NM_194330:-;NM_194332:-;XRef=;Frequency=0.88
chr9	CG	SV	36352905	36353419	75	+	.	ID=2822;Type=deletion;Left=chr9:36352905-36353419;Right=chr9:36354103-36354356
chr9	CG	SV	36354103	36354356	75	+	.	ID=2822;Type=deletion;Left=chr9:36352905-36353419;Right=chr9:36354103-36354356
chr9	CG	SV	42405904	44010782	49	.	.	ID=826;Type=complex;Left=chr9:42405904-42405991-;Right=chr9:44010660-44010782+;Distance=1604669;DiscordantMatePairAlignments=49;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=SegDup;Self chain;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	42405904	42405991	49	-	.	ID=826;Type=complex;Left=chr9:42405904-42405991;Right=chr9:44010660-44010782
chr9	CG	SV	44010660	44010782	49	-	.	ID=826;Type=complex;Left=chr9:42405904-42405991;Right=chr9:44010660-44010782
chr9	CG	SV	44010562	44010788	143	.	.	ID=1501;Type=complex;Left=chr9:44010562-44010674-;Right=chr9:44010678-44010788-;Distance=114;DiscordantMatePairAlignments=143;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=AluSg:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	44010562	44010674	143	-	.	ID=1501;Type=complex;Left=chr9:44010562-44010674;Right=chr9:44010678-44010788
chr9	CG	SV	44010678	44010788	143	-	.	ID=1501;Type=complex;Left=chr9:44010562-44010674;Right=chr9:44010678-44010788
chr9	CG	SV	66195161	67904254	12	.	.	ID=823;Type=probable-inversion;Left=chr9:66195161-66195511-;Right=chr9:67903916-67904254+;Distance=1708405;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	66195161	66195511	12	-	.	ID=823;Type=probable-inversion;Left=chr9:66195161-66195511;Right=chr9:67903916-67904254
chr9	CG	SV	67903916	67904254	12	-	.	ID=823;Type=probable-inversion;Left=chr9:66195161-66195511;Right=chr9:67903916-67904254
chr9	CG	SV	67912569	67914075	27	.	.	ID=2819;Type=deletion;Left=chr9:67912569-67913115+;Right=chr9:67913643-67914075+;Distance=1074;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	67912569	67913115	27	+	.	ID=2819;Type=deletion;Left=chr9:67912569-67913115;Right=chr9:67913643-67914075
chr9	CG	SV	67913643	67914075	27	+	.	ID=2819;Type=deletion;Left=chr9:67912569-67913115;Right=chr9:67913643-67914075
chr9	CG	SV	68286251	68287666	16	.	.	ID=2817;Type=deletion;Left=chr9:68286251-68286683+;Right=chr9:68287398-68287666+;Distance=1147;DiscordantMatePairAlignments=16;LeftRepeat=CER:Satellite:Satellite;SegDup;Self chain;Tandem period 144;Tandem period 48;Tandem period 96;RightRepeat=CER:Satellite:Satellite;SegDup;Self chain;Tandem period 144;Tandem period 48;Tandem period 96;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	68286251	68286683	16	+	.	ID=2817;Type=deletion;Left=chr9:68286251-68286683;Right=chr9:68287398-68287666
chr9	CG	SV	68287398	68287666	16	+	.	ID=2817;Type=deletion;Left=chr9:68286251-68286683;Right=chr9:68287398-68287666
chr9	CG	SV	70994347	70995224	118	.	.	ID=2816;Type=deletion;Left=chr9:70994347-70994912+;Right=chr9:70994821-70995224+;Distance=474;DiscordantMatePairAlignments=118;LeftRepeat=FAM:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_004817:+;NM_201629:+;RightGenes=NM_004817:+;NM_201629:+;XRef=rs71843308 (chr9:70994347-70994821);Frequency=0.65
chr9	CG	SV	70994347	70994912	118	+	.	ID=2816;Type=deletion;Left=chr9:70994347-70994912;Right=chr9:70994821-70995224
chr9	CG	SV	70994821	70995224	118	+	.	ID=2816;Type=deletion;Left=chr9:70994347-70994912;Right=chr9:70994821-70995224
chr9	CG	SV	86729628	89227007	134	.	.	ID=1491;Type=tandem-duplication;Left=chr9:86729628-86730225-;Right=chr9:89226552-89227007-;Distance=2496782;DiscordantMatePairAlignments=134;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_001018064:+;NM_006180:+;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	86729628	86730225	134	-	.	ID=1491;Type=tandem-duplication;Left=chr9:86729628-86730225;Right=chr9:89226552-89227007
chr9	CG	SV	89226552	89227007	134	-	.	ID=1491;Type=tandem-duplication;Left=chr9:86729628-86730225;Right=chr9:89226552-89227007
chr9	CG	SV	86965113	86966265	31	.	.	ID=2811;Type=deletion;Left=chr9:86965113-86965636+;Right=chr9:86966084-86966265+;Distance=971;DiscordantMatePairAlignments=31;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72108290 (chr9:86964897-86965868);Frequency=0.35
chr9	CG	SV	86965113	86965636	31	+	.	ID=2811;Type=deletion;Left=chr9:86965113-86965636;Right=chr9:86966084-86966265
chr9	CG	SV	86966084	86966265	31	+	.	ID=2811;Type=deletion;Left=chr9:86965113-86965636;Right=chr9:86966084-86966265
chr9	CG	SV	90048816	90051370	65	.	.	ID=2808;Type=deletion;Left=chr9:90048816-90049223+;Right=chr9:90050796-90051370+;Distance=1980;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=MER21C:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs71317224 (chr9:90048816-90050796);Frequency=1.00
chr9	CG	SV	90048816	90049223	65	+	.	ID=2808;Type=deletion;Left=chr9:90048816-90049223;Right=chr9:90050796-90051370
chr9	CG	SV	90050796	90051370	65	+	.	ID=2808;Type=deletion;Left=chr9:90048816-90049223;Right=chr9:90050796-90051370
chr9	CG	SV	90482105	90482876	29	.	.	ID=2807;Type=deletion;Left=chr9:90482105-90482724+;Right=chr9:90482501-90482876+;Distance=396;DiscordantMatePairAlignments=29;LeftRepeat=(ATGGTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 14;Tandem period 18;RightRepeat=(ATGGTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 18;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr9	CG	SV	90482105	90482724	29	+	.	ID=2807;Type=deletion;Left=chr9:90482105-90482724;Right=chr9:90482501-90482876
chr9	CG	SV	90482501	90482876	29	+	.	ID=2807;Type=deletion;Left=chr9:90482105-90482724;Right=chr9:90482501-90482876
chr9	CG	SV	95510176	95511730	168	.	.	ID=2806;Type=deletion;Left=chr9:95510176-95510749+;Right=chr9:95511286-95511730+;Distance=1110;DiscordantMatePairAlignments=168;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67273187 (chr9:95510176-95511286);Frequency=0.29
chr9	CG	SV	95510176	95510749	168	+	.	ID=2806;Type=deletion;Left=chr9:95510176-95510749;Right=chr9:95511286-95511730
chr9	CG	SV	95511286	95511730	168	+	.	ID=2806;Type=deletion;Left=chr9:95510176-95510749;Right=chr9:95511286-95511730
chr9	CG	SV	99800896	99801675	12	.	.	ID=2804;Type=deletion;Left=chr9:99800896-99801474+;Right=chr9:99801226-99801675+;Distance=330;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_006401:+;RightGenes=NM_006401:+;XRef=rs10522375 (chr9:99800879-99801209);Frequency=0.88
chr9	CG	SV	99800896	99801474	12	+	.	ID=2804;Type=deletion;Left=chr9:99800896-99801474;Right=chr9:99801226-99801675
chr9	CG	SV	99801226	99801675	12	+	.	ID=2804;Type=deletion;Left=chr9:99800896-99801474;Right=chr9:99801226-99801675
chr9	CG	SV	100348869	100352005	109	.	.	ID=2802;Type=deletion;Left=chr9:100348869-100349267+;Right=chr9:100351490-100352005+;Distance=2621;DiscordantMatePairAlignments=109;LeftRepeat=;RightRepeat=;LeftGenes=NM_005458:-;RightGenes=NM_005458:-;XRef=rs71885665 (chr9:100348864-100351485);Frequency=0.82
chr9	CG	SV	100348869	100349267	109	+	.	ID=2802;Type=deletion;Left=chr9:100348869-100349267;Right=chr9:100351490-100352005
chr9	CG	SV	100351490	100352005	109	+	.	ID=2802;Type=deletion;Left=chr9:100348869-100349267;Right=chr9:100351490-100352005
chr9	CG	SV	103259526	103260745	114	.	.	ID=2801;Type=deletion;Left=chr9:103259526-103259918+;Right=chr9:103260209-103260745+;Distance=683;DiscordantMatePairAlignments=114;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr9	CG	SV	103259526	103259918	114	+	.	ID=2801;Type=deletion;Left=chr9:103259526-103259918;Right=chr9:103260209-103260745
chr9	CG	SV	103260209	103260745	114	+	.	ID=2801;Type=deletion;Left=chr9:103259526-103259918;Right=chr9:103260209-103260745
chr9	CG	SV	103483787	103484817	93	.	.	ID=2800;Type=deletion;Left=chr9:103483787-103484264+;Right=chr9:103484553-103484817+;Distance=766;DiscordantMatePairAlignments=93;LeftRepeat=;RightRepeat=;LeftGenes=NM_133445:-;RightGenes=NM_133445:-;XRef=rs66469119 (chr9:103483782-103484548);Frequency=1.00
chr9	CG	SV	103483787	103484264	93	+	.	ID=2800;Type=deletion;Left=chr9:103483787-103484264;Right=chr9:103484553-103484817
chr9	CG	SV	103484553	103484817	93	+	.	ID=2800;Type=deletion;Left=chr9:103483787-103484264;Right=chr9:103484553-103484817
chr9	CG	SV	118516898	118517825	23	.	.	ID=2797;Type=deletion;Left=chr9:118516898-118517193+;Right=chr9:118517232-118517825+;Distance=334;DiscordantMatePairAlignments=23;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_014010:-;NM_198186:-;NM_198187:-;RightGenes=NM_014010:-;NM_198186:-;NM_198187:-;XRef=rs72440176 (chr9:118516898-118517232);Frequency=0.94
chr9	CG	SV	118516898	118517193	23	+	.	ID=2797;Type=deletion;Left=chr9:118516898-118517193;Right=chr9:118517232-118517825
chr9	CG	SV	118517232	118517825	23	+	.	ID=2797;Type=deletion;Left=chr9:118516898-118517193;Right=chr9:118517232-118517825
chr9	CG	SV	121571666	121572392	11	.	.	ID=2796;Type=deletion;Left=chr9:121571666-121572233+;Right=chr9:121571984-121572392+;Distance=318;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10529675 (chr9:121571655-121571973);Frequency=1.00
chr9	CG	SV	121571666	121572233	11	+	.	ID=2796;Type=deletion;Left=chr9:121571666-121572233;Right=chr9:121571984-121572392
chr9	CG	SV	121571984	121572392	11	+	.	ID=2796;Type=deletion;Left=chr9:121571666-121572233;Right=chr9:121571984-121572392
chr9	CG	SV	123266111	123267640	225	.	.	ID=1488;Type=tandem-duplication;Left=chr9:123266111-123266725-;Right=chr9:123267126-123267640-;Distance=915;DiscordantMatePairAlignments=225;LeftRepeat=(CAAAAA)n:Simple_repeat:Simple_repeat;Tandem AAAACA;Tandem CAAAA;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=NR_003191:-;RightGenes=NR_003191:-;XRef=;Frequency=0.24
chr9	CG	SV	123266111	123266725	225	-	.	ID=1488;Type=tandem-duplication;Left=chr9:123266111-123266725;Right=chr9:123267126-123267640
chr9	CG	SV	123267126	123267640	225	-	.	ID=1488;Type=tandem-duplication;Left=chr9:123266111-123266725;Right=chr9:123267126-123267640
chr9	CG	SV	125033468	125197388	112	.	.	ID=1487;Type=tandem-duplication;Left=chr9:125033468-125033976-;Right=chr9:125196755-125197388-;Distance=163412;DiscordantMatePairAlignments=112;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_018387:-;RightGenes=NM_020946:-;XRef=;Frequency=0.00
chr9	CG	SV	125033468	125033976	112	-	.	ID=1487;Type=tandem-duplication;Left=chr9:125033468-125033976;Right=chr9:125196755-125197388
chr9	CG	SV	125196755	125197388	112	-	.	ID=1487;Type=tandem-duplication;Left=chr9:125033468-125033976;Right=chr9:125196755-125197388
chr9	CG	SV	129941326	129942327	12	.	.	ID=2795;Type=deletion;Left=chr9:129941326-129941931+;Right=chr9:129941966-129942327+;Distance=640;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;Tandem period 159;Tandem period 80;RightRepeat=SATR1:Satellite:Satellite;SegDup;Self chain;Tandem period 159;Tandem period 80;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr9	CG	SV	129941326	129941931	12	+	.	ID=2795;Type=deletion;Left=chr9:129941326-129941931;Right=chr9:129941966-129942327
chr9	CG	SV	129941966	129942327	12	+	.	ID=2795;Type=deletion;Left=chr9:129941326-129941931;Right=chr9:129941966-129942327
chr9	CG	SV	130413813	130414253	18	-	.	ID=1280;Type=interchromosomal;Left=chr9:130413813-130414253-;Right=chr15:73883920-73884413-;Distance=;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;RightRepeat=L1MA5:LINE:L1;SegDup;Self chain;LeftGenes=NM_001130438:+;NM_003127:+;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	73883920	73884413	18	-	.	ID=1280;Type=interchromosomal;Left=chr9:130413813-130414253-;Right=chr15:73883920-73884413-;Distance=;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;RightRepeat=L1MA5:LINE:L1;SegDup;Self chain;LeftGenes=NM_001130438:+;NM_003127:+;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	131066521	131068303	12	.	.	ID=2793;Type=deletion;Left=chr9:131066521-131066905+;Right=chr9:131067905-131068303+;Distance=1384;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71317253 (chr9:131066521-131067905);Frequency=0.59
chr9	CG	SV	131066521	131066905	12	+	.	ID=2793;Type=deletion;Left=chr9:131066521-131066905;Right=chr9:131067905-131068303
chr9	CG	SV	131067905	131068303	12	+	.	ID=2793;Type=deletion;Left=chr9:131066521-131066905;Right=chr9:131067905-131068303
chr9	CG	SV	131198053	131198966	22	.	.	ID=1485;Type=tandem-duplication;Left=chr9:131198053-131198499-;Right=chr9:131198546-131198966-;Distance=467;DiscordantMatePairAlignments=22;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;Tandem GGAT;Tandem period 12;Tandem period 23;RightRepeat=Self chain;Tandem period 12;Tandem period 23;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	131198053	131198499	22	-	.	ID=1485;Type=tandem-duplication;Left=chr9:131198053-131198499;Right=chr9:131198546-131198966
chr9	CG	SV	131198546	131198966	22	-	.	ID=1485;Type=tandem-duplication;Left=chr9:131198053-131198499;Right=chr9:131198546-131198966
chr9	CG	SV	134748909	134750056	80	.	.	ID=2791;Type=distal-duplication;Left=chr9:134748909-134749431+;Right=chr9:134749953-134750056+;Distance=1044;DiscordantMatePairAlignments=80;LeftRepeat=;RightRepeat=;LeftGenes=NM_018956:+;RightGenes=NM_018956:+;XRef=;Frequency=0.35
chr9	CG	SV	134748909	134749431	80	+	.	ID=2791;Type=distal-duplication;Left=chr9:134748909-134749431;Right=chr9:134749953-134750056
chr9	CG	SV	134749953	134750056	80	+	.	ID=2791;Type=distal-duplication;Left=chr9:134748909-134749431;Right=chr9:134749953-134750056
chr9	CG	SV	134748404	134750089	50	.	.	ID=1484;Type=distal-duplication;Left=chr9:134748404-134748911-;Right=chr9:134749950-134750089-;Distance=1178;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_018956:+;RightGenes=NM_018956:+;XRef=;Frequency=0.35
chr9	CG	SV	134748404	134748911	50	-	.	ID=1484;Type=distal-duplication;Left=chr9:134748404-134748911;Right=chr9:134749950-134750089
chr9	CG	SV	134749950	134750089	50	-	.	ID=1484;Type=distal-duplication;Left=chr9:134748404-134748911;Right=chr9:134749950-134750089
chr9	CG	SV	135369043	135369653	12	.	.	ID=2788;Type=complex;Left=chr9:135369043-135369605+;Right=chr9:135369385-135369653+;Distance=342;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35795497 (chr9:135369031-135369373);Frequency=1.00
chr9	CG	SV	135369043	135369605	12	+	.	ID=2788;Type=complex;Left=chr9:135369043-135369605;Right=chr9:135369385-135369653
chr9	CG	SV	135369385	135369653	12	+	.	ID=2788;Type=complex;Left=chr9:135369043-135369605;Right=chr9:135369385-135369653
chr9	CG	SV	135369043	135369912	11	.	.	ID=2789;Type=complex;Left=chr9:135369043-135369396+;Right=chr9:135369385-135369912+;Distance=342;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs36107150 (chr9:135369043-135369385);Frequency=1.00
chr9	CG	SV	135369043	135369396	11	+	.	ID=2789;Type=complex;Left=chr9:135369043-135369396;Right=chr9:135369385-135369912
chr9	CG	SV	135369385	135369912	11	+	.	ID=2789;Type=complex;Left=chr9:135369043-135369396;Right=chr9:135369385-135369912
chr9	CG	SV	135403924	135404485	23	.	.	ID=2786;Type=complex;Left=chr9:135403924-135404518+;Right=chr9:135404248-135404485+;Distance=324;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=ERVL-E:LTR:ERVL;LeftGenes=NM_001145320:+;NM_014694:+;RightGenes=NM_001145320:+;NM_014694:+;XRef=;Frequency=1.00
chr9	CG	SV	135403924	135404518	23	+	.	ID=2786;Type=complex;Left=chr9:135403924-135404518;Right=chr9:135404248-135404485
chr9	CG	SV	135404248	135404485	23	+	.	ID=2786;Type=complex;Left=chr9:135403924-135404518;Right=chr9:135404248-135404485
chr9	CG	SV	135403937	135404901	14	.	.	ID=2787;Type=complex;Left=chr9:135403937-135404368+;Right=chr9:135404261-135404901+;Distance=324;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=ERVL-E:LTR:ERVL;LeftGenes=NM_001145320:+;NM_014694:+;RightGenes=NM_001145320:+;NM_014694:+;XRef=rs67544107 (chr9:135403937-135404261);Frequency=1.00
chr9	CG	SV	135403937	135404368	14	+	.	ID=2787;Type=complex;Left=chr9:135403937-135404368;Right=chr9:135404261-135404901
chr9	CG	SV	135404261	135404901	14	+	.	ID=2787;Type=complex;Left=chr9:135403937-135404368;Right=chr9:135404261-135404901
chr9	CG	SV	135443373	135443656	11	.	.	ID=1483;Type=tandem-duplication;Left=chr9:135443373-135443489-;Right=chr9:135443534-135443656-;Distance=167;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=Tandem period 17;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	135443373	135443489	11	-	.	ID=1483;Type=tandem-duplication;Left=chr9:135443373-135443489;Right=chr9:135443534-135443656
chr9	CG	SV	135443534	135443656	11	-	.	ID=1483;Type=tandem-duplication;Left=chr9:135443373-135443489;Right=chr9:135443534-135443656
chr9	CG	SV	135615015	135616559	136	.	.	ID=2785;Type=deletion;Left=chr9:135615015-135615373+;Right=chr9:135616088-135616559+;Distance=1073;DiscordantMatePairAlignments=136;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr9	CG	SV	135615015	135615373	136	+	.	ID=2785;Type=deletion;Left=chr9:135615015-135615373;Right=chr9:135616088-135616559
chr9	CG	SV	135616088	135616559	136	+	.	ID=2785;Type=deletion;Left=chr9:135615015-135615373;Right=chr9:135616088-135616559
chr9	CG	SV	137353885	137358053	453	.	.	ID=2779;Type=deletion;Left=chr9:137353885-137354426+;Right=chr9:137357425-137358053+;Distance=3540;DiscordantMatePairAlignments=453;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66913532 (chr9:137353884-137357424);Frequency=0.82
chr9	CG	SV	137353885	137354426	453	+	.	ID=2779;Type=deletion;Left=chr9:137353885-137354426;Right=chr9:137357425-137358053
chr9	CG	SV	137357425	137358053	453	+	.	ID=2779;Type=deletion;Left=chr9:137353885-137354426;Right=chr9:137357425-137358053
chr9	CG	SV	138547345	138547989	10	.	.	ID=2776;Type=deletion;Left=chr9:138547345-138547923+;Right=chr9:138547616-138547989+;Distance=271;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_017617:-;RightGenes=NM_017617:-;XRef=;Frequency=0.47
chr9	CG	SV	138547345	138547923	10	+	.	ID=2776;Type=deletion;Left=chr9:138547345-138547923;Right=chr9:138547616-138547989
chr9	CG	SV	138547616	138547989	10	+	.	ID=2776;Type=deletion;Left=chr9:138547345-138547923;Right=chr9:138547616-138547989
chr9	CG	SV	139683413	139683852	13	.	.	ID=1481;Type=tandem-duplication;Left=chr9:139683413-139683588-;Right=chr9:139683665-139683852-;Distance=264;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 37;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_001145527:+;NM_024757:+;RightGenes=NM_001145527:+;NM_024757:+;XRef=;Frequency=0.88
chr9	CG	SV	139683413	139683588	13	-	.	ID=1481;Type=tandem-duplication;Left=chr9:139683413-139683588;Right=chr9:139683665-139683852
chr9	CG	SV	139683665	139683852	13	-	.	ID=1481;Type=tandem-duplication;Left=chr9:139683413-139683588;Right=chr9:139683665-139683852
chr9	CG	SV	139892490	139897482	67	.	.	ID=2774;Type=complex;Left=chr9:139892490-139892716+;Right=chr9:139897015-139897482+;Distance=4525;DiscordantMatePairAlignments=67;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000718:+;RightGenes=NM_000718:+;XRef=;Frequency=1.00
chr9	CG	SV	139892490	139892716	67	+	.	ID=2774;Type=complex;Left=chr9:139892490-139892716;Right=chr9:139897015-139897482
chr9	CG	SV	139897015	139897482	67	+	.	ID=2774;Type=complex;Left=chr9:139892490-139892716;Right=chr9:139897015-139897482
chr9	CG	SV	139893433	139897610	36	.	.	ID=2773;Type=complex;Left=chr9:139893433-139893544+;Right=chr9:139897017-139897610+;Distance=3584;DiscordantMatePairAlignments=36;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000718:+;RightGenes=NM_000718:+;XRef=rs72411053 (chr9:139893431-139897015);Frequency=1.00
chr9	CG	SV	139893433	139893544	36	+	.	ID=2773;Type=complex;Left=chr9:139893433-139893544;Right=chr9:139897017-139897610
chr9	CG	SV	139897017	139897610	36	+	.	ID=2773;Type=complex;Left=chr9:139893433-139893544;Right=chr9:139897017-139897610
chr10	CG	SV	4280063	4282237	135	.	.	ID=2768;Type=deletion;Left=chr10:4280063-4280583+;Right=chr10:4281683-4282237+;Distance=1620;DiscordantMatePairAlignments=135;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66666838 (chr10:4280063-4281683);Frequency=1.00
chr10	CG	SV	4280063	4280583	135	+	.	ID=2768;Type=deletion;Left=chr10:4280063-4280583;Right=chr10:4281683-4282237
chr10	CG	SV	4281683	4282237	135	+	.	ID=2768;Type=deletion;Left=chr10:4280063-4280583;Right=chr10:4281683-4282237
chr10	CG	SV	4698518	4700929	66	.	.	ID=2766;Type=deletion;Left=chr10:4698518-4698945+;Right=chr10:4700522-4700929+;Distance=2004;DiscordantMatePairAlignments=66;LeftRepeat=L1MB7:LINE:L1;RightRepeat=L1MB7:LINE:L1;LeftGenes=NR_024475:-;RightGenes=NR_024475:-;XRef=;Frequency=0.88
chr10	CG	SV	4698518	4698945	66	+	.	ID=2766;Type=deletion;Left=chr10:4698518-4698945;Right=chr10:4700522-4700929
chr10	CG	SV	4700522	4700929	66	+	.	ID=2766;Type=deletion;Left=chr10:4698518-4698945;Right=chr10:4700522-4700929
chr10	CG	SV	5192132	5314881	13	.	.	ID=2765;Type=deletion;Left=chr10:5192132-5192706+;Right=chr10:5314789-5314881+;Distance=122657;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_027916:-;RightGenes=;XRef=;Frequency=0.94
chr10	CG	SV	5192132	5192706	13	+	.	ID=2765;Type=deletion;Left=chr10:5192132-5192706;Right=chr10:5314789-5314881
chr10	CG	SV	5314789	5314881	13	+	.	ID=2765;Type=deletion;Left=chr10:5192132-5192706;Right=chr10:5314789-5314881
chr10	CG	SV	5627099	5677678	354	.	.	ID=2764;Type=deletion;Left=chr10:5627099-5627637+;Right=chr10:5677120-5677678+;Distance=50021;DiscordantMatePairAlignments=354;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	5627099	5627637	354	+	.	ID=2764;Type=deletion;Left=chr10:5627099-5627637;Right=chr10:5677120-5677678
chr10	CG	SV	5677120	5677678	354	+	.	ID=2764;Type=deletion;Left=chr10:5627099-5627637;Right=chr10:5677120-5677678
chr10	CG	SV	6137381	6138423	222	.	.	ID=2763;Type=deletion;Left=chr10:6137381-6137821+;Right=chr10:6137879-6138423+;Distance=498;DiscordantMatePairAlignments=222;LeftRepeat=MER5B:DNA:MER1_type;RightRepeat=;LeftGenes=NM_000417:-;RightGenes=NM_000417:-;XRef=rs71389922 (chr10:6137392-6137890);Frequency=1.00
chr10	CG	SV	6137381	6137821	222	+	.	ID=2763;Type=deletion;Left=chr10:6137381-6137821;Right=chr10:6137879-6138423
chr10	CG	SV	6137879	6138423	222	+	.	ID=2763;Type=deletion;Left=chr10:6137381-6137821;Right=chr10:6137879-6138423
chr10	CG	SV	6292000	6293300	22	.	.	ID=2762;Type=deletion;Left=chr10:6292000-6292467+;Right=chr10:6292957-6293300+;Distance=957;DiscordantMatePairAlignments=22;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluYb:SINE:Alu;LeftGenes=NM_001145443:+;NM_004566:+;RightGenes=NM_001145443:+;NM_004566:+;XRef=;Frequency=0.94
chr10	CG	SV	6292000	6292467	22	+	.	ID=2762;Type=deletion;Left=chr10:6292000-6292467;Right=chr10:6292957-6293300
chr10	CG	SV	6292957	6293300	22	+	.	ID=2762;Type=deletion;Left=chr10:6292000-6292467;Right=chr10:6292957-6293300
chr10	CG	SV	6451578	6458196	288	.	.	ID=2761;Type=deletion;Left=chr10:6451578-6452075+;Right=chr10:6457644-6458196+;Distance=6066;DiscordantMatePairAlignments=288;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71389924 (chr10:6451586-6457652);Frequency=0.94
chr10	CG	SV	6451578	6452075	288	+	.	ID=2761;Type=deletion;Left=chr10:6451578-6452075;Right=chr10:6457644-6458196
chr10	CG	SV	6457644	6458196	288	+	.	ID=2761;Type=deletion;Left=chr10:6451578-6452075;Right=chr10:6457644-6458196
chr10	CG	SV	6687903	6689321	90	.	.	ID=2760;Type=deletion;Left=chr10:6687903-6688498+;Right=chr10:6688862-6689321+;Distance=959;DiscordantMatePairAlignments=90;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	6687903	6688498	90	+	.	ID=2760;Type=deletion;Left=chr10:6687903-6688498;Right=chr10:6688862-6689321
chr10	CG	SV	6688862	6689321	90	+	.	ID=2760;Type=deletion;Left=chr10:6687903-6688498;Right=chr10:6688862-6689321
chr10	CG	SV	7117046	7118845	249	.	.	ID=2759;Type=deletion;Left=chr10:7117046-7117611+;Right=chr10:7118307-7118845+;Distance=1261;DiscordantMatePairAlignments=249;LeftRepeat=;RightRepeat=L1ME3A:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr10	CG	SV	7117046	7117611	249	+	.	ID=2759;Type=deletion;Left=chr10:7117046-7117611;Right=chr10:7118307-7118845
chr10	CG	SV	7118307	7118845	249	+	.	ID=2759;Type=deletion;Left=chr10:7117046-7117611;Right=chr10:7118307-7118845
chr10	CG	SV	13144677	13145681	41	.	.	ID=810;Type=probable-inversion;Left=chr10:13144677-13144973-;Right=chr10:13145283-13145681+;Distance=310;DiscordantMatePairAlignments=41;LeftRepeat=LTR8:LTR:ERV1;Tandem period 45;RightRepeat=LTR8:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr10	CG	SV	13144677	13144973	41	-	.	ID=810;Type=probable-inversion;Left=chr10:13144677-13144973;Right=chr10:13145283-13145681
chr10	CG	SV	13145283	13145681	41	-	.	ID=810;Type=probable-inversion;Left=chr10:13144677-13144973;Right=chr10:13145283-13145681
chr10	CG	SV	18543082	18544157	160	.	.	ID=2756;Type=deletion;Left=chr10:18543082-18543600+;Right=chr10:18543596-18544157+;Distance=514;DiscordantMatePairAlignments=160;LeftRepeat=;RightRepeat=;LeftGenes=NM_001167945:+;NM_201571:+;NM_201572:+;NM_201593:+;NM_201596:+;NM_201597:+;RightGenes=NM_001167945:+;NM_201571:+;NM_201572:+;NM_201593:+;NM_201596:+;NM_201597:+;XRef=rs66880279 (chr10:18543081-18543595);Frequency=0.88
chr10	CG	SV	18543082	18543600	160	+	.	ID=2756;Type=deletion;Left=chr10:18543082-18543600;Right=chr10:18543596-18544157
chr10	CG	SV	18543596	18544157	160	+	.	ID=2756;Type=deletion;Left=chr10:18543082-18543600;Right=chr10:18543596-18544157
chr10	CG	SV	27039082	27042405	43	.	.	ID=2753;Type=deletion;Left=chr10:27039082-27039521+;Right=chr10:27042219-27042405+;Distance=3137;DiscordantMatePairAlignments=43;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_014317:+;RightGenes=NM_014317:+;XRef=rs67040591 (chr10:27038982-27042120);Frequency=0.88
chr10	CG	SV	27039082	27039521	43	+	.	ID=2753;Type=deletion;Left=chr10:27039082-27039521;Right=chr10:27042219-27042405
chr10	CG	SV	27042219	27042405	43	+	.	ID=2753;Type=deletion;Left=chr10:27039082-27039521;Right=chr10:27042219-27042405
chr10	CG	SV	27264209	27268453	17	.	.	ID=2752;Type=distal-duplication;Left=chr10:27264209-27264581+;Right=chr10:27268094-27268453+;Distance=3885;DiscordantMatePairAlignments=17;LeftRepeat=AluSc:SINE:Alu;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NR_026795:-;RightGenes=NR_026795:-;XRef=rs72174406 (chr10:27264209-27268094);Frequency=0.76
chr10	CG	SV	27264209	27264581	17	+	.	ID=2752;Type=distal-duplication;Left=chr10:27264209-27264581;Right=chr10:27268094-27268453
chr10	CG	SV	27268094	27268453	17	+	.	ID=2752;Type=distal-duplication;Left=chr10:27264209-27264581;Right=chr10:27268094-27268453
chr10	CG	SV	27264094	27269313	64	.	.	ID=1474;Type=distal-duplication;Left=chr10:27264094-27264633-;Right=chr10:27268755-27269313-;Distance=4680;DiscordantMatePairAlignments=64;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NR_026795:-;RightGenes=NR_026795:-;XRef=;Frequency=0.76
chr10	CG	SV	27264094	27264633	64	-	.	ID=1474;Type=distal-duplication;Left=chr10:27264094-27264633;Right=chr10:27268755-27269313
chr10	CG	SV	27268755	27269313	64	-	.	ID=1474;Type=distal-duplication;Left=chr10:27264094-27264633;Right=chr10:27268755-27269313
chr10	CG	SV	32297891	32301088	111	.	.	ID=2751;Type=deletion;Left=chr10:32297891-32298413+;Right=chr10:32300623-32301088+;Distance=2732;DiscordantMatePairAlignments=111;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72294841 (chr10:32297901-32300633);Frequency=0.88
chr10	CG	SV	32297891	32298413	111	+	.	ID=2751;Type=deletion;Left=chr10:32297891-32298413;Right=chr10:32300623-32301088
chr10	CG	SV	32300623	32301088	111	+	.	ID=2751;Type=deletion;Left=chr10:32297891-32298413;Right=chr10:32300623-32301088
chr10	CG	SV	46508391	46508962	11	.	.	ID=2734;Type=complex;Left=chr10:46508391-46509025+;Right=chr10:46508719-46508962+;Distance=328;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	46508391	46509025	11	+	.	ID=2734;Type=complex;Left=chr10:46508391-46509025;Right=chr10:46508719-46508962
chr10	CG	SV	46508719	46508962	11	+	.	ID=2734;Type=complex;Left=chr10:46508391-46509025;Right=chr10:46508719-46508962
chr10	CG	SV	46508391	46509235	53	.	.	ID=2733;Type=complex;Left=chr10:46508391-46508851+;Right=chr10:46508719-46509235+;Distance=328;DiscordantMatePairAlignments=53;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10705841 (chr10:46508391-46508719);Frequency=0.00
chr10	CG	SV	46508391	46508851	53	+	.	ID=2733;Type=complex;Left=chr10:46508391-46508851;Right=chr10:46508719-46509235
chr10	CG	SV	46508719	46509235	53	+	.	ID=2733;Type=complex;Left=chr10:46508391-46508851;Right=chr10:46508719-46509235
chr10	CG	SV	47112712	47113414	60	.	.	ID=2732;Type=deletion;Left=chr10:47112712-47113228+;Right=chr10:47113163-47113414+;Distance=451;DiscordantMatePairAlignments=60;LeftRepeat=(CCCTAA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem CTAACT;RightRepeat=(CCCTAA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem CTAACT;LeftGenes=;RightGenes=;XRef=rs71702761 (chr10:47112617-47113103);Frequency=1.00
chr10	CG	SV	47112712	47113228	60	+	.	ID=2732;Type=deletion;Left=chr10:47112712-47113228;Right=chr10:47113163-47113414
chr10	CG	SV	47113163	47113414	60	+	.	ID=2732;Type=deletion;Left=chr10:47112712-47113228;Right=chr10:47113163-47113414
chr10	CG	SV	47124524	51159023	14	.	.	ID=4220;Type=probable-inversion;Left=chr10:47124524-47124930+;Right=chr10:51158566-51159023-;Distance=4034499;DiscordantMatePairAlignments=14;LeftRepeat=MIRb:SINE:MIR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr10	CG	SV	47124524	47124930	14	+	.	ID=4220;Type=probable-inversion;Left=chr10:47124524-47124930;Right=chr10:51158566-51159023
chr10	CG	SV	51158566	51159023	14	+	.	ID=4220;Type=probable-inversion;Left=chr10:47124524-47124930;Right=chr10:51158566-51159023
chr10	CG	SV	49587177	49588039	14	.	.	ID=2731;Type=deletion;Left=chr10:49587177-49587726+;Right=chr10:49587500-49588039+;Distance=323;DiscordantMatePairAlignments=14;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_020945:+;RightGenes=NM_020945:+;XRef=rs66463113 (chr10:49587162-49587485);Frequency=1.00
chr10	CG	SV	49587177	49587726	14	+	.	ID=2731;Type=deletion;Left=chr10:49587177-49587726;Right=chr10:49587500-49588039
chr10	CG	SV	49587500	49588039	14	+	.	ID=2731;Type=deletion;Left=chr10:49587177-49587726;Right=chr10:49587500-49588039
chr10	CG	SV	52970367	53080080	16	.	.	ID=2730;Type=deletion;Left=chr10:52970367-52970567+;Right=chr10:53079669-53080080+;Distance=109302;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;RightRepeat=MER51A:LTR:ERV1;Self chain;LeftGenes=NM_001098512:+;NM_006258:+;RightGenes=NM_001098512:+;NM_006258:+;XRef=;Frequency=0.00
chr10	CG	SV	52970367	52970567	16	+	.	ID=2730;Type=deletion;Left=chr10:52970367-52970567;Right=chr10:53079669-53080080
chr10	CG	SV	53079669	53080080	16	+	.	ID=2730;Type=deletion;Left=chr10:52970367-52970567;Right=chr10:53079669-53080080
chr10	CG	SV	53652480	53663405	25	.	.	ID=1413;Type=tandem-duplication;Left=chr10:53652480-53652666-;Right=chr10:53662943-53663405-;Distance=10739;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;RightRepeat=L1PA2:LINE:L1;Self chain;LeftGenes=NM_001098512:+;NM_006258:+;RightGenes=NM_001098512:+;NM_006258:+;XRef=;Frequency=0.00
chr10	CG	SV	53652480	53652666	25	-	.	ID=1413;Type=tandem-duplication;Left=chr10:53652480-53652666;Right=chr10:53662943-53663405
chr10	CG	SV	53662943	53663405	25	-	.	ID=1413;Type=tandem-duplication;Left=chr10:53652480-53652666;Right=chr10:53662943-53663405
chr10	CG	SV	54453548	54459351	21	.	.	ID=2727;Type=deletion;Left=chr10:54453548-54453952+;Right=chr10:54458835-54459351+;Distance=5287;DiscordantMatePairAlignments=21;LeftRepeat=LTR8:LTR:ERV1;Self chain;RightRepeat=HERV30:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr10	CG	SV	54453548	54453952	21	+	.	ID=2727;Type=deletion;Left=chr10:54453548-54453952;Right=chr10:54458835-54459351
chr10	CG	SV	54458835	54459351	21	+	.	ID=2727;Type=deletion;Left=chr10:54453548-54453952;Right=chr10:54458835-54459351
chr10	CG	SV	77925584	77931562	25	.	.	ID=2724;Type=deletion;Left=chr10:77925584-77926125+;Right=chr10:77931031-77931562+;Distance=5447;DiscordantMatePairAlignments=25;LeftRepeat=L1MD:LINE:L1;Self chain;RightRepeat=L1PA16:LINE:L1;Self chain;LeftGenes=NM_032024:+;RightGenes=NM_032024:+;XRef=;Frequency=1.00
chr10	CG	SV	77925584	77926125	25	+	.	ID=2724;Type=deletion;Left=chr10:77925584-77926125;Right=chr10:77931031-77931562
chr10	CG	SV	77931031	77931562	25	+	.	ID=2724;Type=deletion;Left=chr10:77925584-77926125;Right=chr10:77931031-77931562
chr10	CG	SV	78470917	78471620	17	.	.	ID=2722;Type=deletion;Left=chr10:78470917-78471350+;Right=chr10:78471236-78471620+;Distance=319;DiscordantMatePairAlignments=17;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;Tandem period 183;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_001014797:-;NM_001161352:-;NM_001161353:-;NM_002247:-;RightGenes=NM_001014797:-;NM_001161352:-;NM_001161353:-;NM_002247:-;XRef=rs67173538 (chr10:78470908-78471227);Frequency=1.00
chr10	CG	SV	78470917	78471350	17	+	.	ID=2722;Type=deletion;Left=chr10:78470917-78471350;Right=chr10:78471236-78471620
chr10	CG	SV	78471236	78471620	17	+	.	ID=2722;Type=deletion;Left=chr10:78470917-78471350;Right=chr10:78471236-78471620
chr10	CG	SV	80762188	80763024	150	.	.	ID=2721;Type=deletion;Left=chr10:80762188-80762723+;Right=chr10:80762786-80763024+;Distance=598;DiscordantMatePairAlignments=150;LeftRepeat=Self chain;RightRepeat=L1ME3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr10	CG	SV	80762188	80762723	150	+	.	ID=2721;Type=deletion;Left=chr10:80762188-80762723;Right=chr10:80762786-80763024
chr10	CG	SV	80762786	80763024	150	+	.	ID=2721;Type=deletion;Left=chr10:80762188-80762723;Right=chr10:80762786-80763024
chr10	CG	SV	84227963	84229000	104	.	.	ID=2719;Type=deletion;Left=chr10:84227963-84228427+;Right=chr10:84228456-84229000+;Distance=493;DiscordantMatePairAlignments=104;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;RightGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;XRef=rs66512026 (chr10:84227952-84228445);Frequency=0.82
chr10	CG	SV	84227963	84228427	104	+	.	ID=2719;Type=deletion;Left=chr10:84227963-84228427;Right=chr10:84228456-84229000
chr10	CG	SV	84228456	84229000	104	+	.	ID=2719;Type=deletion;Left=chr10:84227963-84228427;Right=chr10:84228456-84229000
chr10	CG	SV	89265777	89266884	21	.	.	ID=2718;Type=deletion;Left=chr10:89265777-89266202+;Right=chr10:89266548-89266884+;Distance=771;DiscordantMatePairAlignments=21;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_004897:+;RightGenes=NM_004897:+;XRef=;Frequency=0.71
chr10	CG	SV	89265777	89266202	21	+	.	ID=2718;Type=deletion;Left=chr10:89265777-89266202;Right=chr10:89266548-89266884
chr10	CG	SV	89266548	89266884	21	+	.	ID=2718;Type=deletion;Left=chr10:89265777-89266202;Right=chr10:89266548-89266884
chr10	CG	SV	92959211	92960066	10	.	.	ID=2717;Type=deletion;Left=chr10:92959211-92959574+;Right=chr10:92959549-92960066+;Distance=338;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67229336 (chr10:92959211-92959549);Frequency=1.00
chr10	CG	SV	92959211	92959574	10	+	.	ID=2717;Type=deletion;Left=chr10:92959211-92959574;Right=chr10:92959549-92960066
chr10	CG	SV	92959549	92960066	10	+	.	ID=2717;Type=deletion;Left=chr10:92959211-92959574;Right=chr10:92959549-92960066
chr10	CG	SV	94124579	94127906	43	.	.	ID=2716;Type=deletion;Left=chr10:94124579-94125008+;Right=chr10:94127633-94127906+;Distance=3054;DiscordantMatePairAlignments=43;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=rs66665405 (chr10:94124594-94127633);Frequency=1.00
chr10	CG	SV	94124579	94125008	43	+	.	ID=2716;Type=deletion;Left=chr10:94124579-94125008;Right=chr10:94127633-94127906
chr10	CG	SV	94127633	94127906	43	+	.	ID=2716;Type=deletion;Left=chr10:94124579-94125008;Right=chr10:94127633-94127906
chr10	CG	SV	95535467	95537007	70	.	.	ID=2715;Type=deletion;Left=chr10:95535467-95535812+;Right=chr10:95536485-95537007+;Distance=1018;DiscordantMatePairAlignments=70;LeftRepeat=L4:LINE:RTE;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=NM_005097:+;RightGenes=NM_005097:+;XRef=;Frequency=1.00
chr10	CG	SV	95535467	95535812	70	+	.	ID=2715;Type=deletion;Left=chr10:95535467-95535812;Right=chr10:95536485-95537007
chr10	CG	SV	95536485	95537007	70	+	.	ID=2715;Type=deletion;Left=chr10:95535467-95535812;Right=chr10:95536485-95537007
chr10	CG	SV	97196503	97198010	32	.	.	ID=1379;Type=distal-duplication;Left=chr10:97196503-97196775-;Right=chr10:97197617-97198010-;Distance=1235;DiscordantMatePairAlignments=32;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_015385:-;NM_024991:-;RightGenes=NM_015385:-;NM_024991:-;XRef=;Frequency=0.76
chr10	CG	SV	97196503	97196775	32	-	.	ID=1379;Type=distal-duplication;Left=chr10:97196503-97196775;Right=chr10:97197617-97198010
chr10	CG	SV	97197617	97198010	32	-	.	ID=1379;Type=distal-duplication;Left=chr10:97196503-97196775;Right=chr10:97197617-97198010
chr10	CG	SV	97197045	97198576	37	.	.	ID=2714;Type=distal-duplication;Left=chr10:97197045-97197284+;Right=chr10:97198018-97198576+;Distance=973;DiscordantMatePairAlignments=37;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=NM_015385:-;NM_024991:-;RightGenes=NM_015385:-;NM_024991:-;XRef=rs71977870 (chr10:97197044-97198017);Frequency=0.76
chr10	CG	SV	97197045	97197284	37	+	.	ID=2714;Type=distal-duplication;Left=chr10:97197045-97197284;Right=chr10:97198018-97198576
chr10	CG	SV	97198018	97198576	37	+	.	ID=2714;Type=distal-duplication;Left=chr10:97197045-97197284;Right=chr10:97198018-97198576
chr10	CG	SV	99024859	99027869	288	.	.	ID=2713;Type=deletion;Left=chr10:99024859-99025260+;Right=chr10:99027393-99027869+;Distance=2534;DiscordantMatePairAlignments=288;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_032900:-;RightGenes=NM_032900:-;XRef=rs67953540 (chr10:99024853-99027387);Frequency=1.00
chr10	CG	SV	99024859	99025260	288	+	.	ID=2713;Type=deletion;Left=chr10:99024859-99025260;Right=chr10:99027393-99027869
chr10	CG	SV	99027393	99027869	288	+	.	ID=2713;Type=deletion;Left=chr10:99024859-99025260;Right=chr10:99027393-99027869
chr10	CG	SV	102148300	102149764	13	.	.	ID=2712;Type=deletion;Left=chr10:102148300-102148614+;Right=chr10:102149529-102149764+;Distance=1229;DiscordantMatePairAlignments=13;LeftRepeat=FLAM_C:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66913242 (chr10:102148298-102149527);Frequency=0.18
chr10	CG	SV	102148300	102148614	13	+	.	ID=2712;Type=deletion;Left=chr10:102148300-102148614;Right=chr10:102149529-102149764
chr10	CG	SV	102149529	102149764	13	+	.	ID=2712;Type=deletion;Left=chr10:102148300-102148614;Right=chr10:102149529-102149764
chr10	CG	SV	107242992	107243820	17	.	.	ID=2711;Type=deletion;Left=chr10:107242992-107243448+;Right=chr10:107243345-107243820+;Distance=353;DiscordantMatePairAlignments=17;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67319612 (chr10:107242992-107243345);Frequency=0.76
chr10	CG	SV	107242992	107243448	17	+	.	ID=2711;Type=deletion;Left=chr10:107242992-107243448;Right=chr10:107243345-107243820
chr10	CG	SV	107243345	107243820	17	+	.	ID=2711;Type=deletion;Left=chr10:107242992-107243448;Right=chr10:107243345-107243820
chr10	CG	SV	107940674	107942053	182	.	.	ID=2710;Type=deletion;Left=chr10:107940674-107941261+;Right=chr10:107941587-107942053+;Distance=913;DiscordantMatePairAlignments=182;LeftRepeat=MER5A1:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67619770 (chr10:107940674-107941587);Frequency=0.94
chr10	CG	SV	107940674	107941261	182	+	.	ID=2710;Type=deletion;Left=chr10:107940674-107941261;Right=chr10:107941587-107942053
chr10	CG	SV	107941587	107942053	182	+	.	ID=2710;Type=deletion;Left=chr10:107940674-107941261;Right=chr10:107941587-107942053
chr10	CG	SV	108020311	108023113	80	.	.	ID=2709;Type=deletion;Left=chr10:108020311-108020669+;Right=chr10:108022535-108023113+;Distance=2224;DiscordantMatePairAlignments=80;LeftRepeat=MER52-int:LTR:ERV1;RightRepeat=MER52-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr10	CG	SV	108020311	108020669	80	+	.	ID=2709;Type=deletion;Left=chr10:108020311-108020669;Right=chr10:108022535-108023113
chr10	CG	SV	108022535	108023113	80	+	.	ID=2709;Type=deletion;Left=chr10:108020311-108020669;Right=chr10:108022535-108023113
chr10	CG	SV	111562107	111568727	61	.	.	ID=2707;Type=deletion;Left=chr10:111562107-111562596+;Right=chr10:111568213-111568727+;Distance=6106;DiscordantMatePairAlignments=61;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66614434 (chr10:111562100-111568206);Frequency=1.00
chr10	CG	SV	111562107	111562596	61	+	.	ID=2707;Type=deletion;Left=chr10:111562107-111562596;Right=chr10:111568213-111568727
chr10	CG	SV	111568213	111568727	61	+	.	ID=2707;Type=deletion;Left=chr10:111562107-111562596;Right=chr10:111568213-111568727
chr10	CG	SV	114102173	114107095	135	.	.	ID=2706;Type=deletion;Left=chr10:114102173-114102714+;Right=chr10:114106650-114107095+;Distance=4477;DiscordantMatePairAlignments=135;LeftRepeat=AluSx:SINE:Alu;RightRepeat=MIRm:SINE:MIR;LeftGenes=NR_028134:-;RightGenes=;XRef=rs68033286 (chr10:114102171-114106648);Frequency=0.88
chr10	CG	SV	114102173	114102714	135	+	.	ID=2706;Type=deletion;Left=chr10:114102173-114102714;Right=chr10:114106650-114107095
chr10	CG	SV	114106650	114107095	135	+	.	ID=2706;Type=deletion;Left=chr10:114102173-114102714;Right=chr10:114106650-114107095
chr10	CG	SV	114148114	114148669	10	.	.	ID=2705;Type=deletion;Left=chr10:114148114-114148708+;Right=chr10:114148454-114148669+;Distance=340;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=NM_016234:+;NM_203379:+;NM_203380:+;RightGenes=NM_016234:+;NM_203379:+;NM_203380:+;XRef=rs67745387 (chr10:114147791-114148129);Frequency=1.00
chr10	CG	SV	114148114	114148708	10	+	.	ID=2705;Type=deletion;Left=chr10:114148114-114148708;Right=chr10:114148454-114148669
chr10	CG	SV	114148454	114148669	10	+	.	ID=2705;Type=deletion;Left=chr10:114148114-114148708;Right=chr10:114148454-114148669
chr10	CG	SV	119624273	119625152	27	.	.	ID=2703;Type=deletion;Left=chr10:119624273-119624943+;Right=chr10:119624604-119625152+;Distance=331;DiscordantMatePairAlignments=27;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71389988 (chr10:119624273-119624604);Frequency=1.00
chr10	CG	SV	119624273	119624943	27	+	.	ID=2703;Type=deletion;Left=chr10:119624273-119624943;Right=chr10:119624604-119625152
chr10	CG	SV	119624604	119625152	27	+	.	ID=2703;Type=deletion;Left=chr10:119624273-119624943;Right=chr10:119624604-119625152
chr10	CG	SV	122216763	122219231	46	.	.	ID=2702;Type=deletion;Left=chr10:122216763-122217162+;Right=chr10:122218911-122219231+;Distance=2148;DiscordantMatePairAlignments=46;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_001030059:+;RightGenes=NM_001030059:+;XRef=rs66889305 (chr10:122216588-122218737);Frequency=1.00
chr10	CG	SV	122216763	122217162	46	+	.	ID=2702;Type=deletion;Left=chr10:122216763-122217162;Right=chr10:122218911-122219231
chr10	CG	SV	122218911	122219231	46	+	.	ID=2702;Type=deletion;Left=chr10:122216763-122217162;Right=chr10:122218911-122219231
chr10	CG	SV	125909385	125909664	13	.	.	ID=712;Type=tandem-duplication;Left=chr10:125909385-125909498-;Right=chr10:125909562-125909664-;Distance=166;DiscordantMatePairAlignments=13;LeftRepeat=Tandem period 12;RightRepeat=Tandem period 12;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	125909385	125909498	13	-	.	ID=712;Type=tandem-duplication;Left=chr10:125909385-125909498;Right=chr10:125909562-125909664
chr10	CG	SV	125909562	125909664	13	-	.	ID=712;Type=tandem-duplication;Left=chr10:125909385-125909498;Right=chr10:125909562-125909664
chr10	CG	SV	127180176	127181175	67	.	.	ID=669;Type=complex;Left=chr10:127180176-127180407-;Right=chr10:127180684-127181175+;Distance=277;DiscordantMatePairAlignments=67;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr10	CG	SV	127180176	127180407	67	-	.	ID=669;Type=complex;Left=chr10:127180176-127180407;Right=chr10:127180684-127181175
chr10	CG	SV	127180684	127181175	67	-	.	ID=669;Type=complex;Left=chr10:127180176-127180407;Right=chr10:127180684-127181175
chr10	CG	SV	127180963	127187217	175	.	.	ID=4206;Type=complex;Left=chr10:127180963-127181523+;Right=chr10:127186689-127187217-;Distance=6254;DiscordantMatePairAlignments=175;LeftRepeat=Alu:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr10	CG	SV	127180963	127181523	175	+	.	ID=4206;Type=complex;Left=chr10:127180963-127181523;Right=chr10:127186689-127187217
chr10	CG	SV	127186689	127187217	175	+	.	ID=4206;Type=complex;Left=chr10:127180963-127181523;Right=chr10:127186689-127187217
chr10	CG	SV	127181647	127187632	25	.	.	ID=2699;Type=complex;Left=chr10:127181647-127182110+;Right=chr10:127187226-127187632+;Distance=5579;DiscordantMatePairAlignments=25;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66681237 (chr10:127181645-127187224);Frequency=0.82
chr10	CG	SV	127181647	127182110	25	+	.	ID=2699;Type=complex;Left=chr10:127181647-127182110;Right=chr10:127187226-127187632
chr10	CG	SV	127187226	127187632	25	+	.	ID=2699;Type=complex;Left=chr10:127181647-127182110;Right=chr10:127187226-127187632
chr10	CG	SV	127573310	127579776	15	.	.	ID=2698;Type=deletion;Left=chr10:127573310-127573611+;Right=chr10:127579340-127579776+;Distance=6030;DiscordantMatePairAlignments=15;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=NM_145235:+;XRef=;Frequency=0.47
chr10	CG	SV	127573310	127573611	15	+	.	ID=2698;Type=deletion;Left=chr10:127573310-127573611;Right=chr10:127579340-127579776
chr10	CG	SV	127579340	127579776	15	+	.	ID=2698;Type=deletion;Left=chr10:127573310-127573611;Right=chr10:127579340-127579776
chr10	CG	SV	127735177	127736494	266	.	.	ID=2696;Type=deletion;Left=chr10:127735177-127735760+;Right=chr10:127735977-127736494+;Distance=800;DiscordantMatePairAlignments=266;LeftRepeat=;RightRepeat=;LeftGenes=NM_003474:-;NM_021641:-;RightGenes=NM_003474:-;NM_021641:-;XRef=rs67650775 (chr10:127735174-127735974);Frequency=0.94
chr10	CG	SV	127735177	127735760	266	+	.	ID=2696;Type=deletion;Left=chr10:127735177-127735760;Right=chr10:127735977-127736494
chr10	CG	SV	127735977	127736494	266	+	.	ID=2696;Type=deletion;Left=chr10:127735177-127735760;Right=chr10:127735977-127736494
chr10	CG	SV	128096475	128097351	18	.	.	ID=2695;Type=deletion;Left=chr10:128096475-128096959+;Right=chr10:128096789-128097351+;Distance=314;DiscordantMatePairAlignments=18;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10527649 (chr10:128096475-128096789);Frequency=1.00
chr10	CG	SV	128096475	128096959	18	+	.	ID=2695;Type=deletion;Left=chr10:128096475-128096959;Right=chr10:128096789-128097351
chr10	CG	SV	128096789	128097351	18	+	.	ID=2695;Type=deletion;Left=chr10:128096475-128096959;Right=chr10:128096789-128097351
chr10	CG	SV	132048522	132049351	51	.	.	ID=2693;Type=deletion;Left=chr10:132048522-132048991+;Right=chr10:132048956-132049351+;Distance=434;DiscordantMatePairAlignments=51;LeftRepeat=(TC)n:Simple_repeat:Simple_repeat;Tandem CTCTCT;Tandem period 10;Tandem period 14;Tandem period 8;RightRepeat=(TC)n:Simple_repeat:Simple_repeat;Tandem CTCTCT;Tandem period 10;Tandem period 14;Tandem period 8;LeftGenes=;RightGenes=;XRef=rs33996726 (chr10:132048415-132048801);Frequency=1.00
chr10	CG	SV	132048522	132048991	51	+	.	ID=2693;Type=deletion;Left=chr10:132048522-132048991;Right=chr10:132048956-132049351
chr10	CG	SV	132048956	132049351	51	+	.	ID=2693;Type=deletion;Left=chr10:132048522-132048991;Right=chr10:132048956-132049351
chr10	CG	SV	132147821	132148551	22	.	.	ID=2692;Type=deletion;Left=chr10:132147821-132148239+;Right=chr10:132148339-132148551+;Distance=518;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;Tandem period 26;RightRepeat=Self chain;Tandem period 26;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr10	CG	SV	132147821	132148239	22	+	.	ID=2692;Type=deletion;Left=chr10:132147821-132148239;Right=chr10:132148339-132148551
chr10	CG	SV	132148339	132148551	22	+	.	ID=2692;Type=deletion;Left=chr10:132147821-132148239;Right=chr10:132148339-132148551
chr10	CG	SV	132748479	132749444	17	.	.	ID=2691;Type=deletion;Left=chr10:132748479-132748943+;Right=chr10:132748828-132749444+;Distance=349;DiscordantMatePairAlignments=17;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67563509 (chr10:132748461-132748810);Frequency=0.76
chr10	CG	SV	132748479	132748943	17	+	.	ID=2691;Type=deletion;Left=chr10:132748479-132748943;Right=chr10:132748828-132749444
chr10	CG	SV	132748828	132749444	17	+	.	ID=2691;Type=deletion;Left=chr10:132748479-132748943;Right=chr10:132748828-132749444
chr10	CG	SV	132977844	132978624	10	.	.	ID=2690;Type=deletion;Left=chr10:132977844-132978135+;Right=chr10:132978472-132978624+;Distance=628;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 62;Tandem period 64;RightRepeat=Self chain;Tandem period 64;LeftGenes=NM_174937:-;RightGenes=NM_174937:-;XRef=;Frequency=0.76
chr10	CG	SV	132977844	132978135	10	+	.	ID=2690;Type=deletion;Left=chr10:132977844-132978135;Right=chr10:132978472-132978624
chr10	CG	SV	132978472	132978624	10	+	.	ID=2690;Type=deletion;Left=chr10:132977844-132978135;Right=chr10:132978472-132978624
chr10	CG	SV	133501876	133502333	41	.	.	ID=709;Type=tandem-duplication;Left=chr10:133501876-133502101-;Right=chr10:133502120-133502333-;Distance=232;DiscordantMatePairAlignments=41;LeftRepeat=L1MD2:LINE:L1;Self chain;RightRepeat=L1MD2:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr10	CG	SV	133501876	133502101	41	-	.	ID=709;Type=tandem-duplication;Left=chr10:133501876-133502101;Right=chr10:133502120-133502333
chr10	CG	SV	133502120	133502333	41	-	.	ID=709;Type=tandem-duplication;Left=chr10:133501876-133502101;Right=chr10:133502120-133502333
chr10	CG	SV	134027766	134028337	14	.	.	ID=708;Type=tandem-duplication;Left=chr10:134027766-134027867-;Right=chr10:134028108-134028337-;Distance=470;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 12;Tandem period 16;Tandem period 36;RightRepeat=C-rich:Low_complexity:Low_complexity;Self chain;LeftGenes=NM_001143757:+;NM_030626:+;NR_026559:+;RightGenes=NM_001143757:+;NM_030626:+;NR_026559:+;XRef=;Frequency=0.88
chr10	CG	SV	134027766	134027867	14	-	.	ID=708;Type=tandem-duplication;Left=chr10:134027766-134027867;Right=chr10:134028108-134028337
chr10	CG	SV	134028108	134028337	14	-	.	ID=708;Type=tandem-duplication;Left=chr10:134027766-134027867;Right=chr10:134028108-134028337
chr10	CG	SV	134577562	134578825	92	.	.	ID=2689;Type=deletion;Left=chr10:134577562-134577980+;Right=chr10:134578321-134578825+;Distance=759;DiscordantMatePairAlignments=92;LeftRepeat=Self chain;Tandem period 33;RightRepeat=Self chain;Tandem period 33;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr10	CG	SV	134577562	134577980	92	+	.	ID=2689;Type=deletion;Left=chr10:134577562-134577980;Right=chr10:134578321-134578825
chr10	CG	SV	134578321	134578825	92	+	.	ID=2689;Type=deletion;Left=chr10:134577562-134577980;Right=chr10:134578321-134578825
chr10	CG	SV	134954789	134956516	169	.	.	ID=2688;Type=deletion;Left=chr10:134954789-134955412+;Right=chr10:134955980-134956516+;Distance=1191;DiscordantMatePairAlignments=169;LeftRepeat=Self chain;Tandem period 188;Tandem period 94;RightRepeat=Self chain;LeftGenes=NM_006659:-;RightGenes=NM_006659:-;XRef=rs72187097 (chr10:134954841-134955956);Frequency=0.88
chr10	CG	SV	134954789	134955412	169	+	.	ID=2688;Type=deletion;Left=chr10:134954789-134955412;Right=chr10:134955980-134956516
chr10	CG	SV	134955980	134956516	169	+	.	ID=2688;Type=deletion;Left=chr10:134954789-134955412;Right=chr10:134955980-134956516
chr11	CG	SV	632625	632857	14	.	.	ID=702;Type=tandem-duplication;Left=chr11:632625-632713-;Right=chr11:632768-632857-;Distance=144;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 16;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr11	CG	SV	632625	632713	14	-	.	ID=702;Type=tandem-duplication;Left=chr11:632625-632713;Right=chr11:632768-632857
chr11	CG	SV	632768	632857	14	-	.	ID=702;Type=tandem-duplication;Left=chr11:632625-632713;Right=chr11:632768-632857
chr11	CG	SV	1168922	1170150	13	.	.	ID=697;Type=tandem-duplication;Left=chr11:1168922-1169377-;Right=chr11:1169518-1170150-;Distance=773;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 48;Tandem period 96;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	1168922	1169377	13	-	.	ID=697;Type=tandem-duplication;Left=chr11:1168922-1169377;Right=chr11:1169518-1170150
chr11	CG	SV	1169518	1170150	13	-	.	ID=697;Type=tandem-duplication;Left=chr11:1168922-1169377;Right=chr11:1169518-1170150
chr11	CG	SV	1619557	1620455	58	.	.	ID=2685;Type=deletion;Left=chr11:1619557-1620028+;Right=chr11:1620138-1620455+;Distance=581;DiscordantMatePairAlignments=58;LeftRepeat=(CACCC)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 16;Tandem period 31;RightRepeat=(CACCC)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 16;Tandem period 31;LeftGenes=NM_053005:-;RightGenes=NM_053005:-;XRef=;Frequency=0.94
chr11	CG	SV	1619557	1620028	58	+	.	ID=2685;Type=deletion;Left=chr11:1619557-1620028;Right=chr11:1620138-1620455
chr11	CG	SV	1620138	1620455	58	+	.	ID=2685;Type=deletion;Left=chr11:1619557-1620028;Right=chr11:1620138-1620455
chr11	CG	SV	1871824	1894147	64	.	.	ID=2684;Type=deletion;Left=chr11:1871824-1872264+;Right=chr11:1893531-1894147+;Distance=21707;DiscordantMatePairAlignments=64;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	1871824	1872264	64	+	.	ID=2684;Type=deletion;Left=chr11:1871824-1872264;Right=chr11:1893531-1894147
chr11	CG	SV	1893531	1894147	64	+	.	ID=2684;Type=deletion;Left=chr11:1871824-1872264;Right=chr11:1893531-1894147
chr11	CG	SV	5716663	5719441	38	.	.	ID=2680;Type=deletion;Left=chr11:5716663-5717033+;Right=chr11:5718941-5719441+;Distance=2278;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr11	CG	SV	5716663	5717033	38	+	.	ID=2680;Type=deletion;Left=chr11:5716663-5717033;Right=chr11:5718941-5719441
chr11	CG	SV	5718941	5719441	38	+	.	ID=2680;Type=deletion;Left=chr11:5716663-5717033;Right=chr11:5718941-5719441
chr11	CG	SV	7673491	7674233	11	.	.	ID=2678;Type=deletion;Left=chr11:7673491-7674110+;Right=chr11:7673807-7674233+;Distance=316;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_198185:-;RightGenes=NM_198185:-;XRef=rs6144199 (chr11:7673479-7673795);Frequency=1.00
chr11	CG	SV	7673491	7674110	11	+	.	ID=2678;Type=deletion;Left=chr11:7673491-7674110;Right=chr11:7673807-7674233
chr11	CG	SV	7673807	7674233	11	+	.	ID=2678;Type=deletion;Left=chr11:7673491-7674110;Right=chr11:7673807-7674233
chr11	CG	SV	12109134	12110004	14	.	.	ID=2676;Type=deletion;Left=chr11:12109134-12109632+;Right=chr11:12109458-12110004+;Distance=324;DiscordantMatePairAlignments=14;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_014632:+;RightGenes=NM_014632:+;XRef=rs72288281 (chr11:12109134-12109458);Frequency=0.88
chr11	CG	SV	12109134	12109632	14	+	.	ID=2676;Type=deletion;Left=chr11:12109134-12109632;Right=chr11:12109458-12110004
chr11	CG	SV	12109458	12110004	14	+	.	ID=2676;Type=deletion;Left=chr11:12109134-12109632;Right=chr11:12109458-12110004
chr11	CG	SV	20801133	20806974	121	.	.	ID=2673;Type=deletion;Left=chr11:20801133-20801539+;Right=chr11:20806526-20806974+;Distance=5393;DiscordantMatePairAlignments=121;LeftRepeat=;RightRepeat=;LeftGenes=NM_006157:+;NM_201551:+;RightGenes=NM_006157:+;NM_201551:+;XRef=;Frequency=0.20
chr11	CG	SV	20801133	20801539	121	+	.	ID=2673;Type=deletion;Left=chr11:20801133-20801539;Right=chr11:20806526-20806974
chr11	CG	SV	20806526	20806974	121	+	.	ID=2673;Type=deletion;Left=chr11:20801133-20801539;Right=chr11:20806526-20806974
chr11	CG	SV	29095930	29097188	14	.	.	ID=2669;Type=deletion;Left=chr11:29095930-29096345+;Right=chr11:29096914-29097188+;Distance=984;DiscordantMatePairAlignments=14;LeftRepeat=GA-rich:Low_complexity:Low_complexity;Tandem AAGG;Tandem period 8;RightRepeat=(GGAA)n:Simple_repeat:Simple_repeat;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr11	CG	SV	29095930	29096345	14	+	.	ID=2669;Type=deletion;Left=chr11:29095930-29096345;Right=chr11:29096914-29097188
chr11	CG	SV	29096914	29097188	14	+	.	ID=2669;Type=deletion;Left=chr11:29095930-29096345;Right=chr11:29096914-29097188
chr11	CG	SV	33494263	33495182	19	.	.	ID=2666;Type=deletion;Left=chr11:33494263-33494885+;Right=chr11:33494586-33495182+;Distance=323;DiscordantMatePairAlignments=19;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71980770 (chr11:33494248-33494571);Frequency=0.71
chr11	CG	SV	33494263	33494885	19	+	.	ID=2666;Type=deletion;Left=chr11:33494263-33494885;Right=chr11:33494586-33495182
chr11	CG	SV	33494586	33495182	19	+	.	ID=2666;Type=deletion;Left=chr11:33494263-33494885;Right=chr11:33494586-33495182
chr11	CG	SV	34684699	34685596	14	.	.	ID=2665;Type=deletion;Left=chr11:34684699-34684991+;Right=chr11:34685194-34685596+;Distance=495;DiscordantMatePairAlignments=14;LeftRepeat=L1MA2:LINE:L1;RightRepeat=L1MA2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr11	CG	SV	34684699	34684991	14	+	.	ID=2665;Type=deletion;Left=chr11:34684699-34684991;Right=chr11:34685194-34685596
chr11	CG	SV	34685194	34685596	14	+	.	ID=2665;Type=deletion;Left=chr11:34684699-34684991;Right=chr11:34685194-34685596
chr11	CG	SV	43848420	43849097	13	.	.	ID=2661;Type=deletion;Left=chr11:43848420-43848998+;Right=chr11:43848756-43849097+;Distance=336;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66477328 (chr11:43848405-43848741);Frequency=1.00
chr11	CG	SV	43848420	43848998	13	+	.	ID=2661;Type=deletion;Left=chr11:43848420-43848998;Right=chr11:43848756-43849097
chr11	CG	SV	43848756	43849097	13	+	.	ID=2661;Type=deletion;Left=chr11:43848420-43848998;Right=chr11:43848756-43849097
chr11	CG	SV	45386425	45388617	106	.	.	ID=2660;Type=deletion;Left=chr11:45386425-45386999+;Right=chr11:45388192-45388617+;Distance=1767;DiscordantMatePairAlignments=106;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66503754 (chr11:45386425-45388192);Frequency=0.94
chr11	CG	SV	45386425	45386999	106	+	.	ID=2660;Type=deletion;Left=chr11:45386425-45386999;Right=chr11:45388192-45388617
chr11	CG	SV	45388192	45388617	106	+	.	ID=2660;Type=deletion;Left=chr11:45386425-45386999;Right=chr11:45388192-45388617
chr11	CG	SV	47844243	47845236	35	.	.	ID=2658;Type=deletion;Left=chr11:47844243-47844680+;Right=chr11:47844770-47845236+;Distance=527;DiscordantMatePairAlignments=35;LeftRepeat=AluSp:SINE:Alu;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr11	CG	SV	47844243	47844680	35	+	.	ID=2658;Type=deletion;Left=chr11:47844243-47844680;Right=chr11:47844770-47845236
chr11	CG	SV	47844770	47845236	35	+	.	ID=2658;Type=deletion;Left=chr11:47844243-47844680;Right=chr11:47844770-47845236
chr11	CG	SV	48076647	48077347	12	.	.	ID=2657;Type=deletion;Left=chr11:48076647-48077210+;Right=chr11:48076956-48077347+;Distance=309;DiscordantMatePairAlignments=12;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=;LeftGenes=NM_001098503:+;NM_002843:+;RightGenes=NM_001098503:+;NM_002843:+;XRef=rs72286428 (chr11:48076637-48076946);Frequency=0.94
chr11	CG	SV	48076647	48077210	12	+	.	ID=2657;Type=deletion;Left=chr11:48076647-48077210;Right=chr11:48076956-48077347
chr11	CG	SV	48076956	48077347	12	+	.	ID=2657;Type=deletion;Left=chr11:48076647-48077210;Right=chr11:48076956-48077347
chr11	CG	SV	48324100	48330680	53	.	.	ID=2655;Type=deletion;Left=chr11:48324100-48324649+;Right=chr11:48330281-48330680+;Distance=6181;DiscordantMatePairAlignments=53;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001005513:-;RightGenes=NM_001005513:-;XRef=rs71787435 (chr11:48324104-48330285);Frequency=1.00
chr11	CG	SV	48324100	48324649	53	+	.	ID=2655;Type=deletion;Left=chr11:48324100-48324649;Right=chr11:48330281-48330680
chr11	CG	SV	48330281	48330680	53	+	.	ID=2655;Type=deletion;Left=chr11:48324100-48324649;Right=chr11:48330281-48330680
chr11	CG	SV	57923575	57925208	65	.	.	ID=2645;Type=deletion;Left=chr11:57923575-57923934+;Right=chr11:57924743-57925208+;Distance=1168;DiscordantMatePairAlignments=65;LeftRepeat=(TTTTA)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72147631 (chr11:57923575-57924743);Frequency=0.71
chr11	CG	SV	57923575	57923934	65	+	.	ID=2645;Type=deletion;Left=chr11:57923575-57923934;Right=chr11:57924743-57925208
chr11	CG	SV	57924743	57925208	65	+	.	ID=2645;Type=deletion;Left=chr11:57923575-57923934;Right=chr11:57924743-57925208
chr11	CG	SV	58350764	58352951	13	.	.	ID=2644;Type=deletion;Left=chr11:58350764-58351050+;Right=chr11:58352595-58352951+;Distance=1831;DiscordantMatePairAlignments=13;LeftRepeat=MER4A1-int:LTR:ERV1;Self chain;RightRepeat=MER4A1:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr11	CG	SV	58350764	58351050	13	+	.	ID=2644;Type=deletion;Left=chr11:58350764-58351050;Right=chr11:58352595-58352951
chr11	CG	SV	58352595	58352951	13	+	.	ID=2644;Type=deletion;Left=chr11:58350764-58351050;Right=chr11:58352595-58352951
chr11	CG	SV	58388350	58393546	40	.	.	ID=2643;Type=deletion;Left=chr11:58388350-58388923+;Right=chr11:58393131-58393546+;Distance=4781;DiscordantMatePairAlignments=40;LeftRepeat=L1M2:LINE:L1;Self chain;RightRepeat=LOR1-int:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	58388350	58388923	40	+	.	ID=2643;Type=deletion;Left=chr11:58388350-58388923;Right=chr11:58393131-58393546
chr11	CG	SV	58393131	58393546	40	+	.	ID=2643;Type=deletion;Left=chr11:58388350-58388923;Right=chr11:58393131-58393546
chr11	CG	SV	60328198	60328957	35	.	.	ID=2642;Type=deletion;Left=chr11:60328198-60328670+;Right=chr11:60328685-60328957+;Distance=487;DiscordantMatePairAlignments=35;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr11	CG	SV	60328198	60328670	35	+	.	ID=2642;Type=deletion;Left=chr11:60328198-60328670;Right=chr11:60328685-60328957
chr11	CG	SV	60328685	60328957	35	+	.	ID=2642;Type=deletion;Left=chr11:60328198-60328670;Right=chr11:60328685-60328957
chr11	CG	SV	63455485	63458520	13	.	.	ID=2641;Type=deletion;Left=chr11:63455485-63455931+;Right=chr11:63458230-63458520+;Distance=2745;DiscordantMatePairAlignments=13;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs67483435 (chr11:63455485-63458230);Frequency=1.00
chr11	CG	SV	63455485	63455931	13	+	.	ID=2641;Type=deletion;Left=chr11:63455485-63455931;Right=chr11:63458230-63458520
chr11	CG	SV	63458230	63458520	13	+	.	ID=2641;Type=deletion;Left=chr11:63455485-63455931;Right=chr11:63458230-63458520
chr11	CG	SV	65775274	65776457	60	.	.	ID=4200;Type=complex;Left=chr11:65775274-65775628+;Right=chr11:65775966-65776457-;Distance=1183;DiscordantMatePairAlignments=60;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr11	CG	SV	65775274	65775628	60	+	.	ID=4200;Type=complex;Left=chr11:65775274-65775628;Right=chr11:65775966-65776457
chr11	CG	SV	65775966	65776457	60	+	.	ID=4200;Type=complex;Left=chr11:65775274-65775628;Right=chr11:65775966-65776457
chr11	CG	SV	65775068	65776828	30	.	.	ID=605;Type=complex;Left=chr11:65775068-65775568-;Right=chr11:65776578-65776828+;Distance=1010;DiscordantMatePairAlignments=30;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr11	CG	SV	65775068	65775568	30	-	.	ID=605;Type=complex;Left=chr11:65775068-65775568;Right=chr11:65776578-65776828
chr11	CG	SV	65776578	65776828	30	-	.	ID=605;Type=complex;Left=chr11:65775068-65775568;Right=chr11:65776578-65776828
chr11	CG	SV	67086662	67089296	19	.	.	ID=2639;Type=deletion;Left=chr11:67086662-67087003+;Right=chr11:67089051-67089296+;Distance=2389;DiscordantMatePairAlignments=19;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	67086662	67087003	19	+	.	ID=2639;Type=deletion;Left=chr11:67086662-67087003;Right=chr11:67089051-67089296
chr11	CG	SV	67089051	67089296	19	+	.	ID=2639;Type=deletion;Left=chr11:67086662-67087003;Right=chr11:67089051-67089296
chr11	CG	SV	69110024	69110895	50	.	.	ID=2638;Type=deletion;Left=chr11:69110024-69110281+;Right=chr11:69110586-69110895+;Distance=562;DiscordantMatePairAlignments=50;LeftRepeat=Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72437253 (chr11:69110024-69110586);Frequency=1.00
chr11	CG	SV	69110024	69110281	50	+	.	ID=2638;Type=deletion;Left=chr11:69110024-69110281;Right=chr11:69110586-69110895
chr11	CG	SV	69110586	69110895	50	+	.	ID=2638;Type=deletion;Left=chr11:69110024-69110281;Right=chr11:69110586-69110895
chr11	CG	SV	69367679	69368231	18	.	.	ID=2637;Type=deletion;Left=chr11:69367679-69368055+;Right=chr11:69367893-69368231+;Distance=214;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;RightRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GAT;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	69367679	69368055	18	+	.	ID=2637;Type=deletion;Left=chr11:69367679-69368055;Right=chr11:69367893-69368231
chr11	CG	SV	69367893	69368231	18	+	.	ID=2637;Type=deletion;Left=chr11:69367679-69368055;Right=chr11:69367893-69368231
chr11	CG	SV	69660203	69662667	80	.	.	ID=2636;Type=deletion;Left=chr11:69660203-69660540+;Right=chr11:69662138-69662667+;Distance=1935;DiscordantMatePairAlignments=80;LeftRepeat=Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=NM_018043:+;NR_030691:+;RightGenes=NM_018043:+;NR_030691:+;XRef=;Frequency=0.06
chr11	CG	SV	69660203	69660540	80	+	.	ID=2636;Type=deletion;Left=chr11:69660203-69660540;Right=chr11:69662138-69662667
chr11	CG	SV	69662138	69662667	80	+	.	ID=2636;Type=deletion;Left=chr11:69660203-69660540;Right=chr11:69662138-69662667
chr11	CG	SV	69894884	69895322	13	.	.	ID=684;Type=tandem-duplication;Left=chr11:69894884-69895101-;Right=chr11:69895150-69895322-;Distance=221;DiscordantMatePairAlignments=13;LeftRepeat=L1MD:LINE:L1;Self chain;Tandem period 27;RightRepeat=L1M5:LINE:L1;Self chain;Tandem period 27;LeftGenes=NM_003626:+;NM_177423:+;RightGenes=NM_003626:+;NM_177423:+;XRef=;Frequency=1.00
chr11	CG	SV	69894884	69895101	13	-	.	ID=684;Type=tandem-duplication;Left=chr11:69894884-69895101;Right=chr11:69895150-69895322
chr11	CG	SV	69895150	69895322	13	-	.	ID=684;Type=tandem-duplication;Left=chr11:69894884-69895101;Right=chr11:69895150-69895322
chr11	CG	SV	77981068	78127010	63	.	.	ID=680;Type=tandem-duplication;Left=chr11:77981068-77981521-;Right=chr11:78126465-78127010-;Distance=145489;DiscordantMatePairAlignments=63;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=MIRb:SINE:MIR;Self chain;LeftGenes=;RightGenes=NM_001098816:-;XRef=;Frequency=0.00
chr11	CG	SV	77981068	77981521	63	-	.	ID=680;Type=tandem-duplication;Left=chr11:77981068-77981521;Right=chr11:78126465-78127010
chr11	CG	SV	78126465	78127010	63	-	.	ID=680;Type=tandem-duplication;Left=chr11:77981068-77981521;Right=chr11:78126465-78127010
chr11	CG	SV	84097602	84108078	45	.	.	ID=679;Type=tandem-duplication;Left=chr11:84097602-84098087-;Right=chr11:84107638-84108078-;Distance=9991;DiscordantMatePairAlignments=45;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001142699:-;NM_001364:-;RightGenes=NM_001142699:-;NM_001364:-;XRef=;Frequency=0.00
chr11	CG	SV	84097602	84098087	45	-	.	ID=679;Type=tandem-duplication;Left=chr11:84097602-84098087;Right=chr11:84107638-84108078
chr11	CG	SV	84107638	84108078	45	-	.	ID=679;Type=tandem-duplication;Left=chr11:84097602-84098087;Right=chr11:84107638-84108078
chr11	CG	SV	85963609	85964845	44	.	.	ID=2632;Type=deletion;Left=chr11:85963609-85964129+;Right=chr11:85964370-85964845+;Distance=761;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001014811:-;NM_001161586:-;NM_006680:-;RightGenes=NM_001014811:-;NM_001161586:-;NM_006680:-;XRef=rs71790699 (chr11:85963609-85964370);Frequency=0.18
chr11	CG	SV	85963609	85964129	44	+	.	ID=2632;Type=deletion;Left=chr11:85963609-85964129;Right=chr11:85964370-85964845
chr11	CG	SV	85964370	85964845	44	+	.	ID=2632;Type=deletion;Left=chr11:85963609-85964129;Right=chr11:85964370-85964845
chr11	CG	SV	97753418	97754269	32	.	.	ID=2627;Type=deletion;Left=chr11:97753418-97753879+;Right=chr11:97753812-97754269+;Distance=394;DiscordantMatePairAlignments=32;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67075251 (chr11:97753418-97753812);Frequency=0.59
chr11	CG	SV	97753418	97753879	32	+	.	ID=2627;Type=deletion;Left=chr11:97753418-97753879;Right=chr11:97753812-97754269
chr11	CG	SV	97753812	97754269	32	+	.	ID=2627;Type=deletion;Left=chr11:97753418-97753879;Right=chr11:97753812-97754269
chr11	CG	SV	99195693	99196517	45	.	.	ID=4195;Type=probable-inversion;Left=chr11:99195693-99196039+;Right=chr11:99196148-99196517-;Distance=824;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=;LeftGenes=NM_014361:+;NM_175566:+;RightGenes=NM_014361:+;NM_175566:+;XRef=;Frequency=1.00
chr11	CG	SV	99195693	99196039	45	+	.	ID=4195;Type=probable-inversion;Left=chr11:99195693-99196039;Right=chr11:99196148-99196517
chr11	CG	SV	99196148	99196517	45	+	.	ID=4195;Type=probable-inversion;Left=chr11:99195693-99196039;Right=chr11:99196148-99196517
chr11	CG	SV	103772961	103778857	43	.	.	ID=2623;Type=deletion;Left=chr11:103772961-103773338+;Right=chr11:103778442-103778857+;Distance=5481;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66562305 (chr11:103772961-103778442);Frequency=0.88
chr11	CG	SV	103772961	103773338	43	+	.	ID=2623;Type=deletion;Left=chr11:103772961-103773338;Right=chr11:103778442-103778857
chr11	CG	SV	103778442	103778857	43	+	.	ID=2623;Type=deletion;Left=chr11:103772961-103773338;Right=chr11:103778442-103778857
chr11	CG	SV	104900088	104900463	11	.	.	ID=678;Type=tandem-duplication;Left=chr11:104900088-104900268-;Right=chr11:104900335-104900463-;Distance=195;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr11	CG	SV	104900088	104900268	11	-	.	ID=678;Type=tandem-duplication;Left=chr11:104900088-104900268;Right=chr11:104900335-104900463
chr11	CG	SV	104900335	104900463	11	-	.	ID=678;Type=tandem-duplication;Left=chr11:104900088-104900268;Right=chr11:104900335-104900463
chr11	CG	SV	113930121	113937524	92	.	.	ID=2621;Type=deletion;Left=chr11:113930121-113930567+;Right=chr11:113937141-113937524+;Distance=7020;DiscordantMatePairAlignments=92;LeftRepeat=MLT1J:LTR:MaLR;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_152315:-;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	113930121	113930567	92	+	.	ID=2621;Type=deletion;Left=chr11:113930121-113930567;Right=chr11:113937141-113937524
chr11	CG	SV	113937141	113937524	92	+	.	ID=2621;Type=deletion;Left=chr11:113930121-113930567;Right=chr11:113937141-113937524
chr11	CG	SV	113938523	130736054	117	.	.	ID=2620;Type=deletion;Left=chr11:113938523-113938957+;Right=chr11:130735676-130736054+;Distance=16797153;DiscordantMatePairAlignments=117;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	113938523	113938957	117	+	.	ID=2620;Type=deletion;Left=chr11:113938523-113938957;Right=chr11:130735676-130736054
chr11	CG	SV	130735676	130736054	117	+	.	ID=2620;Type=deletion;Left=chr11:113938523-113938957;Right=chr11:130735676-130736054
chr11	CG	SV	121852797	121854975	109	.	.	ID=2619;Type=deletion;Left=chr11:121852797-121853190+;Right=chr11:121854501-121854975+;Distance=1704;DiscordantMatePairAlignments=109;LeftRepeat=L1HS:LINE:L1;RightRepeat=GA-rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	121852797	121853190	109	+	.	ID=2619;Type=deletion;Left=chr11:121852797-121853190;Right=chr11:121854501-121854975
chr11	CG	SV	121854501	121854975	109	+	.	ID=2619;Type=deletion;Left=chr11:121852797-121853190;Right=chr11:121854501-121854975
chr11	CG	SV	128187926	128189088	59	.	.	ID=2618;Type=deletion;Left=chr11:128187926-128188407+;Right=chr11:128188620-128189088+;Distance=694;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=;LeftGenes=NM_001167681:+;NM_002017:+;RightGenes=;XRef=rs71759766 (chr11:128187927-128188620);Frequency=0.65
chr11	CG	SV	128187926	128188407	59	+	.	ID=2618;Type=deletion;Left=chr11:128187926-128188407;Right=chr11:128188620-128189088
chr11	CG	SV	128188620	128189088	59	+	.	ID=2618;Type=deletion;Left=chr11:128187926-128188407;Right=chr11:128188620-128189088
chr11	CG	SV	131588836	131589722	20	.	.	ID=2615;Type=deletion;Left=chr11:131588836-131589332+;Right=chr11:131589150-131589722+;Distance=314;DiscordantMatePairAlignments=20;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001048209:+;NM_001144058:+;NM_001144059:+;NM_016522:+;RightGenes=NM_001048209:+;NM_001144058:+;NM_001144059:+;NM_016522:+;XRef=;Frequency=0.65
chr11	CG	SV	131588836	131589332	20	+	.	ID=2615;Type=deletion;Left=chr11:131588836-131589332;Right=chr11:131589150-131589722
chr11	CG	SV	131589150	131589722	20	+	.	ID=2615;Type=deletion;Left=chr11:131588836-131589332;Right=chr11:131589150-131589722
chr11	CG	SV	134110389	134111426	62	.	.	ID=2614;Type=deletion;Left=chr11:134110389-134110830+;Right=chr11:134111073-134111426+;Distance=684;DiscordantMatePairAlignments=62;LeftRepeat=Self chain;Tandem period 36;RightRepeat=Self chain;Tandem period 36;LeftGenes=;RightGenes=;XRef=rs67758116 (chr11:134110307-134110991);Frequency=0.29
chr11	CG	SV	134110389	134110830	62	+	.	ID=2614;Type=deletion;Left=chr11:134110389-134110830;Right=chr11:134111073-134111426
chr11	CG	SV	134111073	134111426	62	+	.	ID=2614;Type=deletion;Left=chr11:134110389-134110830;Right=chr11:134111073-134111426
chr12	CG	SV	899181	900262	17	.	.	ID=2612;Type=deletion;Left=chr12:899181-899783+;Right=chr12:899990-900262+;Distance=809;DiscordantMatePairAlignments=17;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_134424:-;RightGenes=NM_134424:-;XRef=;Frequency=0.82
chr12	CG	SV	899181	899783	17	+	.	ID=2612;Type=deletion;Left=chr12:899181-899783;Right=chr12:899990-900262
chr12	CG	SV	899990	900262	17	+	.	ID=2612;Type=deletion;Left=chr12:899181-899783;Right=chr12:899990-900262
chr12	CG	SV	1185080	1203049	39	.	.	ID=2611;Type=deletion;Left=chr12:1185080-1185290+;Right=chr12:1202604-1203049+;Distance=17524;DiscordantMatePairAlignments=39;LeftRepeat=;RightRepeat=;LeftGenes=NM_178039:+;NM_178040:+;NR_027946:+;NR_027948:+;NR_027949:+;RightGenes=NM_178039:+;NM_178040:+;NR_027946:+;NR_027948:+;NR_027949:+;XRef=;Frequency=0.00
chr12	CG	SV	1185080	1185290	39	+	.	ID=2611;Type=deletion;Left=chr12:1185080-1185290;Right=chr12:1202604-1203049
chr12	CG	SV	1202604	1203049	39	+	.	ID=2611;Type=deletion;Left=chr12:1185080-1185290;Right=chr12:1202604-1203049
chr12	CG	SV	2823194	2823860	10	.	.	ID=2610;Type=deletion;Left=chr12:2823194-2823669+;Right=chr12:2823639-2823860+;Distance=445;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71885446 (chr12:2823194-2823639);Frequency=0.00
chr12	CG	SV	2823194	2823669	10	+	.	ID=2610;Type=deletion;Left=chr12:2823194-2823669;Right=chr12:2823639-2823860
chr12	CG	SV	2823639	2823860	10	+	.	ID=2610;Type=deletion;Left=chr12:2823194-2823669;Right=chr12:2823639-2823860
chr12	CG	SV	4952523	4953690	68	.	.	ID=2609;Type=deletion;Left=chr12:4952523-4952880+;Right=chr12:4953425-4953690+;Distance=902;DiscordantMatePairAlignments=68;LeftRepeat=Self chain;Tandem period 41;RightRepeat=Self chain;Tandem period 41;LeftGenes=;RightGenes=;XRef=rs71064124 (chr12:4952495-4953234);Frequency=1.00
chr12	CG	SV	4952523	4952880	68	+	.	ID=2609;Type=deletion;Left=chr12:4952523-4952880;Right=chr12:4953425-4953690
chr12	CG	SV	4953425	4953690	68	+	.	ID=2609;Type=deletion;Left=chr12:4952523-4952880;Right=chr12:4953425-4953690
chr12	CG	SV	6718000	6719169	14	.	.	ID=2608;Type=deletion;Left=chr12:6718000-6718235+;Right=chr12:6718785-6719169+;Distance=785;DiscordantMatePairAlignments=14;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	6718000	6718235	14	+	.	ID=2608;Type=deletion;Left=chr12:6718000-6718235;Right=chr12:6718785-6719169
chr12	CG	SV	6718785	6719169	14	+	.	ID=2608;Type=deletion;Left=chr12:6718000-6718235;Right=chr12:6718785-6719169
chr12	CG	SV	8908363	8909632	46	.	.	ID=2605;Type=deletion;Left=chr12:8908363-8908833+;Right=chr12:8909389-8909632+;Distance=1026;DiscordantMatePairAlignments=46;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=NM_144670:+;RightGenes=NM_144670:+;XRef=rs71042150 (chr12:8908119-8909146);Frequency=1.00
chr12	CG	SV	8908363	8908833	46	+	.	ID=2605;Type=deletion;Left=chr12:8908363-8908833;Right=chr12:8909389-8909632
chr12	CG	SV	8909389	8909632	46	+	.	ID=2605;Type=deletion;Left=chr12:8908363-8908833;Right=chr12:8909389-8909632
chr12	CG	SV	11083714	11109744	25	.	.	ID=2604;Type=deletion;Left=chr12:11083714-11084120+;Right=chr12:11109331-11109744+;Distance=25617;DiscordantMatePairAlignments=25;LeftRepeat=SegDup;Self chain;RightRepeat=L1MEe:LINE:L1;Self chain;LeftGenes=NM_001098538:-;NM_006250:-;RightGenes=NM_001098538:-;NM_006250:-;XRef=;Frequency=0.59
chr12	CG	SV	11083714	11084120	25	+	.	ID=2604;Type=deletion;Left=chr12:11083714-11084120;Right=chr12:11109331-11109744
chr12	CG	SV	11109331	11109744	25	+	.	ID=2604;Type=deletion;Left=chr12:11083714-11084120;Right=chr12:11109331-11109744
chr12	CG	SV	12435721	12438208	42	.	.	ID=598;Type=distal-duplication;Left=chr12:12435721-12436120-;Right=chr12:12437888-12438208+;Distance=1768;DiscordantMatePairAlignments=42;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_058169:+;RightGenes=NM_058169:+;XRef=;Frequency=1.00
chr12	CG	SV	12435721	12436120	42	-	.	ID=598;Type=distal-duplication;Left=chr12:12435721-12436120;Right=chr12:12437888-12438208
chr12	CG	SV	12437888	12438208	42	-	.	ID=598;Type=distal-duplication;Left=chr12:12435721-12436120;Right=chr12:12437888-12438208
chr12	CG	SV	12436222	12437762	44	.	.	ID=4188;Type=distal-duplication;Left=chr12:12436222-12436578+;Right=chr12:12437519-12437762-;Distance=1540;DiscordantMatePairAlignments=44;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_058169:+;RightGenes=NM_058169:+;XRef=;Frequency=1.00
chr12	CG	SV	12436222	12436578	44	+	.	ID=4188;Type=distal-duplication;Left=chr12:12436222-12436578;Right=chr12:12437519-12437762
chr12	CG	SV	12437519	12437762	44	+	.	ID=4188;Type=distal-duplication;Left=chr12:12436222-12436578;Right=chr12:12437519-12437762
chr12	CG	SV	16311390	16313029	68	.	.	ID=2601;Type=deletion;Left=chr12:16311390-16311827+;Right=chr12:16312550-16313029+;Distance=1160;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67843530 (chr12:16311390-16312549);Frequency=0.59
chr12	CG	SV	16311390	16311827	68	+	.	ID=2601;Type=deletion;Left=chr12:16311390-16311827;Right=chr12:16312550-16313029
chr12	CG	SV	16312550	16313029	68	+	.	ID=2601;Type=deletion;Left=chr12:16311390-16311827;Right=chr12:16312550-16313029
chr12	CG	SV	16373604	16393835	39	.	.	ID=673;Type=tandem-duplication;Left=chr12:16373604-16374001-;Right=chr12:16393406-16393835-;Distance=19834;DiscordantMatePairAlignments=39;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=NM_020300:+;NM_145791:+;NM_145792:+;XRef=;Frequency=0.00
chr12	CG	SV	16373604	16374001	39	-	.	ID=673;Type=tandem-duplication;Left=chr12:16373604-16374001;Right=chr12:16393406-16393835
chr12	CG	SV	16393406	16393835	39	-	.	ID=673;Type=tandem-duplication;Left=chr12:16373604-16374001;Right=chr12:16393406-16393835
chr12	CG	SV	17336083	17337450	28	.	.	ID=2600;Type=deletion;Left=chr12:17336083-17336560+;Right=chr12:17337204-17337450+;Distance=1121;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67412039 (chr12:17336092-17337204);Frequency=0.94
chr12	CG	SV	17336083	17336560	28	+	.	ID=2600;Type=deletion;Left=chr12:17336083-17336560;Right=chr12:17337204-17337450
chr12	CG	SV	17337204	17337450	28	+	.	ID=2600;Type=deletion;Left=chr12:17336083-17336560;Right=chr12:17337204-17337450
chr12	CG	SV	17498636	17499523	16	.	.	ID=2599;Type=deletion;Left=chr12:17498636-17499112+;Right=chr12:17499140-17499523+;Distance=504;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr12	CG	SV	17498636	17499112	16	+	.	ID=2599;Type=deletion;Left=chr12:17498636-17499112;Right=chr12:17499140-17499523
chr12	CG	SV	17499140	17499523	16	+	.	ID=2599;Type=deletion;Left=chr12:17498636-17499112;Right=chr12:17499140-17499523
chr12	CG	SV	24832196	24833419	294	.	.	ID=2594;Type=deletion;Left=chr12:24832196-24832819+;Right=chr12:24832898-24833419+;Distance=702;DiscordantMatePairAlignments=294;LeftRepeat=LTR16A:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr12	CG	SV	24832196	24832819	294	+	.	ID=2594;Type=deletion;Left=chr12:24832196-24832819;Right=chr12:24832898-24833419
chr12	CG	SV	24832898	24833419	294	+	.	ID=2594;Type=deletion;Left=chr12:24832196-24832819;Right=chr12:24832898-24833419
chr12	CG	SV	25847094	124367499	28	.	.	ID=596;Type=complex;Left=chr12:25847094-25847393-;Right=chr12:124367100-124367499+;Distance=98519707;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	25847094	25847393	28	-	.	ID=596;Type=complex;Left=chr12:25847094-25847393;Right=chr12:124367100-124367499
chr12	CG	SV	124367100	124367499	28	-	.	ID=596;Type=complex;Left=chr12:25847094-25847393;Right=chr12:124367100-124367499
chr12	CG	SV	26402304	26403208	20	.	.	ID=2593;Type=deletion;Left=chr12:26402304-26402812+;Right=chr12:26402636-26403208+;Distance=332;DiscordantMatePairAlignments=20;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_002223:-;RightGenes=NM_002223:-;XRef=rs68179015 (chr12:26402304-26402636);Frequency=1.00
chr12	CG	SV	26402304	26402812	20	+	.	ID=2593;Type=deletion;Left=chr12:26402304-26402812;Right=chr12:26402636-26403208
chr12	CG	SV	26402636	26403208	20	+	.	ID=2593;Type=deletion;Left=chr12:26402304-26402812;Right=chr12:26402636-26403208
chr12	CG	SV	27325270	27325975	14	.	.	ID=2592;Type=deletion;Left=chr12:27325270-27325719+;Right=chr12:27325601-27325975+;Distance=331;DiscordantMatePairAlignments=14;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_015000:+;RightGenes=NM_015000:+;XRef=rs72425621 (chr12:27325254-27325585);Frequency=0.88
chr12	CG	SV	27325270	27325719	14	+	.	ID=2592;Type=deletion;Left=chr12:27325270-27325719;Right=chr12:27325601-27325975
chr12	CG	SV	27325601	27325975	14	+	.	ID=2592;Type=deletion;Left=chr12:27325270-27325719;Right=chr12:27325601-27325975
chr12	CG	SV	29464687	29465513	15	.	.	ID=2590;Type=deletion;Left=chr12:29464687-29465218+;Right=chr12:29465028-29465513+;Distance=341;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67756661 (chr12:29464674-29465015);Frequency=0.94
chr12	CG	SV	29464687	29465218	15	+	.	ID=2590;Type=deletion;Left=chr12:29464687-29465218;Right=chr12:29465028-29465513
chr12	CG	SV	29465028	29465513	15	+	.	ID=2590;Type=deletion;Left=chr12:29464687-29465218;Right=chr12:29465028-29465513
chr12	CG	SV	30262584	30263490	19	.	.	ID=2589;Type=deletion;Left=chr12:30262584-30263004+;Right=chr12:30263009-30263490+;Distance=425;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;RightRepeat=Self chain;Tigger3b:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr12	CG	SV	30262584	30263004	19	+	.	ID=2589;Type=deletion;Left=chr12:30262584-30263004;Right=chr12:30263009-30263490
chr12	CG	SV	30263009	30263490	19	+	.	ID=2589;Type=deletion;Left=chr12:30262584-30263004;Right=chr12:30263009-30263490
chr12	CG	SV	30369554	30372796	75	.	.	ID=2588;Type=deletion;Left=chr12:30369554-30370092+;Right=chr12:30372260-30372796+;Distance=2706;DiscordantMatePairAlignments=75;LeftRepeat=LTR41:LTR:ERVL;Self chain;RightRepeat=MER52C:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs66727704 (chr12:30369554-30372260);Frequency=0.41
chr12	CG	SV	30369554	30370092	75	+	.	ID=2588;Type=deletion;Left=chr12:30369554-30370092;Right=chr12:30372260-30372796
chr12	CG	SV	30372260	30372796	75	+	.	ID=2588;Type=deletion;Left=chr12:30369554-30370092;Right=chr12:30372260-30372796
chr12	CG	SV	40524337	40525337	23	.	.	ID=2579;Type=deletion;Left=chr12:40524337-40524793+;Right=chr12:40525161-40525337+;Distance=824;DiscordantMatePairAlignments=23;LeftRepeat=L1HS:LINE:L1;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66498842 (chr12:40524320-40525144);Frequency=0.88
chr12	CG	SV	40524337	40524793	23	+	.	ID=2579;Type=deletion;Left=chr12:40524337-40524793;Right=chr12:40525161-40525337
chr12	CG	SV	40525161	40525337	23	+	.	ID=2579;Type=deletion;Left=chr12:40524337-40524793;Right=chr12:40525161-40525337
chr12	CG	SV	42263727	42266364	240	.	.	ID=2578;Type=deletion;Left=chr12:42263727-42264175+;Right=chr12:42265827-42266364+;Distance=2100;DiscordantMatePairAlignments=240;LeftRepeat=L1P1:LINE:L1;RightRepeat=LTR52:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs67022104 (chr12:42263727-42265827);Frequency=1.00
chr12	CG	SV	42263727	42264175	240	+	.	ID=2578;Type=deletion;Left=chr12:42263727-42264175;Right=chr12:42265827-42266364
chr12	CG	SV	42265827	42266364	240	+	.	ID=2578;Type=deletion;Left=chr12:42263727-42264175;Right=chr12:42265827-42266364
chr12	CG	SV	44189420	44196630	118	.	.	ID=2577;Type=deletion;Left=chr12:44189420-44189904+;Right=chr12:44196206-44196630+;Distance=6786;DiscordantMatePairAlignments=118;LeftRepeat=MSTD-int:LTR:MaLR;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72102706 (chr12:44189420-44196206);Frequency=0.76
chr12	CG	SV	44189420	44189904	118	+	.	ID=2577;Type=deletion;Left=chr12:44189420-44189904;Right=chr12:44196206-44196630
chr12	CG	SV	44196206	44196630	118	+	.	ID=2577;Type=deletion;Left=chr12:44189420-44189904;Right=chr12:44196206-44196630
chr12	CG	SV	45361633	45362515	15	.	.	ID=2576;Type=deletion;Left=chr12:45361633-45362004+;Right=chr12:45361981-45362515+;Distance=348;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6144704 (chr12:45361633-45361981);Frequency=1.00
chr12	CG	SV	45361633	45362004	15	+	.	ID=2576;Type=deletion;Left=chr12:45361633-45362004;Right=chr12:45361981-45362515
chr12	CG	SV	45361981	45362515	15	+	.	ID=2576;Type=deletion;Left=chr12:45361633-45362004;Right=chr12:45361981-45362515
chr12	CG	SV	58808112	58811758	46	.	.	ID=2572;Type=deletion;Left=chr12:58808112-58808560+;Right=chr12:58811308-58811758+;Distance=3196;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71042189 (chr12:58808112-58811308);Frequency=0.59
chr12	CG	SV	58808112	58808560	46	+	.	ID=2572;Type=deletion;Left=chr12:58808112-58808560;Right=chr12:58811308-58811758
chr12	CG	SV	58811308	58811758	46	+	.	ID=2572;Type=deletion;Left=chr12:58808112-58808560;Right=chr12:58811308-58811758
chr12	CG	SV	64813918	64816667	40	.	.	ID=2571;Type=deletion;Left=chr12:64813918-64814364+;Right=chr12:64816159-64816667+;Distance=2241;DiscordantMatePairAlignments=40;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67481727 (chr12:64813918-64816159);Frequency=0.41
chr12	CG	SV	64813918	64814364	40	+	.	ID=2571;Type=deletion;Left=chr12:64813918-64814364;Right=chr12:64816159-64816667
chr12	CG	SV	64816159	64816667	40	+	.	ID=2571;Type=deletion;Left=chr12:64813918-64814364;Right=chr12:64816159-64816667
chr12	CG	SV	67833281	117217340	36	.	.	ID=612;Type=tandem-duplication;Left=chr12:67833281-67833639-;Right=chr12:117217057-117217340-;Distance=49383701;DiscordantMatePairAlignments=36;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=NM_016281:-;XRef=;Frequency=0.59
chr12	CG	SV	67833281	67833639	36	-	.	ID=612;Type=tandem-duplication;Left=chr12:67833281-67833639;Right=chr12:117217057-117217340
chr12	CG	SV	117217057	117217340	36	-	.	ID=612;Type=tandem-duplication;Left=chr12:67833281-67833639;Right=chr12:117217057-117217340
chr12	CG	SV	68881116	68884320	30	.	.	ID=2570;Type=deletion;Left=chr12:68881116-68881450+;Right=chr12:68883847-68884320+;Distance=2731;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;RightRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;LeftGenes=;RightGenes=;XRef=rs67387579 (chr12:68881131-68883862);Frequency=0.88
chr12	CG	SV	68881116	68881450	30	+	.	ID=2570;Type=deletion;Left=chr12:68881116-68881450;Right=chr12:68883847-68884320
chr12	CG	SV	68883847	68884320	30	+	.	ID=2570;Type=deletion;Left=chr12:68881116-68881450;Right=chr12:68883847-68884320
chr12	CG	SV	69818616	69820542	110	.	.	ID=571;Type=distal-duplication;Left=chr12:69818616-69819060-;Right=chr12:69820021-69820542+;Distance=961;DiscordantMatePairAlignments=110;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_004616:-;RightGenes=NM_004616:-;XRef=;Frequency=0.65
chr12	CG	SV	69818616	69819060	110	-	.	ID=571;Type=distal-duplication;Left=chr12:69818616-69819060;Right=chr12:69820021-69820542
chr12	CG	SV	69820021	69820542	110	-	.	ID=571;Type=distal-duplication;Left=chr12:69818616-69819060;Right=chr12:69820021-69820542
chr12	CG	SV	69819544	69820019	141	.	.	ID=4184;Type=distal-duplication;Left=chr12:69819544-69820011+;Right=chr12:69819555-69820019-;Distance=475;DiscordantMatePairAlignments=141;LeftRepeat=(TGAA)n:Simple_repeat:Simple_repeat;RightRepeat=L2:LINE:L2;LeftGenes=NM_004616:-;RightGenes=NM_004616:-;XRef=;Frequency=0.65
chr12	CG	SV	69819544	69820011	141	+	.	ID=4184;Type=distal-duplication;Left=chr12:69819544-69820011;Right=chr12:69819555-69820019
chr12	CG	SV	69819555	69820019	141	+	.	ID=4184;Type=distal-duplication;Left=chr12:69819544-69820011;Right=chr12:69819555-69820019
chr12	CG	SV	70642948	70644765	15	.	.	ID=2569;Type=deletion;Left=chr12:70642948-70643354+;Right=chr12:70644512-70644765+;Distance=1564;DiscordantMatePairAlignments=15;LeftRepeat=AluSg/x:SINE:Alu;Self chain;RightRepeat=Tandem period 9;LeftGenes=NM_173353:+;RightGenes=NM_173353:+;XRef=rs72355357 (chr12:70642775-70644339);Frequency=1.00
chr12	CG	SV	70642948	70643354	15	+	.	ID=2569;Type=deletion;Left=chr12:70642948-70643354;Right=chr12:70644512-70644765
chr12	CG	SV	70644512	70644765	15	+	.	ID=2569;Type=deletion;Left=chr12:70642948-70643354;Right=chr12:70644512-70644765
chr12	CG	SV	78678384	78686722	57	.	.	ID=615;Type=tandem-duplication;Left=chr12:78678384-78678839-;Right=chr12:78686449-78686722-;Distance=7883;DiscordantMatePairAlignments=57;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr12	CG	SV	78678384	78678839	57	-	.	ID=615;Type=tandem-duplication;Left=chr12:78678384-78678839;Right=chr12:78686449-78686722
chr12	CG	SV	78686449	78686722	57	-	.	ID=615;Type=tandem-duplication;Left=chr12:78678384-78678839;Right=chr12:78686449-78686722
chr12	CG	SV	80663845	80668840	76	.	.	ID=2568;Type=deletion;Left=chr12:80663845-80664282+;Right=chr12:80668449-80668840+;Distance=4604;DiscordantMatePairAlignments=76;LeftRepeat=;RightRepeat=;LeftGenes=NM_003625:-;RightGenes=NM_003625:-;XRef=;Frequency=0.12
chr12	CG	SV	80663845	80664282	76	+	.	ID=2568;Type=deletion;Left=chr12:80663845-80664282;Right=chr12:80668449-80668840
chr12	CG	SV	80668449	80668840	76	+	.	ID=2568;Type=deletion;Left=chr12:80663845-80664282;Right=chr12:80668449-80668840
chr12	CG	SV	82368191	82369197	54	.	.	ID=2567;Type=deletion;Left=chr12:82368191-82368554+;Right=chr12:82368755-82369197+;Distance=564;DiscordantMatePairAlignments=54;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66762260 (chr12:82368175-82368739);Frequency=0.82
chr12	CG	SV	82368191	82368554	54	+	.	ID=2567;Type=deletion;Left=chr12:82368191-82368554;Right=chr12:82368755-82369197
chr12	CG	SV	82368755	82369197	54	+	.	ID=2567;Type=deletion;Left=chr12:82368191-82368554;Right=chr12:82368755-82369197
chr12	CG	SV	83117240	83120666	37	.	.	ID=2566;Type=deletion;Left=chr12:83117240-83117609+;Right=chr12:83120143-83120666+;Distance=2903;DiscordantMatePairAlignments=37;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72045293 (chr12:83117245-83120148);Frequency=0.71
chr12	CG	SV	83117240	83117609	37	+	.	ID=2566;Type=deletion;Left=chr12:83117240-83117609;Right=chr12:83120143-83120666
chr12	CG	SV	83120143	83120666	37	+	.	ID=2566;Type=deletion;Left=chr12:83117240-83117609;Right=chr12:83120143-83120666
chr12	CG	SV	92367795	92370548	52	.	.	ID=613;Type=tandem-duplication;Left=chr12:92367795-92368475-;Right=chr12:92370335-92370548-;Distance=2073;DiscordantMatePairAlignments=52;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr12	CG	SV	92367795	92368475	52	-	.	ID=613;Type=tandem-duplication;Left=chr12:92367795-92368475;Right=chr12:92370335-92370548
chr12	CG	SV	92370335	92370548	52	-	.	ID=613;Type=tandem-duplication;Left=chr12:92367795-92368475;Right=chr12:92370335-92370548
chr12	CG	SV	93768157	93768796	19	.	.	ID=2562;Type=deletion;Left=chr12:93768157-93768611+;Right=chr12:93768580-93768796+;Distance=423;DiscordantMatePairAlignments=19;LeftRepeat=L1MA4A:LINE:L1;RightRepeat=MSTB1:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr12	CG	SV	93768157	93768611	19	+	.	ID=2562;Type=deletion;Left=chr12:93768157-93768611;Right=chr12:93768580-93768796
chr12	CG	SV	93768580	93768796	19	+	.	ID=2562;Type=deletion;Left=chr12:93768157-93768611;Right=chr12:93768580-93768796
chr12	CG	SV	94757723	94761018	23	.	.	ID=2561;Type=deletion;Left=chr12:94757723-94758178+;Right=chr12:94760469-94761018+;Distance=2746;DiscordantMatePairAlignments=23;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66521162 (chr12:94757723-94760469);Frequency=0.94
chr12	CG	SV	94757723	94758178	23	+	.	ID=2561;Type=deletion;Left=chr12:94757723-94758178;Right=chr12:94760469-94761018
chr12	CG	SV	94760469	94761018	23	+	.	ID=2561;Type=deletion;Left=chr12:94757723-94758178;Right=chr12:94760469-94761018
chr12	CG	SV	100626541	100631545	23	.	.	ID=2558;Type=deletion;Left=chr12:100626541-100626761+;Right=chr12:100631221-100631545+;Distance=4680;DiscordantMatePairAlignments=23;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L1MEc:LINE:L1;LeftGenes=NM_020244:+;RightGenes=NM_020244:+;XRef=;Frequency=0.53
chr12	CG	SV	100626541	100626761	23	+	.	ID=2558;Type=deletion;Left=chr12:100626541-100626761;Right=chr12:100631221-100631545
chr12	CG	SV	100631221	100631545	23	+	.	ID=2558;Type=deletion;Left=chr12:100626541-100626761;Right=chr12:100631221-100631545
chr12	CG	SV	102883559	124367618	72	.	.	ID=570;Type=complex;Left=chr12:102883559-102883759-;Right=chr12:124367100-124367618+;Distance=21483341;DiscordantMatePairAlignments=72;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_003211:+;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	102883559	102883759	72	-	.	ID=570;Type=complex;Left=chr12:102883559-102883759;Right=chr12:124367100-124367618
chr12	CG	SV	124367100	124367618	72	-	.	ID=570;Type=complex;Left=chr12:102883559-102883759;Right=chr12:124367100-124367618
chr12	CG	SV	104297655	104298483	22	.	.	ID=2552;Type=deletion;Left=chr12:104297655-104298137+;Right=chr12:104298066-104298483+;Distance=411;DiscordantMatePairAlignments=22;LeftRepeat=AluY:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs71843479 (chr12:104297644-104297968);Frequency=0.88
chr12	CG	SV	104297655	104298137	22	+	.	ID=2552;Type=deletion;Left=chr12:104297655-104298137;Right=chr12:104298066-104298483
chr12	CG	SV	104298066	104298483	22	+	.	ID=2552;Type=deletion;Left=chr12:104297655-104298137;Right=chr12:104298066-104298483
chr12	CG	SV	114561908	114564824	13	.	.	ID=2550;Type=deletion;Left=chr12:114561908-114561985+;Right=chr12:114564288-114564824+;Distance=2380;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67352178 (chr12:114561908-114564286);Frequency=0.53
chr12	CG	SV	114561908	114561985	13	+	.	ID=2550;Type=deletion;Left=chr12:114561908-114561985;Right=chr12:114564288-114564824
chr12	CG	SV	114564288	114564824	13	+	.	ID=2550;Type=deletion;Left=chr12:114561908-114561985;Right=chr12:114564288-114564824
chr12	CG	SV	121576304	121577139	12	.	.	ID=2549;Type=deletion;Left=chr12:121576304-121576714+;Right=chr12:121576633-121577139+;Distance=329;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_023012:-;NM_198261:-;NM_198262:-;RightGenes=NM_023012:-;NM_198261:-;NM_198262:-;XRef=rs10526242 (chr12:121576299-121576628);Frequency=0.82
chr12	CG	SV	121576304	121576714	12	+	.	ID=2549;Type=deletion;Left=chr12:121576304-121576714;Right=chr12:121576633-121577139
chr12	CG	SV	121576633	121577139	12	+	.	ID=2549;Type=deletion;Left=chr12:121576304-121576714;Right=chr12:121576633-121577139
chr12	CG	SV	125349468	125356175	135	.	.	ID=2545;Type=deletion;Left=chr12:125349468-125349976+;Right=chr12:125355562-125356175+;Distance=6094;DiscordantMatePairAlignments=135;LeftRepeat=MSTB1:LTR:MaLR;Self chain;Tandem T;RightRepeat=MSTB1:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr12	CG	SV	125349468	125349976	135	+	.	ID=2545;Type=deletion;Left=chr12:125349468-125349976;Right=chr12:125355562-125356175
chr12	CG	SV	125355562	125356175	135	+	.	ID=2545;Type=deletion;Left=chr12:125349468-125349976;Right=chr12:125355562-125356175
chr12	CG	SV	126957017	126957893	18	.	.	ID=4182;Type=probable-inversion;Left=chr12:126957017-126957432+;Right=chr12:126957791-126957893-;Distance=876;DiscordantMatePairAlignments=18;LeftRepeat=L1ME1:LINE:L1;Self chain;RightRepeat=L1ME1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	126957017	126957432	18	+	.	ID=4182;Type=probable-inversion;Left=chr12:126957017-126957432;Right=chr12:126957791-126957893
chr12	CG	SV	126957791	126957893	18	+	.	ID=4182;Type=probable-inversion;Left=chr12:126957017-126957432;Right=chr12:126957791-126957893
chr12	CG	SV	129932858	129933568	22	.	.	ID=2540;Type=deletion;Left=chr12:129932858-129933361+;Right=chr12:129933402-129933568+;Distance=544;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;Tandem period 134;Tandem period 68;RightRepeat=Self chain;Tandem period 134;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr12	CG	SV	129932858	129933361	22	+	.	ID=2540;Type=deletion;Left=chr12:129932858-129933361;Right=chr12:129933402-129933568
chr12	CG	SV	129933402	129933568	22	+	.	ID=2540;Type=deletion;Left=chr12:129932858-129933361;Right=chr12:129933402-129933568
chr12	CG	SV	130118084	130118744	11	.	.	ID=2539;Type=deletion;Left=chr12:130118084-130118557+;Right=chr12:130118546-130118744+;Distance=462;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 102;Tandem period 42;Tandem period 60;RightRepeat=Self chain;Tandem period 60;LeftGenes=NM_198827:+;RightGenes=NM_198827:+;XRef=;Frequency=0.29
chr12	CG	SV	130118084	130118557	11	+	.	ID=2539;Type=deletion;Left=chr12:130118084-130118557;Right=chr12:130118546-130118744
chr12	CG	SV	130118546	130118744	11	+	.	ID=2539;Type=deletion;Left=chr12:130118084-130118557;Right=chr12:130118546-130118744
chr12	CG	SV	130318696	130453002	12	.	.	ID=4181;Type=probable-inversion;Left=chr12:130318696-130319212+;Right=chr12:130452919-130453002-;Distance=134306;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr12	CG	SV	130318696	130319212	12	+	.	ID=4181;Type=probable-inversion;Left=chr12:130318696-130319212;Right=chr12:130452919-130453002
chr12	CG	SV	130452919	130453002	12	+	.	ID=4181;Type=probable-inversion;Left=chr12:130318696-130319212;Right=chr12:130452919-130453002
chr12	CG	SV	131452393	131453141	35	.	.	ID=2538;Type=deletion;Left=chr12:131452393-131452852+;Right=chr12:131452806-131453141+;Distance=413;DiscordantMatePairAlignments=35;LeftRepeat=Self chain;Tandem period 118;Tandem period 59;RightRepeat=Self chain;Tandem period 118;Tandem period 59;LeftGenes=;RightGenes=;XRef=rs72417838 (chr12:131452469-131452823);Frequency=0.88
chr12	CG	SV	131452393	131452852	35	+	.	ID=2538;Type=deletion;Left=chr12:131452393-131452852;Right=chr12:131452806-131453141
chr12	CG	SV	131452806	131453141	35	+	.	ID=2538;Type=deletion;Left=chr12:131452393-131452852;Right=chr12:131452806-131453141
chr13	CG	SV	25948044	25950798	11	.	.	ID=2534;Type=deletion;Left=chr13:25948044-25948286+;Right=chr13:25950189-25950798+;Distance=2145;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr13	CG	SV	25948044	25948286	11	+	.	ID=2534;Type=deletion;Left=chr13:25948044-25948286;Right=chr13:25950189-25950798
chr13	CG	SV	25950189	25950798	11	+	.	ID=2534;Type=deletion;Left=chr13:25948044-25948286;Right=chr13:25950189-25950798
chr13	CG	SV	26444607	26445687	10	.	.	ID=577;Type=tandem-duplication;Left=chr13:26444607-26444990-;Right=chr13:26445534-26445687-;Distance=697;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr13	CG	SV	26444607	26444990	10	-	.	ID=577;Type=tandem-duplication;Left=chr13:26444607-26444990;Right=chr13:26445534-26445687
chr13	CG	SV	26445534	26445687	10	-	.	ID=577;Type=tandem-duplication;Left=chr13:26444607-26444990;Right=chr13:26445534-26445687
chr13	CG	SV	30094960	30096335	146	.	.	ID=2530;Type=deletion;Left=chr13:30094960-30095488+;Right=chr13:30095771-30096335+;Distance=811;DiscordantMatePairAlignments=146;LeftRepeat=;RightRepeat=MER21B:LTR:ERV1;LeftGenes=NM_005800:+;RightGenes=NM_005800:+;XRef=;Frequency=0.00
chr13	CG	SV	30094960	30095488	146	+	.	ID=2530;Type=deletion;Left=chr13:30094960-30095488;Right=chr13:30095771-30096335
chr13	CG	SV	30095771	30096335	146	+	.	ID=2530;Type=deletion;Left=chr13:30094960-30095488;Right=chr13:30095771-30096335
chr13	CG	SV	32129085	32129447	25	-	.	ID=564;Type=interchromosomal;Left=chr13:32129085-32129447-;Right=chr19:9804855-9805250+;Distance=;DiscordantMatePairAlignments=25;LeftRepeat=L1PA14:LINE:L1;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_015032:+;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	9804855	9805250	25	-	.	ID=564;Type=interchromosomal;Left=chr13:32129085-32129447-;Right=chr19:9804855-9805250+;Distance=;DiscordantMatePairAlignments=25;LeftRepeat=L1PA14:LINE:L1;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_015032:+;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	32230863	32231235	69	+	.	ID=4032;Type=complex;Left=chr13:32230863-32231235+;Right=chr20:18542247-18542725-;Distance=;DiscordantMatePairAlignments=69;LeftRepeat=Self chain;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_015032:+;RightGenes=NM_080820:+;XRef=;Frequency=0.00
chr20	CG	SV	18542247	18542725	69	+	.	ID=4032;Type=complex;Left=chr13:32230863-32231235+;Right=chr20:18542247-18542725-;Distance=;DiscordantMatePairAlignments=69;LeftRepeat=Self chain;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_015032:+;RightGenes=NM_080820:+;XRef=;Frequency=0.00
chr13	CG	SV	32394106	32542448	12	.	.	ID=562;Type=complex;Left=chr13:32394106-32394179-;Right=chr13:32541871-32542448+;Distance=147692;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	32394106	32394179	12	-	.	ID=562;Type=complex;Left=chr13:32394106-32394179;Right=chr13:32541871-32542448
chr13	CG	SV	32541871	32542448	12	-	.	ID=562;Type=complex;Left=chr13:32394106-32394179;Right=chr13:32541871-32542448
chr13	CG	SV	32394129	32549436	16	.	.	ID=576;Type=complex;Left=chr13:32394129-32394492-;Right=chr13:32548963-32549436-;Distance=154944;DiscordantMatePairAlignments=16;LeftRepeat=LTR16D:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	32394129	32394492	16	-	.	ID=576;Type=complex;Left=chr13:32394129-32394492;Right=chr13:32548963-32549436
chr13	CG	SV	32548963	32549436	16	-	.	ID=576;Type=complex;Left=chr13:32394129-32394492;Right=chr13:32548963-32549436
chr13	CG	SV	32399223	32641774	19	.	.	ID=575;Type=tandem-duplication;Left=chr13:32399223-32399549-;Right=chr13:32641339-32641774-;Distance=242225;DiscordantMatePairAlignments=19;LeftRepeat=L1ME1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=NM_052851:-;NM_178006:-;NM_178007:-;XRef=;Frequency=0.00
chr13	CG	SV	32399223	32399549	19	-	.	ID=575;Type=tandem-duplication;Left=chr13:32399223-32399549;Right=chr13:32641339-32641774
chr13	CG	SV	32641339	32641774	19	-	.	ID=575;Type=tandem-duplication;Left=chr13:32399223-32399549;Right=chr13:32641339-32641774
chr13	CG	SV	32640343	32640844	88	-	.	ID=561;Type=interchromosomal;Left=chr13:32640343-32640844-;Right=chr20:19930868-19931535+;Distance=;DiscordantMatePairAlignments=88;LeftRepeat=;RightRepeat=;LeftGenes=NM_052851:-;NM_178006:-;NM_178007:-;RightGenes=NM_018993:+;XRef=;Frequency=0.00
chr20	CG	SV	19930868	19931535	88	-	.	ID=561;Type=interchromosomal;Left=chr13:32640343-32640844-;Right=chr20:19930868-19931535+;Distance=;DiscordantMatePairAlignments=88;LeftRepeat=;RightRepeat=;LeftGenes=NM_052851:-;NM_178006:-;NM_178007:-;RightGenes=NM_018993:+;XRef=;Frequency=0.00
chr13	CG	SV	32666541	32667041	66	-	.	ID=560;Type=interchromosomal;Left=chr13:32666541-32667041-;Right=chr21:45619920-45620358-;Distance=;DiscordantMatePairAlignments=66;LeftRepeat=;RightRepeat=Self chain;Tandem period 11;Tandem period 25;Tandem period 36;Tandem period 61;LeftGenes=NM_052851:-;NM_178006:-;RightGenes=;XRef=;Frequency=0.00
chr21	CG	SV	45619920	45620358	66	-	.	ID=560;Type=interchromosomal;Left=chr13:32666541-32667041-;Right=chr21:45619920-45620358-;Distance=;DiscordantMatePairAlignments=66;LeftRepeat=;RightRepeat=Self chain;Tandem period 11;Tandem period 25;Tandem period 36;Tandem period 61;LeftGenes=NM_052851:-;NM_178006:-;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	36312467	36313049	11	.	.	ID=2524;Type=deletion;Left=chr13:36312467-36313156+;Right=chr13:36312787-36313049+;Distance=320;DiscordantMatePairAlignments=11;LeftRepeat=LTR1:LTR:ERV1;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	36312467	36313156	11	+	.	ID=2524;Type=deletion;Left=chr13:36312467-36313156;Right=chr13:36312787-36313049
chr13	CG	SV	36312787	36313049	11	+	.	ID=2524;Type=deletion;Left=chr13:36312467-36313156;Right=chr13:36312787-36313049
chr13	CG	SV	36969943	36984079	17	.	.	ID=2523;Type=deletion;Left=chr13:36969943-36970258+;Right=chr13:36983580-36984079+;Distance=13637;DiscordantMatePairAlignments=17;LeftRepeat=AluSg/x:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr13	CG	SV	36969943	36970258	17	+	.	ID=2523;Type=deletion;Left=chr13:36969943-36970258;Right=chr13:36983580-36984079
chr13	CG	SV	36983580	36984079	17	+	.	ID=2523;Type=deletion;Left=chr13:36969943-36970258;Right=chr13:36983580-36984079
chr13	CG	SV	37955319	37958695	42	.	.	ID=2522;Type=deletion;Left=chr13:37955319-37955833+;Right=chr13:37958205-37958695+;Distance=2886;DiscordantMatePairAlignments=42;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71695759 (chr13:37955315-37958201);Frequency=0.94
chr13	CG	SV	37955319	37955833	42	+	.	ID=2522;Type=deletion;Left=chr13:37955319-37955833;Right=chr13:37958205-37958695
chr13	CG	SV	37958205	37958695	42	+	.	ID=2522;Type=deletion;Left=chr13:37955319-37955833;Right=chr13:37958205-37958695
chr13	CG	SV	41844892	41845652	146	.	.	ID=573;Type=tandem-duplication;Left=chr13:41844892-41845268-;Right=chr13:41845295-41845652-;Distance=384;DiscordantMatePairAlignments=146;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr13	CG	SV	41844892	41845268	146	-	.	ID=573;Type=tandem-duplication;Left=chr13:41844892-41845268;Right=chr13:41845295-41845652
chr13	CG	SV	41845295	41845652	146	-	.	ID=573;Type=tandem-duplication;Left=chr13:41844892-41845268;Right=chr13:41845295-41845652
chr13	CG	SV	41951318	41952470	54	.	.	ID=2521;Type=deletion;Left=chr13:41951318-41951716+;Right=chr13:41951962-41952470+;Distance=644;DiscordantMatePairAlignments=54;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72375475 (chr13:41951191-41951835);Frequency=0.29
chr13	CG	SV	41951318	41951716	54	+	.	ID=2521;Type=deletion;Left=chr13:41951318-41951716;Right=chr13:41951962-41952470
chr13	CG	SV	41951962	41952470	54	+	.	ID=2521;Type=deletion;Left=chr13:41951318-41951716;Right=chr13:41951962-41952470
chr13	CG	SV	42437800	42440050	353	.	.	ID=2520;Type=deletion;Left=chr13:42437800-42438313+;Right=chr13:42439453-42440050+;Distance=1653;DiscordantMatePairAlignments=353;LeftRepeat=;RightRepeat=;LeftGenes=NM_001002264:-;NM_033255:-;RightGenes=NM_001002264:-;NM_033255:-;XRef=rs67713275 (chr13:42437794-42439447);Frequency=0.82
chr13	CG	SV	42437800	42438313	353	+	.	ID=2520;Type=deletion;Left=chr13:42437800-42438313;Right=chr13:42439453-42440050
chr13	CG	SV	42439453	42440050	353	+	.	ID=2520;Type=deletion;Left=chr13:42437800-42438313;Right=chr13:42439453-42440050
chr13	CG	SV	44903455	44904093	27	.	.	ID=2519;Type=deletion;Left=chr13:44903455-44903962+;Right=chr13:44903792-44904093+;Distance=337;DiscordantMatePairAlignments=27;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	44903455	44903962	27	+	.	ID=2519;Type=deletion;Left=chr13:44903455-44903962;Right=chr13:44903792-44904093
chr13	CG	SV	44903792	44904093	27	+	.	ID=2519;Type=deletion;Left=chr13:44903455-44903962;Right=chr13:44903792-44904093
chr13	CG	SV	49967349	49973569	69	.	.	ID=2515;Type=deletion;Left=chr13:49967349-49967768+;Right=chr13:49973081-49973569+;Distance=5732;DiscordantMatePairAlignments=69;LeftRepeat=Self chain;RightRepeat=MSTB-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67883993 (chr13:49967351-49973083);Frequency=0.94
chr13	CG	SV	49967349	49967768	69	+	.	ID=2515;Type=deletion;Left=chr13:49967349-49967768;Right=chr13:49973081-49973569
chr13	CG	SV	49973081	49973569	69	+	.	ID=2515;Type=deletion;Left=chr13:49967349-49967768;Right=chr13:49973081-49973569
chr13	CG	SV	60451037	60452215	29	.	.	ID=2511;Type=deletion;Left=chr13:60451037-60451425+;Right=chr13:60451869-60452215+;Distance=832;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=L1M3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr13	CG	SV	60451037	60451425	29	+	.	ID=2511;Type=deletion;Left=chr13:60451037-60451425;Right=chr13:60451869-60452215
chr13	CG	SV	60451869	60452215	29	+	.	ID=2511;Type=deletion;Left=chr13:60451037-60451425;Right=chr13:60451869-60452215
chr13	CG	SV	72972922	72973672	12	.	.	ID=2503;Type=deletion;Left=chr13:72972922-72973430+;Right=chr13:72973250-72973672+;Distance=328;DiscordantMatePairAlignments=12;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10704972 (chr13:72972922-72973250);Frequency=0.94
chr13	CG	SV	72972922	72973430	12	+	.	ID=2503;Type=deletion;Left=chr13:72972922-72973430;Right=chr13:72973250-72973672
chr13	CG	SV	72973250	72973672	12	+	.	ID=2503;Type=deletion;Left=chr13:72972922-72973430;Right=chr13:72973250-72973672
chr13	CG	SV	77662970	77666420	46	.	.	ID=2493;Type=deletion;Left=chr13:77662970-77663390+;Right=chr13:77665838-77666420+;Distance=2868;DiscordantMatePairAlignments=46;LeftRepeat=MER21B:LTR:ERV1;RightRepeat=L1MEc:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr13	CG	SV	77662970	77663390	46	+	.	ID=2493;Type=deletion;Left=chr13:77662970-77663390;Right=chr13:77665838-77666420
chr13	CG	SV	77665838	77666420	46	+	.	ID=2493;Type=deletion;Left=chr13:77662970-77663390;Right=chr13:77665838-77666420
chr13	CG	SV	77895634	77897124	39	.	.	ID=2492;Type=deletion;Left=chr13:77895634-77896018+;Right=chr13:77896744-77897124+;Distance=1110;DiscordantMatePairAlignments=39;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71729399 (chr13:77895641-77896751);Frequency=0.53
chr13	CG	SV	77895634	77896018	39	+	.	ID=2492;Type=deletion;Left=chr13:77895634-77896018;Right=chr13:77896744-77897124
chr13	CG	SV	77896744	77897124	39	+	.	ID=2492;Type=deletion;Left=chr13:77895634-77896018;Right=chr13:77896744-77897124
chr13	CG	SV	80645256	80645963	15	.	.	ID=2490;Type=deletion;Left=chr13:80645256-80645785+;Right=chr13:80645584-80645963+;Distance=328;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67616974 (chr13:80645237-80645565);Frequency=0.94
chr13	CG	SV	80645256	80645785	15	+	.	ID=2490;Type=deletion;Left=chr13:80645256-80645785;Right=chr13:80645584-80645963
chr13	CG	SV	80645584	80645963	15	+	.	ID=2490;Type=deletion;Left=chr13:80645256-80645785;Right=chr13:80645584-80645963
chr13	CG	SV	81254791	81255410	11	.	.	ID=554;Type=probable-inversion;Left=chr13:81254791-81254877-;Right=chr13:81254977-81255410+;Distance=100;DiscordantMatePairAlignments=11;LeftRepeat=HERVL40:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	81254791	81254877	11	-	.	ID=554;Type=probable-inversion;Left=chr13:81254791-81254877;Right=chr13:81254977-81255410
chr13	CG	SV	81254977	81255410	11	-	.	ID=554;Type=probable-inversion;Left=chr13:81254791-81254877;Right=chr13:81254977-81255410
chr13	CG	SV	84960033	85019936	11	.	.	ID=555;Type=tandem-duplication;Left=chr13:84960033-84960512-;Right=chr13:85019725-85019936-;Distance=59424;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=MSTC-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	84960033	84960512	11	-	.	ID=555;Type=tandem-duplication;Left=chr13:84960033-84960512;Right=chr13:85019725-85019936
chr13	CG	SV	85019725	85019936	11	-	.	ID=555;Type=tandem-duplication;Left=chr13:84960033-84960512;Right=chr13:85019725-85019936
chr13	CG	SV	89660856	89663242	52	.	.	ID=2489;Type=deletion;Left=chr13:89660856-89661300+;Right=chr13:89662811-89663242+;Distance=1955;DiscordantMatePairAlignments=52;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr13	CG	SV	89660856	89661300	52	+	.	ID=2489;Type=deletion;Left=chr13:89660856-89661300;Right=chr13:89662811-89663242
chr13	CG	SV	89662811	89663242	52	+	.	ID=2489;Type=deletion;Left=chr13:89660856-89661300;Right=chr13:89662811-89663242
chr13	CG	SV	89854728	89855707	36	.	.	ID=2488;Type=deletion;Left=chr13:89854728-89855236+;Right=chr13:89855207-89855707+;Distance=479;DiscordantMatePairAlignments=36;LeftRepeat=MER52A:LTR:ERV1;RightRepeat=MER52A:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	89854728	89855236	36	+	.	ID=2488;Type=deletion;Left=chr13:89854728-89855236;Right=chr13:89855207-89855707
chr13	CG	SV	89855207	89855707	36	+	.	ID=2488;Type=deletion;Left=chr13:89854728-89855236;Right=chr13:89855207-89855707
chr13	CG	SV	92042636	92044324	34	.	.	ID=2487;Type=deletion;Left=chr13:92042636-92043105+;Right=chr13:92044030-92044324+;Distance=1394;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_004466:+;RightGenes=NM_004466:+;XRef=;Frequency=0.00
chr13	CG	SV	92042636	92043105	34	+	.	ID=2487;Type=deletion;Left=chr13:92042636-92043105;Right=chr13:92044030-92044324
chr13	CG	SV	92044030	92044324	34	+	.	ID=2487;Type=deletion;Left=chr13:92042636-92043105;Right=chr13:92044030-92044324
chr13	CG	SV	93952281	93953114	16	.	.	ID=2486;Type=deletion;Left=chr13:93952281-93952720+;Right=chr13:93952541-93953114+;Distance=260;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 52;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67599929 (chr13:93952281-93952541);Frequency=0.65
chr13	CG	SV	93952281	93952720	16	+	.	ID=2486;Type=deletion;Left=chr13:93952281-93952720;Right=chr13:93952541-93953114
chr13	CG	SV	93952541	93953114	16	+	.	ID=2486;Type=deletion;Left=chr13:93952281-93952720;Right=chr13:93952541-93953114
chr13	CG	SV	96739659	96742669	29	.	.	ID=2484;Type=deletion;Left=chr13:96739659-96739908+;Right=chr13:96742213-96742669+;Distance=2554;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_144778:+;NM_207304:+;RightGenes=NM_144778:+;NM_207304:+;XRef=;Frequency=0.00
chr13	CG	SV	96739659	96739908	29	+	.	ID=2484;Type=deletion;Left=chr13:96739659-96739908;Right=chr13:96742213-96742669
chr13	CG	SV	96742213	96742669	29	+	.	ID=2484;Type=deletion;Left=chr13:96739659-96739908;Right=chr13:96742213-96742669
chr13	CG	SV	97302647	97303318	16	.	.	ID=552;Type=tandem-duplication;Left=chr13:97302647-97302949-;Right=chr13:97302982-97303318-;Distance=369;DiscordantMatePairAlignments=16;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Tandem TGGA;RightRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Tandem GATG;Tandem period 12;Tandem period 8;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr13	CG	SV	97302647	97302949	16	-	.	ID=552;Type=tandem-duplication;Left=chr13:97302647-97302949;Right=chr13:97302982-97303318
chr13	CG	SV	97302982	97303318	16	-	.	ID=552;Type=tandem-duplication;Left=chr13:97302647-97302949;Right=chr13:97302982-97303318
chr13	CG	SV	100692147	100694884	39	.	.	ID=2482;Type=deletion;Left=chr13:100692147-100692680+;Right=chr13:100694428-100694884+;Distance=2281;DiscordantMatePairAlignments=39;LeftRepeat=L1MEd:LINE:L1;RightRepeat=;LeftGenes=NM_052867:-;RightGenes=NM_052867:-;XRef=rs71085658 (chr13:100692147-100694428);Frequency=0.82
chr13	CG	SV	100692147	100692680	39	+	.	ID=2482;Type=deletion;Left=chr13:100692147-100692680;Right=chr13:100694428-100694884
chr13	CG	SV	100694428	100694884	39	+	.	ID=2482;Type=deletion;Left=chr13:100692147-100692680;Right=chr13:100694428-100694884
chr13	CG	SV	102729653	102730485	14	.	.	ID=2480;Type=deletion;Left=chr13:102729653-102730152+;Right=chr13:102729968-102730485+;Distance=315;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67914131 (chr13:102729644-102729959);Frequency=0.65
chr13	CG	SV	102729653	102730152	14	+	.	ID=2480;Type=deletion;Left=chr13:102729653-102730152;Right=chr13:102729968-102730485
chr13	CG	SV	102729968	102730485	14	+	.	ID=2480;Type=deletion;Left=chr13:102729653-102730152;Right=chr13:102729968-102730485
chr13	CG	SV	102889766	102890622	12	.	.	ID=2478;Type=deletion;Left=chr13:102889766-102890306+;Right=chr13:102890248-102890622+;Distance=482;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66669025 (chr13:102889766-102890248);Frequency=1.00
chr13	CG	SV	102889766	102890306	12	+	.	ID=2478;Type=deletion;Left=chr13:102889766-102890306;Right=chr13:102890248-102890622
chr13	CG	SV	102890248	102890622	12	+	.	ID=2478;Type=deletion;Left=chr13:102889766-102890306;Right=chr13:102890248-102890622
chr13	CG	SV	108159749	108160816	40	.	.	ID=2476;Type=deletion;Left=chr13:108159749-108160205+;Right=chr13:108160441-108160816+;Distance=692;DiscordantMatePairAlignments=40;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_015011:+;RightGenes=NM_015011:+;XRef=;Frequency=0.53
chr13	CG	SV	108159749	108160205	40	+	.	ID=2476;Type=deletion;Left=chr13:108159749-108160205;Right=chr13:108160441-108160816
chr13	CG	SV	108160441	108160816	40	+	.	ID=2476;Type=deletion;Left=chr13:108159749-108160205;Right=chr13:108160441-108160816
chr13	CG	SV	110502466	110503314	61	.	.	ID=2473;Type=deletion;Left=chr13:110502466-110502964+;Right=chr13:110502976-110503314+;Distance=510;DiscordantMatePairAlignments=61;LeftRepeat=Self chain;Tandem period 134;Tandem period 27;RightRepeat=MER39:LTR:ERV1;Self chain;Tandem period 134;Tandem period 27;LeftGenes=;RightGenes=;XRef=rs71085666 (chr13:110502520-110502896);Frequency=0.94
chr13	CG	SV	110502466	110502964	61	+	.	ID=2473;Type=deletion;Left=chr13:110502466-110502964;Right=chr13:110502976-110503314
chr13	CG	SV	110502976	110503314	61	+	.	ID=2473;Type=deletion;Left=chr13:110502466-110502964;Right=chr13:110502976-110503314
chr13	CG	SV	112469276	112470025	13	.	.	ID=2471;Type=deletion;Left=chr13:112469276-112469796+;Right=chr13:112469872-112470025+;Distance=596;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 159;Tandem period 40;Tandem period 79;RightRepeat=Self chain;LeftGenes=NM_015205:+;NM_032189:+;RightGenes=NM_015205:+;NM_032189:+;XRef=;Frequency=0.12
chr13	CG	SV	112469276	112469796	13	+	.	ID=2471;Type=deletion;Left=chr13:112469276-112469796;Right=chr13:112469872-112470025
chr13	CG	SV	112469872	112470025	13	+	.	ID=2471;Type=deletion;Left=chr13:112469276-112469796;Right=chr13:112469872-112470025
chr13	CG	SV	114008694	114010487	203	.	.	ID=2470;Type=deletion;Left=chr13:114008694-114009242+;Right=chr13:114009982-114010487+;Distance=1288;DiscordantMatePairAlignments=203;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr13	CG	SV	114008694	114009242	203	+	.	ID=2470;Type=deletion;Left=chr13:114008694-114009242;Right=chr13:114009982-114010487
chr13	CG	SV	114009982	114010487	203	+	.	ID=2470;Type=deletion;Left=chr13:114008694-114009242;Right=chr13:114009982-114010487
chr14	CG	SV	21100034	21101899	35	.	.	ID=2468;Type=deletion;Left=chr14:21100034-21100565+;Right=chr14:21101680-21101899+;Distance=1646;DiscordantMatePairAlignments=35;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr14	CG	SV	21100034	21100565	35	+	.	ID=2468;Type=deletion;Left=chr14:21100034-21100565;Right=chr14:21101680-21101899
chr14	CG	SV	21101680	21101899	35	+	.	ID=2468;Type=deletion;Left=chr14:21100034-21100565;Right=chr14:21101680-21101899
chr14	CG	SV	21951507	21952629	272	.	.	ID=2466;Type=deletion;Left=chr14:21951507-21951974+;Right=chr14:21952100-21952629+;Distance=593;DiscordantMatePairAlignments=272;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66716556 (chr14:21951506-21952099);Frequency=0.94
chr14	CG	SV	21951507	21951974	272	+	.	ID=2466;Type=deletion;Left=chr14:21951507-21951974;Right=chr14:21952100-21952629
chr14	CG	SV	21952100	21952629	272	+	.	ID=2466;Type=deletion;Left=chr14:21951507-21951974;Right=chr14:21952100-21952629
chr14	CG	SV	22122064	22123864	98	.	.	ID=2465;Type=deletion;Left=chr14:22122064-22122370+;Right=chr14:22123393-22123864+;Distance=1329;DiscordantMatePairAlignments=98;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_001344:-;RightGenes=NM_001344:-;XRef=;Frequency=0.00
chr14	CG	SV	22122064	22122370	98	+	.	ID=2465;Type=deletion;Left=chr14:22122064-22122370;Right=chr14:22123393-22123864
chr14	CG	SV	22123393	22123864	98	+	.	ID=2465;Type=deletion;Left=chr14:22122064-22122370;Right=chr14:22123393-22123864
chr14	CG	SV	22662700	27442360	13	.	.	ID=546;Type=tandem-duplication;Left=chr14:22662700-22663155-;Right=chr14:27442212-27442360-;Distance=4779205;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr14	CG	SV	22662700	22663155	13	-	.	ID=546;Type=tandem-duplication;Left=chr14:22662700-22663155;Right=chr14:27442212-27442360
chr14	CG	SV	27442212	27442360	13	-	.	ID=546;Type=tandem-duplication;Left=chr14:22662700-22663155;Right=chr14:27442212-27442360
chr14	CG	SV	25353716	25354835	14	.	.	ID=2461;Type=deletion;Left=chr14:25353716-25354187+;Right=chr14:25354642-25354835+;Distance=926;DiscordantMatePairAlignments=14;LeftRepeat=L1PA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr14	CG	SV	25353716	25354187	14	+	.	ID=2461;Type=deletion;Left=chr14:25353716-25354187;Right=chr14:25354642-25354835
chr14	CG	SV	25354642	25354835	14	+	.	ID=2461;Type=deletion;Left=chr14:25353716-25354187;Right=chr14:25354642-25354835
chr14	CG	SV	25660799	25662670	44	.	.	ID=2460;Type=deletion;Left=chr14:25660799-25661243+;Right=chr14:25662232-25662670+;Distance=1433;DiscordantMatePairAlignments=44;LeftRepeat=L3:LINE:CR1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr14	CG	SV	25660799	25661243	44	+	.	ID=2460;Type=deletion;Left=chr14:25660799-25661243;Right=chr14:25662232-25662670
chr14	CG	SV	25662232	25662670	44	+	.	ID=2460;Type=deletion;Left=chr14:25660799-25661243;Right=chr14:25662232-25662670
chr14	CG	SV	28797791	28799010	111	.	.	ID=2459;Type=deletion;Left=chr14:28797791-28798222+;Right=chr14:28798555-28799010+;Distance=764;DiscordantMatePairAlignments=111;LeftRepeat=L1MC3:LINE:L1;RightRepeat=L1HS:LINE:L1;L1MC3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr14	CG	SV	28797791	28798222	111	+	.	ID=2459;Type=deletion;Left=chr14:28797791-28798222;Right=chr14:28798555-28799010
chr14	CG	SV	28798555	28799010	111	+	.	ID=2459;Type=deletion;Left=chr14:28797791-28798222;Right=chr14:28798555-28799010
chr14	CG	SV	33583777	33584962	16	.	.	ID=2456;Type=deletion;Left=chr14:33583777-33584151+;Right=chr14:33584587-33584962+;Distance=810;DiscordantMatePairAlignments=16;LeftRepeat=HAL1:LINE:L1;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72415809 (chr14:33583777-33584585);Frequency=0.35
chr14	CG	SV	33583777	33584151	16	+	.	ID=2456;Type=deletion;Left=chr14:33583777-33584151;Right=chr14:33584587-33584962
chr14	CG	SV	33584587	33584962	16	+	.	ID=2456;Type=deletion;Left=chr14:33583777-33584151;Right=chr14:33584587-33584962
chr14	CG	SV	33685685	33687462	66	.	.	ID=2455;Type=deletion;Left=chr14:33685685-33686168+;Right=chr14:33687010-33687462+;Distance=1325;DiscordantMatePairAlignments=66;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr14	CG	SV	33685685	33686168	66	+	.	ID=2455;Type=deletion;Left=chr14:33685685-33686168;Right=chr14:33687010-33687462
chr14	CG	SV	33687010	33687462	66	+	.	ID=2455;Type=deletion;Left=chr14:33685685-33686168;Right=chr14:33687010-33687462
chr14	CG	SV	39679566	39687910	45	.	.	ID=2451;Type=deletion;Left=chr14:39679566-39679996+;Right=chr14:39687423-39687910+;Distance=7857;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr14	CG	SV	39679566	39679996	45	+	.	ID=2451;Type=deletion;Left=chr14:39679566-39679996;Right=chr14:39687423-39687910
chr14	CG	SV	39687423	39687910	45	+	.	ID=2451;Type=deletion;Left=chr14:39679566-39679996;Right=chr14:39687423-39687910
chr14	CG	SV	42442661	42443417	16	.	.	ID=2449;Type=deletion;Left=chr14:42442661-42443094+;Right=chr14:42443073-42443417+;Distance=412;DiscordantMatePairAlignments=16;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=L1MCa:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr14	CG	SV	42442661	42443094	16	+	.	ID=2449;Type=deletion;Left=chr14:42442661-42443094;Right=chr14:42443073-42443417
chr14	CG	SV	42443073	42443417	16	+	.	ID=2449;Type=deletion;Left=chr14:42442661-42443094;Right=chr14:42443073-42443417
chr14	CG	SV	47393233	47395232	43	.	.	ID=509;Type=probable-inversion;Left=chr14:47393233-47393717-;Right=chr14:47395012-47395232+;Distance=1295;DiscordantMatePairAlignments=43;LeftRepeat=LTR33:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr14	CG	SV	47393233	47393717	43	-	.	ID=509;Type=probable-inversion;Left=chr14:47393233-47393717;Right=chr14:47395012-47395232
chr14	CG	SV	47395012	47395232	43	-	.	ID=509;Type=probable-inversion;Left=chr14:47393233-47393717;Right=chr14:47395012-47395232
chr14	CG	SV	51448094	51449115	82	.	.	ID=2446;Type=deletion;Left=chr14:51448094-51448593+;Right=chr14:51448653-51449115+;Distance=559;DiscordantMatePairAlignments=82;LeftRepeat=AluJo:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_053064:+;RightGenes=NM_053064:+;XRef=rs72381763 (chr14:51448094-51448653);Frequency=0.12
chr14	CG	SV	51448094	51448593	82	+	.	ID=2446;Type=deletion;Left=chr14:51448094-51448593;Right=chr14:51448653-51449115
chr14	CG	SV	51448653	51449115	82	+	.	ID=2446;Type=deletion;Left=chr14:51448094-51448593;Right=chr14:51448653-51449115
chr14	CG	SV	53780099	53783936	74	.	.	ID=2444;Type=deletion;Left=chr14:53780099-53780645+;Right=chr14:53783438-53783936+;Distance=3339;DiscordantMatePairAlignments=74;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72416677 (chr14:53780099-53783437);Frequency=0.47
chr14	CG	SV	53780099	53780645	74	+	.	ID=2444;Type=deletion;Left=chr14:53780099-53780645;Right=chr14:53783438-53783936
chr14	CG	SV	53783438	53783936	74	+	.	ID=2444;Type=deletion;Left=chr14:53780099-53780645;Right=chr14:53783438-53783936
chr14	CG	SV	63243922	63629872	54	.	.	ID=4162;Type=probable-inversion;Left=chr14:63243922-63244132+;Right=chr14:63629304-63629872-;Distance=385950;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=;LeftGenes=NM_030791:-;RightGenes=NM_015180:+;NM_182914:+;XRef=;Frequency=0.00
chr14	CG	SV	63243922	63244132	54	+	.	ID=4162;Type=probable-inversion;Left=chr14:63243922-63244132;Right=chr14:63629304-63629872
chr14	CG	SV	63629304	63629872	54	+	.	ID=4162;Type=probable-inversion;Left=chr14:63243922-63244132;Right=chr14:63629304-63629872
chr14	CG	SV	64358649	64359306	16	.	.	ID=507;Type=probable-inversion;Left=chr14:64358649-64358740-;Right=chr14:64358845-64359306+;Distance=105;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=(TC)n:Simple_repeat:Simple_repeat;Tandem CA;LeftGenes=NM_000347:-;NM_001024858:-;RightGenes=NM_000347:-;NM_001024858:-;XRef=;Frequency=1.00
chr14	CG	SV	64358649	64358740	16	-	.	ID=507;Type=probable-inversion;Left=chr14:64358649-64358740;Right=chr14:64358845-64359306
chr14	CG	SV	64358845	64359306	16	-	.	ID=507;Type=probable-inversion;Left=chr14:64358649-64358740;Right=chr14:64358845-64359306
chr14	CG	SV	64430149	64433776	127	.	.	ID=2440;Type=deletion;Left=chr14:64430149-64430631+;Right=chr14:64433303-64433776+;Distance=3154;DiscordantMatePairAlignments=127;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71948642 (chr14:64430149-64433302);Frequency=1.00
chr14	CG	SV	64430149	64430631	127	+	.	ID=2440;Type=deletion;Left=chr14:64430149-64430631;Right=chr14:64433303-64433776
chr14	CG	SV	64433303	64433776	127	+	.	ID=2440;Type=deletion;Left=chr14:64430149-64430631;Right=chr14:64433303-64433776
chr14	CG	SV	67672995	67673946	56	.	.	ID=2439;Type=deletion;Left=chr14:67672995-67673446+;Right=chr14:67673693-67673946+;Distance=698;DiscordantMatePairAlignments=56;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_002877:+;NM_133509:+;NM_133510:+;RightGenes=NM_002877:+;NM_133509:+;NM_133510:+;XRef=rs67596241 (chr14:67672784-67673484);Frequency=0.94
chr14	CG	SV	67672995	67673446	56	+	.	ID=2439;Type=deletion;Left=chr14:67672995-67673446;Right=chr14:67673693-67673946
chr14	CG	SV	67673693	67673946	56	+	.	ID=2439;Type=deletion;Left=chr14:67672995-67673446;Right=chr14:67673693-67673946
chr14	CG	SV	75883527	75884448	38	.	.	ID=2437;Type=deletion;Left=chr14:75883527-75884037+;Right=chr14:75883962-75884448+;Distance=435;DiscordantMatePairAlignments=38;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66763096 (chr14:75883526-75883961);Frequency=0.59
chr14	CG	SV	75883527	75884037	38	+	.	ID=2437;Type=deletion;Left=chr14:75883527-75884037;Right=chr14:75883962-75884448
chr14	CG	SV	75883962	75884448	38	+	.	ID=2437;Type=deletion;Left=chr14:75883527-75884037;Right=chr14:75883962-75884448
chr14	CG	SV	79176043	79185247	65	.	.	ID=2436;Type=deletion;Left=chr14:79176043-79176468+;Right=chr14:79184804-79185247+;Distance=8761;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=;LeftGenes=NM_001105250:+;NM_004796:+;NM_138970:+;RightGenes=NM_001105250:+;NM_004796:+;NM_138970:+;XRef=rs6145406 (chr14:79176041-79184802);Frequency=0.53
chr14	CG	SV	79176043	79176468	65	+	.	ID=2436;Type=deletion;Left=chr14:79176043-79176468;Right=chr14:79184804-79185247
chr14	CG	SV	79184804	79185247	65	+	.	ID=2436;Type=deletion;Left=chr14:79176043-79176468;Right=chr14:79184804-79185247
chr14	CG	SV	82705606	82706520	61	.	.	ID=2433;Type=deletion;Left=chr14:82705606-82706138+;Right=chr14:82706253-82706520+;Distance=647;DiscordantMatePairAlignments=61;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71765712 (chr14:82705589-82706236);Frequency=0.94
chr14	CG	SV	82705606	82706138	61	+	.	ID=2433;Type=deletion;Left=chr14:82705606-82706138;Right=chr14:82706253-82706520
chr14	CG	SV	82706253	82706520	61	+	.	ID=2433;Type=deletion;Left=chr14:82705606-82706138;Right=chr14:82706253-82706520
chr14	CG	SV	92995761	92996144	21	.	.	ID=4160;Type=probable-inversion;Left=chr14:92995761-92995981+;Right=chr14:92996056-92996144-;Distance=383;DiscordantMatePairAlignments=21;LeftRepeat=MIRb:SINE:MIR;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_020818:+;RightGenes=NM_020818:+;XRef=;Frequency=1.00
chr14	CG	SV	92995761	92995981	21	+	.	ID=4160;Type=probable-inversion;Left=chr14:92995761-92995981;Right=chr14:92996056-92996144
chr14	CG	SV	92996056	92996144	21	+	.	ID=4160;Type=probable-inversion;Left=chr14:92995761-92995981;Right=chr14:92996056-92996144
chr14	CG	SV	96245187	96245803	10	.	.	ID=2429;Type=deletion;Left=chr14:96245187-96245727+;Right=chr14:96245559-96245803+;Distance=372;DiscordantMatePairAlignments=10;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Tandem period 33;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;LeftGenes=;RightGenes=;XRef=rs72339509 (chr14:96244957-96245272);Frequency=0.76
chr14	CG	SV	96245187	96245727	10	+	.	ID=2429;Type=deletion;Left=chr14:96245187-96245727;Right=chr14:96245559-96245803
chr14	CG	SV	96245559	96245803	10	+	.	ID=2429;Type=deletion;Left=chr14:96245187-96245727;Right=chr14:96245559-96245803
chr14	CG	SV	98573896	98575414	12	.	.	ID=2428;Type=deletion;Left=chr14:98573896-98574295+;Right=chr14:98575205-98575414+;Distance=1309;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=MLT1J2:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr14	CG	SV	98573896	98574295	12	+	.	ID=2428;Type=deletion;Left=chr14:98573896-98574295;Right=chr14:98575205-98575414
chr14	CG	SV	98575205	98575414	12	+	.	ID=2428;Type=deletion;Left=chr14:98573896-98574295;Right=chr14:98575205-98575414
chr14	CG	SV	100062731	100063040	33	.	.	ID=538;Type=tandem-duplication;Left=chr14:100062731-100062880-;Right=chr14:100062877-100063040-;Distance=160;DiscordantMatePairAlignments=33;LeftRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;RightRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;LeftGenes=NM_001161476:+;NM_024515:+;RightGenes=NM_001161476:+;NM_024515:+;XRef=;Frequency=1.00
chr14	CG	SV	100062731	100062880	33	-	.	ID=538;Type=tandem-duplication;Left=chr14:100062731-100062880;Right=chr14:100062877-100063040
chr14	CG	SV	100062877	100063040	33	-	.	ID=538;Type=tandem-duplication;Left=chr14:100062731-100062880;Right=chr14:100062877-100063040
chr14	CG	SV	101060629	101061571	15	.	.	ID=2426;Type=deletion;Left=chr14:101060629-101061048+;Right=chr14:101060965-101061571+;Distance=336;DiscordantMatePairAlignments=15;LeftRepeat=MADE1:DNA:Mariner;RightRepeat=MADE1:DNA:Mariner;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr14	CG	SV	101060629	101061048	15	+	.	ID=2426;Type=deletion;Left=chr14:101060629-101061048;Right=chr14:101060965-101061571
chr14	CG	SV	101060965	101061571	15	+	.	ID=2426;Type=deletion;Left=chr14:101060629-101061048;Right=chr14:101060965-101061571
chr14	CG	SV	103432413	103432879	100	.	.	ID=537;Type=tandem-duplication;Left=chr14:103432413-103432642-;Right=chr14:103432681-103432879-;Distance=237;DiscordantMatePairAlignments=100;LeftRepeat=Self chain;Tandem period 33;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	103432413	103432642	100	-	.	ID=537;Type=tandem-duplication;Left=chr14:103432413-103432642;Right=chr14:103432681-103432879
chr14	CG	SV	103432681	103432879	100	-	.	ID=537;Type=tandem-duplication;Left=chr14:103432413-103432642;Right=chr14:103432681-103432879
chr14	CG	SV	104345053	104346295	124	.	.	ID=2425;Type=deletion;Left=chr14:104345053-104345448+;Right=chr14:104345851-104346295+;Distance=798;DiscordantMatePairAlignments=124;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71803557 (chr14:104344945-104345705);Frequency=0.94
chr14	CG	SV	104345053	104345448	124	+	.	ID=2425;Type=deletion;Left=chr14:104345053-104345448;Right=chr14:104345851-104346295
chr14	CG	SV	104345851	104346295	124	+	.	ID=2425;Type=deletion;Left=chr14:104345053-104345448;Right=chr14:104345851-104346295
chr14	CG	SV	104699610	104700234	75	.	.	ID=520;Type=tandem-duplication;Left=chr14:104699610-104699835-;Right=chr14:104699863-104700234-;Distance=399;DiscordantMatePairAlignments=75;LeftRepeat=Self chain;Tandem period 33;RightRepeat=Self chain;LeftGenes=NM_002226:-;NM_145159:-;RightGenes=NM_002226:-;NM_145159:-;XRef=;Frequency=0.65
chr14	CG	SV	104699610	104699835	75	-	.	ID=520;Type=tandem-duplication;Left=chr14:104699610-104699835;Right=chr14:104699863-104700234
chr14	CG	SV	104699863	104700234	75	-	.	ID=520;Type=tandem-duplication;Left=chr14:104699610-104699835;Right=chr14:104699863-104700234
chr14	CG	SV	104809327	104810143	31	.	.	ID=2423;Type=deletion;Left=chr14:104809327-104809806+;Right=chr14:104809687-104810143+;Distance=360;DiscordantMatePairAlignments=31;LeftRepeat=Self chain;Tandem period 72;RightRepeat=Self chain;LeftGenes=NM_001519:-;RightGenes=NM_001519:-;XRef=;Frequency=0.59
chr14	CG	SV	104809327	104809806	31	+	.	ID=2423;Type=deletion;Left=chr14:104809327-104809806;Right=chr14:104809687-104810143
chr14	CG	SV	104809687	104810143	31	+	.	ID=2423;Type=deletion;Left=chr14:104809327-104809806;Right=chr14:104809687-104810143
chr14	CG	SV	105120043	105120347	15	.	.	ID=518;Type=tandem-duplication;Left=chr14:105120043-105120127-;Right=chr14:105120144-105120347-;Distance=220;DiscordantMatePairAlignments=15;LeftRepeat=SegDup;Self chain;Tandem period 20;RightRepeat=SegDup;Self chain;Tandem period 20;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	105120043	105120127	15	-	.	ID=518;Type=tandem-duplication;Left=chr14:105120043-105120127;Right=chr14:105120144-105120347
chr14	CG	SV	105120144	105120347	15	-	.	ID=518;Type=tandem-duplication;Left=chr14:105120043-105120127;Right=chr14:105120144-105120347
chr14	CG	SV	106003685	106246383	18	.	.	ID=2420;Type=deletion;Left=chr14:106003685-106003875+;Right=chr14:106245975-106246383+;Distance=242290;DiscordantMatePairAlignments=18;LeftRepeat=MER89-int:LTR:ERV1;SegDup;Self chain;RightRepeat=LTR52-int:LTR:ERVL;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr14	CG	SV	106003685	106003875	18	+	.	ID=2420;Type=deletion;Left=chr14:106003685-106003875;Right=chr14:106245975-106246383
chr14	CG	SV	106245975	106246383	18	+	.	ID=2420;Type=deletion;Left=chr14:106003685-106003875;Right=chr14:106245975-106246383
chr14	CG	SV	106232619	106232836	78	.	.	ID=512;Type=tandem-duplication;Left=chr14:106232619-106232718-;Right=chr14:106232682-106232836-;Distance=118;DiscordantMatePairAlignments=78;LeftRepeat=Self chain;Tandem period 59;RightRepeat=Self chain;Tandem period 59;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	106232619	106232718	78	-	.	ID=512;Type=tandem-duplication;Left=chr14:106232619-106232718;Right=chr14:106232682-106232836
chr14	CG	SV	106232682	106232836	78	-	.	ID=512;Type=tandem-duplication;Left=chr14:106232619-106232718;Right=chr14:106232682-106232836
chr15	CG	SV	22390426	22391254	11	.	.	ID=2418;Type=deletion;Left=chr15:22390426-22390794+;Right=chr15:22390748-22391254+;Distance=322;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=MSTC-int:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=rs71114009 (chr15:22390410-22390732);Frequency=0.47
chr15	CG	SV	22390426	22390794	11	+	.	ID=2418;Type=deletion;Left=chr15:22390426-22390794;Right=chr15:22390748-22391254
chr15	CG	SV	22390748	22391254	11	+	.	ID=2418;Type=deletion;Left=chr15:22390426-22390794;Right=chr15:22390748-22391254
chr15	CG	SV	27198774	27199706	67	.	.	ID=2415;Type=deletion;Left=chr15:27198774-27199310+;Right=chr15:27199196-27199706+;Distance=422;DiscordantMatePairAlignments=67;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=L1MEc:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs67495753 (chr15:27198766-27199188);Frequency=1.00
chr15	CG	SV	27198774	27199310	67	+	.	ID=2415;Type=deletion;Left=chr15:27198774-27199310;Right=chr15:27199196-27199706
chr15	CG	SV	27199196	27199706	67	+	.	ID=2415;Type=deletion;Left=chr15:27198774-27199310;Right=chr15:27199196-27199706
chr15	CG	SV	32796325	32797157	14	.	.	ID=2414;Type=deletion;Left=chr15:32796325-32796847+;Right=chr15:32796660-32797157+;Distance=335;DiscordantMatePairAlignments=14;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67980090 (chr15:32796308-32796643);Frequency=1.00
chr15	CG	SV	32796325	32796847	14	+	.	ID=2414;Type=deletion;Left=chr15:32796325-32796847;Right=chr15:32796660-32797157
chr15	CG	SV	32796660	32797157	14	+	.	ID=2414;Type=deletion;Left=chr15:32796325-32796847;Right=chr15:32796660-32797157
chr15	CG	SV	38609284	38611313	49	.	.	ID=2411;Type=deletion;Left=chr15:38609284-38609760+;Right=chr15:38610945-38611313+;Distance=1661;DiscordantMatePairAlignments=49;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr15	CG	SV	38609284	38609760	49	+	.	ID=2411;Type=deletion;Left=chr15:38609284-38609760;Right=chr15:38610945-38611313
chr15	CG	SV	38610945	38611313	49	+	.	ID=2411;Type=deletion;Left=chr15:38609284-38609760;Right=chr15:38610945-38611313
chr15	CG	SV	43855272	43856192	24	.	.	ID=2398;Type=deletion;Left=chr15:43855272-43855835+;Right=chr15:43855622-43856192+;Distance=350;DiscordantMatePairAlignments=24;LeftRepeat=L1MEa:LINE:L1;Tandem T;RightRepeat=L1MEa:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67712655 (chr15:43855272-43855622);Frequency=1.00
chr15	CG	SV	43855272	43855835	24	+	.	ID=2398;Type=deletion;Left=chr15:43855272-43855835;Right=chr15:43855622-43856192
chr15	CG	SV	43855622	43856192	24	+	.	ID=2398;Type=deletion;Left=chr15:43855272-43855835;Right=chr15:43855622-43856192
chr15	CG	SV	53005513	53012230	26	.	.	ID=2395;Type=deletion;Left=chr15:53005513-53005858+;Right=chr15:53011722-53012230+;Distance=6209;DiscordantMatePairAlignments=26;LeftRepeat=L1M1:LINE:L1;RightRepeat=L1ME3:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71114035 (chr15:53005522-53011731);Frequency=1.00
chr15	CG	SV	53005513	53005858	26	+	.	ID=2395;Type=deletion;Left=chr15:53005513-53005858;Right=chr15:53011722-53012230
chr15	CG	SV	53011722	53012230	26	+	.	ID=2395;Type=deletion;Left=chr15:53005513-53005858;Right=chr15:53011722-53012230
chr15	CG	SV	57500190	57501060	19	.	.	ID=2394;Type=deletion;Left=chr15:57500190-57500593+;Right=chr15:57500521-57501060+;Distance=331;DiscordantMatePairAlignments=19;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67321160 (chr15:57500178-57500509);Frequency=1.00
chr15	CG	SV	57500190	57500593	19	+	.	ID=2394;Type=deletion;Left=chr15:57500190-57500593;Right=chr15:57500521-57501060
chr15	CG	SV	57500521	57501060	19	+	.	ID=2394;Type=deletion;Left=chr15:57500190-57500593;Right=chr15:57500521-57501060
chr15	CG	SV	69495663	69501077	18	.	.	ID=2388;Type=deletion;Left=chr15:69495663-69496160+;Right=chr15:69500744-69501077+;Distance=5081;DiscordantMatePairAlignments=18;LeftRepeat=L1MA2:LINE:L1;Self chain;RightRepeat=L1M1:LINE:L1;Self chain;LeftGenes=NM_024817:+;RightGenes=NM_024817:+;XRef=;Frequency=0.47
chr15	CG	SV	69495663	69496160	18	+	.	ID=2388;Type=deletion;Left=chr15:69495663-69496160;Right=chr15:69500744-69501077
chr15	CG	SV	69500744	69501077	18	+	.	ID=2388;Type=deletion;Left=chr15:69495663-69496160;Right=chr15:69500744-69501077
chr15	CG	SV	69672535	69673363	12	.	.	ID=2387;Type=deletion;Left=chr15:69672535-69673011+;Right=chr15:69672873-69673363+;Distance=338;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_024817:+;RightGenes=NM_024817:+;XRef=rs68136845 (chr15:69672535-69672873);Frequency=1.00
chr15	CG	SV	69672535	69673011	12	+	.	ID=2387;Type=deletion;Left=chr15:69672535-69673011;Right=chr15:69672873-69673363
chr15	CG	SV	69672873	69673363	12	+	.	ID=2387;Type=deletion;Left=chr15:69672535-69673011;Right=chr15:69672873-69673363
chr15	CG	SV	69804361	69805072	20	.	.	ID=2386;Type=deletion;Left=chr15:69804361-69804775+;Right=chr15:69804721-69805072+;Distance=360;DiscordantMatePairAlignments=20;LeftRepeat=L2:LINE:L2;Self chain;Tandem period 180;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_024817:+;RightGenes=NM_024817:+;XRef=rs71114044 (chr15:69804361-69804721);Frequency=1.00
chr15	CG	SV	69804361	69804775	20	+	.	ID=2386;Type=deletion;Left=chr15:69804361-69804775;Right=chr15:69804721-69805072
chr15	CG	SV	69804721	69805072	20	+	.	ID=2386;Type=deletion;Left=chr15:69804361-69804775;Right=chr15:69804721-69805072
chr15	CG	SV	70139307	70294611	11	.	.	ID=501;Type=tandem-duplication;Left=chr15:70139307-70139794-;Right=chr15:70294203-70294611-;Distance=154817;DiscordantMatePairAlignments=11;LeftRepeat=(TAAAAA)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 7;RightRepeat=Self chain;LeftGenes=NM_006901:-;RightGenes=NM_002654:-;NM_182470:-;NM_182471:-;XRef=;Frequency=0.00
chr15	CG	SV	70139307	70139794	11	-	.	ID=501;Type=tandem-duplication;Left=chr15:70139307-70139794;Right=chr15:70294203-70294611
chr15	CG	SV	70294203	70294611	11	-	.	ID=501;Type=tandem-duplication;Left=chr15:70139307-70139794;Right=chr15:70294203-70294611
chr15	CG	SV	75697927	75698683	21	.	.	ID=2380;Type=complex;Left=chr15:75697927-75698417+;Right=chr15:75698301-75698683+;Distance=374;DiscordantMatePairAlignments=21;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_032808:-;RightGenes=NM_032808:-;XRef=rs35529068 (chr15:75697916-75698290);Frequency=1.00
chr15	CG	SV	75697927	75698417	21	+	.	ID=2380;Type=complex;Left=chr15:75697927-75698417;Right=chr15:75698301-75698683
chr15	CG	SV	75698301	75698683	21	+	.	ID=2380;Type=complex;Left=chr15:75697927-75698417;Right=chr15:75698301-75698683
chr15	CG	SV	75697927	75698819	17	.	.	ID=2381;Type=complex;Left=chr15:75697927-75698291+;Right=chr15:75698301-75698819+;Distance=374;DiscordantMatePairAlignments=17;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_032808:-;RightGenes=NM_032808:-;XRef=rs66895003 (chr15:75697927-75698301);Frequency=1.00
chr15	CG	SV	75697927	75698291	17	+	.	ID=2381;Type=complex;Left=chr15:75697927-75698291;Right=chr15:75698301-75698819
chr15	CG	SV	75698301	75698819	17	+	.	ID=2381;Type=complex;Left=chr15:75697927-75698291;Right=chr15:75698301-75698819
chr15	CG	SV	77592041	77592577	14	.	.	ID=2379;Type=deletion;Left=chr15:77592041-77592585+;Right=chr15:77592400-77592577+;Distance=359;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 359;RightRepeat=Self chain;Tandem period 359;LeftGenes=;RightGenes=;XRef=rs6145645 (chr15:77591688-77592047);Frequency=0.76
chr15	CG	SV	77592041	77592585	14	+	.	ID=2379;Type=deletion;Left=chr15:77592041-77592585;Right=chr15:77592400-77592577
chr15	CG	SV	77592400	77592577	14	+	.	ID=2379;Type=deletion;Left=chr15:77592041-77592585;Right=chr15:77592400-77592577
chr15	CG	SV	77678911	77679794	15	.	.	ID=2378;Type=deletion;Left=chr15:77678911-77679443+;Right=chr15:77679236-77679794+;Distance=325;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71796945 (chr15:77678911-77679232);Frequency=0.59
chr15	CG	SV	77678911	77679443	15	+	.	ID=2378;Type=deletion;Left=chr15:77678911-77679443;Right=chr15:77679236-77679794
chr15	CG	SV	77679236	77679794	15	+	.	ID=2378;Type=deletion;Left=chr15:77678911-77679443;Right=chr15:77679236-77679794
chr15	CG	SV	85501135	85501823	36	.	.	ID=2376;Type=deletion;Left=chr15:85501135-85501703+;Right=chr15:85501575-85501823+;Distance=440;DiscordantMatePairAlignments=36;LeftRepeat=(TTCC)n:Simple_repeat:Simple_repeat;Tandem TTCC;Tandem period 28;Tandem period 43;Tandem period 71;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem period 28;Tandem period 43;Tandem period 71;LeftGenes=;RightGenes=;XRef=rs67982659 (chr15:85501027-85501436);Frequency=0.71
chr15	CG	SV	85501135	85501703	36	+	.	ID=2376;Type=deletion;Left=chr15:85501135-85501703;Right=chr15:85501575-85501823
chr15	CG	SV	85501575	85501823	36	+	.	ID=2376;Type=deletion;Left=chr15:85501135-85501703;Right=chr15:85501575-85501823
chr15	CG	SV	91316802	91317635	12	.	.	ID=2373;Type=deletion;Left=chr15:91316802-91317288+;Right=chr15:91317115-91317635+;Distance=313;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001271:+;RightGenes=NM_001271:+;XRef=rs72169613 (chr15:91316791-91317104);Frequency=0.94
chr15	CG	SV	91316802	91317288	12	+	.	ID=2373;Type=deletion;Left=chr15:91316802-91317288;Right=chr15:91317115-91317635
chr15	CG	SV	91317115	91317635	12	+	.	ID=2373;Type=deletion;Left=chr15:91316802-91317288;Right=chr15:91317115-91317635
chr15	CG	SV	96523627	96524554	11	.	.	ID=2372;Type=deletion;Left=chr15:96523627-96524061+;Right=chr15:96523955-96524554+;Distance=328;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=MER52A:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs71114056 (chr15:96523627-96523955);Frequency=0.82
chr15	CG	SV	96523627	96524061	11	+	.	ID=2372;Type=deletion;Left=chr15:96523627-96524061;Right=chr15:96523955-96524554
chr15	CG	SV	96523955	96524554	11	+	.	ID=2372;Type=deletion;Left=chr15:96523627-96524061;Right=chr15:96523955-96524554
chr15	CG	SV	96717592	96718581	22	.	.	ID=2371;Type=deletion;Left=chr15:96717592-96717830+;Right=chr15:96718158-96718581+;Distance=566;DiscordantMatePairAlignments=22;LeftRepeat=L1MC:LINE:L1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67424211 (chr15:96717594-96718160);Frequency=0.71
chr15	CG	SV	96717592	96717830	22	+	.	ID=2371;Type=deletion;Left=chr15:96717592-96717830;Right=chr15:96718158-96718581
chr15	CG	SV	96718158	96718581	22	+	.	ID=2371;Type=deletion;Left=chr15:96717592-96717830;Right=chr15:96718158-96718581
chr15	CG	SV	98869416	98870161	28	.	.	ID=2370;Type=deletion;Left=chr15:98869416-98869815+;Right=chr15:98869855-98870161+;Distance=439;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;Tandem period 63;RightRepeat=Self chain;LeftGenes=NM_178842:-;RightGenes=NM_178842:-;XRef=rs72451132 (chr15:98869262-98869701);Frequency=1.00
chr15	CG	SV	98869416	98869815	28	+	.	ID=2370;Type=deletion;Left=chr15:98869416-98869815;Right=chr15:98869855-98870161
chr15	CG	SV	98869855	98870161	28	+	.	ID=2370;Type=deletion;Left=chr15:98869416-98869815;Right=chr15:98869855-98870161
chr15	CG	SV	99068019	99068267	10	.	.	ID=492;Type=tandem-duplication;Left=chr15:99068019-99068141-;Right=chr15:99068121-99068267-;Distance=126;DiscordantMatePairAlignments=10;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGGAGG;Tandem period 30;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr15	CG	SV	99068019	99068141	10	-	.	ID=492;Type=tandem-duplication;Left=chr15:99068019-99068141;Right=chr15:99068121-99068267
chr15	CG	SV	99068121	99068267	10	-	.	ID=492;Type=tandem-duplication;Left=chr15:99068019-99068141;Right=chr15:99068121-99068267
chr15	CG	SV	99844125	100131539	47	.	.	ID=491;Type=tandem-duplication;Left=chr15:99844125-99844519-;Right=chr15:100131000-100131539-;Distance=287020;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=NM_002570:-;NM_138319:-;NM_138320:-;NM_138321:-;NM_138322:-;NM_138323:-;NM_138324:-;NM_138325:-;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	99844125	99844519	47	-	.	ID=491;Type=tandem-duplication;Left=chr15:99844125-99844519;Right=chr15:100131000-100131539
chr15	CG	SV	100131000	100131539	47	-	.	ID=491;Type=tandem-duplication;Left=chr15:99844125-99844519;Right=chr15:100131000-100131539
chr15	CG	SV	99968989	99983555	53	.	.	ID=4157;Type=probable-inversion;Left=chr15:99968989-99969424+;Right=chr15:99983134-99983555-;Distance=14566;DiscordantMatePairAlignments=53;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	99968989	99969424	53	+	.	ID=4157;Type=probable-inversion;Left=chr15:99968989-99969424;Right=chr15:99983134-99983555
chr15	CG	SV	99983134	99983555	53	+	.	ID=4157;Type=probable-inversion;Left=chr15:99968989-99969424;Right=chr15:99983134-99983555
chr15	CG	SV	99981996	100040181	70	.	.	ID=488;Type=probable-inversion;Left=chr15:99981996-99982419-;Right=chr15:100039690-100040181+;Distance=57271;DiscordantMatePairAlignments=70;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=NM_152334:-;XRef=;Frequency=0.00
chr15	CG	SV	99981996	99982419	70	-	.	ID=488;Type=probable-inversion;Left=chr15:99981996-99982419;Right=chr15:100039690-100040181
chr15	CG	SV	100039690	100040181	70	-	.	ID=488;Type=probable-inversion;Left=chr15:99981996-99982419;Right=chr15:100039690-100040181
chr16	CG	SV	1185867	1274956	14	.	.	ID=489;Type=tandem-duplication;Left=chr16:1185867-1186088-;Right=chr16:1274683-1274956-;Distance=88868;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 20;LeftGenes=NM_001005407:+;NM_021098:+;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	1185867	1186088	14	-	.	ID=489;Type=tandem-duplication;Left=chr16:1185867-1186088;Right=chr16:1274683-1274956
chr16	CG	SV	1274683	1274956	14	-	.	ID=489;Type=tandem-duplication;Left=chr16:1185867-1186088;Right=chr16:1274683-1274956
chr16	CG	SV	1362943	1364574	111	.	.	ID=2367;Type=deletion;Left=chr16:1362943-1363414+;Right=chr16:1364206-1364574+;Distance=1263;DiscordantMatePairAlignments=111;LeftRepeat=Self chain;Tandem period 55;RightRepeat=Self chain;Tandem period 55;LeftGenes=NM_023076:-;RightGenes=NM_023076:-;XRef=rs72390176 (chr16:1363011-1364219);Frequency=1.00
chr16	CG	SV	1362943	1363414	111	+	.	ID=2367;Type=deletion;Left=chr16:1362943-1363414;Right=chr16:1364206-1364574
chr16	CG	SV	1364206	1364574	111	+	.	ID=2367;Type=deletion;Left=chr16:1362943-1363414;Right=chr16:1364206-1364574
chr16	CG	SV	2288024	2288566	10	.	.	ID=2366;Type=deletion;Left=chr16:2288024-2288641+;Right=chr16:2288264-2288566+;Distance=240;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 80;RightRepeat=Self chain;LeftGenes=NM_001089:-;RightGenes=NM_001089:-;XRef=;Frequency=0.76
chr16	CG	SV	2288024	2288641	10	+	.	ID=2366;Type=deletion;Left=chr16:2288024-2288641;Right=chr16:2288264-2288566
chr16	CG	SV	2288264	2288566	10	+	.	ID=2366;Type=deletion;Left=chr16:2288024-2288641;Right=chr16:2288264-2288566
chr16	CG	SV	11591259	11593187	25	.	.	ID=2363;Type=deletion;Left=chr16:11591259-11591818+;Right=chr16:11592820-11593187+;Distance=1561;DiscordantMatePairAlignments=25;LeftRepeat=AluJo:SINE:Alu;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr16	CG	SV	11591259	11591818	25	+	.	ID=2363;Type=deletion;Left=chr16:11591259-11591818;Right=chr16:11592820-11593187
chr16	CG	SV	11592820	11593187	25	+	.	ID=2363;Type=deletion;Left=chr16:11591259-11591818;Right=chr16:11592820-11593187
chr16	CG	SV	13201969	13204476	83	.	.	ID=2362;Type=deletion;Left=chr16:13201969-13202458+;Right=chr16:13203998-13204476+;Distance=2029;DiscordantMatePairAlignments=83;LeftRepeat=;RightRepeat=L1MC4a:LINE:L1;LeftGenes=NM_001145204:+;RightGenes=NM_001145204:+;XRef=;Frequency=0.59
chr16	CG	SV	13201969	13202458	83	+	.	ID=2362;Type=deletion;Left=chr16:13201969-13202458;Right=chr16:13203998-13204476
chr16	CG	SV	13203998	13204476	83	+	.	ID=2362;Type=deletion;Left=chr16:13201969-13202458;Right=chr16:13203998-13204476
chr16	CG	SV	14360737	14361502	14	.	.	ID=2361;Type=deletion;Left=chr16:14360737-14361257+;Right=chr16:14361155-14361502+;Distance=418;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=rs72460419 (chr16:14360736-14361154);Frequency=0.00
chr16	CG	SV	14360737	14361257	14	+	.	ID=2361;Type=deletion;Left=chr16:14360737-14361257;Right=chr16:14361155-14361502
chr16	CG	SV	14361155	14361502	14	+	.	ID=2361;Type=deletion;Left=chr16:14360737-14361257;Right=chr16:14361155-14361502
chr16	CG	SV	14488266	33858185	103	.	.	ID=486;Type=complex;Left=chr16:14488266-14488376-;Right=chr16:33857677-33858185+;Distance=19369301;DiscordantMatePairAlignments=103;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=NM_001134477:-;NM_002582:-;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	14488266	14488376	103	-	.	ID=486;Type=complex;Left=chr16:14488266-14488376;Right=chr16:33857677-33858185
chr16	CG	SV	33857677	33858185	103	-	.	ID=486;Type=complex;Left=chr16:14488266-14488376;Right=chr16:33857677-33858185
chr16	CG	SV	19137943	19138663	19	.	.	ID=2358;Type=deletion;Left=chr16:19137943-19138522+;Right=chr16:19138295-19138663+;Distance=352;DiscordantMatePairAlignments=19;LeftRepeat=AluYb9:SINE:Alu;Self chain;RightRepeat=L1MC4:LINE:L1;Self chain;LeftGenes=NM_016524:+;RightGenes=NM_016524:+;XRef=rs10529565 (chr16:19137943-19138295);Frequency=0.94
chr16	CG	SV	19137943	19138522	19	+	.	ID=2358;Type=deletion;Left=chr16:19137943-19138522;Right=chr16:19138295-19138663
chr16	CG	SV	19138295	19138663	19	+	.	ID=2358;Type=deletion;Left=chr16:19137943-19138522;Right=chr16:19138295-19138663
chr16	CG	SV	21501943	22618252	80	.	.	ID=4156;Type=probable-inversion;Left=chr16:21501943-21502146+;Right=chr16:22617811-22618252-;Distance=1116309;DiscordantMatePairAlignments=80;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	21501943	21502146	80	+	.	ID=4156;Type=probable-inversion;Left=chr16:21501943-21502146;Right=chr16:22617811-22618252
chr16	CG	SV	22617811	22618252	80	+	.	ID=4156;Type=probable-inversion;Left=chr16:21501943-21502146;Right=chr16:22617811-22618252
chr16	CG	SV	22955276	22957505	211	.	.	ID=2356;Type=deletion;Left=chr16:22955276-22955751+;Right=chr16:22957032-22957505+;Distance=1756;DiscordantMatePairAlignments=211;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67692612 (chr16:22955282-22957032);Frequency=0.88
chr16	CG	SV	22955276	22955751	211	+	.	ID=2356;Type=deletion;Left=chr16:22955276-22955751;Right=chr16:22957032-22957505
chr16	CG	SV	22957032	22957505	211	+	.	ID=2356;Type=deletion;Left=chr16:22955276-22955751;Right=chr16:22957032-22957505
chr16	CG	SV	25247612	25251098	27	.	.	ID=2353;Type=deletion;Left=chr16:25247612-25247825+;Right=chr16:25250630-25251098+;Distance=3018;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72108142 (chr16:25247612-25250630);Frequency=0.88
chr16	CG	SV	25247612	25247825	27	+	.	ID=2353;Type=deletion;Left=chr16:25247612-25247825;Right=chr16:25250630-25251098
chr16	CG	SV	25250630	25251098	27	+	.	ID=2353;Type=deletion;Left=chr16:25247612-25247825;Right=chr16:25250630-25251098
chr16	CG	SV	26292320	26293768	97	.	.	ID=485;Type=tandem-duplication;Left=chr16:26292320-26292872-;Right=chr16:26293311-26293768-;Distance=896;DiscordantMatePairAlignments=97;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;Tandem GATG;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	26292320	26292872	97	-	.	ID=485;Type=tandem-duplication;Left=chr16:26292320-26292872;Right=chr16:26293311-26293768
chr16	CG	SV	26293311	26293768	97	-	.	ID=485;Type=tandem-duplication;Left=chr16:26292320-26292872;Right=chr16:26293311-26293768
chr16	CG	SV	29716387	30966334	64	.	.	ID=484;Type=tandem-duplication;Left=chr16:29716387-29716800-;Right=chr16:30965766-30966334-;Distance=1249534;DiscordantMatePairAlignments=64;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	29716387	29716800	64	-	.	ID=484;Type=tandem-duplication;Left=chr16:29716387-29716800;Right=chr16:30965766-30966334
chr16	CG	SV	30965766	30966334	64	-	.	ID=484;Type=tandem-duplication;Left=chr16:29716387-29716800;Right=chr16:30965766-30966334
chr16	CG	SV	33852431	33853309	11	.	.	ID=2344;Type=deletion;Left=chr16:33852431-33852868+;Right=chr16:33852872-33853309+;Distance=441;DiscordantMatePairAlignments=11;LeftRepeat=SegDup;Self chain;RightRepeat=AluSq:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	33852431	33852868	11	+	.	ID=2344;Type=deletion;Left=chr16:33852431-33852868;Right=chr16:33852872-33853309
chr16	CG	SV	33852872	33853309	11	+	.	ID=2344;Type=deletion;Left=chr16:33852431-33852868;Right=chr16:33852872-33853309
chr16	CG	SV	33857196	33857996	25	.	.	ID=2343;Type=complex;Left=chr16:33857196-33857606+;Right=chr16:33857588-33857996+;Distance=392;DiscordantMatePairAlignments=25;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	33857196	33857606	25	+	.	ID=2343;Type=complex;Left=chr16:33857196-33857606;Right=chr16:33857588-33857996
chr16	CG	SV	33857588	33857996	25	+	.	ID=2343;Type=complex;Left=chr16:33857196-33857606;Right=chr16:33857588-33857996
chr16	CG	SV	33859767	33863532	64	.	.	ID=480;Type=complex;Left=chr16:33859767-33860096-;Right=chr16:33862766-33863532-;Distance=3436;DiscordantMatePairAlignments=64;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	33859767	33860096	64	-	.	ID=480;Type=complex;Left=chr16:33859767-33860096;Right=chr16:33862766-33863532
chr16	CG	SV	33862766	33863532	64	-	.	ID=480;Type=complex;Left=chr16:33859767-33860096;Right=chr16:33862766-33863532
chr16	CG	SV	55174529	55175369	13	.	.	ID=2339;Type=deletion;Left=chr16:55174529-55174994+;Right=chr16:55174863-55175369+;Distance=334;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66919203 (chr16:55174529-55174863);Frequency=0.82
chr16	CG	SV	55174529	55174994	13	+	.	ID=2339;Type=deletion;Left=chr16:55174529-55174994;Right=chr16:55174863-55175369
chr16	CG	SV	55174863	55175369	13	+	.	ID=2339;Type=deletion;Left=chr16:55174529-55174994;Right=chr16:55174863-55175369
chr16	CG	SV	56282896	56285830	87	.	.	ID=2337;Type=deletion;Left=chr16:56282896-56283226+;Right=chr16:56285347-56285830+;Distance=2451;DiscordantMatePairAlignments=87;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr16	CG	SV	56282896	56283226	87	+	.	ID=2337;Type=deletion;Left=chr16:56282896-56283226;Right=chr16:56285347-56285830
chr16	CG	SV	56285347	56285830	87	+	.	ID=2337;Type=deletion;Left=chr16:56282896-56283226;Right=chr16:56285347-56285830
chr16	CG	SV	68318979	68320738	52	.	.	ID=451;Type=distal-duplication;Left=chr16:68318979-68319307-;Right=chr16:68320423-68320738+;Distance=1116;DiscordantMatePairAlignments=52;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr16	CG	SV	68318979	68319307	52	-	.	ID=451;Type=distal-duplication;Left=chr16:68318979-68319307;Right=chr16:68320423-68320738
chr16	CG	SV	68320423	68320738	52	-	.	ID=451;Type=distal-duplication;Left=chr16:68318979-68319307;Right=chr16:68320423-68320738
chr16	CG	SV	68319632	68320388	181	.	.	ID=4148;Type=distal-duplication;Left=chr16:68319632-68319936+;Right=chr16:68319970-68320388-;Distance=756;DiscordantMatePairAlignments=181;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr16	CG	SV	68319632	68319936	181	+	.	ID=4148;Type=distal-duplication;Left=chr16:68319632-68319936;Right=chr16:68319970-68320388
chr16	CG	SV	68319970	68320388	181	+	.	ID=4148;Type=distal-duplication;Left=chr16:68319632-68319936;Right=chr16:68319970-68320388
chr16	CG	SV	68411633	68416522	48	.	.	ID=457;Type=tandem-duplication;Left=chr16:68411633-68412186-;Right=chr16:68416400-68416522-;Distance=4336;DiscordantMatePairAlignments=48;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=Self chain;LeftGenes=NM_007014:+;NM_199423:+;RightGenes=NM_007014:+;NM_199423:+;XRef=;Frequency=0.41
chr16	CG	SV	68411633	68412186	48	-	.	ID=457;Type=tandem-duplication;Left=chr16:68411633-68412186;Right=chr16:68416400-68416522
chr16	CG	SV	68416400	68416522	48	-	.	ID=457;Type=tandem-duplication;Left=chr16:68411633-68412186;Right=chr16:68416400-68416522
chr16	CG	SV	69535441	69537933	183	.	.	ID=2332;Type=deletion;Left=chr16:69535441-69536068+;Right=chr16:69537237-69537933+;Distance=1796;DiscordantMatePairAlignments=183;LeftRepeat=MIRb:SINE:MIR;RightRepeat=L2:LINE:L2;LeftGenes=NM_032821:-;RightGenes=NM_032821:-;XRef=rs67363752 (chr16:69535300-69537395);Frequency=1.00
chr16	CG	SV	69535441	69536068	183	+	.	ID=2332;Type=deletion;Left=chr16:69535441-69536068;Right=chr16:69537237-69537933
chr16	CG	SV	69537237	69537933	183	+	.	ID=2332;Type=deletion;Left=chr16:69535441-69536068;Right=chr16:69537237-69537933
chr16	CG	SV	69721878	69722729	16	.	.	ID=2331;Type=deletion;Left=chr16:69721878-69722347+;Right=chr16:69722205-69722729+;Distance=327;DiscordantMatePairAlignments=16;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_017558:-;NM_032821:-;RightGenes=NM_017558:-;NM_032821:-;XRef=rs66885572 (chr16:69721878-69722205);Frequency=1.00
chr16	CG	SV	69721878	69722347	16	+	.	ID=2331;Type=deletion;Left=chr16:69721878-69722347;Right=chr16:69722205-69722729
chr16	CG	SV	69722205	69722729	16	+	.	ID=2331;Type=deletion;Left=chr16:69721878-69722347;Right=chr16:69722205-69722729
chr16	CG	SV	73987397	73988362	23	.	.	ID=2329;Type=deletion;Left=chr16:73987397-73987729+;Right=chr16:73988239-73988362+;Distance=842;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_006324:-;RightGenes=NM_006324:-;XRef=;Frequency=0.82
chr16	CG	SV	73987397	73987729	23	+	.	ID=2329;Type=deletion;Left=chr16:73987397-73987729;Right=chr16:73988239-73988362
chr16	CG	SV	73988239	73988362	23	+	.	ID=2329;Type=deletion;Left=chr16:73987397-73987729;Right=chr16:73988239-73988362
chr16	CG	SV	76596029	76598877	62	.	.	ID=2327;Type=distal-duplication;Left=chr16:76596029-76596584+;Right=chr16:76598692-76598877+;Distance=2663;DiscordantMatePairAlignments=62;LeftRepeat=;RightRepeat=MLT1F:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr16	CG	SV	76596029	76596584	62	+	.	ID=2327;Type=distal-duplication;Left=chr16:76596029-76596584;Right=chr16:76598692-76598877
chr16	CG	SV	76598692	76598877	62	+	.	ID=2327;Type=distal-duplication;Left=chr16:76596029-76596584;Right=chr16:76598692-76598877
chr16	CG	SV	76595416	76598872	60	.	.	ID=455;Type=distal-duplication;Left=chr16:76595416-76596039-;Right=chr16:76598688-76598872-;Distance=2833;DiscordantMatePairAlignments=60;LeftRepeat=;RightRepeat=MLT1F:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr16	CG	SV	76595416	76596039	60	-	.	ID=455;Type=distal-duplication;Left=chr16:76595416-76596039;Right=chr16:76598688-76598872
chr16	CG	SV	76598688	76598872	60	-	.	ID=455;Type=distal-duplication;Left=chr16:76595416-76596039;Right=chr16:76598688-76598872
chr16	CG	SV	76929139	76942933	139	.	.	ID=2326;Type=deletion;Left=chr16:76929139-76929645+;Right=chr16:76942399-76942933+;Distance=13260;DiscordantMatePairAlignments=139;LeftRepeat=;RightRepeat=L1MB8:LINE:L1;LeftGenes=NM_016373:+;RightGenes=NM_016373:+;XRef=;Frequency=0.35
chr16	CG	SV	76929139	76929645	139	+	.	ID=2326;Type=deletion;Left=chr16:76929139-76929645;Right=chr16:76942399-76942933
chr16	CG	SV	76942399	76942933	139	+	.	ID=2326;Type=deletion;Left=chr16:76929139-76929645;Right=chr16:76942399-76942933
chr16	CG	SV	77153911	77320099	84	.	.	ID=454;Type=tandem-duplication;Left=chr16:77153911-77154461-;Right=chr16:77319677-77320099-;Distance=165638;DiscordantMatePairAlignments=84;LeftRepeat=;RightRepeat=MIR3:SINE:MIR;LeftGenes=NM_016373:+;RightGenes=NM_016373:+;XRef=;Frequency=0.00
chr16	CG	SV	77153911	77154461	84	-	.	ID=454;Type=tandem-duplication;Left=chr16:77153911-77154461;Right=chr16:77319677-77320099
chr16	CG	SV	77319677	77320099	84	-	.	ID=454;Type=tandem-duplication;Left=chr16:77153911-77154461;Right=chr16:77319677-77320099
chr16	CG	SV	79026145	79027082	10	.	.	ID=2325;Type=deletion;Left=chr16:79026145-79026592+;Right=chr16:79026458-79027082+;Distance=313;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr16	CG	SV	79026145	79026592	10	+	.	ID=2325;Type=deletion;Left=chr16:79026145-79026592;Right=chr16:79026458-79027082
chr16	CG	SV	79026458	79027082	10	+	.	ID=2325;Type=deletion;Left=chr16:79026145-79026592;Right=chr16:79026458-79027082
chr16	CG	SV	79534006	79541030	18	.	.	ID=2324;Type=deletion;Left=chr16:79534006-79534472+;Right=chr16:79540786-79541030+;Distance=6780;DiscordantMatePairAlignments=18;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr16	CG	SV	79534006	79534472	18	+	.	ID=2324;Type=deletion;Left=chr16:79534006-79534472;Right=chr16:79540786-79541030
chr16	CG	SV	79540786	79541030	18	+	.	ID=2324;Type=deletion;Left=chr16:79534006-79534472;Right=chr16:79540786-79541030
chr16	CG	SV	79731413	79732194	22	.	.	ID=2322;Type=deletion;Left=chr16:79731413-79732052+;Right=chr16:79731920-79732194+;Distance=507;DiscordantMatePairAlignments=22;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_052892:-;RightGenes=NM_052892:-;XRef=rs71136601 (chr16:79731342-79731850);Frequency=0.94
chr16	CG	SV	79731413	79732052	22	+	.	ID=2322;Type=deletion;Left=chr16:79731413-79732052;Right=chr16:79731920-79732194
chr16	CG	SV	79731920	79732194	22	+	.	ID=2322;Type=deletion;Left=chr16:79731413-79732052;Right=chr16:79731920-79732194
chr16	CG	SV	80355620	80356702	276	.	.	ID=452;Type=tandem-duplication;Left=chr16:80355620-80356159-;Right=chr16:80356186-80356702-;Distance=543;DiscordantMatePairAlignments=276;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr16	CG	SV	80355620	80356159	276	-	.	ID=452;Type=tandem-duplication;Left=chr16:80355620-80356159;Right=chr16:80356186-80356702
chr16	CG	SV	80356186	80356702	276	-	.	ID=452;Type=tandem-duplication;Left=chr16:80355620-80356159;Right=chr16:80356186-80356702
chr16	CG	SV	83745757	83747591	17	.	.	ID=449;Type=distal-duplication;Left=chr16:83745757-83746248-;Right=chr16:83747306-83747591+;Distance=1058;DiscordantMatePairAlignments=17;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	83745757	83746248	17	-	.	ID=449;Type=distal-duplication;Left=chr16:83745757-83746248;Right=chr16:83747306-83747591
chr16	CG	SV	83747306	83747591	17	-	.	ID=449;Type=distal-duplication;Left=chr16:83745757-83746248;Right=chr16:83747306-83747591
chr16	CG	SV	83746443	83747111	17	.	.	ID=4147;Type=distal-duplication;Left=chr16:83746443-83746838+;Right=chr16:83746813-83747111-;Distance=668;DiscordantMatePairAlignments=17;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	83746443	83746838	17	+	.	ID=4147;Type=distal-duplication;Left=chr16:83746443-83746838;Right=chr16:83746813-83747111
chr16	CG	SV	83746813	83747111	17	+	.	ID=4147;Type=distal-duplication;Left=chr16:83746443-83746838;Right=chr16:83746813-83747111
chr16	CG	SV	84841819	84842474	15	.	.	ID=2172;Type=deletion;Left=chr16:84841819-84842561+;Right=chr16:84842127-84842474+;Distance=308;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	84841819	84842561	15	+	.	ID=2172;Type=deletion;Left=chr16:84841819-84842561;Right=chr16:84842127-84842474
chr16	CG	SV	84842127	84842474	15	+	.	ID=2172;Type=deletion;Left=chr16:84841819-84842561;Right=chr16:84842127-84842474
chr16	CG	SV	87527250	87528026	18	.	.	ID=2169;Type=deletion;Left=chr16:87527250-87527643+;Right=chr16:87527694-87528026+;Distance=444;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;TAR1:Satellite:telo;Tandem period 63;RightRepeat=Self chain;LeftGenes=NM_005187:-;NM_175931:-;RightGenes=NM_005187:-;NM_175931:-;XRef=;Frequency=0.53
chr16	CG	SV	87527250	87527643	18	+	.	ID=2169;Type=deletion;Left=chr16:87527250-87527643;Right=chr16:87527694-87528026
chr16	CG	SV	87527694	87528026	18	+	.	ID=2169;Type=deletion;Left=chr16:87527250-87527643;Right=chr16:87527694-87528026
chr16	CG	SV	88326679	88327410	10	.	.	ID=2168;Type=deletion;Left=chr16:88326679-88327188+;Right=chr16:88327022-88327410+;Distance=343;DiscordantMatePairAlignments=10;LeftRepeat=(CCCTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 45;RightRepeat=Self chain;Tandem period 23;Tandem period 45;LeftGenes=NM_001113525:+;NM_152287:+;RightGenes=NM_001113525:+;NM_152287:+;XRef=rs71994275 (chr16:88326633-88326909);Frequency=0.59
chr16	CG	SV	88326679	88327188	10	+	.	ID=2168;Type=deletion;Left=chr16:88326679-88327188;Right=chr16:88327022-88327410
chr16	CG	SV	88327022	88327410	10	+	.	ID=2168;Type=deletion;Left=chr16:88326679-88327188;Right=chr16:88327022-88327410
chr17	CG	SV	20637	22213	145	.	.	ID=2167;Type=deletion;Left=chr17:20637-21019+;Right=chr17:21777-22213+;Distance=1140;DiscordantMatePairAlignments=145;LeftRepeat=(CCGGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 32;Tandem period 98;RightRepeat=SUBTEL_sa:Satellite:Satellite;Self chain;Tandem period 32;Tandem period 98;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr17	CG	SV	20637	21019	145	+	.	ID=2167;Type=deletion;Left=chr17:20637-21019;Right=chr17:21777-22213
chr17	CG	SV	21777	22213	145	+	.	ID=2167;Type=deletion;Left=chr17:20637-21019;Right=chr17:21777-22213
chr17	CG	SV	122942	123649	10	.	.	ID=2166;Type=deletion;Left=chr17:122942-123351+;Right=chr17:123418-123649+;Distance=476;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 28;RightRepeat=Self chain;Tandem period 28;LeftGenes=NM_006987:-;RightGenes=NM_006987:-;XRef=rs71143493 (chr17:122907-123383);Frequency=0.65
chr17	CG	SV	122942	123351	10	+	.	ID=2166;Type=deletion;Left=chr17:122942-123351;Right=chr17:123418-123649
chr17	CG	SV	123418	123649	10	+	.	ID=2166;Type=deletion;Left=chr17:122942-123351;Right=chr17:123418-123649
chr17	CG	SV	203211	203431	18	.	.	ID=447;Type=tandem-duplication;Left=chr17:203211-203334-;Right=chr17:203353-203431-;Distance=97;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;Tandem period 97;RightRepeat=Self chain;Tandem period 97;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr17	CG	SV	203211	203334	18	-	.	ID=447;Type=tandem-duplication;Left=chr17:203211-203334;Right=chr17:203353-203431
chr17	CG	SV	203353	203431	18	-	.	ID=447;Type=tandem-duplication;Left=chr17:203211-203334;Right=chr17:203353-203431
chr17	CG	SV	210551	211173	30	.	.	ID=2163;Type=deletion;Left=chr17:210551-211344+;Right=chr17:210893-211173+;Distance=342;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72311848 (chr17:210476-210818);Frequency=1.00
chr17	CG	SV	210551	211344	30	+	.	ID=2163;Type=deletion;Left=chr17:210551-211344;Right=chr17:210893-211173
chr17	CG	SV	210893	211173	30	+	.	ID=2163;Type=deletion;Left=chr17:210551-211344;Right=chr17:210893-211173
chr17	CG	SV	670609	671980	36	.	.	ID=2161;Type=deletion;Left=chr17:670609-671147+;Right=chr17:671748-671980+;Distance=1139;DiscordantMatePairAlignments=36;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem period 312;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_022463:-;RightGenes=NM_022463:-;XRef=;Frequency=0.94
chr17	CG	SV	670609	671147	36	+	.	ID=2161;Type=deletion;Left=chr17:670609-671147;Right=chr17:671748-671980
chr17	CG	SV	671748	671980	36	+	.	ID=2161;Type=deletion;Left=chr17:670609-671147;Right=chr17:671748-671980
chr17	CG	SV	685760	686651	68	.	.	ID=2160;Type=deletion;Left=chr17:685760-686214+;Right=chr17:686161-686651+;Distance=401;DiscordantMatePairAlignments=68;LeftRepeat=Self chain;Tandem period 133;Tandem period 45;RightRepeat=Self chain;LeftGenes=NM_022463:-;RightGenes=NM_022463:-;XRef=rs71371583 (chr17:685701-686103);Frequency=0.65
chr17	CG	SV	685760	686214	68	+	.	ID=2160;Type=deletion;Left=chr17:685760-686214;Right=chr17:686161-686651
chr17	CG	SV	686161	686651	68	+	.	ID=2160;Type=deletion;Left=chr17:685760-686214;Right=chr17:686161-686651
chr17	CG	SV	1068681	1070014	15	.	.	ID=309;Type=probable-inversion;Left=chr17:1068681-1069127-;Right=chr17:1069771-1070014+;Distance=644;DiscordantMatePairAlignments=15;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr17	CG	SV	1068681	1069127	15	-	.	ID=309;Type=probable-inversion;Left=chr17:1068681-1069127;Right=chr17:1069771-1070014
chr17	CG	SV	1069771	1070014	15	-	.	ID=309;Type=probable-inversion;Left=chr17:1068681-1069127;Right=chr17:1069771-1070014
chr17	CG	SV	1601419	1602633	27	.	.	ID=2158;Type=deletion;Left=chr17:1601419-1601949+;Right=chr17:1602150-1602633+;Distance=731;DiscordantMatePairAlignments=27;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSq:SINE:Alu;LeftGenes=NM_000934:+;NM_001165920:+;NM_001165921:+;RightGenes=NM_000934:+;NM_001165920:+;NM_001165921:+;XRef=;Frequency=0.47
chr17	CG	SV	1601419	1601949	27	+	.	ID=2158;Type=deletion;Left=chr17:1601419-1601949;Right=chr17:1602150-1602633
chr17	CG	SV	1602150	1602633	27	+	.	ID=2158;Type=deletion;Left=chr17:1601419-1601949;Right=chr17:1602150-1602633
chr17	CG	SV	8187408	8189130	42	.	.	ID=2157;Type=deletion;Left=chr17:8187408-8187870+;Right=chr17:8188764-8189130+;Distance=1356;DiscordantMatePairAlignments=42;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_153007:+;RightGenes=NM_153007:+;XRef=;Frequency=0.29
chr17	CG	SV	8187408	8187870	42	+	.	ID=2157;Type=deletion;Left=chr17:8187408-8187870;Right=chr17:8188764-8189130
chr17	CG	SV	8188764	8189130	42	+	.	ID=2157;Type=deletion;Left=chr17:8187408-8187870;Right=chr17:8188764-8189130
chr17	CG	SV	13161223	13161989	14	.	.	ID=2156;Type=deletion;Left=chr17:13161223-13161685+;Right=chr17:13161550-13161989+;Distance=327;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72225044 (chr17:13161202-13161529);Frequency=0.88
chr17	CG	SV	13161223	13161685	14	+	.	ID=2156;Type=deletion;Left=chr17:13161223-13161685;Right=chr17:13161550-13161989
chr17	CG	SV	13161550	13161989	14	+	.	ID=2156;Type=deletion;Left=chr17:13161223-13161685;Right=chr17:13161550-13161989
chr17	CG	SV	14130636	14132759	30	.	.	ID=2155;Type=deletion;Left=chr17:14130636-14131240+;Right=chr17:14132281-14132759+;Distance=1645;DiscordantMatePairAlignments=30;LeftRepeat=MER49:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71143412 (chr17:14130636-14132281);Frequency=1.00
chr17	CG	SV	14130636	14131240	30	+	.	ID=2155;Type=deletion;Left=chr17:14130636-14131240;Right=chr17:14132281-14132759
chr17	CG	SV	14132281	14132759	30	+	.	ID=2155;Type=deletion;Left=chr17:14130636-14131240;Right=chr17:14132281-14132759
chr17	CG	SV	17171241	17172370	105	.	.	ID=2153;Type=deletion;Left=chr17:17171241-17171857+;Right=chr17:17171982-17172370+;Distance=741;DiscordantMatePairAlignments=105;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_020201:+;RightGenes=NM_020201:+;XRef=rs66473553 (chr17:17171082-17171958);Frequency=0.82
chr17	CG	SV	17171241	17171857	105	+	.	ID=2153;Type=deletion;Left=chr17:17171241-17171857;Right=chr17:17171982-17172370
chr17	CG	SV	17171982	17172370	105	+	.	ID=2153;Type=deletion;Left=chr17:17171241-17171857;Right=chr17:17171982-17172370
chr17	CG	SV	21261870	21263985	207	.	.	ID=2150;Type=deletion;Left=chr17:21261870-21262446+;Right=chr17:21263414-21263985+;Distance=1544;DiscordantMatePairAlignments=207;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_021012:+;RightGenes=NM_021012:+;XRef=rs66470213 (chr17:21261871-21263414);Frequency=1.00
chr17	CG	SV	21261870	21262446	207	+	.	ID=2150;Type=deletion;Left=chr17:21261870-21262446;Right=chr17:21263414-21263985
chr17	CG	SV	21263414	21263985	207	+	.	ID=2150;Type=deletion;Left=chr17:21261870-21262446;Right=chr17:21263414-21263985
chr17	CG	SV	23804514	23808040	54	.	.	ID=2147;Type=deletion;Left=chr17:23804514-23804787+;Right=chr17:23807620-23808040+;Distance=3106;DiscordantMatePairAlignments=54;LeftRepeat=MER21B:LTR:ERV1;Self chain;RightRepeat=SVA:Other:Other;Self chain;Tandem period 40;LeftGenes=;RightGenes=;XRef=rs72148141 (chr17:23804512-23807618);Frequency=0.76
chr17	CG	SV	23804514	23804787	54	+	.	ID=2147;Type=deletion;Left=chr17:23804514-23804787;Right=chr17:23807620-23808040
chr17	CG	SV	23807620	23808040	54	+	.	ID=2147;Type=deletion;Left=chr17:23804514-23804787;Right=chr17:23807620-23808040
chr17	CG	SV	26581329	26581940	22	.	.	ID=4021;Type=probable-inversion;Left=chr17:26581329-26581494+;Right=chr17:26581472-26581940-;Distance=611;DiscordantMatePairAlignments=22;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_000267:+;NM_001042492:+;RightGenes=NM_000267:+;NM_001042492:+;XRef=;Frequency=0.00
chr17	CG	SV	26581329	26581494	22	+	.	ID=4021;Type=probable-inversion;Left=chr17:26581329-26581494;Right=chr17:26581472-26581940
chr17	CG	SV	26581472	26581940	22	+	.	ID=4021;Type=probable-inversion;Left=chr17:26581329-26581494;Right=chr17:26581472-26581940
chr17	CG	SV	35256195	35257417	51	.	.	ID=2144;Type=deletion;Left=chr17:35256195-35256632+;Right=chr17:35256963-35257417+;Distance=768;DiscordantMatePairAlignments=51;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_012481:-;NM_183228:-;NM_183229:-;NM_183230:-;NM_183231:-;NM_183232:-;RightGenes=NM_012481:-;NM_183228:-;NM_183229:-;NM_183230:-;NM_183231:-;NM_183232:-;XRef=;Frequency=0.00
chr17	CG	SV	35256195	35256632	51	+	.	ID=2144;Type=deletion;Left=chr17:35256195-35256632;Right=chr17:35256963-35257417
chr17	CG	SV	35256963	35257417	51	+	.	ID=2144;Type=deletion;Left=chr17:35256195-35256632;Right=chr17:35256963-35257417
chr17	CG	SV	38736786	38819356	47	.	.	ID=304;Type=probable-inversion;Left=chr17:38736786-38737115-;Right=chr17:38818959-38819356+;Distance=81844;DiscordantMatePairAlignments=47;LeftRepeat=SegDup;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=NR_027412:-;NR_027413:-;XRef=;Frequency=1.00
chr17	CG	SV	38736786	38737115	47	-	.	ID=304;Type=probable-inversion;Left=chr17:38736786-38737115;Right=chr17:38818959-38819356
chr17	CG	SV	38818959	38819356	47	-	.	ID=304;Type=probable-inversion;Left=chr17:38736786-38737115;Right=chr17:38818959-38819356
chr17	CG	SV	38738266	38755479	14	.	.	ID=2141;Type=deletion;Left=chr17:38738266-38738784+;Right=chr17:38755386-38755479+;Distance=17120;DiscordantMatePairAlignments=14;LeftRepeat=AluSx:SINE:Alu;SegDup;Self chain;Tandem A;RightRepeat=AluSg:SINE:Alu;SegDup;Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr17	CG	SV	38738266	38738784	14	+	.	ID=2141;Type=deletion;Left=chr17:38738266-38738784;Right=chr17:38755386-38755479
chr17	CG	SV	38755386	38755479	14	+	.	ID=2141;Type=deletion;Left=chr17:38738266-38738784;Right=chr17:38755386-38755479
chr17	CG	SV	38739015	38821869	20	.	.	ID=2140;Type=deletion;Left=chr17:38739015-38739321+;Right=chr17:38821536-38821869+;Distance=82521;DiscordantMatePairAlignments=20;LeftRepeat=MIRb:SINE:MIR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NR_027412:-;NR_027413:-;XRef=;Frequency=0.82
chr17	CG	SV	38739015	38739321	20	+	.	ID=2140;Type=deletion;Left=chr17:38739015-38739321;Right=chr17:38821536-38821869
chr17	CG	SV	38821536	38821869	20	+	.	ID=2140;Type=deletion;Left=chr17:38739015-38739321;Right=chr17:38821536-38821869
chr17	CG	SV	38793632	38796209	71	.	.	ID=2139;Type=deletion;Left=chr17:38793632-38794076+;Right=chr17:38795851-38796209+;Distance=2219;DiscordantMatePairAlignments=71;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66799059 (chr17:38793491-38795710);Frequency=0.41
chr17	CG	SV	38793632	38794076	71	+	.	ID=2139;Type=deletion;Left=chr17:38793632-38794076;Right=chr17:38795851-38796209
chr17	CG	SV	38795851	38796209	71	+	.	ID=2139;Type=deletion;Left=chr17:38793632-38794076;Right=chr17:38795851-38796209
chr17	CG	SV	38872602	38874151	10	.	.	ID=2137;Type=deletion;Left=chr17:38872602-38872977+;Right=chr17:38873890-38874151+;Distance=1288;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr17	CG	SV	38872602	38872977	10	+	.	ID=2137;Type=deletion;Left=chr17:38872602-38872977;Right=chr17:38873890-38874151
chr17	CG	SV	38873890	38874151	10	+	.	ID=2137;Type=deletion;Left=chr17:38872602-38872977;Right=chr17:38873890-38874151
chr17	CG	SV	42569727	42571252	191	.	.	ID=2135;Type=complex;Left=chr17:42569727-42570197+;Right=chr17:42571105-42571252+;Distance=1378;DiscordantMatePairAlignments=191;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42569727	42570197	191	+	.	ID=2135;Type=complex;Left=chr17:42569727-42570197;Right=chr17:42571105-42571252
chr17	CG	SV	42571105	42571252	191	+	.	ID=2135;Type=complex;Left=chr17:42569727-42570197;Right=chr17:42571105-42571252
chr17	CG	SV	42569727	42574765	258	.	.	ID=2134;Type=complex;Left=chr17:42569727-42570174+;Right=chr17:42574216-42574765+;Distance=4489;DiscordantMatePairAlignments=258;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42569727	42570174	258	+	.	ID=2134;Type=complex;Left=chr17:42569727-42570174;Right=chr17:42574216-42574765
chr17	CG	SV	42574216	42574765	258	+	.	ID=2134;Type=complex;Left=chr17:42569727-42570174;Right=chr17:42574216-42574765
chr17	CG	SV	42571256	42576329	12	.	.	ID=2131;Type=complex;Left=chr17:42571256-42571406+;Right=chr17:42576246-42576329+;Distance=4990;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42571256	42571406	12	+	.	ID=2131;Type=complex;Left=chr17:42571256-42571406;Right=chr17:42576246-42576329
chr17	CG	SV	42576246	42576329	12	+	.	ID=2131;Type=complex;Left=chr17:42571256-42571406;Right=chr17:42576246-42576329
chr17	CG	SV	42574803	42587140	10	.	.	ID=2128;Type=complex;Left=chr17:42574803-42574961+;Right=chr17:42587036-42587140+;Distance=12233;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=0.35
chr17	CG	SV	42574803	42574961	10	+	.	ID=2128;Type=complex;Left=chr17:42574803-42574961;Right=chr17:42587036-42587140
chr17	CG	SV	42587036	42587140	10	+	.	ID=2128;Type=complex;Left=chr17:42574803-42574961;Right=chr17:42587036-42587140
chr17	CG	SV	42574803	42589416	55	.	.	ID=2127;Type=complex;Left=chr17:42574803-42574967+;Right=chr17:42589272-42589416+;Distance=14469;DiscordantMatePairAlignments=55;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42574803	42574967	55	+	.	ID=2127;Type=complex;Left=chr17:42574803-42574967;Right=chr17:42589272-42589416
chr17	CG	SV	42589272	42589416	55	+	.	ID=2127;Type=complex;Left=chr17:42574803-42574967;Right=chr17:42589272-42589416
chr17	CG	SV	42576345	42589636	233	.	.	ID=2126;Type=complex;Left=chr17:42576345-42576447+;Right=chr17:42589277-42589636+;Distance=12932;DiscordantMatePairAlignments=233;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42576345	42576447	233	+	.	ID=2126;Type=complex;Left=chr17:42576345-42576447;Right=chr17:42589277-42589636
chr17	CG	SV	42589277	42589636	233	+	.	ID=2126;Type=complex;Left=chr17:42576345-42576447;Right=chr17:42589277-42589636
chr17	CG	SV	42584282	42589650	13	.	.	ID=2125;Type=complex;Left=chr17:42584282-42584384+;Right=chr17:42589268-42589650+;Distance=4986;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=0.88
chr17	CG	SV	42584282	42584384	13	+	.	ID=2125;Type=complex;Left=chr17:42584282-42584384;Right=chr17:42589268-42589650
chr17	CG	SV	42589268	42589650	13	+	.	ID=2125;Type=complex;Left=chr17:42584282-42584384;Right=chr17:42589268-42589650
chr17	CG	SV	42589489	42602408	23	.	.	ID=2122;Type=complex;Left=chr17:42589489-42589693+;Right=chr17:42602281-42602408+;Distance=12792;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42589489	42589693	23	+	.	ID=2122;Type=complex;Left=chr17:42589489-42589693;Right=chr17:42602281-42602408
chr17	CG	SV	42602281	42602408	23	+	.	ID=2122;Type=complex;Left=chr17:42589489-42589693;Right=chr17:42602281-42602408
chr17	CG	SV	42589747	42604396	34	.	.	ID=2121;Type=complex;Left=chr17:42589747-42590205+;Right=chr17:42604280-42604396+;Distance=14533;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42589747	42590205	34	+	.	ID=2121;Type=complex;Left=chr17:42589747-42590205;Right=chr17:42604280-42604396
chr17	CG	SV	42604280	42604396	34	+	.	ID=2121;Type=complex;Left=chr17:42589747-42590205;Right=chr17:42604280-42604396
chr17	CG	SV	42590669	42621645	84	.	.	ID=2118;Type=deletion;Left=chr17:42590669-42590770+;Right=chr17:42621509-42621645+;Distance=30840;DiscordantMatePairAlignments=84;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42590669	42590770	84	+	.	ID=2118;Type=deletion;Left=chr17:42590669-42590770;Right=chr17:42621509-42621645
chr17	CG	SV	42621509	42621645	84	+	.	ID=2118;Type=deletion;Left=chr17:42590669-42590770;Right=chr17:42621509-42621645
chr17	CG	SV	44392227	44393221	48	.	.	ID=2114;Type=deletion;Left=chr17:44392227-44392575+;Right=chr17:44392867-44393221+;Distance=640;DiscordantMatePairAlignments=48;LeftRepeat=Self chain;Tandem period 40;RightRepeat=Self chain;LeftGenes=NM_004123:-;RightGenes=NM_004123:-;XRef=rs71886448 (chr17:44392094-44392694);Frequency=1.00
chr17	CG	SV	44392227	44392575	48	+	.	ID=2114;Type=deletion;Left=chr17:44392227-44392575;Right=chr17:44392867-44393221
chr17	CG	SV	44392867	44393221	48	+	.	ID=2114;Type=deletion;Left=chr17:44392227-44392575;Right=chr17:44392867-44393221
chr17	CG	SV	44706794	44708472	71	.	.	ID=2113;Type=deletion;Left=chr17:44706794-44707229+;Right=chr17:44708097-44708472+;Distance=1303;DiscordantMatePairAlignments=71;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr17	CG	SV	44706794	44707229	71	+	.	ID=2113;Type=deletion;Left=chr17:44706794-44707229;Right=chr17:44708097-44708472
chr17	CG	SV	44708097	44708472	71	+	.	ID=2113;Type=deletion;Left=chr17:44706794-44707229;Right=chr17:44708097-44708472
chr17	CG	SV	45782537	45783093	12	.	.	ID=2112;Type=deletion;Left=chr17:45782537-45783040+;Right=chr17:45782921-45783093+;Distance=384;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_022167:+;RightGenes=NM_022167:+;XRef=rs71143435 (chr17:45782307-45782690);Frequency=0.47
chr17	CG	SV	45782537	45783040	12	+	.	ID=2112;Type=deletion;Left=chr17:45782537-45783040;Right=chr17:45782921-45783093
chr17	CG	SV	45782921	45783093	12	+	.	ID=2112;Type=deletion;Left=chr17:45782537-45783040;Right=chr17:45782921-45783093
chr17	CG	SV	65468885	65469678	146	.	.	ID=439;Type=tandem-duplication;Left=chr17:65468885-65469279-;Right=chr17:65469246-65469678-;Distance=399;DiscordantMatePairAlignments=146;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr17	CG	SV	65468885	65469279	146	-	.	ID=439;Type=tandem-duplication;Left=chr17:65468885-65469279;Right=chr17:65469246-65469678
chr17	CG	SV	65469246	65469678	146	-	.	ID=439;Type=tandem-duplication;Left=chr17:65468885-65469279;Right=chr17:65469246-65469678
chr17	CG	SV	65536270	65536914	35	.	.	ID=438;Type=tandem-duplication;Left=chr17:65536270-65536607-;Right=chr17:65536580-65536914-;Distance=307;DiscordantMatePairAlignments=35;LeftRepeat=L1P4e:LINE:L1;RightRepeat=L1P4e:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr17	CG	SV	65536270	65536607	35	-	.	ID=438;Type=tandem-duplication;Left=chr17:65536270-65536607;Right=chr17:65536580-65536914
chr17	CG	SV	65536580	65536914	35	-	.	ID=438;Type=tandem-duplication;Left=chr17:65536270-65536607;Right=chr17:65536580-65536914
chr17	CG	SV	76076487	76078739	28	.	.	ID=2100;Type=deletion;Left=chr17:76076487-76076967+;Right=chr17:76078475-76078739+;Distance=1988;DiscordantMatePairAlignments=28;LeftRepeat=G-rich:Low_complexity:Low_complexity;Tandem period 18;Tandem period 36;RightRepeat=G-rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=0.25
chr17	CG	SV	76076487	76076967	28	+	.	ID=2100;Type=deletion;Left=chr17:76076487-76076967;Right=chr17:76078475-76078739
chr17	CG	SV	76078475	76078739	28	+	.	ID=2100;Type=deletion;Left=chr17:76076487-76076967;Right=chr17:76078475-76078739
chr17	CG	SV	77085099	77086320	16	.	.	ID=2098;Type=deletion;Left=chr17:77085099-77085548+;Right=chr17:77086086-77086320+;Distance=987;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72252307 (chr17:77085099-77086086);Frequency=0.88
chr17	CG	SV	77085099	77085548	16	+	.	ID=2098;Type=deletion;Left=chr17:77085099-77085548;Right=chr17:77086086-77086320
chr17	CG	SV	77086086	77086320	16	+	.	ID=2098;Type=deletion;Left=chr17:77085099-77085548;Right=chr17:77086086-77086320
chr17	CG	SV	78653184	78654731	132	.	.	ID=2097;Type=deletion;Left=chr17:78653184-78653703+;Right=chr17:78654274-78654731+;Distance=1090;DiscordantMatePairAlignments=132;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72246678 (chr17:78653184-78654274);Frequency=0.59
chr17	CG	SV	78653184	78653703	132	+	.	ID=2097;Type=deletion;Left=chr17:78653184-78653703;Right=chr17:78654274-78654731
chr17	CG	SV	78654274	78654731	132	+	.	ID=2097;Type=deletion;Left=chr17:78653184-78653703;Right=chr17:78654274-78654731
chr18	CG	SV	98634	99367	46	.	.	ID=2068;Type=complex;Left=chr18:98634-99422+;Right=chr18:98906-99367+;Distance=272;DiscordantMatePairAlignments=46;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr18	CG	SV	98634	99422	46	+	.	ID=2068;Type=complex;Left=chr18:98634-99422;Right=chr18:98906-99367
chr18	CG	SV	98906	99367	46	+	.	ID=2068;Type=complex;Left=chr18:98634-99422;Right=chr18:98906-99367
chr18	CG	SV	98873	99703	17	.	.	ID=2087;Type=complex;Left=chr18:98873-99554+;Right=chr18:99161-99703+;Distance=288;DiscordantMatePairAlignments=17;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr18	CG	SV	98873	99554	17	+	.	ID=2087;Type=complex;Left=chr18:98873-99554;Right=chr18:99161-99703
chr18	CG	SV	99161	99703	17	+	.	ID=2087;Type=complex;Left=chr18:98873-99554;Right=chr18:99161-99703
chr18	CG	SV	5314645	5316654	26	.	.	ID=2066;Type=deletion;Left=chr18:5314645-5315084+;Right=chr18:5316244-5316654+;Distance=1599;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=L1PA11:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71657028 (chr18:5314645-5316244);Frequency=0.94
chr18	CG	SV	5314645	5315084	26	+	.	ID=2066;Type=deletion;Left=chr18:5314645-5315084;Right=chr18:5316244-5316654
chr18	CG	SV	5316244	5316654	26	+	.	ID=2066;Type=deletion;Left=chr18:5314645-5315084;Right=chr18:5316244-5316654
chr18	CG	SV	20244740	20246399	218	.	.	ID=2056;Type=deletion;Left=chr18:20244740-20245230+;Right=chr18:20246045-20246399+;Distance=1305;DiscordantMatePairAlignments=218;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr18	CG	SV	20244740	20245230	218	+	.	ID=2056;Type=deletion;Left=chr18:20244740-20245230;Right=chr18:20246045-20246399
chr18	CG	SV	20246045	20246399	218	+	.	ID=2056;Type=deletion;Left=chr18:20244740-20245230;Right=chr18:20246045-20246399
chr18	CG	SV	30915970	30916745	13	.	.	ID=2051;Type=deletion;Left=chr18:30915970-30916565+;Right=chr18:30916287-30916745+;Distance=317;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001143826:+;NM_001143827:+;NM_014268:+;NR_026570:+;RightGenes=NM_001143826:+;NM_001143827:+;NM_014268:+;NR_026570:+;XRef=rs72399344 (chr18:30915970-30916287);Frequency=0.47
chr18	CG	SV	30915970	30916565	13	+	.	ID=2051;Type=deletion;Left=chr18:30915970-30916565;Right=chr18:30916287-30916745
chr18	CG	SV	30916287	30916745	13	+	.	ID=2051;Type=deletion;Left=chr18:30915970-30916565;Right=chr18:30916287-30916745
chr18	CG	SV	33560058	33561158	162	.	.	ID=2050;Type=deletion;Left=chr18:33560058-33560605+;Right=chr18:33560630-33561158+;Distance=572;DiscordantMatePairAlignments=162;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72412845 (chr18:33560068-33560630);Frequency=0.71
chr18	CG	SV	33560058	33560605	162	+	.	ID=2050;Type=deletion;Left=chr18:33560058-33560605;Right=chr18:33560630-33561158
chr18	CG	SV	33560630	33561158	162	+	.	ID=2050;Type=deletion;Left=chr18:33560058-33560605;Right=chr18:33560630-33561158
chr18	CG	SV	35315644	35316497	10	.	.	ID=2048;Type=deletion;Left=chr18:35315644-35316004+;Right=chr18:35315974-35316497+;Distance=330;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NR_024391:-;RightGenes=NR_024391:-;XRef=rs35059019 (chr18:35315644-35315974);Frequency=1.00
chr18	CG	SV	35315644	35316004	10	+	.	ID=2048;Type=deletion;Left=chr18:35315644-35316004;Right=chr18:35315974-35316497
chr18	CG	SV	35315974	35316497	10	+	.	ID=2048;Type=deletion;Left=chr18:35315644-35316004;Right=chr18:35315974-35316497
chr18	CG	SV	39285543	39287032	65	.	.	ID=2047;Type=deletion;Left=chr18:39285543-39285978+;Right=chr18:39286528-39287032+;Distance=985;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=L1HS:LINE:L1;Tandem A;LeftGenes=;RightGenes=;XRef=rs72163979 (chr18:39285542-39286526);Frequency=0.88
chr18	CG	SV	39285543	39285978	65	+	.	ID=2047;Type=deletion;Left=chr18:39285543-39285978;Right=chr18:39286528-39287032
chr18	CG	SV	39286528	39287032	65	+	.	ID=2047;Type=deletion;Left=chr18:39285543-39285978;Right=chr18:39286528-39287032
chr18	CG	SV	41515012	41515813	24	.	.	ID=2046;Type=deletion;Left=chr18:41515012-41515551+;Right=chr18:41515337-41515813+;Distance=325;DiscordantMatePairAlignments=24;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_007163:+;RightGenes=NM_007163:+;XRef=rs68176567 (chr18:41515001-41515326);Frequency=1.00
chr18	CG	SV	41515012	41515551	24	+	.	ID=2046;Type=deletion;Left=chr18:41515012-41515551;Right=chr18:41515337-41515813
chr18	CG	SV	41515337	41515813	24	+	.	ID=2046;Type=deletion;Left=chr18:41515012-41515551;Right=chr18:41515337-41515813
chr18	CG	SV	44378587	46768138	121	.	.	ID=378;Type=tandem-duplication;Left=chr18:44378587-44379122-;Right=chr18:46767721-46768138-;Distance=2389016;DiscordantMatePairAlignments=121;LeftRepeat=;RightRepeat=MER20B:DNA:MER1_type;LeftGenes=NM_001142397:+;NM_014772:+;RightGenes=NM_018696:+;XRef=;Frequency=0.00
chr18	CG	SV	44378587	44379122	121	-	.	ID=378;Type=tandem-duplication;Left=chr18:44378587-44379122;Right=chr18:46767721-46768138
chr18	CG	SV	46767721	46768138	121	-	.	ID=378;Type=tandem-duplication;Left=chr18:44378587-44379122;Right=chr18:46767721-46768138
chr18	CG	SV	45273866	45274617	32	.	.	ID=2043;Type=deletion;Left=chr18:45273866-45274469+;Right=chr18:45274188-45274617+;Distance=322;DiscordantMatePairAlignments=32;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs33917211 (chr18:45273849-45274171);Frequency=0.82
chr18	CG	SV	45273866	45274469	32	+	.	ID=2043;Type=deletion;Left=chr18:45273866-45274469;Right=chr18:45274188-45274617
chr18	CG	SV	45274188	45274617	32	+	.	ID=2043;Type=deletion;Left=chr18:45273866-45274469;Right=chr18:45274188-45274617
chr18	CG	SV	48716565	48717488	20	.	.	ID=2042;Type=deletion;Left=chr18:48716565-48716937+;Right=chr18:48717030-48717488+;Distance=465;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=;LeftGenes=NM_005215:+;RightGenes=NM_005215:+;XRef=rs72465148 (chr18:48716563-48717028);Frequency=0.53
chr18	CG	SV	48716565	48716937	20	+	.	ID=2042;Type=deletion;Left=chr18:48716565-48716937;Right=chr18:48717030-48717488
chr18	CG	SV	48717030	48717488	20	+	.	ID=2042;Type=deletion;Left=chr18:48716565-48716937;Right=chr18:48717030-48717488
chr18	CG	SV	49390403	49392180	63	.	.	ID=2039;Type=deletion;Left=chr18:49390403-49390826+;Right=chr18:49391772-49392180+;Distance=1369;DiscordantMatePairAlignments=63;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr18	CG	SV	49390403	49390826	63	+	.	ID=2039;Type=deletion;Left=chr18:49390403-49390826;Right=chr18:49391772-49392180
chr18	CG	SV	49391772	49392180	63	+	.	ID=2039;Type=deletion;Left=chr18:49390403-49390826;Right=chr18:49391772-49392180
chr18	CG	SV	49459967	49465013	94	.	.	ID=2038;Type=deletion;Left=chr18:49459967-49460470+;Right=chr18:49464572-49465013+;Distance=4605;DiscordantMatePairAlignments=94;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr18	CG	SV	49459967	49460470	94	+	.	ID=2038;Type=deletion;Left=chr18:49459967-49460470;Right=chr18:49464572-49465013
chr18	CG	SV	49464572	49465013	94	+	.	ID=2038;Type=deletion;Left=chr18:49459967-49460470;Right=chr18:49464572-49465013
chr18	CG	SV	50206966	50211403	149	.	.	ID=2037;Type=deletion;Left=chr18:50206966-50207383+;Right=chr18:50210962-50211403+;Distance=3996;DiscordantMatePairAlignments=149;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66588236 (chr18:50206961-50210957);Frequency=0.94
chr18	CG	SV	50206966	50207383	149	+	.	ID=2037;Type=deletion;Left=chr18:50206966-50207383;Right=chr18:50210962-50211403
chr18	CG	SV	50210962	50211403	149	+	.	ID=2037;Type=deletion;Left=chr18:50206966-50207383;Right=chr18:50210962-50211403
chr18	CG	SV	53097735	53100202	252	.	.	ID=2036;Type=deletion;Left=chr18:53097735-53098247+;Right=chr18:53099715-53100202+;Distance=1980;DiscordantMatePairAlignments=252;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66803181 (chr18:53097735-53099715);Frequency=1.00
chr18	CG	SV	53097735	53098247	252	+	.	ID=2036;Type=deletion;Left=chr18:53097735-53098247;Right=chr18:53099715-53100202
chr18	CG	SV	53099715	53100202	252	+	.	ID=2036;Type=deletion;Left=chr18:53097735-53098247;Right=chr18:53099715-53100202
chr18	CG	SV	53328450	53329245	24	.	.	ID=2035;Type=deletion;Left=chr18:53328450-53328984+;Right=chr18:53329079-53329245+;Distance=629;DiscordantMatePairAlignments=24;LeftRepeat=AluSp:SINE:Alu;Tandem period 313;RightRepeat=Tandem period 313;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr18	CG	SV	53328450	53328984	24	+	.	ID=2035;Type=deletion;Left=chr18:53328450-53328984;Right=chr18:53329079-53329245
chr18	CG	SV	53329079	53329245	24	+	.	ID=2035;Type=deletion;Left=chr18:53328450-53328984;Right=chr18:53329079-53329245
chr18	CG	SV	57823757	57825610	26	.	.	ID=2032;Type=deletion;Left=chr18:57823757-57824257+;Right=chr18:57825216-57825610+;Distance=1459;DiscordantMatePairAlignments=26;LeftRepeat=THE1A:LTR:MaLR;RightRepeat=THE1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr18	CG	SV	57823757	57824257	26	+	.	ID=2032;Type=deletion;Left=chr18:57823757-57824257;Right=chr18:57825216-57825610
chr18	CG	SV	57825216	57825610	26	+	.	ID=2032;Type=deletion;Left=chr18:57823757-57824257;Right=chr18:57825216-57825610
chr18	CG	SV	59036610	59037037	45	.	.	ID=375;Type=tandem-duplication;Left=chr18:59036610-59036814-;Right=chr18:59036803-59037037-;Distance=223;DiscordantMatePairAlignments=45;LeftRepeat=(TCCA)n:Simple_repeat:Simple_repeat;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;LeftGenes=NM_000633:-;RightGenes=NM_000633:-;XRef=;Frequency=1.00
chr18	CG	SV	59036610	59036814	45	-	.	ID=375;Type=tandem-duplication;Left=chr18:59036610-59036814;Right=chr18:59036803-59037037
chr18	CG	SV	59036803	59037037	45	-	.	ID=375;Type=tandem-duplication;Left=chr18:59036610-59036814;Right=chr18:59036803-59037037
chr18	CG	SV	61684234	61685093	11	.	.	ID=2031;Type=deletion;Left=chr18:61684234-61684632+;Right=chr18:61684578-61685093+;Distance=344;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_004361:+;NM_033646:+;RightGenes=NM_004361:+;NM_033646:+;XRef=rs71170298 (chr18:61684234-61684578);Frequency=1.00
chr18	CG	SV	61684234	61684632	11	+	.	ID=2031;Type=deletion;Left=chr18:61684234-61684632;Right=chr18:61684578-61685093
chr18	CG	SV	61684578	61685093	11	+	.	ID=2031;Type=deletion;Left=chr18:61684234-61684632;Right=chr18:61684578-61685093
chr18	CG	SV	64379937	64380781	14	.	.	ID=2030;Type=deletion;Left=chr18:64379937-64380277+;Right=chr18:64380315-64380781+;Distance=378;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs6146366 (chr18:64379937-64380315);Frequency=0.53
chr18	CG	SV	64379937	64380277	14	+	.	ID=2030;Type=deletion;Left=chr18:64379937-64380277;Right=chr18:64380315-64380781
chr18	CG	SV	64380315	64380781	14	+	.	ID=2030;Type=deletion;Left=chr18:64379937-64380277;Right=chr18:64380315-64380781
chr18	CG	SV	72476184	72477576	180	.	.	ID=2022;Type=deletion;Left=chr18:72476184-72476704+;Right=chr18:72476985-72477576+;Distance=801;DiscordantMatePairAlignments=180;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr18	CG	SV	72476184	72476704	180	+	.	ID=2022;Type=deletion;Left=chr18:72476184-72476704;Right=chr18:72476985-72477576
chr18	CG	SV	72476985	72477576	180	+	.	ID=2022;Type=deletion;Left=chr18:72476184-72476704;Right=chr18:72476985-72477576
chr18	CG	SV	73395986	73397737	106	.	.	ID=2019;Type=deletion;Left=chr18:73395986-73396526+;Right=chr18:73397148-73397737+;Distance=1162;DiscordantMatePairAlignments=106;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66626305 (chr18:73395985-73397147);Frequency=0.82
chr18	CG	SV	73395986	73396526	106	+	.	ID=2019;Type=deletion;Left=chr18:73395986-73396526;Right=chr18:73397148-73397737
chr18	CG	SV	73397148	73397737	106	+	.	ID=2019;Type=deletion;Left=chr18:73395986-73396526;Right=chr18:73397148-73397737
chr18	CG	SV	74763449	74767805	88	.	.	ID=2018;Type=deletion;Left=chr18:74763449-74764021+;Right=chr18:74767312-74767805+;Distance=3863;DiscordantMatePairAlignments=88;LeftRepeat=Self chain;Tandem period 48;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72010801 (chr18:74763476-74767311);Frequency=0.29
chr18	CG	SV	74763449	74764021	88	+	.	ID=2018;Type=deletion;Left=chr18:74763449-74764021;Right=chr18:74767312-74767805
chr18	CG	SV	74767312	74767805	88	+	.	ID=2018;Type=deletion;Left=chr18:74763449-74764021;Right=chr18:74767312-74767805
chr18	CG	SV	75061609	75061767	407	.	.	ID=374;Type=tandem-duplication;Left=chr18:75061609-75061688-;Right=chr18:75061666-75061767-;Distance=79;DiscordantMatePairAlignments=407;LeftRepeat=Self chain;RightRepeat=G-rich:Low_complexity:Low_complexity;Self chain;LeftGenes=NM_198531:+;RightGenes=NM_198531:+;XRef=;Frequency=1.00
chr18	CG	SV	75061609	75061688	407	-	.	ID=374;Type=tandem-duplication;Left=chr18:75061609-75061688;Right=chr18:75061666-75061767
chr18	CG	SV	75061666	75061767	407	-	.	ID=374;Type=tandem-duplication;Left=chr18:75061609-75061688;Right=chr18:75061666-75061767
chr18	CG	SV	75410947	75413609	209	.	.	ID=2017;Type=deletion;Left=chr18:75410947-75411483+;Right=chr18:75413087-75413609+;Distance=2140;DiscordantMatePairAlignments=209;LeftRepeat=Self chain;Tandem period 54;RightRepeat=Self chain;Tandem period 54;LeftGenes=;RightGenes=;XRef=rs71172180 (chr18:75410938-75413079);Frequency=0.59
chr18	CG	SV	75410947	75411483	209	+	.	ID=2017;Type=deletion;Left=chr18:75410947-75411483;Right=chr18:75413087-75413609
chr18	CG	SV	75413087	75413609	209	+	.	ID=2017;Type=deletion;Left=chr18:75410947-75411483;Right=chr18:75413087-75413609
chr19	CG	SV	902245	902747	20	+	.	ID=1950;Type=complex;Left=chr19:902245-902747+;Right=chr20:18542658-18543254+;Distance=;DiscordantMatePairAlignments=20;LeftRepeat=FLAM_C:SINE:Alu;Self chain;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_005224:+;RightGenes=NM_080820:+;XRef=;Frequency=0.00
chr20	CG	SV	18542658	18543254	20	+	.	ID=1950;Type=complex;Left=chr19:902245-902747+;Right=chr20:18542658-18543254+;Distance=;DiscordantMatePairAlignments=20;LeftRepeat=FLAM_C:SINE:Alu;Self chain;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_005224:+;RightGenes=NM_080820:+;XRef=;Frequency=0.00
chr19	CG	SV	966453	966995	10	.	.	ID=369;Type=tandem-duplication;Left=chr19:966453-966732-;Right=chr19:966727-966995-;Distance=263;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001033026:-;NM_033420:-;RightGenes=NM_001033026:-;NM_033420:-;XRef=;Frequency=0.06
chr19	CG	SV	966453	966732	10	-	.	ID=369;Type=tandem-duplication;Left=chr19:966453-966732;Right=chr19:966727-966995
chr19	CG	SV	966727	966995	10	-	.	ID=369;Type=tandem-duplication;Left=chr19:966453-966732;Right=chr19:966727-966995
chr19	CG	SV	1092833	1093274	23	.	.	ID=368;Type=tandem-duplication;Left=chr19:1092833-1093020-;Right=chr19:1093116-1093274-;Distance=254;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;Tandem period 30;RightRepeat=Self chain;LeftGenes=NM_014963:-;RightGenes=NM_014963:-;XRef=;Frequency=1.00
chr19	CG	SV	1092833	1093020	23	-	.	ID=368;Type=tandem-duplication;Left=chr19:1092833-1093020;Right=chr19:1093116-1093274
chr19	CG	SV	1093116	1093274	23	-	.	ID=368;Type=tandem-duplication;Left=chr19:1092833-1093020;Right=chr19:1093116-1093274
chr19	CG	SV	1133661	1134491	12	.	.	ID=2014;Type=deletion;Left=chr19:1133661-1134347+;Right=chr19:1134209-1134491+;Distance=548;DiscordantMatePairAlignments=12;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr19	CG	SV	1133661	1134347	12	+	.	ID=2014;Type=deletion;Left=chr19:1133661-1134347;Right=chr19:1134209-1134491
chr19	CG	SV	1134209	1134491	12	+	.	ID=2014;Type=deletion;Left=chr19:1133661-1134347;Right=chr19:1134209-1134491
chr19	CG	SV	4569612	4571142	120	.	.	ID=2011;Type=deletion;Left=chr19:4569612-4570084+;Right=chr19:4570596-4571142+;Distance=984;DiscordantMatePairAlignments=120;LeftRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 17;RightRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 17;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr19	CG	SV	4569612	4570084	120	+	.	ID=2011;Type=deletion;Left=chr19:4569612-4570084;Right=chr19:4570596-4571142
chr19	CG	SV	4570596	4571142	120	+	.	ID=2011;Type=deletion;Left=chr19:4569612-4570084;Right=chr19:4570596-4571142
chr19	CG	SV	4690142	4690702	11	.	.	ID=4004;Type=probable-inversion;Left=chr19:4690142-4690484+;Right=chr19:4690411-4690702-;Distance=560;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr19	CG	SV	4690142	4690484	11	+	.	ID=4004;Type=probable-inversion;Left=chr19:4690142-4690484;Right=chr19:4690411-4690702
chr19	CG	SV	4690411	4690702	11	+	.	ID=4004;Type=probable-inversion;Left=chr19:4690142-4690484;Right=chr19:4690411-4690702
chr19	CG	SV	8317885	8320973	11	.	.	ID=2008;Type=deletion;Left=chr19:8317885-8318440+;Right=chr19:8320501-8320973+;Distance=2616;DiscordantMatePairAlignments=11;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr19	CG	SV	8317885	8318440	11	+	.	ID=2008;Type=deletion;Left=chr19:8317885-8318440;Right=chr19:8320501-8320973
chr19	CG	SV	8320501	8320973	11	+	.	ID=2008;Type=deletion;Left=chr19:8317885-8318440;Right=chr19:8320501-8320973
chr19	CG	SV	8420425	8421247	19	.	.	ID=2007;Type=deletion;Left=chr19:8420425-8421113+;Right=chr19:8420732-8421247+;Distance=307;DiscordantMatePairAlignments=19;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_005968:+;NM_031203:+;RightGenes=NM_005968:+;NM_031203:+;XRef=rs71166204 (chr19:8420425-8420732);Frequency=1.00
chr19	CG	SV	8420425	8421113	19	+	.	ID=2007;Type=deletion;Left=chr19:8420425-8421113;Right=chr19:8420732-8421247
chr19	CG	SV	8420732	8421247	19	+	.	ID=2007;Type=deletion;Left=chr19:8420425-8421113;Right=chr19:8420732-8421247
chr19	CG	SV	8943608	18656438	134	.	.	ID=3996;Type=probable-inversion;Left=chr19:8943608-8943969+;Right=chr19:18655817-18656438-;Distance=9712830;DiscordantMatePairAlignments=134;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_024690:-;RightGenes=NM_001098482:+;NM_015321:+;XRef=;Frequency=0.00
chr19	CG	SV	8943608	8943969	134	+	.	ID=3996;Type=probable-inversion;Left=chr19:8943608-8943969;Right=chr19:18655817-18656438
chr19	CG	SV	18655817	18656438	134	+	.	ID=3996;Type=probable-inversion;Left=chr19:8943608-8943969;Right=chr19:18655817-18656438
chr19	CG	SV	14567225	14567835	15	.	.	ID=366;Type=tandem-duplication;Left=chr19:14567225-14567528-;Right=chr19:14567544-14567835-;Distance=307;DiscordantMatePairAlignments=15;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=NM_207390:+;RightGenes=NM_207390:+;XRef=;Frequency=0.82
chr19	CG	SV	14567225	14567528	15	-	.	ID=366;Type=tandem-duplication;Left=chr19:14567225-14567528;Right=chr19:14567544-14567835
chr19	CG	SV	14567544	14567835	15	-	.	ID=366;Type=tandem-duplication;Left=chr19:14567225-14567528;Right=chr19:14567544-14567835
chr19	CG	SV	14907392	14910909	53	.	.	ID=1998;Type=deletion;Left=chr19:14907392-14907736+;Right=chr19:14910478-14910909+;Distance=3086;DiscordantMatePairAlignments=53;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr19	CG	SV	14907392	14907736	53	+	.	ID=1998;Type=deletion;Left=chr19:14907392-14907736;Right=chr19:14910478-14910909
chr19	CG	SV	14910478	14910909	53	+	.	ID=1998;Type=deletion;Left=chr19:14907392-14907736;Right=chr19:14910478-14910909
chr19	CG	SV	17303249	17311547	10	.	.	ID=364;Type=tandem-duplication;Left=chr19:17303249-17303744-;Right=chr19:17311245-17311547-;Distance=7803;DiscordantMatePairAlignments=10;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_020959:-;RightGenes=NM_001128855:+;NM_032620:+;NM_133644:+;XRef=;Frequency=0.00
chr19	CG	SV	17303249	17303744	10	-	.	ID=364;Type=tandem-duplication;Left=chr19:17303249-17303744;Right=chr19:17311245-17311547
chr19	CG	SV	17311245	17311547	10	-	.	ID=364;Type=tandem-duplication;Left=chr19:17303249-17303744;Right=chr19:17311245-17311547
chr19	CG	SV	34642037	34648553	167	.	.	ID=1961;Type=deletion;Left=chr19:34642037-34642715+;Right=chr19:34648007-34648553+;Distance=5970;DiscordantMatePairAlignments=167;LeftRepeat=L1PA2:LINE:L1;Self chain;RightRepeat=HAL1b:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs72413604 (chr19:34642037-34648020);Frequency=0.59
chr19	CG	SV	34642037	34642715	167	+	.	ID=1961;Type=deletion;Left=chr19:34642037-34642715;Right=chr19:34648007-34648553
chr19	CG	SV	34648007	34648553	167	+	.	ID=1961;Type=deletion;Left=chr19:34642037-34642715;Right=chr19:34648007-34648553
chr19	CG	SV	35080655	35085549	109	.	.	ID=1959;Type=deletion;Left=chr19:35080655-35081018+;Right=chr19:35084966-35085549+;Distance=4311;DiscordantMatePairAlignments=109;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem ATTTTT;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	35080655	35081018	109	+	.	ID=1959;Type=deletion;Left=chr19:35080655-35081018;Right=chr19:35084966-35085549
chr19	CG	SV	35084966	35085549	109	+	.	ID=1959;Type=deletion;Left=chr19:35080655-35081018;Right=chr19:35084966-35085549
chr19	CG	SV	35979345	35981989	42	.	.	ID=1957;Type=deletion;Left=chr19:35979345-35979878+;Right=chr19:35981618-35981989+;Distance=2273;DiscordantMatePairAlignments=42;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr19	CG	SV	35979345	35979878	42	+	.	ID=1957;Type=deletion;Left=chr19:35979345-35979878;Right=chr19:35981618-35981989
chr19	CG	SV	35981618	35981989	42	+	.	ID=1957;Type=deletion;Left=chr19:35979345-35979878;Right=chr19:35981618-35981989
chr19	CG	SV	37778419	37779241	70	.	.	ID=329;Type=tandem-duplication;Left=chr19:37778419-37778751-;Right=chr19:37778888-37779241-;Distance=490;DiscordantMatePairAlignments=70;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr19	CG	SV	37778419	37778751	70	-	.	ID=329;Type=tandem-duplication;Left=chr19:37778419-37778751;Right=chr19:37778888-37779241
chr19	CG	SV	37778888	37779241	70	-	.	ID=329;Type=tandem-duplication;Left=chr19:37778419-37778751;Right=chr19:37778888-37779241
chr19	CG	SV	42152628	42153595	50	.	.	ID=1954;Type=deletion;Left=chr19:42152628-42153040+;Right=chr19:42153179-42153595+;Distance=551;DiscordantMatePairAlignments=50;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr19	CG	SV	42152628	42153040	50	+	.	ID=1954;Type=deletion;Left=chr19:42152628-42153040;Right=chr19:42153179-42153595
chr19	CG	SV	42153179	42153595	50	+	.	ID=1954;Type=deletion;Left=chr19:42152628-42153040;Right=chr19:42153179-42153595
chr19	CG	SV	44115509	44375931	21	.	.	ID=325;Type=tandem-duplication;Left=chr19:44115509-44115845-;Right=chr19:44375547-44375931-;Distance=260086;DiscordantMatePairAlignments=21;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	44115509	44115845	21	-	.	ID=325;Type=tandem-duplication;Left=chr19:44115509-44115845;Right=chr19:44375547-44375931
chr19	CG	SV	44375547	44375931	21	-	.	ID=325;Type=tandem-duplication;Left=chr19:44115509-44115845;Right=chr19:44375547-44375931
chr19	CG	SV	48220377	48548654	42	.	.	ID=324;Type=tandem-duplication;Left=chr19:48220377-48220955-;Right=chr19:48548228-48548654-;Distance=327699;DiscordantMatePairAlignments=42;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=NM_001113410:-;NM_002785:-;NM_203287:-;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	48220377	48220955	42	-	.	ID=324;Type=tandem-duplication;Left=chr19:48220377-48220955;Right=chr19:48548228-48548654
chr19	CG	SV	48548228	48548654	42	-	.	ID=324;Type=tandem-duplication;Left=chr19:48220377-48220955;Right=chr19:48548228-48548654
chr19	CG	SV	48532126	48537297	20	.	.	ID=259;Type=probable-inversion;Left=chr19:48532126-48532599-;Right=chr19:48536935-48537297+;Distance=4336;DiscordantMatePairAlignments=20;LeftRepeat=L2:LINE:L2;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	48532126	48532599	20	-	.	ID=259;Type=probable-inversion;Left=chr19:48532126-48532599;Right=chr19:48536935-48537297
chr19	CG	SV	48536935	48537297	20	-	.	ID=259;Type=probable-inversion;Left=chr19:48532126-48532599;Right=chr19:48536935-48537297
chr19	CG	SV	48874624	48875794	106	.	.	ID=323;Type=tandem-duplication;Left=chr19:48874624-48875206-;Right=chr19:48875481-48875794-;Distance=588;DiscordantMatePairAlignments=106;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	48874624	48875206	106	-	.	ID=323;Type=tandem-duplication;Left=chr19:48874624-48875206;Right=chr19:48875481-48875794
chr19	CG	SV	48875481	48875794	106	-	.	ID=323;Type=tandem-duplication;Left=chr19:48874624-48875206;Right=chr19:48875481-48875794
chr19	CG	SV	49347259	49371384	210	.	.	ID=258;Type=probable-inversion;Left=chr19:49347259-49347897-;Right=chr19:49370888-49371384+;Distance=22991;DiscordantMatePairAlignments=210;LeftRepeat=MLT1D:LTR:MaLR;Self chain;Tandem period 18;RightRepeat=Self chain;LeftGenes=NM_001144824:+;NM_006630:+;RightGenes=NM_001032372:+;NM_001032373:+;NM_001032374:+;NM_001146220:+;NM_015919:+;XRef=;Frequency=0.00
chr19	CG	SV	49347259	49347897	210	-	.	ID=258;Type=probable-inversion;Left=chr19:49347259-49347897;Right=chr19:49370888-49371384
chr19	CG	SV	49370888	49371384	210	-	.	ID=258;Type=probable-inversion;Left=chr19:49347259-49347897;Right=chr19:49370888-49371384
chr19	CG	SV	49467081	49471080	398	.	.	ID=3994;Type=probable-inversion;Left=chr19:49467081-49467651+;Right=chr19:49470643-49471080-;Distance=3999;DiscordantMatePairAlignments=398;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_181756:+;RightGenes=NM_181756:+;XRef=;Frequency=0.00
chr19	CG	SV	49467081	49467651	398	+	.	ID=3994;Type=probable-inversion;Left=chr19:49467081-49467651;Right=chr19:49470643-49471080
chr19	CG	SV	49470643	49471080	398	+	.	ID=3994;Type=probable-inversion;Left=chr19:49467081-49467651;Right=chr19:49470643-49471080
chr19	CG	SV	57787833	57789736	11	.	.	ID=1946;Type=deletion;Left=chr19:57787833-57788260+;Right=chr19:57789435-57789736+;Distance=1602;DiscordantMatePairAlignments=11;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72196700 (chr19:57787818-57789420);Frequency=0.47
chr19	CG	SV	57787833	57788260	11	+	.	ID=1946;Type=deletion;Left=chr19:57787833-57788260;Right=chr19:57789435-57789736
chr19	CG	SV	57789435	57789736	11	+	.	ID=1946;Type=deletion;Left=chr19:57787833-57788260;Right=chr19:57789435-57789736
chr19	CG	SV	58114026	58116432	17	.	.	ID=1945;Type=deletion;Left=chr19:58114026-58114483+;Right=chr19:58116036-58116432+;Distance=2010;DiscordantMatePairAlignments=17;LeftRepeat=SVA:Other:Other;Self chain;Tandem TCTCCC;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr19	CG	SV	58114026	58114483	17	+	.	ID=1945;Type=deletion;Left=chr19:58114026-58114483;Right=chr19:58116036-58116432
chr19	CG	SV	58116036	58116432	17	+	.	ID=1945;Type=deletion;Left=chr19:58114026-58114483;Right=chr19:58116036-58116432
chr19	CG	SV	58380998	58384281	63	.	.	ID=1943;Type=deletion;Left=chr19:58380998-58381303+;Right=chr19:58383780-58384281+;Distance=2782;DiscordantMatePairAlignments=63;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;Tandem T;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_024733:-;RightGenes=NM_024733:-;XRef=;Frequency=1.00
chr19	CG	SV	58380998	58381303	63	+	.	ID=1943;Type=deletion;Left=chr19:58380998-58381303;Right=chr19:58383780-58384281
chr19	CG	SV	58383780	58384281	63	+	.	ID=1943;Type=deletion;Left=chr19:58380998-58381303;Right=chr19:58383780-58384281
chr19	CG	SV	60733675	60734634	33	.	.	ID=1940;Type=deletion;Left=chr19:60733675-60734142+;Right=chr19:60734011-60734634+;Distance=336;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;Tandem period 131;Tandem period 168;Tandem period 19;Tandem period 57;RightRepeat=Self chain;Tandem period 37;Tandem period 38;LeftGenes=NM_001101401:-;RightGenes=NM_001101401:-;XRef=rs71171963 (chr19:60733648-60733984);Frequency=1.00
chr19	CG	SV	60733675	60734142	33	+	.	ID=1940;Type=deletion;Left=chr19:60733675-60734142;Right=chr19:60734011-60734634
chr19	CG	SV	60734011	60734634	33	+	.	ID=1940;Type=deletion;Left=chr19:60733675-60734142;Right=chr19:60734011-60734634
chr19	CG	SV	61283152	61284107	18	.	.	ID=1939;Type=deletion;Left=chr19:61283152-61283595+;Right=chr19:61283842-61284107+;Distance=690;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;Tandem period 69;RightRepeat=Self chain;Tandem period 69;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	61283152	61283595	18	+	.	ID=1939;Type=deletion;Left=chr19:61283152-61283595;Right=chr19:61283842-61284107
chr19	CG	SV	61283842	61284107	18	+	.	ID=1939;Type=deletion;Left=chr19:61283152-61283595;Right=chr19:61283842-61284107
chr19	CG	SV	61509554	61510554	26	.	.	ID=1938;Type=deletion;Left=chr19:61509554-61509830+;Right=chr19:61510394-61510554+;Distance=840;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;Tandem period 84;RightRepeat=Self chain;Tandem period 84;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr19	CG	SV	61509554	61509830	26	+	.	ID=1938;Type=deletion;Left=chr19:61509554-61509830;Right=chr19:61510394-61510554
chr19	CG	SV	61510394	61510554	26	+	.	ID=1938;Type=deletion;Left=chr19:61509554-61509830;Right=chr19:61510394-61510554
chr19	CG	SV	61558270	61562175	60	.	.	ID=1937;Type=deletion;Left=chr19:61558270-61558816+;Right=chr19:61561735-61562175+;Distance=3465;DiscordantMatePairAlignments=60;LeftRepeat=Self chain;RightRepeat=L1PA10:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs72037353 (chr19:61558270-61561735);Frequency=0.12
chr19	CG	SV	61558270	61558816	60	+	.	ID=1937;Type=deletion;Left=chr19:61558270-61558816;Right=chr19:61561735-61562175
chr19	CG	SV	61561735	61562175	60	+	.	ID=1937;Type=deletion;Left=chr19:61558270-61558816;Right=chr19:61561735-61562175
chr20	CG	SV	1337146	1339242	71	.	.	ID=1936;Type=deletion;Left=chr20:1337146-1337617+;Right=chr20:1338817-1339242+;Distance=1671;DiscordantMatePairAlignments=71;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs66897164 (chr20:1337143-1338814);Frequency=0.94
chr20	CG	SV	1337146	1337617	71	+	.	ID=1936;Type=deletion;Left=chr20:1337146-1337617;Right=chr20:1338817-1339242
chr20	CG	SV	1338817	1339242	71	+	.	ID=1936;Type=deletion;Left=chr20:1337146-1337617;Right=chr20:1338817-1339242
chr20	CG	SV	1943501	1945940	44	.	.	ID=1935;Type=deletion;Left=chr20:1943501-1943981+;Right=chr20:1945532-1945940+;Distance=2031;DiscordantMatePairAlignments=44;LeftRepeat=L1MD2:LINE:L1;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr20	CG	SV	1943501	1943981	44	+	.	ID=1935;Type=deletion;Left=chr20:1943501-1943981;Right=chr20:1945532-1945940
chr20	CG	SV	1945532	1945940	44	+	.	ID=1935;Type=deletion;Left=chr20:1943501-1943981;Right=chr20:1945532-1945940
chr20	CG	SV	2164844	2165103	99	.	.	ID=320;Type=tandem-duplication;Left=chr20:2164844-2164983-;Right=chr20:2164969-2165103-;Distance=120;DiscordantMatePairAlignments=99;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr20	CG	SV	2164844	2164983	99	-	.	ID=320;Type=tandem-duplication;Left=chr20:2164844-2164983;Right=chr20:2164969-2165103
chr20	CG	SV	2164969	2165103	99	-	.	ID=320;Type=tandem-duplication;Left=chr20:2164844-2164983;Right=chr20:2164969-2165103
chr20	CG	SV	2307903	2309009	31	.	.	ID=1934;Type=deletion;Left=chr20:2307903-2308112+;Right=chr20:2308608-2309009+;Distance=705;DiscordantMatePairAlignments=31;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67473611 (chr20:2307903-2308608);Frequency=0.76
chr20	CG	SV	2307903	2308112	31	+	.	ID=1934;Type=deletion;Left=chr20:2307903-2308112;Right=chr20:2308608-2309009
chr20	CG	SV	2308608	2309009	31	+	.	ID=1934;Type=deletion;Left=chr20:2307903-2308112;Right=chr20:2308608-2309009
chr20	CG	SV	4879297	4920504	28	.	.	ID=1933;Type=deletion;Left=chr20:4879297-4879834+;Right=chr20:4919975-4920504+;Distance=40678;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=NM_005116:-;NM_203327:-;RightGenes=NM_005116:-;NM_203327:-;XRef=;Frequency=0.00
chr20	CG	SV	4879297	4879834	28	+	.	ID=1933;Type=deletion;Left=chr20:4879297-4879834;Right=chr20:4919975-4920504
chr20	CG	SV	4919975	4920504	28	+	.	ID=1933;Type=deletion;Left=chr20:4879297-4879834;Right=chr20:4919975-4920504
chr20	CG	SV	9973449	9976150	13	.	.	ID=1930;Type=deletion;Left=chr20:9973449-9973784+;Right=chr20:9975700-9976150+;Distance=2251;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=;LeftGenes=NM_022096:+;NM_198798:+;RightGenes=NM_022096:+;NM_198798:+;XRef=;Frequency=0.00
chr20	CG	SV	9973449	9973784	13	+	.	ID=1930;Type=deletion;Left=chr20:9973449-9973784;Right=chr20:9975700-9976150
chr20	CG	SV	9975700	9976150	13	+	.	ID=1930;Type=deletion;Left=chr20:9973449-9973784;Right=chr20:9975700-9976150
chr20	CG	SV	18152948	18157180	16	.	.	ID=252;Type=probable-inversion;Left=chr20:18152948-18153490-;Right=chr20:18157105-18157180+;Distance=3615;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr20	CG	SV	18152948	18153490	16	-	.	ID=252;Type=probable-inversion;Left=chr20:18152948-18153490;Right=chr20:18157105-18157180
chr20	CG	SV	18157105	18157180	16	-	.	ID=252;Type=probable-inversion;Left=chr20:18152948-18153490;Right=chr20:18157105-18157180
chr20	CG	SV	19009430	19010365	11	.	.	ID=1927;Type=deletion;Left=chr20:19009430-19009963+;Right=chr20:19009743-19010365+;Distance=313;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=MLT1A0:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs34277434 (chr20:19009430-19009743);Frequency=0.76
chr20	CG	SV	19009430	19009963	11	+	.	ID=1927;Type=deletion;Left=chr20:19009430-19009963;Right=chr20:19009743-19010365
chr20	CG	SV	19009743	19010365	11	+	.	ID=1927;Type=deletion;Left=chr20:19009430-19009963;Right=chr20:19009743-19010365
chr20	CG	SV	21234124	21237234	87	.	.	ID=1926;Type=deletion;Left=chr20:21234124-21234577+;Right=chr20:21236806-21237234+;Distance=2682;DiscordantMatePairAlignments=87;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_012255:+;RightGenes=NM_012255:+;XRef=rs67065922 (chr20:21234127-21236809);Frequency=0.88
chr20	CG	SV	21234124	21234577	87	+	.	ID=1926;Type=deletion;Left=chr20:21234124-21234577;Right=chr20:21236806-21237234
chr20	CG	SV	21236806	21237234	87	+	.	ID=1926;Type=deletion;Left=chr20:21234124-21234577;Right=chr20:21236806-21237234
chr20	CG	SV	24458297	24458672	17	.	.	ID=318;Type=tandem-duplication;Left=chr20:24458297-24458425-;Right=chr20:24458395-24458672-;Distance=247;DiscordantMatePairAlignments=17;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 42;RightRepeat=Self chain;LeftGenes=NM_024893:+;RightGenes=NM_024893:+;XRef=;Frequency=0.71
chr20	CG	SV	24458297	24458425	17	-	.	ID=318;Type=tandem-duplication;Left=chr20:24458297-24458425;Right=chr20:24458395-24458672
chr20	CG	SV	24458395	24458672	17	-	.	ID=318;Type=tandem-duplication;Left=chr20:24458297-24458425;Right=chr20:24458395-24458672
chr20	CG	SV	28252472	28255536	44	.	.	ID=1924;Type=deletion;Left=chr20:28252472-28252921+;Right=chr20:28255074-28255536+;Distance=2602;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr20	CG	SV	28252472	28252921	44	+	.	ID=1924;Type=deletion;Left=chr20:28252472-28252921;Right=chr20:28255074-28255536
chr20	CG	SV	28255074	28255536	44	+	.	ID=1924;Type=deletion;Left=chr20:28252472-28252921;Right=chr20:28255074-28255536
chr20	CG	SV	32279598	32283384	90	.	.	ID=1923;Type=deletion;Left=chr20:32279598-32280035+;Right=chr20:32282895-32283384+;Distance=3297;DiscordantMatePairAlignments=90;LeftRepeat=;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71190078 (chr20:32279599-32282896);Frequency=1.00
chr20	CG	SV	32279598	32280035	90	+	.	ID=1923;Type=deletion;Left=chr20:32279598-32280035;Right=chr20:32282895-32283384
chr20	CG	SV	32282895	32283384	90	+	.	ID=1923;Type=deletion;Left=chr20:32279598-32280035;Right=chr20:32282895-32283384
chr20	CG	SV	32705610	32708395	21	.	.	ID=1921;Type=deletion;Left=chr20:32705610-32706105+;Right=chr20:32708035-32708395+;Distance=2425;DiscordantMatePairAlignments=21;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_080476:-;RightGenes=NM_080476:-;XRef=rs67282265 (chr20:32705520-32707945);Frequency=0.59
chr20	CG	SV	32705610	32706105	21	+	.	ID=1921;Type=deletion;Left=chr20:32705610-32706105;Right=chr20:32708035-32708395
chr20	CG	SV	32708035	32708395	21	+	.	ID=1921;Type=deletion;Left=chr20:32705610-32706105;Right=chr20:32708035-32708395
chr20	CG	SV	41458026	41459616	87	.	.	ID=1917;Type=deletion;Left=chr20:41458026-41458472+;Right=chr20:41459224-41459616+;Distance=1198;DiscordantMatePairAlignments=87;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67207892 (chr20:41458026-41459224);Frequency=0.94
chr20	CG	SV	41458026	41458472	87	+	.	ID=1917;Type=deletion;Left=chr20:41458026-41458472;Right=chr20:41459224-41459616
chr20	CG	SV	41459224	41459616	87	+	.	ID=1917;Type=deletion;Left=chr20:41458026-41458472;Right=chr20:41459224-41459616
chr20	CG	SV	41758337	41759061	63	.	.	ID=315;Type=tandem-duplication;Left=chr20:41758337-41758557-;Right=chr20:41758596-41759061-;Distance=504;DiscordantMatePairAlignments=63;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_002466:+;RightGenes=NM_002466:+;XRef=;Frequency=1.00
chr20	CG	SV	41758337	41758557	63	-	.	ID=315;Type=tandem-duplication;Left=chr20:41758337-41758557;Right=chr20:41758596-41759061
chr20	CG	SV	41758596	41759061	63	-	.	ID=315;Type=tandem-duplication;Left=chr20:41758337-41758557;Right=chr20:41758596-41759061
chr20	CG	SV	43637478	43641199	41	.	.	ID=1906;Type=deletion;Left=chr20:43637478-43637862+;Right=chr20:43640716-43641199+;Distance=3238;DiscordantMatePairAlignments=41;LeftRepeat=L1M3:LINE:L1;RightRepeat=;LeftGenes=NM_130896:-;NM_181510:-;RightGenes=NM_130896:-;NM_181510:-;XRef=;Frequency=0.29
chr20	CG	SV	43637478	43637862	41	+	.	ID=1906;Type=deletion;Left=chr20:43637478-43637862;Right=chr20:43640716-43641199
chr20	CG	SV	43640716	43641199	41	+	.	ID=1906;Type=deletion;Left=chr20:43637478-43637862;Right=chr20:43640716-43641199
chr20	CG	SV	43968913	43969958	44	.	.	ID=1905;Type=deletion;Left=chr20:43968913-43969428+;Right=chr20:43969349-43969958+;Distance=436;DiscordantMatePairAlignments=44;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_006227:-;NM_182676:-;RightGenes=NM_006227:-;NM_182676:-;XRef=rs71981103 (chr20:43968778-43969214);Frequency=0.88
chr20	CG	SV	43968913	43969428	44	+	.	ID=1905;Type=deletion;Left=chr20:43968913-43969428;Right=chr20:43969349-43969958
chr20	CG	SV	43969349	43969958	44	+	.	ID=1905;Type=deletion;Left=chr20:43968913-43969428;Right=chr20:43969349-43969958
chr20	CG	SV	46808829	46811570	89	.	.	ID=1904;Type=deletion;Left=chr20:46808829-46809359+;Right=chr20:46811245-46811570+;Distance=2416;DiscordantMatePairAlignments=89;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_020820:-;RightGenes=NM_020820:-;XRef=;Frequency=0.00
chr20	CG	SV	46808829	46809359	89	+	.	ID=1904;Type=deletion;Left=chr20:46808829-46809359;Right=chr20:46811245-46811570
chr20	CG	SV	46811245	46811570	89	+	.	ID=1904;Type=deletion;Left=chr20:46808829-46809359;Right=chr20:46811245-46811570
chr20	CG	SV	52080480	52091838	35	.	.	ID=1902;Type=deletion;Left=chr20:52080480-52080966+;Right=chr20:52091417-52091838+;Distance=10937;DiscordantMatePairAlignments=35;LeftRepeat=;RightRepeat=L1MC4a:LINE:L1;LeftGenes=NM_003657:-;RightGenes=NM_003657:-;XRef=;Frequency=0.29
chr20	CG	SV	52080480	52080966	35	+	.	ID=1902;Type=deletion;Left=chr20:52080480-52080966;Right=chr20:52091417-52091838
chr20	CG	SV	52091417	52091838	35	+	.	ID=1902;Type=deletion;Left=chr20:52080480-52080966;Right=chr20:52091417-52091838
chr20	CG	SV	53868030	53874513	153	.	.	ID=1899;Type=deletion;Left=chr20:53868030-53868500+;Right=chr20:53874036-53874513+;Distance=6006;DiscordantMatePairAlignments=153;LeftRepeat=L1HS:LINE:L1;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs71190099 (chr20:53868030-53874036);Frequency=0.94
chr20	CG	SV	53868030	53868500	153	+	.	ID=1899;Type=deletion;Left=chr20:53868030-53868500;Right=chr20:53874036-53874513
chr20	CG	SV	53874036	53874513	153	+	.	ID=1899;Type=deletion;Left=chr20:53868030-53868500;Right=chr20:53874036-53874513
chr20	CG	SV	55512726	55514242	30	.	.	ID=1897;Type=deletion;Left=chr20:55512726-55513283+;Right=chr20:55514006-55514242+;Distance=1280;DiscordantMatePairAlignments=30;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_080618:-;RightGenes=NM_080618:-;XRef=;Frequency=0.18
chr20	CG	SV	55512726	55513283	30	+	.	ID=1897;Type=deletion;Left=chr20:55512726-55513283;Right=chr20:55514006-55514242
chr20	CG	SV	55514006	55514242	30	+	.	ID=1897;Type=deletion;Left=chr20:55512726-55513283;Right=chr20:55514006-55514242
chr20	CG	SV	57156850	57157708	40	.	.	ID=1895;Type=deletion;Left=chr20:57156850-57157311+;Right=chr20:57157184-57157708+;Distance=334;DiscordantMatePairAlignments=40;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35933436 (chr20:57156839-57157173);Frequency=0.12
chr20	CG	SV	57156850	57157311	40	+	.	ID=1895;Type=deletion;Left=chr20:57156850-57157311;Right=chr20:57157184-57157708
chr20	CG	SV	57157184	57157708	40	+	.	ID=1895;Type=deletion;Left=chr20:57156850-57157311;Right=chr20:57157184-57157708
chr20	CG	SV	58545071	58558974	62	.	.	ID=1894;Type=deletion;Left=chr20:58545071-58545612+;Right=chr20:58558265-58558974+;Distance=13194;DiscordantMatePairAlignments=62;LeftRepeat=AluSq:SINE:Alu;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr20	CG	SV	58545071	58545612	62	+	.	ID=1894;Type=deletion;Left=chr20:58545071-58545612;Right=chr20:58558265-58558974
chr20	CG	SV	58558265	58558974	62	+	.	ID=1894;Type=deletion;Left=chr20:58545071-58545612;Right=chr20:58558265-58558974
chr20	CG	SV	59337608	59337925	19	.	.	ID=269;Type=tandem-duplication;Left=chr20:59337608-59337734-;Right=chr20:59337757-59337925-;Distance=191;DiscordantMatePairAlignments=19;LeftRepeat=;RightRepeat=;LeftGenes=NM_001794:+;RightGenes=NM_001794:+;XRef=;Frequency=0.88
chr20	CG	SV	59337608	59337734	19	-	.	ID=269;Type=tandem-duplication;Left=chr20:59337608-59337734;Right=chr20:59337757-59337925
chr20	CG	SV	59337757	59337925	19	-	.	ID=269;Type=tandem-duplication;Left=chr20:59337608-59337734;Right=chr20:59337757-59337925
chr20	CG	SV	59407575	59408385	13	.	.	ID=1893;Type=deletion;Left=chr20:59407575-59408172+;Right=chr20:59407896-59408385+;Distance=321;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001794:+;RightGenes=NM_001794:+;XRef=rs66605952 (chr20:59407575-59407896);Frequency=0.82
chr20	CG	SV	59407575	59408172	13	+	.	ID=1893;Type=deletion;Left=chr20:59407575-59408172;Right=chr20:59407896-59408385
chr20	CG	SV	59407896	59408385	13	+	.	ID=1893;Type=deletion;Left=chr20:59407575-59408172;Right=chr20:59407896-59408385
chr20	CG	SV	61195143	61196624	199	.	.	ID=1892;Type=deletion;Left=chr20:61195143-61195674+;Right=chr20:61196042-61196624+;Distance=899;DiscordantMatePairAlignments=199;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67749901 (chr20:61195143-61196041);Frequency=1.00
chr20	CG	SV	61195143	61195674	199	+	.	ID=1892;Type=deletion;Left=chr20:61195143-61195674;Right=chr20:61196042-61196624
chr20	CG	SV	61196042	61196624	199	+	.	ID=1892;Type=deletion;Left=chr20:61195143-61195674;Right=chr20:61196042-61196624
chr20	CG	SV	61738061	61738907	12	.	.	ID=1891;Type=deletion;Left=chr20:61738061-61738470+;Right=chr20:61738572-61738907+;Distance=511;DiscordantMatePairAlignments=12;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr20	CG	SV	61738061	61738470	12	+	.	ID=1891;Type=deletion;Left=chr20:61738061-61738470;Right=chr20:61738572-61738907
chr20	CG	SV	61738572	61738907	12	+	.	ID=1891;Type=deletion;Left=chr20:61738061-61738470;Right=chr20:61738572-61738907
chr20	CG	SV	61862278	61863262	21	.	.	ID=1890;Type=deletion;Left=chr20:61862278-61862466+;Right=chr20:61862811-61863262+;Distance=533;DiscordantMatePairAlignments=21;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_025224:-;RightGenes=NM_025224:-;XRef=;Frequency=0.00
chr20	CG	SV	61862278	61862466	21	+	.	ID=1890;Type=deletion;Left=chr20:61862278-61862466;Right=chr20:61862811-61863262
chr20	CG	SV	61862811	61863262	21	+	.	ID=1890;Type=deletion;Left=chr20:61862278-61862466;Right=chr20:61862811-61863262
chr20	CG	SV	61981411	61982380	25	.	.	ID=225;Type=deletion;Left=chr20:61981411-61981759+;Right=chr20:61982251-61982380+;Distance=840;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;Tandem period 40;RightRepeat=Self chain;Tandem period 40;LeftGenes=NM_003288:+;NM_199359:+;NM_199360:+;NM_199361:+;NM_199362:+;NM_199363:+;RightGenes=NM_003288:+;NM_199359:+;NM_199360:+;NM_199361:+;NM_199362:+;NM_199363:+;XRef=;Frequency=0.10
chr20	CG	SV	61981411	61981759	25	+	.	ID=225;Type=deletion;Left=chr20:61981411-61981759;Right=chr20:61982251-61982380
chr20	CG	SV	61982251	61982380	25	+	.	ID=225;Type=deletion;Left=chr20:61981411-61981759;Right=chr20:61982251-61982380
chr20	CG	SV	62066701	62068502	134	.	.	ID=224;Type=deletion;Left=chr20:62066701-62067265+;Right=chr20:62067935-62068502+;Distance=1234;DiscordantMatePairAlignments=134;LeftRepeat=Self chain;Tandem period 43;RightRepeat=Self chain;Tandem period 43;LeftGenes=NM_020713:-;RightGenes=NM_020713:-;XRef=;Frequency=0.65
chr20	CG	SV	62066701	62067265	134	+	.	ID=224;Type=deletion;Left=chr20:62066701-62067265;Right=chr20:62067935-62068502
chr20	CG	SV	62067935	62068502	134	+	.	ID=224;Type=deletion;Left=chr20:62066701-62067265;Right=chr20:62067935-62068502
chr21	CG	SV	17534203	17535973	38	.	.	ID=208;Type=deletion;Left=chr21:17534203-17534676+;Right=chr21:17535507-17535973+;Distance=1304;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=L1PA7:LINE:L1;Tandem period 27;LeftGenes=;RightGenes=;XRef=rs71781010 (chr21:17534203-17535507);Frequency=0.76
chr21	CG	SV	17534203	17534676	38	+	.	ID=208;Type=deletion;Left=chr21:17534203-17534676;Right=chr21:17535507-17535973
chr21	CG	SV	17535507	17535973	38	+	.	ID=208;Type=deletion;Left=chr21:17534203-17534676;Right=chr21:17535507-17535973
chr21	CG	SV	18248710	18251487	21	.	.	ID=207;Type=deletion;Left=chr21:18248710-18249167+;Right=chr21:18251219-18251487+;Distance=2509;DiscordantMatePairAlignments=21;LeftRepeat=MLT2B1:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr21	CG	SV	18248710	18249167	21	+	.	ID=207;Type=deletion;Left=chr21:18248710-18249167;Right=chr21:18251219-18251487
chr21	CG	SV	18251219	18251487	21	+	.	ID=207;Type=deletion;Left=chr21:18248710-18249167;Right=chr21:18251219-18251487
chr21	CG	SV	23296667	23297722	77	.	.	ID=205;Type=deletion;Left=chr21:23296667-23297162+;Right=chr21:23297282-23297722+;Distance=615;DiscordantMatePairAlignments=77;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71775386 (chr21:23296667-23297282);Frequency=0.76
chr21	CG	SV	23296667	23297162	77	+	.	ID=205;Type=deletion;Left=chr21:23296667-23297162;Right=chr21:23297282-23297722
chr21	CG	SV	23297282	23297722	77	+	.	ID=205;Type=deletion;Left=chr21:23296667-23297162;Right=chr21:23297282-23297722
chr21	CG	SV	26296029	26296570	202	.	.	ID=1791;Type=inversion;Left=chr21:26296029-26296829+;Right=chr21:26296056-26296570-;Distance=541;DiscordantMatePairAlignments=202;LeftRepeat=;RightRepeat=;LeftGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;RightGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;XRef=;Frequency=1.00
chr21	CG	SV	26296029	26296829	202	+	.	ID=1791;Type=inversion;Left=chr21:26296029-26296829;Right=chr21:26296056-26296570
chr21	CG	SV	26296056	26296570	202	+	.	ID=1791;Type=inversion;Left=chr21:26296029-26296829;Right=chr21:26296056-26296570
chr21	CG	SV	26295516	26297067	343	.	.	ID=80;Type=inversion;Left=chr21:26295516-26296029-;Right=chr21:26296571-26297067+;Distance=542;DiscordantMatePairAlignments=343;LeftRepeat=;RightRepeat=;LeftGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;RightGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;XRef=;Frequency=1.00
chr21	CG	SV	26295516	26296029	343	-	.	ID=80;Type=inversion;Left=chr21:26295516-26296029;Right=chr21:26296571-26297067
chr21	CG	SV	26296571	26297067	343	-	.	ID=80;Type=inversion;Left=chr21:26295516-26296029;Right=chr21:26296571-26297067
chr21	CG	SV	26942210	26944245	135	.	.	ID=79;Type=complex;Left=chr21:26942210-26942553-;Right=chr21:26943597-26944245+;Distance=1044;DiscordantMatePairAlignments=135;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	26942210	26942553	135	-	.	ID=79;Type=complex;Left=chr21:26942210-26942553;Right=chr21:26943597-26944245
chr21	CG	SV	26943597	26944245	135	-	.	ID=79;Type=complex;Left=chr21:26942210-26942553;Right=chr21:26943597-26944245
chr21	CG	SV	26942555	26943501	82	.	.	ID=1790;Type=complex;Left=chr21:26942555-26943013+;Right=chr21:26943069-26943501-;Distance=946;DiscordantMatePairAlignments=82;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	26942555	26943013	82	+	.	ID=1790;Type=complex;Left=chr21:26942555-26943013;Right=chr21:26943069-26943501
chr21	CG	SV	26943069	26943501	82	+	.	ID=1790;Type=complex;Left=chr21:26942555-26943013;Right=chr21:26943069-26943501
chr21	CG	SV	29185622	29186297	36	.	.	ID=203;Type=deletion;Left=chr21:29185622-29186052+;Right=chr21:29186171-29186297+;Distance=549;DiscordantMatePairAlignments=36;LeftRepeat=L1MC1:LINE:L1;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66547158 (chr21:29185404-29185953);Frequency=1.00
chr21	CG	SV	29185622	29186052	36	+	.	ID=203;Type=deletion;Left=chr21:29185622-29186052;Right=chr21:29186171-29186297
chr21	CG	SV	29186171	29186297	36	+	.	ID=203;Type=deletion;Left=chr21:29185622-29186052;Right=chr21:29186171-29186297
chr21	CG	SV	29474096	29474916	26	.	.	ID=202;Type=deletion;Left=chr21:29474096-29474531+;Right=chr21:29474450-29474916+;Distance=354;DiscordantMatePairAlignments=26;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71197491 (chr21:29474096-29474450);Frequency=1.00
chr21	CG	SV	29474096	29474531	26	+	.	ID=202;Type=deletion;Left=chr21:29474096-29474531;Right=chr21:29474450-29474916
chr21	CG	SV	29474450	29474916	26	+	.	ID=202;Type=deletion;Left=chr21:29474096-29474531;Right=chr21:29474450-29474916
chr21	CG	SV	29523696	29524603	13	.	.	ID=201;Type=deletion;Left=chr21:29523696-29524248+;Right=chr21:29524036-29524603+;Distance=340;DiscordantMatePairAlignments=13;LeftRepeat=L3:LINE:CR1;RightRepeat=L3:LINE:CR1;LeftGenes=NR_027072:+;RightGenes=NR_027072:+;XRef=rs6147472 (chr21:29523696-29524036);Frequency=1.00
chr21	CG	SV	29523696	29524248	13	+	.	ID=201;Type=deletion;Left=chr21:29523696-29524248;Right=chr21:29524036-29524603
chr21	CG	SV	29524036	29524603	13	+	.	ID=201;Type=deletion;Left=chr21:29523696-29524248;Right=chr21:29524036-29524603
chr21	CG	SV	38403432	38403998	36	.	.	ID=199;Type=deletion;Left=chr21:38403432-38403981+;Right=chr21:38403802-38403998+;Distance=370;DiscordantMatePairAlignments=36;LeftRepeat=Self chain;Tandem period 370;RightRepeat=Self chain;Tandem period 370;LeftGenes=NM_005867:-;RightGenes=NM_005867:-;XRef=;Frequency=1.00
chr21	CG	SV	38403432	38403981	36	+	.	ID=199;Type=deletion;Left=chr21:38403432-38403981;Right=chr21:38403802-38403998
chr21	CG	SV	38403802	38403998	36	+	.	ID=199;Type=deletion;Left=chr21:38403432-38403981;Right=chr21:38403802-38403998
chr21	CG	SV	41833816	41834758	95	.	.	ID=193;Type=deletion;Left=chr21:41833816-41834346+;Right=chr21:41834266-41834758+;Distance=450;DiscordantMatePairAlignments=95;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr21	CG	SV	41833816	41834346	95	+	.	ID=193;Type=deletion;Left=chr21:41833816-41834346;Right=chr21:41834266-41834758
chr21	CG	SV	41834266	41834758	95	+	.	ID=193;Type=deletion;Left=chr21:41833816-41834346;Right=chr21:41834266-41834758
chr21	CG	SV	42099248	42100774	12	.	.	ID=191;Type=complex;Left=chr21:42099248-42099420+;Right=chr21:42100484-42100774+;Distance=1236;DiscordantMatePairAlignments=12;LeftRepeat=(CCA)n:Simple_repeat:Simple_repeat;Tandem CAC;Tandem period 15;RightRepeat=(CCA)n:Simple_repeat:Simple_repeat;LeftGenes=NM_001040424:-;NM_022115:-;RightGenes=NM_001040424:-;NM_022115:-;XRef=;Frequency=1.00
chr21	CG	SV	42099248	42099420	12	+	.	ID=191;Type=complex;Left=chr21:42099248-42099420;Right=chr21:42100484-42100774
chr21	CG	SV	42100484	42100774	12	+	.	ID=191;Type=complex;Left=chr21:42099248-42099420;Right=chr21:42100484-42100774
chr21	CG	SV	42099810	42100692	35	.	.	ID=190;Type=complex;Left=chr21:42099810-42100130+;Right=chr21:42100442-42100692+;Distance=632;DiscordantMatePairAlignments=35;LeftRepeat=(CCA)n:Simple_repeat:Simple_repeat;Tandem CAC;Tandem period 15;RightRepeat=(CCA)n:Simple_repeat:Simple_repeat;LeftGenes=NM_001040424:-;NM_022115:-;RightGenes=NM_001040424:-;NM_022115:-;XRef=;Frequency=1.00
chr21	CG	SV	42099810	42100130	35	+	.	ID=190;Type=complex;Left=chr21:42099810-42100130;Right=chr21:42100442-42100692
chr21	CG	SV	42100442	42100692	35	+	.	ID=190;Type=complex;Left=chr21:42099810-42100130;Right=chr21:42100442-42100692
chr21	CG	SV	42223190	42227083	507	.	.	ID=189;Type=deletion;Left=chr21:42223190-42223726+;Right=chr21:42226559-42227083+;Distance=3369;DiscordantMatePairAlignments=507;LeftRepeat=LTR36:LTR:ERV1;RightRepeat=;LeftGenes=NM_015500:-;RightGenes=NM_015500:-;XRef=rs72055785 (chr21:42223185-42226554);Frequency=0.41
chr21	CG	SV	42223190	42223726	507	+	.	ID=189;Type=deletion;Left=chr21:42223190-42223726;Right=chr21:42226559-42227083
chr21	CG	SV	42226559	42227083	507	+	.	ID=189;Type=deletion;Left=chr21:42223190-42223726;Right=chr21:42226559-42227083
chr21	CG	SV	43794796	43798408	463	.	.	ID=187;Type=deletion;Left=chr21:43794796-43795342+;Right=chr21:43797732-43798408+;Distance=2936;DiscordantMatePairAlignments=463;LeftRepeat=;RightRepeat=Tigger4(Zombi):DNA:MER2_type;LeftGenes=NM_007031:-;RightGenes=NM_007031:-;XRef=rs72438714 (chr21:43794796-43797732);Frequency=0.53
chr21	CG	SV	43794796	43795342	463	+	.	ID=187;Type=deletion;Left=chr21:43794796-43795342;Right=chr21:43797732-43798408
chr21	CG	SV	43797732	43798408	463	+	.	ID=187;Type=deletion;Left=chr21:43794796-43795342;Right=chr21:43797732-43798408
chr21	CG	SV	44443627	44445502	158	.	.	ID=186;Type=deletion;Left=chr21:44443627-44444126+;Right=chr21:44445149-44445502+;Distance=1522;DiscordantMatePairAlignments=158;LeftRepeat=AluSq:SINE:Alu;RightRepeat=MER65B-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr21	CG	SV	44443627	44444126	158	+	.	ID=186;Type=deletion;Left=chr21:44443627-44444126;Right=chr21:44445149-44445502
chr21	CG	SV	44445149	44445502	158	+	.	ID=186;Type=deletion;Left=chr21:44443627-44444126;Right=chr21:44445149-44445502
chr21	CG	SV	44663644	44664050	10	.	.	ID=263;Type=tandem-duplication;Left=chr21:44663644-44663834-;Right=chr21:44663980-44664050-;Distance=216;DiscordantMatePairAlignments=10;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GGT;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GGT;LeftGenes=NM_003307:+;RightGenes=NM_003307:+;XRef=;Frequency=0.53
chr21	CG	SV	44663644	44663834	10	-	.	ID=263;Type=tandem-duplication;Left=chr21:44663644-44663834;Right=chr21:44663980-44664050
chr21	CG	SV	44663980	44664050	10	-	.	ID=263;Type=tandem-duplication;Left=chr21:44663644-44663834;Right=chr21:44663980-44664050
chr21	CG	SV	45299287	45299463	135	.	.	ID=262;Type=tandem-duplication;Left=chr21:45299287-45299385-;Right=chr21:45299383-45299463-;Distance=78;DiscordantMatePairAlignments=135;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	45299287	45299385	135	-	.	ID=262;Type=tandem-duplication;Left=chr21:45299287-45299385;Right=chr21:45299383-45299463
chr21	CG	SV	45299383	45299463	135	-	.	ID=262;Type=tandem-duplication;Left=chr21:45299287-45299385;Right=chr21:45299383-45299463
chr21	CG	SV	46212457	46214581	12	.	.	ID=182;Type=deletion;Left=chr21:46212457-46212922+;Right=chr21:46214160-46214581+;Distance=1703;DiscordantMatePairAlignments=12;LeftRepeat=L1MC4a:LINE:L1;Self chain;RightRepeat=MLT1B:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=rs72238485 (chr21:46212457-46214160);Frequency=0.94
chr21	CG	SV	46212457	46212922	12	+	.	ID=182;Type=deletion;Left=chr21:46212457-46212922;Right=chr21:46214160-46214581
chr21	CG	SV	46214160	46214581	12	+	.	ID=182;Type=deletion;Left=chr21:46212457-46212922;Right=chr21:46214160-46214581
chr22	CG	SV	16437866	16440788	18	.	.	ID=177;Type=deletion;Left=chr22:16437866-16438230+;Right=chr22:16440572-16440788+;Distance=2706;DiscordantMatePairAlignments=18;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_031481:+;RightGenes=NM_031481:+;XRef=rs71187331 (chr22:16437770-16440477);Frequency=0.94
chr22	CG	SV	16437866	16438230	18	+	.	ID=177;Type=deletion;Left=chr22:16437866-16438230;Right=chr22:16440572-16440788
chr22	CG	SV	16440572	16440788	18	+	.	ID=177;Type=deletion;Left=chr22:16437866-16438230;Right=chr22:16440572-16440788
chr22	CG	SV	17951619	17953284	25	.	.	ID=174;Type=deletion;Left=chr22:17951619-17952166+;Right=chr22:17953102-17953284+;Distance=1483;DiscordantMatePairAlignments=25;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L1MA4A:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr22	CG	SV	17951619	17952166	25	+	.	ID=174;Type=deletion;Left=chr22:17951619-17952166;Right=chr22:17953102-17953284
chr22	CG	SV	17953102	17953284	25	+	.	ID=174;Type=deletion;Left=chr22:17951619-17952166;Right=chr22:17953102-17953284
chr22	CG	SV	21808555	21810026	113	.	.	ID=173;Type=deletion;Left=chr22:21808555-21808920+;Right=chr22:21809686-21810026+;Distance=1131;DiscordantMatePairAlignments=113;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_014433:-;RightGenes=NM_014433:-;XRef=rs66466474 (chr22:21808353-21809484);Frequency=0.41
chr22	CG	SV	21808555	21808920	113	+	.	ID=173;Type=deletion;Left=chr22:21808555-21808920;Right=chr22:21809686-21810026
chr22	CG	SV	21809686	21810026	113	+	.	ID=173;Type=deletion;Left=chr22:21808555-21808920;Right=chr22:21809686-21810026
chr22	CG	SV	22525949	22528982	12	.	.	ID=172;Type=deletion;Left=chr22:22525949-22526390+;Right=chr22:22528520-22528982+;Distance=2571;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67891020 (chr22:22525949-22528520);Frequency=1.00
chr22	CG	SV	22525949	22526390	12	+	.	ID=172;Type=deletion;Left=chr22:22525949-22526390;Right=chr22:22528520-22528982
chr22	CG	SV	22528520	22528982	12	+	.	ID=172;Type=deletion;Left=chr22:22525949-22526390;Right=chr22:22528520-22528982
chr22	CG	SV	25498076	25500491	139	.	.	ID=169;Type=deletion;Left=chr22:25498076-25498615+;Right=chr22:25499802-25500491+;Distance=1726;DiscordantMatePairAlignments=139;LeftRepeat=(TTTTA)n:Simple_repeat:Simple_repeat;Self chain;Tandem TTTTA;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67812002 (chr22:25498076-25499802);Frequency=1.00
chr22	CG	SV	25498076	25498615	139	+	.	ID=169;Type=deletion;Left=chr22:25498076-25498615;Right=chr22:25499802-25500491
chr22	CG	SV	25499802	25500491	139	+	.	ID=169;Type=deletion;Left=chr22:25498076-25498615;Right=chr22:25499802-25500491
chr22	CG	SV	28696099	28696970	20	.	.	ID=168;Type=deletion;Left=chr22:28696099-28696356+;Right=chr22:28696503-28696970+;Distance=404;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=AluJb:SINE:Alu;Tandem T;LeftGenes=NM_021090:+;NM_153050:+;NM_153051:+;RightGenes=NM_021090:+;NM_153050:+;NM_153051:+;XRef=;Frequency=0.00
chr22	CG	SV	28696099	28696356	20	+	.	ID=168;Type=deletion;Left=chr22:28696099-28696356;Right=chr22:28696503-28696970
chr22	CG	SV	28696503	28696970	20	+	.	ID=168;Type=deletion;Left=chr22:28696099-28696356;Right=chr22:28696503-28696970
chr22	CG	SV	29375468	29376777	47	.	.	ID=167;Type=deletion;Left=chr22:29375468-29375817+;Right=chr22:29376235-29376777+;Distance=767;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr22	CG	SV	29375468	29375817	47	+	.	ID=167;Type=deletion;Left=chr22:29375468-29375817;Right=chr22:29376235-29376777
chr22	CG	SV	29376235	29376777	47	+	.	ID=167;Type=deletion;Left=chr22:29375468-29375817;Right=chr22:29376235-29376777
chr22	CG	SV	31407268	31408454	11	.	.	ID=166;Type=deletion;Left=chr22:31407268-31407468+;Right=chr22:31408184-31408454+;Distance=916;DiscordantMatePairAlignments=11;LeftRepeat=MER20:DNA:MER1_type;RightRepeat=MER20:DNA:MER1_type;LeftGenes=NM_001135774:-;NM_003490:-;NM_133633:-;RightGenes=NM_001135774:-;NM_003490:-;NM_133633:-;XRef=;Frequency=0.47
chr22	CG	SV	31407268	31407468	11	+	.	ID=166;Type=deletion;Left=chr22:31407268-31407468;Right=chr22:31408184-31408454
chr22	CG	SV	31408184	31408454	11	+	.	ID=166;Type=deletion;Left=chr22:31407268-31407468;Right=chr22:31408184-31408454
chr22	CG	SV	33789001	33789849	15	.	.	ID=164;Type=deletion;Left=chr22:33789001-33789555+;Right=chr22:33789421-33789849+;Distance=420;DiscordantMatePairAlignments=15;LeftRepeat=MSTA:LTR:MaLR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66506111 (chr22:33789010-33789421);Frequency=0.41
chr22	CG	SV	33789001	33789555	15	+	.	ID=164;Type=deletion;Left=chr22:33789001-33789555;Right=chr22:33789421-33789849
chr22	CG	SV	33789421	33789849	15	+	.	ID=164;Type=deletion;Left=chr22:33789001-33789555;Right=chr22:33789421-33789849
chr22	CG	SV	33975166	33976413	19	.	.	ID=163;Type=deletion;Left=chr22:33975166-33975666+;Right=chr22:33976141-33976413+;Distance=975;DiscordantMatePairAlignments=19;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72164967 (chr22:33975164-33976139);Frequency=0.94
chr22	CG	SV	33975166	33975666	19	+	.	ID=163;Type=deletion;Left=chr22:33975166-33975666;Right=chr22:33976141-33976413
chr22	CG	SV	33976141	33976413	19	+	.	ID=163;Type=deletion;Left=chr22:33975166-33975666;Right=chr22:33976141-33976413
chr22	CG	SV	35473279	35478369	11	.	.	ID=162;Type=deletion;Left=chr22:35473279-35473742+;Right=chr22:35478005-35478369+;Distance=4726;DiscordantMatePairAlignments=11;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71819381 (chr22:35473093-35477819);Frequency=1.00
chr22	CG	SV	35473279	35473742	11	+	.	ID=162;Type=deletion;Left=chr22:35473279-35473742;Right=chr22:35478005-35478369
chr22	CG	SV	35478005	35478369	11	+	.	ID=162;Type=deletion;Left=chr22:35473279-35473742;Right=chr22:35478005-35478369
chr22	CG	SV	37624054	37629077	29	.	.	ID=160;Type=deletion;Left=chr22:37624054-37624539+;Right=chr22:37628634-37629077+;Distance=4580;DiscordantMatePairAlignments=29;LeftRepeat=L1MC4a:LINE:L1;Self chain;RightRepeat=LTR38-int:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs66483755 (chr22:37624054-37628634);Frequency=0.35
chr22	CG	SV	37624054	37624539	29	+	.	ID=160;Type=deletion;Left=chr22:37624054-37624539;Right=chr22:37628634-37629077
chr22	CG	SV	37628634	37629077	29	+	.	ID=160;Type=deletion;Left=chr22:37624054-37624539;Right=chr22:37628634-37629077
chr22	CG	SV	39124200	39125398	35	.	.	ID=159;Type=deletion;Left=chr22:39124200-39124678+;Right=chr22:39125219-39125398+;Distance=1019;DiscordantMatePairAlignments=35;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_015705:+;RightGenes=NM_015705:+;XRef=;Frequency=0.47
chr22	CG	SV	39124200	39124678	35	+	.	ID=159;Type=deletion;Left=chr22:39124200-39124678;Right=chr22:39125219-39125398
chr22	CG	SV	39125219	39125398	35	+	.	ID=159;Type=deletion;Left=chr22:39124200-39124678;Right=chr22:39125219-39125398
chr22	CG	SV	39470072	39472865	22	.	.	ID=158;Type=deletion;Left=chr22:39470072-39470471+;Right=chr22:39472593-39472865+;Distance=2521;DiscordantMatePairAlignments=22;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=LTR23:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr22	CG	SV	39470072	39470471	22	+	.	ID=158;Type=deletion;Left=chr22:39470072-39470471;Right=chr22:39472593-39472865
chr22	CG	SV	39472593	39472865	22	+	.	ID=158;Type=deletion;Left=chr22:39470072-39470471;Right=chr22:39472593-39472865
chr22	CG	SV	41431538	41432475	26	.	.	ID=157;Type=deletion;Left=chr22:41431538-41432089+;Right=chr22:41432290-41432475+;Distance=752;DiscordantMatePairAlignments=26;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_017436:-;RightGenes=NM_017436:-;XRef=;Frequency=0.76
chr22	CG	SV	41431538	41432089	26	+	.	ID=157;Type=deletion;Left=chr22:41431538-41432089;Right=chr22:41432290-41432475
chr22	CG	SV	41432290	41432475	26	+	.	ID=157;Type=deletion;Left=chr22:41431538-41432089;Right=chr22:41432290-41432475
chr22	CG	SV	42006785	42007970	87	.	.	ID=156;Type=deletion;Left=chr22:42006785-42007115+;Right=chr22:42007509-42007970+;Distance=724;DiscordantMatePairAlignments=87;LeftRepeat=Self chain;Tandem period 121;Tandem period 47;RightRepeat=C-rich:Low_complexity:Low_complexity;Self chain;Tandem period 121;Tandem period 13;Tandem period 47;LeftGenes=NM_173050:-;RightGenes=NM_173050:-;XRef=;Frequency=0.59
chr22	CG	SV	42006785	42007115	87	+	.	ID=156;Type=deletion;Left=chr22:42006785-42007115;Right=chr22:42007509-42007970
chr22	CG	SV	42007509	42007970	87	+	.	ID=156;Type=deletion;Left=chr22:42006785-42007115;Right=chr22:42007509-42007970
chr22	CG	SV	43631104	43632063	39	.	.	ID=154;Type=deletion;Left=chr22:43631104-43631713+;Right=chr22:43631770-43632063+;Distance=666;DiscordantMatePairAlignments=39;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSp:SINE:Alu;LeftGenes=NM_001017526:+;NM_181334:+;NM_181335:+;RightGenes=NM_001017526:+;NM_181334:+;NM_181335:+;XRef=rs72110256 (chr22:43631077-43631743);Frequency=0.29
chr22	CG	SV	43631104	43631713	39	+	.	ID=154;Type=deletion;Left=chr22:43631104-43631713;Right=chr22:43631770-43632063
chr22	CG	SV	43631770	43632063	39	+	.	ID=154;Type=deletion;Left=chr22:43631104-43631713;Right=chr22:43631770-43632063
chr22	CG	SV	43679048	43679825	10	.	.	ID=153;Type=deletion;Left=chr22:43679048-43679617+;Right=chr22:43679409-43679825+;Distance=361;DiscordantMatePairAlignments=10;LeftRepeat=L1MEe:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_001135862:-;NM_138415:-;RightGenes=NM_001135862:-;NM_138415:-;XRef=;Frequency=0.24
chr22	CG	SV	43679048	43679617	10	+	.	ID=153;Type=deletion;Left=chr22:43679048-43679617;Right=chr22:43679409-43679825
chr22	CG	SV	43679409	43679825	10	+	.	ID=153;Type=deletion;Left=chr22:43679048-43679617;Right=chr22:43679409-43679825
chr22	CG	SV	46075133	46076116	27	.	.	ID=151;Type=deletion;Left=chr22:46075133-46075632+;Right=chr22:46075529-46076116+;Distance=396;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67878846 (chr22:46075127-46075523);Frequency=0.53
chr22	CG	SV	46075133	46075632	27	+	.	ID=151;Type=deletion;Left=chr22:46075133-46075632;Right=chr22:46075529-46076116
chr22	CG	SV	46075529	46076116	27	+	.	ID=151;Type=deletion;Left=chr22:46075133-46075632;Right=chr22:46075529-46076116
chr22	CG	SV	47023887	47024719	18	.	.	ID=149;Type=deletion;Left=chr22:47023887-47024289+;Right=chr22:47024205-47024719+;Distance=318;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67189063 (chr22:47023887-47024205);Frequency=0.82
chr22	CG	SV	47023887	47024289	18	+	.	ID=149;Type=deletion;Left=chr22:47023887-47024289;Right=chr22:47024205-47024719
chr22	CG	SV	47024205	47024719	18	+	.	ID=149;Type=deletion;Left=chr22:47023887-47024289;Right=chr22:47024205-47024719
chr22	CG	SV	47450203	47451457	30	.	.	ID=147;Type=deletion;Left=chr22:47450203-47450713+;Right=chr22:47451023-47451457+;Distance=820;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;Tandem period 41;RightRepeat=Self chain;Tandem period 41;LeftGenes=NM_001082967:+;NM_015381:+;RightGenes=NM_001082967:+;NM_015381:+;XRef=rs71194978 (chr22:47450008-47450787);Frequency=0.35
chr22	CG	SV	47450203	47450713	30	+	.	ID=147;Type=deletion;Left=chr22:47450203-47450713;Right=chr22:47451023-47451457
chr22	CG	SV	47451023	47451457	30	+	.	ID=147;Type=deletion;Left=chr22:47450203-47450713;Right=chr22:47451023-47451457
chr22	CG	SV	48809296	48810347	13	.	.	ID=145;Type=deletion;Left=chr22:48809296-48809771+;Right=chr22:48809992-48810347+;Distance=696;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 22;Tandem period 43;RightRepeat=Self chain;Tandem period 22;Tandem period 43;LeftGenes=NM_001080447:-;RightGenes=NM_001080447:-;XRef=rs71198204 (chr22:48809248-48809685);Frequency=0.06
chr22	CG	SV	48809296	48809771	13	+	.	ID=145;Type=deletion;Left=chr22:48809296-48809771;Right=chr22:48809992-48810347
chr22	CG	SV	48809992	48810347	13	+	.	ID=145;Type=deletion;Left=chr22:48809296-48809771;Right=chr22:48809992-48810347
chrX	CG	SV	1158353	1158865	25	.	.	ID=248;Type=tandem-duplication;Left=chrX:1158353-1158621-;Right=chrX:1158703-1158865-;Distance=244;DiscordantMatePairAlignments=25;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chrX	CG	SV	1158353	1158621	25	-	.	ID=248;Type=tandem-duplication;Left=chrX:1158353-1158621;Right=chrX:1158703-1158865
chrX	CG	SV	1158703	1158865	25	-	.	ID=248;Type=tandem-duplication;Left=chrX:1158353-1158621;Right=chrX:1158703-1158865
chrX	CG	SV	1176109	1176732	13	.	.	ID=141;Type=deletion;Left=chrX:1176109-1176599+;Right=chrX:1176523-1176732+;Distance=414;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem period 138;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chrX	CG	SV	1176109	1176599	13	+	.	ID=141;Type=deletion;Left=chrX:1176109-1176599;Right=chrX:1176523-1176732
chrX	CG	SV	1176523	1176732	13	+	.	ID=141;Type=deletion;Left=chrX:1176109-1176599;Right=chrX:1176523-1176732
chrX	CG	SV	1871106	1872121	77	.	.	ID=136;Type=deletion;Left=chrX:1871106-1871522+;Right=chrX:1871705-1872121+;Distance=599;DiscordantMatePairAlignments=77;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs72117520 (chrX:1870931-1871530);Frequency=0.41
chrX	CG	SV	1871106	1871522	77	+	.	ID=136;Type=deletion;Left=chrX:1871106-1871522;Right=chrX:1871705-1872121
chrX	CG	SV	1871705	1872121	77	+	.	ID=136;Type=deletion;Left=chrX:1871106-1871522;Right=chrX:1871705-1872121
chrX	CG	SV	2302555	2305217	27	.	.	ID=135;Type=deletion;Left=chrX:2302555-2303118+;Right=chrX:2304812-2305217+;Distance=2257;DiscordantMatePairAlignments=27;LeftRepeat=AluSp:SINE:Alu;SegDup;Self chain;RightRepeat=AluSc:SINE:Alu;SegDup;Self chain;LeftGenes=NM_145177:-;RightGenes=NM_145177:-;XRef=;Frequency=0.18
chrX	CG	SV	2302555	2303118	27	+	.	ID=135;Type=deletion;Left=chrX:2302555-2303118;Right=chrX:2304812-2305217
chrX	CG	SV	2304812	2305217	27	+	.	ID=135;Type=deletion;Left=chrX:2302555-2303118;Right=chrX:2304812-2305217
chrX	CG	SV	11490411	13753865	34	.	.	ID=47;Type=probable-inversion;Left=chrX:11490411-11490871-;Right=chrX:13753354-13753865+;Distance=2262483;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_006125:-;NM_013427:-;RightGenes=NM_001001994:-;XRef=;Frequency=0.00
chrX	CG	SV	11490411	11490871	34	-	.	ID=47;Type=probable-inversion;Left=chrX:11490411-11490871;Right=chrX:13753354-13753865
chrX	CG	SV	13753354	13753865	34	-	.	ID=47;Type=probable-inversion;Left=chrX:11490411-11490871;Right=chrX:13753354-13753865
chrX	CG	SV	11863112	11869790	146	.	.	ID=133;Type=deletion;Left=chrX:11863112-11863623+;Right=chrX:11869362-11869790+;Distance=6250;DiscordantMatePairAlignments=146;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67708312 (chrX:11863106-11869356);Frequency=0.47
chrX	CG	SV	11863112	11863623	146	+	.	ID=133;Type=deletion;Left=chrX:11863112-11863623;Right=chrX:11869362-11869790
chrX	CG	SV	11869362	11869790	146	+	.	ID=133;Type=deletion;Left=chrX:11863112-11863623;Right=chrX:11869362-11869790
chrX	CG	SV	16337604	16338238	18	.	.	ID=132;Type=deletion;Left=chrX:16337604-16338142+;Right=chrX:16338137-16338238+;Distance=533;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	16337604	16338142	18	+	.	ID=132;Type=deletion;Left=chrX:16337604-16338142;Right=chrX:16338137-16338238
chrX	CG	SV	16338137	16338238	18	+	.	ID=132;Type=deletion;Left=chrX:16337604-16338142;Right=chrX:16338137-16338238
chrX	CG	SV	16445835	32139586	23	.	.	ID=245;Type=tandem-duplication;Left=chrX:16445835-16446293-;Right=chrX:32139215-32139586-;Distance=15693293;DiscordantMatePairAlignments=23;LeftRepeat=L1M1:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_000109:-;NM_004006:-;NM_004007:-;NM_004009:-;NM_004010:-;NM_004011:-;NM_004012:-;XRef=;Frequency=0.00
chrX	CG	SV	16445835	16446293	23	-	.	ID=245;Type=tandem-duplication;Left=chrX:16445835-16446293;Right=chrX:32139215-32139586
chrX	CG	SV	32139215	32139586	23	-	.	ID=245;Type=tandem-duplication;Left=chrX:16445835-16446293;Right=chrX:32139215-32139586
chrX	CG	SV	17430551	17431290	16	.	.	ID=131;Type=deletion;Left=chrX:17430551-17431135+;Right=chrX:17430866-17431290+;Distance=315;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_198270:+;RightGenes=NM_198270:+;XRef=rs66968754 (chrX:17430537-17430852);Frequency=0.88
chrX	CG	SV	17430551	17431135	16	+	.	ID=131;Type=deletion;Left=chrX:17430551-17431135;Right=chrX:17430866-17431290
chrX	CG	SV	17430866	17431290	16	+	.	ID=131;Type=deletion;Left=chrX:17430551-17431135;Right=chrX:17430866-17431290
chrX	CG	SV	34255556	64403828	27	.	.	ID=1222;Type=probable-inversion;Left=chrX:34255556-34255792+;Right=chrX:64403386-64403828-;Distance=30148272;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;Tigger4(Zombi):DNA:MER2_type;RightRepeat=L1M4:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	34255556	34255792	27	+	.	ID=1222;Type=probable-inversion;Left=chrX:34255556-34255792;Right=chrX:64403386-64403828
chrX	CG	SV	64403386	64403828	27	+	.	ID=1222;Type=probable-inversion;Left=chrX:34255556-34255792;Right=chrX:64403386-64403828
chrX	CG	SV	52902915	55695675	23	.	.	ID=243;Type=distal-duplication;Left=chrX:52902915-52903445-;Right=chrX:55695249-55695675-;Distance=2792230;DiscordantMatePairAlignments=23;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	52902915	52903445	23	-	.	ID=243;Type=distal-duplication;Left=chrX:52902915-52903445;Right=chrX:55695249-55695675
chrX	CG	SV	55695249	55695675	23	-	.	ID=243;Type=distal-duplication;Left=chrX:52902915-52903445;Right=chrX:55695249-55695675
chrX	CG	SV	52908831	55696086	16	.	.	ID=126;Type=distal-duplication;Left=chrX:52908831-52909286+;Right=chrX:55695822-55696086+;Distance=2786991;DiscordantMatePairAlignments=16;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_130776:-;NM_133179:-;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	52908831	52909286	16	+	.	ID=126;Type=distal-duplication;Left=chrX:52908831-52909286;Right=chrX:55695822-55696086
chrX	CG	SV	55695822	55696086	16	+	.	ID=126;Type=distal-duplication;Left=chrX:52908831-52909286;Right=chrX:55695822-55696086
chrX	CG	SV	55189474	55202389	42	.	.	ID=125;Type=deletion;Left=chrX:55189474-55189891+;Right=chrX:55202292-55202389+;Distance=12818;DiscordantMatePairAlignments=42;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001166699:-;NM_001166700:-;NM_001166701:-;NM_001166702:-;NM_001166703:-;NM_001166704:-;NM_138362:-;NR_030722:-;RightGenes=NM_001166699:-;NM_001166700:-;NM_001166701:-;NM_001166702:-;NM_001166703:-;NM_001166704:-;NM_138362:-;NR_030722:-;XRef=;Frequency=1.00
chrX	CG	SV	55189474	55189891	42	+	.	ID=125;Type=deletion;Left=chrX:55189474-55189891;Right=chrX:55202292-55202389
chrX	CG	SV	55202292	55202389	42	+	.	ID=125;Type=deletion;Left=chrX:55189474-55189891;Right=chrX:55202292-55202389
chrX	CG	SV	64475342	89728706	15	.	.	ID=238;Type=complex;Left=chrX:64475342-64475599-;Right=chrX:89728608-89728706-;Distance=25253107;DiscordantMatePairAlignments=15;LeftRepeat=L1P4:LINE:L1;Self chain;RightRepeat=L1PA16:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	64475342	64475599	15	-	.	ID=238;Type=complex;Left=chrX:64475342-64475599;Right=chrX:89728608-89728706
chrX	CG	SV	89728608	89728706	15	-	.	ID=238;Type=complex;Left=chrX:64475342-64475599;Right=chrX:89728608-89728706
chrX	CG	SV	64476116	89729501	21	.	.	ID=19;Type=complex;Left=chrX:64476116-64476577-;Right=chrX:89729120-89729501+;Distance=25252543;DiscordantMatePairAlignments=21;LeftRepeat=L1PA13:LINE:L1;Self chain;RightRepeat=L1PA16:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	64476116	64476577	21	-	.	ID=19;Type=complex;Left=chrX:64476116-64476577;Right=chrX:89729120-89729501
chrX	CG	SV	89729120	89729501	21	-	.	ID=19;Type=complex;Left=chrX:64476116-64476577;Right=chrX:89729120-89729501
chrX	CG	SV	64476582	89430477	20	.	.	ID=1216;Type=complex;Left=chrX:64476582-64477066+;Right=chrX:89430215-89430477-;Distance=24953895;DiscordantMatePairAlignments=20;LeftRepeat=L1PA13:LINE:L1;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	64476582	64477066	20	+	.	ID=1216;Type=complex;Left=chrX:64476582-64477066;Right=chrX:89430215-89430477
chrX	CG	SV	89430215	89430477	20	+	.	ID=1216;Type=complex;Left=chrX:64476582-64477066;Right=chrX:89430215-89430477
chrX	CG	SV	69363395	69363478	14	.	.	ID=1219;Type=probable-inversion;Left=chrX:69363395-69363576+;Right=chrX:69363396-69363478-;Distance=83;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chrX	CG	SV	69363395	69363576	14	+	.	ID=1219;Type=probable-inversion;Left=chrX:69363395-69363576;Right=chrX:69363396-69363478
chrX	CG	SV	69363396	69363478	14	+	.	ID=1219;Type=probable-inversion;Left=chrX:69363395-69363576;Right=chrX:69363396-69363478
chrX	CG	SV	74070808	74077169	24	.	.	ID=124;Type=deletion;Left=chrX:74070808-74071243+;Right=chrX:74076765-74077169+;Distance=5957;DiscordantMatePairAlignments=24;LeftRepeat=MIR:SINE:MIR;Self chain;RightRepeat=L1PA15:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	74070808	74071243	24	+	.	ID=124;Type=deletion;Left=chrX:74070808-74071243;Right=chrX:74076765-74077169
chrX	CG	SV	74076765	74077169	24	+	.	ID=124;Type=deletion;Left=chrX:74070808-74071243;Right=chrX:74076765-74077169
chrX	CG	SV	77583513	77584631	171	.	.	ID=122;Type=deletion;Left=chrX:77583513-77584011+;Right=chrX:77584111-77584631+;Distance=598;DiscordantMatePairAlignments=171;LeftRepeat=Self chain;RightRepeat=HUERS-P1:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	77583513	77584011	171	+	.	ID=122;Type=deletion;Left=chrX:77583513-77584011;Right=chrX:77584111-77584631
chrX	CG	SV	77584111	77584631	171	+	.	ID=122;Type=deletion;Left=chrX:77583513-77584011;Right=chrX:77584111-77584631
chrX	CG	SV	78808545	78810019	10	.	.	ID=1215;Type=complex;Left=chrX:78808545-78808988+;Right=chrX:78809883-78810019-;Distance=1474;DiscordantMatePairAlignments=10;LeftRepeat=L1PA16:LINE:L1;Self chain;RightRepeat=L1PA16:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	78808545	78808988	10	+	.	ID=1215;Type=complex;Left=chrX:78808545-78808988;Right=chrX:78809883-78810019
chrX	CG	SV	78809883	78810019	10	+	.	ID=1215;Type=complex;Left=chrX:78808545-78808988;Right=chrX:78809883-78810019
chrX	CG	SV	78808545	78812995	27	.	.	ID=121;Type=complex;Left=chrX:78808545-78808958+;Right=chrX:78812727-78812995+;Distance=4182;DiscordantMatePairAlignments=27;LeftRepeat=L1PA16:LINE:L1;Self chain;RightRepeat=L1MA1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chrX	CG	SV	78808545	78808958	27	+	.	ID=121;Type=complex;Left=chrX:78808545-78808958;Right=chrX:78812727-78812995
chrX	CG	SV	78812727	78812995	27	+	.	ID=121;Type=complex;Left=chrX:78808545-78808958;Right=chrX:78812727-78812995
chrX	CG	SV	78833104	78835992	14	.	.	ID=120;Type=deletion;Left=chrX:78833104-78833543+;Right=chrX:78835492-78835992+;Distance=2388;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=L1PA7:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs67757067 (chrX:78833104-78835491);Frequency=0.41
chrX	CG	SV	78833104	78833543	14	+	.	ID=120;Type=deletion;Left=chrX:78833104-78833543;Right=chrX:78835492-78835992
chrX	CG	SV	78835492	78835992	14	+	.	ID=120;Type=deletion;Left=chrX:78833104-78833543;Right=chrX:78835492-78835992
chrX	CG	SV	80929159	80930074	14	.	.	ID=119;Type=deletion;Left=chrX:80929159-80929487+;Right=chrX:80929739-80930074+;Distance=580;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;THE1B-int:LTR:MaLR;RightRepeat=Self chain;THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	80929159	80929487	14	+	.	ID=119;Type=deletion;Left=chrX:80929159-80929487;Right=chrX:80929739-80930074
chrX	CG	SV	80929739	80930074	14	+	.	ID=119;Type=deletion;Left=chrX:80929159-80929487;Right=chrX:80929739-80930074
chrX	CG	SV	81957906	81978585	50	.	.	ID=237;Type=tandem-duplication;Left=chrX:81957906-81958351-;Right=chrX:81978172-81978585-;Distance=20234;DiscordantMatePairAlignments=50;LeftRepeat=MLT1G1:LTR:MaLR;Self chain;RightRepeat=LTR29:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	81957906	81958351	50	-	.	ID=237;Type=tandem-duplication;Left=chrX:81957906-81958351;Right=chrX:81978172-81978585
chrX	CG	SV	81978172	81978585	50	-	.	ID=237;Type=tandem-duplication;Left=chrX:81957906-81958351;Right=chrX:81978172-81978585
chrX	CG	SV	85491835	85496822	13	.	.	ID=116;Type=deletion;Left=chrX:85491835-85492258+;Right=chrX:85496527-85496822+;Distance=4692;DiscordantMatePairAlignments=13;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=(CAAAA)n:Simple_repeat:Simple_repeat;Self chain;Tandem AATAA;LeftGenes=NM_001139514:+;NM_001139515:+;NM_053281:+;RightGenes=NM_001139514:+;NM_001139515:+;NM_053281:+;XRef=;Frequency=0.88
chrX	CG	SV	85491835	85492258	13	+	.	ID=116;Type=deletion;Left=chrX:85491835-85492258;Right=chrX:85496527-85496822
chrX	CG	SV	85496527	85496822	13	+	.	ID=116;Type=deletion;Left=chrX:85491835-85492258;Right=chrX:85496527-85496822
chrX	CG	SV	86165707	86167143	48	.	.	ID=115;Type=deletion;Left=chrX:86165707-86165996+;Right=chrX:86166792-86167143+;Distance=1085;DiscordantMatePairAlignments=48;LeftRepeat=L1P4:LINE:L1;Self chain;RightRepeat=(TA)n:Simple_repeat:Simple_repeat;Self chain;Tandem TA;Tandem period 11;Tandem period 9;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chrX	CG	SV	86165707	86165996	48	+	.	ID=115;Type=deletion;Left=chrX:86165707-86165996;Right=chrX:86166792-86167143
chrX	CG	SV	86166792	86167143	48	+	.	ID=115;Type=deletion;Left=chrX:86165707-86165996;Right=chrX:86166792-86167143
chrX	CG	SV	89465022	89467544	60	.	.	ID=113;Type=deletion;Left=chrX:89465022-89465321+;Right=chrX:89467036-89467544+;Distance=2014;DiscordantMatePairAlignments=60;LeftRepeat=MLT-int:LTR:MaLR;SegDup;Self chain;RightRepeat=L1MB3:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chrX	CG	SV	89465022	89465321	60	+	.	ID=113;Type=deletion;Left=chrX:89465022-89465321;Right=chrX:89467036-89467544
chrX	CG	SV	89467036	89467544	60	+	.	ID=113;Type=deletion;Left=chrX:89465022-89465321;Right=chrX:89467036-89467544
chrX	CG	SV	90170015	90171239	200	.	.	ID=112;Type=deletion;Left=chrX:90170015-90170596+;Right=chrX:90170744-90171239+;Distance=729;DiscordantMatePairAlignments=200;LeftRepeat=LTR9B:LTR:ERV1;SegDup;Self chain;RightRepeat=L1MA9:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chrX	CG	SV	90170015	90170596	200	+	.	ID=112;Type=deletion;Left=chrX:90170015-90170596;Right=chrX:90170744-90171239
chrX	CG	SV	90170744	90171239	200	+	.	ID=112;Type=deletion;Left=chrX:90170015-90170596;Right=chrX:90170744-90171239
chrX	CG	SV	94937503	94938578	52	.	.	ID=111;Type=deletion;Left=chrX:94937503-94938001+;Right=chrX:94938136-94938578+;Distance=633;DiscordantMatePairAlignments=52;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs72179039 (chrX:94937503-94938136);Frequency=0.88
chrX	CG	SV	94937503	94938001	52	+	.	ID=111;Type=deletion;Left=chrX:94937503-94938001;Right=chrX:94938136-94938578
chrX	CG	SV	94938136	94938578	52	+	.	ID=111;Type=deletion;Left=chrX:94937503-94938001;Right=chrX:94938136-94938578
chrX	CG	SV	114448780	114451050	11	.	.	ID=110;Type=deletion;Left=chrX:114448780-114449234+;Right=chrX:114450769-114451050+;Distance=1989;DiscordantMatePairAlignments=11;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L1MB2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chrX	CG	SV	114448780	114449234	11	+	.	ID=110;Type=deletion;Left=chrX:114448780-114449234;Right=chrX:114450769-114451050
chrX	CG	SV	114450769	114451050	11	+	.	ID=110;Type=deletion;Left=chrX:114448780-114449234;Right=chrX:114450769-114451050
chrX	CG	SV	117905654	117908307	40	.	.	ID=109;Type=deletion;Left=chrX:117905654-117906120+;Right=chrX:117907917-117908307+;Distance=2263;DiscordantMatePairAlignments=40;LeftRepeat=HERVP71A:LTR:ERV1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	117905654	117906120	40	+	.	ID=109;Type=deletion;Left=chrX:117905654-117906120;Right=chrX:117907917-117908307
chrX	CG	SV	117907917	117908307	40	+	.	ID=109;Type=deletion;Left=chrX:117905654-117906120;Right=chrX:117907917-117908307
chrX	CG	SV	118758268	118761104	12	.	.	ID=108;Type=deletion;Left=chrX:118758268-118758801+;Right=chrX:118760865-118761104+;Distance=2597;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	118758268	118758801	12	+	.	ID=108;Type=deletion;Left=chrX:118758268-118758801;Right=chrX:118760865-118761104
chrX	CG	SV	118760865	118761104	12	+	.	ID=108;Type=deletion;Left=chrX:118758268-118758801;Right=chrX:118760865-118761104
chrX	CG	SV	130833149	130836391	44	.	.	ID=105;Type=deletion;Left=chrX:130833149-130833554+;Right=chrX:130836311-130836391+;Distance=3162;DiscordantMatePairAlignments=44;LeftRepeat=AluSp:SINE:Alu;Self chain;RightRepeat=MER70-int:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chrX	CG	SV	130833149	130833554	44	+	.	ID=105;Type=deletion;Left=chrX:130833149-130833554;Right=chrX:130836311-130836391
chrX	CG	SV	130836311	130836391	44	+	.	ID=105;Type=deletion;Left=chrX:130833149-130833554;Right=chrX:130836311-130836391
chrX	CG	SV	131220928	131221964	20	.	.	ID=18;Type=probable-inversion;Left=chrX:131220928-131221272-;Right=chrX:131221878-131221964+;Distance=606;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chrX	CG	SV	131220928	131221272	20	-	.	ID=18;Type=probable-inversion;Left=chrX:131220928-131221272;Right=chrX:131221878-131221964
chrX	CG	SV	131221878	131221964	20	-	.	ID=18;Type=probable-inversion;Left=chrX:131220928-131221272;Right=chrX:131221878-131221964
chrX	CG	SV	134985665	134986625	18	.	.	ID=103;Type=deletion;Left=chrX:134985665-134986145+;Right=chrX:134985996-134986625+;Distance=331;DiscordantMatePairAlignments=18;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs67779071 (chrX:134985665-134985996);Frequency=1.00
chrX	CG	SV	134985665	134986145	18	+	.	ID=103;Type=deletion;Left=chrX:134985665-134986145;Right=chrX:134985996-134986625
chrX	CG	SV	134985996	134986625	18	+	.	ID=103;Type=deletion;Left=chrX:134985665-134986145;Right=chrX:134985996-134986625
chrX	CG	SV	138984838	139048568	10	.	.	ID=235;Type=tandem-duplication;Left=chrX:138984838-138985354-;Right=chrX:139048486-139048568-;Distance=63214;DiscordantMatePairAlignments=10;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	138984838	138985354	10	-	.	ID=235;Type=tandem-duplication;Left=chrX:138984838-138985354;Right=chrX:139048486-139048568
chrX	CG	SV	139048486	139048568	10	-	.	ID=235;Type=tandem-duplication;Left=chrX:138984838-138985354;Right=chrX:139048486-139048568
chrX	CG	SV	144229769	144232574	53	.	.	ID=101;Type=deletion;Left=chrX:144229769-144230321+;Right=chrX:144232200-144232574+;Distance=2431;DiscordantMatePairAlignments=53;LeftRepeat=L1M1:LINE:L1;RightRepeat=MSTA:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	144229769	144230321	53	+	.	ID=101;Type=deletion;Left=chrX:144229769-144230321;Right=chrX:144232200-144232574
chrX	CG	SV	144232200	144232574	53	+	.	ID=101;Type=deletion;Left=chrX:144229769-144230321;Right=chrX:144232200-144232574
chrX	CG	SV	147317388	147319225	172	.	.	ID=100;Type=deletion;Left=chrX:147317388-147317871+;Right=chrX:147318927-147319225+;Distance=1539;DiscordantMatePairAlignments=172;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs68151473 (chrX:147317390-147318927);Frequency=0.82
chrX	CG	SV	147317388	147317871	172	+	.	ID=100;Type=deletion;Left=chrX:147317388-147317871;Right=chrX:147318927-147319225
chrX	CG	SV	147318927	147319225	172	+	.	ID=100;Type=deletion;Left=chrX:147317388-147317871;Right=chrX:147318927-147319225
chrX	CG	SV	154139109	154140593	95	.	.	ID=99;Type=deletion;Left=chrX:154139109-154139574+;Right=chrX:154140140-154140593+;Distance=1031;DiscordantMatePairAlignments=95;LeftRepeat=;RightRepeat=CT-rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	154139109	154139574	95	+	.	ID=99;Type=deletion;Left=chrX:154139109-154139574;Right=chrX:154140140-154140593
chrX	CG	SV	154140140	154140593	95	+	.	ID=99;Type=deletion;Left=chrX:154139109-154139574;Right=chrX:154140140-154140593
chrX	CG	SV	154571654	154575351	15	.	.	ID=98;Type=deletion;Left=chrX:154571654-154572057+;Right=chrX:154574919-154575351+;Distance=3265;DiscordantMatePairAlignments=15;LeftRepeat=L1PA10:LINE:L1;RightRepeat=L1MA4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	154571654	154572057	15	+	.	ID=98;Type=deletion;Left=chrX:154571654-154572057;Right=chrX:154574919-154575351
chrX	CG	SV	154574919	154575351	15	+	.	ID=98;Type=deletion;Left=chrX:154571654-154572057;Right=chrX:154574919-154575351
chrX	CG	SV	154686021	154869899	20	.	.	ID=233;Type=tandem-duplication;Left=chrX:154686021-154686471-;Right=chrX:154869451-154869899-;Distance=183428;DiscordantMatePairAlignments=20;LeftRepeat=LTR14B:LTR:ERVK;Self chain;RightRepeat=LTR14B:LTR:ERVK;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chrX	CG	SV	154686021	154686471	20	-	.	ID=233;Type=tandem-duplication;Left=chrX:154686021-154686471;Right=chrX:154869451-154869899
chrX	CG	SV	154869451	154869899	20	-	.	ID=233;Type=tandem-duplication;Left=chrX:154686021-154686471;Right=chrX:154869451-154869899