chr1	CG	SV	815473	5649523	12	.	.	ID=3620;Type=complex;Left=chr1:815473-815629-;Right=chr1:5648702-5649523-;Distance=4833894;DiscordantMatePairAlignments=12;LeftRepeat=AluS:SINE:Alu;SegDup;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	815473	815629	12	-	.	ID=3620;Type=complex;Left=chr1:815473-815629;Right=chr1:5648702-5649523
chr1	CG	SV	5648702	5649523	12	-	.	ID=3620;Type=complex;Left=chr1:815473-815629;Right=chr1:5648702-5649523
chr1	CG	SV	816176	5651135	17	.	.	ID=3955;Type=complex;Left=chr1:816176-816522+;Right=chr1:5650765-5651135+;Distance=4834589;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 100;Tandem period 34;Tandem period 66;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	816176	816522	17	+	.	ID=3955;Type=complex;Left=chr1:816176-816522;Right=chr1:5650765-5651135
chr1	CG	SV	5650765	5651135	17	+	.	ID=3955;Type=complex;Left=chr1:816176-816522;Right=chr1:5650765-5651135
chr1	CG	SV	859334	860525	26	.	.	ID=3963;Type=deletion;Left=chr1:859334-859710+;Right=chr1:860205-860525+;Distance=871;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;Tandem period 28;RightRepeat=Self chain;LeftGenes=NM_152486;RightGenes=NM_152486;XRef=rs70949527 (chr1:859334-860175);Frequency=1.00
chr1	CG	SV	859334	859710	26	+	.	ID=3963;Type=deletion;Left=chr1:859334-859710;Right=chr1:860205-860525
chr1	CG	SV	860205	860525	26	+	.	ID=3963;Type=deletion;Left=chr1:859334-859710;Right=chr1:860205-860525
chr1	CG	SV	3408281	3408528	74	.	.	ID=3616;Type=tandem-duplication;Left=chr1:3408281-3408414-;Right=chr1:3408380-3408528-;Distance=114;DiscordantMatePairAlignments=74;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 40;LeftGenes=NM_001409;RightGenes=NM_001409;XRef=;Frequency=0.94
chr1	CG	SV	3408281	3408414	74	-	.	ID=3616;Type=tandem-duplication;Left=chr1:3408281-3408414;Right=chr1:3408380-3408528
chr1	CG	SV	3408380	3408528	74	-	.	ID=3616;Type=tandem-duplication;Left=chr1:3408281-3408414;Right=chr1:3408380-3408528
chr1	CG	SV	4055019	4055841	11	.	.	ID=3959;Type=deletion;Left=chr1:4055019-4055493+;Right=chr1:4055333-4055841+;Distance=314;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MLT1E1:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr1	CG	SV	4055019	4055493	11	+	.	ID=3959;Type=deletion;Left=chr1:4055019-4055493;Right=chr1:4055333-4055841
chr1	CG	SV	4055333	4055841	11	+	.	ID=3959;Type=deletion;Left=chr1:4055019-4055493;Right=chr1:4055333-4055841
chr1	CG	SV	5639887	5648757	12	.	.	ID=3954;Type=deletion;Left=chr1:5639887-5640093+;Right=chr1:5648482-5648757+;Distance=8595;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr1	CG	SV	5639887	5640093	12	+	.	ID=3954;Type=deletion;Left=chr1:5639887-5640093;Right=chr1:5648482-5648757
chr1	CG	SV	5648482	5648757	12	+	.	ID=3954;Type=deletion;Left=chr1:5639887-5640093;Right=chr1:5648482-5648757
chr1	CG	SV	5650402	5651224	112	.	.	ID=3953;Type=complex;Left=chr1:5650402-5650965+;Right=chr1:5650902-5651224+;Distance=500;DiscordantMatePairAlignments=112;LeftRepeat=Self chain;Tandem period 100;Tandem period 34;Tandem period 66;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	5650402	5650965	112	+	.	ID=3953;Type=complex;Left=chr1:5650402-5650965;Right=chr1:5650902-5651224
chr1	CG	SV	5650902	5651224	112	+	.	ID=3953;Type=complex;Left=chr1:5650402-5650965;Right=chr1:5650902-5651224
chr1	CG	SV	7847633	7848334	10	.	.	ID=3951;Type=deletion;Left=chr1:7847633-7847994+;Right=chr1:7848193-7848334+;Distance=560;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 112;Tandem period 169;Tandem period 57;RightRepeat=MLT1B:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr1	CG	SV	7847633	7847994	10	+	.	ID=3951;Type=deletion;Left=chr1:7847633-7847994;Right=chr1:7848193-7848334
chr1	CG	SV	7848193	7848334	10	+	.	ID=3951;Type=deletion;Left=chr1:7847633-7847994;Right=chr1:7848193-7848334
chr1	CG	SV	10405089	10406882	53	.	.	ID=3948;Type=deletion;Left=chr1:10405089-10405506+;Right=chr1:10406388-10406882+;Distance=1299;DiscordantMatePairAlignments=53;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	10405089	10405506	53	+	.	ID=3948;Type=deletion;Left=chr1:10405089-10405506;Right=chr1:10406388-10406882
chr1	CG	SV	10406388	10406882	53	+	.	ID=3948;Type=deletion;Left=chr1:10405089-10405506;Right=chr1:10406388-10406882
chr1	CG	SV	10982703	10985347	35	.	.	ID=3947;Type=deletion;Left=chr1:10982703-10982908+;Right=chr1:10984895-10985347+;Distance=2192;DiscordantMatePairAlignments=35;LeftRepeat=HAL1:LINE:L1;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	10982703	10982908	35	+	.	ID=3947;Type=deletion;Left=chr1:10982703-10982908;Right=chr1:10984895-10985347
chr1	CG	SV	10984895	10985347	35	+	.	ID=3947;Type=deletion;Left=chr1:10982703-10982908;Right=chr1:10984895-10985347
chr1	CG	SV	14309661	14311974	105	.	.	ID=3944;Type=deletion;Left=chr1:14309661-14310072+;Right=chr1:14311528-14311974+;Distance=1867;DiscordantMatePairAlignments=105;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr1	CG	SV	14309661	14310072	105	+	.	ID=3944;Type=deletion;Left=chr1:14309661-14310072;Right=chr1:14311528-14311974
chr1	CG	SV	14311528	14311974	105	+	.	ID=3944;Type=deletion;Left=chr1:14309661-14310072;Right=chr1:14311528-14311974
chr1	CG	SV	16923892	232979328	156	.	.	ID=1040;Type=probable-inversion;Left=chr1:16923892-16924326-;Right=chr1:232978810-232979328+;Distance=216054484;DiscordantMatePairAlignments=156;LeftRepeat=SegDup;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	16923892	16924326	156	-	.	ID=1040;Type=probable-inversion;Left=chr1:16923892-16924326;Right=chr1:232978810-232979328
chr1	CG	SV	232978810	232979328	156	-	.	ID=1040;Type=probable-inversion;Left=chr1:16923892-16924326;Right=chr1:232978810-232979328
chr1	CG	SV	17490318	17490645	20	+	.	ID=4053;Type=interchromosomal;Left=chr1:17490318-17490645+;Right=chr8:129908604-129908816-;Distance=;DiscordantMatePairAlignments=20;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=L1M4:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	129908604	129908816	20	+	.	ID=4053;Type=interchromosomal;Left=chr1:17490318-17490645+;Right=chr8:129908604-129908816-;Distance=;DiscordantMatePairAlignments=20;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=L1M4:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	19519782	19521084	11	.	.	ID=3943;Type=deletion;Left=chr1:19519782-19520282+;Right=chr1:19520933-19521084+;Distance=1151;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001040125;NM_001040126;NM_017765;RightGenes=NM_001040125;NM_001040126;NM_017765;XRef=;Frequency=0.00
chr1	CG	SV	19519782	19520282	11	+	.	ID=3943;Type=deletion;Left=chr1:19519782-19520282;Right=chr1:19520933-19521084
chr1	CG	SV	19520933	19521084	11	+	.	ID=3943;Type=deletion;Left=chr1:19519782-19520282;Right=chr1:19520933-19521084
chr1	CG	SV	20369781	20370827	50	.	.	ID=3942;Type=deletion;Left=chr1:20369781-20370139+;Right=chr1:20370329-20370827+;Distance=548;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=;LeftGenes=NM_001105572;RightGenes=NM_001105572;XRef=;Frequency=0.41
chr1	CG	SV	20369781	20370139	50	+	.	ID=3942;Type=deletion;Left=chr1:20369781-20370139;Right=chr1:20370329-20370827
chr1	CG	SV	20370329	20370827	50	+	.	ID=3942;Type=deletion;Left=chr1:20369781-20370139;Right=chr1:20370329-20370827
chr1	CG	SV	20804724	20805601	43	.	.	ID=3941;Type=deletion;Left=chr1:20804724-20805257+;Right=chr1:20805400-20805601+;Distance=676;DiscordantMatePairAlignments=43;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluYa5:SINE:Alu;LeftGenes=NM_001785;RightGenes=NM_001785;XRef=;Frequency=0.88
chr1	CG	SV	20804724	20805257	43	+	.	ID=3941;Type=deletion;Left=chr1:20804724-20805257;Right=chr1:20805400-20805601
chr1	CG	SV	20805400	20805601	43	+	.	ID=3941;Type=deletion;Left=chr1:20804724-20805257;Right=chr1:20805400-20805601
chr1	CG	SV	25031286	25034376	44	.	.	ID=3939;Type=deletion;Left=chr1:25031286-25031620+;Right=chr1:25034108-25034376+;Distance=2822;DiscordantMatePairAlignments=44;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=NM_013943;RightGenes=NM_013943;XRef=rs67502578 (chr1:25031274-25034096);Frequency=1.00
chr1	CG	SV	25031286	25031620	44	+	.	ID=3939;Type=deletion;Left=chr1:25031286-25031620;Right=chr1:25034108-25034376
chr1	CG	SV	25034108	25034376	44	+	.	ID=3939;Type=deletion;Left=chr1:25031286-25031620;Right=chr1:25034108-25034376
chr1	CG	SV	25074412	25076593	49	.	.	ID=3938;Type=deletion;Left=chr1:25074412-25074673+;Right=chr1:25076226-25076593+;Distance=1814;DiscordantMatePairAlignments=49;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	25074412	25074673	49	+	.	ID=3938;Type=deletion;Left=chr1:25074412-25074673;Right=chr1:25076226-25076593
chr1	CG	SV	25076226	25076593	49	+	.	ID=3938;Type=deletion;Left=chr1:25074412-25074673;Right=chr1:25076226-25076593
chr1	CG	SV	26140998	26142103	10	.	.	ID=3937;Type=deletion;Left=chr1:26140998-26141493+;Right=chr1:26141691-26142103+;Distance=693;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	26140998	26141493	10	+	.	ID=3937;Type=deletion;Left=chr1:26140998-26141493;Right=chr1:26141691-26142103
chr1	CG	SV	26141691	26142103	10	+	.	ID=3937;Type=deletion;Left=chr1:26140998-26141493;Right=chr1:26141691-26142103
chr1	CG	SV	30813245	30814750	49	.	.	ID=3935;Type=deletion;Left=chr1:30813245-30813678+;Right=chr1:30814260-30814750+;Distance=1015;DiscordantMatePairAlignments=49;LeftRepeat=Self chain;RightRepeat=MER65A-int:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr1	CG	SV	30813245	30813678	49	+	.	ID=3935;Type=deletion;Left=chr1:30813245-30813678;Right=chr1:30814260-30814750
chr1	CG	SV	30814260	30814750	49	+	.	ID=3935;Type=deletion;Left=chr1:30813245-30813678;Right=chr1:30814260-30814750
chr1	CG	SV	31743910	31744417	14	.	.	ID=1042;Type=probable-inversion;Left=chr1:31743910-31744128-;Right=chr1:31744235-31744417+;Distance=107;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	31743910	31744128	14	-	.	ID=1042;Type=probable-inversion;Left=chr1:31743910-31744128;Right=chr1:31744235-31744417
chr1	CG	SV	31744235	31744417	14	-	.	ID=1042;Type=probable-inversion;Left=chr1:31743910-31744128;Right=chr1:31744235-31744417
chr1	CG	SV	37719647	37722754	30	.	.	ID=4096;Type=distal-duplication;Left=chr1:37719647-37720087+;Right=chr1:37722640-37722754-;Distance=3107;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_025079;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	37719647	37720087	30	+	.	ID=4096;Type=distal-duplication;Left=chr1:37719647-37720087;Right=chr1:37722640-37722754
chr1	CG	SV	37722640	37722754	30	+	.	ID=4096;Type=distal-duplication;Left=chr1:37719647-37720087;Right=chr1:37722640-37722754
chr1	CG	SV	37719262	37722761	28	.	.	ID=1041;Type=distal-duplication;Left=chr1:37719262-37719674-;Right=chr1:37722638-37722761+;Distance=2964;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_025079;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	37719262	37719674	28	-	.	ID=1041;Type=distal-duplication;Left=chr1:37719262-37719674;Right=chr1:37722638-37722761
chr1	CG	SV	37722638	37722761	28	-	.	ID=1041;Type=distal-duplication;Left=chr1:37719262-37719674;Right=chr1:37722638-37722761
chr1	CG	SV	53366687	53368256	47	.	.	ID=3925;Type=complex;Left=chr1:53366687-53367150+;Right=chr1:53367538-53368256+;Distance=851;DiscordantMatePairAlignments=47;LeftRepeat=AluJo:SINE:Alu;RightRepeat=MIRb:SINE:MIR;LeftGenes=NM_006671;RightGenes=NM_006671;XRef=;Frequency=0.35
chr1	CG	SV	53366687	53367150	47	+	.	ID=3925;Type=complex;Left=chr1:53366687-53367150;Right=chr1:53367538-53368256
chr1	CG	SV	53367538	53368256	47	+	.	ID=3925;Type=complex;Left=chr1:53366687-53367150;Right=chr1:53367538-53368256
chr1	CG	SV	53366687	53368589	13	.	.	ID=3926;Type=complex;Left=chr1:53366687-53367099+;Right=chr1:53368191-53368589+;Distance=1504;DiscordantMatePairAlignments=13;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_006671;RightGenes=NM_006671;XRef=;Frequency=0.35
chr1	CG	SV	53366687	53367099	13	+	.	ID=3926;Type=complex;Left=chr1:53366687-53367099;Right=chr1:53368191-53368589
chr1	CG	SV	53368191	53368589	13	+	.	ID=3926;Type=complex;Left=chr1:53366687-53367099;Right=chr1:53368191-53368589
chr1	CG	SV	53367716	53368641	17	.	.	ID=3924;Type=complex;Left=chr1:53367716-53367886+;Right=chr1:53368194-53368641+;Distance=478;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=;LeftGenes=NM_006671;RightGenes=NM_006671;XRef=rs71671400 (chr1:53367713-53368191);Frequency=0.35
chr1	CG	SV	53367716	53367886	17	+	.	ID=3924;Type=complex;Left=chr1:53367716-53367886;Right=chr1:53368194-53368641
chr1	CG	SV	53368194	53368641	17	+	.	ID=3924;Type=complex;Left=chr1:53367716-53367886;Right=chr1:53368194-53368641
chr1	CG	SV	56603711	56607926	57	.	.	ID=3922;Type=deletion;Left=chr1:56603711-56604102+;Right=chr1:56607566-56607926+;Distance=3855;DiscordantMatePairAlignments=57;LeftRepeat=;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr1	CG	SV	56603711	56604102	57	+	.	ID=3922;Type=deletion;Left=chr1:56603711-56604102;Right=chr1:56607566-56607926
chr1	CG	SV	56607566	56607926	57	+	.	ID=3922;Type=deletion;Left=chr1:56603711-56604102;Right=chr1:56607566-56607926
chr1	CG	SV	56768307	56768934	79	.	.	ID=1224;Type=tandem-duplication;Left=chr1:56768307-56768620-;Right=chr1:56768587-56768934-;Distance=314;DiscordantMatePairAlignments=79;LeftRepeat=;RightRepeat=;LeftGenes=NM_003713;NM_177414;RightGenes=NM_003713;NM_177414;XRef=;Frequency=0.71
chr1	CG	SV	56768307	56768620	79	-	.	ID=1224;Type=tandem-duplication;Left=chr1:56768307-56768620;Right=chr1:56768587-56768934
chr1	CG	SV	56768587	56768934	79	-	.	ID=1224;Type=tandem-duplication;Left=chr1:56768307-56768620;Right=chr1:56768587-56768934
chr1	CG	SV	58516501	58517788	106	.	.	ID=3919;Type=deletion;Left=chr1:58516501-58517024+;Right=chr1:58517414-58517788+;Distance=913;DiscordantMatePairAlignments=106;LeftRepeat=THE1D:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67857551 (chr1:58516497-58517410);Frequency=1.00
chr1	CG	SV	58516501	58517024	106	+	.	ID=3919;Type=deletion;Left=chr1:58516501-58517024;Right=chr1:58517414-58517788
chr1	CG	SV	58517414	58517788	106	+	.	ID=3919;Type=deletion;Left=chr1:58516501-58517024;Right=chr1:58517414-58517788
chr1	CG	SV	59815718	59820955	63	.	.	ID=3918;Type=deletion;Left=chr1:59815718-59816193+;Right=chr1:59820365-59820955+;Distance=4647;DiscordantMatePairAlignments=63;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=NM_001113411;NM_018291;RightGenes=NM_001113411;NM_018291;XRef=;Frequency=0.00
chr1	CG	SV	59815718	59816193	63	+	.	ID=3918;Type=deletion;Left=chr1:59815718-59816193;Right=chr1:59820365-59820955
chr1	CG	SV	59820365	59820955	63	+	.	ID=3918;Type=deletion;Left=chr1:59815718-59816193;Right=chr1:59820365-59820955
chr1	CG	SV	61060448	61060923	25	.	.	ID=1223;Type=tandem-duplication;Left=chr1:61060448-61060683-;Right=chr1:61060667-61060923-;Distance=240;DiscordantMatePairAlignments=25;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr1	CG	SV	61060448	61060683	25	-	.	ID=1223;Type=tandem-duplication;Left=chr1:61060448-61060683;Right=chr1:61060667-61060923
chr1	CG	SV	61060667	61060923	25	-	.	ID=1223;Type=tandem-duplication;Left=chr1:61060448-61060683;Right=chr1:61060667-61060923
chr1	CG	SV	61855451	61856706	147	.	.	ID=3916;Type=deletion;Left=chr1:61855451-61855951+;Right=chr1:61856295-61856706+;Distance=844;DiscordantMatePairAlignments=147;LeftRepeat=MLT1K:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67174777 (chr1:61855445-61856289);Frequency=0.65
chr1	CG	SV	61855451	61855951	147	+	.	ID=3916;Type=deletion;Left=chr1:61855451-61855951;Right=chr1:61856295-61856706
chr1	CG	SV	61856295	61856706	147	+	.	ID=3916;Type=deletion;Left=chr1:61855451-61855951;Right=chr1:61856295-61856706
chr1	CG	SV	62163190	62164000	11	.	.	ID=3915;Type=deletion;Left=chr1:62163190-62163753+;Right=chr1:62163539-62164000+;Distance=349;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_176877;RightGenes=NM_176877;XRef=rs6143236 (chr1:62163174-62163523);Frequency=1.00
chr1	CG	SV	62163190	62163753	11	+	.	ID=3915;Type=deletion;Left=chr1:62163190-62163753;Right=chr1:62163539-62164000
chr1	CG	SV	62163539	62164000	11	+	.	ID=3915;Type=deletion;Left=chr1:62163190-62163753;Right=chr1:62163539-62164000
chr1	CG	SV	67780773	67781740	31	.	.	ID=3909;Type=deletion;Left=chr1:67780773-67781336+;Right=chr1:67781630-67781740+;Distance=857;DiscordantMatePairAlignments=31;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	67780773	67781336	31	+	.	ID=3909;Type=deletion;Left=chr1:67780773-67781336;Right=chr1:67781630-67781740
chr1	CG	SV	67781630	67781740	31	+	.	ID=3909;Type=deletion;Left=chr1:67780773-67781336;Right=chr1:67781630-67781740
chr1	CG	SV	72538912	72585027	70	.	.	ID=3906;Type=deletion;Left=chr1:72538912-72539444+;Right=chr1:72584428-72585027+;Distance=45516;DiscordantMatePairAlignments=70;LeftRepeat=;RightRepeat=MLT1E3:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	72538912	72539444	70	+	.	ID=3906;Type=deletion;Left=chr1:72538912-72539444;Right=chr1:72584428-72585027
chr1	CG	SV	72584428	72585027	70	+	.	ID=3906;Type=deletion;Left=chr1:72538912-72539444;Right=chr1:72584428-72585027
chr1	CG	SV	74757117	74758273	30	.	.	ID=3904;Type=deletion;Left=chr1:74757117-74757648+;Right=chr1:74757851-74758273+;Distance=734;DiscordantMatePairAlignments=30;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001112808;NM_015978;RightGenes=NM_001112808;NM_015978;XRef=;Frequency=0.10
chr1	CG	SV	74757117	74757648	30	+	.	ID=3904;Type=deletion;Left=chr1:74757117-74757648;Right=chr1:74757851-74758273
chr1	CG	SV	74757851	74758273	30	+	.	ID=3904;Type=deletion;Left=chr1:74757117-74757648;Right=chr1:74757851-74758273
chr1	CG	SV	81177354	81183959	69	.	.	ID=3901;Type=deletion;Left=chr1:81177354-81177808+;Right=chr1:81183545-81183959+;Distance=6191;DiscordantMatePairAlignments=69;LeftRepeat=MSTD:LTR:MaLR;RightRepeat=MSTD:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	81177354	81177808	69	+	.	ID=3901;Type=deletion;Left=chr1:81177354-81177808;Right=chr1:81183545-81183959
chr1	CG	SV	81183545	81183959	69	+	.	ID=3901;Type=deletion;Left=chr1:81177354-81177808;Right=chr1:81183545-81183959
chr1	CG	SV	84290518	84297640	116	.	.	ID=3900;Type=deletion;Left=chr1:84290518-84290958+;Right=chr1:84297222-84297640+;Distance=6704;DiscordantMatePairAlignments=116;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71759540 (chr1:84290527-84297231);Frequency=1.00
chr1	CG	SV	84290518	84290958	116	+	.	ID=3900;Type=deletion;Left=chr1:84290518-84290958;Right=chr1:84297222-84297640
chr1	CG	SV	84297222	84297640	116	+	.	ID=3900;Type=deletion;Left=chr1:84290518-84290958;Right=chr1:84297222-84297640
chr1	CG	SV	86453319	86456053	28	.	.	ID=3897;Type=deletion;Left=chr1:86453319-86453751+;Right=chr1:86455617-86456053+;Distance=2298;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	86453319	86453751	28	+	.	ID=3897;Type=deletion;Left=chr1:86453319-86453751;Right=chr1:86455617-86456053
chr1	CG	SV	86455617	86456053	28	+	.	ID=3897;Type=deletion;Left=chr1:86453319-86453751;Right=chr1:86455617-86456053
chr1	CG	SV	86513553	86514713	21	.	.	ID=3896;Type=deletion;Left=chr1:86513553-86513965+;Right=chr1:86514285-86514713+;Distance=732;DiscordantMatePairAlignments=21;LeftRepeat=L1M1:LINE:L1;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs70959283 (chr1:86513574-86514291);Frequency=0.82
chr1	CG	SV	86513553	86513965	21	+	.	ID=3896;Type=deletion;Left=chr1:86513553-86513965;Right=chr1:86514285-86514713
chr1	CG	SV	86514285	86514713	21	+	.	ID=3896;Type=deletion;Left=chr1:86513553-86513965;Right=chr1:86514285-86514713
chr1	CG	SV	87296126	87297528	12	.	.	ID=3895;Type=deletion;Left=chr1:87296126-87296564+;Right=chr1:87297334-87297528+;Distance=1208;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_001134492;NM_012262;RightGenes=NM_001134492;NM_012262;XRef=;Frequency=0.00
chr1	CG	SV	87296126	87296564	12	+	.	ID=3895;Type=deletion;Left=chr1:87296126-87296564;Right=chr1:87297334-87297528
chr1	CG	SV	87297334	87297528	12	+	.	ID=3895;Type=deletion;Left=chr1:87296126-87296564;Right=chr1:87297334-87297528
chr1	CG	SV	92004651	92006396	11	.	.	ID=3893;Type=deletion;Left=chr1:92004651-92005213+;Right=chr1:92005923-92006396+;Distance=1272;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=;LeftGenes=NM_003243;RightGenes=NM_003243;XRef=;Frequency=0.53
chr1	CG	SV	92004651	92005213	11	+	.	ID=3893;Type=deletion;Left=chr1:92004651-92005213;Right=chr1:92005923-92006396
chr1	CG	SV	92005923	92006396	11	+	.	ID=3893;Type=deletion;Left=chr1:92004651-92005213;Right=chr1:92005923-92006396
chr1	CG	SV	104471199	104472036	14	.	.	ID=3890;Type=deletion;Left=chr1:104471199-104471640+;Right=chr1:104471695-104472036+;Distance=496;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 248;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr1	CG	SV	104471199	104471640	14	+	.	ID=3890;Type=deletion;Left=chr1:104471199-104471640;Right=chr1:104471695-104472036
chr1	CG	SV	104471695	104472036	14	+	.	ID=3890;Type=deletion;Left=chr1:104471199-104471640;Right=chr1:104471695-104472036
chr1	CG	SV	105056556	105058026	42	.	.	ID=3888;Type=deletion;Left=chr1:105056556-105056935+;Right=chr1:105057712-105058026+;Distance=1156;DiscordantMatePairAlignments=42;LeftRepeat=(CATATA)n:Simple_repeat:Simple_repeat;Tandem AT;Tandem ATATAC;Tandem period 8;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	105056556	105056935	42	+	.	ID=3888;Type=deletion;Left=chr1:105056556-105056935;Right=chr1:105057712-105058026
chr1	CG	SV	105057712	105058026	42	+	.	ID=3888;Type=deletion;Left=chr1:105056556-105056935;Right=chr1:105057712-105058026
chr1	CG	SV	114447404	114456364	17	.	.	ID=1036;Type=distal-duplication;Left=chr1:114447404-114447477-;Right=chr1:114455894-114456364+;Distance=8417;DiscordantMatePairAlignments=17;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_205848;RightGenes=NM_205848;XRef=;Frequency=0.76
chr1	CG	SV	114447404	114447477	17	-	.	ID=1036;Type=distal-duplication;Left=chr1:114447404-114447477;Right=chr1:114455894-114456364
chr1	CG	SV	114455894	114456364	17	-	.	ID=1036;Type=distal-duplication;Left=chr1:114447404-114447477;Right=chr1:114455894-114456364
chr1	CG	SV	114447553	114455872	17	.	.	ID=4092;Type=distal-duplication;Left=chr1:114447553-114447634+;Right=chr1:114455189-114455872-;Distance=8319;DiscordantMatePairAlignments=17;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_205848;RightGenes=NM_205848;XRef=;Frequency=0.76
chr1	CG	SV	114447553	114447634	17	+	.	ID=4092;Type=distal-duplication;Left=chr1:114447553-114447634;Right=chr1:114455189-114455872
chr1	CG	SV	114455189	114455872	17	+	.	ID=4092;Type=distal-duplication;Left=chr1:114447553-114447634;Right=chr1:114455189-114455872
chr1	CG	SV	143605646	143606833	16	.	.	ID=3879;Type=deletion;Left=chr1:143605646-143606084+;Right=chr1:143606642-143606833+;Distance=996;DiscordantMatePairAlignments=16;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_001002811;NM_001002812;NM_014644;RightGenes=NM_001002811;NM_001002812;NM_014644;XRef=rs68115952 (chr1:143605449-143606445);Frequency=1.00
chr1	CG	SV	143605646	143606084	16	+	.	ID=3879;Type=deletion;Left=chr1:143605646-143606084;Right=chr1:143606642-143606833
chr1	CG	SV	143606642	143606833	16	+	.	ID=3879;Type=deletion;Left=chr1:143605646-143606084;Right=chr1:143606642-143606833
chr1	CG	SV	143738103	143738870	12	.	.	ID=3876;Type=deletion;Left=chr1:143738103-143738653+;Right=chr1:143738426-143738870+;Distance=323;DiscordantMatePairAlignments=12;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_022359;RightGenes=NM_022359;XRef=rs67897961 (chr1:143738086-143738409);Frequency=1.00
chr1	CG	SV	143738103	143738653	12	+	.	ID=3876;Type=deletion;Left=chr1:143738103-143738653;Right=chr1:143738426-143738870
chr1	CG	SV	143738426	143738870	12	+	.	ID=3876;Type=deletion;Left=chr1:143738103-143738653;Right=chr1:143738426-143738870
chr1	CG	SV	143804305	143808952	356	.	.	ID=3875;Type=deletion;Left=chr1:143804305-143804937+;Right=chr1:143808440-143808952+;Distance=4135;DiscordantMatePairAlignments=356;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_004892;XRef=rs67330508 (chr1:143804305-143808439);Frequency=1.00
chr1	CG	SV	143804305	143804937	356	+	.	ID=3875;Type=deletion;Left=chr1:143804305-143804937;Right=chr1:143808440-143808952
chr1	CG	SV	143808440	143808952	356	+	.	ID=3875;Type=deletion;Left=chr1:143804305-143804937;Right=chr1:143808440-143808952
chr1	CG	SV	153926383	153931547	14	.	.	ID=3872;Type=deletion;Left=chr1:153926383-153926834+;Right=chr1:153931088-153931547+;Distance=4705;DiscordantMatePairAlignments=14;LeftRepeat=SegDup;Self chain;RightRepeat=HERVKC4:LTR:ERVK;Self chain;LeftGenes=NM_004632;NM_033657;RightGenes=NM_004632;NM_033657;XRef=rs67308115 (chr1:153926383-153931088);Frequency=0.00
chr1	CG	SV	153926383	153926834	14	+	.	ID=3872;Type=deletion;Left=chr1:153926383-153926834;Right=chr1:153931088-153931547
chr1	CG	SV	153931088	153931547	14	+	.	ID=3872;Type=deletion;Left=chr1:153926383-153926834;Right=chr1:153931088-153931547
chr1	CG	SV	154793339	154796038	98	.	.	ID=3871;Type=deletion;Left=chr1:154793339-154793882+;Right=chr1:154795570-154796038+;Distance=2231;DiscordantMatePairAlignments=98;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_178229;RightGenes=NM_178229;XRef=rs68110015 (chr1:154793347-154795578);Frequency=1.00
chr1	CG	SV	154793339	154793882	98	+	.	ID=3871;Type=deletion;Left=chr1:154793339-154793882;Right=chr1:154795570-154796038
chr1	CG	SV	154795570	154796038	98	+	.	ID=3871;Type=deletion;Left=chr1:154793339-154793882;Right=chr1:154795570-154796038
chr1	CG	SV	157134157	157137037	11	.	.	ID=3866;Type=deletion;Left=chr1:157134157-157134551+;Right=chr1:157136604-157137037+;Distance=2447;DiscordantMatePairAlignments=11;LeftRepeat=L1MA9:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71810370 (chr1:157134157-157136608);Frequency=1.00
chr1	CG	SV	157134157	157134551	11	+	.	ID=3866;Type=deletion;Left=chr1:157134157-157134551;Right=chr1:157136604-157137037
chr1	CG	SV	157136604	157137037	11	+	.	ID=3866;Type=deletion;Left=chr1:157134157-157134551;Right=chr1:157136604-157137037
chr1	CG	SV	157915332	157916549	56	.	.	ID=3865;Type=deletion;Left=chr1:157915332-157915742+;Right=chr1:157916282-157916549+;Distance=950;DiscordantMatePairAlignments=56;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67706473 (chr1:157915331-157916281);Frequency=0.88
chr1	CG	SV	157915332	157915742	56	+	.	ID=3865;Type=deletion;Left=chr1:157915332-157915742;Right=chr1:157916282-157916549
chr1	CG	SV	157916282	157916549	56	+	.	ID=3865;Type=deletion;Left=chr1:157915332-157915742;Right=chr1:157916282-157916549
chr1	CG	SV	166291198	166292824	60	.	.	ID=3864;Type=deletion;Left=chr1:166291198-166291524+;Right=chr1:166292371-166292824+;Distance=1173;DiscordantMatePairAlignments=60;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_001017977;NM_018442;RightGenes=NM_001017977;NM_018442;XRef=rs70942833 (chr1:166291198-166292371);Frequency=0.82
chr1	CG	SV	166291198	166291524	60	+	.	ID=3864;Type=deletion;Left=chr1:166291198-166291524;Right=chr1:166292371-166292824
chr1	CG	SV	166292371	166292824	60	+	.	ID=3864;Type=deletion;Left=chr1:166291198-166291524;Right=chr1:166292371-166292824
chr1	CG	SV	169675547	169678915	38	.	.	ID=3863;Type=deletion;Left=chr1:169675547-169676014+;Right=chr1:169678629-169678915+;Distance=3082;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	169675547	169676014	38	+	.	ID=3863;Type=deletion;Left=chr1:169675547-169676014;Right=chr1:169678629-169678915
chr1	CG	SV	169678629	169678915	38	+	.	ID=3863;Type=deletion;Left=chr1:169675547-169676014;Right=chr1:169678629-169678915
chr1	CG	SV	175654759	175655191	16	.	.	ID=1214;Type=tandem-duplication;Left=chr1:175654759-175654988-;Right=chr1:175655023-175655191-;Distance=203;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	175654759	175654988	16	-	.	ID=1214;Type=tandem-duplication;Left=chr1:175654759-175654988;Right=chr1:175655023-175655191
chr1	CG	SV	175655023	175655191	16	-	.	ID=1214;Type=tandem-duplication;Left=chr1:175654759-175654988;Right=chr1:175655023-175655191
chr1	CG	SV	177873911	177875074	114	.	.	ID=3861;Type=deletion;Left=chr1:177873911-177874348+;Right=chr1:177874682-177875074+;Distance=771;DiscordantMatePairAlignments=114;LeftRepeat=;RightRepeat=MLT1J:LTR:MaLR;LeftGenes=NM_173533;RightGenes=NM_173533;XRef=;Frequency=0.59
chr1	CG	SV	177873911	177874348	114	+	.	ID=3861;Type=deletion;Left=chr1:177873911-177874348;Right=chr1:177874682-177875074
chr1	CG	SV	177874682	177875074	114	+	.	ID=3861;Type=deletion;Left=chr1:177873911-177874348;Right=chr1:177874682-177875074
chr1	CG	SV	183081351	183087848	130	.	.	ID=3857;Type=deletion;Left=chr1:183081351-183081830+;Right=chr1:183087407-183087848+;Distance=6056;DiscordantMatePairAlignments=130;LeftRepeat=FLAM_C:SINE:Alu;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=NM_052966;RightGenes=NM_052966;XRef=rs67214927 (chr1:183081351-183087407);Frequency=0.59
chr1	CG	SV	183081351	183081830	130	+	.	ID=3857;Type=deletion;Left=chr1:183081351-183081830;Right=chr1:183087407-183087848
chr1	CG	SV	183087407	183087848	130	+	.	ID=3857;Type=deletion;Left=chr1:183081351-183081830;Right=chr1:183087407-183087848
chr1	CG	SV	184050337	184052394	90	.	.	ID=3830;Type=deletion;Left=chr1:184050337-184050786+;Right=chr1:184051922-184052394+;Distance=1585;DiscordantMatePairAlignments=90;LeftRepeat=;RightRepeat=;LeftGenes=NM_031935;RightGenes=NM_031935;XRef=;Frequency=0.06
chr1	CG	SV	184050337	184050786	90	+	.	ID=3830;Type=deletion;Left=chr1:184050337-184050786;Right=chr1:184051922-184052394
chr1	CG	SV	184051922	184052394	90	+	.	ID=3830;Type=deletion;Left=chr1:184050337-184050786;Right=chr1:184051922-184052394
chr1	CG	SV	185731451	185733350	41	.	.	ID=4070;Type=complex;Left=chr1:185731451-185731905+;Right=chr1:185733102-185733350-;Distance=1899;DiscordantMatePairAlignments=41;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185731451	185731905	41	+	.	ID=4070;Type=complex;Left=chr1:185731451-185731905;Right=chr1:185733102-185733350
chr1	CG	SV	185733102	185733350	41	+	.	ID=4070;Type=complex;Left=chr1:185731451-185731905;Right=chr1:185733102-185733350
chr1	CG	SV	185731451	185733542	19	.	.	ID=3829;Type=complex;Left=chr1:185731451-185731758+;Right=chr1:185733348-185733542+;Distance=1897;DiscordantMatePairAlignments=19;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185731451	185731758	19	+	.	ID=3829;Type=complex;Left=chr1:185731451-185731758;Right=chr1:185733348-185733542
chr1	CG	SV	185733348	185733542	19	+	.	ID=3829;Type=complex;Left=chr1:185731451-185731758;Right=chr1:185733348-185733542
chr1	CG	SV	185732850	185733854	83	.	.	ID=1030;Type=complex;Left=chr1:185732850-185733098-;Right=chr1:185733355-185733854+;Distance=257;DiscordantMatePairAlignments=83;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185732850	185733098	83	-	.	ID=1030;Type=complex;Left=chr1:185732850-185733098;Right=chr1:185733355-185733854
chr1	CG	SV	185733355	185733854	83	-	.	ID=1030;Type=complex;Left=chr1:185732850-185733098;Right=chr1:185733355-185733854
chr1	CG	SV	186806079	186807353	121	.	.	ID=3828;Type=deletion;Left=chr1:186806079-186806491+;Right=chr1:186806854-186807353+;Distance=775;DiscordantMatePairAlignments=121;LeftRepeat=L1MB7:LINE:L1;RightRepeat=L1MCa:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67158349 (chr1:186806079-186806854);Frequency=1.00
chr1	CG	SV	186806079	186806491	121	+	.	ID=3828;Type=deletion;Left=chr1:186806079-186806491;Right=chr1:186806854-186807353
chr1	CG	SV	186806854	186807353	121	+	.	ID=3828;Type=deletion;Left=chr1:186806079-186806491;Right=chr1:186806854-186807353
chr1	CG	SV	195767133	195770549	149	.	.	ID=3824;Type=deletion;Left=chr1:195767133-195767679+;Right=chr1:195769896-195770549+;Distance=2763;DiscordantMatePairAlignments=149;LeftRepeat=;RightRepeat=L1HS:LINE:L1;LeftGenes=NM_001142795;RightGenes=NM_001142795;XRef=rs68001128 (chr1:195767143-195769906);Frequency=1.00
chr1	CG	SV	195767133	195767679	149	+	.	ID=3824;Type=deletion;Left=chr1:195767133-195767679;Right=chr1:195769896-195770549
chr1	CG	SV	195769896	195770549	149	+	.	ID=3824;Type=deletion;Left=chr1:195767133-195767679;Right=chr1:195769896-195770549
chr1	CG	SV	196571279	196577197	40	.	.	ID=3823;Type=deletion;Left=chr1:196571279-196571698+;Right=chr1:196576904-196577197+;Distance=5625;DiscordantMatePairAlignments=40;LeftRepeat=L1PA12:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr1	CG	SV	196571279	196571698	40	+	.	ID=3823;Type=deletion;Left=chr1:196571279-196571698;Right=chr1:196576904-196577197
chr1	CG	SV	196576904	196577197	40	+	.	ID=3823;Type=deletion;Left=chr1:196571279-196571698;Right=chr1:196576904-196577197
chr1	CG	SV	197705352	197707290	51	.	.	ID=3822;Type=deletion;Left=chr1:197705352-197705809+;Right=chr1:197706859-197707290+;Distance=1507;DiscordantMatePairAlignments=51;LeftRepeat=MLT1A1:LTR:MaLR;RightRepeat=MLT1A1:LTR:MaLR;Tandem A;LeftGenes=;RightGenes=;XRef=rs67023442 (chr1:197705349-197706856);Frequency=1.00
chr1	CG	SV	197705352	197705809	51	+	.	ID=3822;Type=deletion;Left=chr1:197705352-197705809;Right=chr1:197706859-197707290
chr1	CG	SV	197706859	197707290	51	+	.	ID=3822;Type=deletion;Left=chr1:197705352-197705809;Right=chr1:197706859-197707290
chr1	CG	SV	205608641	205612713	77	.	.	ID=3820;Type=deletion;Left=chr1:205608641-205609039+;Right=chr1:205612242-205612713+;Distance=3601;DiscordantMatePairAlignments=77;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66713152 (chr1:205608586-205612187);Frequency=0.59
chr1	CG	SV	205608641	205609039	77	+	.	ID=3820;Type=deletion;Left=chr1:205608641-205609039;Right=chr1:205612242-205612713
chr1	CG	SV	205612242	205612713	77	+	.	ID=3820;Type=deletion;Left=chr1:205608641-205609039;Right=chr1:205612242-205612713
chr1	CG	SV	208001337	208002698	75	.	.	ID=1203;Type=distal-duplication;Left=chr1:208001337-208001630-;Right=chr1:208002211-208002698-;Distance=1068;DiscordantMatePairAlignments=75;LeftRepeat=;RightRepeat=;LeftGenes=NM_025228;RightGenes=NM_025228;XRef=;Frequency=0.35
chr1	CG	SV	208001337	208001630	75	-	.	ID=1203;Type=distal-duplication;Left=chr1:208001337-208001630;Right=chr1:208002211-208002698
chr1	CG	SV	208002211	208002698	75	-	.	ID=1203;Type=distal-duplication;Left=chr1:208001337-208001630;Right=chr1:208002211-208002698
chr1	CG	SV	208001961	208003170	112	.	.	ID=3819;Type=distal-duplication;Left=chr1:208001961-208002294+;Right=chr1:208002702-208003170+;Distance=741;DiscordantMatePairAlignments=112;LeftRepeat=;RightRepeat=;LeftGenes=NM_025228;RightGenes=NM_025228;XRef=;Frequency=0.41
chr1	CG	SV	208001961	208002294	112	+	.	ID=3819;Type=distal-duplication;Left=chr1:208001961-208002294;Right=chr1:208002702-208003170
chr1	CG	SV	208002702	208003170	112	+	.	ID=3819;Type=distal-duplication;Left=chr1:208001961-208002294;Right=chr1:208002702-208003170
chr1	CG	SV	208144678	208153100	66	.	.	ID=3818;Type=deletion;Left=chr1:208144678-208145088+;Right=chr1:208152600-208153100+;Distance=7922;DiscordantMatePairAlignments=66;LeftRepeat=;RightRepeat=HERVL:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs72202560 (chr1:208144684-208152600);Frequency=0.53
chr1	CG	SV	208144678	208145088	66	+	.	ID=3818;Type=deletion;Left=chr1:208144678-208145088;Right=chr1:208152600-208153100
chr1	CG	SV	208152600	208153100	66	+	.	ID=3818;Type=deletion;Left=chr1:208144678-208145088;Right=chr1:208152600-208153100
chr1	CG	SV	210537776	210539784	148	.	.	ID=3816;Type=deletion;Left=chr1:210537776-210538185+;Right=chr1:210539257-210539784+;Distance=1481;DiscordantMatePairAlignments=148;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_006243;RightGenes=NM_006243;XRef=rs67798000 (chr1:210537776-210539257);Frequency=0.88
chr1	CG	SV	210537776	210538185	148	+	.	ID=3816;Type=deletion;Left=chr1:210537776-210538185;Right=chr1:210539257-210539784
chr1	CG	SV	210539257	210539784	148	+	.	ID=3816;Type=deletion;Left=chr1:210537776-210538185;Right=chr1:210539257-210539784
chr1	CG	SV	216484536	216488797	46	.	.	ID=3815;Type=deletion;Left=chr1:216484536-216485022+;Right=chr1:216488221-216488797+;Distance=3685;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	216484536	216485022	46	+	.	ID=3815;Type=deletion;Left=chr1:216484536-216485022;Right=chr1:216488221-216488797
chr1	CG	SV	216488221	216488797	46	+	.	ID=3815;Type=deletion;Left=chr1:216484536-216485022;Right=chr1:216488221-216488797
chr1	CG	SV	222313740	222314643	71	.	.	ID=3813;Type=deletion;Left=chr1:222313740-222314232+;Right=chr1:222314216-222314643+;Distance=476;DiscordantMatePairAlignments=71;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67408596 (chr1:222313740-222314216);Frequency=1.00
chr1	CG	SV	222313740	222314232	71	+	.	ID=3813;Type=deletion;Left=chr1:222313740-222314232;Right=chr1:222314216-222314643
chr1	CG	SV	222314216	222314643	71	+	.	ID=3813;Type=deletion;Left=chr1:222313740-222314232;Right=chr1:222314216-222314643
chr1	CG	SV	227879160	227887893	39	.	.	ID=3808;Type=deletion;Left=chr1:227879160-227879450+;Right=chr1:227887463-227887893+;Distance=8303;DiscordantMatePairAlignments=39;LeftRepeat=;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66826980 (chr1:227879160-227887463);Frequency=0.47
chr1	CG	SV	227879160	227879450	39	+	.	ID=3808;Type=deletion;Left=chr1:227879160-227879450;Right=chr1:227887463-227887893
chr1	CG	SV	227887463	227887893	39	+	.	ID=3808;Type=deletion;Left=chr1:227879160-227879450;Right=chr1:227887463-227887893
chr1	CG	SV	228199263	228200842	50	.	.	ID=3807;Type=deletion;Left=chr1:228199263-228199771+;Right=chr1:228200501-228200842+;Distance=1238;DiscordantMatePairAlignments=50;LeftRepeat=AluSc:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr1	CG	SV	228199263	228199771	50	+	.	ID=3807;Type=deletion;Left=chr1:228199263-228199771;Right=chr1:228200501-228200842
chr1	CG	SV	228200501	228200842	50	+	.	ID=3807;Type=deletion;Left=chr1:228199263-228199771;Right=chr1:228200501-228200842
chr1	CG	SV	234615726	234618311	17	.	.	ID=3802;Type=deletion;Left=chr1:234615726-234616109+;Right=chr1:234617969-234618311+;Distance=2243;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67414199 (chr1:234615726-234617969);Frequency=1.00
chr1	CG	SV	234615726	234616109	17	+	.	ID=3802;Type=deletion;Left=chr1:234615726-234616109;Right=chr1:234617969-234618311
chr1	CG	SV	234617969	234618311	17	+	.	ID=3802;Type=deletion;Left=chr1:234615726-234616109;Right=chr1:234617969-234618311
chr1	CG	SV	235620093	235622531	31	.	.	ID=4068;Type=distal-duplication;Left=chr1:235620093-235620540+;Right=chr1:235622405-235622531-;Distance=2438;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=;LeftGenes=NM_001035;RightGenes=NM_001035;XRef=;Frequency=0.00
chr1	CG	SV	235620093	235620540	31	+	.	ID=4068;Type=distal-duplication;Left=chr1:235620093-235620540;Right=chr1:235622405-235622531
chr1	CG	SV	235622405	235622531	31	+	.	ID=4068;Type=distal-duplication;Left=chr1:235620093-235620540;Right=chr1:235622405-235622531
chr1	CG	SV	235619649	235622534	31	.	.	ID=1019;Type=distal-duplication;Left=chr1:235619649-235620101-;Right=chr1:235622414-235622534+;Distance=2313;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=;LeftGenes=NM_001035;RightGenes=NM_001035;XRef=;Frequency=0.00
chr1	CG	SV	235619649	235620101	31	-	.	ID=1019;Type=distal-duplication;Left=chr1:235619649-235620101;Right=chr1:235622414-235622534
chr1	CG	SV	235622414	235622534	31	-	.	ID=1019;Type=distal-duplication;Left=chr1:235619649-235620101;Right=chr1:235622414-235622534
chr1	CG	SV	235632731	235632827	11	.	.	ID=4067;Type=probable-inversion;Left=chr1:235632731-235633125+;Right=chr1:235632730-235632827-;Distance=96;DiscordantMatePairAlignments=11;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_001035;RightGenes=NM_001035;XRef=;Frequency=0.94
chr1	CG	SV	235632731	235633125	11	+	.	ID=4067;Type=probable-inversion;Left=chr1:235632731-235633125;Right=chr1:235632730-235632827
chr1	CG	SV	235632730	235632827	11	+	.	ID=4067;Type=probable-inversion;Left=chr1:235632731-235633125;Right=chr1:235632730-235632827
chr1	CG	SV	236918945	236920233	34	.	.	ID=3801;Type=deletion;Left=chr1:236918945-236919232+;Right=chr1:236919888-236920233+;Distance=943;DiscordantMatePairAlignments=34;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr1	CG	SV	236918945	236919232	34	+	.	ID=3801;Type=deletion;Left=chr1:236918945-236919232;Right=chr1:236919888-236920233
chr1	CG	SV	236919888	236920233	34	+	.	ID=3801;Type=deletion;Left=chr1:236918945-236919232;Right=chr1:236919888-236920233
chr1	CG	SV	238182285	238183750	85	.	.	ID=1017;Type=distal-duplication;Left=chr1:238182285-238182639-;Right=chr1:238183306-238183750+;Distance=667;DiscordantMatePairAlignments=85;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.25
chr1	CG	SV	238182285	238182639	85	-	.	ID=1017;Type=distal-duplication;Left=chr1:238182285-238182639;Right=chr1:238183306-238183750
chr1	CG	SV	238183306	238183750	85	-	.	ID=1017;Type=distal-duplication;Left=chr1:238182285-238182639;Right=chr1:238183306-238183750
chr1	CG	SV	238183002	238183303	53	.	.	ID=4066;Type=distal-duplication;Left=chr1:238183002-238183367+;Right=chr1:238182962-238183303-;Distance=301;DiscordantMatePairAlignments=53;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.25
chr1	CG	SV	238183002	238183367	53	+	.	ID=4066;Type=distal-duplication;Left=chr1:238183002-238183367;Right=chr1:238182962-238183303
chr1	CG	SV	238182962	238183303	53	+	.	ID=4066;Type=distal-duplication;Left=chr1:238183002-238183367;Right=chr1:238182962-238183303
chr1	CG	SV	238459622	238461917	67	.	.	ID=3800;Type=deletion;Left=chr1:238459622-238460034+;Right=chr1:238461405-238461917+;Distance=1783;DiscordantMatePairAlignments=67;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_020066;RightGenes=NM_020066;XRef=rs67977112 (chr1:238459622-238461401);Frequency=0.24
chr1	CG	SV	238459622	238460034	67	+	.	ID=3800;Type=deletion;Left=chr1:238459622-238460034;Right=chr1:238461405-238461917
chr1	CG	SV	238461405	238461917	67	+	.	ID=3800;Type=deletion;Left=chr1:238459622-238460034;Right=chr1:238461405-238461917
chr1	CG	SV	238707870	238708569	10	.	.	ID=3798;Type=deletion;Left=chr1:238707870-238708344+;Right=chr1:238708272-238708569+;Distance=402;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72000745 (chr1:238707748-238708150);Frequency=0.76
chr1	CG	SV	238707870	238708344	10	+	.	ID=3798;Type=deletion;Left=chr1:238707870-238708344;Right=chr1:238708272-238708569
chr1	CG	SV	238708272	238708569	10	+	.	ID=3798;Type=deletion;Left=chr1:238707870-238708344;Right=chr1:238708272-238708569
chr1	CG	SV	241194420	241196196	17	.	.	ID=3795;Type=deletion;Left=chr1:241194420-241194843+;Right=chr1:241195864-241196196+;Distance=1444;DiscordantMatePairAlignments=17;LeftRepeat=AluJo:SINE:Alu;SegDup;Self chain;RightRepeat=AluSp:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr1	CG	SV	241194420	241194843	17	+	.	ID=3795;Type=deletion;Left=chr1:241194420-241194843;Right=chr1:241195864-241196196
chr1	CG	SV	241195864	241196196	17	+	.	ID=3795;Type=deletion;Left=chr1:241194420-241194843;Right=chr1:241195864-241196196
chr1	CG	SV	245917093	245923596	77	.	.	ID=3791;Type=deletion;Left=chr1:245917093-245917452+;Right=chr1:245923146-245923596+;Distance=6053;DiscordantMatePairAlignments=77;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72075933 (chr1:245917078-245923131);Frequency=0.94
chr1	CG	SV	245917093	245917452	77	+	.	ID=3791;Type=deletion;Left=chr1:245917093-245917452;Right=chr1:245923146-245923596
chr1	CG	SV	245923146	245923596	77	+	.	ID=3791;Type=deletion;Left=chr1:245917093-245917452;Right=chr1:245923146-245923596
chr1	CG	SV	246118115	246124535	36	.	.	ID=3790;Type=deletion;Left=chr1:246118115-246118591+;Right=chr1:246124275-246124535+;Distance=6160;DiscordantMatePairAlignments=36;LeftRepeat=(TTTA)n:Simple_repeat:Simple_repeat;Tandem TATT;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs68143636 (chr1:246118101-246124261);Frequency=1.00
chr1	CG	SV	246118115	246118591	36	+	.	ID=3790;Type=deletion;Left=chr1:246118115-246118591;Right=chr1:246124275-246124535
chr1	CG	SV	246124275	246124535	36	+	.	ID=3790;Type=deletion;Left=chr1:246118115-246118591;Right=chr1:246124275-246124535
chr1	CG	SV	246932639	246933088	10	.	.	ID=1198;Type=tandem-duplication;Left=chr1:246932639-246932857-;Right=chr1:246932731-246933088-;Distance=231;DiscordantMatePairAlignments=10;LeftRepeat=(CTTA)n:Simple_repeat:Simple_repeat;Tandem period 12;Tandem period 33;RightRepeat=CT-rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	246932639	246932857	10	-	.	ID=1198;Type=tandem-duplication;Left=chr1:246932639-246932857;Right=chr1:246932731-246933088
chr1	CG	SV	246932731	246933088	10	-	.	ID=1198;Type=tandem-duplication;Left=chr1:246932639-246932857;Right=chr1:246932731-246933088
chr1	CG	SV	246933810	246943201	37	.	.	ID=3788;Type=deletion;Left=chr1:246933810-246934192+;Right=chr1:246942716-246943201+;Distance=8906;DiscordantMatePairAlignments=37;LeftRepeat=;RightRepeat=MER4A1:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs72314582 (chr1:246933810-246942714);Frequency=0.00
chr1	CG	SV	246933810	246934192	37	+	.	ID=3788;Type=deletion;Left=chr1:246933810-246934192;Right=chr1:246942716-246943201
chr1	CG	SV	246942716	246943201	37	+	.	ID=3788;Type=deletion;Left=chr1:246933810-246934192;Right=chr1:246942716-246943201
chr2	CG	SV	1079776	1080903	14	.	.	ID=3785;Type=deletion;Left=chr2:1079776-1080095+;Right=chr2:1080729-1080903+;Distance=953;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 68;RightRepeat=Self chain;LeftGenes=NM_018968;RightGenes=NM_018968;XRef=;Frequency=0.94
chr2	CG	SV	1079776	1080095	14	+	.	ID=3785;Type=deletion;Left=chr2:1079776-1080095;Right=chr2:1080729-1080903
chr2	CG	SV	1080729	1080903	14	+	.	ID=3785;Type=deletion;Left=chr2:1079776-1080095;Right=chr2:1080729-1080903
chr2	CG	SV	1337076	1337951	31	.	.	ID=3784;Type=deletion;Left=chr2:1337076-1337586+;Right=chr2:1337523-1337951+;Distance=447;DiscordantMatePairAlignments=31;LeftRepeat=Self chain;Tandem period 106;RightRepeat=MIRb:SINE:MIR;Self chain;Tandem period 115;LeftGenes=NM_018968;RightGenes=NM_018968;XRef=rs66735644 (chr2:1337076-1337519);Frequency=0.94
chr2	CG	SV	1337076	1337586	31	+	.	ID=3784;Type=deletion;Left=chr2:1337076-1337586;Right=chr2:1337523-1337951
chr2	CG	SV	1337523	1337951	31	+	.	ID=3784;Type=deletion;Left=chr2:1337076-1337586;Right=chr2:1337523-1337951
chr2	CG	SV	1352861	1355069	81	.	.	ID=1197;Type=distal-duplication;Left=chr2:1352861-1353242-;Right=chr2:1354554-1355069-;Distance=1827;DiscordantMatePairAlignments=81;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	1352861	1353242	81	-	.	ID=1197;Type=distal-duplication;Left=chr2:1352861-1353242;Right=chr2:1354554-1355069
chr2	CG	SV	1354554	1355069	81	-	.	ID=1197;Type=distal-duplication;Left=chr2:1352861-1353242;Right=chr2:1354554-1355069
chr2	CG	SV	1353625	1355627	70	.	.	ID=3783;Type=distal-duplication;Left=chr2:1353625-1354005+;Right=chr2:1355079-1355627+;Distance=1454;DiscordantMatePairAlignments=70;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	1353625	1354005	70	+	.	ID=3783;Type=distal-duplication;Left=chr2:1353625-1354005;Right=chr2:1355079-1355627
chr2	CG	SV	1355079	1355627	70	+	.	ID=3783;Type=distal-duplication;Left=chr2:1353625-1354005;Right=chr2:1355079-1355627
chr2	CG	SV	2777781	2778761	27	.	.	ID=3778;Type=deletion;Left=chr2:2777781-2778131+;Right=chr2:2778251-2778761+;Distance=470;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;Tandem period 31;Tandem period 32;Tandem period 63;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67035310 (chr2:2777781-2778251);Frequency=0.76
chr2	CG	SV	2777781	2778131	27	+	.	ID=3778;Type=deletion;Left=chr2:2777781-2778131;Right=chr2:2778251-2778761
chr2	CG	SV	2778251	2778761	27	+	.	ID=3778;Type=deletion;Left=chr2:2777781-2778131;Right=chr2:2778251-2778761
chr2	CG	SV	4759185	4765834	93	.	.	ID=3777;Type=deletion;Left=chr2:4759185-4759443+;Right=chr2:4765250-4765834+;Distance=6065;DiscordantMatePairAlignments=93;LeftRepeat=;RightRepeat=L1M:LINE:L1;LeftGenes=;RightGenes=;XRef=rs74164256 (chr2:4759185-4765250);Frequency=1.00
chr2	CG	SV	4759185	4759443	93	+	.	ID=3777;Type=deletion;Left=chr2:4759185-4759443;Right=chr2:4765250-4765834
chr2	CG	SV	4765250	4765834	93	+	.	ID=3777;Type=deletion;Left=chr2:4759185-4759443;Right=chr2:4765250-4765834
chr2	CG	SV	5763048	5764383	19	.	.	ID=3776;Type=deletion;Left=chr2:5763048-5763440+;Right=chr2:5764127-5764383+;Distance=1079;DiscordantMatePairAlignments=19;LeftRepeat=Tandem period 22;Tandem period 23;RightRepeat=G-rich:Low_complexity:Low_complexity;Tandem period 22;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	5763048	5763440	19	+	.	ID=3776;Type=deletion;Left=chr2:5763048-5763440;Right=chr2:5764127-5764383
chr2	CG	SV	5764127	5764383	19	+	.	ID=3776;Type=deletion;Left=chr2:5763048-5763440;Right=chr2:5764127-5764383
chr2	CG	SV	6215746	6226579	50	.	.	ID=3775;Type=deletion;Left=chr2:6215746-6216180+;Right=chr2:6226171-6226579+;Distance=10425;DiscordantMatePairAlignments=50;LeftRepeat=MER4A1:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	6215746	6216180	50	+	.	ID=3775;Type=deletion;Left=chr2:6215746-6216180;Right=chr2:6226171-6226579
chr2	CG	SV	6226171	6226579	50	+	.	ID=3775;Type=deletion;Left=chr2:6215746-6216180;Right=chr2:6226171-6226579
chr2	CG	SV	17982347	17983947	29	.	.	ID=3772;Type=deletion;Left=chr2:17982347-17982666+;Right=chr2:17983501-17983947+;Distance=1154;DiscordantMatePairAlignments=29;LeftRepeat=L1MC5:LINE:L1;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr2	CG	SV	17982347	17982666	29	+	.	ID=3772;Type=deletion;Left=chr2:17982347-17982666;Right=chr2:17983501-17983947
chr2	CG	SV	17983501	17983947	29	+	.	ID=3772;Type=deletion;Left=chr2:17982347-17982666;Right=chr2:17983501-17983947
chr2	CG	SV	18354259	18355132	20	.	.	ID=3771;Type=deletion;Left=chr2:18354259-18354695+;Right=chr2:18354789-18355132+;Distance=530;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	18354259	18354695	20	+	.	ID=3771;Type=deletion;Left=chr2:18354259-18354695;Right=chr2:18354789-18355132
chr2	CG	SV	18354789	18355132	20	+	.	ID=3771;Type=deletion;Left=chr2:18354259-18354695;Right=chr2:18354789-18355132
chr2	CG	SV	19850733	19851486	76	.	.	ID=3770;Type=deletion;Left=chr2:19850733-19851212+;Right=chr2:19851289-19851486+;Distance=556;DiscordantMatePairAlignments=76;LeftRepeat=;RightRepeat=MIRm:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	19850733	19851212	76	+	.	ID=3770;Type=deletion;Left=chr2:19850733-19851212;Right=chr2:19851289-19851486
chr2	CG	SV	19851289	19851486	76	+	.	ID=3770;Type=deletion;Left=chr2:19850733-19851212;Right=chr2:19851289-19851486
chr2	CG	SV	32945242	32949598	11	.	.	ID=3766;Type=deletion;Left=chr2:32945242-32945454+;Right=chr2:32949138-32949598+;Distance=3896;DiscordantMatePairAlignments=11;LeftRepeat=(TCTCCC)n:Simple_repeat:Simple_repeat;Tandem TCTCCC;RightRepeat=L1PA16:LINE:L1;LeftGenes=NR_027098;RightGenes=NR_027098;XRef=;Frequency=0.65
chr2	CG	SV	32945242	32945454	11	+	.	ID=3766;Type=deletion;Left=chr2:32945242-32945454;Right=chr2:32949138-32949598
chr2	CG	SV	32949138	32949598	11	+	.	ID=3766;Type=deletion;Left=chr2:32945242-32945454;Right=chr2:32949138-32949598
chr2	CG	SV	33077966	33081230	186	.	.	ID=3765;Type=deletion;Left=chr2:33077966-33078639+;Right=chr2:33080796-33081230+;Distance=2830;DiscordantMatePairAlignments=186;LeftRepeat=MER5B:DNA:MER1_type;RightRepeat=;LeftGenes=NM_206943;RightGenes=NM_206943;XRef=rs72458672 (chr2:33077966-33080796);Frequency=0.59
chr2	CG	SV	33077966	33078639	186	+	.	ID=3765;Type=deletion;Left=chr2:33077966-33078639;Right=chr2:33080796-33081230
chr2	CG	SV	33080796	33081230	186	+	.	ID=3765;Type=deletion;Left=chr2:33077966-33078639;Right=chr2:33080796-33081230
chr2	CG	SV	41826660	41829798	42	.	.	ID=3760;Type=deletion;Left=chr2:41826660-41827175+;Right=chr2:41829384-41829798+;Distance=2724;DiscordantMatePairAlignments=42;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66596405 (chr2:41826660-41829384);Frequency=1.00
chr2	CG	SV	41826660	41827175	42	+	.	ID=3760;Type=deletion;Left=chr2:41826660-41827175;Right=chr2:41829384-41829798
chr2	CG	SV	41829384	41829798	42	+	.	ID=3760;Type=deletion;Left=chr2:41826660-41827175;Right=chr2:41829384-41829798
chr2	CG	SV	42199763	42201328	105	.	.	ID=3759;Type=deletion;Left=chr2:42199763-42200134+;Right=chr2:42200822-42201328+;Distance=1059;DiscordantMatePairAlignments=105;LeftRepeat=L1ME1:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr2	CG	SV	42199763	42200134	105	+	.	ID=3759;Type=deletion;Left=chr2:42199763-42200134;Right=chr2:42200822-42201328
chr2	CG	SV	42200822	42201328	105	+	.	ID=3759;Type=deletion;Left=chr2:42199763-42200134;Right=chr2:42200822-42201328
chr2	CG	SV	43512289	43513122	21	.	.	ID=3758;Type=deletion;Left=chr2:43512289-43512694+;Right=chr2:43512814-43513122+;Distance=525;DiscordantMatePairAlignments=21;LeftRepeat=Tandem T;Tandem period 192;RightRepeat=AluY:SINE:Alu;Tandem period 134;LeftGenes=NM_001083953;NM_022065;RightGenes=NM_001083953;NM_022065;XRef=rs71416104 (chr2:43512284-43512686);Frequency=0.06
chr2	CG	SV	43512289	43512694	21	+	.	ID=3758;Type=deletion;Left=chr2:43512289-43512694;Right=chr2:43512814-43513122
chr2	CG	SV	43512814	43513122	21	+	.	ID=3758;Type=deletion;Left=chr2:43512289-43512694;Right=chr2:43512814-43513122
chr2	CG	SV	44061914	44062394	18	+	.	ID=4040;Type=interchromosomal;Left=chr2:44061914-44062394+;Right=chr5:173724585-173724724-;Distance=;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=;LeftGenes=NM_133259;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	173724585	173724724	18	+	.	ID=4040;Type=interchromosomal;Left=chr2:44061914-44062394+;Right=chr5:173724585-173724724-;Distance=;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=;LeftGenes=NM_133259;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	48635356	48638594	22	.	.	ID=3754;Type=deletion;Left=chr2:48635356-48635574+;Right=chr2:48638388-48638594+;Distance=3032;DiscordantMatePairAlignments=22;LeftRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs74164294 (chr2:48635356-48638388);Frequency=0.59
chr2	CG	SV	48635356	48635574	22	+	.	ID=3754;Type=deletion;Left=chr2:48635356-48635574;Right=chr2:48638388-48638594
chr2	CG	SV	48638388	48638594	22	+	.	ID=3754;Type=deletion;Left=chr2:48635356-48635574;Right=chr2:48638388-48638594
chr2	CG	SV	51078052	51079503	75	.	.	ID=3753;Type=deletion;Left=chr2:51078052-51078625+;Right=chr2:51079047-51079503+;Distance=995;DiscordantMatePairAlignments=75;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_001135659;NM_004801;RightGenes=NM_001135659;NM_004801;XRef=rs67174145 (chr2:51078052-51079047);Frequency=0.06
chr2	CG	SV	51078052	51078625	75	+	.	ID=3753;Type=deletion;Left=chr2:51078052-51078625;Right=chr2:51079047-51079503
chr2	CG	SV	51079047	51079503	75	+	.	ID=3753;Type=deletion;Left=chr2:51078052-51078625;Right=chr2:51079047-51079503
chr2	CG	SV	54418997	54421341	17	.	.	ID=3750;Type=deletion;Left=chr2:54418997-54419523+;Right=chr2:54420977-54421341+;Distance=1980;DiscordantMatePairAlignments=17;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_001100396;RightGenes=NM_001100396;XRef=rs66784896 (chr2:54419000-54420977);Frequency=0.94
chr2	CG	SV	54418997	54419523	17	+	.	ID=3750;Type=deletion;Left=chr2:54418997-54419523;Right=chr2:54420977-54421341
chr2	CG	SV	54420977	54421341	17	+	.	ID=3750;Type=deletion;Left=chr2:54418997-54419523;Right=chr2:54420977-54421341
chr2	CG	SV	64994139	64995102	12	.	.	ID=3746;Type=deletion;Left=chr2:64994139-64994279+;Right=chr2:64994645-64995102+;Distance=506;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	64994139	64994279	12	+	.	ID=3746;Type=deletion;Left=chr2:64994139-64994279;Right=chr2:64994645-64995102
chr2	CG	SV	64994645	64995102	12	+	.	ID=3746;Type=deletion;Left=chr2:64994139-64994279;Right=chr2:64994645-64995102
chr2	CG	SV	69978557	69979572	80	.	.	ID=3744;Type=deletion;Left=chr2:69978557-69979052+;Right=chr2:69979078-69979572+;Distance=521;DiscordantMatePairAlignments=80;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;LeftGenes=NM_006857;RightGenes=NM_006857;XRef=rs67525018 (chr2:69978548-69979069);Frequency=0.76
chr2	CG	SV	69978557	69979052	80	+	.	ID=3744;Type=deletion;Left=chr2:69978557-69979052;Right=chr2:69979078-69979572
chr2	CG	SV	69979078	69979572	80	+	.	ID=3744;Type=deletion;Left=chr2:69978557-69979052;Right=chr2:69979078-69979572
chr2	CG	SV	70514878	70516395	33	.	.	ID=3743;Type=deletion;Left=chr2:70514878-70515341+;Right=chr2:70515941-70516395+;Distance=1063;DiscordantMatePairAlignments=33;LeftRepeat=(CCTAT)n:Simple_repeat:Simple_repeat;Tandem CTATC;Tandem period 17;Tandem period 22;Tandem period 27;RightRepeat=(CCTAT)n:Simple_repeat:Simple_repeat;Tandem CTATC;Tandem period 17;Tandem period 27;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr2	CG	SV	70514878	70515341	33	+	.	ID=3743;Type=deletion;Left=chr2:70514878-70515341;Right=chr2:70515941-70516395
chr2	CG	SV	70515941	70516395	33	+	.	ID=3743;Type=deletion;Left=chr2:70514878-70515341;Right=chr2:70515941-70516395
chr2	CG	SV	73513097	73513976	41	.	.	ID=3740;Type=distal-duplication;Left=chr2:73513097-73513452+;Right=chr2:73513740-73513976+;Distance=643;DiscordantMatePairAlignments=41;LeftRepeat=MLT1A0:LTR:MaLR;RightRepeat=L2:LINE:L2;LeftGenes=NM_015120;RightGenes=NM_015120;XRef=;Frequency=0.00
chr2	CG	SV	73513097	73513452	41	+	.	ID=3740;Type=distal-duplication;Left=chr2:73513097-73513452;Right=chr2:73513740-73513976
chr2	CG	SV	73513740	73513976	41	+	.	ID=3740;Type=distal-duplication;Left=chr2:73513097-73513452;Right=chr2:73513740-73513976
chr2	CG	SV	73512523	73513970	74	.	.	ID=1195;Type=distal-duplication;Left=chr2:73512523-73513101-;Right=chr2:73513739-73513970-;Distance=869;DiscordantMatePairAlignments=74;LeftRepeat=MLT1A0:LTR:MaLR;RightRepeat=;LeftGenes=NM_015120;RightGenes=NM_015120;XRef=;Frequency=0.00
chr2	CG	SV	73512523	73513101	74	-	.	ID=1195;Type=distal-duplication;Left=chr2:73512523-73513101;Right=chr2:73513739-73513970
chr2	CG	SV	73513739	73513970	74	-	.	ID=1195;Type=distal-duplication;Left=chr2:73512523-73513101;Right=chr2:73513739-73513970
chr2	CG	SV	76380015	76382911	71	.	.	ID=3739;Type=deletion;Left=chr2:76380015-76380548+;Right=chr2:76382410-76382911+;Distance=2395;DiscordantMatePairAlignments=71;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68153335 (chr2:76380020-76382415);Frequency=1.00
chr2	CG	SV	76380015	76380548	71	+	.	ID=3739;Type=deletion;Left=chr2:76380015-76380548;Right=chr2:76382410-76382911
chr2	CG	SV	76382410	76382911	71	+	.	ID=3739;Type=deletion;Left=chr2:76380015-76380548;Right=chr2:76382410-76382911
chr2	CG	SV	77511368	77512881	12	.	.	ID=3738;Type=deletion;Left=chr2:77511368-77511838+;Right=chr2:77512720-77512881+;Distance=1352;DiscordantMatePairAlignments=12;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_001134745;RightGenes=NM_001134745;XRef=;Frequency=0.00
chr2	CG	SV	77511368	77511838	12	+	.	ID=3738;Type=deletion;Left=chr2:77511368-77511838;Right=chr2:77512720-77512881
chr2	CG	SV	77512720	77512881	12	+	.	ID=3738;Type=deletion;Left=chr2:77511368-77511838;Right=chr2:77512720-77512881
chr2	CG	SV	78830158	78832692	27	.	.	ID=3737;Type=deletion;Left=chr2:78830158-78830531+;Right=chr2:78832418-78832692+;Distance=2260;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	78830158	78830531	27	+	.	ID=3737;Type=deletion;Left=chr2:78830158-78830531;Right=chr2:78832418-78832692
chr2	CG	SV	78832418	78832692	27	+	.	ID=3737;Type=deletion;Left=chr2:78830158-78830531;Right=chr2:78832418-78832692
chr2	CG	SV	88810348	88814051	211	.	.	ID=3733;Type=deletion;Left=chr2:88810348-88810955+;Right=chr2:88813402-88814051+;Distance=3054;DiscordantMatePairAlignments=211;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_144563;RightGenes=NM_144563;XRef=rs72121102 (chr2:88810343-88813397);Frequency=1.00
chr2	CG	SV	88810348	88810955	211	+	.	ID=3733;Type=deletion;Left=chr2:88810348-88810955;Right=chr2:88813402-88814051
chr2	CG	SV	88813402	88814051	211	+	.	ID=3733;Type=deletion;Left=chr2:88810348-88810955;Right=chr2:88813402-88814051
chr2	CG	SV	88941986	88978803	37	.	.	ID=508;Type=probable-inversion;Left=chr2:88941986-88942550-;Right=chr2:88978417-88978803+;Distance=35867;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr2	CG	SV	88941986	88942550	37	-	.	ID=508;Type=probable-inversion;Left=chr2:88941986-88942550;Right=chr2:88978417-88978803
chr2	CG	SV	88978417	88978803	37	-	.	ID=508;Type=probable-inversion;Left=chr2:88941986-88942550;Right=chr2:88978417-88978803
chr2	CG	SV	94892318	94912098	68	.	.	ID=3385;Type=complex;Left=chr2:94892318-94892689+;Right=chr2:94911773-94912098+;Distance=19455;DiscordantMatePairAlignments=68;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr2	CG	SV	94892318	94892689	68	+	.	ID=3385;Type=complex;Left=chr2:94892318-94892689;Right=chr2:94911773-94912098
chr2	CG	SV	94911773	94912098	68	+	.	ID=3385;Type=complex;Left=chr2:94892318-94892689;Right=chr2:94911773-94912098
chr2	CG	SV	94912261	94913634	14	.	.	ID=3383;Type=complex;Left=chr2:94912261-94912735+;Right=chr2:94912933-94913634+;Distance=672;DiscordantMatePairAlignments=14;LeftRepeat=(CA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem AC;RightRepeat=L1PA5:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr2	CG	SV	94912261	94912735	14	+	.	ID=3383;Type=complex;Left=chr2:94912261-94912735;Right=chr2:94912933-94913634
chr2	CG	SV	94912933	94913634	14	+	.	ID=3383;Type=complex;Left=chr2:94912261-94912735;Right=chr2:94912933-94913634
chr2	CG	SV	99470145	99471971	272	.	.	ID=3378;Type=deletion;Left=chr2:99470145-99470582+;Right=chr2:99471463-99471971+;Distance=1318;DiscordantMatePairAlignments=272;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=Self chain;LeftGenes=NM_001037872;NM_016316;RightGenes=NM_001037872;NM_016316;XRef=rs72124669 (chr2:99470158-99471463);Frequency=0.59
chr2	CG	SV	99470145	99470582	272	+	.	ID=3378;Type=deletion;Left=chr2:99470145-99470582;Right=chr2:99471463-99471971
chr2	CG	SV	99471463	99471971	272	+	.	ID=3378;Type=deletion;Left=chr2:99470145-99470582;Right=chr2:99471463-99471971
chr2	CG	SV	101599016	101600485	20	.	.	ID=3376;Type=deletion;Left=chr2:101599016-101599580+;Right=chr2:101600022-101600485+;Distance=1006;DiscordantMatePairAlignments=20;LeftRepeat=L1ME3A:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr2	CG	SV	101599016	101599580	20	+	.	ID=3376;Type=deletion;Left=chr2:101599016-101599580;Right=chr2:101600022-101600485
chr2	CG	SV	101600022	101600485	20	+	.	ID=3376;Type=deletion;Left=chr2:101599016-101599580;Right=chr2:101600022-101600485
chr2	CG	SV	101760243	101768382	109	.	.	ID=3375;Type=deletion;Left=chr2:101760243-101760651+;Right=chr2:101767872-101768382+;Distance=7629;DiscordantMatePairAlignments=109;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_004834;NM_145686;NM_145687;RightGenes=NM_004834;NM_145686;NM_145687;XRef=;Frequency=0.00
chr2	CG	SV	101760243	101760651	109	+	.	ID=3375;Type=deletion;Left=chr2:101760243-101760651;Right=chr2:101767872-101768382
chr2	CG	SV	101767872	101768382	109	+	.	ID=3375;Type=deletion;Left=chr2:101760243-101760651;Right=chr2:101767872-101768382
chr2	CG	SV	105805179	105807724	83	.	.	ID=3374;Type=deletion;Left=chr2:105805179-105805537+;Right=chr2:105807162-105807724+;Distance=1983;DiscordantMatePairAlignments=83;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001004722;NM_003581;RightGenes=NM_001004722;NM_003581;XRef=;Frequency=0.00
chr2	CG	SV	105805179	105805537	83	+	.	ID=3374;Type=deletion;Left=chr2:105805179-105805537;Right=chr2:105807162-105807724
chr2	CG	SV	105807162	105807724	83	+	.	ID=3374;Type=deletion;Left=chr2:105805179-105805537;Right=chr2:105807162-105807724
chr2	CG	SV	106061510	106062778	52	.	.	ID=3373;Type=deletion;Left=chr2:106061510-106061941+;Right=chr2:106062327-106062778+;Distance=817;DiscordantMatePairAlignments=52;LeftRepeat=Self chain;RightRepeat=L1MB3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs68188813 (chr2:106061510-106062327);Frequency=0.71
chr2	CG	SV	106061510	106061941	52	+	.	ID=3373;Type=deletion;Left=chr2:106061510-106061941;Right=chr2:106062327-106062778
chr2	CG	SV	106062327	106062778	52	+	.	ID=3373;Type=deletion;Left=chr2:106061510-106061941;Right=chr2:106062327-106062778
chr2	CG	SV	106245992	106252854	39	.	.	ID=3372;Type=deletion;Left=chr2:106245992-106246358+;Right=chr2:106252347-106252854+;Distance=6355;DiscordantMatePairAlignments=39;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr2	CG	SV	106245992	106246358	39	+	.	ID=3372;Type=deletion;Left=chr2:106245992-106246358;Right=chr2:106252347-106252854
chr2	CG	SV	106252347	106252854	39	+	.	ID=3372;Type=deletion;Left=chr2:106245992-106246358;Right=chr2:106252347-106252854
chr2	CG	SV	107641743	107645960	20	.	.	ID=3371;Type=deletion;Left=chr2:107641743-107642184+;Right=chr2:107645541-107645960+;Distance=3798;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=MER4E1:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr2	CG	SV	107641743	107642184	20	+	.	ID=3371;Type=deletion;Left=chr2:107641743-107642184;Right=chr2:107645541-107645960
chr2	CG	SV	107645541	107645960	20	+	.	ID=3371;Type=deletion;Left=chr2:107641743-107642184;Right=chr2:107645541-107645960
chr2	CG	SV	110210043	111169988	73	.	.	ID=3370;Type=deletion;Left=chr2:110210043-110210558+;Right=chr2:111169574-111169988+;Distance=959531;DiscordantMatePairAlignments=73;LeftRepeat=SegDup;Self chain;RightRepeat=LTR19B:LTR:ERV1;Self chain;LeftGenes=NM_005434;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	110210043	110210558	73	+	.	ID=3370;Type=deletion;Left=chr2:110210043-110210558;Right=chr2:111169574-111169988
chr2	CG	SV	111169574	111169988	73	+	.	ID=3370;Type=deletion;Left=chr2:110210043-110210558;Right=chr2:111169574-111169988
chr2	CG	SV	115344577	115345759	43	.	.	ID=3368;Type=deletion;Left=chr2:115344577-115344968+;Right=chr2:115345316-115345759+;Distance=739;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=;LeftGenes=NM_020868;RightGenes=NM_020868;XRef=rs66852547 (chr2:115344577-115345316);Frequency=0.18
chr2	CG	SV	115344577	115344968	43	+	.	ID=3368;Type=deletion;Left=chr2:115344577-115344968;Right=chr2:115345316-115345759
chr2	CG	SV	115345316	115345759	43	+	.	ID=3368;Type=deletion;Left=chr2:115344577-115344968;Right=chr2:115345316-115345759
chr2	CG	SV	118566907	118568708	22	.	.	ID=3367;Type=deletion;Left=chr2:118566907-118567232+;Right=chr2:118568476-118568708+;Distance=1569;DiscordantMatePairAlignments=22;LeftRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GAT;RightRepeat=;LeftGenes=NM_016133;RightGenes=NM_016133;XRef=;Frequency=0.00
chr2	CG	SV	118566907	118567232	22	+	.	ID=3367;Type=deletion;Left=chr2:118566907-118567232;Right=chr2:118568476-118568708
chr2	CG	SV	118568476	118568708	22	+	.	ID=3367;Type=deletion;Left=chr2:118566907-118567232;Right=chr2:118568476-118568708
chr2	CG	SV	119369799	119376263	61	.	.	ID=3366;Type=deletion;Left=chr2:119369799-119370063+;Right=chr2:119375850-119376263+;Distance=6051;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72495924 (chr2:119369787-119375838);Frequency=0.12
chr2	CG	SV	119369799	119370063	61	+	.	ID=3366;Type=deletion;Left=chr2:119369799-119370063;Right=chr2:119375850-119376263
chr2	CG	SV	119375850	119376263	61	+	.	ID=3366;Type=deletion;Left=chr2:119369799-119370063;Right=chr2:119375850-119376263
chr2	CG	SV	123081348	123082238	15	.	.	ID=3365;Type=deletion;Left=chr2:123081348-123081503+;Right=chr2:123081846-123082238+;Distance=498;DiscordantMatePairAlignments=15;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr2	CG	SV	123081348	123081503	15	+	.	ID=3365;Type=deletion;Left=chr2:123081348-123081503;Right=chr2:123081846-123082238
chr2	CG	SV	123081846	123082238	15	+	.	ID=3365;Type=deletion;Left=chr2:123081348-123081503;Right=chr2:123081846-123082238
chr2	CG	SV	124768226	124769710	86	.	.	ID=4033;Type=distal-duplication;Left=chr2:124768226-124768567+;Right=chr2:124769400-124769710-;Distance=1484;DiscordantMatePairAlignments=86;LeftRepeat=;RightRepeat=MER41B:LTR:ERV1;LeftGenes=NM_130773;RightGenes=NM_130773;XRef=;Frequency=0.82
chr2	CG	SV	124768226	124768567	86	+	.	ID=4033;Type=distal-duplication;Left=chr2:124768226-124768567;Right=chr2:124769400-124769710
chr2	CG	SV	124769400	124769710	86	+	.	ID=4033;Type=distal-duplication;Left=chr2:124768226-124768567;Right=chr2:124769400-124769710
chr2	CG	SV	124767765	124769709	51	.	.	ID=505;Type=distal-duplication;Left=chr2:124767765-124768229-;Right=chr2:124769384-124769709+;Distance=1155;DiscordantMatePairAlignments=51;LeftRepeat=;RightRepeat=;LeftGenes=NM_130773;RightGenes=NM_130773;XRef=;Frequency=0.82
chr2	CG	SV	124767765	124768229	51	-	.	ID=505;Type=distal-duplication;Left=chr2:124767765-124768229;Right=chr2:124769384-124769709
chr2	CG	SV	124769384	124769709	51	-	.	ID=505;Type=distal-duplication;Left=chr2:124767765-124768229;Right=chr2:124769384-124769709
chr2	CG	SV	125483031	125484873	26	.	.	ID=3364;Type=deletion;Left=chr2:125483031-125483333+;Right=chr2:125484718-125484873+;Distance=1687;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr2	CG	SV	125483031	125483333	26	+	.	ID=3364;Type=deletion;Left=chr2:125483031-125483333;Right=chr2:125484718-125484873
chr2	CG	SV	125484718	125484873	26	+	.	ID=3364;Type=deletion;Left=chr2:125483031-125483333;Right=chr2:125484718-125484873
chr2	CG	SV	126159721	126168804	127	.	.	ID=3363;Type=deletion;Left=chr2:126159721-126160231+;Right=chr2:126168305-126168804+;Distance=8584;DiscordantMatePairAlignments=127;LeftRepeat=L1MD1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66740069 (chr2:126159717-126168301);Frequency=0.88
chr2	CG	SV	126159721	126160231	127	+	.	ID=3363;Type=deletion;Left=chr2:126159721-126160231;Right=chr2:126168305-126168804
chr2	CG	SV	126168305	126168804	127	+	.	ID=3363;Type=deletion;Left=chr2:126159721-126160231;Right=chr2:126168305-126168804
chr2	CG	SV	130265849	130270498	57	.	.	ID=3361;Type=complex;Left=chr2:130265849-130266419+;Right=chr2:130270026-130270498+;Distance=4177;DiscordantMatePairAlignments=57;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	130265849	130266419	57	+	.	ID=3361;Type=complex;Left=chr2:130265849-130266419;Right=chr2:130270026-130270498
chr2	CG	SV	130270026	130270498	57	+	.	ID=3361;Type=complex;Left=chr2:130265849-130266419;Right=chr2:130270026-130270498
chr2	CG	SV	130270627	130275785	99	.	.	ID=3360;Type=complex;Left=chr2:130270627-130271158+;Right=chr2:130275258-130275785+;Distance=4631;DiscordantMatePairAlignments=99;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	130270627	130271158	99	+	.	ID=3360;Type=complex;Left=chr2:130270627-130271158;Right=chr2:130275258-130275785
chr2	CG	SV	130275258	130275785	99	+	.	ID=3360;Type=complex;Left=chr2:130270627-130271158;Right=chr2:130275258-130275785
chr2	CG	SV	132733902	132735735	817	.	.	ID=3358;Type=deletion;Left=chr2:132733902-132734478+;Right=chr2:132735178-132735735+;Distance=1276;DiscordantMatePairAlignments=817;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs72407802 (chr2:132733904-132735114);Frequency=1.00
chr2	CG	SV	132733902	132734478	817	+	.	ID=3358;Type=deletion;Left=chr2:132733902-132734478;Right=chr2:132735178-132735735
chr2	CG	SV	132735178	132735735	817	+	.	ID=3358;Type=deletion;Left=chr2:132733902-132734478;Right=chr2:132735178-132735735
chr2	CG	SV	132736921	132737281	116	+	.	ID=3837;Type=complex;Left=chr2:132736921-132737281+;Right=chr17:42569544-42569727-;Distance=;DiscordantMatePairAlignments=116;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001114091;NM_001256;XRef=;Frequency=0.00
chr17	CG	SV	42569544	42569727	116	+	.	ID=3837;Type=complex;Left=chr2:132736921-132737281+;Right=chr17:42569544-42569727-;Distance=;DiscordantMatePairAlignments=116;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001114091;NM_001256;XRef=;Frequency=0.00
chr2	CG	SV	132742750	132747162	453	.	.	ID=1150;Type=complex;Left=chr2:132742750-132743136-;Right=chr2:132746717-132747162-;Distance=4026;DiscordantMatePairAlignments=453;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	132742750	132743136	453	-	.	ID=1150;Type=complex;Left=chr2:132742750-132743136;Right=chr2:132746717-132747162
chr2	CG	SV	132746717	132747162	453	-	.	ID=1150;Type=complex;Left=chr2:132742750-132743136;Right=chr2:132746717-132747162
chr2	CG	SV	132747165	132747450	98	+	.	ID=2904;Type=complex;Left=chr2:132747165-132747450+;Right=chr12:36734988-36735173+;Distance=;DiscordantMatePairAlignments=98;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	36734988	36735173	98	+	.	ID=2904;Type=complex;Left=chr2:132747165-132747450+;Right=chr12:36734988-36735173+;Distance=;DiscordantMatePairAlignments=98;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	134683175	134687099	255	.	.	ID=3353;Type=deletion;Left=chr2:134683175-134683689+;Right=chr2:134686605-134687099+;Distance=3430;DiscordantMatePairAlignments=255;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67845770 (chr2:134683170-134686600);Frequency=0.94
chr2	CG	SV	134683175	134683689	255	+	.	ID=3353;Type=deletion;Left=chr2:134683175-134683689;Right=chr2:134686605-134687099
chr2	CG	SV	134686605	134687099	255	+	.	ID=3353;Type=deletion;Left=chr2:134683175-134683689;Right=chr2:134686605-134687099
chr2	CG	SV	134998369	134999549	55	.	.	ID=3352;Type=deletion;Left=chr2:134998369-134998748+;Right=chr2:134999057-134999549+;Distance=688;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=L1PA10:LINE:L1;LeftGenes=NM_030923;RightGenes=NM_030923;XRef=;Frequency=0.06
chr2	CG	SV	134998369	134998748	55	+	.	ID=3352;Type=deletion;Left=chr2:134998369-134998748;Right=chr2:134999057-134999549
chr2	CG	SV	134999057	134999549	55	+	.	ID=3352;Type=deletion;Left=chr2:134998369-134998748;Right=chr2:134999057-134999549
chr2	CG	SV	135688269	135693245	60	.	.	ID=3350;Type=deletion;Left=chr2:135688269-135688889+;Right=chr2:135692870-135693245+;Distance=4601;DiscordantMatePairAlignments=60;LeftRepeat=MLT1E3:LTR:MaLR;RightRepeat=;LeftGenes=NM_032143;RightGenes=NM_032143;XRef=;Frequency=0.00
chr2	CG	SV	135688269	135688889	60	+	.	ID=3350;Type=deletion;Left=chr2:135688269-135688889;Right=chr2:135692870-135693245
chr2	CG	SV	135692870	135693245	60	+	.	ID=3350;Type=deletion;Left=chr2:135688269-135688889;Right=chr2:135692870-135693245
chr2	CG	SV	139692080	139692980	17	.	.	ID=3349;Type=deletion;Left=chr2:139692080-139692641+;Right=chr2:139692563-139692980+;Distance=483;DiscordantMatePairAlignments=17;LeftRepeat=LTR16C:LTR:ERVL;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	139692080	139692641	17	+	.	ID=3349;Type=deletion;Left=chr2:139692080-139692641;Right=chr2:139692563-139692980
chr2	CG	SV	139692563	139692980	17	+	.	ID=3349;Type=deletion;Left=chr2:139692080-139692641;Right=chr2:139692563-139692980
chr2	CG	SV	152506805	152507775	13	.	.	ID=3340;Type=deletion;Left=chr2:152506805-152507125+;Right=chr2:152507438-152507775+;Distance=633;DiscordantMatePairAlignments=13;LeftRepeat=L3:LINE:CR1;RightRepeat=MER11A:LTR:ERVK;LeftGenes=NM_000726;NM_001005746;NM_001005747;NM_001145798;RightGenes=NM_000726;NM_001005746;NM_001005747;NM_001145798;XRef=;Frequency=0.00
chr2	CG	SV	152506805	152507125	13	+	.	ID=3340;Type=deletion;Left=chr2:152506805-152507125;Right=chr2:152507438-152507775
chr2	CG	SV	152507438	152507775	13	+	.	ID=3340;Type=deletion;Left=chr2:152506805-152507125;Right=chr2:152507438-152507775
chr2	CG	SV	157377892	157379971	69	.	.	ID=1149;Type=distal-duplication;Left=chr2:157377892-157378270-;Right=chr2:157379548-157379971-;Distance=1701;DiscordantMatePairAlignments=69;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	157377892	157378270	69	-	.	ID=1149;Type=distal-duplication;Left=chr2:157377892-157378270;Right=chr2:157379548-157379971
chr2	CG	SV	157379548	157379971	69	-	.	ID=1149;Type=distal-duplication;Left=chr2:157377892-157378270;Right=chr2:157379548-157379971
chr2	CG	SV	157378690	157380383	59	.	.	ID=3289;Type=distal-duplication;Left=chr2:157378690-157379113+;Right=chr2:157379967-157380383+;Distance=1277;DiscordantMatePairAlignments=59;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72082229 (chr2:157378690-157379967);Frequency=0.00
chr2	CG	SV	157378690	157379113	59	+	.	ID=3289;Type=distal-duplication;Left=chr2:157378690-157379113;Right=chr2:157379967-157380383
chr2	CG	SV	157379967	157380383	59	+	.	ID=3289;Type=distal-duplication;Left=chr2:157378690-157379113;Right=chr2:157379967-157380383
chr2	CG	SV	159857370	159860366	121	.	.	ID=3287;Type=deletion;Left=chr2:159857370-159857954+;Right=chr2:159859901-159860366+;Distance=2531;DiscordantMatePairAlignments=121;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66496159 (chr2:159857363-159859894);Frequency=1.00
chr2	CG	SV	159857370	159857954	121	+	.	ID=3287;Type=deletion;Left=chr2:159857370-159857954;Right=chr2:159859901-159860366
chr2	CG	SV	159859901	159860366	121	+	.	ID=3287;Type=deletion;Left=chr2:159857370-159857954;Right=chr2:159859901-159860366
chr2	CG	SV	172888242	172894606	12	.	.	ID=3279;Type=deletion;Left=chr2:172888242-172888706+;Right=chr2:172894367-172894606+;Distance=6125;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr2	CG	SV	172888242	172888706	12	+	.	ID=3279;Type=deletion;Left=chr2:172888242-172888706;Right=chr2:172894367-172894606
chr2	CG	SV	172894367	172894606	12	+	.	ID=3279;Type=deletion;Left=chr2:172888242-172888706;Right=chr2:172894367-172894606
chr2	CG	SV	180119673	180124446	12	.	.	ID=4032;Type=complex;Left=chr2:180119673-180120107+;Right=chr2:180124082-180124446-;Distance=4773;DiscordantMatePairAlignments=12;LeftRepeat=L1MA3:LINE:L1;RightRepeat=MER41E:LTR:ERV1;LeftGenes=NM_001113397;NM_001113398;NM_152520;RightGenes=NM_001113397;NM_001113398;NM_152520;XRef=;Frequency=0.18
chr2	CG	SV	180119673	180120107	12	+	.	ID=4032;Type=complex;Left=chr2:180119673-180120107;Right=chr2:180124082-180124446
chr2	CG	SV	180124082	180124446	12	+	.	ID=4032;Type=complex;Left=chr2:180119673-180120107;Right=chr2:180124082-180124446
chr2	CG	SV	180123500	180124888	58	.	.	ID=1147;Type=complex;Left=chr2:180123500-180123894-;Right=chr2:180124465-180124888-;Distance=994;DiscordantMatePairAlignments=58;LeftRepeat=;RightRepeat=;LeftGenes=NM_001113397;NM_001113398;NM_152520;RightGenes=NM_001113397;NM_001113398;NM_152520;XRef=;Frequency=0.18
chr2	CG	SV	180123500	180123894	58	-	.	ID=1147;Type=complex;Left=chr2:180123500-180123894;Right=chr2:180124465-180124888
chr2	CG	SV	180124465	180124888	58	-	.	ID=1147;Type=complex;Left=chr2:180123500-180123894;Right=chr2:180124465-180124888
chr2	CG	SV	182273509	182274316	12	.	.	ID=3276;Type=deletion;Left=chr2:182273509-182274045+;Right=chr2:182273837-182274316+;Distance=328;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67398526 (chr2:182273485-182273813);Frequency=1.00
chr2	CG	SV	182273509	182274045	12	+	.	ID=3276;Type=deletion;Left=chr2:182273509-182274045;Right=chr2:182273837-182274316
chr2	CG	SV	182273837	182274316	12	+	.	ID=3276;Type=deletion;Left=chr2:182273509-182274045;Right=chr2:182273837-182274316
chr2	CG	SV	182565161	182566293	59	.	.	ID=3275;Type=deletion;Left=chr2:182565161-182565545+;Right=chr2:182565844-182566293+;Distance=683;DiscordantMatePairAlignments=59;LeftRepeat=L3b:LINE:CR1;RightRepeat=;LeftGenes=NM_001080545;RightGenes=NM_001080545;XRef=;Frequency=0.47
chr2	CG	SV	182565161	182565545	59	+	.	ID=3275;Type=deletion;Left=chr2:182565161-182565545;Right=chr2:182565844-182566293
chr2	CG	SV	182565844	182566293	59	+	.	ID=3275;Type=deletion;Left=chr2:182565161-182565545;Right=chr2:182565844-182566293
chr2	CG	SV	187382897	187385158	14	.	.	ID=3273;Type=deletion;Left=chr2:187382897-187383134+;Right=chr2:187384766-187385158+;Distance=1869;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=L1PA7:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	187382897	187383134	14	+	.	ID=3273;Type=deletion;Left=chr2:187382897-187383134;Right=chr2:187384766-187385158
chr2	CG	SV	187384766	187385158	14	+	.	ID=3273;Type=deletion;Left=chr2:187382897-187383134;Right=chr2:187384766-187385158
chr2	CG	SV	188827864	188829554	45	.	.	ID=3272;Type=deletion;Left=chr2:188827864-188828267+;Right=chr2:188829227-188829554+;Distance=1363;DiscordantMatePairAlignments=45;LeftRepeat=L1ME1:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr2	CG	SV	188827864	188828267	45	+	.	ID=3272;Type=deletion;Left=chr2:188827864-188828267;Right=chr2:188829227-188829554
chr2	CG	SV	188829227	188829554	45	+	.	ID=3272;Type=deletion;Left=chr2:188827864-188828267;Right=chr2:188829227-188829554
chr2	CG	SV	195923061	195923859	14	.	.	ID=3270;Type=deletion;Left=chr2:195923061-195923534+;Right=chr2:195923473-195923859+;Distance=412;DiscordantMatePairAlignments=14;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67052058 (chr2:195923059-195923471);Frequency=0.94
chr2	CG	SV	195923061	195923534	14	+	.	ID=3270;Type=deletion;Left=chr2:195923061-195923534;Right=chr2:195923473-195923859
chr2	CG	SV	195923473	195923859	14	+	.	ID=3270;Type=deletion;Left=chr2:195923061-195923534;Right=chr2:195923473-195923859
chr2	CG	SV	201854903	201858118	68	.	.	ID=3269;Type=deletion;Left=chr2:201854903-201855407+;Right=chr2:201857695-201858118+;Distance=2792;DiscordantMatePairAlignments=68;LeftRepeat=SVA:Other:Other;RightRepeat=;LeftGenes=NM_001080124;NM_001080125;NM_001228;NM_033355;NM_033356;RightGenes=NM_001080124;NM_001080125;NM_001228;NM_033355;NM_033356;XRef=rs66663250 (chr2:201854893-201857685);Frequency=0.71
chr2	CG	SV	201854903	201855407	68	+	.	ID=3269;Type=deletion;Left=chr2:201854903-201855407;Right=chr2:201857695-201858118
chr2	CG	SV	201857695	201858118	68	+	.	ID=3269;Type=deletion;Left=chr2:201854903-201855407;Right=chr2:201857695-201858118
chr2	CG	SV	205277326	205278445	95	.	.	ID=1146;Type=tandem-duplication;Left=chr2:205277326-205277886-;Right=chr2:205277997-205278445-;Distance=559;DiscordantMatePairAlignments=95;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_057177;NM_152526;NM_205863;RightGenes=NM_057177;NM_152526;NM_205863;XRef=;Frequency=0.00
chr2	CG	SV	205277326	205277886	95	-	.	ID=1146;Type=tandem-duplication;Left=chr2:205277326-205277886;Right=chr2:205277997-205278445
chr2	CG	SV	205277997	205278445	95	-	.	ID=1146;Type=tandem-duplication;Left=chr2:205277326-205277886;Right=chr2:205277997-205278445
chr2	CG	SV	206439444	206440192	14	.	.	ID=3267;Type=deletion;Left=chr2:206439444-206440082+;Right=chr2:206439767-206440192+;Distance=323;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35551757 (chr2:206439427-206439750);Frequency=1.00
chr2	CG	SV	206439444	206440082	14	+	.	ID=3267;Type=deletion;Left=chr2:206439444-206440082;Right=chr2:206439767-206440192
chr2	CG	SV	206439767	206440192	14	+	.	ID=3267;Type=deletion;Left=chr2:206439444-206440082;Right=chr2:206439767-206440192
chr2	CG	SV	207852551	207855746	31	.	.	ID=3266;Type=deletion;Left=chr2:207852551-207853030+;Right=chr2:207855336-207855746+;Distance=2785;DiscordantMatePairAlignments=31;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	207852551	207853030	31	+	.	ID=3266;Type=deletion;Left=chr2:207852551-207853030;Right=chr2:207855336-207855746
chr2	CG	SV	207855336	207855746	31	+	.	ID=3266;Type=deletion;Left=chr2:207852551-207853030;Right=chr2:207855336-207855746
chr2	CG	SV	208182729	208185430	17	.	.	ID=3265;Type=deletion;Left=chr2:208182729-208183145+;Right=chr2:208185031-208185430+;Distance=2302;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=NM_001127395;NM_145280;RightGenes=NM_001127395;NM_145280;XRef=rs71844665 (chr2:208182727-208185029);Frequency=1.00
chr2	CG	SV	208182729	208183145	17	+	.	ID=3265;Type=deletion;Left=chr2:208182729-208183145;Right=chr2:208185031-208185430
chr2	CG	SV	208185031	208185430	17	+	.	ID=3265;Type=deletion;Left=chr2:208182729-208183145;Right=chr2:208185031-208185430
chr2	CG	SV	216798180	216800882	11	.	.	ID=3262;Type=deletion;Left=chr2:216798180-216798626+;Right=chr2:216800747-216800882+;Distance=2567;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67871446 (chr2:216798175-216800743);Frequency=1.00
chr2	CG	SV	216798180	216798626	11	+	.	ID=3262;Type=deletion;Left=chr2:216798180-216798626;Right=chr2:216800747-216800882
chr2	CG	SV	216800747	216800882	11	+	.	ID=3262;Type=deletion;Left=chr2:216798180-216798626;Right=chr2:216800747-216800882
chr2	CG	SV	222276315	222277375	13	.	.	ID=4031;Type=distal-duplication;Left=chr2:222276315-222276726+;Right=chr2:222277050-222277375-;Distance=1060;DiscordantMatePairAlignments=13;LeftRepeat=L1MC:LINE:L1;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	222276315	222276726	13	+	.	ID=4031;Type=distal-duplication;Left=chr2:222276315-222276726;Right=chr2:222277050-222277375
chr2	CG	SV	222277050	222277375	13	+	.	ID=4031;Type=distal-duplication;Left=chr2:222276315-222276726;Right=chr2:222277050-222277375
chr2	CG	SV	222276026	222277368	46	.	.	ID=463;Type=distal-duplication;Left=chr2:222276026-222276324-;Right=chr2:222277010-222277368+;Distance=686;DiscordantMatePairAlignments=46;LeftRepeat=L1MC:LINE:L1;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	222276026	222276324	46	-	.	ID=463;Type=distal-duplication;Left=chr2:222276026-222276324;Right=chr2:222277010-222277368
chr2	CG	SV	222277010	222277368	46	-	.	ID=463;Type=distal-duplication;Left=chr2:222276026-222276324;Right=chr2:222277010-222277368
chr2	CG	SV	223468429	223471502	151	.	.	ID=3260;Type=deletion;Left=chr2:223468429-223468930+;Right=chr2:223470922-223471502+;Distance=2493;DiscordantMatePairAlignments=151;LeftRepeat=;RightRepeat=;LeftGenes=NM_004457;NM_203372;RightGenes=NM_004457;NM_203372;XRef=rs67796571 (chr2:223468435-223470928);Frequency=0.94
chr2	CG	SV	223468429	223468930	151	+	.	ID=3260;Type=deletion;Left=chr2:223468429-223468930;Right=chr2:223470922-223471502
chr2	CG	SV	223470922	223471502	151	+	.	ID=3260;Type=deletion;Left=chr2:223468429-223468930;Right=chr2:223470922-223471502
chr2	CG	SV	225747827	225748829	100	.	.	ID=3258;Type=deletion;Left=chr2:225747827-225748366+;Right=chr2:225748304-225748829+;Distance=477;DiscordantMatePairAlignments=100;LeftRepeat=Self chain;RightRepeat=Alu:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	225747827	225748366	100	+	.	ID=3258;Type=deletion;Left=chr2:225747827-225748366;Right=chr2:225748304-225748829
chr2	CG	SV	225748304	225748829	100	+	.	ID=3258;Type=deletion;Left=chr2:225747827-225748366;Right=chr2:225748304-225748829
chr2	CG	SV	227930790	227931111	20	+	.	ID=3723;Type=interchromosomal;Left=chr2:227930790-227931111+;Right=chr15:91640353-91640718-;Distance=;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=L1MC:LINE:L1;LeftGenes=NM_020194;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	91640353	91640718	20	+	.	ID=3723;Type=interchromosomal;Left=chr2:227930790-227931111+;Right=chr15:91640353-91640718-;Distance=;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=L1MC:LINE:L1;LeftGenes=NM_020194;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	227977347	227978728	15	.	.	ID=3250;Type=deletion;Left=chr2:227977347-227977751+;Right=chr2:227978490-227978728+;Distance=1143;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	227977347	227977751	15	+	.	ID=3250;Type=deletion;Left=chr2:227977347-227977751;Right=chr2:227978490-227978728
chr2	CG	SV	227978490	227978728	15	+	.	ID=3250;Type=deletion;Left=chr2:227977347-227977751;Right=chr2:227978490-227978728
chr2	CG	SV	229157758	229160721	43	.	.	ID=3249;Type=deletion;Left=chr2:229157758-229158167+;Right=chr2:229160310-229160721+;Distance=2552;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	229157758	229158167	43	+	.	ID=3249;Type=deletion;Left=chr2:229157758-229158167;Right=chr2:229160310-229160721
chr2	CG	SV	229160310	229160721	43	+	.	ID=3249;Type=deletion;Left=chr2:229157758-229158167;Right=chr2:229160310-229160721
chr2	CG	SV	239074120	239074929	14	.	.	ID=3246;Type=deletion;Left=chr2:239074120-239074597+;Right=chr2:239074446-239074929+;Distance=326;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66510652 (chr2:239074120-239074446);Frequency=0.35
chr2	CG	SV	239074120	239074597	14	+	.	ID=3246;Type=deletion;Left=chr2:239074120-239074597;Right=chr2:239074446-239074929
chr2	CG	SV	239074446	239074929	14	+	.	ID=3246;Type=deletion;Left=chr2:239074120-239074597;Right=chr2:239074446-239074929
chr2	CG	SV	239165137	239166974	13	.	.	ID=3245;Type=deletion;Left=chr2:239165137-239165344+;Right=chr2:239166472-239166974+;Distance=1335;DiscordantMatePairAlignments=13;LeftRepeat=L1MB3:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67467394 (chr2:239165137-239166474);Frequency=0.29
chr2	CG	SV	239165137	239165344	13	+	.	ID=3245;Type=deletion;Left=chr2:239165137-239165344;Right=chr2:239166472-239166974
chr2	CG	SV	239166472	239166974	13	+	.	ID=3245;Type=deletion;Left=chr2:239165137-239165344;Right=chr2:239166472-239166974
chr3	CG	SV	4041937	4044943	69	.	.	ID=3236;Type=deletion;Left=chr3:4041937-4042329+;Right=chr3:4044568-4044943+;Distance=2631;DiscordantMatePairAlignments=69;LeftRepeat=(TA)n:Simple_repeat:Simple_repeat;Tandem AT;RightRepeat=MER33:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs71052646 (chr3:4041937-4044568);Frequency=1.00
chr3	CG	SV	4041937	4042329	69	+	.	ID=3236;Type=deletion;Left=chr3:4041937-4042329;Right=chr3:4044568-4044943
chr3	CG	SV	4044568	4044943	69	+	.	ID=3236;Type=deletion;Left=chr3:4041937-4042329;Right=chr3:4044568-4044943
chr3	CG	SV	7375040	7375777	14	.	.	ID=4030;Type=probable-inversion;Left=chr3:7375040-7375395+;Right=chr3:7375644-7375777-;Distance=737;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_000844;NM_181874;RightGenes=NM_000844;NM_181874;XRef=;Frequency=0.12
chr3	CG	SV	7375040	7375395	14	+	.	ID=4030;Type=probable-inversion;Left=chr3:7375040-7375395;Right=chr3:7375644-7375777
chr3	CG	SV	7375644	7375777	14	+	.	ID=4030;Type=probable-inversion;Left=chr3:7375040-7375395;Right=chr3:7375644-7375777
chr3	CG	SV	8575513	8576812	155	.	.	ID=1140;Type=tandem-duplication;Left=chr3:8575513-8576108-;Right=chr3:8576366-8576812-;Distance=704;DiscordantMatePairAlignments=155;LeftRepeat=MIR:SINE:MIR;RightRepeat=AluJo:SINE:Alu;LeftGenes=NM_014583;RightGenes=NM_014583;XRef=;Frequency=0.29
chr3	CG	SV	8575513	8576108	155	-	.	ID=1140;Type=tandem-duplication;Left=chr3:8575513-8576108;Right=chr3:8576366-8576812
chr3	CG	SV	8576366	8576812	155	-	.	ID=1140;Type=tandem-duplication;Left=chr3:8575513-8576108;Right=chr3:8576366-8576812
chr3	CG	SV	10201174	10204480	148	.	.	ID=3233;Type=deletion;Left=chr3:10201174-10201593+;Right=chr3:10203947-10204480+;Distance=2773;DiscordantMatePairAlignments=148;LeftRepeat=;RightRepeat=;LeftGenes=NM_001570;RightGenes=NM_001570;XRef=;Frequency=0.00
chr3	CG	SV	10201174	10201593	148	+	.	ID=3233;Type=deletion;Left=chr3:10201174-10201593;Right=chr3:10203947-10204480
chr3	CG	SV	10203947	10204480	148	+	.	ID=3233;Type=deletion;Left=chr3:10201174-10201593;Right=chr3:10203947-10204480
chr3	CG	SV	14107685	14109042	56	.	.	ID=3231;Type=deletion;Left=chr3:14107685-14108144+;Right=chr3:14108659-14109042+;Distance=974;DiscordantMatePairAlignments=56;LeftRepeat=LTR5_Hs:LTR:ERVK;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72362495 (chr3:14107685-14108659);Frequency=0.00
chr3	CG	SV	14107685	14108144	56	+	.	ID=3231;Type=deletion;Left=chr3:14107685-14108144;Right=chr3:14108659-14109042
chr3	CG	SV	14108659	14109042	56	+	.	ID=3231;Type=deletion;Left=chr3:14107685-14108144;Right=chr3:14108659-14109042
chr3	CG	SV	14131859	14133091	31	.	.	ID=4028;Type=distal-duplication;Left=chr3:14131859-14132291+;Right=chr3:14132958-14133091-;Distance=1232;DiscordantMatePairAlignments=31;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_001098502;NM_144636;RightGenes=NM_001098502;NM_144636;XRef=;Frequency=0.00
chr3	CG	SV	14131859	14132291	31	+	.	ID=4028;Type=distal-duplication;Left=chr3:14131859-14132291;Right=chr3:14132958-14133091
chr3	CG	SV	14132958	14133091	31	+	.	ID=4028;Type=distal-duplication;Left=chr3:14131859-14132291;Right=chr3:14132958-14133091
chr3	CG	SV	14131344	14133094	34	.	.	ID=461;Type=distal-duplication;Left=chr3:14131344-14131863-;Right=chr3:14132960-14133094+;Distance=1097;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001098502;NM_144636;RightGenes=NM_001098502;NM_144636;XRef=;Frequency=0.00
chr3	CG	SV	14131344	14131863	34	-	.	ID=461;Type=distal-duplication;Left=chr3:14131344-14131863;Right=chr3:14132960-14133094
chr3	CG	SV	14132960	14133094	34	-	.	ID=461;Type=distal-duplication;Left=chr3:14131344-14131863;Right=chr3:14132960-14133094
chr3	CG	SV	16214413	16216918	51	.	.	ID=3230;Type=deletion;Left=chr3:16214413-16214917+;Right=chr3:16216214-16216918+;Distance=1801;DiscordantMatePairAlignments=51;LeftRepeat=L3b:LINE:CR1;RightRepeat=LTR16A1:LTR:ERVL;LeftGenes=NM_054110;RightGenes=NM_054110;XRef=rs66489849 (chr3:16214413-16216214);Frequency=0.41
chr3	CG	SV	16214413	16214917	51	+	.	ID=3230;Type=deletion;Left=chr3:16214413-16214917;Right=chr3:16216214-16216918
chr3	CG	SV	16216214	16216918	51	+	.	ID=3230;Type=deletion;Left=chr3:16214413-16214917;Right=chr3:16216214-16216918
chr3	CG	SV	17695066	17700525	66	.	.	ID=3228;Type=deletion;Left=chr3:17695066-17695491+;Right=chr3:17700033-17700525+;Distance=4967;DiscordantMatePairAlignments=66;LeftRepeat=;RightRepeat=;LeftGenes=NM_001134380;NM_001134381;NM_014744;RightGenes=NM_001134380;NM_001134381;NM_014744;XRef=;Frequency=0.00
chr3	CG	SV	17695066	17695491	66	+	.	ID=3228;Type=deletion;Left=chr3:17695066-17695491;Right=chr3:17700033-17700525
chr3	CG	SV	17700033	17700525	66	+	.	ID=3228;Type=deletion;Left=chr3:17695066-17695491;Right=chr3:17700033-17700525
chr3	CG	SV	22067358	22073312	91	.	.	ID=3223;Type=deletion;Left=chr3:22067358-22067794+;Right=chr3:22072806-22073312+;Distance=5448;DiscordantMatePairAlignments=91;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67464987 (chr3:22067365-22072813);Frequency=0.88
chr3	CG	SV	22067358	22067794	91	+	.	ID=3223;Type=deletion;Left=chr3:22067358-22067794;Right=chr3:22072806-22073312
chr3	CG	SV	22072806	22073312	91	+	.	ID=3223;Type=deletion;Left=chr3:22067358-22067794;Right=chr3:22072806-22073312
chr3	CG	SV	22254335	22261665	24	.	.	ID=3222;Type=deletion;Left=chr3:22254335-22254870+;Right=chr3:22261421-22261665+;Distance=7086;DiscordantMatePairAlignments=24;LeftRepeat=AluSc:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr3	CG	SV	22254335	22254870	24	+	.	ID=3222;Type=deletion;Left=chr3:22254335-22254870;Right=chr3:22261421-22261665
chr3	CG	SV	22261421	22261665	24	+	.	ID=3222;Type=deletion;Left=chr3:22254335-22254870;Right=chr3:22261421-22261665
chr3	CG	SV	25005891	25007607	40	.	.	ID=3219;Type=deletion;Left=chr3:25005891-25006154+;Right=chr3:25007253-25007607+;Distance=1362;DiscordantMatePairAlignments=40;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=L1ME3B:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72404999 (chr3:25005891-25007246);Frequency=0.65
chr3	CG	SV	25005891	25006154	40	+	.	ID=3219;Type=deletion;Left=chr3:25005891-25006154;Right=chr3:25007253-25007607
chr3	CG	SV	25007253	25007607	40	+	.	ID=3219;Type=deletion;Left=chr3:25005891-25006154;Right=chr3:25007253-25007607
chr3	CG	SV	26414501	26421031	175	.	.	ID=3218;Type=deletion;Left=chr3:26414501-26415004+;Right=chr3:26420543-26421031+;Distance=6042;DiscordantMatePairAlignments=175;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71675168 (chr3:26414510-26420552);Frequency=0.15
chr3	CG	SV	26414501	26415004	175	+	.	ID=3218;Type=deletion;Left=chr3:26414501-26415004;Right=chr3:26420543-26421031
chr3	CG	SV	26420543	26421031	175	+	.	ID=3218;Type=deletion;Left=chr3:26414501-26415004;Right=chr3:26420543-26421031
chr3	CG	SV	28925219	28926069	41	.	.	ID=3217;Type=deletion;Left=chr3:28925219-28925644+;Right=chr3:28925769-28926069+;Distance=550;DiscordantMatePairAlignments=41;LeftRepeat=MSTA:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr3	CG	SV	28925219	28925644	41	+	.	ID=3217;Type=deletion;Left=chr3:28925219-28925644;Right=chr3:28925769-28926069
chr3	CG	SV	28925769	28926069	41	+	.	ID=3217;Type=deletion;Left=chr3:28925219-28925644;Right=chr3:28925769-28926069
chr3	CG	SV	30969741	30975402	90	.	.	ID=3216;Type=deletion;Left=chr3:30969741-30970305+;Right=chr3:30974833-30975402+;Distance=5092;DiscordantMatePairAlignments=90;LeftRepeat=MLT1G1:LTR:MaLR;RightRepeat=MLT2B4:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	30969741	30970305	90	+	.	ID=3216;Type=deletion;Left=chr3:30969741-30970305;Right=chr3:30974833-30975402
chr3	CG	SV	30974833	30975402	90	+	.	ID=3216;Type=deletion;Left=chr3:30969741-30970305;Right=chr3:30974833-30975402
chr3	CG	SV	32781826	32783282	17	.	.	ID=3213;Type=deletion;Left=chr3:32781826-32782318+;Right=chr3:32783140-32783282+;Distance=1314;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_015442;RightGenes=NM_015442;XRef=rs72274862 (chr3:32781540-32782847);Frequency=0.94
chr3	CG	SV	32781826	32782318	17	+	.	ID=3213;Type=deletion;Left=chr3:32781826-32782318;Right=chr3:32783140-32783282
chr3	CG	SV	32783140	32783282	17	+	.	ID=3213;Type=deletion;Left=chr3:32781826-32782318;Right=chr3:32783140-32783282
chr3	CG	SV	33528200	33529587	42	.	.	ID=3212;Type=deletion;Left=chr3:33528200-33528687+;Right=chr3:33529086-33529587+;Distance=886;DiscordantMatePairAlignments=42;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_015097;RightGenes=NM_015097;XRef=;Frequency=0.82
chr3	CG	SV	33528200	33528687	42	+	.	ID=3212;Type=deletion;Left=chr3:33528200-33528687;Right=chr3:33529086-33529587
chr3	CG	SV	33529086	33529587	42	+	.	ID=3212;Type=deletion;Left=chr3:33528200-33528687;Right=chr3:33529086-33529587
chr3	CG	SV	34094746	34095814	56	.	.	ID=3211;Type=deletion;Left=chr3:34094746-34095329+;Right=chr3:34095336-34095814+;Distance=590;DiscordantMatePairAlignments=56;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	34094746	34095329	56	+	.	ID=3211;Type=deletion;Left=chr3:34094746-34095329;Right=chr3:34095336-34095814
chr3	CG	SV	34095336	34095814	56	+	.	ID=3211;Type=deletion;Left=chr3:34094746-34095329;Right=chr3:34095336-34095814
chr3	CG	SV	39001389	39003337	40	.	.	ID=3210;Type=deletion;Left=chr3:39001389-39001904+;Right=chr3:39002877-39003337+;Distance=1488;DiscordantMatePairAlignments=40;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	39001389	39001904	40	+	.	ID=3210;Type=deletion;Left=chr3:39001389-39001904;Right=chr3:39002877-39003337
chr3	CG	SV	39002877	39003337	40	+	.	ID=3210;Type=deletion;Left=chr3:39001389-39001904;Right=chr3:39002877-39003337
chr3	CG	SV	41337146	41338115	69	.	.	ID=4027;Type=probable-inversion;Left=chr3:41337146-41337520+;Right=chr3:41337640-41338115-;Distance=969;DiscordantMatePairAlignments=69;LeftRepeat=AluSx:SINE:Alu;RightRepeat=MER50:LTR:ERV1;LeftGenes=NM_017886;RightGenes=NM_017886;XRef=;Frequency=0.18
chr3	CG	SV	41337146	41337520	69	+	.	ID=4027;Type=probable-inversion;Left=chr3:41337146-41337520;Right=chr3:41337640-41338115
chr3	CG	SV	41337640	41338115	69	+	.	ID=4027;Type=probable-inversion;Left=chr3:41337146-41337520;Right=chr3:41337640-41338115
chr3	CG	SV	42813377	42816403	53	.	.	ID=3209;Type=deletion;Left=chr3:42813377-42813730+;Right=chr3:42815831-42816403+;Distance=2454;DiscordantMatePairAlignments=53;LeftRepeat=;RightRepeat=LTR8:LTR:ERV1;LeftGenes=NM_001099668;NM_001099669;NM_014056;RightGenes=NM_001099668;NM_001099669;NM_014056;XRef=rs71052669 (chr3:42813377-42815831);Frequency=1.00
chr3	CG	SV	42813377	42813730	53	+	.	ID=3209;Type=deletion;Left=chr3:42813377-42813730;Right=chr3:42815831-42816403
chr3	CG	SV	42815831	42816403	53	+	.	ID=3209;Type=deletion;Left=chr3:42813377-42813730;Right=chr3:42815831-42816403
chr3	CG	SV	44715424	44717494	31	.	.	ID=458;Type=distal-duplication;Left=chr3:44715424-44715994-;Right=chr3:44717289-44717494+;Distance=1295;DiscordantMatePairAlignments=31;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	44715424	44715994	31	-	.	ID=458;Type=distal-duplication;Left=chr3:44715424-44715994;Right=chr3:44717289-44717494
chr3	CG	SV	44717289	44717494	31	-	.	ID=458;Type=distal-duplication;Left=chr3:44715424-44715994;Right=chr3:44717289-44717494
chr3	CG	SV	44716158	44717125	23	.	.	ID=4026;Type=distal-duplication;Left=chr3:44716158-44716474+;Right=chr3:44716834-44717125-;Distance=967;DiscordantMatePairAlignments=23;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	44716158	44716474	23	+	.	ID=4026;Type=distal-duplication;Left=chr3:44716158-44716474;Right=chr3:44716834-44717125
chr3	CG	SV	44716834	44717125	23	+	.	ID=4026;Type=distal-duplication;Left=chr3:44716158-44716474;Right=chr3:44716834-44717125
chr3	CG	SV	45584923	45585759	26	.	.	ID=3207;Type=deletion;Left=chr3:45584923-45585370+;Right=chr3:45585339-45585759+;Distance=416;DiscordantMatePairAlignments=26;LeftRepeat=L1PA14:LINE:L1;RightRepeat=L1PA14:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66706080 (chr3:45584811-45585223);Frequency=1.00
chr3	CG	SV	45584923	45585370	26	+	.	ID=3207;Type=deletion;Left=chr3:45584923-45585370;Right=chr3:45585339-45585759
chr3	CG	SV	45585339	45585759	26	+	.	ID=3207;Type=deletion;Left=chr3:45584923-45585370;Right=chr3:45585339-45585759
chr3	CG	SV	54216209	54216982	13	.	.	ID=3204;Type=deletion;Left=chr3:54216209-54216770+;Right=chr3:54216597-54216982+;Distance=388;DiscordantMatePairAlignments=13;LeftRepeat=MLT1J2:LTR:MaLR;RightRepeat=;LeftGenes=NM_018398;RightGenes=NM_018398;XRef=rs72558702 (chr3:54216208-54216596);Frequency=0.06
chr3	CG	SV	54216209	54216770	13	+	.	ID=3204;Type=deletion;Left=chr3:54216209-54216770;Right=chr3:54216597-54216982
chr3	CG	SV	54216597	54216982	13	+	.	ID=3204;Type=deletion;Left=chr3:54216209-54216770;Right=chr3:54216597-54216982
chr3	CG	SV	55000411	55000973	27	.	.	ID=1138;Type=tandem-duplication;Left=chr3:55000411-55000706-;Right=chr3:55000717-55000973-;Distance=267;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=;LeftGenes=NM_018398;RightGenes=NM_018398;XRef=;Frequency=0.00
chr3	CG	SV	55000411	55000706	27	-	.	ID=1138;Type=tandem-duplication;Left=chr3:55000411-55000706;Right=chr3:55000717-55000973
chr3	CG	SV	55000717	55000973	27	-	.	ID=1138;Type=tandem-duplication;Left=chr3:55000411-55000706;Right=chr3:55000717-55000973
chr3	CG	SV	63109897	63110786	38	.	.	ID=3200;Type=deletion;Left=chr3:63109897-63110469+;Right=chr3:63110350-63110786+;Distance=453;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs68090124 (chr3:63109897-63110350);Frequency=0.00
chr3	CG	SV	63109897	63110469	38	+	.	ID=3200;Type=deletion;Left=chr3:63109897-63110469;Right=chr3:63110350-63110786
chr3	CG	SV	63110350	63110786	38	+	.	ID=3200;Type=deletion;Left=chr3:63109897-63110469;Right=chr3:63110350-63110786
chr3	CG	SV	67576388	67579922	10	.	.	ID=3199;Type=deletion;Left=chr3:67576388-67576776+;Right=chr3:67579492-67579922+;Distance=3104;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_003848;RightGenes=NM_003848;XRef=rs71052690 (chr3:67576398-67579502);Frequency=1.00
chr3	CG	SV	67576388	67576776	10	+	.	ID=3199;Type=deletion;Left=chr3:67576388-67576776;Right=chr3:67579492-67579922
chr3	CG	SV	67579492	67579922	10	+	.	ID=3199;Type=deletion;Left=chr3:67576388-67576776;Right=chr3:67579492-67579922
chr3	CG	SV	75359579	75361908	60	.	.	ID=3196;Type=deletion;Left=chr3:75359579-75360048+;Right=chr3:75361610-75361908+;Distance=2031;DiscordantMatePairAlignments=60;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72396976 (chr3:75359579-75361608);Frequency=1.00
chr3	CG	SV	75359579	75360048	60	+	.	ID=3196;Type=deletion;Left=chr3:75359579-75360048;Right=chr3:75361610-75361908
chr3	CG	SV	75361610	75361908	60	+	.	ID=3196;Type=deletion;Left=chr3:75359579-75360048;Right=chr3:75361610-75361908
chr3	CG	SV	75870059	75870896	18	.	.	ID=3192;Type=deletion;Left=chr3:75870059-75870567+;Right=chr3:75870479-75870896+;Distance=420;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;Tandem period 84;RightRepeat=Self chain;Tandem period 84;LeftGenes=NM_001128223;RightGenes=NM_001128223;XRef=;Frequency=0.88
chr3	CG	SV	75870059	75870567	18	+	.	ID=3192;Type=deletion;Left=chr3:75870059-75870567;Right=chr3:75870479-75870896
chr3	CG	SV	75870479	75870896	18	+	.	ID=3192;Type=deletion;Left=chr3:75870059-75870567;Right=chr3:75870479-75870896
chr3	CG	SV	76097150	76097427	27	.	.	ID=1135;Type=tandem-duplication;Left=chr3:76097150-76097301-;Right=chr3:76097277-76097427-;Distance=126;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	76097150	76097301	27	-	.	ID=1135;Type=tandem-duplication;Left=chr3:76097150-76097301;Right=chr3:76097277-76097427
chr3	CG	SV	76097277	76097427	27	-	.	ID=1135;Type=tandem-duplication;Left=chr3:76097150-76097301;Right=chr3:76097277-76097427
chr3	CG	SV	76862196	76863073	19	.	.	ID=3190;Type=deletion;Left=chr3:76862196-76862552+;Right=chr3:76862896-76863073+;Distance=700;DiscordantMatePairAlignments=19;LeftRepeat=Tandem period 28;RightRepeat=Tandem period 28;LeftGenes=;RightGenes=;XRef=rs72171909 (chr3:76862015-76862575);Frequency=0.82
chr3	CG	SV	76862196	76862552	19	+	.	ID=3190;Type=deletion;Left=chr3:76862196-76862552;Right=chr3:76862896-76863073
chr3	CG	SV	76862896	76863073	19	+	.	ID=3190;Type=deletion;Left=chr3:76862196-76862552;Right=chr3:76862896-76863073
chr3	CG	SV	78425362	78426279	68	.	.	ID=3189;Type=deletion;Left=chr3:78425362-78425928+;Right=chr3:78425859-78426279+;Distance=497;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	78425362	78425928	68	+	.	ID=3189;Type=deletion;Left=chr3:78425362-78425928;Right=chr3:78425859-78426279
chr3	CG	SV	78425859	78426279	68	+	.	ID=3189;Type=deletion;Left=chr3:78425362-78425928;Right=chr3:78425859-78426279
chr3	CG	SV	84782272	84786020	16	.	.	ID=3188;Type=deletion;Left=chr3:84782272-84782672+;Right=chr3:84785631-84786020+;Distance=3359;DiscordantMatePairAlignments=16;LeftRepeat=L1MA9:LINE:L1;RightRepeat=L1MA9:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.30
chr3	CG	SV	84782272	84782672	16	+	.	ID=3188;Type=deletion;Left=chr3:84782272-84782672;Right=chr3:84785631-84786020
chr3	CG	SV	84785631	84786020	16	+	.	ID=3188;Type=deletion;Left=chr3:84782272-84782672;Right=chr3:84785631-84786020
chr3	CG	SV	89752736	89761244	48	.	.	ID=3187;Type=deletion;Left=chr3:89752736-89753128+;Right=chr3:89760777-89761244+;Distance=8041;DiscordantMatePairAlignments=48;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr3	CG	SV	89752736	89753128	48	+	.	ID=3187;Type=deletion;Left=chr3:89752736-89753128;Right=chr3:89760777-89761244
chr3	CG	SV	89760777	89761244	48	+	.	ID=3187;Type=deletion;Left=chr3:89752736-89753128;Right=chr3:89760777-89761244
chr3	CG	SV	96948458	96953689	35	.	.	ID=3185;Type=complex;Left=chr3:96948458-96948927+;Right=chr3:96953457-96953689+;Distance=4999;DiscordantMatePairAlignments=35;LeftRepeat=AluY:SINE:Alu;RightRepeat=L1M3e:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr3	CG	SV	96948458	96948927	35	+	.	ID=3185;Type=complex;Left=chr3:96948458-96948927;Right=chr3:96953457-96953689
chr3	CG	SV	96953457	96953689	35	+	.	ID=3185;Type=complex;Left=chr3:96948458-96948927;Right=chr3:96953457-96953689
chr3	CG	SV	96950287	96953690	137	.	.	ID=1133;Type=complex;Left=chr3:96950287-96950806-;Right=chr3:96953449-96953690-;Distance=2884;DiscordantMatePairAlignments=137;LeftRepeat=MLT2D:LTR:ERVL;RightRepeat=L1M3e:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr3	CG	SV	96950287	96950806	137	-	.	ID=1133;Type=complex;Left=chr3:96950287-96950806;Right=chr3:96953449-96953690
chr3	CG	SV	96953449	96953690	137	-	.	ID=1133;Type=complex;Left=chr3:96950287-96950806;Right=chr3:96953449-96953690
chr3	CG	SV	97533398	97535133	50	.	.	ID=3184;Type=deletion;Left=chr3:97533398-97533858+;Right=chr3:97534496-97535133+;Distance=1098;DiscordantMatePairAlignments=50;LeftRepeat=MER50B:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	97533398	97533858	50	+	.	ID=3184;Type=deletion;Left=chr3:97533398-97533858;Right=chr3:97534496-97535133
chr3	CG	SV	97534496	97535133	50	+	.	ID=3184;Type=deletion;Left=chr3:97533398-97533858;Right=chr3:97534496-97535133
chr3	CG	SV	100381753	100385575	45	.	.	ID=3181;Type=deletion;Left=chr3:100381753-100382109+;Right=chr3:100385082-100385575+;Distance=3329;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=L1ME2:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71056111 (chr3:100381750-100385079);Frequency=0.82
chr3	CG	SV	100381753	100382109	45	+	.	ID=3181;Type=deletion;Left=chr3:100381753-100382109;Right=chr3:100385082-100385575
chr3	CG	SV	100385082	100385575	45	+	.	ID=3181;Type=deletion;Left=chr3:100381753-100382109;Right=chr3:100385082-100385575
chr3	CG	SV	103766477	103767185	12	.	.	ID=3180;Type=deletion;Left=chr3:103766477-103767106+;Right=chr3:103766815-103767185+;Distance=338;DiscordantMatePairAlignments=12;LeftRepeat=Tandem T;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs10524232 (chr3:103766464-103766802);Frequency=0.76
chr3	CG	SV	103766477	103767106	12	+	.	ID=3180;Type=deletion;Left=chr3:103766477-103767106;Right=chr3:103766815-103767185
chr3	CG	SV	103766815	103767185	12	+	.	ID=3180;Type=deletion;Left=chr3:103766477-103767106;Right=chr3:103766815-103767185
chr3	CG	SV	108520647	108523546	167	.	.	ID=3178;Type=deletion;Left=chr3:108520647-108521138+;Right=chr3:108523025-108523546+;Distance=2378;DiscordantMatePairAlignments=167;LeftRepeat=HERV16:LTR:ERVL;RightRepeat=HERV16:LTR:ERVL;LeftGenes=NR_028302;RightGenes=NR_028302;XRef=;Frequency=0.29
chr3	CG	SV	108520647	108521138	167	+	.	ID=3178;Type=deletion;Left=chr3:108520647-108521138;Right=chr3:108523025-108523546
chr3	CG	SV	108523025	108523546	167	+	.	ID=3178;Type=deletion;Left=chr3:108520647-108521138;Right=chr3:108523025-108523546
chr3	CG	SV	110082096	110083112	12	.	.	ID=3177;Type=deletion;Left=chr3:110082096-110082660+;Right=chr3:110082948-110083112+;Distance=852;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;Tandem A;RightRepeat=L1MD1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	110082096	110082660	12	+	.	ID=3177;Type=deletion;Left=chr3:110082096-110082660;Right=chr3:110082948-110083112
chr3	CG	SV	110082948	110083112	12	+	.	ID=3177;Type=deletion;Left=chr3:110082096-110082660;Right=chr3:110082948-110083112
chr3	CG	SV	113950091	113950887	13	.	.	ID=3176;Type=deletion;Left=chr3:113950091-113950601+;Right=chr3:113950421-113950887+;Distance=330;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10528219 (chr3:113950072-113950402);Frequency=1.00
chr3	CG	SV	113950091	113950601	13	+	.	ID=3176;Type=deletion;Left=chr3:113950091-113950601;Right=chr3:113950421-113950887
chr3	CG	SV	113950421	113950887	13	+	.	ID=3176;Type=deletion;Left=chr3:113950091-113950601;Right=chr3:113950421-113950887
chr3	CG	SV	121376675	121377680	46	.	.	ID=3168;Type=deletion;Left=chr3:121376675-121377199+;Right=chr3:121377135-121377680+;Distance=460;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=NM_001168271;NM_153002;RightGenes=NM_001168271;NM_153002;XRef=rs67310162 (chr3:121376675-121377135);Frequency=1.00
chr3	CG	SV	121376675	121377199	46	+	.	ID=3168;Type=deletion;Left=chr3:121376675-121377199;Right=chr3:121377135-121377680
chr3	CG	SV	121377135	121377680	46	+	.	ID=3168;Type=deletion;Left=chr3:121376675-121377199;Right=chr3:121377135-121377680
chr3	CG	SV	121644334	121647972	23	.	.	ID=3167;Type=deletion;Left=chr3:121644334-121644898+;Right=chr3:121647641-121647972+;Distance=3307;DiscordantMatePairAlignments=23;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_007085;RightGenes=NM_007085;XRef=;Frequency=0.00
chr3	CG	SV	121644334	121644898	23	+	.	ID=3167;Type=deletion;Left=chr3:121644334-121644898;Right=chr3:121647641-121647972
chr3	CG	SV	121647641	121647972	23	+	.	ID=3167;Type=deletion;Left=chr3:121644334-121644898;Right=chr3:121647641-121647972
chr3	CG	SV	126372743	126374039	24	.	.	ID=3165;Type=deletion;Left=chr3:126372743-126373008+;Right=chr3:126373513-126374039+;Distance=770;DiscordantMatePairAlignments=24;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_024628;RightGenes=NM_024628;XRef=rs66464009 (chr3:126372743-126373513);Frequency=1.00
chr3	CG	SV	126372743	126373008	24	+	.	ID=3165;Type=deletion;Left=chr3:126372743-126373008;Right=chr3:126373513-126374039
chr3	CG	SV	126373513	126374039	24	+	.	ID=3165;Type=deletion;Left=chr3:126372743-126373008;Right=chr3:126373513-126374039
chr3	CG	SV	130606044	130606564	73	+	.	ID=4015;Type=distal-duplication-by-mobile-element;Left=chr3:130606044-130606564+;Right=chr6:15298777-15299033-;Distance=;DiscordantMatePairAlignments=73;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_207307;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	15298777	15299033	73	+	.	ID=4015;Type=distal-duplication-by-mobile-element;Left=chr3:130606044-130606564+;Right=chr6:15298777-15299033-;Distance=;DiscordantMatePairAlignments=73;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_207307;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	131830267	131836312	128	.	.	ID=3162;Type=deletion;Left=chr3:131830267-131830723+;Right=chr3:131835809-131836312+;Distance=5542;DiscordantMatePairAlignments=128;LeftRepeat=;RightRepeat=;LeftGenes=NM_001102608;RightGenes=NM_001102608;XRef=rs72337912 (chr3:131830267-131835809);Frequency=0.35
chr3	CG	SV	131830267	131830723	128	+	.	ID=3162;Type=deletion;Left=chr3:131830267-131830723;Right=chr3:131835809-131836312
chr3	CG	SV	131835809	131836312	128	+	.	ID=3162;Type=deletion;Left=chr3:131830267-131830723;Right=chr3:131835809-131836312
chr3	CG	SV	133471884	133478103	55	.	.	ID=3159;Type=deletion;Left=chr3:133471884-133472347+;Right=chr3:133477843-133478103+;Distance=5959;DiscordantMatePairAlignments=55;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67599226 (chr3:133471815-133477774);Frequency=0.41
chr3	CG	SV	133471884	133472347	55	+	.	ID=3159;Type=deletion;Left=chr3:133471884-133472347;Right=chr3:133477843-133478103
chr3	CG	SV	133477843	133478103	55	+	.	ID=3159;Type=deletion;Left=chr3:133471884-133472347;Right=chr3:133477843-133478103
chr3	CG	SV	136156597	136157805	226	.	.	ID=3158;Type=deletion;Left=chr3:136156597-136157290+;Right=chr3:136157250-136157805+;Distance=653;DiscordantMatePairAlignments=226;LeftRepeat=;RightRepeat=;LeftGenes=NM_004441;RightGenes=NM_004441;XRef=rs66977021 (chr3:136156606-136157259);Frequency=0.82
chr3	CG	SV	136156597	136157290	226	+	.	ID=3158;Type=deletion;Left=chr3:136156597-136157290;Right=chr3:136157250-136157805
chr3	CG	SV	136157250	136157805	226	+	.	ID=3158;Type=deletion;Left=chr3:136156597-136157290;Right=chr3:136157250-136157805
chr3	CG	SV	142885834	142887544	17	.	.	ID=3156;Type=deletion;Left=chr3:142885834-142886308+;Right=chr3:142887316-142887544+;Distance=1482;DiscordantMatePairAlignments=17;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	142885834	142886308	17	+	.	ID=3156;Type=deletion;Left=chr3:142885834-142886308;Right=chr3:142887316-142887544
chr3	CG	SV	142887316	142887544	17	+	.	ID=3156;Type=deletion;Left=chr3:142885834-142886308;Right=chr3:142887316-142887544
chr3	CG	SV	147867880	147873313	14	.	.	ID=3153;Type=complex;Left=chr3:147867880-147868056+;Right=chr3:147873094-147873313+;Distance=5214;DiscordantMatePairAlignments=14;LeftRepeat=L2:LINE:L2;RightRepeat=L1PA16:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	147867880	147868056	14	+	.	ID=3153;Type=complex;Left=chr3:147867880-147868056;Right=chr3:147873094-147873313
chr3	CG	SV	147873094	147873313	14	+	.	ID=3153;Type=complex;Left=chr3:147867880-147868056;Right=chr3:147873094-147873313
chr3	CG	SV	147867882	147877857	62	.	.	ID=3154;Type=complex;Left=chr3:147867882-147868330+;Right=chr3:147877553-147877857+;Distance=9671;DiscordantMatePairAlignments=62;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs72156653 (chr3:147867880-147877553);Frequency=0.94
chr3	CG	SV	147867882	147868330	62	+	.	ID=3154;Type=complex;Left=chr3:147867882-147868330;Right=chr3:147877553-147877857
chr3	CG	SV	147877553	147877857	62	+	.	ID=3154;Type=complex;Left=chr3:147867882-147868330;Right=chr3:147877553-147877857
chr3	CG	SV	147872656	147877855	50	.	.	ID=1128;Type=complex;Left=chr3:147872656-147873094-;Right=chr3:147877546-147877855-;Distance=4761;DiscordantMatePairAlignments=50;LeftRepeat=L1PA16:LINE:L1;RightRepeat=THE1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	147872656	147873094	50	-	.	ID=1128;Type=complex;Left=chr3:147872656-147873094;Right=chr3:147877546-147877855
chr3	CG	SV	147877546	147877855	50	-	.	ID=1128;Type=complex;Left=chr3:147872656-147873094;Right=chr3:147877546-147877855
chr3	CG	SV	149167750	149168186	12	.	.	ID=1127;Type=tandem-duplication;Left=chr3:149167750-149167982-;Right=chr3:149167995-149168186-;Distance=204;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr3	CG	SV	149167750	149167982	12	-	.	ID=1127;Type=tandem-duplication;Left=chr3:149167750-149167982;Right=chr3:149167995-149168186
chr3	CG	SV	149167995	149168186	12	-	.	ID=1127;Type=tandem-duplication;Left=chr3:149167750-149167982;Right=chr3:149167995-149168186
chr3	CG	SV	149319637	149323123	38	.	.	ID=3152;Type=deletion;Left=chr3:149319637-149319950+;Right=chr3:149322625-149323123+;Distance=2988;DiscordantMatePairAlignments=38;LeftRepeat=L1M2c:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	149319637	149319950	38	+	.	ID=3152;Type=deletion;Left=chr3:149319637-149319950;Right=chr3:149322625-149323123
chr3	CG	SV	149322625	149323123	38	+	.	ID=3152;Type=deletion;Left=chr3:149319637-149319950;Right=chr3:149322625-149323123
chr3	CG	SV	149764130	149768544	39	.	.	ID=3151;Type=deletion;Left=chr3:149764130-149764464+;Right=chr3:149768115-149768544+;Distance=3985;DiscordantMatePairAlignments=39;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67645862 (chr3:149764124-149768109);Frequency=0.71
chr3	CG	SV	149764130	149764464	39	+	.	ID=3151;Type=deletion;Left=chr3:149764130-149764464;Right=chr3:149768115-149768544
chr3	CG	SV	149768115	149768544	39	+	.	ID=3151;Type=deletion;Left=chr3:149764130-149764464;Right=chr3:149768115-149768544
chr3	CG	SV	150327076	150327724	10	.	.	ID=3149;Type=deletion;Left=chr3:150327076-150327654+;Right=chr3:150327404-150327724+;Distance=328;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10525495 (chr3:150327062-150327390);Frequency=1.00
chr3	CG	SV	150327076	150327654	10	+	.	ID=3149;Type=deletion;Left=chr3:150327076-150327654;Right=chr3:150327404-150327724
chr3	CG	SV	150327404	150327724	10	+	.	ID=3149;Type=deletion;Left=chr3:150327076-150327654;Right=chr3:150327404-150327724
chr3	CG	SV	153794417	153796307	96	.	.	ID=3148;Type=deletion;Left=chr3:153794417-153795024+;Right=chr3:153795849-153796307+;Distance=1432;DiscordantMatePairAlignments=96;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67110903 (chr3:153794413-153795845);Frequency=1.00
chr3	CG	SV	153794417	153795024	96	+	.	ID=3148;Type=deletion;Left=chr3:153794417-153795024;Right=chr3:153795849-153796307
chr3	CG	SV	153795849	153796307	96	+	.	ID=3148;Type=deletion;Left=chr3:153794417-153795024;Right=chr3:153795849-153796307
chr3	CG	SV	157574864	157576890	45	.	.	ID=3144;Type=deletion;Left=chr3:157574864-157575350+;Right=chr3:157576385-157576890+;Distance=1521;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_003471;NM_172159;NM_172160;RightGenes=NM_003471;NM_172159;NM_172160;XRef=rs71667706 (chr3:157574868-157576385);Frequency=0.41
chr3	CG	SV	157574864	157575350	45	+	.	ID=3144;Type=deletion;Left=chr3:157574864-157575350;Right=chr3:157576385-157576890
chr3	CG	SV	157576385	157576890	45	+	.	ID=3144;Type=deletion;Left=chr3:157574864-157575350;Right=chr3:157576385-157576890
chr3	CG	SV	160739715	160740818	77	.	.	ID=3142;Type=deletion;Left=chr3:160739715-160740129+;Right=chr3:160740384-160740818+;Distance=669;DiscordantMatePairAlignments=77;LeftRepeat=;RightRepeat=;LeftGenes=NM_014575;RightGenes=NM_014575;XRef=rs67205889 (chr3:160739715-160740383);Frequency=0.59
chr3	CG	SV	160739715	160740129	77	+	.	ID=3142;Type=deletion;Left=chr3:160739715-160740129;Right=chr3:160740384-160740818
chr3	CG	SV	160740384	160740818	77	+	.	ID=3142;Type=deletion;Left=chr3:160739715-160740129;Right=chr3:160740384-160740818
chr3	CG	SV	163994828	164109261	22	.	.	ID=3139;Type=deletion;Left=chr3:163994828-163995251+;Right=chr3:164109029-164109261+;Distance=114201;DiscordantMatePairAlignments=22;LeftRepeat=Tigger1:DNA:MER2_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr3	CG	SV	163994828	163995251	22	+	.	ID=3139;Type=deletion;Left=chr3:163994828-163995251;Right=chr3:164109029-164109261
chr3	CG	SV	164109029	164109261	22	+	.	ID=3139;Type=deletion;Left=chr3:163994828-163995251;Right=chr3:164109029-164109261
chr3	CG	SV	164008436	164030335	57	.	.	ID=4020;Type=complex;Left=chr3:164008436-164008914+;Right=chr3:164029806-164030335-;Distance=21899;DiscordantMatePairAlignments=57;LeftRepeat=MIR:SINE:MIR;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr3	CG	SV	164008436	164008914	57	+	.	ID=4020;Type=complex;Left=chr3:164008436-164008914;Right=chr3:164029806-164030335
chr3	CG	SV	164029806	164030335	57	+	.	ID=4020;Type=complex;Left=chr3:164008436-164008914;Right=chr3:164029806-164030335
chr3	CG	SV	164027605	164030623	19	.	.	ID=453;Type=complex;Left=chr3:164027605-164028056-;Right=chr3:164030352-164030623+;Distance=2296;DiscordantMatePairAlignments=19;LeftRepeat=THE1C:LTR:MaLR;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr3	CG	SV	164027605	164028056	19	-	.	ID=453;Type=complex;Left=chr3:164027605-164028056;Right=chr3:164030352-164030623
chr3	CG	SV	164030352	164030623	19	-	.	ID=453;Type=complex;Left=chr3:164027605-164028056;Right=chr3:164030352-164030623
chr3	CG	SV	164247596	164252161	36	.	.	ID=3138;Type=deletion;Left=chr3:164247596-164247870+;Right=chr3:164251779-164252161+;Distance=4183;DiscordantMatePairAlignments=36;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Tandem TG;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67657160 (chr3:164247595-164251776);Frequency=0.88
chr3	CG	SV	164247596	164247870	36	+	.	ID=3138;Type=deletion;Left=chr3:164247596-164247870;Right=chr3:164251779-164252161
chr3	CG	SV	164251779	164252161	36	+	.	ID=3138;Type=deletion;Left=chr3:164247596-164247870;Right=chr3:164251779-164252161
chr3	CG	SV	179262839	179264580	56	.	.	ID=3136;Type=deletion;Left=chr3:179262839-179263307+;Right=chr3:179264084-179264580+;Distance=1245;DiscordantMatePairAlignments=56;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	179262839	179263307	56	+	.	ID=3136;Type=deletion;Left=chr3:179262839-179263307;Right=chr3:179264084-179264580
chr3	CG	SV	179264084	179264580	56	+	.	ID=3136;Type=deletion;Left=chr3:179262839-179263307;Right=chr3:179264084-179264580
chr3	CG	SV	180032827	180034106	104	.	.	ID=3135;Type=deletion;Left=chr3:180032827-180033277+;Right=chr3:180033568-180034106+;Distance=741;DiscordantMatePairAlignments=104;LeftRepeat=L1ME3B:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_005832;NM_181361;RightGenes=NM_005832;NM_181361;XRef=rs71056158 (chr3:180032827-180033568);Frequency=0.94
chr3	CG	SV	180032827	180033277	104	+	.	ID=3135;Type=deletion;Left=chr3:180032827-180033277;Right=chr3:180033568-180034106
chr3	CG	SV	180033568	180034106	104	+	.	ID=3135;Type=deletion;Left=chr3:180032827-180033277;Right=chr3:180033568-180034106
chr3	CG	SV	181137035	181138044	12	.	.	ID=3133;Type=deletion;Left=chr3:181137035-181137514+;Right=chr3:181137500-181138044+;Distance=465;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=NM_016559;RightGenes=NM_016559;XRef=rs66526785 (chr3:181137035-181137500);Frequency=0.94
chr3	CG	SV	181137035	181137514	12	+	.	ID=3133;Type=deletion;Left=chr3:181137035-181137514;Right=chr3:181137500-181138044
chr3	CG	SV	181137500	181138044	12	+	.	ID=3133;Type=deletion;Left=chr3:181137035-181137514;Right=chr3:181137500-181138044
chr3	CG	SV	182979201	182981250	23	.	.	ID=452;Type=probable-inversion;Left=chr3:182979201-182979933-;Right=chr3:182980765-182981250+;Distance=832;DiscordantMatePairAlignments=23;LeftRepeat=AluSg/x:SINE:Alu;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	182979201	182979933	23	-	.	ID=452;Type=probable-inversion;Left=chr3:182979201-182979933;Right=chr3:182980765-182981250
chr3	CG	SV	182980765	182981250	23	-	.	ID=452;Type=probable-inversion;Left=chr3:182979201-182979933;Right=chr3:182980765-182981250
chr3	CG	SV	185359278	185360377	13	.	.	ID=3132;Type=deletion;Left=chr3:185359278-185359462+;Right=chr3:185359881-185360377+;Distance=603;DiscordantMatePairAlignments=13;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_004423;RightGenes=NM_004423;XRef=;Frequency=0.76
chr3	CG	SV	185359278	185359462	13	+	.	ID=3132;Type=deletion;Left=chr3:185359278-185359462;Right=chr3:185359881-185360377
chr3	CG	SV	185359881	185360377	13	+	.	ID=3132;Type=deletion;Left=chr3:185359278-185359462;Right=chr3:185359881-185360377
chr3	CG	SV	188063727	188068481	49	.	.	ID=3131;Type=deletion;Left=chr3:188063727-188064011+;Right=chr3:188067996-188068481+;Distance=4269;DiscordantMatePairAlignments=49;LeftRepeat=Tandem TCCCTC;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67678013 (chr3:188063727-188067996);Frequency=1.00
chr3	CG	SV	188063727	188064011	49	+	.	ID=3131;Type=deletion;Left=chr3:188063727-188064011;Right=chr3:188067996-188068481
chr3	CG	SV	188067996	188068481	49	+	.	ID=3131;Type=deletion;Left=chr3:188063727-188064011;Right=chr3:188067996-188068481
chr3	CG	SV	190574684	190583182	73	.	.	ID=3129;Type=deletion;Left=chr3:190574684-190575115+;Right=chr3:190582770-190583182+;Distance=8086;DiscordantMatePairAlignments=73;LeftRepeat=;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr3	CG	SV	190574684	190575115	73	+	.	ID=3129;Type=deletion;Left=chr3:190574684-190575115;Right=chr3:190582770-190583182
chr3	CG	SV	190582770	190583182	73	+	.	ID=3129;Type=deletion;Left=chr3:190574684-190575115;Right=chr3:190582770-190583182
chr3	CG	SV	190846116	190853885	11	.	.	ID=3128;Type=deletion;Left=chr3:190846116-190846474+;Right=chr3:190853595-190853885+;Distance=7479;DiscordantMatePairAlignments=11;LeftRepeat=L1PA6:LINE:L1;RightRepeat=;LeftGenes=NM_001114978;NM_001114979;NM_003722;RightGenes=NM_001114978;NM_001114979;NM_003722;XRef=rs67559262 (chr3:190846114-190853593);Frequency=0.20
chr3	CG	SV	190846116	190846474	11	+	.	ID=3128;Type=deletion;Left=chr3:190846116-190846474;Right=chr3:190853595-190853885
chr3	CG	SV	190853595	190853885	11	+	.	ID=3128;Type=deletion;Left=chr3:190846116-190846474;Right=chr3:190853595-190853885
chr3	CG	SV	191220042	191223652	30	.	.	ID=3127;Type=deletion;Left=chr3:191220042-191220648+;Right=chr3:191223222-191223652+;Distance=3180;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=MER5A:DNA:MER1_type;LeftGenes=NM_001134418;NM_018192;RightGenes=NM_001134418;NM_018192;XRef=rs66785223 (chr3:191220042-191223222);Frequency=0.65
chr3	CG	SV	191220042	191220648	30	+	.	ID=3127;Type=deletion;Left=chr3:191220042-191220648;Right=chr3:191223222-191223652
chr3	CG	SV	191223222	191223652	30	+	.	ID=3127;Type=deletion;Left=chr3:191220042-191220648;Right=chr3:191223222-191223652
chr3	CG	SV	192316264	192316712	46	.	.	ID=4019;Type=probable-inversion;Left=chr3:192316264-192316641+;Right=chr3:192316465-192316712-;Distance=448;DiscordantMatePairAlignments=46;LeftRepeat=(TA)n:Simple_repeat:Simple_repeat;Tandem period 14;RightRepeat=LTR33:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr3	CG	SV	192316264	192316641	46	+	.	ID=4019;Type=probable-inversion;Left=chr3:192316264-192316641;Right=chr3:192316465-192316712
chr3	CG	SV	192316465	192316712	46	+	.	ID=4019;Type=probable-inversion;Left=chr3:192316264-192316641;Right=chr3:192316465-192316712
chr3	CG	SV	193338792	193339628	12	.	.	ID=3126;Type=deletion;Left=chr3:193338792-193339303+;Right=chr3:193339130-193339628+;Distance=338;DiscordantMatePairAlignments=12;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10530679 (chr3:193338779-193339117);Frequency=1.00
chr3	CG	SV	193338792	193339303	12	+	.	ID=3126;Type=deletion;Left=chr3:193338792-193339303;Right=chr3:193339130-193339628
chr3	CG	SV	193339130	193339628	12	+	.	ID=3126;Type=deletion;Left=chr3:193338792-193339303;Right=chr3:193339130-193339628
chr3	CG	SV	193605462	193606551	70	.	.	ID=3124;Type=deletion;Left=chr3:193605462-193605943+;Right=chr3:193606156-193606551+;Distance=694;DiscordantMatePairAlignments=70;LeftRepeat=;RightRepeat=;LeftGenes=NM_004113;NM_021032;RightGenes=NM_004113;NM_021032;XRef=rs72014933 (chr3:193605462-193606151);Frequency=0.00
chr3	CG	SV	193605462	193605943	70	+	.	ID=3124;Type=deletion;Left=chr3:193605462-193605943;Right=chr3:193606156-193606551
chr3	CG	SV	193606156	193606551	70	+	.	ID=3124;Type=deletion;Left=chr3:193605462-193605943;Right=chr3:193606156-193606551
chr3	CG	SV	194227049	194228162	56	.	.	ID=3123;Type=deletion;Left=chr3:194227049-194227318+;Right=chr3:194227589-194228162+;Distance=540;DiscordantMatePairAlignments=56;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66924869 (chr3:194227047-194227587);Frequency=0.59
chr3	CG	SV	194227049	194227318	56	+	.	ID=3123;Type=deletion;Left=chr3:194227049-194227318;Right=chr3:194227589-194228162
chr3	CG	SV	194227589	194228162	56	+	.	ID=3123;Type=deletion;Left=chr3:194227049-194227318;Right=chr3:194227589-194228162
chr3	CG	SV	194358026	194368604	139	.	.	ID=3122;Type=deletion;Left=chr3:194358026-194358634+;Right=chr3:194368102-194368604+;Distance=10076;DiscordantMatePairAlignments=139;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	194358026	194358634	139	+	.	ID=3122;Type=deletion;Left=chr3:194358026-194358634;Right=chr3:194368102-194368604
chr3	CG	SV	194368102	194368604	139	+	.	ID=3122;Type=deletion;Left=chr3:194358026-194358634;Right=chr3:194368102-194368604
chr3	CG	SV	194618158	194626022	19	.	.	ID=3121;Type=deletion;Left=chr3:194618158-194618517+;Right=chr3:194625630-194626022+;Distance=7472;DiscordantMatePairAlignments=19;LeftRepeat=L1MB4:LINE:L1;RightRepeat=L1MA6:LINE:L1;LeftGenes=NM_032279;RightGenes=NM_032279;XRef=rs71819150 (chr3:194618158-194625630);Frequency=0.00
chr3	CG	SV	194618158	194618517	19	+	.	ID=3121;Type=deletion;Left=chr3:194618158-194618517;Right=chr3:194625630-194626022
chr3	CG	SV	194625630	194626022	19	+	.	ID=3121;Type=deletion;Left=chr3:194618158-194618517;Right=chr3:194625630-194626022
chr3	CG	SV	195602461	195603696	160	.	.	ID=3120;Type=deletion;Left=chr3:195602461-195602820+;Right=chr3:195603218-195603696+;Distance=757;DiscordantMatePairAlignments=160;LeftRepeat=SVA:Other:Other;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67160479 (chr3:195602461-195603218);Frequency=0.41
chr3	CG	SV	195602461	195602820	160	+	.	ID=3120;Type=deletion;Left=chr3:195602461-195602820;Right=chr3:195603218-195603696
chr3	CG	SV	195603218	195603696	160	+	.	ID=3120;Type=deletion;Left=chr3:195602461-195602820;Right=chr3:195603218-195603696
chr3	CG	SV	195865442	195866298	15	.	.	ID=3119;Type=deletion;Left=chr3:195865442-195865991+;Right=chr3:195865834-195866298+;Distance=392;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem period 28;RightRepeat=Self chain;Tandem period 28;LeftGenes=NM_018385;RightGenes=NM_018385;XRef=rs10705443 (chr3:195865374-195865766);Frequency=0.94
chr3	CG	SV	195865442	195865991	15	+	.	ID=3119;Type=deletion;Left=chr3:195865442-195865991;Right=chr3:195865834-195866298
chr3	CG	SV	195865834	195866298	15	+	.	ID=3119;Type=deletion;Left=chr3:195865442-195865991;Right=chr3:195865834-195866298
chr3	CG	SV	195880163	195882045	32	.	.	ID=3118;Type=deletion;Left=chr3:195880163-195880720+;Right=chr3:195881771-195882045+;Distance=1608;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71056174 (chr3:195880028-195881636);Frequency=0.88
chr3	CG	SV	195880163	195880720	32	+	.	ID=3118;Type=deletion;Left=chr3:195880163-195880720;Right=chr3:195881771-195882045
chr3	CG	SV	195881771	195882045	32	+	.	ID=3118;Type=deletion;Left=chr3:195880163-195880720;Right=chr3:195881771-195882045
chr3	CG	SV	196024582	196027725	106	.	.	ID=3117;Type=distal-duplication;Left=chr3:196024582-196025082+;Right=chr3:196027548-196027725+;Distance=2966;DiscordantMatePairAlignments=106;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72236752 (chr3:196024579-196027545);Frequency=0.76
chr3	CG	SV	196024582	196025082	106	+	.	ID=3117;Type=distal-duplication;Left=chr3:196024582-196025082;Right=chr3:196027548-196027725
chr3	CG	SV	196027548	196027725	106	+	.	ID=3117;Type=distal-duplication;Left=chr3:196024582-196025082;Right=chr3:196027548-196027725
chr3	CG	SV	196023978	196027718	134	.	.	ID=1126;Type=distal-duplication;Left=chr3:196023978-196024598-;Right=chr3:196027542-196027718-;Distance=3120;DiscordantMatePairAlignments=134;LeftRepeat=;RightRepeat=Tandem period 120;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr3	CG	SV	196023978	196024598	134	-	.	ID=1126;Type=distal-duplication;Left=chr3:196023978-196024598;Right=chr3:196027542-196027718
chr3	CG	SV	196027542	196027718	134	-	.	ID=1126;Type=distal-duplication;Left=chr3:196023978-196024598;Right=chr3:196027542-196027718
chr3	CG	SV	196267454	196269109	34	.	.	ID=3116;Type=deletion;Left=chr3:196267454-196267873+;Right=chr3:196268764-196269109+;Distance=1310;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;Tandem period 55;RightRepeat=Self chain;Tandem period 23;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr3	CG	SV	196267454	196267873	34	+	.	ID=3116;Type=deletion;Left=chr3:196267454-196267873;Right=chr3:196268764-196269109
chr3	CG	SV	196268764	196269109	34	+	.	ID=3116;Type=deletion;Left=chr3:196267454-196267873;Right=chr3:196268764-196269109
chr3	CG	SV	196911882	196912131	15	.	.	ID=1125;Type=tandem-duplication;Left=chr3:196911882-196912001-;Right=chr3:196912037-196912131-;Distance=130;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem period 66;Tigger3b:DNA:MER2_type;RightRepeat=Self chain;Tigger3b:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr3	CG	SV	196911882	196912001	15	-	.	ID=1125;Type=tandem-duplication;Left=chr3:196911882-196912001;Right=chr3:196912037-196912131
chr3	CG	SV	196912037	196912131	15	-	.	ID=1125;Type=tandem-duplication;Left=chr3:196911882-196912001;Right=chr3:196912037-196912131
chr4	CG	SV	1495635	1497370	68	.	.	ID=3112;Type=deletion;Left=chr4:1495635-1496112+;Right=chr4:1497030-1497370+;Distance=1395;DiscordantMatePairAlignments=68;LeftRepeat=Self chain;Tandem period 93;RightRepeat=Self chain;Tandem period 93;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr4	CG	SV	1495635	1496112	68	+	.	ID=3112;Type=deletion;Left=chr4:1495635-1496112;Right=chr4:1497030-1497370
chr4	CG	SV	1497030	1497370	68	+	.	ID=3112;Type=deletion;Left=chr4:1495635-1496112;Right=chr4:1497030-1497370
chr4	CG	SV	1517967	1519292	14	.	.	ID=3111;Type=deletion;Left=chr4:1517967-1518325+;Right=chr4:1519050-1519292+;Distance=1083;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 33;RightRepeat=Self chain;Tandem period 33;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	1517967	1518325	14	+	.	ID=3111;Type=deletion;Left=chr4:1517967-1518325;Right=chr4:1519050-1519292
chr4	CG	SV	1519050	1519292	14	+	.	ID=3111;Type=deletion;Left=chr4:1517967-1518325;Right=chr4:1519050-1519292
chr4	CG	SV	3583174	3588585	55	.	.	ID=3109;Type=deletion;Left=chr4:3583174-3583717+;Right=chr4:3588419-3588585+;Distance=5245;DiscordantMatePairAlignments=55;LeftRepeat=Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	3583174	3583717	55	+	.	ID=3109;Type=deletion;Left=chr4:3583174-3583717;Right=chr4:3588419-3588585
chr4	CG	SV	3588419	3588585	55	+	.	ID=3109;Type=deletion;Left=chr4:3583174-3583717;Right=chr4:3588419-3588585
chr4	CG	SV	6733297	6737314	38	.	.	ID=3108;Type=deletion;Left=chr4:6733297-6733681+;Right=chr4:6736765-6737314+;Distance=3468;DiscordantMatePairAlignments=38;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr4	CG	SV	6733297	6733681	38	+	.	ID=3108;Type=deletion;Left=chr4:6733297-6733681;Right=chr4:6736765-6737314
chr4	CG	SV	6736765	6737314	38	+	.	ID=3108;Type=deletion;Left=chr4:6733297-6733681;Right=chr4:6736765-6737314
chr4	CG	SV	18666569	18667480	19	.	.	ID=3101;Type=deletion;Left=chr4:18666569-18667007+;Right=chr4:18667067-18667480+;Distance=498;DiscordantMatePairAlignments=19;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr4	CG	SV	18666569	18667007	19	+	.	ID=3101;Type=deletion;Left=chr4:18666569-18667007;Right=chr4:18667067-18667480
chr4	CG	SV	18667067	18667480	19	+	.	ID=3101;Type=deletion;Left=chr4:18666569-18667007;Right=chr4:18667067-18667480
chr4	CG	SV	18688557	18695076	76	.	.	ID=3100;Type=deletion;Left=chr4:18688557-18689007+;Right=chr4:18694657-18695076+;Distance=6100;DiscordantMatePairAlignments=76;LeftRepeat=L1ME1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67968762 (chr4:18688563-18694663);Frequency=0.71
chr4	CG	SV	18688557	18689007	76	+	.	ID=3100;Type=deletion;Left=chr4:18688557-18689007;Right=chr4:18694657-18695076
chr4	CG	SV	18694657	18695076	76	+	.	ID=3100;Type=deletion;Left=chr4:18688557-18689007;Right=chr4:18694657-18695076
chr4	CG	SV	20770087	20776692	81	.	.	ID=3098;Type=deletion;Left=chr4:20770087-20770533+;Right=chr4:20776198-20776692+;Distance=6111;DiscordantMatePairAlignments=81;LeftRepeat=L1M4:LINE:L1;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Tandem A;LeftGenes=NM_001035003;NM_001035004;NM_147182;NM_147183;RightGenes=NM_001035003;NM_001035004;NM_147182;NM_147183;XRef=rs71805859 (chr4:20770100-20776211);Frequency=0.88
chr4	CG	SV	20770087	20770533	81	+	.	ID=3098;Type=deletion;Left=chr4:20770087-20770533;Right=chr4:20776198-20776692
chr4	CG	SV	20776198	20776692	81	+	.	ID=3098;Type=deletion;Left=chr4:20770087-20770533;Right=chr4:20776198-20776692
chr4	CG	SV	20978188	20986301	129	.	.	ID=3097;Type=deletion;Left=chr4:20978188-20978725+;Right=chr4:20986005-20986301+;Distance=7817;DiscordantMatePairAlignments=129;LeftRepeat=;RightRepeat=;LeftGenes=NM_001035003;NM_001035004;NM_147182;RightGenes=NM_001035003;NM_001035004;NM_147182;XRef=rs72317980 (chr4:20978188-20986001);Frequency=0.00
chr4	CG	SV	20978188	20978725	129	+	.	ID=3097;Type=deletion;Left=chr4:20978188-20978725;Right=chr4:20986005-20986301
chr4	CG	SV	20986005	20986301	129	+	.	ID=3097;Type=deletion;Left=chr4:20978188-20978725;Right=chr4:20986005-20986301
chr4	CG	SV	21066543	21067912	103	.	.	ID=3096;Type=deletion;Left=chr4:21066543-21067004+;Right=chr4:21067485-21067912+;Distance=942;DiscordantMatePairAlignments=103;LeftRepeat=(TA)n:Simple_repeat:Simple_repeat;Tandem AT;RightRepeat=;LeftGenes=NM_001035003;NM_001035004;NM_147182;RightGenes=NM_001035003;NM_001035004;NM_147182;XRef=rs72184434 (chr4:21066543-21067485);Frequency=0.06
chr4	CG	SV	21066543	21067004	103	+	.	ID=3096;Type=deletion;Left=chr4:21066543-21067004;Right=chr4:21067485-21067912
chr4	CG	SV	21067485	21067912	103	+	.	ID=3096;Type=deletion;Left=chr4:21066543-21067004;Right=chr4:21067485-21067912
chr4	CG	SV	25119187	25120079	47	.	.	ID=1120;Type=tandem-duplication;Left=chr4:25119187-25119572-;Right=chr4:25119670-25120079-;Distance=507;DiscordantMatePairAlignments=47;LeftRepeat=Charlie5:DNA:MER1_type;RightRepeat=Charlie5:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	25119187	25119572	47	-	.	ID=1120;Type=tandem-duplication;Left=chr4:25119187-25119572;Right=chr4:25119670-25120079
chr4	CG	SV	25119670	25120079	47	-	.	ID=1120;Type=tandem-duplication;Left=chr4:25119187-25119572;Right=chr4:25119670-25120079
chr4	CG	SV	31714506	31718506	15	.	.	ID=1119;Type=tandem-duplication;Left=chr4:31714506-31714939-;Right=chr4:31718405-31718506-;Distance=3567;DiscordantMatePairAlignments=15;LeftRepeat=L1PA16:LINE:L1;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr4	CG	SV	31714506	31714939	15	-	.	ID=1119;Type=tandem-duplication;Left=chr4:31714506-31714939;Right=chr4:31718405-31718506
chr4	CG	SV	31718405	31718506	15	-	.	ID=1119;Type=tandem-duplication;Left=chr4:31714506-31714939;Right=chr4:31718405-31718506
chr4	CG	SV	33054618	33063213	27	.	.	ID=3085;Type=deletion;Left=chr4:33054618-33054999+;Right=chr4:33062866-33063213+;Distance=8248;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=L1MA9:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	33054618	33054999	27	+	.	ID=3085;Type=deletion;Left=chr4:33054618-33054999;Right=chr4:33062866-33063213
chr4	CG	SV	33062866	33063213	27	+	.	ID=3085;Type=deletion;Left=chr4:33054618-33054999;Right=chr4:33062866-33063213
chr4	CG	SV	33523565	33525175	71	.	.	ID=3083;Type=deletion;Left=chr4:33523565-33523853+;Right=chr4:33524623-33525175+;Distance=1058;DiscordantMatePairAlignments=71;LeftRepeat=MER11C:LTR:ERVK;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66649474 (chr4:33523565-33524622);Frequency=1.00
chr4	CG	SV	33523565	33523853	71	+	.	ID=3083;Type=deletion;Left=chr4:33523565-33523853;Right=chr4:33524623-33525175
chr4	CG	SV	33524623	33525175	71	+	.	ID=3083;Type=deletion;Left=chr4:33523565-33523853;Right=chr4:33524623-33525175
chr4	CG	SV	34916650	34921309	23	.	.	ID=3082;Type=deletion;Left=chr4:34916650-34916943+;Right=chr4:34920831-34921309+;Distance=4181;DiscordantMatePairAlignments=23;LeftRepeat=L2:LINE:L2;RightRepeat=THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr4	CG	SV	34916650	34916943	23	+	.	ID=3082;Type=deletion;Left=chr4:34916650-34916943;Right=chr4:34920831-34921309
chr4	CG	SV	34920831	34921309	23	+	.	ID=3082;Type=deletion;Left=chr4:34916650-34916943;Right=chr4:34920831-34921309
chr4	CG	SV	36348236	36350686	171	.	.	ID=3080;Type=deletion;Left=chr4:36348236-36348867+;Right=chr4:36350251-36350686+;Distance=2015;DiscordantMatePairAlignments=171;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	36348236	36348867	171	+	.	ID=3080;Type=deletion;Left=chr4:36348236-36348867;Right=chr4:36350251-36350686
chr4	CG	SV	36350251	36350686	171	+	.	ID=3080;Type=deletion;Left=chr4:36348236-36348867;Right=chr4:36350251-36350686
chr4	CG	SV	39701447	39702958	19	.	.	ID=3079;Type=deletion;Left=chr4:39701447-39702061+;Right=chr4:39702813-39702958+;Distance=1366;DiscordantMatePairAlignments=19;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=AluSq:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs67318308 (chr4:39701310-39702676);Frequency=0.94
chr4	CG	SV	39701447	39702061	19	+	.	ID=3079;Type=deletion;Left=chr4:39701447-39702061;Right=chr4:39702813-39702958
chr4	CG	SV	39702813	39702958	19	+	.	ID=3079;Type=deletion;Left=chr4:39701447-39702061;Right=chr4:39702813-39702958
chr4	CG	SV	39911421	39913454	55	.	.	ID=4018;Type=complex;Left=chr4:39911421-39911812+;Right=chr4:39913021-39913454-;Distance=2033;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=AluSq:SINE:Alu;LeftGenes=NM_004310;RightGenes=NM_004310;XRef=;Frequency=0.06
chr4	CG	SV	39911421	39911812	55	+	.	ID=4018;Type=complex;Left=chr4:39911421-39911812;Right=chr4:39913021-39913454
chr4	CG	SV	39913021	39913454	55	+	.	ID=4018;Type=complex;Left=chr4:39911421-39911812;Right=chr4:39913021-39913454
chr4	CG	SV	39911135	39913827	16	.	.	ID=450;Type=complex;Left=chr4:39911135-39911421-;Right=chr4:39913449-39913827+;Distance=2028;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=AluSq:SINE:Alu;LeftGenes=NM_004310;RightGenes=NM_004310;XRef=;Frequency=0.06
chr4	CG	SV	39911135	39911421	16	-	.	ID=450;Type=complex;Left=chr4:39911135-39911421;Right=chr4:39913449-39913827
chr4	CG	SV	39913449	39913827	16	-	.	ID=450;Type=complex;Left=chr4:39911135-39911421;Right=chr4:39913449-39913827
chr4	CG	SV	42457435	42464681	15	.	.	ID=3077;Type=deletion;Left=chr4:42457435-42457651+;Right=chr4:42464300-42464681+;Distance=6865;DiscordantMatePairAlignments=15;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1PB1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr4	CG	SV	42457435	42457651	15	+	.	ID=3077;Type=deletion;Left=chr4:42457435-42457651;Right=chr4:42464300-42464681
chr4	CG	SV	42464300	42464681	15	+	.	ID=3077;Type=deletion;Left=chr4:42457435-42457651;Right=chr4:42464300-42464681
chr4	CG	SV	43626253	43627165	15	.	.	ID=3076;Type=deletion;Left=chr4:43626253-43626671+;Right=chr4:43626594-43627165+;Distance=341;DiscordantMatePairAlignments=15;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs6148417 (chr4:43626253-43626594);Frequency=1.00
chr4	CG	SV	43626253	43626671	15	+	.	ID=3076;Type=deletion;Left=chr4:43626253-43626671;Right=chr4:43626594-43627165
chr4	CG	SV	43626594	43627165	15	+	.	ID=3076;Type=deletion;Left=chr4:43626253-43626671;Right=chr4:43626594-43627165
chr4	CG	SV	44202036	44203001	15	.	.	ID=3075;Type=deletion;Left=chr4:44202036-44202469+;Right=chr4:44202490-44203001+;Distance=454;DiscordantMatePairAlignments=15;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66878865 (chr4:44202032-44202486);Frequency=1.00
chr4	CG	SV	44202036	44202469	15	+	.	ID=3075;Type=deletion;Left=chr4:44202036-44202469;Right=chr4:44202490-44203001
chr4	CG	SV	44202490	44203001	15	+	.	ID=3075;Type=deletion;Left=chr4:44202036-44202469;Right=chr4:44202490-44203001
chr4	CG	SV	46491763	46494302	70	.	.	ID=3073;Type=deletion;Left=chr4:46491763-46492160+;Right=chr4:46493901-46494302+;Distance=2138;DiscordantMatePairAlignments=70;LeftRepeat=ERVL-B1:LTR:ERVL;RightRepeat=ERVL-B4:LTR:ERVL;LeftGenes=NM_130902;RightGenes=NM_130902;XRef=;Frequency=0.24
chr4	CG	SV	46491763	46492160	70	+	.	ID=3073;Type=deletion;Left=chr4:46491763-46492160;Right=chr4:46493901-46494302
chr4	CG	SV	46493901	46494302	70	+	.	ID=3073;Type=deletion;Left=chr4:46491763-46492160;Right=chr4:46493901-46494302
chr4	CG	SV	57234907	57239885	33	.	.	ID=3071;Type=deletion;Left=chr4:57234907-57235454+;Right=chr4:57239513-57239885+;Distance=4606;DiscordantMatePairAlignments=33;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001145460;NM_032495;NM_139212;RightGenes=NM_001145460;NM_032495;NM_139212;XRef=rs71853258 (chr4:57234772-57239513);Frequency=0.00
chr4	CG	SV	57234907	57235454	33	+	.	ID=3071;Type=deletion;Left=chr4:57234907-57235454;Right=chr4:57239513-57239885
chr4	CG	SV	57239513	57239885	33	+	.	ID=3071;Type=deletion;Left=chr4:57234907-57235454;Right=chr4:57239513-57239885
chr4	CG	SV	57782107	57782914	17	.	.	ID=3070;Type=deletion;Left=chr4:57782107-57782650+;Right=chr4:57782505-57782914+;Distance=398;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10525076 (chr4:57782093-57782491);Frequency=1.00
chr4	CG	SV	57782107	57782650	17	+	.	ID=3070;Type=deletion;Left=chr4:57782107-57782650;Right=chr4:57782505-57782914
chr4	CG	SV	57782505	57782914	17	+	.	ID=3070;Type=deletion;Left=chr4:57782107-57782650;Right=chr4:57782505-57782914
chr4	CG	SV	57842787	57843628	11	.	.	ID=3069;Type=deletion;Left=chr4:57842787-57843145+;Right=chr4:57843113-57843628+;Distance=326;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71180070 (chr4:57842787-57843113);Frequency=0.82
chr4	CG	SV	57842787	57843145	11	+	.	ID=3069;Type=deletion;Left=chr4:57842787-57843145;Right=chr4:57843113-57843628
chr4	CG	SV	57843113	57843628	11	+	.	ID=3069;Type=deletion;Left=chr4:57842787-57843145;Right=chr4:57843113-57843628
chr4	CG	SV	58582033	58583502	136	.	.	ID=3068;Type=deletion;Left=chr4:58582033-58582431+;Right=chr4:58583091-58583502+;Distance=1058;DiscordantMatePairAlignments=136;LeftRepeat=L1HS:LINE:L1;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Tandem A;Tandem AAAAC;LeftGenes=;RightGenes=;XRef=rs72145941 (chr4:58582045-58583091);Frequency=0.53
chr4	CG	SV	58582033	58582431	136	+	.	ID=3068;Type=deletion;Left=chr4:58582033-58582431;Right=chr4:58583091-58583502
chr4	CG	SV	58583091	58583502	136	+	.	ID=3068;Type=deletion;Left=chr4:58582033-58582431;Right=chr4:58583091-58583502
chr4	CG	SV	59627160	59633704	78	.	.	ID=3067;Type=deletion;Left=chr4:59627160-59627727+;Right=chr4:59633202-59633704+;Distance=6042;DiscordantMatePairAlignments=78;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72460317 (chr4:59627160-59633202);Frequency=0.94
chr4	CG	SV	59627160	59627727	78	+	.	ID=3067;Type=deletion;Left=chr4:59627160-59627727;Right=chr4:59633202-59633704
chr4	CG	SV	59633202	59633704	78	+	.	ID=3067;Type=deletion;Left=chr4:59627160-59627727;Right=chr4:59633202-59633704
chr4	CG	SV	61966724	61968203	45	.	.	ID=3063;Type=deletion;Left=chr4:61966724-61967085+;Right=chr4:61967873-61968203+;Distance=1149;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=MER6A:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	61966724	61967085	45	+	.	ID=3063;Type=deletion;Left=chr4:61966724-61967085;Right=chr4:61967873-61968203
chr4	CG	SV	61967873	61968203	45	+	.	ID=3063;Type=deletion;Left=chr4:61966724-61967085;Right=chr4:61967873-61968203
chr4	CG	SV	64466193	64467512	28	.	.	ID=3061;Type=deletion;Left=chr4:64466193-64466552+;Right=chr4:64467163-64467512+;Distance=970;DiscordantMatePairAlignments=28;LeftRepeat=L1MA3:LINE:L1;RightRepeat=L1MA3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71180075 (chr4:64466193-64467163);Frequency=1.00
chr4	CG	SV	64466193	64466552	28	+	.	ID=3061;Type=deletion;Left=chr4:64466193-64466552;Right=chr4:64467163-64467512
chr4	CG	SV	64467163	64467512	28	+	.	ID=3061;Type=deletion;Left=chr4:64466193-64466552;Right=chr4:64467163-64467512
chr4	CG	SV	64779694	64780960	126	.	.	ID=3060;Type=deletion;Left=chr4:64779694-64780291+;Right=chr4:64780428-64780960+;Distance=734;DiscordantMatePairAlignments=126;LeftRepeat=LTR77-int:LTR:ERV1;RightRepeat=LTR77-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr4	CG	SV	64779694	64780291	126	+	.	ID=3060;Type=deletion;Left=chr4:64779694-64780291;Right=chr4:64780428-64780960
chr4	CG	SV	64780428	64780960	126	+	.	ID=3060;Type=deletion;Left=chr4:64779694-64780291;Right=chr4:64780428-64780960
chr4	CG	SV	74050113	74050959	25	.	.	ID=3056;Type=deletion;Left=chr4:74050113-74050444+;Right=chr4:74050685-74050959+;Distance=572;DiscordantMatePairAlignments=25;LeftRepeat=L1P5:LINE:L1;Self chain;RightRepeat=L1PA17:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs72099749 (chr4:74050112-74050684);Frequency=0.82
chr4	CG	SV	74050113	74050444	25	+	.	ID=3056;Type=deletion;Left=chr4:74050113-74050444;Right=chr4:74050685-74050959
chr4	CG	SV	74050685	74050959	25	+	.	ID=3056;Type=deletion;Left=chr4:74050113-74050444;Right=chr4:74050685-74050959
chr4	CG	SV	75422056	75422938	20	.	.	ID=3055;Type=deletion;Left=chr4:75422056-75422561+;Right=chr4:75422473-75422938+;Distance=417;DiscordantMatePairAlignments=20;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=MLT1B:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=rs71909896 (chr4:75422052-75422469);Frequency=0.24
chr4	CG	SV	75422056	75422561	20	+	.	ID=3055;Type=deletion;Left=chr4:75422056-75422561;Right=chr4:75422473-75422938
chr4	CG	SV	75422473	75422938	20	+	.	ID=3055;Type=deletion;Left=chr4:75422056-75422561;Right=chr4:75422473-75422938
chr4	CG	SV	79488152	79494814	177	.	.	ID=3054;Type=deletion;Left=chr4:79488152-79488682+;Right=chr4:79494227-79494814+;Distance=6075;DiscordantMatePairAlignments=177;LeftRepeat=;RightRepeat=;LeftGenes=NM_001166133;NM_025074;RightGenes=NM_001166133;NM_025074;XRef=;Frequency=1.00
chr4	CG	SV	79488152	79488682	177	+	.	ID=3054;Type=deletion;Left=chr4:79488152-79488682;Right=chr4:79494227-79494814
chr4	CG	SV	79494227	79494814	177	+	.	ID=3054;Type=deletion;Left=chr4:79488152-79488682;Right=chr4:79494227-79494814
chr4	CG	SV	84042953	84044277	12	.	.	ID=1109;Type=tandem-duplication;Left=chr4:84042953-84043437-;Right=chr4:84043996-84044277-;Distance=840;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=NM_024672;RightGenes=NM_024672;XRef=;Frequency=0.06
chr4	CG	SV	84042953	84043437	12	-	.	ID=1109;Type=tandem-duplication;Left=chr4:84042953-84043437;Right=chr4:84043996-84044277
chr4	CG	SV	84043996	84044277	12	-	.	ID=1109;Type=tandem-duplication;Left=chr4:84042953-84043437;Right=chr4:84043996-84044277
chr4	CG	SV	88487284	88493791	34	.	.	ID=3049;Type=deletion;Left=chr4:88487284-88487690+;Right=chr4:88493339-88493791+;Distance=6055;DiscordantMatePairAlignments=34;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_016245;RightGenes=NM_016245;XRef=rs71813175 (chr4:88487284-88493339);Frequency=0.47
chr4	CG	SV	88487284	88487690	34	+	.	ID=3049;Type=deletion;Left=chr4:88487284-88487690;Right=chr4:88493339-88493791
chr4	CG	SV	88493339	88493791	34	+	.	ID=3049;Type=deletion;Left=chr4:88487284-88487690;Right=chr4:88493339-88493791
chr4	CG	SV	88702912	88705894	82	.	.	ID=3048;Type=deletion;Left=chr4:88702912-88703427+;Right=chr4:88705341-88705894+;Distance=2429;DiscordantMatePairAlignments=82;LeftRepeat=;RightRepeat=L1ME3B:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66992231 (chr4:88702907-88705336);Frequency=0.65
chr4	CG	SV	88702912	88703427	82	+	.	ID=3048;Type=deletion;Left=chr4:88702912-88703427;Right=chr4:88705341-88705894
chr4	CG	SV	88705341	88705894	82	+	.	ID=3048;Type=deletion;Left=chr4:88702912-88703427;Right=chr4:88705341-88705894
chr4	CG	SV	89065731	89078254	184	.	.	ID=449;Type=probable-inversion;Left=chr4:89065731-89066187-;Right=chr4:89077723-89078254+;Distance=11536;DiscordantMatePairAlignments=184;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr4	CG	SV	89065731	89066187	184	-	.	ID=449;Type=probable-inversion;Left=chr4:89065731-89066187;Right=chr4:89077723-89078254
chr4	CG	SV	89077723	89078254	184	-	.	ID=449;Type=probable-inversion;Left=chr4:89065731-89066187;Right=chr4:89077723-89078254
chr4	CG	SV	91815815	91822354	31	.	.	ID=3042;Type=deletion;Left=chr4:91815815-91816305+;Right=chr4:91821940-91822354+;Distance=6125;DiscordantMatePairAlignments=31;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001145065;NM_207491;RightGenes=NM_001145065;NM_207491;XRef=rs68154073 (chr4:91815806-91821931);Frequency=1.00
chr4	CG	SV	91815815	91816305	31	+	.	ID=3042;Type=deletion;Left=chr4:91815815-91816305;Right=chr4:91821940-91822354
chr4	CG	SV	91821940	91822354	31	+	.	ID=3042;Type=deletion;Left=chr4:91815815-91816305;Right=chr4:91821940-91822354
chr4	CG	SV	94778477	94784981	111	.	.	ID=3041;Type=deletion;Left=chr4:94778477-94778953+;Right=chr4:94784528-94784981+;Distance=6051;DiscordantMatePairAlignments=111;LeftRepeat=;RightRepeat=;LeftGenes=NM_001510;RightGenes=NM_001510;XRef=rs67415856 (chr4:94778477-94784528);Frequency=0.41
chr4	CG	SV	94778477	94778953	111	+	.	ID=3041;Type=deletion;Left=chr4:94778477-94778953;Right=chr4:94784528-94784981
chr4	CG	SV	94784528	94784981	111	+	.	ID=3041;Type=deletion;Left=chr4:94778477-94778953;Right=chr4:94784528-94784981
chr4	CG	SV	100242011	100242914	13	.	.	ID=3038;Type=deletion;Left=chr4:100242011-100242386+;Right=chr4:100242393-100242914+;Distance=382;DiscordantMatePairAlignments=13;LeftRepeat=Tandem period 19;RightRepeat=Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	100242011	100242386	13	+	.	ID=3038;Type=deletion;Left=chr4:100242011-100242386;Right=chr4:100242393-100242914
chr4	CG	SV	100242393	100242914	13	+	.	ID=3038;Type=deletion;Left=chr4:100242011-100242386;Right=chr4:100242393-100242914
chr4	CG	SV	102179179	102180608	72	.	.	ID=3036;Type=deletion;Left=chr4:102179179-102179528+;Right=chr4:102180213-102180608+;Distance=1034;DiscordantMatePairAlignments=72;LeftRepeat=;RightRepeat=;LeftGenes=NM_000944;NM_001130691;NM_001130692;RightGenes=NM_000944;NM_001130691;NM_001130692;XRef=;Frequency=0.41
chr4	CG	SV	102179179	102179528	72	+	.	ID=3036;Type=deletion;Left=chr4:102179179-102179528;Right=chr4:102180213-102180608
chr4	CG	SV	102180213	102180608	72	+	.	ID=3036;Type=deletion;Left=chr4:102179179-102179528;Right=chr4:102180213-102180608
chr4	CG	SV	103006810	103007782	59	.	.	ID=3035;Type=deletion;Left=chr4:103006810-103007219+;Right=chr4:103007375-103007782+;Distance=565;DiscordantMatePairAlignments=59;LeftRepeat=L1HS:LINE:L1;RightRepeat=L1MCc:LINE:L1;LeftGenes=NM_001083907;NM_001127507;NM_017935;RightGenes=NM_001083907;NM_001127507;NM_017935;XRef=;Frequency=0.53
chr4	CG	SV	103006810	103007219	59	+	.	ID=3035;Type=deletion;Left=chr4:103006810-103007219;Right=chr4:103007375-103007782
chr4	CG	SV	103007375	103007782	59	+	.	ID=3035;Type=deletion;Left=chr4:103006810-103007219;Right=chr4:103007375-103007782
chr4	CG	SV	105113495	105114676	24	.	.	ID=3034;Type=deletion;Left=chr4:105113495-105113944+;Right=chr4:105114129-105114676+;Distance=634;DiscordantMatePairAlignments=24;LeftRepeat=HERV4_I:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71662133 (chr4:105113495-105114126);Frequency=0.94
chr4	CG	SV	105113495	105113944	24	+	.	ID=3034;Type=deletion;Left=chr4:105113495-105113944;Right=chr4:105114129-105114676
chr4	CG	SV	105114129	105114676	24	+	.	ID=3034;Type=deletion;Left=chr4:105113495-105113944;Right=chr4:105114129-105114676
chr4	CG	SV	107159919	107163192	57	.	.	ID=3033;Type=deletion;Left=chr4:107159919-107160561+;Right=chr4:107162717-107163192+;Distance=2798;DiscordantMatePairAlignments=57;LeftRepeat=;RightRepeat=MER72:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs72358510 (chr4:107159919-107162717);Frequency=0.06
chr4	CG	SV	107159919	107160561	57	+	.	ID=3033;Type=deletion;Left=chr4:107159919-107160561;Right=chr4:107162717-107163192
chr4	CG	SV	107162717	107163192	57	+	.	ID=3033;Type=deletion;Left=chr4:107159919-107160561;Right=chr4:107162717-107163192
chr4	CG	SV	107536458	107540110	10	.	.	ID=448;Type=probable-inversion;Left=chr4:107536458-107536715-;Right=chr4:107539869-107540110+;Distance=3154;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr4	CG	SV	107536458	107536715	10	-	.	ID=448;Type=probable-inversion;Left=chr4:107536458-107536715;Right=chr4:107539869-107540110
chr4	CG	SV	107539869	107540110	10	-	.	ID=448;Type=probable-inversion;Left=chr4:107536458-107536715;Right=chr4:107539869-107540110
chr4	CG	SV	108347276	108351679	37	.	.	ID=3030;Type=deletion;Left=chr4:108347276-108347725+;Right=chr4:108351182-108351679+;Distance=3906;DiscordantMatePairAlignments=37;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66829191 (chr4:108347277-108351183);Frequency=1.00
chr4	CG	SV	108347276	108347725	37	+	.	ID=3030;Type=deletion;Left=chr4:108347276-108347725;Right=chr4:108351182-108351679
chr4	CG	SV	108351182	108351679	37	+	.	ID=3030;Type=deletion;Left=chr4:108347276-108347725;Right=chr4:108351182-108351679
chr4	CG	SV	108496150	108499384	40	.	.	ID=3029;Type=deletion;Left=chr4:108496150-108496491+;Right=chr4:108498958-108499384+;Distance=2808;DiscordantMatePairAlignments=40;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71162458 (chr4:108496150-108498958);Frequency=0.94
chr4	CG	SV	108496150	108496491	40	+	.	ID=3029;Type=deletion;Left=chr4:108496150-108496491;Right=chr4:108498958-108499384
chr4	CG	SV	108498958	108499384	40	+	.	ID=3029;Type=deletion;Left=chr4:108496150-108496491;Right=chr4:108498958-108499384
chr4	CG	SV	110513684	110514055	11	-	.	ID=414;Type=interchromosomal;Left=chr4:110513684-110514055-;Right=chr9:127719046-127719125+;Distance=;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=MADE2:DNA:Mariner;LeftGenes=;RightGenes=NM_001134778;NM_006195;NR_024122;NR_024123;XRef=;Frequency=0.00
chr9	CG	SV	127719046	127719125	11	-	.	ID=414;Type=interchromosomal;Left=chr4:110513684-110514055-;Right=chr9:127719046-127719125+;Distance=;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=MADE2:DNA:Mariner;LeftGenes=;RightGenes=NM_001134778;NM_006195;NR_024122;NR_024123;XRef=;Frequency=0.00
chr4	CG	SV	112208795	112209181	14	-	.	ID=1104;Type=interchromosomal;Left=chr4:112208795-112209181-;Right=chr6:8643055-8643214-;Distance=;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=L1MB1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	8643055	8643214	14	-	.	ID=1104;Type=interchromosomal;Left=chr4:112208795-112209181-;Right=chr6:8643055-8643214-;Distance=;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=L1MB1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	112516772	112529621	80	.	.	ID=3027;Type=deletion;Left=chr4:112516772-112517191+;Right=chr4:112529067-112529621+;Distance=12295;DiscordantMatePairAlignments=80;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	112516772	112517191	80	+	.	ID=3027;Type=deletion;Left=chr4:112516772-112517191;Right=chr4:112529067-112529621
chr4	CG	SV	112529067	112529621	80	+	.	ID=3027;Type=deletion;Left=chr4:112516772-112517191;Right=chr4:112529067-112529621
chr4	CG	SV	114348639	114351015	49	.	.	ID=3026;Type=deletion;Left=chr4:114348639-114349040+;Right=chr4:114350525-114351015+;Distance=1886;DiscordantMatePairAlignments=49;LeftRepeat=L2:LINE:L2;RightRepeat=LTR39:LTR:ERV1;LeftGenes=NM_001127493;NM_001148;NM_020977;RightGenes=NM_001127493;NM_001148;NM_020977;XRef=;Frequency=0.00
chr4	CG	SV	114348639	114349040	49	+	.	ID=3026;Type=deletion;Left=chr4:114348639-114349040;Right=chr4:114350525-114351015
chr4	CG	SV	114350525	114351015	49	+	.	ID=3026;Type=deletion;Left=chr4:114348639-114349040;Right=chr4:114350525-114351015
chr4	CG	SV	115394577	115403779	25	.	.	ID=3025;Type=deletion;Left=chr4:115394577-115395070+;Right=chr4:115403287-115403779+;Distance=8710;DiscordantMatePairAlignments=25;LeftRepeat=L1PA17:LINE:L1;RightRepeat=L1PA6:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr4	CG	SV	115394577	115395070	25	+	.	ID=3025;Type=deletion;Left=chr4:115394577-115395070;Right=chr4:115403287-115403779
chr4	CG	SV	115403287	115403779	25	+	.	ID=3025;Type=deletion;Left=chr4:115394577-115395070;Right=chr4:115403287-115403779
chr4	CG	SV	116148172	116151871	64	.	.	ID=3024;Type=deletion;Left=chr4:116148172-116148598+;Right=chr4:116151326-116151871+;Distance=3154;DiscordantMatePairAlignments=64;LeftRepeat=;RightRepeat=;LeftGenes=NM_022569;RightGenes=NM_022569;XRef=;Frequency=0.71
chr4	CG	SV	116148172	116148598	64	+	.	ID=3024;Type=deletion;Left=chr4:116148172-116148598;Right=chr4:116151326-116151871
chr4	CG	SV	116151326	116151871	64	+	.	ID=3024;Type=deletion;Left=chr4:116148172-116148598;Right=chr4:116151326-116151871
chr4	CG	SV	119344862	119350234	84	.	.	ID=3023;Type=deletion;Left=chr4:119344862-119345434+;Right=chr4:119349650-119350234+;Distance=4788;DiscordantMatePairAlignments=84;LeftRepeat=MER57A-int:LTR:ERV1;RightRepeat=;LeftGenes=NM_004784;RightGenes=NM_004784;XRef=rs66977922 (chr4:119344859-119349647);Frequency=0.18
chr4	CG	SV	119344862	119345434	84	+	.	ID=3023;Type=deletion;Left=chr4:119344862-119345434;Right=chr4:119349650-119350234
chr4	CG	SV	119349650	119350234	84	+	.	ID=3023;Type=deletion;Left=chr4:119344862-119345434;Right=chr4:119349650-119350234
chr4	CG	SV	125049190	125049708	14	.	.	ID=1108;Type=tandem-duplication;Left=chr4:125049190-125049454-;Right=chr4:125049510-125049708-;Distance=254;DiscordantMatePairAlignments=14;LeftRepeat=L1MB4:LINE:L1;RightRepeat=;LeftGenes=NR_027105;RightGenes=NR_027105;XRef=;Frequency=0.35
chr4	CG	SV	125049190	125049454	14	-	.	ID=1108;Type=tandem-duplication;Left=chr4:125049190-125049454;Right=chr4:125049510-125049708
chr4	CG	SV	125049510	125049708	14	-	.	ID=1108;Type=tandem-duplication;Left=chr4:125049190-125049454;Right=chr4:125049510-125049708
chr4	CG	SV	129184015	129184435	24	-	.	ID=984;Type=interchromosomal;Left=chr4:129184015-129184435-;Right=chr17:47331750-47332258-;Distance=;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;RightRepeat=L1PA15:LINE:L1;LeftGenes=;RightGenes=NM_001082533;NM_001082534;NM_020178;XRef=;Frequency=0.00
chr17	CG	SV	47331750	47332258	24	-	.	ID=984;Type=interchromosomal;Left=chr4:129184015-129184435-;Right=chr17:47331750-47332258-;Distance=;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;RightRepeat=L1PA15:LINE:L1;LeftGenes=;RightGenes=NM_001082533;NM_001082534;NM_020178;XRef=;Frequency=0.00
chr4	CG	SV	134351847	134352868	22	.	.	ID=3016;Type=deletion;Left=chr4:134351847-134352133+;Right=chr4:134352475-134352868+;Distance=628;DiscordantMatePairAlignments=22;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Tandem TG;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72041961 (chr4:134351863-134352475);Frequency=1.00
chr4	CG	SV	134351847	134352133	22	+	.	ID=3016;Type=deletion;Left=chr4:134351847-134352133;Right=chr4:134352475-134352868
chr4	CG	SV	134352475	134352868	22	+	.	ID=3016;Type=deletion;Left=chr4:134351847-134352133;Right=chr4:134352475-134352868
chr4	CG	SV	135652480	135655527	41	.	.	ID=3015;Type=deletion;Left=chr4:135652480-135652735+;Right=chr4:135655151-135655527+;Distance=2671;DiscordantMatePairAlignments=41;LeftRepeat=Arthur1:DNA:Tip100;RightRepeat=L1MA9:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72144499 (chr4:135652457-135655151);Frequency=0.71
chr4	CG	SV	135652480	135652735	41	+	.	ID=3015;Type=deletion;Left=chr4:135652480-135652735;Right=chr4:135655151-135655527
chr4	CG	SV	135655151	135655527	41	+	.	ID=3015;Type=deletion;Left=chr4:135652480-135652735;Right=chr4:135655151-135655527
chr4	CG	SV	139185661	139187047	63	.	.	ID=3014;Type=deletion;Left=chr4:139185661-139186060+;Right=chr4:139186668-139187047+;Distance=1007;DiscordantMatePairAlignments=63;LeftRepeat=MER61D:LTR:ERV1;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66727003 (chr4:139185661-139186667);Frequency=0.59
chr4	CG	SV	139185661	139186060	63	+	.	ID=3014;Type=deletion;Left=chr4:139185661-139186060;Right=chr4:139186668-139187047
chr4	CG	SV	139186668	139187047	63	+	.	ID=3014;Type=deletion;Left=chr4:139185661-139186060;Right=chr4:139186668-139187047
chr4	CG	SV	144077367	144078565	57	.	.	ID=3012;Type=deletion;Left=chr4:144077367-144077807+;Right=chr4:144078047-144078565+;Distance=680;DiscordantMatePairAlignments=57;LeftRepeat=;RightRepeat=MIR3:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	144077367	144077807	57	+	.	ID=3012;Type=deletion;Left=chr4:144077367-144077807;Right=chr4:144078047-144078565
chr4	CG	SV	144078047	144078565	57	+	.	ID=3012;Type=deletion;Left=chr4:144077367-144077807;Right=chr4:144078047-144078565
chr4	CG	SV	152471991	152474063	44	.	.	ID=3009;Type=deletion;Left=chr4:152471991-152472324+;Right=chr4:152473579-152474063+;Distance=1588;DiscordantMatePairAlignments=44;LeftRepeat=MLT1H:LTR:MaLR;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72451194 (chr4:152471993-152473579);Frequency=0.12
chr4	CG	SV	152471991	152472324	44	+	.	ID=3009;Type=deletion;Left=chr4:152471991-152472324;Right=chr4:152473579-152474063
chr4	CG	SV	152473579	152474063	44	+	.	ID=3009;Type=deletion;Left=chr4:152471991-152472324;Right=chr4:152473579-152474063
chr4	CG	SV	152560162	152561556	93	.	.	ID=3008;Type=deletion;Left=chr4:152560162-152560647+;Right=chr4:152561009-152561556+;Distance=847;DiscordantMatePairAlignments=93;LeftRepeat=;RightRepeat=;LeftGenes=NM_001109977;RightGenes=NM_001109977;XRef=rs72214776 (chr4:152560155-152561002);Frequency=0.94
chr4	CG	SV	152560162	152560647	93	+	.	ID=3008;Type=deletion;Left=chr4:152560162-152560647;Right=chr4:152561009-152561556
chr4	CG	SV	152561009	152561556	93	+	.	ID=3008;Type=deletion;Left=chr4:152560162-152560647;Right=chr4:152561009-152561556
chr4	CG	SV	154600186	154600730	13	.	.	ID=1106;Type=tandem-duplication;Left=chr4:154600186-154600474-;Right=chr4:154600574-154600730-;Distance=256;DiscordantMatePairAlignments=13;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	154600186	154600474	13	-	.	ID=1106;Type=tandem-duplication;Left=chr4:154600186-154600474;Right=chr4:154600574-154600730
chr4	CG	SV	154600574	154600730	13	-	.	ID=1106;Type=tandem-duplication;Left=chr4:154600186-154600474;Right=chr4:154600574-154600730
chr4	CG	SV	157776814	157777843	46	.	.	ID=3006;Type=deletion;Left=chr4:157776814-157777265+;Right=chr4:157777288-157777843+;Distance=474;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	157776814	157777265	46	+	.	ID=3006;Type=deletion;Left=chr4:157776814-157777265;Right=chr4:157777288-157777843
chr4	CG	SV	157777288	157777843	46	+	.	ID=3006;Type=deletion;Left=chr4:157776814-157777265;Right=chr4:157777288-157777843
chr4	CG	SV	164344472	164345301	18	.	.	ID=3003;Type=deletion;Left=chr4:164344472-164344986+;Right=chr4:164344900-164345301+;Distance=428;DiscordantMatePairAlignments=18;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr4	CG	SV	164344472	164344986	18	+	.	ID=3003;Type=deletion;Left=chr4:164344472-164344986;Right=chr4:164344900-164345301
chr4	CG	SV	164344900	164345301	18	+	.	ID=3003;Type=deletion;Left=chr4:164344472-164344986;Right=chr4:164344900-164345301
chr4	CG	SV	166222113	166224826	20	.	.	ID=3002;Type=deletion;Left=chr4:166222113-166222533+;Right=chr4:166224551-166224826+;Distance=2438;DiscordantMatePairAlignments=20;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_001100389;RightGenes=NM_001100389;XRef=rs71937308 (chr4:166222054-166224492);Frequency=1.00
chr4	CG	SV	166222113	166222533	20	+	.	ID=3002;Type=deletion;Left=chr4:166222113-166222533;Right=chr4:166224551-166224826
chr4	CG	SV	166224551	166224826	20	+	.	ID=3002;Type=deletion;Left=chr4:166222113-166222533;Right=chr4:166224551-166224826
chr4	CG	SV	167913620	167920230	95	.	.	ID=3000;Type=deletion;Left=chr4:167913620-167914094+;Right=chr4:167919655-167920230+;Distance=6035;DiscordantMatePairAlignments=95;LeftRepeat=;RightRepeat=;LeftGenes=NM_001040159;NM_016950;RightGenes=NM_001040159;NM_016950;XRef=rs71929678 (chr4:167913623-167919658);Frequency=0.88
chr4	CG	SV	167913620	167914094	95	+	.	ID=3000;Type=deletion;Left=chr4:167913620-167914094;Right=chr4:167919655-167920230
chr4	CG	SV	167919655	167920230	95	+	.	ID=3000;Type=deletion;Left=chr4:167913620-167914094;Right=chr4:167919655-167920230
chr4	CG	SV	169353391	169355272	34	.	.	ID=2999;Type=deletion;Left=chr4:169353391-169353917+;Right=chr4:169354995-169355272+;Distance=1604;DiscordantMatePairAlignments=34;LeftRepeat=L1PA15-16:LINE:L1;RightRepeat=L1PA15-16:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	169353391	169353917	34	+	.	ID=2999;Type=deletion;Left=chr4:169353391-169353917;Right=chr4:169354995-169355272
chr4	CG	SV	169354995	169355272	34	+	.	ID=2999;Type=deletion;Left=chr4:169353391-169353917;Right=chr4:169354995-169355272
chr4	CG	SV	171307381	171310305	18	.	.	ID=2998;Type=deletion;Left=chr4:171307381-171307694+;Right=chr4:171309827-171310305+;Distance=2446;DiscordantMatePairAlignments=18;LeftRepeat=L1MA9:LINE:L1;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72491426 (chr4:171307381-171309827);Frequency=0.15
chr4	CG	SV	171307381	171307694	18	+	.	ID=2998;Type=deletion;Left=chr4:171307381-171307694;Right=chr4:171309827-171310305
chr4	CG	SV	171309827	171310305	18	+	.	ID=2998;Type=deletion;Left=chr4:171307381-171307694;Right=chr4:171309827-171310305
chr4	CG	SV	172610987	172616412	42	.	.	ID=2997;Type=deletion;Left=chr4:172610987-172611320+;Right=chr4:172616001-172616412+;Distance=5014;DiscordantMatePairAlignments=42;LeftRepeat=MIRb:SINE:MIR;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72281132 (chr4:172610986-172616000);Frequency=0.53
chr4	CG	SV	172610987	172611320	42	+	.	ID=2997;Type=deletion;Left=chr4:172610987-172611320;Right=chr4:172616001-172616412
chr4	CG	SV	172616001	172616412	42	+	.	ID=2997;Type=deletion;Left=chr4:172610987-172611320;Right=chr4:172616001-172616412
chr4	CG	SV	175861744	175864017	44	.	.	ID=2996;Type=deletion;Left=chr4:175861744-175862231+;Right=chr4:175863548-175864017+;Distance=1804;DiscordantMatePairAlignments=44;LeftRepeat=AluJb:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=NM_001042543;NM_006529;RightGenes=NM_001042543;NM_006529;XRef=rs72167810 (chr4:175861744-175863548);Frequency=0.35
chr4	CG	SV	175861744	175862231	44	+	.	ID=2996;Type=deletion;Left=chr4:175861744-175862231;Right=chr4:175863548-175864017
chr4	CG	SV	175863548	175864017	44	+	.	ID=2996;Type=deletion;Left=chr4:175861744-175862231;Right=chr4:175863548-175864017
chr4	CG	SV	178088099	178089772	32	.	.	ID=2995;Type=deletion;Left=chr4:178088099-178088487+;Right=chr4:178089245-178089772+;Distance=1146;DiscordantMatePairAlignments=32;LeftRepeat=L1M4:LINE:L1;RightRepeat=MLT2E:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr4	CG	SV	178088099	178088487	32	+	.	ID=2995;Type=deletion;Left=chr4:178088099-178088487;Right=chr4:178089245-178089772
chr4	CG	SV	178089245	178089772	32	+	.	ID=2995;Type=deletion;Left=chr4:178088099-178088487;Right=chr4:178089245-178089772
chr4	CG	SV	179477632	179483880	27	.	.	ID=2994;Type=deletion;Left=chr4:179477632-179478014+;Right=chr4:179483427-179483880+;Distance=5795;DiscordantMatePairAlignments=27;LeftRepeat=L1MB4:LINE:L1;RightRepeat=MLT1H1-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67627360 (chr4:179477632-179483425);Frequency=0.00
chr4	CG	SV	179477632	179478014	27	+	.	ID=2994;Type=deletion;Left=chr4:179477632-179478014;Right=chr4:179483427-179483880
chr4	CG	SV	179483427	179483880	27	+	.	ID=2994;Type=deletion;Left=chr4:179477632-179478014;Right=chr4:179483427-179483880
chr4	CG	SV	179769969	179772133	17	.	.	ID=2992;Type=deletion;Left=chr4:179769969-179770368+;Right=chr4:179771839-179772133+;Distance=1870;DiscordantMatePairAlignments=17;LeftRepeat=THE1C:LTR:MaLR;RightRepeat=LTR33:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	179769969	179770368	17	+	.	ID=2992;Type=deletion;Left=chr4:179769969-179770368;Right=chr4:179771839-179772133
chr4	CG	SV	179771839	179772133	17	+	.	ID=2992;Type=deletion;Left=chr4:179769969-179770368;Right=chr4:179771839-179772133
chr4	CG	SV	181372109	181376090	75	.	.	ID=2990;Type=deletion;Left=chr4:181372109-181372565+;Right=chr4:181375637-181376090+;Distance=3528;DiscordantMatePairAlignments=75;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72192020 (chr4:181372109-181375637);Frequency=0.00
chr4	CG	SV	181372109	181372565	75	+	.	ID=2990;Type=deletion;Left=chr4:181372109-181372565;Right=chr4:181375637-181376090
chr4	CG	SV	181375637	181376090	75	+	.	ID=2990;Type=deletion;Left=chr4:181372109-181372565;Right=chr4:181375637-181376090
chr4	CG	SV	182113791	182115764	162	.	.	ID=2989;Type=deletion;Left=chr4:182113791-182114285+;Right=chr4:182115293-182115764+;Distance=1502;DiscordantMatePairAlignments=162;LeftRepeat=L1HS:LINE:L1;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67900735 (chr4:182113796-182115298);Frequency=1.00
chr4	CG	SV	182113791	182114285	162	+	.	ID=2989;Type=deletion;Left=chr4:182113791-182114285;Right=chr4:182115293-182115764
chr4	CG	SV	182115293	182115764	162	+	.	ID=2989;Type=deletion;Left=chr4:182113791-182114285;Right=chr4:182115293-182115764
chr4	CG	SV	182293555	182294664	93	.	.	ID=2987;Type=deletion;Left=chr4:182293555-182294047+;Right=chr4:182294125-182294664+;Distance=570;DiscordantMatePairAlignments=93;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72511292 (chr4:182293553-182294123);Frequency=0.94
chr4	CG	SV	182293555	182294047	93	+	.	ID=2987;Type=deletion;Left=chr4:182293555-182294047;Right=chr4:182294125-182294664
chr4	CG	SV	182294125	182294664	93	+	.	ID=2987;Type=deletion;Left=chr4:182293555-182294047;Right=chr4:182294125-182294664
chr4	CG	SV	182932147	182933849	103	.	.	ID=2986;Type=deletion;Left=chr4:182932147-182932578+;Right=chr4:182933160-182933849+;Distance=1013;DiscordantMatePairAlignments=103;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr4	CG	SV	182932147	182932578	103	+	.	ID=2986;Type=deletion;Left=chr4:182932147-182932578;Right=chr4:182933160-182933849
chr4	CG	SV	182933160	182933849	103	+	.	ID=2986;Type=deletion;Left=chr4:182932147-182932578;Right=chr4:182933160-182933849
chr4	CG	SV	184911426	184913033	18	.	.	ID=2984;Type=deletion;Left=chr4:184911426-184912026+;Right=chr4:184912887-184913033+;Distance=1461;DiscordantMatePairAlignments=18;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr4	CG	SV	184911426	184912026	18	+	.	ID=2984;Type=deletion;Left=chr4:184911426-184912026;Right=chr4:184912887-184913033
chr4	CG	SV	184912887	184913033	18	+	.	ID=2984;Type=deletion;Left=chr4:184911426-184912026;Right=chr4:184912887-184913033
chr4	CG	SV	187450961	187452122	47	.	.	ID=2983;Type=deletion;Left=chr4:187450961-187451496+;Right=chr4:187451744-187452122+;Distance=783;DiscordantMatePairAlignments=47;LeftRepeat=AluSc:SINE:Alu;Tandem A;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71856018 (chr4:187450936-187451717);Frequency=0.59
chr4	CG	SV	187450961	187451496	47	+	.	ID=2983;Type=deletion;Left=chr4:187450961-187451496;Right=chr4:187451744-187452122
chr4	CG	SV	187451744	187452122	47	+	.	ID=2983;Type=deletion;Left=chr4:187450961-187451496;Right=chr4:187451744-187452122
chr4	CG	SV	190032436	190033261	10	.	.	ID=2979;Type=deletion;Left=chr4:190032436-190032708+;Right=chr4:190033123-190033261+;Distance=687;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 65;RightRepeat=Self chain;Tandem period 116;Tandem period 167;LeftGenes=;RightGenes=;XRef=rs72095731 (chr4:190032298-190032818);Frequency=0.71
chr4	CG	SV	190032436	190032708	10	+	.	ID=2979;Type=deletion;Left=chr4:190032436-190032708;Right=chr4:190033123-190033261
chr4	CG	SV	190033123	190033261	10	+	.	ID=2979;Type=deletion;Left=chr4:190032436-190032708;Right=chr4:190033123-190033261
chr4	CG	SV	190295008	190301764	43	.	.	ID=2977;Type=deletion;Left=chr4:190295008-190295524+;Right=chr4:190301282-190301764+;Distance=6274;DiscordantMatePairAlignments=43;LeftRepeat=L1P1:LINE:L1;RightRepeat=THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67851464 (chr4:190294992-190301266);Frequency=0.94
chr4	CG	SV	190295008	190295524	43	+	.	ID=2977;Type=deletion;Left=chr4:190295008-190295524;Right=chr4:190301282-190301764
chr4	CG	SV	190301282	190301764	43	+	.	ID=2977;Type=deletion;Left=chr4:190295008-190295524;Right=chr4:190301282-190301764
chr4	CG	SV	190342448	190343598	68	.	.	ID=2976;Type=deletion;Left=chr4:190342448-190342832+;Right=chr4:190343307-190343598+;Distance=859;DiscordantMatePairAlignments=68;LeftRepeat=Self chain;Tandem period 161;Tandem period 54;RightRepeat=Self chain;Tandem period 161;Tandem period 54;LeftGenes=;RightGenes=;XRef=rs66954860 (chr4:190342578-190343277);Frequency=1.00
chr4	CG	SV	190342448	190342832	68	+	.	ID=2976;Type=deletion;Left=chr4:190342448-190342832;Right=chr4:190343307-190343598
chr4	CG	SV	190343307	190343598	68	+	.	ID=2976;Type=deletion;Left=chr4:190342448-190342832;Right=chr4:190343307-190343598
chr4	CG	SV	190772206	190772490	36	.	.	ID=981;Type=complex;Left=chr4:190772206-190772354-;Right=chr4:190772401-190772490-;Distance=136;DiscordantMatePairAlignments=36;LeftRepeat=SegDup;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr4	CG	SV	190772206	190772354	36	-	.	ID=981;Type=complex;Left=chr4:190772206-190772354;Right=chr4:190772401-190772490
chr4	CG	SV	190772401	190772490	36	-	.	ID=981;Type=complex;Left=chr4:190772206-190772354;Right=chr4:190772401-190772490
chr4	CG	SV	190772499	190775606	22	.	.	ID=2973;Type=complex;Left=chr4:190772499-190772573+;Right=chr4:190775357-190775606+;Distance=2858;DiscordantMatePairAlignments=22;LeftRepeat=SegDup;Self chain;RightRepeat=LTR12C:LTR:ERV1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190772499	190772573	22	+	.	ID=2973;Type=complex;Left=chr4:190772499-190772573;Right=chr4:190775357-190775606
chr4	CG	SV	190775357	190775606	22	+	.	ID=2973;Type=complex;Left=chr4:190772499-190772573;Right=chr4:190775357-190775606
chr4	CG	SV	190822807	190850110	494	.	.	ID=3694;Type=probable-inversion;Left=chr4:190822807-190823318+;Right=chr4:190849552-190850110-;Distance=27303;DiscordantMatePairAlignments=494;LeftRepeat=Self chain;RightRepeat=LTR12C:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190822807	190823318	494	+	.	ID=3694;Type=probable-inversion;Left=chr4:190822807-190823318;Right=chr4:190849552-190850110
chr4	CG	SV	190849552	190850110	494	+	.	ID=3694;Type=probable-inversion;Left=chr4:190822807-190823318;Right=chr4:190849552-190850110
chr4	CG	SV	190844038	190847682	19	.	.	ID=2970;Type=deletion;Left=chr4:190844038-190844308+;Right=chr4:190847299-190847682+;Distance=3261;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;Tandem period 110;Tandem period 57;RightRepeat=MER2:DNA:MER2_type;Self chain;Tandem period 53;LeftGenes=;RightGenes=;XRef=rs71647284 (chr4:190843933-190847246);Frequency=1.00
chr4	CG	SV	190844038	190844308	19	+	.	ID=2970;Type=deletion;Left=chr4:190844038-190844308;Right=chr4:190847299-190847682
chr4	CG	SV	190847299	190847682	19	+	.	ID=2970;Type=deletion;Left=chr4:190844038-190844308;Right=chr4:190847299-190847682
chr4	CG	SV	190861634	190862434	14	.	.	ID=2969;Type=deletion;Left=chr4:190861634-190862190+;Right=chr4:190861981-190862434+;Distance=347;DiscordantMatePairAlignments=14;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6148861 (chr4:190861622-190861969);Frequency=1.00
chr4	CG	SV	190861634	190862190	14	+	.	ID=2969;Type=deletion;Left=chr4:190861634-190862190;Right=chr4:190861981-190862434
chr4	CG	SV	190861981	190862434	14	+	.	ID=2969;Type=deletion;Left=chr4:190861634-190862190;Right=chr4:190861981-190862434
chr4	CG	SV	190899926	190901202	98	.	.	ID=2967;Type=deletion;Left=chr4:190899926-190900345+;Right=chr4:190900721-190901202+;Distance=795;DiscordantMatePairAlignments=98;LeftRepeat=L1PBa:LINE:L1;Self chain;RightRepeat=L1PBa:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190899926	190900345	98	+	.	ID=2967;Type=deletion;Left=chr4:190899926-190900345;Right=chr4:190900721-190901202
chr4	CG	SV	190900721	190901202	98	+	.	ID=2967;Type=deletion;Left=chr4:190899926-190900345;Right=chr4:190900721-190901202
chr4	CG	SV	190978523	190979285	10	.	.	ID=2966;Type=deletion;Left=chr4:190978523-190979084+;Right=chr4:190978865-190979285+;Distance=342;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 57;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs34104814 (chr4:190978411-190978696);Frequency=0.88
chr4	CG	SV	190978523	190979084	10	+	.	ID=2966;Type=deletion;Left=chr4:190978523-190979084;Right=chr4:190978865-190979285
chr4	CG	SV	190978865	190979285	10	+	.	ID=2966;Type=deletion;Left=chr4:190978523-190979084;Right=chr4:190978865-190979285
chr4	CG	SV	191035650	191038075	31	.	.	ID=2965;Type=deletion;Left=chr4:191035650-191035913+;Right=chr4:191037595-191038075+;Distance=1945;DiscordantMatePairAlignments=31;LeftRepeat=L1PA4:LINE:L1;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	191035650	191035913	31	+	.	ID=2965;Type=deletion;Left=chr4:191035650-191035913;Right=chr4:191037595-191038075
chr4	CG	SV	191037595	191038075	31	+	.	ID=2965;Type=deletion;Left=chr4:191035650-191035913;Right=chr4:191037595-191038075
chr5	CG	SV	1231294	1234154	64	.	.	ID=2958;Type=deletion;Left=chr5:1231294-1231646+;Right=chr5:1233733-1234154+;Distance=2439;DiscordantMatePairAlignments=64;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs68151484 (chr5:1231294-1233733);Frequency=0.71
chr5	CG	SV	1231294	1231646	64	+	.	ID=2958;Type=deletion;Left=chr5:1231294-1231646;Right=chr5:1233733-1234154
chr5	CG	SV	1233733	1234154	64	+	.	ID=2958;Type=deletion;Left=chr5:1231294-1231646;Right=chr5:1233733-1234154
chr5	CG	SV	1977591	1978656	49	.	.	ID=2957;Type=deletion;Left=chr5:1977591-1978137+;Right=chr5:1978203-1978656+;Distance=612;DiscordantMatePairAlignments=49;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67696355 (chr5:1977591-1978203);Frequency=0.94
chr5	CG	SV	1977591	1978137	49	+	.	ID=2957;Type=deletion;Left=chr5:1977591-1978137;Right=chr5:1978203-1978656
chr5	CG	SV	1978203	1978656	49	+	.	ID=2957;Type=deletion;Left=chr5:1977591-1978137;Right=chr5:1978203-1978656
chr5	CG	SV	2021404	2025099	72	.	.	ID=2954;Type=deletion;Left=chr5:2021404-2022059+;Right=chr5:2024592-2025099+;Distance=3188;DiscordantMatePairAlignments=72;LeftRepeat=;RightRepeat=L1HS:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71809671 (chr5:2021413-2024601);Frequency=1.00
chr5	CG	SV	2021404	2022059	72	+	.	ID=2954;Type=deletion;Left=chr5:2021404-2022059;Right=chr5:2024592-2025099
chr5	CG	SV	2024592	2025099	72	+	.	ID=2954;Type=deletion;Left=chr5:2021404-2022059;Right=chr5:2024592-2025099
chr5	CG	SV	9464774	9465613	11	.	.	ID=2951;Type=deletion;Left=chr5:9464774-9465139+;Right=chr5:9465088-9465613+;Distance=314;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_003966;RightGenes=NM_003966;XRef=rs10528479 (chr5:9464774-9465088);Frequency=1.00
chr5	CG	SV	9464774	9465139	11	+	.	ID=2951;Type=deletion;Left=chr5:9464774-9465139;Right=chr5:9465088-9465613
chr5	CG	SV	9465088	9465613	11	+	.	ID=2951;Type=deletion;Left=chr5:9464774-9465139;Right=chr5:9465088-9465613
chr5	CG	SV	10692169	10693575	56	.	.	ID=2949;Type=deletion;Left=chr5:10692169-10692612+;Right=chr5:10693285-10693575+;Distance=1116;DiscordantMatePairAlignments=56;LeftRepeat=(CGCGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 31;RightRepeat=Self chain;LeftGenes=NM_001164440;RightGenes=NM_001164440;XRef=;Frequency=0.59
chr5	CG	SV	10692169	10692612	56	+	.	ID=2949;Type=deletion;Left=chr5:10692169-10692612;Right=chr5:10693285-10693575
chr5	CG	SV	10693285	10693575	56	+	.	ID=2949;Type=deletion;Left=chr5:10692169-10692612;Right=chr5:10693285-10693575
chr5	CG	SV	16203015	16204192	60	.	.	ID=2946;Type=deletion;Left=chr5:16203015-16203429+;Right=chr5:16203782-16204192+;Distance=767;DiscordantMatePairAlignments=60;LeftRepeat=L1ME3:LINE:L1;RightRepeat=;LeftGenes=NM_001102562;RightGenes=NM_001102562;XRef=rs67824855 (chr5:16203012-16203779);Frequency=0.00
chr5	CG	SV	16203015	16203429	60	+	.	ID=2946;Type=deletion;Left=chr5:16203015-16203429;Right=chr5:16203782-16204192
chr5	CG	SV	16203782	16204192	60	+	.	ID=2946;Type=deletion;Left=chr5:16203015-16203429;Right=chr5:16203782-16204192
chr5	CG	SV	17702086	17703164	52	.	.	ID=2942;Type=deletion;Left=chr5:17702086-17702445+;Right=chr5:17702820-17703164+;Distance=734;DiscordantMatePairAlignments=52;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	17702086	17702445	52	+	.	ID=2942;Type=deletion;Left=chr5:17702086-17702445;Right=chr5:17702820-17703164
chr5	CG	SV	17702820	17703164	52	+	.	ID=2942;Type=deletion;Left=chr5:17702086-17702445;Right=chr5:17702820-17703164
chr5	CG	SV	18909069	18911208	45	.	.	ID=2941;Type=deletion;Left=chr5:18909069-18909343+;Right=chr5:18910604-18911208+;Distance=1535;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67258051 (chr5:18909069-18910604);Frequency=0.00
chr5	CG	SV	18909069	18909343	45	+	.	ID=2941;Type=deletion;Left=chr5:18909069-18909343;Right=chr5:18910604-18911208
chr5	CG	SV	18910604	18911208	45	+	.	ID=2941;Type=deletion;Left=chr5:18909069-18909343;Right=chr5:18910604-18911208
chr5	CG	SV	25857539	25862761	18	.	.	ID=2826;Type=complex;Left=chr5:25857539-25857872+;Right=chr5:25862612-25862761+;Distance=5073;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=L1M4b:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	25857539	25857872	18	+	.	ID=2826;Type=complex;Left=chr5:25857539-25857872;Right=chr5:25862612-25862761
chr5	CG	SV	25862612	25862761	18	+	.	ID=2826;Type=complex;Left=chr5:25857539-25857872;Right=chr5:25862612-25862761
chr5	CG	SV	25857539	25860049	34	.	.	ID=2827;Type=complex;Left=chr5:25857539-25857861+;Right=chr5:25859705-25860049+;Distance=2166;DiscordantMatePairAlignments=34;LeftRepeat=;RightRepeat=LTR12E:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	25857539	25857861	34	+	.	ID=2827;Type=complex;Left=chr5:25857539-25857861;Right=chr5:25859705-25860049
chr5	CG	SV	25859705	25860049	34	+	.	ID=2827;Type=complex;Left=chr5:25857539-25857861;Right=chr5:25859705-25860049
chr5	CG	SV	25859371	25862759	13	.	.	ID=973;Type=complex;Left=chr5:25859371-25859705-;Right=chr5:25862619-25862759-;Distance=3054;DiscordantMatePairAlignments=13;LeftRepeat=LTR12E:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	25859371	25859705	13	-	.	ID=973;Type=complex;Left=chr5:25859371-25859705;Right=chr5:25862619-25862759
chr5	CG	SV	25862619	25862759	13	-	.	ID=973;Type=complex;Left=chr5:25859371-25859705;Right=chr5:25862619-25862759
chr5	CG	SV	26832458	26838177	120	.	.	ID=2824;Type=deletion;Left=chr5:26832458-26832920+;Right=chr5:26837656-26838177+;Distance=5198;DiscordantMatePairAlignments=120;LeftRepeat=L1MB7:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr5	CG	SV	26832458	26832920	120	+	.	ID=2824;Type=deletion;Left=chr5:26832458-26832920;Right=chr5:26837656-26838177
chr5	CG	SV	26837656	26838177	120	+	.	ID=2824;Type=deletion;Left=chr5:26832458-26832920;Right=chr5:26837656-26838177
chr5	CG	SV	29105074	29105382	13	.	.	ID=3692;Type=probable-inversion;Left=chr5:29105074-29105481+;Right=chr5:29105095-29105382-;Distance=308;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=THE1-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr5	CG	SV	29105074	29105481	13	+	.	ID=3692;Type=probable-inversion;Left=chr5:29105074-29105481;Right=chr5:29105095-29105382
chr5	CG	SV	29105095	29105382	13	+	.	ID=3692;Type=probable-inversion;Left=chr5:29105074-29105481;Right=chr5:29105095-29105382
chr5	CG	SV	30951280	30952383	45	.	.	ID=2823;Type=deletion;Left=chr5:30951280-30951773+;Right=chr5:30951816-30952383+;Distance=536;DiscordantMatePairAlignments=45;LeftRepeat=Self chain;Tigger2:DNA:MER2_type;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs67935057 (chr5:30951280-30951816);Frequency=0.35
chr5	CG	SV	30951280	30951773	45	+	.	ID=2823;Type=deletion;Left=chr5:30951280-30951773;Right=chr5:30951816-30952383
chr5	CG	SV	30951816	30952383	45	+	.	ID=2823;Type=deletion;Left=chr5:30951280-30951773;Right=chr5:30951816-30952383
chr5	CG	SV	32196943	32198638	10	.	.	ID=2821;Type=deletion;Left=chr5:32196943-32197380+;Right=chr5:32198368-32198638+;Distance=1425;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem A;RightRepeat=Self chain;LeftGenes=NM_022130;RightGenes=NM_022130;XRef=;Frequency=0.00
chr5	CG	SV	32196943	32197380	10	+	.	ID=2821;Type=deletion;Left=chr5:32196943-32197380;Right=chr5:32198368-32198638
chr5	CG	SV	32198368	32198638	10	+	.	ID=2821;Type=deletion;Left=chr5:32196943-32197380;Right=chr5:32198368-32198638
chr5	CG	SV	41635207	41636363	77	.	.	ID=2815;Type=deletion;Left=chr5:41635207-41635614+;Right=chr5:41635885-41636363+;Distance=678;DiscordantMatePairAlignments=77;LeftRepeat=L1HS:LINE:L1;RightRepeat=HAL1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71849228 (chr5:41635202-41635880);Frequency=0.18
chr5	CG	SV	41635207	41635614	77	+	.	ID=2815;Type=deletion;Left=chr5:41635207-41635614;Right=chr5:41635885-41636363
chr5	CG	SV	41635885	41636363	77	+	.	ID=2815;Type=deletion;Left=chr5:41635207-41635614;Right=chr5:41635885-41636363
chr5	CG	SV	41937678	41940034	66	.	.	ID=2813;Type=deletion;Left=chr5:41937678-41937946+;Right=chr5:41939475-41940034+;Distance=1797;DiscordantMatePairAlignments=66;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	41937678	41937946	66	+	.	ID=2813;Type=deletion;Left=chr5:41937678-41937946;Right=chr5:41939475-41940034
chr5	CG	SV	41939475	41940034	66	+	.	ID=2813;Type=deletion;Left=chr5:41937678-41937946;Right=chr5:41939475-41940034
chr5	CG	SV	44830753	44831972	32	.	.	ID=2811;Type=deletion;Left=chr5:44830753-44831084+;Right=chr5:44831330-44831972+;Distance=577;DiscordantMatePairAlignments=32;LeftRepeat=MER34C_:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72279874 (chr5:44830750-44831327);Frequency=0.47
chr5	CG	SV	44830753	44831084	32	+	.	ID=2811;Type=deletion;Left=chr5:44830753-44831084;Right=chr5:44831330-44831972
chr5	CG	SV	44831330	44831972	32	+	.	ID=2811;Type=deletion;Left=chr5:44830753-44831084;Right=chr5:44831330-44831972
chr5	CG	SV	57359235	57370027	44	.	.	ID=2805;Type=deletion;Left=chr5:57359235-57359767+;Right=chr5:57369537-57370027+;Distance=10302;DiscordantMatePairAlignments=44;LeftRepeat=;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr5	CG	SV	57359235	57359767	44	+	.	ID=2805;Type=deletion;Left=chr5:57359235-57359767;Right=chr5:57369537-57370027
chr5	CG	SV	57369537	57370027	44	+	.	ID=2805;Type=deletion;Left=chr5:57359235-57359767;Right=chr5:57369537-57370027
chr5	CG	SV	57715747	57722455	136	.	.	ID=2804;Type=deletion;Left=chr5:57715747-57716228+;Right=chr5:57721856-57722455+;Distance=6109;DiscordantMatePairAlignments=136;LeftRepeat=;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Tandem A;LeftGenes=;RightGenes=;XRef=rs67036290 (chr5:57715758-57721867);Frequency=1.00
chr5	CG	SV	57715747	57716228	136	+	.	ID=2804;Type=deletion;Left=chr5:57715747-57716228;Right=chr5:57721856-57722455
chr5	CG	SV	57721856	57722455	136	+	.	ID=2804;Type=deletion;Left=chr5:57715747-57716228;Right=chr5:57721856-57722455
chr5	CG	SV	57991615	57995648	67	.	.	ID=2803;Type=deletion;Left=chr5:57991615-57992149+;Right=chr5:57995266-57995648+;Distance=3651;DiscordantMatePairAlignments=67;LeftRepeat=AluJb:SINE:Alu;RightRepeat=L1M5:LINE:L1;LeftGenes=NM_138453;RightGenes=NM_138453;XRef=rs71775591 (chr5:57991614-57995265);Frequency=0.00
chr5	CG	SV	57991615	57992149	67	+	.	ID=2803;Type=deletion;Left=chr5:57991615-57992149;Right=chr5:57995266-57995648
chr5	CG	SV	57995266	57995648	67	+	.	ID=2803;Type=deletion;Left=chr5:57991615-57992149;Right=chr5:57995266-57995648
chr5	CG	SV	60037466	60039899	85	.	.	ID=2802;Type=deletion;Left=chr5:60037466-60037965+;Right=chr5:60039427-60039899+;Distance=1961;DiscordantMatePairAlignments=85;LeftRepeat=MLT1E3:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67780732 (chr5:60037461-60039422);Frequency=0.88
chr5	CG	SV	60037466	60037965	85	+	.	ID=2802;Type=deletion;Left=chr5:60037466-60037965;Right=chr5:60039427-60039899
chr5	CG	SV	60039427	60039899	85	+	.	ID=2802;Type=deletion;Left=chr5:60037466-60037965;Right=chr5:60039427-60039899
chr5	CG	SV	61783722	61785417	51	.	.	ID=2801;Type=deletion;Left=chr5:61783722-61784252+;Right=chr5:61785135-61785417+;Distance=1413;DiscordantMatePairAlignments=51;LeftRepeat=AluSg:SINE:Alu;RightRepeat=;LeftGenes=NM_001134779;NM_016338;RightGenes=NM_001134779;NM_016338;XRef=rs72252847 (chr5:61783717-61785130);Frequency=0.00
chr5	CG	SV	61783722	61784252	51	+	.	ID=2801;Type=deletion;Left=chr5:61783722-61784252;Right=chr5:61785135-61785417
chr5	CG	SV	61785135	61785417	51	+	.	ID=2801;Type=deletion;Left=chr5:61783722-61784252;Right=chr5:61785135-61785417
chr5	CG	SV	62203958	62205162	15	.	.	ID=971;Type=distal-duplication;Left=chr5:62203958-62204288-;Right=chr5:62205019-62205162-;Distance=874;DiscordantMatePairAlignments=15;LeftRepeat=L1MEe:LINE:L1;RightRepeat=L1MEe:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	62203958	62204288	15	-	.	ID=971;Type=distal-duplication;Left=chr5:62203958-62204288;Right=chr5:62205019-62205162
chr5	CG	SV	62205019	62205162	15	-	.	ID=971;Type=distal-duplication;Left=chr5:62203958-62204288;Right=chr5:62205019-62205162
chr5	CG	SV	62204298	62205162	14	.	.	ID=2800;Type=distal-duplication;Left=chr5:62204298-62204745+;Right=chr5:62205007-62205162+;Distance=709;DiscordantMatePairAlignments=14;LeftRepeat=L1MEe:LINE:L1;RightRepeat=L1MEe:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66579403 (chr5:62204297-62205006);Frequency=0.00
chr5	CG	SV	62204298	62204745	14	+	.	ID=2800;Type=distal-duplication;Left=chr5:62204298-62204745;Right=chr5:62205007-62205162
chr5	CG	SV	62205007	62205162	14	+	.	ID=2800;Type=distal-duplication;Left=chr5:62204298-62204745;Right=chr5:62205007-62205162
chr5	CG	SV	65063849	65066649	131	.	.	ID=2796;Type=deletion;Left=chr5:65063849-65064131+;Right=chr5:65066146-65066649+;Distance=2297;DiscordantMatePairAlignments=131;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_020726;RightGenes=NM_020726;XRef=rs71731346 (chr5:65063855-65066152);Frequency=0.65
chr5	CG	SV	65063849	65064131	131	+	.	ID=2796;Type=deletion;Left=chr5:65063849-65064131;Right=chr5:65066146-65066649
chr5	CG	SV	65066146	65066649	131	+	.	ID=2796;Type=deletion;Left=chr5:65063849-65064131;Right=chr5:65066146-65066649
chr5	CG	SV	68759803	68760708	12	.	.	ID=2793;Type=deletion;Left=chr5:68759803-68760294+;Right=chr5:68760254-68760708+;Distance=451;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_001038603;NM_144724;NR_029426;RightGenes=NM_001038603;NM_144724;NR_029426;XRef=;Frequency=0.94
chr5	CG	SV	68759803	68760294	12	+	.	ID=2793;Type=deletion;Left=chr5:68759803-68760294;Right=chr5:68760254-68760708
chr5	CG	SV	68760254	68760708	12	+	.	ID=2793;Type=deletion;Left=chr5:68759803-68760294;Right=chr5:68760254-68760708
chr5	CG	SV	86281760	86283369	81	.	.	ID=2786;Type=deletion;Left=chr5:86281760-86282153+;Right=chr5:86282898-86283369+;Distance=1138;DiscordantMatePairAlignments=81;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr5	CG	SV	86281760	86282153	81	+	.	ID=2786;Type=deletion;Left=chr5:86281760-86282153;Right=chr5:86282898-86283369
chr5	CG	SV	86282898	86283369	81	+	.	ID=2786;Type=deletion;Left=chr5:86281760-86282153;Right=chr5:86282898-86283369
chr5	CG	SV	87147851	87149300	10	.	.	ID=2785;Type=deletion;Left=chr5:87147851-87148017+;Right=chr5:87148776-87149300+;Distance=925;DiscordantMatePairAlignments=10;LeftRepeat=L1PA15:LINE:L1;RightRepeat=L1PA15:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	87147851	87148017	10	+	.	ID=2785;Type=deletion;Left=chr5:87147851-87148017;Right=chr5:87148776-87149300
chr5	CG	SV	87148776	87149300	10	+	.	ID=2785;Type=deletion;Left=chr5:87147851-87148017;Right=chr5:87148776-87149300
chr5	CG	SV	87414638	87418202	27	.	.	ID=2784;Type=deletion;Left=chr5:87414638-87414997+;Right=chr5:87417822-87418202+;Distance=3184;DiscordantMatePairAlignments=27;LeftRepeat=L1ME4a:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71648095 (chr5:87414638-87417822);Frequency=0.47
chr5	CG	SV	87414638	87414997	27	+	.	ID=2784;Type=deletion;Left=chr5:87414638-87414997;Right=chr5:87417822-87418202
chr5	CG	SV	87417822	87418202	27	+	.	ID=2784;Type=deletion;Left=chr5:87414638-87414997;Right=chr5:87417822-87418202
chr5	CG	SV	89824131	89824705	19	.	.	ID=969;Type=tandem-duplication;Left=chr5:89824131-89824419-;Right=chr5:89824442-89824705-;Distance=286;DiscordantMatePairAlignments=19;LeftRepeat=AluY:SINE:Alu;RightRepeat=Looper:DNA:PiggyBac;LeftGenes=NM_006467;RightGenes=NM_006467;XRef=;Frequency=0.35
chr5	CG	SV	89824131	89824419	19	-	.	ID=969;Type=tandem-duplication;Left=chr5:89824131-89824419;Right=chr5:89824442-89824705
chr5	CG	SV	89824442	89824705	19	-	.	ID=969;Type=tandem-duplication;Left=chr5:89824131-89824419;Right=chr5:89824442-89824705
chr5	CG	SV	90535531	90538319	102	.	.	ID=2780;Type=deletion;Left=chr5:90535531-90535950+;Right=chr5:90537854-90538319+;Distance=2323;DiscordantMatePairAlignments=102;LeftRepeat=L1ME2:LINE:L1;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=;RightGenes=;XRef=rs72404559 (chr5:90535531-90537854);Frequency=1.00
chr5	CG	SV	90535531	90535950	102	+	.	ID=2780;Type=deletion;Left=chr5:90535531-90535950;Right=chr5:90537854-90538319
chr5	CG	SV	90537854	90538319	102	+	.	ID=2780;Type=deletion;Left=chr5:90535531-90535950;Right=chr5:90537854-90538319
chr5	CG	SV	90660018	90662094	18	.	.	ID=2779;Type=deletion;Left=chr5:90660018-90660666+;Right=chr5:90661932-90662094+;Distance=1914;DiscordantMatePairAlignments=18;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSp:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	90660018	90660666	18	+	.	ID=2779;Type=deletion;Left=chr5:90660018-90660666;Right=chr5:90661932-90662094
chr5	CG	SV	90661932	90662094	18	+	.	ID=2779;Type=deletion;Left=chr5:90660018-90660666;Right=chr5:90661932-90662094
chr5	CG	SV	95369082	95369912	10	.	.	ID=2775;Type=deletion;Left=chr5:95369082-95369484+;Right=chr5:95369436-95369912+;Distance=354;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs6149125 (chr5:95369082-95369436);Frequency=1.00
chr5	CG	SV	95369082	95369484	10	+	.	ID=2775;Type=deletion;Left=chr5:95369082-95369484;Right=chr5:95369436-95369912
chr5	CG	SV	95369436	95369912	10	+	.	ID=2775;Type=deletion;Left=chr5:95369082-95369484;Right=chr5:95369436-95369912
chr5	CG	SV	97427319	97429029	70	.	.	ID=2773;Type=deletion;Left=chr5:97427319-97427750+;Right=chr5:97428518-97429029+;Distance=1199;DiscordantMatePairAlignments=70;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72125605 (chr5:97427319-97428518);Frequency=0.65
chr5	CG	SV	97427319	97427750	70	+	.	ID=2773;Type=deletion;Left=chr5:97427319-97427750;Right=chr5:97428518-97429029
chr5	CG	SV	97428518	97429029	70	+	.	ID=2773;Type=deletion;Left=chr5:97427319-97427750;Right=chr5:97428518-97429029
chr5	CG	SV	99120967	99121522	21	.	.	ID=968;Type=tandem-duplication;Left=chr5:99120967-99121222-;Right=chr5:99121342-99121522-;Distance=300;DiscordantMatePairAlignments=21;LeftRepeat=L1MDa:LINE:L1;Self chain;RightRepeat=L1MDa:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr5	CG	SV	99120967	99121222	21	-	.	ID=968;Type=tandem-duplication;Left=chr5:99120967-99121222;Right=chr5:99121342-99121522
chr5	CG	SV	99121342	99121522	21	-	.	ID=968;Type=tandem-duplication;Left=chr5:99120967-99121222;Right=chr5:99121342-99121522
chr5	CG	SV	99882491	99884220	48	.	.	ID=2769;Type=deletion;Left=chr5:99882491-99883000+;Right=chr5:99883826-99884220+;Distance=1335;DiscordantMatePairAlignments=48;LeftRepeat=L1PBb:LINE:L1;RightRepeat=L1PBb:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	99882491	99883000	48	+	.	ID=2769;Type=deletion;Left=chr5:99882491-99883000;Right=chr5:99883826-99884220
chr5	CG	SV	99883826	99884220	48	+	.	ID=2769;Type=deletion;Left=chr5:99882491-99883000;Right=chr5:99883826-99884220
chr5	CG	SV	103882187	103888747	80	.	.	ID=2767;Type=deletion;Left=chr5:103882187-103882578+;Right=chr5:103888239-103888747+;Distance=6052;DiscordantMatePairAlignments=80;LeftRepeat=L1HS:LINE:L1;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=rs67536216 (chr5:103882187-103888239);Frequency=0.88
chr5	CG	SV	103882187	103882578	80	+	.	ID=2767;Type=deletion;Left=chr5:103882187-103882578;Right=chr5:103888239-103888747
chr5	CG	SV	103888239	103888747	80	+	.	ID=2767;Type=deletion;Left=chr5:103882187-103882578;Right=chr5:103888239-103888747
chr5	CG	SV	106352650	106354893	71	.	.	ID=2766;Type=deletion;Left=chr5:106352650-106353132+;Right=chr5:106354342-106354893+;Distance=1692;DiscordantMatePairAlignments=71;LeftRepeat=LTR67:LTR:ERVL;RightRepeat=MER65A:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs72419952 (chr5:106352650-106354329);Frequency=0.65
chr5	CG	SV	106352650	106353132	71	+	.	ID=2766;Type=deletion;Left=chr5:106352650-106353132;Right=chr5:106354342-106354893
chr5	CG	SV	106354342	106354893	71	+	.	ID=2766;Type=deletion;Left=chr5:106352650-106353132;Right=chr5:106354342-106354893
chr5	CG	SV	108622982	108629452	100	.	.	ID=2765;Type=deletion;Left=chr5:108622982-108623539+;Right=chr5:108629029-108629452+;Distance=6047;DiscordantMatePairAlignments=100;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67479272 (chr5:108622973-108629020);Frequency=0.35
chr5	CG	SV	108622982	108623539	100	+	.	ID=2765;Type=deletion;Left=chr5:108622982-108623539;Right=chr5:108629029-108629452
chr5	CG	SV	108629029	108629452	100	+	.	ID=2765;Type=deletion;Left=chr5:108622982-108623539;Right=chr5:108629029-108629452
chr5	CG	SV	114784410	114786339	174	.	.	ID=2760;Type=deletion;Left=chr5:114784410-114784949+;Right=chr5:114785801-114786339+;Distance=1391;DiscordantMatePairAlignments=174;LeftRepeat=L1MC5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67261381 (chr5:114784414-114785805);Frequency=1.00
chr5	CG	SV	114784410	114784949	174	+	.	ID=2760;Type=deletion;Left=chr5:114784410-114784949;Right=chr5:114785801-114786339
chr5	CG	SV	114785801	114786339	174	+	.	ID=2760;Type=deletion;Left=chr5:114784410-114784949;Right=chr5:114785801-114786339
chr5	CG	SV	115374092	115378957	29	.	.	ID=315;Type=probable-inversion;Left=chr5:115374092-115374637-;Right=chr5:115378804-115378957+;Distance=4167;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=;LeftGenes=NM_173800;RightGenes=NM_173800;XRef=;Frequency=0.71
chr5	CG	SV	115374092	115374637	29	-	.	ID=315;Type=probable-inversion;Left=chr5:115374092-115374637;Right=chr5:115378804-115378957
chr5	CG	SV	115378804	115378957	29	-	.	ID=315;Type=probable-inversion;Left=chr5:115374092-115374637;Right=chr5:115378804-115378957
chr5	CG	SV	115483110	115485045	13	.	.	ID=2758;Type=deletion;Left=chr5:115483110-115483414+;Right=chr5:115484820-115485045+;Distance=1710;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=L1PA6:LINE:L1;LeftGenes=NM_016144;RightGenes=NM_016144;XRef=;Frequency=0.00
chr5	CG	SV	115483110	115483414	13	+	.	ID=2758;Type=deletion;Left=chr5:115483110-115483414;Right=chr5:115484820-115485045
chr5	CG	SV	115484820	115485045	13	+	.	ID=2758;Type=deletion;Left=chr5:115483110-115483414;Right=chr5:115484820-115485045
chr5	CG	SV	119408045	119410963	36	.	.	ID=2757;Type=deletion;Left=chr5:119408045-119408448+;Right=chr5:119410579-119410963+;Distance=2534;DiscordantMatePairAlignments=36;LeftRepeat=;RightRepeat=L1ME3A:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72401694 (chr5:119408045-119410576);Frequency=0.88
chr5	CG	SV	119408045	119408448	36	+	.	ID=2757;Type=deletion;Left=chr5:119408045-119408448;Right=chr5:119410579-119410963
chr5	CG	SV	119410579	119410963	36	+	.	ID=2757;Type=deletion;Left=chr5:119408045-119408448;Right=chr5:119410579-119410963
chr5	CG	SV	119938130	119939083	24	.	.	ID=2756;Type=deletion;Left=chr5:119938130-119938619+;Right=chr5:119938730-119939083+;Distance=600;DiscordantMatePairAlignments=24;LeftRepeat=AluSx:SINE:Alu;RightRepeat=MER44A:DNA:MER2_type;LeftGenes=NM_016644;RightGenes=NM_016644;XRef=;Frequency=0.00
chr5	CG	SV	119938130	119938619	24	+	.	ID=2756;Type=deletion;Left=chr5:119938130-119938619;Right=chr5:119938730-119939083
chr5	CG	SV	119938730	119939083	24	+	.	ID=2756;Type=deletion;Left=chr5:119938130-119938619;Right=chr5:119938730-119939083
chr5	CG	SV	121470310	121471231	11	.	.	ID=2755;Type=deletion;Left=chr5:121470310-121470734+;Right=chr5:121470723-121471231+;Distance=413;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	121470310	121470734	11	+	.	ID=2755;Type=deletion;Left=chr5:121470310-121470734;Right=chr5:121470723-121471231
chr5	CG	SV	121470723	121471231	11	+	.	ID=2755;Type=deletion;Left=chr5:121470310-121470734;Right=chr5:121470723-121471231
chr5	CG	SV	121604030	121609191	53	.	.	ID=2754;Type=deletion;Left=chr5:121604030-121604482+;Right=chr5:121608723-121609191+;Distance=4693;DiscordantMatePairAlignments=53;LeftRepeat=L1HS:LINE:L1;L1MA9:LINE:L1;RightRepeat=L1MA9:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr5	CG	SV	121604030	121604482	53	+	.	ID=2754;Type=deletion;Left=chr5:121604030-121604482;Right=chr5:121608723-121609191
chr5	CG	SV	121608723	121609191	53	+	.	ID=2754;Type=deletion;Left=chr5:121604030-121604482;Right=chr5:121608723-121609191
chr5	CG	SV	126486277	126487181	24	.	.	ID=2752;Type=deletion;Left=chr5:126486277-126486642+;Right=chr5:126486715-126487181+;Distance=438;DiscordantMatePairAlignments=24;LeftRepeat=HERV16:LTR:ERVL;RightRepeat=HERV16:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs67355812 (chr5:126486277-126486715);Frequency=0.82
chr5	CG	SV	126486277	126486642	24	+	.	ID=2752;Type=deletion;Left=chr5:126486277-126486642;Right=chr5:126486715-126487181
chr5	CG	SV	126486715	126487181	24	+	.	ID=2752;Type=deletion;Left=chr5:126486277-126486642;Right=chr5:126486715-126487181
chr5	CG	SV	127435342	127438960	15	.	.	ID=2751;Type=deletion;Left=chr5:127435342-127435822+;Right=chr5:127438819-127438960+;Distance=3477;DiscordantMatePairAlignments=15;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=NR_015360;RightGenes=NR_015360;XRef=;Frequency=0.24
chr5	CG	SV	127435342	127435822	15	+	.	ID=2751;Type=deletion;Left=chr5:127435342-127435822;Right=chr5:127438819-127438960
chr5	CG	SV	127438819	127438960	15	+	.	ID=2751;Type=deletion;Left=chr5:127435342-127435822;Right=chr5:127438819-127438960
chr5	CG	SV	127804626	127806765	40	.	.	ID=2750;Type=deletion;Left=chr5:127804626-127804933+;Right=chr5:127806206-127806765+;Distance=1580;DiscordantMatePairAlignments=40;LeftRepeat=;RightRepeat=;LeftGenes=NM_001999;RightGenes=NM_001999;XRef=;Frequency=0.00
chr5	CG	SV	127804626	127804933	40	+	.	ID=2750;Type=deletion;Left=chr5:127804626-127804933;Right=chr5:127806206-127806765
chr5	CG	SV	127806206	127806765	40	+	.	ID=2750;Type=deletion;Left=chr5:127804626-127804933;Right=chr5:127806206-127806765
chr5	CG	SV	133265958	133267518	26	.	.	ID=2746;Type=deletion;Left=chr5:133265958-133266534+;Right=chr5:133267180-133267518+;Distance=1222;DiscordantMatePairAlignments=26;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	133265958	133266534	26	+	.	ID=2746;Type=deletion;Left=chr5:133265958-133266534;Right=chr5:133267180-133267518
chr5	CG	SV	133267180	133267518	26	+	.	ID=2746;Type=deletion;Left=chr5:133265958-133266534;Right=chr5:133267180-133267518
chr5	CG	SV	136882600	136884675	48	.	.	ID=2745;Type=deletion;Left=chr5:136882600-136882910+;Right=chr5:136884316-136884675+;Distance=1716;DiscordantMatePairAlignments=48;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg/x:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67020614 (chr5:136882557-136884273);Frequency=1.00
chr5	CG	SV	136882600	136882910	48	+	.	ID=2745;Type=deletion;Left=chr5:136882600-136882910;Right=chr5:136884316-136884675
chr5	CG	SV	136884316	136884675	48	+	.	ID=2745;Type=deletion;Left=chr5:136882600-136882910;Right=chr5:136884316-136884675
chr5	CG	SV	137050468	137052321	189	.	.	ID=2744;Type=deletion;Left=chr5:137050468-137051086+;Right=chr5:137051792-137052321+;Distance=1324;DiscordantMatePairAlignments=189;LeftRepeat=;RightRepeat=;LeftGenes=NM_017415;RightGenes=NM_017415;XRef=rs72257455 (chr5:137050461-137051785);Frequency=0.82
chr5	CG	SV	137050468	137051086	189	+	.	ID=2744;Type=deletion;Left=chr5:137050468-137051086;Right=chr5:137051792-137052321
chr5	CG	SV	137051792	137052321	189	+	.	ID=2744;Type=deletion;Left=chr5:137050468-137051086;Right=chr5:137051792-137052321
chr5	CG	SV	143492320	143495244	85	.	.	ID=966;Type=distal-duplication;Left=chr5:143492320-143492681-;Right=chr5:143494803-143495244-;Distance=2563;DiscordantMatePairAlignments=85;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	143492320	143492681	85	-	.	ID=966;Type=distal-duplication;Left=chr5:143492320-143492681;Right=chr5:143494803-143495244
chr5	CG	SV	143494803	143495244	85	-	.	ID=966;Type=distal-duplication;Left=chr5:143492320-143492681;Right=chr5:143494803-143495244
chr5	CG	SV	143493060	143495680	70	.	.	ID=2743;Type=distal-duplication;Left=chr5:143493060-143493424+;Right=chr5:143495240-143495680+;Distance=2180;DiscordantMatePairAlignments=70;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	143493060	143493424	70	+	.	ID=2743;Type=distal-duplication;Left=chr5:143493060-143493424;Right=chr5:143495240-143495680
chr5	CG	SV	143495240	143495680	70	+	.	ID=2743;Type=distal-duplication;Left=chr5:143493060-143493424;Right=chr5:143495240-143495680
chr5	CG	SV	145772664	145773989	10	.	.	ID=2742;Type=deletion;Left=chr5:145772664-145773152+;Right=chr5:145773639-145773989+;Distance=975;DiscordantMatePairAlignments=10;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	145772664	145773152	10	+	.	ID=2742;Type=deletion;Left=chr5:145772664-145773152;Right=chr5:145773639-145773989
chr5	CG	SV	145773639	145773989	10	+	.	ID=2742;Type=deletion;Left=chr5:145772664-145773152;Right=chr5:145773639-145773989
chr5	CG	SV	147533232	147534808	84	.	.	ID=3689;Type=complex;Left=chr5:147533232-147533709+;Right=chr5:147534433-147534808-;Distance=1576;DiscordantMatePairAlignments=84;LeftRepeat=;RightRepeat=;LeftGenes=NM_001001325;RightGenes=NM_001001325;XRef=;Frequency=1.00
chr5	CG	SV	147533232	147533709	84	+	.	ID=3689;Type=complex;Left=chr5:147533232-147533709;Right=chr5:147534433-147534808
chr5	CG	SV	147534433	147534808	84	+	.	ID=3689;Type=complex;Left=chr5:147533232-147533709;Right=chr5:147534433-147534808
chr5	CG	SV	147534059	147535470	72	.	.	ID=313;Type=complex;Left=chr5:147534059-147534432-;Right=chr5:147534971-147535470+;Distance=539;DiscordantMatePairAlignments=72;LeftRepeat=;RightRepeat=MIR3:SINE:MIR;LeftGenes=NM_001001325;RightGenes=NM_001001325;XRef=;Frequency=1.00
chr5	CG	SV	147534059	147534432	72	-	.	ID=313;Type=complex;Left=chr5:147534059-147534432;Right=chr5:147534971-147535470
chr5	CG	SV	147534971	147535470	72	-	.	ID=313;Type=complex;Left=chr5:147534059-147534432;Right=chr5:147534971-147535470
chr5	CG	SV	149421934	149422789	34	.	.	ID=2740;Type=deletion;Left=chr5:149421934-149422473+;Right=chr5:149422359-149422789+;Distance=425;DiscordantMatePairAlignments=34;LeftRepeat=;RightRepeat=L1MB2:LINE:L1;LeftGenes=NM_005211;RightGenes=NM_005211;XRef=rs72300570 (chr5:149421931-149422356);Frequency=0.18
chr5	CG	SV	149421934	149422473	34	+	.	ID=2740;Type=deletion;Left=chr5:149421934-149422473;Right=chr5:149422359-149422789
chr5	CG	SV	149422359	149422789	34	+	.	ID=2740;Type=deletion;Left=chr5:149421934-149422473;Right=chr5:149422359-149422789
chr5	CG	SV	150157855	150162266	13	.	.	ID=2739;Type=deletion;Left=chr5:150157855-150158326+;Right=chr5:150161793-150162266+;Distance=3938;DiscordantMatePairAlignments=13;LeftRepeat=MLT1A0:LTR:MaLR;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs72130363 (chr5:150157854-150161792);Frequency=0.06
chr5	CG	SV	150157855	150158326	13	+	.	ID=2739;Type=deletion;Left=chr5:150157855-150158326;Right=chr5:150161793-150162266
chr5	CG	SV	150161793	150162266	13	+	.	ID=2739;Type=deletion;Left=chr5:150157855-150158326;Right=chr5:150161793-150162266
chr5	CG	SV	150861224	150863764	58	.	.	ID=2737;Type=deletion;Left=chr5:150861224-150861739+;Right=chr5:150863409-150863764+;Distance=2185;DiscordantMatePairAlignments=58;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	150861224	150861739	58	+	.	ID=2737;Type=deletion;Left=chr5:150861224-150861739;Right=chr5:150863409-150863764
chr5	CG	SV	150863409	150863764	58	+	.	ID=2737;Type=deletion;Left=chr5:150861224-150861739;Right=chr5:150863409-150863764
chr5	CG	SV	151436615	151443124	119	.	.	ID=2735;Type=deletion;Left=chr5:151436615-151437164+;Right=chr5:151442649-151443124+;Distance=6034;DiscordantMatePairAlignments=119;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70950672 (chr5:151436623-151442657);Frequency=0.88
chr5	CG	SV	151436615	151437164	119	+	.	ID=2735;Type=deletion;Left=chr5:151436615-151437164;Right=chr5:151442649-151443124
chr5	CG	SV	151442649	151443124	119	+	.	ID=2735;Type=deletion;Left=chr5:151436615-151437164;Right=chr5:151442649-151443124
chr5	CG	SV	153785766	153787810	10	.	.	ID=2734;Type=deletion;Left=chr5:153785766-153786217+;Right=chr5:153787596-153787810+;Distance=1830;DiscordantMatePairAlignments=10;LeftRepeat=L1M4b:LINE:L1;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr5	CG	SV	153785766	153786217	10	+	.	ID=2734;Type=deletion;Left=chr5:153785766-153786217;Right=chr5:153787596-153787810
chr5	CG	SV	153787596	153787810	10	+	.	ID=2734;Type=deletion;Left=chr5:153785766-153786217;Right=chr5:153787596-153787810
chr5	CG	SV	155244365	155245640	168	.	.	ID=2733;Type=deletion;Left=chr5:155244365-155244907+;Right=chr5:155245156-155245640+;Distance=791;DiscordantMatePairAlignments=168;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67412768 (chr5:155244361-155245152);Frequency=0.53
chr5	CG	SV	155244365	155244907	168	+	.	ID=2733;Type=deletion;Left=chr5:155244365-155244907;Right=chr5:155245156-155245640
chr5	CG	SV	155245156	155245640	168	+	.	ID=2733;Type=deletion;Left=chr5:155244365-155244907;Right=chr5:155245156-155245640
chr5	CG	SV	155421507	155427706	71	.	.	ID=2732;Type=deletion;Left=chr5:155421507-155421921+;Right=chr5:155427559-155427706+;Distance=6052;DiscordantMatePairAlignments=71;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr5	CG	SV	155421507	155421921	71	+	.	ID=2732;Type=deletion;Left=chr5:155421507-155421921;Right=chr5:155427559-155427706
chr5	CG	SV	155427559	155427706	71	+	.	ID=2732;Type=deletion;Left=chr5:155421507-155421921;Right=chr5:155427559-155427706
chr5	CG	SV	158524986	158525876	12	.	.	ID=2731;Type=deletion;Left=chr5:158524986-158525531+;Right=chr5:158525331-158525876+;Distance=345;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_144726;RightGenes=NM_144726;XRef=rs66989512 (chr5:158524986-158525331);Frequency=0.82
chr5	CG	SV	158524986	158525531	12	+	.	ID=2731;Type=deletion;Left=chr5:158524986-158525531;Right=chr5:158525331-158525876
chr5	CG	SV	158525331	158525876	12	+	.	ID=2731;Type=deletion;Left=chr5:158524986-158525531;Right=chr5:158525331-158525876
chr5	CG	SV	165771461	165783080	54	.	.	ID=2729;Type=deletion;Left=chr5:165771461-165771904+;Right=chr5:165782543-165783080+;Distance=11082;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=MER31A:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	165771461	165771904	54	+	.	ID=2729;Type=deletion;Left=chr5:165771461-165771904;Right=chr5:165782543-165783080
chr5	CG	SV	165782543	165783080	54	+	.	ID=2729;Type=deletion;Left=chr5:165771461-165771904;Right=chr5:165782543-165783080
chr5	CG	SV	174062662	174064892	17	.	.	ID=2724;Type=deletion;Left=chr5:174062662-174063168+;Right=chr5:174064650-174064892+;Distance=1988;DiscordantMatePairAlignments=17;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	174062662	174063168	17	+	.	ID=2724;Type=deletion;Left=chr5:174062662-174063168;Right=chr5:174064650-174064892
chr5	CG	SV	174064650	174064892	17	+	.	ID=2724;Type=deletion;Left=chr5:174062662-174063168;Right=chr5:174064650-174064892
chr5	CG	SV	176427653	176429183	38	.	.	ID=2722;Type=deletion;Left=chr5:176427653-176428063+;Right=chr5:176428883-176429183+;Distance=1230;DiscordantMatePairAlignments=38;LeftRepeat=MIR:SINE:MIR;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs71952577 (chr5:176427653-176428883);Frequency=0.25
chr5	CG	SV	176427653	176428063	38	+	.	ID=2722;Type=deletion;Left=chr5:176427653-176428063;Right=chr5:176428883-176429183
chr5	CG	SV	176428883	176429183	38	+	.	ID=2722;Type=deletion;Left=chr5:176427653-176428063;Right=chr5:176428883-176429183
chr5	CG	SV	176468052	176468676	13	.	.	ID=2721;Type=deletion;Left=chr5:176468052-176468613+;Right=chr5:176468503-176468676+;Distance=451;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72441585 (chr5:176467815-176468262);Frequency=0.24
chr5	CG	SV	176468052	176468613	13	+	.	ID=2721;Type=deletion;Left=chr5:176468052-176468613;Right=chr5:176468503-176468676
chr5	CG	SV	176468503	176468676	13	+	.	ID=2721;Type=deletion;Left=chr5:176468052-176468613;Right=chr5:176468503-176468676
chr5	CG	SV	177884680	177885747	64	.	.	ID=2720;Type=deletion;Left=chr5:177884680-177885216+;Right=chr5:177885340-177885747+;Distance=660;DiscordantMatePairAlignments=64;LeftRepeat=MIRb:SINE:MIR;Self chain;Tandem period 60;RightRepeat=Self chain;Tandem period 60;LeftGenes=NM_173465;RightGenes=NM_173465;XRef=rs67953823 (chr5:177884626-177885226);Frequency=0.59
chr5	CG	SV	177884680	177885216	64	+	.	ID=2720;Type=deletion;Left=chr5:177884680-177885216;Right=chr5:177885340-177885747
chr5	CG	SV	177885340	177885747	64	+	.	ID=2720;Type=deletion;Left=chr5:177884680-177885216;Right=chr5:177885340-177885747
chr5	CG	SV	180501840	180502966	41	.	.	ID=2719;Type=deletion;Left=chr5:180501840-180502190+;Right=chr5:180502585-180502966+;Distance=745;DiscordantMatePairAlignments=41;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67335144 (chr5:180501840-180502585);Frequency=0.24
chr5	CG	SV	180501840	180502190	41	+	.	ID=2719;Type=deletion;Left=chr5:180501840-180502190;Right=chr5:180502585-180502966
chr5	CG	SV	180502585	180502966	41	+	.	ID=2719;Type=deletion;Left=chr5:180501840-180502190;Right=chr5:180502585-180502966
chr5	CG	SV	180612927	180614473	35	.	.	ID=2718;Type=deletion;Left=chr5:180612927-180613553+;Right=chr5:180614266-180614473+;Distance=1339;DiscordantMatePairAlignments=35;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	180612927	180613553	35	+	.	ID=2718;Type=deletion;Left=chr5:180612927-180613553;Right=chr5:180614266-180614473
chr5	CG	SV	180614266	180614473	35	+	.	ID=2718;Type=deletion;Left=chr5:180612927-180613553;Right=chr5:180614266-180614473
chr6	CG	SV	611376	613349	87	.	.	ID=2716;Type=deletion;Left=chr6:611376-611745+;Right=chr6:612821-613349+;Distance=1445;DiscordantMatePairAlignments=87;LeftRepeat=;RightRepeat=MLT2B3:LTR:ERVL;LeftGenes=NM_018303;RightGenes=NM_018303;XRef=;Frequency=0.88
chr6	CG	SV	611376	611745	87	+	.	ID=2716;Type=deletion;Left=chr6:611376-611745;Right=chr6:612821-613349
chr6	CG	SV	612821	613349	87	+	.	ID=2716;Type=deletion;Left=chr6:611376-611745;Right=chr6:612821-613349
chr6	CG	SV	807031	809104	43	.	.	ID=2715;Type=deletion;Left=chr6:807031-807389+;Right=chr6:808777-809104+;Distance=1746;DiscordantMatePairAlignments=43;LeftRepeat=Self chain;Tandem period 97;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	807031	807389	43	+	.	ID=2715;Type=deletion;Left=chr6:807031-807389;Right=chr6:808777-809104
chr6	CG	SV	808777	809104	43	+	.	ID=2715;Type=deletion;Left=chr6:807031-807389;Right=chr6:808777-809104
chr6	CG	SV	3140392	3141319	52	.	.	ID=2713;Type=deletion;Left=chr6:3140392-3140798+;Right=chr6:3140953-3141319+;Distance=561;DiscordantMatePairAlignments=52;LeftRepeat=;RightRepeat=MSTA:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs66941813 (chr6:3140392-3140953);Frequency=0.00
chr6	CG	SV	3140392	3140798	52	+	.	ID=2713;Type=deletion;Left=chr6:3140392-3140798;Right=chr6:3140953-3141319
chr6	CG	SV	3140953	3141319	52	+	.	ID=2713;Type=deletion;Left=chr6:3140392-3140798;Right=chr6:3140953-3141319
chr6	CG	SV	5080248	5081016	44	.	.	ID=2711;Type=deletion;Left=chr6:5080248-5080677+;Right=chr6:5080781-5081016+;Distance=533;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;Tandem period 28;Tandem period 84;RightRepeat=Self chain;Tandem period 28;Tandem period 84;LeftGenes=NM_001164841;NM_020408;RightGenes=NM_001164841;NM_020408;XRef=;Frequency=0.88
chr6	CG	SV	5080248	5080677	44	+	.	ID=2711;Type=deletion;Left=chr6:5080248-5080677;Right=chr6:5080781-5081016
chr6	CG	SV	5080781	5081016	44	+	.	ID=2711;Type=deletion;Left=chr6:5080248-5080677;Right=chr6:5080781-5081016
chr6	CG	SV	5843448	5844240	29	.	.	ID=2710;Type=deletion;Left=chr6:5843448-5843959+;Right=chr6:5843876-5844240+;Distance=428;DiscordantMatePairAlignments=29;LeftRepeat=HERV16:LTR:ERVL;RightRepeat=HERV16:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs67009989 (chr6:5843446-5843874);Frequency=0.59
chr6	CG	SV	5843448	5843959	29	+	.	ID=2710;Type=deletion;Left=chr6:5843448-5843959;Right=chr6:5843876-5844240
chr6	CG	SV	5843876	5844240	29	+	.	ID=2710;Type=deletion;Left=chr6:5843448-5843959;Right=chr6:5843876-5844240
chr6	CG	SV	8282741	8286745	44	.	.	ID=2708;Type=deletion;Left=chr6:8282741-8283170+;Right=chr6:8286586-8286745+;Distance=3845;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71688184 (chr6:8282741-8286586);Frequency=0.24
chr6	CG	SV	8282741	8283170	44	+	.	ID=2708;Type=deletion;Left=chr6:8282741-8283170;Right=chr6:8286586-8286745
chr6	CG	SV	8286586	8286745	44	+	.	ID=2708;Type=deletion;Left=chr6:8282741-8283170;Right=chr6:8286586-8286745
chr6	CG	SV	9381801	9383425	69	.	.	ID=2707;Type=deletion;Left=chr6:9381801-9382241+;Right=chr6:9382936-9383425+;Distance=1135;DiscordantMatePairAlignments=69;LeftRepeat=;RightRepeat=MLT1A-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr6	CG	SV	9381801	9382241	69	+	.	ID=2707;Type=deletion;Left=chr6:9381801-9382241;Right=chr6:9382936-9383425
chr6	CG	SV	9382936	9383425	69	+	.	ID=2707;Type=deletion;Left=chr6:9381801-9382241;Right=chr6:9382936-9383425
chr6	CG	SV	11664092	11665092	12	.	.	ID=2705;Type=deletion;Left=chr6:11664092-11664413+;Right=chr6:11664412-11665092+;Distance=320;DiscordantMatePairAlignments=12;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1MCc:LINE:L1;LeftGenes=NM_001100829;RightGenes=NM_001100829;XRef=;Frequency=1.00
chr6	CG	SV	11664092	11664413	12	+	.	ID=2705;Type=deletion;Left=chr6:11664092-11664413;Right=chr6:11664412-11665092
chr6	CG	SV	11664412	11665092	12	+	.	ID=2705;Type=deletion;Left=chr6:11664092-11664413;Right=chr6:11664412-11665092
chr6	CG	SV	18510069	18511331	56	.	.	ID=2703;Type=deletion;Left=chr6:18510069-18510508+;Right=chr6:18510849-18511331+;Distance=780;DiscordantMatePairAlignments=56;LeftRepeat=;RightRepeat=MER103:DNA:DNA;LeftGenes=NM_182757;RightGenes=NM_182757;XRef=rs66988260 (chr6:18510069-18510849);Frequency=0.94
chr6	CG	SV	18510069	18510508	56	+	.	ID=2703;Type=deletion;Left=chr6:18510069-18510508;Right=chr6:18510849-18511331
chr6	CG	SV	18510849	18511331	56	+	.	ID=2703;Type=deletion;Left=chr6:18510069-18510508;Right=chr6:18510849-18511331
chr6	CG	SV	19254501	19255432	54	.	.	ID=959;Type=tandem-duplication;Left=chr6:19254501-19254951-;Right=chr6:19254999-19255432-;Distance=481;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	19254501	19254951	54	-	.	ID=959;Type=tandem-duplication;Left=chr6:19254501-19254951;Right=chr6:19254999-19255432
chr6	CG	SV	19254999	19255432	54	-	.	ID=959;Type=tandem-duplication;Left=chr6:19254501-19254951;Right=chr6:19254999-19255432
chr6	CG	SV	19784585	19785777	12	.	.	ID=2702;Type=deletion;Left=chr6:19784585-19784987+;Right=chr6:19785625-19785777+;Distance=1040;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr6	CG	SV	19784585	19784987	12	+	.	ID=2702;Type=deletion;Left=chr6:19784585-19784987;Right=chr6:19785625-19785777
chr6	CG	SV	19785625	19785777	12	+	.	ID=2702;Type=deletion;Left=chr6:19784585-19784987;Right=chr6:19785625-19785777
chr6	CG	SV	23568305	23574023	66	.	.	ID=2698;Type=deletion;Left=chr6:23568305-23568823+;Right=chr6:23573416-23574023+;Distance=5111;DiscordantMatePairAlignments=66;LeftRepeat=MIR3:SINE:MIR;RightRepeat=L1MC3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	23568305	23568823	66	+	.	ID=2698;Type=deletion;Left=chr6:23568305-23568823;Right=chr6:23573416-23574023
chr6	CG	SV	23573416	23574023	66	+	.	ID=2698;Type=deletion;Left=chr6:23568305-23568823;Right=chr6:23573416-23574023
chr6	CG	SV	25755688	25755905	47	.	.	ID=3685;Type=probable-inversion;Left=chr6:25755688-25756194+;Right=chr6:25755685-25755905-;Distance=217;DiscordantMatePairAlignments=47;LeftRepeat=L1ME4a:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	25755688	25756194	47	+	.	ID=3685;Type=probable-inversion;Left=chr6:25755688-25756194;Right=chr6:25755685-25755905
chr6	CG	SV	25755685	25755905	47	+	.	ID=3685;Type=probable-inversion;Left=chr6:25755688-25756194;Right=chr6:25755685-25755905
chr6	CG	SV	28298186	28299087	12	.	.	ID=2692;Type=deletion;Left=chr6:28298186-28298649+;Right=chr6:28298523-28299087+;Distance=337;DiscordantMatePairAlignments=12;LeftRepeat=LTR39:LTR:ERV1;Self chain;Tandem T;RightRepeat=LTR39:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs66632140 (chr6:28298174-28298511);Frequency=0.59
chr6	CG	SV	28298186	28298649	12	+	.	ID=2692;Type=deletion;Left=chr6:28298186-28298649;Right=chr6:28298523-28299087
chr6	CG	SV	28298523	28299087	12	+	.	ID=2692;Type=deletion;Left=chr6:28298186-28298649;Right=chr6:28298523-28299087
chr6	CG	SV	29741028	29741957	11	.	.	ID=309;Type=probable-inversion;Left=chr6:29741028-29741186-;Right=chr6:29741588-29741957+;Distance=402;DiscordantMatePairAlignments=11;LeftRepeat=Charlie4a:DNA:MER1_type;Self chain;RightRepeat=Charlie4:DNA:MER1_type;Self chain;LeftGenes=NM_001008228;NM_001008229;NM_002433;NM_206809;NM_206810;NM_206811;NM_206812;NM_206813;NM_206814;RightGenes=NM_001008228;NM_001008229;NM_002433;NM_206809;NM_206810;NM_206811;NM_206812;NM_206813;NM_206814;XRef=;Frequency=0.15
chr6	CG	SV	29741028	29741186	11	-	.	ID=309;Type=probable-inversion;Left=chr6:29741028-29741186;Right=chr6:29741588-29741957
chr6	CG	SV	29741588	29741957	11	-	.	ID=309;Type=probable-inversion;Left=chr6:29741028-29741186;Right=chr6:29741588-29741957
chr6	CG	SV	29793461	29796733	88	.	.	ID=2691;Type=deletion;Left=chr6:29793461-29793877+;Right=chr6:29796072-29796733+;Distance=2611;DiscordantMatePairAlignments=88;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71757463 (chr6:29793467-29796078);Frequency=0.94
chr6	CG	SV	29793461	29793877	88	+	.	ID=2691;Type=deletion;Left=chr6:29793461-29793877;Right=chr6:29796072-29796733
chr6	CG	SV	29796072	29796733	88	+	.	ID=2691;Type=deletion;Left=chr6:29793461-29793877;Right=chr6:29796072-29796733
chr6	CG	SV	29923073	29924068	29	.	.	ID=2690;Type=deletion;Left=chr6:29923073-29923672+;Right=chr6:29923569-29924068+;Distance=496;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;Tandem period 124;RightRepeat=Self chain;Tandem period 124;LeftGenes=;RightGenes=;XRef=rs6149501 (chr6:29922962-29923334);Frequency=0.94
chr6	CG	SV	29923073	29923672	29	+	.	ID=2690;Type=deletion;Left=chr6:29923073-29923672;Right=chr6:29923569-29924068
chr6	CG	SV	29923569	29924068	29	+	.	ID=2690;Type=deletion;Left=chr6:29923073-29923672;Right=chr6:29923569-29924068
chr6	CG	SV	30007761	30009894	19	.	.	ID=2689;Type=deletion;Left=chr6:30007761-30008313+;Right=chr6:30009519-30009894+;Distance=1758;DiscordantMatePairAlignments=19;LeftRepeat=(TCTCCC)n:Simple_repeat:Simple_repeat;Self chain;Tandem CCCTCT;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10705419 (chr6:30007761-30009519);Frequency=0.88
chr6	CG	SV	30007761	30008313	19	+	.	ID=2689;Type=deletion;Left=chr6:30007761-30008313;Right=chr6:30009519-30009894
chr6	CG	SV	30009519	30009894	19	+	.	ID=2689;Type=deletion;Left=chr6:30007761-30008313;Right=chr6:30009519-30009894
chr6	CG	SV	31319607	31321542	97	.	.	ID=2684;Type=deletion;Left=chr6:31319607-31319976+;Right=chr6:31321107-31321542+;Distance=1500;DiscordantMatePairAlignments=97;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs70976632 (chr6:31319609-31321109);Frequency=1.00
chr6	CG	SV	31319607	31319976	97	+	.	ID=2684;Type=deletion;Left=chr6:31319607-31319976;Right=chr6:31321107-31321542
chr6	CG	SV	31321107	31321542	97	+	.	ID=2684;Type=deletion;Left=chr6:31319607-31319976;Right=chr6:31321107-31321542
chr6	CG	SV	32669943	32672970	36	.	.	ID=2679;Type=deletion;Left=chr6:32669943-32670451+;Right=chr6:32672596-32672970+;Distance=2653;DiscordantMatePairAlignments=36;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67656219 (chr6:32669943-32672596);Frequency=0.94
chr6	CG	SV	32669943	32670451	36	+	.	ID=2679;Type=deletion;Left=chr6:32669943-32670451;Right=chr6:32672596-32672970
chr6	CG	SV	32672596	32672970	36	+	.	ID=2679;Type=deletion;Left=chr6:32669943-32670451;Right=chr6:32672596-32672970
chr6	CG	SV	32886733	32888241	89	.	.	ID=2677;Type=deletion;Left=chr6:32886733-32887316+;Right=chr6:32887798-32888241+;Distance=1065;DiscordantMatePairAlignments=89;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=L1MC5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs70976641 (chr6:32886732-32887798);Frequency=0.94
chr6	CG	SV	32886733	32887316	89	+	.	ID=2677;Type=deletion;Left=chr6:32886733-32887316;Right=chr6:32887798-32888241
chr6	CG	SV	32887798	32888241	89	+	.	ID=2677;Type=deletion;Left=chr6:32886733-32887316;Right=chr6:32887798-32888241
chr6	CG	SV	33691176	33694245	133	.	.	ID=2674;Type=deletion;Left=chr6:33691176-33691690+;Right=chr6:33693823-33694245+;Distance=2647;DiscordantMatePairAlignments=133;LeftRepeat=AluSq:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72069483 (chr6:33691176-33693823);Frequency=0.53
chr6	CG	SV	33691176	33691690	133	+	.	ID=2674;Type=deletion;Left=chr6:33691176-33691690;Right=chr6:33693823-33694245
chr6	CG	SV	33693823	33694245	133	+	.	ID=2674;Type=deletion;Left=chr6:33691176-33691690;Right=chr6:33693823-33694245
chr6	CG	SV	33903612	33903972	24	+	.	ID=2479;Type=interchromosomal;Left=chr6:33903612-33903972+;Right=chr12:107786499-107786935+;Distance=;DiscordantMatePairAlignments=24;LeftRepeat=MLT1H1:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	107786499	107786935	24	+	.	ID=2479;Type=interchromosomal;Left=chr6:33903612-33903972+;Right=chr12:107786499-107786935+;Distance=;DiscordantMatePairAlignments=24;LeftRepeat=MLT1H1:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	34425053	34427892	30	.	.	ID=2673;Type=deletion;Left=chr6:34425053-34425543+;Right=chr6:34427579-34427892+;Distance=2526;DiscordantMatePairAlignments=30;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_006703;RightGenes=NM_006703;XRef=;Frequency=0.00
chr6	CG	SV	34425053	34425543	30	+	.	ID=2673;Type=deletion;Left=chr6:34425053-34425543;Right=chr6:34427579-34427892
chr6	CG	SV	34427579	34427892	30	+	.	ID=2673;Type=deletion;Left=chr6:34425053-34425543;Right=chr6:34427579-34427892
chr6	CG	SV	34807900	34809566	32	.	.	ID=2672;Type=deletion;Left=chr6:34807900-34808217+;Right=chr6:34809096-34809566+;Distance=1196;DiscordantMatePairAlignments=32;LeftRepeat=MIRb:SINE:MIR;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr6	CG	SV	34807900	34808217	32	+	.	ID=2672;Type=deletion;Left=chr6:34807900-34808217;Right=chr6:34809096-34809566
chr6	CG	SV	34809096	34809566	32	+	.	ID=2672;Type=deletion;Left=chr6:34807900-34808217;Right=chr6:34809096-34809566
chr6	CG	SV	35734412	35738033	24	.	.	ID=2671;Type=deletion;Left=chr6:35734412-35734672+;Right=chr6:35737724-35738033+;Distance=3312;DiscordantMatePairAlignments=24;LeftRepeat=L1M4:LINE:L1;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_001145775;NM_001145776;NM_001145777;NM_004117;RightGenes=NM_001145775;NM_001145776;NM_001145777;NM_004117;XRef=rs67674318 (chr6:35734410-35737722);Frequency=0.82
chr6	CG	SV	35734412	35734672	24	+	.	ID=2671;Type=deletion;Left=chr6:35734412-35734672;Right=chr6:35737724-35738033
chr6	CG	SV	35737724	35738033	24	+	.	ID=2671;Type=deletion;Left=chr6:35734412-35734672;Right=chr6:35737724-35738033
chr6	CG	SV	35861944	35874763	120	.	.	ID=953;Type=tandem-duplication;Left=chr6:35861944-35862538-;Right=chr6:35874380-35874763-;Distance=12225;DiscordantMatePairAlignments=120;LeftRepeat=;RightRepeat=;LeftGenes=NM_001010886;RightGenes=;XRef=;Frequency=0.76
chr6	CG	SV	35861944	35862538	120	-	.	ID=953;Type=tandem-duplication;Left=chr6:35861944-35862538;Right=chr6:35874380-35874763
chr6	CG	SV	35874380	35874763	120	-	.	ID=953;Type=tandem-duplication;Left=chr6:35861944-35862538;Right=chr6:35874380-35874763
chr6	CG	SV	37959204	37961000	80	.	.	ID=2669;Type=deletion;Left=chr6:37959204-37959585+;Right=chr6:37960556-37961000+;Distance=1352;DiscordantMatePairAlignments=80;LeftRepeat=;RightRepeat=;LeftGenes=NM_021943;RightGenes=NM_021943;XRef=rs66520159 (chr6:37959204-37960556);Frequency=0.30
chr6	CG	SV	37959204	37959585	80	+	.	ID=2669;Type=deletion;Left=chr6:37959204-37959585;Right=chr6:37960556-37961000
chr6	CG	SV	37960556	37961000	80	+	.	ID=2669;Type=deletion;Left=chr6:37959204-37959585;Right=chr6:37960556-37961000
chr6	CG	SV	51307435	51308461	53	.	.	ID=2663;Type=deletion;Left=chr6:51307435-51307735+;Right=chr6:51308085-51308461+;Distance=650;DiscordantMatePairAlignments=53;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr6	CG	SV	51307435	51307735	53	+	.	ID=2663;Type=deletion;Left=chr6:51307435-51307735;Right=chr6:51308085-51308461
chr6	CG	SV	51308085	51308461	53	+	.	ID=2663;Type=deletion;Left=chr6:51307435-51307735;Right=chr6:51308085-51308461
chr6	CG	SV	51847536	51853933	14	.	.	ID=2660;Type=deletion;Left=chr6:51847536-51847864+;Right=chr6:51853574-51853933+;Distance=6038;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_138694;NM_170724;RightGenes=NM_138694;NM_170724;XRef=rs71690319 (chr6:51847527-51853565);Frequency=0.59
chr6	CG	SV	51847536	51847864	14	+	.	ID=2660;Type=deletion;Left=chr6:51847536-51847864;Right=chr6:51853574-51853933
chr6	CG	SV	51853574	51853933	14	+	.	ID=2660;Type=deletion;Left=chr6:51847536-51847864;Right=chr6:51853574-51853933
chr6	CG	SV	55937981	56012023	42	.	.	ID=951;Type=tandem-duplication;Left=chr6:55937981-55938321-;Right=chr6:56011542-56012023-;Distance=73702;DiscordantMatePairAlignments=42;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	55937981	55938321	42	-	.	ID=951;Type=tandem-duplication;Left=chr6:55937981-55938321;Right=chr6:56011542-56012023
chr6	CG	SV	56011542	56012023	42	-	.	ID=951;Type=tandem-duplication;Left=chr6:55937981-55938321;Right=chr6:56011542-56012023
chr6	CG	SV	55939085	56017449	56	.	.	ID=2656;Type=deletion;Left=chr6:55939085-55939444+;Right=chr6:56017032-56017449+;Distance=77947;DiscordantMatePairAlignments=56;LeftRepeat=ERVL-E:LTR:ERVL;RightRepeat=L1ME1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	55939085	55939444	56	+	.	ID=2656;Type=deletion;Left=chr6:55939085-55939444;Right=chr6:56017032-56017449
chr6	CG	SV	56017032	56017449	56	+	.	ID=2656;Type=deletion;Left=chr6:55939085-55939444;Right=chr6:56017032-56017449
chr6	CG	SV	56015608	56021122	33	.	.	ID=2655;Type=complex;Left=chr6:56015608-56016015+;Right=chr6:56020748-56021122+;Distance=5140;DiscordantMatePairAlignments=33;LeftRepeat=MER58A:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	56015608	56016015	33	+	.	ID=2655;Type=complex;Left=chr6:56015608-56016015;Right=chr6:56020748-56021122
chr6	CG	SV	56020748	56021122	33	+	.	ID=2655;Type=complex;Left=chr6:56015608-56016015;Right=chr6:56020748-56021122
chr6	CG	SV	56020380	56026213	33	.	.	ID=950;Type=complex;Left=chr6:56020380-56020748-;Right=chr6:56026059-56026213-;Distance=5465;DiscordantMatePairAlignments=33;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	56020380	56020748	33	-	.	ID=950;Type=complex;Left=chr6:56020380-56020748;Right=chr6:56026059-56026213
chr6	CG	SV	56026059	56026213	33	-	.	ID=950;Type=complex;Left=chr6:56020380-56020748;Right=chr6:56026059-56026213
chr6	CG	SV	57392870	57397724	115	.	.	ID=2653;Type=deletion;Left=chr6:57392870-57393303+;Right=chr6:57397315-57397724+;Distance=4445;DiscordantMatePairAlignments=115;LeftRepeat=;RightRepeat=;LeftGenes=NM_000947;RightGenes=NM_000947;XRef=rs72273072 (chr6:57392872-57397315);Frequency=1.00
chr6	CG	SV	57392870	57393303	115	+	.	ID=2653;Type=deletion;Left=chr6:57392870-57393303;Right=chr6:57397315-57397724
chr6	CG	SV	57397315	57397724	115	+	.	ID=2653;Type=deletion;Left=chr6:57392870-57393303;Right=chr6:57397315-57397724
chr6	CG	SV	57405149	57409690	58	.	.	ID=2652;Type=deletion;Left=chr6:57405149-57405607+;Right=chr6:57409205-57409690+;Distance=4056;DiscordantMatePairAlignments=58;LeftRepeat=;RightRepeat=;LeftGenes=NM_000947;RightGenes=NM_000947;XRef=;Frequency=1.00
chr6	CG	SV	57405149	57405607	58	+	.	ID=2652;Type=deletion;Left=chr6:57405149-57405607;Right=chr6:57409205-57409690
chr6	CG	SV	57409205	57409690	58	+	.	ID=2652;Type=deletion;Left=chr6:57405149-57405607;Right=chr6:57409205-57409690
chr6	CG	SV	57531030	57537567	277	.	.	ID=2651;Type=deletion;Left=chr6:57531030-57531486+;Right=chr6:57537082-57537567+;Distance=6052;DiscordantMatePairAlignments=277;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_000947;RightGenes=NM_000947;XRef=rs68023605 (chr6:57531027-57537079);Frequency=1.00
chr6	CG	SV	57531030	57531486	277	+	.	ID=2651;Type=deletion;Left=chr6:57531030-57531486;Right=chr6:57537082-57537567
chr6	CG	SV	57537082	57537567	277	+	.	ID=2651;Type=deletion;Left=chr6:57531030-57531486;Right=chr6:57537082-57537567
chr6	CG	SV	57586114	57587418	184	.	.	ID=2650;Type=deletion;Left=chr6:57586114-57586692+;Right=chr6:57586821-57587418+;Distance=707;DiscordantMatePairAlignments=184;LeftRepeat=L1ME1:LINE:L1;RightRepeat=L1ME1:LINE:L1;LeftGenes=NM_000947;RightGenes=NM_000947;XRef=rs72194487 (chr6:57586107-57586814);Frequency=1.00
chr6	CG	SV	57586114	57586692	184	+	.	ID=2650;Type=deletion;Left=chr6:57586114-57586692;Right=chr6:57586821-57587418
chr6	CG	SV	57586821	57587418	184	+	.	ID=2650;Type=deletion;Left=chr6:57586114-57586692;Right=chr6:57586821-57587418
chr6	CG	SV	57691648	57698712	32	.	.	ID=2649;Type=deletion;Left=chr6:57691648-57691917+;Right=chr6:57698241-57698712+;Distance=6593;DiscordantMatePairAlignments=32;LeftRepeat=(TTTTTA)n:Simple_repeat:Simple_repeat;RightRepeat=Charlie5:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs66514956 (chr6:57691631-57698224);Frequency=1.00
chr6	CG	SV	57691648	57691917	32	+	.	ID=2649;Type=deletion;Left=chr6:57691648-57691917;Right=chr6:57698241-57698712
chr6	CG	SV	57698241	57698712	32	+	.	ID=2649;Type=deletion;Left=chr6:57691648-57691917;Right=chr6:57698241-57698712
chr6	CG	SV	65966780	65967910	72	.	.	ID=2646;Type=deletion;Left=chr6:65966780-65967455+;Right=chr6:65967386-65967910+;Distance=606;DiscordantMatePairAlignments=72;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_001142800;RightGenes=NM_001142800;XRef=;Frequency=0.00
chr6	CG	SV	65966780	65967455	72	+	.	ID=2646;Type=deletion;Left=chr6:65966780-65967455;Right=chr6:65967386-65967910
chr6	CG	SV	65967386	65967910	72	+	.	ID=2646;Type=deletion;Left=chr6:65966780-65967455;Right=chr6:65967386-65967910
chr6	CG	SV	66316759	66319243	146	.	.	ID=2645;Type=deletion;Left=chr6:66316759-66317222+;Right=chr6:66318753-66319243+;Distance=1994;DiscordantMatePairAlignments=146;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=NM_001142800;NM_001142801;NM_198283;RightGenes=NM_001142800;NM_001142801;NM_198283;XRef=rs67189152 (chr6:66316760-66318754);Frequency=1.00
chr6	CG	SV	66316759	66317222	146	+	.	ID=2645;Type=deletion;Left=chr6:66316759-66317222;Right=chr6:66318753-66319243
chr6	CG	SV	66318753	66319243	146	+	.	ID=2645;Type=deletion;Left=chr6:66316759-66317222;Right=chr6:66318753-66319243
chr6	CG	SV	66651773	66653053	71	.	.	ID=2644;Type=deletion;Left=chr6:66651773-66652201+;Right=chr6:66652567-66653053+;Distance=794;DiscordantMatePairAlignments=71;LeftRepeat=L1PA2:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66529143 (chr6:66651775-66652569);Frequency=0.88
chr6	CG	SV	66651773	66652201	71	+	.	ID=2644;Type=deletion;Left=chr6:66651773-66652201;Right=chr6:66652567-66653053
chr6	CG	SV	66652567	66653053	71	+	.	ID=2644;Type=deletion;Left=chr6:66651773-66652201;Right=chr6:66652567-66653053
chr6	CG	SV	68158254	68169286	55	.	.	ID=2642;Type=deletion;Left=chr6:68158254-68158719+;Right=chr6:68168889-68169286+;Distance=10635;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	68158254	68158719	55	+	.	ID=2642;Type=deletion;Left=chr6:68158254-68158719;Right=chr6:68168889-68169286
chr6	CG	SV	68168889	68169286	55	+	.	ID=2642;Type=deletion;Left=chr6:68158254-68158719;Right=chr6:68168889-68169286
chr6	CG	SV	72723883	72724761	31	.	.	ID=2640;Type=deletion;Left=chr6:72723883-72724240+;Right=chr6:72724351-72724761+;Distance=468;DiscordantMatePairAlignments=31;LeftRepeat=L3:LINE:CR1;RightRepeat=;LeftGenes=NM_014989;RightGenes=NM_014989;XRef=rs67971246 (chr6:72723883-72724351);Frequency=0.00
chr6	CG	SV	72723883	72724240	31	+	.	ID=2640;Type=deletion;Left=chr6:72723883-72724240;Right=chr6:72724351-72724761
chr6	CG	SV	72724351	72724761	31	+	.	ID=2640;Type=deletion;Left=chr6:72723883-72724240;Right=chr6:72724351-72724761
chr6	CG	SV	74107177	74108736	11	.	.	ID=2639;Type=deletion;Left=chr6:74107177-74107568+;Right=chr6:74108556-74108736+;Distance=1379;DiscordantMatePairAlignments=11;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	74107177	74107568	11	+	.	ID=2639;Type=deletion;Left=chr6:74107177-74107568;Right=chr6:74108556-74108736
chr6	CG	SV	74108556	74108736	11	+	.	ID=2639;Type=deletion;Left=chr6:74107177-74107568;Right=chr6:74108556-74108736
chr6	CG	SV	74922168	74923781	88	.	.	ID=2638;Type=deletion;Left=chr6:74922168-74922731+;Right=chr6:74923319-74923781+;Distance=1151;DiscordantMatePairAlignments=88;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66965905 (chr6:74922153-74923304);Frequency=0.94
chr6	CG	SV	74922168	74922731	88	+	.	ID=2638;Type=deletion;Left=chr6:74922168-74922731;Right=chr6:74923319-74923781
chr6	CG	SV	74923319	74923781	88	+	.	ID=2638;Type=deletion;Left=chr6:74922168-74922731;Right=chr6:74923319-74923781
chr6	CG	SV	81682693	81688006	80	.	.	ID=2635;Type=deletion;Left=chr6:81682693-81683062+;Right=chr6:81687388-81688006+;Distance=4695;DiscordantMatePairAlignments=80;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67282975 (chr6:81682701-81687396);Frequency=0.24
chr6	CG	SV	81682693	81683062	80	+	.	ID=2635;Type=deletion;Left=chr6:81682693-81683062;Right=chr6:81687388-81688006
chr6	CG	SV	81687388	81688006	80	+	.	ID=2635;Type=deletion;Left=chr6:81682693-81683062;Right=chr6:81687388-81688006
chr6	CG	SV	83088973	83090478	83	.	.	ID=943;Type=tandem-duplication;Left=chr6:83088973-83089378-;Right=chr6:83090001-83090478-;Distance=1100;DiscordantMatePairAlignments=83;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	83088973	83089378	83	-	.	ID=943;Type=tandem-duplication;Left=chr6:83088973-83089378;Right=chr6:83090001-83090478
chr6	CG	SV	83090001	83090478	83	-	.	ID=943;Type=tandem-duplication;Left=chr6:83088973-83089378;Right=chr6:83090001-83090478
chr6	CG	SV	85374867	85381396	104	.	.	ID=2633;Type=deletion;Left=chr6:85374867-85375367+;Right=chr6:85380944-85381396+;Distance=6077;DiscordantMatePairAlignments=104;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70976689 (chr6:85374870-85380947);Frequency=1.00
chr6	CG	SV	85374867	85375367	104	+	.	ID=2633;Type=deletion;Left=chr6:85374867-85375367;Right=chr6:85380944-85381396
chr6	CG	SV	85380944	85381396	104	+	.	ID=2633;Type=deletion;Left=chr6:85374867-85375367;Right=chr6:85380944-85381396
chr6	CG	SV	87165715	87171034	54	.	.	ID=2631;Type=deletion;Left=chr6:87165715-87166250+;Right=chr6:87170698-87171034+;Distance=4983;DiscordantMatePairAlignments=54;LeftRepeat=MLT-int:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	87165715	87166250	54	+	.	ID=2631;Type=deletion;Left=chr6:87165715-87166250;Right=chr6:87170698-87171034
chr6	CG	SV	87170698	87171034	54	+	.	ID=2631;Type=deletion;Left=chr6:87165715-87166250;Right=chr6:87170698-87171034
chr6	CG	SV	88857863	88859594	41	.	.	ID=2629;Type=deletion;Left=chr6:88857863-88858292+;Right=chr6:88859137-88859594+;Distance=1274;DiscordantMatePairAlignments=41;LeftRepeat=Kanga1:DNA:Tc2;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72527947 (chr6:88857863-88859133);Frequency=0.00
chr6	CG	SV	88857863	88858292	41	+	.	ID=2629;Type=deletion;Left=chr6:88857863-88858292;Right=chr6:88859137-88859594
chr6	CG	SV	88859137	88859594	41	+	.	ID=2629;Type=deletion;Left=chr6:88857863-88858292;Right=chr6:88859137-88859594
chr6	CG	SV	89898738	89904184	76	.	.	ID=2628;Type=deletion;Left=chr6:89898738-89899150+;Right=chr6:89903662-89904184+;Distance=4924;DiscordantMatePairAlignments=76;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	89898738	89899150	76	+	.	ID=2628;Type=deletion;Left=chr6:89898738-89899150;Right=chr6:89903662-89904184
chr6	CG	SV	89903662	89904184	76	+	.	ID=2628;Type=deletion;Left=chr6:89898738-89899150;Right=chr6:89903662-89904184
chr6	CG	SV	89978472	89979500	10	.	.	ID=2627;Type=deletion;Left=chr6:89978472-89978949+;Right=chr6:89978895-89979500+;Distance=423;DiscordantMatePairAlignments=10;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_002042;RightGenes=NM_002042;XRef=rs71763820 (chr6:89978472-89978895);Frequency=0.65
chr6	CG	SV	89978472	89978949	10	+	.	ID=2627;Type=deletion;Left=chr6:89978472-89978949;Right=chr6:89978895-89979500
chr6	CG	SV	89978895	89979500	10	+	.	ID=2627;Type=deletion;Left=chr6:89978472-89978949;Right=chr6:89978895-89979500
chr6	CG	SV	89980347	89980667	48	.	.	ID=3682;Type=probable-inversion;Left=chr6:89980347-89980829+;Right=chr6:89980350-89980667-;Distance=320;DiscordantMatePairAlignments=48;LeftRepeat=L1M3:LINE:L1;RightRepeat=L1MA7:LINE:L1;LeftGenes=NM_002042;RightGenes=NM_002042;XRef=;Frequency=1.00
chr6	CG	SV	89980347	89980829	48	+	.	ID=3682;Type=probable-inversion;Left=chr6:89980347-89980829;Right=chr6:89980350-89980667
chr6	CG	SV	89980350	89980667	48	+	.	ID=3682;Type=probable-inversion;Left=chr6:89980347-89980829;Right=chr6:89980350-89980667
chr6	CG	SV	94797795	94798145	11	.	.	ID=3681;Type=probable-inversion;Left=chr6:94797795-94798133+;Right=chr6:94797865-94798145-;Distance=350;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=L1MA2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr6	CG	SV	94797795	94798133	11	+	.	ID=3681;Type=probable-inversion;Left=chr6:94797795-94798133;Right=chr6:94797865-94798145
chr6	CG	SV	94797865	94798145	11	+	.	ID=3681;Type=probable-inversion;Left=chr6:94797795-94798133;Right=chr6:94797865-94798145
chr6	CG	SV	100141222	100142573	57	.	.	ID=2625;Type=deletion;Left=chr6:100141222-100141676+;Right=chr6:100142042-100142573+;Distance=820;DiscordantMatePairAlignments=57;LeftRepeat=Tigger1:DNA:MER2_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67162792 (chr6:100141227-100142042);Frequency=1.00
chr6	CG	SV	100141222	100141676	57	+	.	ID=2625;Type=deletion;Left=chr6:100141222-100141676;Right=chr6:100142042-100142573
chr6	CG	SV	100142042	100142573	57	+	.	ID=2625;Type=deletion;Left=chr6:100141222-100141676;Right=chr6:100142042-100142573
chr6	CG	SV	101300897	101303517	25	.	.	ID=941;Type=tandem-duplication;Left=chr6:101300897-101301263-;Right=chr6:101303280-101303517-;Distance=2254;DiscordantMatePairAlignments=25;LeftRepeat=;RightRepeat=;LeftGenes=NM_006828;RightGenes=NM_006828;XRef=;Frequency=0.00
chr6	CG	SV	101300897	101301263	25	-	.	ID=941;Type=tandem-duplication;Left=chr6:101300897-101301263;Right=chr6:101303280-101303517
chr6	CG	SV	101303280	101303517	25	-	.	ID=941;Type=tandem-duplication;Left=chr6:101300897-101301263;Right=chr6:101303280-101303517
chr6	CG	SV	103844157	103869901	14	.	.	ID=2623;Type=deletion;Left=chr6:103844157-103844353+;Right=chr6:103869582-103869901+;Distance=25425;DiscordantMatePairAlignments=14;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1PA7:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr6	CG	SV	103844157	103844353	14	+	.	ID=2623;Type=deletion;Left=chr6:103844157-103844353;Right=chr6:103869582-103869901
chr6	CG	SV	103869582	103869901	14	+	.	ID=2623;Type=deletion;Left=chr6:103844157-103844353;Right=chr6:103869582-103869901
chr6	CG	SV	108138035	108139597	59	.	.	ID=2620;Type=deletion;Left=chr6:108138035-108138580+;Right=chr6:108139095-108139597+;Distance=1060;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_198081;RightGenes=NM_198081;XRef=rs66561424 (chr6:108138035-108139079);Frequency=1.00
chr6	CG	SV	108138035	108138580	59	+	.	ID=2620;Type=deletion;Left=chr6:108138035-108138580;Right=chr6:108139095-108139597
chr6	CG	SV	108139095	108139597	59	+	.	ID=2620;Type=deletion;Left=chr6:108138035-108138580;Right=chr6:108139095-108139597
chr6	CG	SV	111177709	111178707	30	.	.	ID=2617;Type=deletion;Left=chr6:111177709-111178229+;Right=chr6:111178262-111178707+;Distance=553;DiscordantMatePairAlignments=30;LeftRepeat=AluSg:SINE:Alu;RightRepeat=;LeftGenes=NM_015076;RightGenes=NM_015076;XRef=rs71778327 (chr6:111177709-111178262);Frequency=0.29
chr6	CG	SV	111177709	111178229	30	+	.	ID=2617;Type=deletion;Left=chr6:111177709-111178229;Right=chr6:111178262-111178707
chr6	CG	SV	111178262	111178707	30	+	.	ID=2617;Type=deletion;Left=chr6:111177709-111178229;Right=chr6:111178262-111178707
chr6	CG	SV	119118016	119120619	50	.	.	ID=939;Type=distal-duplication;Left=chr6:119118016-119118411-;Right=chr6:119120180-119120619-;Distance=2208;DiscordantMatePairAlignments=50;LeftRepeat=MLT1K:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr6	CG	SV	119118016	119118411	50	-	.	ID=939;Type=distal-duplication;Left=chr6:119118016-119118411;Right=chr6:119120180-119120619
chr6	CG	SV	119120180	119120619	50	-	.	ID=939;Type=distal-duplication;Left=chr6:119118016-119118411;Right=chr6:119120180-119120619
chr6	CG	SV	119118981	119121026	45	.	.	ID=2614;Type=distal-duplication;Left=chr6:119118981-119119425+;Right=chr6:119120620-119121026+;Distance=1639;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=Tandem period 20;LeftGenes=;RightGenes=;XRef=rs68095223 (chr6:119118991-119120620);Frequency=0.71
chr6	CG	SV	119118981	119119425	45	+	.	ID=2614;Type=distal-duplication;Left=chr6:119118981-119119425;Right=chr6:119120620-119121026
chr6	CG	SV	119120620	119121026	45	+	.	ID=2614;Type=distal-duplication;Left=chr6:119118981-119119425;Right=chr6:119120620-119121026
chr6	CG	SV	119459218	119459994	11	.	.	ID=2613;Type=deletion;Left=chr6:119459218-119459716+;Right=chr6:119459546-119459994+;Distance=328;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001100411;RightGenes=NM_001100411;XRef=rs6149777 (chr6:119459202-119459530);Frequency=0.82
chr6	CG	SV	119459218	119459716	11	+	.	ID=2613;Type=deletion;Left=chr6:119459218-119459716;Right=chr6:119459546-119459994
chr6	CG	SV	119459546	119459994	11	+	.	ID=2613;Type=deletion;Left=chr6:119459218-119459716;Right=chr6:119459546-119459994
chr6	CG	SV	121589790	121590273	77	+	.	ID=3553;Type=distal-duplication;Left=chr6:121589790-121590273+;Right=chr16:87293944-87294265-;Distance=;DiscordantMatePairAlignments=77;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_152730;RightGenes=NM_178841;XRef=;Frequency=0.00
chr16	CG	SV	87293944	87294265	77	+	.	ID=3553;Type=distal-duplication;Left=chr6:121589790-121590273+;Right=chr16:87293944-87294265-;Distance=;DiscordantMatePairAlignments=77;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_152730;RightGenes=NM_178841;XRef=;Frequency=0.00
chr6	CG	SV	121589233	121589792	70	-	.	ID=191;Type=distal-duplication;Left=chr6:121589233-121589792-;Right=chr16:87293946-87294244+;Distance=;DiscordantMatePairAlignments=70;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_152730;RightGenes=NM_178841;XRef=;Frequency=0.00
chr16	CG	SV	87293946	87294244	70	-	.	ID=191;Type=distal-duplication;Left=chr6:121589233-121589792-;Right=chr16:87293946-87294244+;Distance=;DiscordantMatePairAlignments=70;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_152730;RightGenes=NM_178841;XRef=;Frequency=0.00
chr6	CG	SV	122122062	122125541	13	.	.	ID=2612;Type=deletion;Left=chr6:122122062-122122301+;Right=chr6:122125123-122125541+;Distance=3061;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=L1P3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr6	CG	SV	122122062	122122301	13	+	.	ID=2612;Type=deletion;Left=chr6:122122062-122122301;Right=chr6:122125123-122125541
chr6	CG	SV	122125123	122125541	13	+	.	ID=2612;Type=deletion;Left=chr6:122122062-122122301;Right=chr6:122125123-122125541
chr6	CG	SV	125750464	125753438	30	.	.	ID=2610;Type=deletion;Left=chr6:125750464-125750785+;Right=chr6:125753067-125753438+;Distance=2603;DiscordantMatePairAlignments=30;LeftRepeat=L1MDa:LINE:L1;Tandem period 11;Tandem period 8;RightRepeat=L1MDa:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr6	CG	SV	125750464	125750785	30	+	.	ID=2610;Type=deletion;Left=chr6:125750464-125750785;Right=chr6:125753067-125753438
chr6	CG	SV	125753067	125753438	30	+	.	ID=2610;Type=deletion;Left=chr6:125750464-125750785;Right=chr6:125753067-125753438
chr6	CG	SV	126224790	126229373	39	.	.	ID=2607;Type=deletion;Left=chr6:126224790-126225327+;Right=chr6:126229082-126229373+;Distance=4292;DiscordantMatePairAlignments=39;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSp:SINE:Alu;LeftGenes=NM_001122842;NM_181782;RightGenes=NM_001122842;NM_181782;XRef=rs72460915 (chr6:126224618-126228911);Frequency=0.29
chr6	CG	SV	126224790	126225327	39	+	.	ID=2607;Type=deletion;Left=chr6:126224790-126225327;Right=chr6:126229082-126229373
chr6	CG	SV	126229082	126229373	39	+	.	ID=2607;Type=deletion;Left=chr6:126224790-126225327;Right=chr6:126229082-126229373
chr6	CG	SV	129361215	129367685	113	.	.	ID=2605;Type=deletion;Left=chr6:129361215-129361714+;Right=chr6:129367274-129367685+;Distance=6059;DiscordantMatePairAlignments=113;LeftRepeat=;RightRepeat=;LeftGenes=NM_000426;NM_001079823;RightGenes=NM_000426;NM_001079823;XRef=rs71701877 (chr6:129361208-129367267);Frequency=0.41
chr6	CG	SV	129361215	129361714	113	+	.	ID=2605;Type=deletion;Left=chr6:129361215-129361714;Right=chr6:129367274-129367685
chr6	CG	SV	129367274	129367685	113	+	.	ID=2605;Type=deletion;Left=chr6:129361215-129361714;Right=chr6:129367274-129367685
chr6	CG	SV	129778782	129779327	12	.	.	ID=2604;Type=deletion;Left=chr6:129778782-129779319+;Right=chr6:129779096-129779327+;Distance=314;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_000426;NM_001079823;RightGenes=NM_000426;NM_001079823;XRef=;Frequency=0.71
chr6	CG	SV	129778782	129779319	12	+	.	ID=2604;Type=deletion;Left=chr6:129778782-129779319;Right=chr6:129779096-129779327
chr6	CG	SV	129779096	129779327	12	+	.	ID=2604;Type=deletion;Left=chr6:129778782-129779319;Right=chr6:129779096-129779327
chr6	CG	SV	130157636	130158185	14	.	.	ID=937;Type=tandem-duplication;Left=chr6:130157636-130157913-;Right=chr6:130157936-130158185-;Distance=272;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	130157636	130157913	14	-	.	ID=937;Type=tandem-duplication;Left=chr6:130157636-130157913;Right=chr6:130157936-130158185
chr6	CG	SV	130157936	130158185	14	-	.	ID=937;Type=tandem-duplication;Left=chr6:130157636-130157913;Right=chr6:130157936-130158185
chr6	CG	SV	130889457	130894381	13	.	.	ID=303;Type=complex;Left=chr6:130889457-130889878-;Right=chr6:130893988-130894381+;Distance=4110;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=L1PB:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr6	CG	SV	130889457	130889878	13	-	.	ID=303;Type=complex;Left=chr6:130889457-130889878;Right=chr6:130893988-130894381
chr6	CG	SV	130893988	130894381	13	-	.	ID=303;Type=complex;Left=chr6:130889457-130889878;Right=chr6:130893988-130894381
chr6	CG	SV	130889879	130893987	26	.	.	ID=3677;Type=complex;Left=chr6:130889879-130890323+;Right=chr6:130893746-130893987-;Distance=4108;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=L1PB:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr6	CG	SV	130889879	130890323	26	+	.	ID=3677;Type=complex;Left=chr6:130889879-130890323;Right=chr6:130893746-130893987
chr6	CG	SV	130893746	130893987	26	+	.	ID=3677;Type=complex;Left=chr6:130889879-130890323;Right=chr6:130893746-130893987
chr6	CG	SV	131926360	131927095	22	.	.	ID=302;Type=probable-inversion;Left=chr6:131926360-131926491-;Right=chr6:131926654-131927095+;Distance=163;DiscordantMatePairAlignments=22;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	131926360	131926491	22	-	.	ID=302;Type=probable-inversion;Left=chr6:131926360-131926491;Right=chr6:131926654-131927095
chr6	CG	SV	131926654	131927095	22	-	.	ID=302;Type=probable-inversion;Left=chr6:131926360-131926491;Right=chr6:131926654-131927095
chr6	CG	SV	133383527	133390019	79	.	.	ID=2601;Type=deletion;Left=chr6:133383527-133384014+;Right=chr6:133389596-133390019+;Distance=6069;DiscordantMatePairAlignments=79;LeftRepeat=L1ME3B:LINE:L1;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70979714 (chr6:133383513-133389578);Frequency=0.82
chr6	CG	SV	133383527	133384014	79	+	.	ID=2601;Type=deletion;Left=chr6:133383527-133384014;Right=chr6:133389596-133390019
chr6	CG	SV	133389596	133390019	79	+	.	ID=2601;Type=deletion;Left=chr6:133383527-133384014;Right=chr6:133389596-133390019
chr6	CG	SV	134631461	134636577	12	.	.	ID=2599;Type=deletion;Left=chr6:134631461-134631963+;Right=chr6:134636329-134636577+;Distance=4868;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluYa5:SINE:Alu;LeftGenes=NM_001143676;RightGenes=NM_001143676;XRef=;Frequency=0.12
chr6	CG	SV	134631461	134631963	12	+	.	ID=2599;Type=deletion;Left=chr6:134631461-134631963;Right=chr6:134636329-134636577
chr6	CG	SV	134636329	134636577	12	+	.	ID=2599;Type=deletion;Left=chr6:134631461-134631963;Right=chr6:134636329-134636577
chr6	CG	SV	134645431	134646412	14	.	.	ID=2598;Type=deletion;Left=chr6:134645431-134646077+;Right=chr6:134646269-134646412+;Distance=838;DiscordantMatePairAlignments=14;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001143676;RightGenes=NM_001143676;XRef=;Frequency=0.00
chr6	CG	SV	134645431	134646077	14	+	.	ID=2598;Type=deletion;Left=chr6:134645431-134646077;Right=chr6:134646269-134646412
chr6	CG	SV	134646269	134646412	14	+	.	ID=2598;Type=deletion;Left=chr6:134645431-134646077;Right=chr6:134646269-134646412
chr6	CG	SV	136893369	136895122	74	.	.	ID=2591;Type=deletion;Left=chr6:136893369-136893836+;Right=chr6:136894617-136895122+;Distance=1248;DiscordantMatePairAlignments=74;LeftRepeat=;RightRepeat=;LeftGenes=NM_003980;RightGenes=NM_003980;XRef=rs71797178 (chr6:136893368-136894616);Frequency=0.15
chr6	CG	SV	136893369	136893836	74	+	.	ID=2591;Type=deletion;Left=chr6:136893369-136893836;Right=chr6:136894617-136895122
chr6	CG	SV	136894617	136895122	74	+	.	ID=2591;Type=deletion;Left=chr6:136893369-136893836;Right=chr6:136894617-136895122
chr6	CG	SV	137355387	137356313	16	.	.	ID=2590;Type=deletion;Left=chr6:137355387-137355927+;Right=chr6:137355880-137356313+;Distance=493;DiscordantMatePairAlignments=16;LeftRepeat=L1MC:LINE:L1;RightRepeat=;LeftGenes=NR_027994;RightGenes=NR_027994;XRef=rs67777601 (chr6:137355386-137355879);Frequency=1.00
chr6	CG	SV	137355387	137355927	16	+	.	ID=2590;Type=deletion;Left=chr6:137355387-137355927;Right=chr6:137355880-137356313
chr6	CG	SV	137355880	137356313	16	+	.	ID=2590;Type=deletion;Left=chr6:137355387-137355927;Right=chr6:137355880-137356313
chr6	CG	SV	138318451	140310946	20	.	.	ID=301;Type=distal-duplication;Left=chr6:138318451-138318552-;Right=chr6:140310414-140310946+;Distance=1991862;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr6	CG	SV	138318451	138318552	20	-	.	ID=301;Type=distal-duplication;Left=chr6:138318451-138318552;Right=chr6:140310414-140310946
chr6	CG	SV	140310414	140310946	20	-	.	ID=301;Type=distal-duplication;Left=chr6:138318451-138318552;Right=chr6:140310414-140310946
chr6	CG	SV	138318899	140310189	10	.	.	ID=3675;Type=distal-duplication;Left=chr6:138318899-138319250+;Right=chr6:140309983-140310189-;Distance=1991290;DiscordantMatePairAlignments=10;LeftRepeat=L1M5:LINE:L1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr6	CG	SV	138318899	138319250	10	+	.	ID=3675;Type=distal-duplication;Left=chr6:138318899-138319250;Right=chr6:140309983-140310189
chr6	CG	SV	140309983	140310189	10	+	.	ID=3675;Type=distal-duplication;Left=chr6:138318899-138319250;Right=chr6:140309983-140310189
chr6	CG	SV	141419388	141422379	63	.	.	ID=2587;Type=deletion;Left=chr6:141419388-141419727+;Right=chr6:141421897-141422379+;Distance=2509;DiscordantMatePairAlignments=63;LeftRepeat=L1MC5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr6	CG	SV	141419388	141419727	63	+	.	ID=2587;Type=deletion;Left=chr6:141419388-141419727;Right=chr6:141421897-141422379
chr6	CG	SV	141421897	141422379	63	+	.	ID=2587;Type=deletion;Left=chr6:141419388-141419727;Right=chr6:141421897-141422379
chr6	CG	SV	142085020	142092898	27	.	.	ID=2586;Type=deletion;Left=chr6:142085020-142085397+;Right=chr6:142092431-142092898+;Distance=7411;DiscordantMatePairAlignments=27;LeftRepeat=HERVL40:LTR:ERVL;RightRepeat=AluSp:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	142085020	142085397	27	+	.	ID=2586;Type=deletion;Left=chr6:142085020-142085397;Right=chr6:142092431-142092898
chr6	CG	SV	142092431	142092898	27	+	.	ID=2586;Type=deletion;Left=chr6:142085020-142085397;Right=chr6:142092431-142092898
chr6	CG	SV	145128531	145129377	10	.	.	ID=2585;Type=deletion;Left=chr6:145128531-145129010+;Right=chr6:145128910-145129377+;Distance=379;DiscordantMatePairAlignments=10;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_007124;RightGenes=NM_007124;XRef=;Frequency=0.00
chr6	CG	SV	145128531	145129010	10	+	.	ID=2585;Type=deletion;Left=chr6:145128531-145129010;Right=chr6:145128910-145129377
chr6	CG	SV	145128910	145129377	10	+	.	ID=2585;Type=deletion;Left=chr6:145128531-145129010;Right=chr6:145128910-145129377
chr6	CG	SV	145747164	145748645	67	.	.	ID=2584;Type=deletion;Left=chr6:145747164-145747540+;Right=chr6:145748218-145748645+;Distance=1054;DiscordantMatePairAlignments=67;LeftRepeat=LTR16A:LTR:ERVL;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=rs70979780 (chr6:145747164-145748218);Frequency=0.24
chr6	CG	SV	145747164	145747540	67	+	.	ID=2584;Type=deletion;Left=chr6:145747164-145747540;Right=chr6:145748218-145748645
chr6	CG	SV	145748218	145748645	67	+	.	ID=2584;Type=deletion;Left=chr6:145747164-145747540;Right=chr6:145748218-145748645
chr6	CG	SV	149989393	149991349	16	.	.	ID=2583;Type=deletion;Left=chr6:149989393-149989948+;Right=chr6:149991223-149991349+;Distance=1830;DiscordantMatePairAlignments=16;LeftRepeat=AluYd8:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_007044;RightGenes=NM_007044;XRef=rs71712772 (chr6:149989129-149990936);Frequency=0.00
chr6	CG	SV	149989393	149989948	16	+	.	ID=2583;Type=deletion;Left=chr6:149989393-149989948;Right=chr6:149991223-149991349
chr6	CG	SV	149991223	149991349	16	+	.	ID=2583;Type=deletion;Left=chr6:149989393-149989948;Right=chr6:149991223-149991349
chr6	CG	SV	152431687	152434388	48	.	.	ID=2582;Type=deletion;Left=chr6:152431687-152432169+;Right=chr6:152433931-152434388+;Distance=2244;DiscordantMatePairAlignments=48;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_000125;NM_001122740;NM_001122741;NM_001122742;RightGenes=NM_000125;NM_001122740;NM_001122741;NM_001122742;XRef=rs67324533 (chr6:152431687-152433931);Frequency=0.12
chr6	CG	SV	152431687	152432169	48	+	.	ID=2582;Type=deletion;Left=chr6:152431687-152432169;Right=chr6:152433931-152434388
chr6	CG	SV	152433931	152434388	48	+	.	ID=2582;Type=deletion;Left=chr6:152431687-152432169;Right=chr6:152433931-152434388
chr6	CG	SV	153071683	153075920	48	.	.	ID=2581;Type=deletion;Left=chr6:153071683-153071984+;Right=chr6:153075501-153075920+;Distance=3818;DiscordantMatePairAlignments=48;LeftRepeat=L1MEb:LINE:L1;RightRepeat=L1MEb:LINE:L1;LeftGenes=NM_025107;RightGenes=NM_025107;XRef=;Frequency=1.00
chr6	CG	SV	153071683	153071984	48	+	.	ID=2581;Type=deletion;Left=chr6:153071683-153071984;Right=chr6:153075501-153075920
chr6	CG	SV	153075501	153075920	48	+	.	ID=2581;Type=deletion;Left=chr6:153071683-153071984;Right=chr6:153075501-153075920
chr6	CG	SV	153790942	161126928	11	.	.	ID=3672;Type=probable-inversion;Left=chr6:153790942-153791381+;Right=chr6:161126811-161126928-;Distance=7335986;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr6	CG	SV	153790942	153791381	11	+	.	ID=3672;Type=probable-inversion;Left=chr6:153790942-153791381;Right=chr6:161126811-161126928
chr6	CG	SV	161126811	161126928	11	+	.	ID=3672;Type=probable-inversion;Left=chr6:153790942-153791381;Right=chr6:161126811-161126928
chr6	CG	SV	155959864	155961926	47	.	.	ID=2578;Type=deletion;Left=chr6:155959864-155960189+;Right=chr6:155961357-155961926+;Distance=1493;DiscordantMatePairAlignments=47;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72311671 (chr6:155959866-155961357);Frequency=0.00
chr6	CG	SV	155959864	155960189	47	+	.	ID=2578;Type=deletion;Left=chr6:155959864-155960189;Right=chr6:155961357-155961926
chr6	CG	SV	155961357	155961926	47	+	.	ID=2578;Type=deletion;Left=chr6:155959864-155960189;Right=chr6:155961357-155961926
chr6	CG	SV	158468270	158469606	110	.	.	ID=2576;Type=deletion;Left=chr6:158468270-158468830+;Right=chr6:158469070-158469606+;Distance=800;DiscordantMatePairAlignments=110;LeftRepeat=;RightRepeat=;LeftGenes=NM_032861;RightGenes=NM_032861;XRef=rs68179956 (chr6:158468270-158469070);Frequency=1.00
chr6	CG	SV	158468270	158468830	110	+	.	ID=2576;Type=deletion;Left=chr6:158468270-158468830;Right=chr6:158469070-158469606
chr6	CG	SV	158469070	158469606	110	+	.	ID=2576;Type=deletion;Left=chr6:158468270-158468830;Right=chr6:158469070-158469606
chr6	CG	SV	159046050	159046794	17	.	.	ID=2574;Type=deletion;Left=chr6:159046050-159046587+;Right=chr6:159046507-159046794+;Distance=457;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;Tandem period 51;LeftGenes=NM_001009991;RightGenes=NM_001009991;XRef=;Frequency=0.24
chr6	CG	SV	159046050	159046587	17	+	.	ID=2574;Type=deletion;Left=chr6:159046050-159046587;Right=chr6:159046507-159046794
chr6	CG	SV	159046507	159046794	17	+	.	ID=2574;Type=deletion;Left=chr6:159046050-159046587;Right=chr6:159046507-159046794
chr6	CG	SV	165644659	165652631	21	.	.	ID=2570;Type=deletion;Left=chr6:165644659-165645053+;Right=chr6:165652125-165652631+;Distance=7466;DiscordantMatePairAlignments=21;LeftRepeat=LTR46:LTR:ERV1;RightRepeat=L1PA8:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72196192 (chr6:165644656-165652122);Frequency=0.88
chr6	CG	SV	165644659	165645053	21	+	.	ID=2570;Type=deletion;Left=chr6:165644659-165645053;Right=chr6:165652125-165652631
chr6	CG	SV	165652125	165652631	21	+	.	ID=2570;Type=deletion;Left=chr6:165644659-165645053;Right=chr6:165652125-165652631
chr6	CG	SV	166417630	166423018	89	.	.	ID=2569;Type=deletion;Left=chr6:166417630-166417963+;Right=chr6:166422579-166423018+;Distance=4949;DiscordantMatePairAlignments=89;LeftRepeat=L1MA5A:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67471797 (chr6:166417630-166422579);Frequency=0.00
chr6	CG	SV	166417630	166417963	89	+	.	ID=2569;Type=deletion;Left=chr6:166417630-166417963;Right=chr6:166422579-166423018
chr6	CG	SV	166422579	166423018	89	+	.	ID=2569;Type=deletion;Left=chr6:166417630-166417963;Right=chr6:166422579-166423018
chr6	CG	SV	166918972	166920694	103	.	.	ID=2568;Type=deletion;Left=chr6:166918972-166919393+;Right=chr6:166920162-166920694+;Distance=1190;DiscordantMatePairAlignments=103;LeftRepeat=;RightRepeat=;LeftGenes=NM_001006932;NM_021135;RightGenes=NM_001006932;NM_021135;XRef=rs67363628 (chr6:166918980-166920170);Frequency=0.10
chr6	CG	SV	166918972	166919393	103	+	.	ID=2568;Type=deletion;Left=chr6:166918972-166919393;Right=chr6:166920162-166920694
chr6	CG	SV	166920162	166920694	103	+	.	ID=2568;Type=deletion;Left=chr6:166918972-166919393;Right=chr6:166920162-166920694
chr6	CG	SV	167408060	167410014	50	.	.	ID=2567;Type=deletion;Left=chr6:167408060-167408406+;Right=chr6:167409596-167410014+;Distance=1536;DiscordantMatePairAlignments=50;LeftRepeat=L1MEe:LINE:L1;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem CTTC;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	167408060	167408406	50	+	.	ID=2567;Type=deletion;Left=chr6:167408060-167408406;Right=chr6:167409596-167410014
chr6	CG	SV	167409596	167410014	50	+	.	ID=2567;Type=deletion;Left=chr6:167408060-167408406;Right=chr6:167409596-167410014
chr6	CG	SV	169056235	169056416	14	.	.	ID=931;Type=tandem-duplication;Left=chr6:169056235-169056342-;Right=chr6:169056325-169056416-;Distance=74;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	169056235	169056342	14	-	.	ID=931;Type=tandem-duplication;Left=chr6:169056235-169056342;Right=chr6:169056325-169056416
chr6	CG	SV	169056325	169056416	14	-	.	ID=931;Type=tandem-duplication;Left=chr6:169056235-169056342;Right=chr6:169056325-169056416
chr6	CG	SV	169970933	169971845	13	.	.	ID=2566;Type=deletion;Left=chr6:169970933-169971315+;Right=chr6:169971381-169971845+;Distance=448;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 32;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67981709 (chr6:169970872-169971288);Frequency=0.35
chr6	CG	SV	169970933	169971315	13	+	.	ID=2566;Type=deletion;Left=chr6:169970933-169971315;Right=chr6:169971381-169971845
chr6	CG	SV	169971381	169971845	13	+	.	ID=2566;Type=deletion;Left=chr6:169970933-169971315;Right=chr6:169971381-169971845
chr6	CG	SV	170417861	170419171	155	.	.	ID=2565;Type=deletion;Left=chr6:170417861-170418449+;Right=chr6:170418745-170419171+;Distance=884;DiscordantMatePairAlignments=155;LeftRepeat=Self chain;Tandem period 68;RightRepeat=Self chain;Tandem period 68;LeftGenes=;RightGenes=;XRef=rs72415082 (chr6:170417753-170418636);Frequency=0.41
chr6	CG	SV	170417861	170418449	155	+	.	ID=2565;Type=deletion;Left=chr6:170417861-170418449;Right=chr6:170418745-170419171
chr6	CG	SV	170418745	170419171	155	+	.	ID=2565;Type=deletion;Left=chr6:170417861-170418449;Right=chr6:170418745-170419171
chr7	CG	SV	198133	199384	14	.	.	ID=2564;Type=deletion;Left=chr7:198133-198442+;Right=chr7:199211-199384+;Distance=1078;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 29;RightRepeat=L1MB7:LINE:L1;Self chain;Tandem period 29;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	198133	198442	14	+	.	ID=2564;Type=deletion;Left=chr7:198133-198442;Right=chr7:199211-199384
chr7	CG	SV	199211	199384	14	+	.	ID=2564;Type=deletion;Left=chr7:198133-198442;Right=chr7:199211-199384
chr7	CG	SV	1151596	1154583	41	.	.	ID=2562;Type=deletion;Left=chr7:1151596-1152021+;Right=chr7:1154186-1154583+;Distance=2590;DiscordantMatePairAlignments=41;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71703948 (chr7:1151590-1154180);Frequency=0.94
chr7	CG	SV	1151596	1152021	41	+	.	ID=2562;Type=deletion;Left=chr7:1151596-1152021;Right=chr7:1154186-1154583
chr7	CG	SV	1154186	1154583	41	+	.	ID=2562;Type=deletion;Left=chr7:1151596-1152021;Right=chr7:1154186-1154583
chr7	CG	SV	1300878	1301932	14	.	.	ID=2561;Type=deletion;Left=chr7:1300878-1301111+;Right=chr7:1301734-1301932+;Distance=856;DiscordantMatePairAlignments=14;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	1300878	1301111	14	+	.	ID=2561;Type=deletion;Left=chr7:1300878-1301111;Right=chr7:1301734-1301932
chr7	CG	SV	1301734	1301932	14	+	.	ID=2561;Type=deletion;Left=chr7:1300878-1301111;Right=chr7:1301734-1301932
chr7	CG	SV	2697272	2698111	14	.	.	ID=2560;Type=deletion;Left=chr7:2697272-2697672+;Right=chr7:2697859-2698111+;Distance=587;DiscordantMatePairAlignments=14;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_133463;RightGenes=NM_133463;XRef=;Frequency=0.00
chr7	CG	SV	2697272	2697672	14	+	.	ID=2560;Type=deletion;Left=chr7:2697272-2697672;Right=chr7:2697859-2698111
chr7	CG	SV	2697859	2698111	14	+	.	ID=2560;Type=deletion;Left=chr7:2697272-2697672;Right=chr7:2697859-2698111
chr7	CG	SV	5077846	5078679	14	.	.	ID=2558;Type=deletion;Left=chr7:5077846-5078339+;Right=chr7:5078312-5078679+;Distance=466;DiscordantMatePairAlignments=14;LeftRepeat=L1MEc:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NR_015343;XRef=;Frequency=0.00
chr7	CG	SV	5077846	5078339	14	+	.	ID=2558;Type=deletion;Left=chr7:5077846-5078339;Right=chr7:5078312-5078679
chr7	CG	SV	5078312	5078679	14	+	.	ID=2558;Type=deletion;Left=chr7:5077846-5078339;Right=chr7:5078312-5078679
chr7	CG	SV	9601175	9602854	17	.	.	ID=2556;Type=deletion;Left=chr7:9601175-9601533+;Right=chr7:9602518-9602854+;Distance=1343;DiscordantMatePairAlignments=17;LeftRepeat=THE1D-int:LTR:MaLR;RightRepeat=THE1D-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs71014005 (chr7:9601175-9602518);Frequency=1.00
chr7	CG	SV	9601175	9601533	17	+	.	ID=2556;Type=deletion;Left=chr7:9601175-9601533;Right=chr7:9602518-9602854
chr7	CG	SV	9602518	9602854	17	+	.	ID=2556;Type=deletion;Left=chr7:9601175-9601533;Right=chr7:9602518-9602854
chr7	CG	SV	10470841	10473029	34	.	.	ID=2555;Type=deletion;Left=chr7:10470841-10471362+;Right=chr7:10472675-10473029+;Distance=1834;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;Tandem T;RightRepeat=MSTA:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr7	CG	SV	10470841	10471362	34	+	.	ID=2555;Type=deletion;Left=chr7:10470841-10471362;Right=chr7:10472675-10473029
chr7	CG	SV	10472675	10473029	34	+	.	ID=2555;Type=deletion;Left=chr7:10470841-10471362;Right=chr7:10472675-10473029
chr7	CG	SV	14217537	14219039	84	.	.	ID=2554;Type=deletion;Left=chr7:14217537-14218116+;Right=chr7:14218588-14219039+;Distance=1051;DiscordantMatePairAlignments=84;LeftRepeat=Self chain;Tandem period 21;Tandem period 43;RightRepeat=L2:LINE:L2;Self chain;Tandem period 21;Tandem period 43;LeftGenes=NM_004080;NM_145695;RightGenes=NM_004080;NM_145695;XRef=;Frequency=0.41
chr7	CG	SV	14217537	14218116	84	+	.	ID=2554;Type=deletion;Left=chr7:14217537-14218116;Right=chr7:14218588-14219039
chr7	CG	SV	14218588	14219039	84	+	.	ID=2554;Type=deletion;Left=chr7:14217537-14218116;Right=chr7:14218588-14219039
chr7	CG	SV	22401328	22403826	93	.	.	ID=2553;Type=deletion;Left=chr7:22401328-22401891+;Right=chr7:22403288-22403826+;Distance=1960;DiscordantMatePairAlignments=93;LeftRepeat=LOR1a:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71839705 (chr7:22401325-22403285);Frequency=0.71
chr7	CG	SV	22401328	22401891	93	+	.	ID=2553;Type=deletion;Left=chr7:22401328-22401891;Right=chr7:22403288-22403826
chr7	CG	SV	22403288	22403826	93	+	.	ID=2553;Type=deletion;Left=chr7:22401328-22401891;Right=chr7:22403288-22403826
chr7	CG	SV	23684743	23685770	18	.	.	ID=2552;Type=deletion;Left=chr7:23684743-23685032+;Right=chr7:23685420-23685770+;Distance=677;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	23684743	23685032	18	+	.	ID=2552;Type=deletion;Left=chr7:23684743-23685032;Right=chr7:23685420-23685770
chr7	CG	SV	23685420	23685770	18	+	.	ID=2552;Type=deletion;Left=chr7:23684743-23685032;Right=chr7:23685420-23685770
chr7	CG	SV	24004690	24007064	93	.	.	ID=2551;Type=deletion;Left=chr7:24004690-24004984+;Right=chr7:24006599-24007064+;Distance=1909;DiscordantMatePairAlignments=93;LeftRepeat=;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66575194 (chr7:24004690-24006599);Frequency=0.94
chr7	CG	SV	24004690	24004984	93	+	.	ID=2551;Type=deletion;Left=chr7:24004690-24004984;Right=chr7:24006599-24007064
chr7	CG	SV	24006599	24007064	93	+	.	ID=2551;Type=deletion;Left=chr7:24004690-24004984;Right=chr7:24006599-24007064
chr7	CG	SV	24034612	24035045	14	.	.	ID=926;Type=tandem-duplication;Left=chr7:24034612-24034839-;Right=chr7:24034816-24035045-;Distance=206;DiscordantMatePairAlignments=14;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr7	CG	SV	24034612	24034839	14	-	.	ID=926;Type=tandem-duplication;Left=chr7:24034612-24034839;Right=chr7:24034816-24035045
chr7	CG	SV	24034816	24035045	14	-	.	ID=926;Type=tandem-duplication;Left=chr7:24034612-24034839;Right=chr7:24034816-24035045
chr7	CG	SV	26103602	26112559	25	.	.	ID=2548;Type=deletion;Left=chr7:26103602-26103894+;Right=chr7:26112098-26112559+;Distance=8496;DiscordantMatePairAlignments=25;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr7	CG	SV	26103602	26103894	25	+	.	ID=2548;Type=deletion;Left=chr7:26103602-26103894;Right=chr7:26112098-26112559
chr7	CG	SV	26112098	26112559	25	+	.	ID=2548;Type=deletion;Left=chr7:26103602-26103894;Right=chr7:26112098-26112559
chr7	CG	SV	31490304	31492030	12	.	.	ID=2542;Type=deletion;Left=chr7:31490304-31490681+;Right=chr7:31491791-31492030+;Distance=1487;DiscordantMatePairAlignments=12;LeftRepeat=L1HS:LINE:L1;Self chain;Tandem T;RightRepeat=L1PB1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71014016 (chr7:31490304-31491792);Frequency=0.59
chr7	CG	SV	31490304	31490681	12	+	.	ID=2542;Type=deletion;Left=chr7:31490304-31490681;Right=chr7:31491791-31492030
chr7	CG	SV	31491791	31492030	12	+	.	ID=2542;Type=deletion;Left=chr7:31490304-31490681;Right=chr7:31491791-31492030
chr7	CG	SV	32356690	32360017	66	.	.	ID=2541;Type=deletion;Left=chr7:32356690-32357091+;Right=chr7:32359651-32360017+;Distance=2961;DiscordantMatePairAlignments=66;LeftRepeat=(TA)n:Simple_repeat:Simple_repeat;Self chain;Tandem AT;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71014019 (chr7:32356690-32359651);Frequency=0.94
chr7	CG	SV	32356690	32357091	66	+	.	ID=2541;Type=deletion;Left=chr7:32356690-32357091;Right=chr7:32359651-32360017
chr7	CG	SV	32359651	32360017	66	+	.	ID=2541;Type=deletion;Left=chr7:32356690-32357091;Right=chr7:32359651-32360017
chr7	CG	SV	33865381	33866088	10	.	.	ID=2540;Type=deletion;Left=chr7:33865381-33865880+;Right=chr7:33865712-33866088+;Distance=331;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66914971 (chr7:33865366-33865697);Frequency=1.00
chr7	CG	SV	33865381	33865880	10	+	.	ID=2540;Type=deletion;Left=chr7:33865381-33865880;Right=chr7:33865712-33866088
chr7	CG	SV	33865712	33866088	10	+	.	ID=2540;Type=deletion;Left=chr7:33865381-33865880;Right=chr7:33865712-33866088
chr7	CG	SV	36407746	36408812	33	.	.	ID=2539;Type=deletion;Left=chr7:36407746-36408264+;Right=chr7:36408520-36408812+;Distance=774;DiscordantMatePairAlignments=33;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_018685;RightGenes=NM_018685;XRef=;Frequency=0.82
chr7	CG	SV	36407746	36408264	33	+	.	ID=2539;Type=deletion;Left=chr7:36407746-36408264;Right=chr7:36408520-36408812
chr7	CG	SV	36408520	36408812	33	+	.	ID=2539;Type=deletion;Left=chr7:36407746-36408264;Right=chr7:36408520-36408812
chr7	CG	SV	40845900	40846995	26	.	.	ID=3667;Type=complex;Left=chr7:40845900-40846265+;Right=chr7:40846603-40846995-;Distance=1095;DiscordantMatePairAlignments=26;LeftRepeat=L1MD2:LINE:L1;RightRepeat=;LeftGenes=NM_024728;RightGenes=NM_024728;XRef=;Frequency=0.71
chr7	CG	SV	40845900	40846265	26	+	.	ID=3667;Type=complex;Left=chr7:40845900-40846265;Right=chr7:40846603-40846995
chr7	CG	SV	40846603	40846995	26	+	.	ID=3667;Type=complex;Left=chr7:40845900-40846265;Right=chr7:40846603-40846995
chr7	CG	SV	40845469	40847439	76	.	.	ID=297;Type=complex;Left=chr7:40845469-40845900-;Right=chr7:40846994-40847439+;Distance=1094;DiscordantMatePairAlignments=76;LeftRepeat=L1MD2:LINE:L1;RightRepeat=;LeftGenes=NM_024728;RightGenes=NM_024728;XRef=;Frequency=0.71
chr7	CG	SV	40845469	40845900	76	-	.	ID=297;Type=complex;Left=chr7:40845469-40845900;Right=chr7:40846994-40847439
chr7	CG	SV	40846994	40847439	76	-	.	ID=297;Type=complex;Left=chr7:40845469-40845900;Right=chr7:40846994-40847439
chr7	CG	SV	40921629	40922118	12	.	.	ID=925;Type=tandem-duplication;Left=chr7:40921629-40921875-;Right=chr7:40921898-40922118-;Distance=243;DiscordantMatePairAlignments=12;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.30
chr7	CG	SV	40921629	40921875	12	-	.	ID=925;Type=tandem-duplication;Left=chr7:40921629-40921875;Right=chr7:40921898-40922118
chr7	CG	SV	40921898	40922118	12	-	.	ID=925;Type=tandem-duplication;Left=chr7:40921629-40921875;Right=chr7:40921898-40922118
chr7	CG	SV	55102448	55103801	88	.	.	ID=2531;Type=deletion;Left=chr7:55102448-55102966+;Right=chr7:55103354-55103801+;Distance=906;DiscordantMatePairAlignments=88;LeftRepeat=;RightRepeat=;LeftGenes=NM_005228;NM_201282;NM_201283;NM_201284;RightGenes=NM_005228;NM_201282;NM_201283;NM_201284;XRef=;Frequency=0.00
chr7	CG	SV	55102448	55102966	88	+	.	ID=2531;Type=deletion;Left=chr7:55102448-55102966;Right=chr7:55103354-55103801
chr7	CG	SV	55103354	55103801	88	+	.	ID=2531;Type=deletion;Left=chr7:55102448-55102966;Right=chr7:55103354-55103801
chr7	CG	SV	55254252	55256995	42	.	.	ID=2530;Type=deletion;Left=chr7:55254252-55254834+;Right=chr7:55256570-55256995+;Distance=2318;DiscordantMatePairAlignments=42;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71805120 (chr7:55254237-55256555);Frequency=0.82
chr7	CG	SV	55254252	55254834	42	+	.	ID=2530;Type=deletion;Left=chr7:55254252-55254834;Right=chr7:55256570-55256995
chr7	CG	SV	55256570	55256995	42	+	.	ID=2530;Type=deletion;Left=chr7:55254252-55254834;Right=chr7:55256570-55256995
chr7	CG	SV	55889178	55890203	18	.	.	ID=923;Type=tandem-duplication;Left=chr7:55889178-55889624-;Right=chr7:55890011-55890203-;Distance=579;DiscordantMatePairAlignments=18;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_207366;RightGenes=NM_207366;XRef=;Frequency=0.18
chr7	CG	SV	55889178	55889624	18	-	.	ID=923;Type=tandem-duplication;Left=chr7:55889178-55889624;Right=chr7:55890011-55890203
chr7	CG	SV	55890011	55890203	18	-	.	ID=923;Type=tandem-duplication;Left=chr7:55889178-55889624;Right=chr7:55890011-55890203
chr7	CG	SV	63723982	63724260	14	+	.	ID=3656;Type=interchromosomal;Left=chr7:63723982-63724260+;Right=chr12:127916304-127916582-;Distance=;DiscordantMatePairAlignments=14;LeftRepeat=LTR9:LTR:ERV1;Self chain;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=NM_144669;XRef=;Frequency=0.00
chr12	CG	SV	127916304	127916582	14	+	.	ID=3656;Type=interchromosomal;Left=chr7:63723982-63724260+;Right=chr12:127916304-127916582-;Distance=;DiscordantMatePairAlignments=14;LeftRepeat=LTR9:LTR:ERV1;Self chain;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=NM_144669;XRef=;Frequency=0.00
chr7	CG	SV	63953259	63955875	34	.	.	ID=2525;Type=deletion;Left=chr7:63953259-63953705+;Right=chr7:63955510-63955875+;Distance=2251;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71014041 (chr7:63953259-63955510);Frequency=1.00
chr7	CG	SV	63953259	63953705	34	+	.	ID=2525;Type=deletion;Left=chr7:63953259-63953705;Right=chr7:63955510-63955875
chr7	CG	SV	63955510	63955875	34	+	.	ID=2525;Type=deletion;Left=chr7:63953259-63953705;Right=chr7:63955510-63955875
chr7	CG	SV	64899668	64900237	10	.	.	ID=917;Type=tandem-duplication;Left=chr7:64899668-64899902-;Right=chr7:64899927-64900237-;Distance=335;DiscordantMatePairAlignments=10;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSq:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr7	CG	SV	64899668	64899902	10	-	.	ID=917;Type=tandem-duplication;Left=chr7:64899668-64899902;Right=chr7:64899927-64900237
chr7	CG	SV	64899927	64900237	10	-	.	ID=917;Type=tandem-duplication;Left=chr7:64899668-64899902;Right=chr7:64899927-64900237
chr7	CG	SV	65831343	73020184	11	.	.	ID=2519;Type=deletion;Left=chr7:65831343-65831548+;Right=chr7:73020073-73020184+;Distance=7188730;DiscordantMatePairAlignments=11;LeftRepeat=C-rich:Low_complexity:Low_complexity;SegDup;Self chain;Tandem period 12;Tandem period 36;RightRepeat=C-rich:Low_complexity:Low_complexity;SegDup;Self chain;Tandem period 12;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	65831343	65831548	11	+	.	ID=2519;Type=deletion;Left=chr7:65831343-65831548;Right=chr7:73020073-73020184
chr7	CG	SV	73020073	73020184	11	+	.	ID=2519;Type=deletion;Left=chr7:65831343-65831548;Right=chr7:73020073-73020184
chr7	CG	SV	67273208	97920775	25	.	.	ID=3666;Type=probable-inversion;Left=chr7:67273208-67273534+;Right=chr7:97920487-97920775-;Distance=30647567;DiscordantMatePairAlignments=25;LeftRepeat=MER5A:DNA:MER1_type;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	67273208	67273534	25	+	.	ID=3666;Type=probable-inversion;Left=chr7:67273208-67273534;Right=chr7:97920487-97920775
chr7	CG	SV	97920487	97920775	25	+	.	ID=3666;Type=probable-inversion;Left=chr7:67273208-67273534;Right=chr7:97920487-97920775
chr7	CG	SV	70629217	70629585	13	.	.	ID=915;Type=tandem-duplication;Left=chr7:70629217-70629323-;Right=chr7:70629314-70629585-;Distance=262;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_022479;RightGenes=NM_022479;XRef=;Frequency=0.00
chr7	CG	SV	70629217	70629323	13	-	.	ID=915;Type=tandem-duplication;Left=chr7:70629217-70629323;Right=chr7:70629314-70629585
chr7	CG	SV	70629314	70629585	13	-	.	ID=915;Type=tandem-duplication;Left=chr7:70629217-70629323;Right=chr7:70629314-70629585
chr7	CG	SV	70849837	70851292	63	.	.	ID=2520;Type=deletion;Left=chr7:70849837-70850396+;Right=chr7:70850894-70851292+;Distance=1057;DiscordantMatePairAlignments=63;LeftRepeat=AluSp:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	70849837	70850396	63	+	.	ID=2520;Type=deletion;Left=chr7:70849837-70850396;Right=chr7:70850894-70851292
chr7	CG	SV	70850894	70851292	63	+	.	ID=2520;Type=deletion;Left=chr7:70849837-70850396;Right=chr7:70850894-70851292
chr7	CG	SV	71908201	71914268	11	.	.	ID=2518;Type=deletion;Left=chr7:71908201-71908433+;Right=chr7:71913887-71914268+;Distance=5686;DiscordantMatePairAlignments=11;LeftRepeat=SegDup;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=NM_001145440;NM_001145441;RightGenes=NM_001145440;NM_001145441;XRef=rs67908612 (chr7:71908201-71913781);Frequency=0.53
chr7	CG	SV	71908201	71908433	11	+	.	ID=2518;Type=deletion;Left=chr7:71908201-71908433;Right=chr7:71913887-71914268
chr7	CG	SV	71913887	71914268	11	+	.	ID=2518;Type=deletion;Left=chr7:71908201-71908433;Right=chr7:71913887-71914268
chr7	CG	SV	73466521	73469789	12	.	.	ID=2517;Type=deletion;Left=chr7:73466521-73466798+;Right=chr7:73469339-73469789+;Distance=2818;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;Tandem period 135;LeftGenes=;RightGenes=;XRef=rs71014050 (chr7:73466431-73469249);Frequency=0.88
chr7	CG	SV	73466521	73466798	12	+	.	ID=2517;Type=deletion;Left=chr7:73466521-73466798;Right=chr7:73469339-73469789
chr7	CG	SV	73469339	73469789	12	+	.	ID=2517;Type=deletion;Left=chr7:73466521-73466798;Right=chr7:73469339-73469789
chr7	CG	SV	75505968	75506786	14	.	.	ID=2516;Type=deletion;Left=chr7:75505968-75506437+;Right=chr7:75506618-75506786+;Distance=650;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_016086;RightGenes=NM_016086;XRef=;Frequency=0.00
chr7	CG	SV	75505968	75506437	14	+	.	ID=2516;Type=deletion;Left=chr7:75505968-75506437;Right=chr7:75506618-75506786
chr7	CG	SV	75506618	75506786	14	+	.	ID=2516;Type=deletion;Left=chr7:75505968-75506437;Right=chr7:75506618-75506786
chr7	CG	SV	75705595	75706326	13	.	.	ID=914;Type=tandem-duplication;Left=chr7:75705595-75705954-;Right=chr7:75706225-75706326-;Distance=372;DiscordantMatePairAlignments=13;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSq:SINE:Alu;Self chain;LeftGenes=NM_001110199;RightGenes=NM_001110199;XRef=;Frequency=0.00
chr7	CG	SV	75705595	75705954	13	-	.	ID=914;Type=tandem-duplication;Left=chr7:75705595-75705954;Right=chr7:75706225-75706326
chr7	CG	SV	75706225	75706326	13	-	.	ID=914;Type=tandem-duplication;Left=chr7:75705595-75705954;Right=chr7:75706225-75706326
chr7	CG	SV	87702313	87708278	37	.	.	ID=2511;Type=deletion;Left=chr7:87702313-87702779+;Right=chr7:87707771-87708278+;Distance=5458;DiscordantMatePairAlignments=37;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71855008 (chr7:87702312-87707770);Frequency=0.00
chr7	CG	SV	87702313	87702779	37	+	.	ID=2511;Type=deletion;Left=chr7:87702313-87702779;Right=chr7:87707771-87708278
chr7	CG	SV	87707771	87708278	37	+	.	ID=2511;Type=deletion;Left=chr7:87702313-87702779;Right=chr7:87707771-87708278
chr7	CG	SV	87929243	87930262	25	.	.	ID=2510;Type=deletion;Left=chr7:87929243-87929780+;Right=chr7:87929693-87930262+;Distance=450;DiscordantMatePairAlignments=25;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66468286 (chr7:87929235-87929685);Frequency=1.00
chr7	CG	SV	87929243	87929780	25	+	.	ID=2510;Type=deletion;Left=chr7:87929243-87929780;Right=chr7:87929693-87930262
chr7	CG	SV	87929693	87930262	25	+	.	ID=2510;Type=deletion;Left=chr7:87929243-87929780;Right=chr7:87929693-87930262
chr7	CG	SV	89648345	89650866	28	.	.	ID=2508;Type=deletion;Left=chr7:89648345-89648765+;Right=chr7:89650537-89650866+;Distance=2192;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs66486932 (chr7:89648345-89650537);Frequency=0.76
chr7	CG	SV	89648345	89648765	28	+	.	ID=2508;Type=deletion;Left=chr7:89648345-89648765;Right=chr7:89650537-89650866
chr7	CG	SV	89650537	89650866	28	+	.	ID=2508;Type=deletion;Left=chr7:89648345-89648765;Right=chr7:89650537-89650866
chr7	CG	SV	90263948	90265984	78	.	.	ID=2507;Type=deletion;Left=chr7:90263948-90264459+;Right=chr7:90265557-90265984+;Distance=1609;DiscordantMatePairAlignments=78;LeftRepeat=;RightRepeat=;LeftGenes=NM_012395;RightGenes=NM_012395;XRef=;Frequency=0.00
chr7	CG	SV	90263948	90264459	78	+	.	ID=2507;Type=deletion;Left=chr7:90263948-90264459;Right=chr7:90265557-90265984
chr7	CG	SV	90265557	90265984	78	+	.	ID=2507;Type=deletion;Left=chr7:90263948-90264459;Right=chr7:90265557-90265984
chr7	CG	SV	90316448	90317955	50	.	.	ID=2506;Type=deletion;Left=chr7:90316448-90317038+;Right=chr7:90317541-90317955+;Distance=1093;DiscordantMatePairAlignments=50;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=;LeftGenes=NM_012395;RightGenes=NM_012395;XRef=;Frequency=0.00
chr7	CG	SV	90316448	90317038	50	+	.	ID=2506;Type=deletion;Left=chr7:90316448-90317038;Right=chr7:90317541-90317955
chr7	CG	SV	90317541	90317955	50	+	.	ID=2506;Type=deletion;Left=chr7:90316448-90317038;Right=chr7:90317541-90317955
chr7	CG	SV	93379752	93380827	10	.	.	ID=2503;Type=deletion;Left=chr7:93379752-93379863+;Right=chr7:93380475-93380827+;Distance=723;DiscordantMatePairAlignments=10;LeftRepeat=L2:LINE:L2;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs71879725 (chr7:93379752-93380472);Frequency=0.82
chr7	CG	SV	93379752	93379863	10	+	.	ID=2503;Type=deletion;Left=chr7:93379752-93379863;Right=chr7:93380475-93380827
chr7	CG	SV	93380475	93380827	10	+	.	ID=2503;Type=deletion;Left=chr7:93379752-93379863;Right=chr7:93380475-93380827
chr7	CG	SV	95954317	95955781	79	.	.	ID=2502;Type=deletion;Left=chr7:95954317-95954785+;Right=chr7:95955334-95955781+;Distance=1017;DiscordantMatePairAlignments=79;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	95954317	95954785	79	+	.	ID=2502;Type=deletion;Left=chr7:95954317-95954785;Right=chr7:95955334-95955781
chr7	CG	SV	95955334	95955781	79	+	.	ID=2502;Type=deletion;Left=chr7:95954317-95954785;Right=chr7:95955334-95955781
chr7	CG	SV	96313837	96320422	78	.	.	ID=2501;Type=deletion;Left=chr7:96313837-96314282+;Right=chr7:96319945-96320422+;Distance=6108;DiscordantMatePairAlignments=78;LeftRepeat=Self chain;T-rich:Low_complexity:Low_complexity;RightRepeat=L1MD2:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71014064 (chr7:96313837-96319945);Frequency=1.00
chr7	CG	SV	96313837	96314282	78	+	.	ID=2501;Type=deletion;Left=chr7:96313837-96314282;Right=chr7:96319945-96320422
chr7	CG	SV	96319945	96320422	78	+	.	ID=2501;Type=deletion;Left=chr7:96313837-96314282;Right=chr7:96319945-96320422
chr7	CG	SV	96360692	96361369	12	.	.	ID=2500;Type=deletion;Left=chr7:96360692-96361236+;Right=chr7:96361020-96361369+;Distance=328;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10705266 (chr7:96360692-96361020);Frequency=0.53
chr7	CG	SV	96360692	96361236	12	+	.	ID=2500;Type=deletion;Left=chr7:96360692-96361236;Right=chr7:96361020-96361369
chr7	CG	SV	96361020	96361369	12	+	.	ID=2500;Type=deletion;Left=chr7:96360692-96361236;Right=chr7:96361020-96361369
chr7	CG	SV	96381218	96384993	44	.	.	ID=2499;Type=deletion;Left=chr7:96381218-96381459+;Right=chr7:96384534-96384993+;Distance=3316;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr7	CG	SV	96381218	96381459	44	+	.	ID=2499;Type=deletion;Left=chr7:96381218-96381459;Right=chr7:96384534-96384993
chr7	CG	SV	96384534	96384993	44	+	.	ID=2499;Type=deletion;Left=chr7:96381218-96381459;Right=chr7:96384534-96384993
chr7	CG	SV	99299327	99301919	125	.	.	ID=2498;Type=deletion;Left=chr7:99299327-99299749+;Right=chr7:99301500-99301919+;Distance=2173;DiscordantMatePairAlignments=125;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_022820;NM_057095;NM_057096;RightGenes=NM_022820;NM_057095;NM_057096;XRef=rs72416326 (chr7:99299325-99301498);Frequency=0.15
chr7	CG	SV	99299327	99299749	125	+	.	ID=2498;Type=deletion;Left=chr7:99299327-99299749;Right=chr7:99301500-99301919
chr7	CG	SV	99301500	99301919	125	+	.	ID=2498;Type=deletion;Left=chr7:99299327-99299749;Right=chr7:99301500-99301919
chr7	CG	SV	100175847	100178973	41	.	.	ID=2497;Type=deletion;Left=chr7:100175847-100176212+;Right=chr7:100178470-100178973+;Distance=2623;DiscordantMatePairAlignments=41;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_003386;NM_173059;RightGenes=NM_003386;NM_173059;XRef=;Frequency=0.00
chr7	CG	SV	100175847	100176212	41	+	.	ID=2497;Type=deletion;Left=chr7:100175847-100176212;Right=chr7:100178470-100178973
chr7	CG	SV	100178470	100178973	41	+	.	ID=2497;Type=deletion;Left=chr7:100175847-100176212;Right=chr7:100178470-100178973
chr7	CG	SV	100388123	100389183	13	.	.	ID=906;Type=distal-duplication;Left=chr7:100388123-100388521-;Right=chr7:100388721-100389183-;Distance=662;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	100388123	100388521	13	-	.	ID=906;Type=distal-duplication;Left=chr7:100388123-100388521;Right=chr7:100388721-100389183
chr7	CG	SV	100388721	100389183	13	-	.	ID=906;Type=distal-duplication;Left=chr7:100388123-100388521;Right=chr7:100388721-100389183
chr7	CG	SV	100388680	100389294	12	.	.	ID=2496;Type=distal-duplication;Left=chr7:100388680-100389210+;Right=chr7:100389182-100389294+;Distance=502;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	100388680	100389210	12	+	.	ID=2496;Type=distal-duplication;Left=chr7:100388680-100389210;Right=chr7:100389182-100389294
chr7	CG	SV	100389182	100389294	12	+	.	ID=2496;Type=distal-duplication;Left=chr7:100388680-100389210;Right=chr7:100389182-100389294
chr7	CG	SV	100400459	100401350	12	.	.	ID=2495;Type=deletion;Left=chr7:100400459-100400993+;Right=chr7:100401199-100401350+;Distance=740;DiscordantMatePairAlignments=12;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_001164462;RightGenes=NM_001164462;XRef=;Frequency=1.00
chr7	CG	SV	100400459	100400993	12	+	.	ID=2495;Type=deletion;Left=chr7:100400459-100400993;Right=chr7:100401199-100401350
chr7	CG	SV	100401199	100401350	12	+	.	ID=2495;Type=deletion;Left=chr7:100400459-100400993;Right=chr7:100401199-100401350
chr7	CG	SV	100787986	100790970	34	.	.	ID=2494;Type=deletion;Left=chr7:100787986-100788416+;Right=chr7:100790532-100790970+;Distance=2546;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs66862807 (chr7:100787986-100790532);Frequency=0.41
chr7	CG	SV	100787986	100788416	34	+	.	ID=2494;Type=deletion;Left=chr7:100787986-100788416;Right=chr7:100790532-100790970
chr7	CG	SV	100790532	100790970	34	+	.	ID=2494;Type=deletion;Left=chr7:100787986-100788416;Right=chr7:100790532-100790970
chr7	CG	SV	103974637	103975549	18	.	.	ID=2491;Type=deletion;Left=chr7:103974637-103975078+;Right=chr7:103974968-103975549+;Distance=331;DiscordantMatePairAlignments=18;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_199000;RightGenes=NM_199000;XRef=rs71014073 (chr7:103974637-103974968);Frequency=0.82
chr7	CG	SV	103974637	103975078	18	+	.	ID=2491;Type=deletion;Left=chr7:103974637-103975078;Right=chr7:103974968-103975549
chr7	CG	SV	103974968	103975549	18	+	.	ID=2491;Type=deletion;Left=chr7:103974637-103975078;Right=chr7:103974968-103975549
chr7	CG	SV	113203401	113209950	125	.	.	ID=2488;Type=deletion;Left=chr7:113203401-113204035+;Right=chr7:113209447-113209950+;Distance=6046;DiscordantMatePairAlignments=125;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66950453 (chr7:113203397-113209443);Frequency=1.00
chr7	CG	SV	113203401	113204035	125	+	.	ID=2488;Type=deletion;Left=chr7:113203401-113204035;Right=chr7:113209447-113209950
chr7	CG	SV	113209447	113209950	125	+	.	ID=2488;Type=deletion;Left=chr7:113203401-113204035;Right=chr7:113209447-113209950
chr7	CG	SV	118131051	118131775	15	.	.	ID=2473;Type=deletion;Left=chr7:118131051-118131770+;Right=chr7:118131406-118131775+;Distance=355;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=ERVL-E:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=rs72457038 (chr7:118131036-118131391);Frequency=1.00
chr7	CG	SV	118131051	118131770	15	+	.	ID=2473;Type=deletion;Left=chr7:118131051-118131770;Right=chr7:118131406-118131775
chr7	CG	SV	118131406	118131775	15	+	.	ID=2473;Type=deletion;Left=chr7:118131051-118131770;Right=chr7:118131406-118131775
chr7	CG	SV	122576550	122675783	81	.	.	ID=905;Type=tandem-duplication;Left=chr7:122576550-122577051-;Right=chr7:122675345-122675783-;Distance=98732;DiscordantMatePairAlignments=81;LeftRepeat=;RightRepeat=;LeftGenes=NM_022444;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	122576550	122577051	81	-	.	ID=905;Type=tandem-duplication;Left=chr7:122576550-122577051;Right=chr7:122675345-122675783
chr7	CG	SV	122675345	122675783	81	-	.	ID=905;Type=tandem-duplication;Left=chr7:122576550-122577051;Right=chr7:122675345-122675783
chr7	CG	SV	125833120	125839108	108	.	.	ID=2471;Type=deletion;Left=chr7:125833120-125833620+;Right=chr7:125838681-125839108+;Distance=5561;DiscordantMatePairAlignments=108;LeftRepeat=;RightRepeat=MLT1J:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs66526160 (chr7:125833122-125838683);Frequency=0.94
chr7	CG	SV	125833120	125833620	108	+	.	ID=2471;Type=deletion;Left=chr7:125833120-125833620;Right=chr7:125838681-125839108
chr7	CG	SV	125838681	125839108	108	+	.	ID=2471;Type=deletion;Left=chr7:125833120-125833620;Right=chr7:125838681-125839108
chr7	CG	SV	129011244	129012417	18	.	.	ID=2468;Type=deletion;Left=chr7:129011244-129011709+;Right=chr7:129011888-129012417+;Distance=644;DiscordantMatePairAlignments=18;LeftRepeat=HERVE:LTR:ERV1;RightRepeat=HERVE:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	129011244	129011709	18	+	.	ID=2468;Type=deletion;Left=chr7:129011244-129011709;Right=chr7:129011888-129012417
chr7	CG	SV	129011888	129012417	18	+	.	ID=2468;Type=deletion;Left=chr7:129011244-129011709;Right=chr7:129011888-129012417
chr7	CG	SV	129087340	129089521	23	.	.	ID=2467;Type=deletion;Left=chr7:129087340-129087869+;Right=chr7:129089279-129089521+;Distance=1939;DiscordantMatePairAlignments=23;LeftRepeat=THE1B:LTR:MaLR;RightRepeat=THE1B:LTR:MaLR;LeftGenes=NM_001040110;NM_005011;RightGenes=NM_001040110;NM_005011;XRef=;Frequency=0.00
chr7	CG	SV	129087340	129087869	23	+	.	ID=2467;Type=deletion;Left=chr7:129087340-129087869;Right=chr7:129089279-129089521
chr7	CG	SV	129089279	129089521	23	+	.	ID=2467;Type=deletion;Left=chr7:129087340-129087869;Right=chr7:129089279-129089521
chr7	CG	SV	129573779	129574744	12	.	.	ID=2466;Type=deletion;Left=chr7:129573779-129573948+;Right=chr7:129574478-129574744+;Distance=699;DiscordantMatePairAlignments=12;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr7	CG	SV	129573779	129573948	12	+	.	ID=2466;Type=deletion;Left=chr7:129573779-129573948;Right=chr7:129574478-129574744
chr7	CG	SV	129574478	129574744	12	+	.	ID=2466;Type=deletion;Left=chr7:129573779-129573948;Right=chr7:129574478-129574744
chr7	CG	SV	133961022	133963084	43	.	.	ID=2463;Type=deletion;Left=chr7:133961022-133961378+;Right=chr7:133962723-133963084+;Distance=1701;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=L1MB5:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	133961022	133961378	43	+	.	ID=2463;Type=deletion;Left=chr7:133961022-133961378;Right=chr7:133962723-133963084
chr7	CG	SV	133962723	133963084	43	+	.	ID=2463;Type=deletion;Left=chr7:133961022-133961378;Right=chr7:133962723-133963084
chr7	CG	SV	134000547	134001247	15	.	.	ID=2462;Type=deletion;Left=chr7:134000547-134001048+;Right=chr7:134000970-134001247+;Distance=423;DiscordantMatePairAlignments=15;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001724;NM_199186;RightGenes=NM_001724;NM_199186;XRef=rs71828851 (chr7:134000539-134000962);Frequency=0.59
chr7	CG	SV	134000547	134001048	15	+	.	ID=2462;Type=deletion;Left=chr7:134000547-134001048;Right=chr7:134000970-134001247
chr7	CG	SV	134000970	134001247	15	+	.	ID=2462;Type=deletion;Left=chr7:134000547-134001048;Right=chr7:134000970-134001247
chr7	CG	SV	138255318	138255528	19	.	.	ID=904;Type=tandem-duplication;Left=chr7:138255318-138255431-;Right=chr7:138255419-138255528-;Distance=97;DiscordantMatePairAlignments=19;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=NM_001164665;NM_020910;RightGenes=NM_001164665;NM_020910;XRef=;Frequency=0.12
chr7	CG	SV	138255318	138255431	19	-	.	ID=904;Type=tandem-duplication;Left=chr7:138255318-138255431;Right=chr7:138255419-138255528
chr7	CG	SV	138255419	138255528	19	-	.	ID=904;Type=tandem-duplication;Left=chr7:138255318-138255431;Right=chr7:138255419-138255528
chr7	CG	SV	139877919	139878804	18	.	.	ID=2458;Type=deletion;Left=chr7:139877919-139878281+;Right=chr7:139878383-139878804+;Distance=464;DiscordantMatePairAlignments=18;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_015689;RightGenes=NM_015689;XRef=;Frequency=0.00
chr7	CG	SV	139877919	139878281	18	+	.	ID=2458;Type=deletion;Left=chr7:139877919-139878281;Right=chr7:139878383-139878804
chr7	CG	SV	139878383	139878804	18	+	.	ID=2458;Type=deletion;Left=chr7:139877919-139878281;Right=chr7:139878383-139878804
chr7	CG	SV	150640574	150643472	129	.	.	ID=281;Type=distal-duplication;Left=chr7:150640574-150640972-;Right=chr7:150643038-150643472+;Distance=2066;DiscordantMatePairAlignments=129;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr7	CG	SV	150640574	150640972	129	-	.	ID=281;Type=distal-duplication;Left=chr7:150640574-150640972;Right=chr7:150643038-150643472
chr7	CG	SV	150643038	150643472	129	-	.	ID=281;Type=distal-duplication;Left=chr7:150640574-150640972;Right=chr7:150643038-150643472
chr7	CG	SV	150641358	150643036	102	.	.	ID=3652;Type=distal-duplication;Left=chr7:150641358-150641721+;Right=chr7:150642534-150643036-;Distance=1678;DiscordantMatePairAlignments=102;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr7	CG	SV	150641358	150641721	102	+	.	ID=3652;Type=distal-duplication;Left=chr7:150641358-150641721;Right=chr7:150642534-150643036
chr7	CG	SV	150642534	150643036	102	+	.	ID=3652;Type=distal-duplication;Left=chr7:150641358-150641721;Right=chr7:150642534-150643036
chr7	CG	SV	151876302	151877489	14	.	.	ID=2451;Type=deletion;Left=chr7:151876302-151876796+;Right=chr7:151877267-151877489+;Distance=965;DiscordantMatePairAlignments=14;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=FLAM_C:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs68013241 (chr7:151876302-151877263);Frequency=0.71
chr7	CG	SV	151876302	151876796	14	+	.	ID=2451;Type=deletion;Left=chr7:151876302-151876796;Right=chr7:151877267-151877489
chr7	CG	SV	151877267	151877489	14	+	.	ID=2451;Type=deletion;Left=chr7:151876302-151876796;Right=chr7:151877267-151877489
chr7	CG	SV	151912655	151915755	38	.	.	ID=2450;Type=deletion;Left=chr7:151912655-151912994+;Right=chr7:151915268-151915755+;Distance=2613;DiscordantMatePairAlignments=38;LeftRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;RightRepeat=L1MC3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr7	CG	SV	151912655	151912994	38	+	.	ID=2450;Type=deletion;Left=chr7:151912655-151912994;Right=chr7:151915268-151915755
chr7	CG	SV	151915268	151915755	38	+	.	ID=2450;Type=deletion;Left=chr7:151912655-151912994;Right=chr7:151915268-151915755
chr7	CG	SV	153784753	153786281	90	.	.	ID=2448;Type=deletion;Left=chr7:153784753-153785215+;Right=chr7:153786012-153786281+;Distance=1259;DiscordantMatePairAlignments=90;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=;LeftGenes=NM_001039350;NM_001936;NM_130797;RightGenes=NM_001039350;NM_001936;NM_130797;XRef=rs67517515 (chr7:153784744-153786003);Frequency=0.94
chr7	CG	SV	153784753	153785215	90	+	.	ID=2448;Type=deletion;Left=chr7:153784753-153785215;Right=chr7:153786012-153786281
chr7	CG	SV	153786012	153786281	90	+	.	ID=2448;Type=deletion;Left=chr7:153784753-153785215;Right=chr7:153786012-153786281
chr7	CG	SV	154023048	154030974	28	.	.	ID=2447;Type=deletion;Left=chr7:154023048-154023604+;Right=chr7:154030900-154030974+;Distance=7852;DiscordantMatePairAlignments=28;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_001039350;NM_001936;NM_130797;RightGenes=NM_001039350;NM_001936;NM_130797;XRef=rs71016805 (chr7:154022834-154030686);Frequency=0.53
chr7	CG	SV	154023048	154023604	28	+	.	ID=2447;Type=deletion;Left=chr7:154023048-154023604;Right=chr7:154030900-154030974
chr7	CG	SV	154030900	154030974	28	+	.	ID=2447;Type=deletion;Left=chr7:154023048-154023604;Right=chr7:154030900-154030974
chr7	CG	SV	157722242	157723632	87	.	.	ID=2444;Type=deletion;Left=chr7:157722242-157722684+;Right=chr7:157723216-157723632+;Distance=974;DiscordantMatePairAlignments=87;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_002847;NM_130842;NM_130843;RightGenes=NM_002847;NM_130842;NM_130843;XRef=rs67417246 (chr7:157722243-157723217);Frequency=0.94
chr7	CG	SV	157722242	157722684	87	+	.	ID=2444;Type=deletion;Left=chr7:157722242-157722684;Right=chr7:157723216-157723632
chr7	CG	SV	157723216	157723632	87	+	.	ID=2444;Type=deletion;Left=chr7:157722242-157722684;Right=chr7:157723216-157723632
chr7	CG	SV	157739405	157740580	71	.	.	ID=2443;Type=deletion;Left=chr7:157739405-157739936+;Right=chr7:157740148-157740580+;Distance=743;DiscordantMatePairAlignments=71;LeftRepeat=Self chain;Tandem period 74;RightRepeat=Self chain;Tandem period 74;LeftGenes=NM_002847;NM_130842;NM_130843;RightGenes=NM_002847;NM_130842;NM_130843;XRef=rs67809280 (chr7:157739419-157740162);Frequency=0.76
chr7	CG	SV	157739405	157739936	71	+	.	ID=2443;Type=deletion;Left=chr7:157739405-157739936;Right=chr7:157740148-157740580
chr7	CG	SV	157740148	157740580	71	+	.	ID=2443;Type=deletion;Left=chr7:157739405-157739936;Right=chr7:157740148-157740580
chr7	CG	SV	158193511	158198012	55	.	.	ID=2442;Type=deletion;Left=chr7:158193511-158193950+;Right=chr7:158197525-158198012+;Distance=4014;DiscordantMatePairAlignments=55;LeftRepeat=MER52A:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr7	CG	SV	158193511	158193950	55	+	.	ID=2442;Type=deletion;Left=chr7:158193511-158193950;Right=chr7:158197525-158198012
chr7	CG	SV	158197525	158198012	55	+	.	ID=2442;Type=deletion;Left=chr7:158193511-158193950;Right=chr7:158197525-158198012
chr7	CG	SV	158691774	158692931	17	.	.	ID=2441;Type=deletion;Left=chr7:158691774-158692143+;Right=chr7:158692635-158692931+;Distance=861;DiscordantMatePairAlignments=17;LeftRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;Tandem period 32;Tandem period 61;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr7	CG	SV	158691774	158692143	17	+	.	ID=2441;Type=deletion;Left=chr7:158691774-158692143;Right=chr7:158692635-158692931
chr7	CG	SV	158692635	158692931	17	+	.	ID=2441;Type=deletion;Left=chr7:158691774-158692143;Right=chr7:158692635-158692931
chr7	CG	SV	158802672	158817898	123	.	.	ID=2439;Type=deletion;Left=chr7:158802672-158803102+;Right=chr7:158817342-158817898+;Distance=14670;DiscordantMatePairAlignments=123;LeftRepeat=MER57A:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr7	CG	SV	158802672	158803102	123	+	.	ID=2439;Type=deletion;Left=chr7:158802672-158803102;Right=chr7:158817342-158817898
chr7	CG	SV	158817342	158817898	123	+	.	ID=2439;Type=deletion;Left=chr7:158802672-158803102;Right=chr7:158817342-158817898
chr8	CG	SV	584397	589895	107	.	.	ID=2438;Type=deletion;Left=chr8:584397-584946+;Right=chr8:589414-589895+;Distance=5017;DiscordantMatePairAlignments=107;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66630184 (chr8:584400-589414);Frequency=0.88
chr8	CG	SV	584397	584946	107	+	.	ID=2438;Type=deletion;Left=chr8:584397-584946;Right=chr8:589414-589895
chr8	CG	SV	589414	589895	107	+	.	ID=2438;Type=deletion;Left=chr8:584397-584946;Right=chr8:589414-589895
chr8	CG	SV	950995	955243	21	.	.	ID=2437;Type=deletion;Left=chr8:950995-951183+;Right=chr8:954885-955243+;Distance=3890;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;Tandem period 33;Tandem period 64;Tandem period 97;RightRepeat=SegDup;Self chain;Tandem period 33;Tandem period 64;Tandem period 97;LeftGenes=;RightGenes=;XRef=rs71855433 (chr8:950994-954851);Frequency=0.35
chr8	CG	SV	950995	951183	21	+	.	ID=2437;Type=deletion;Left=chr8:950995-951183;Right=chr8:954885-955243
chr8	CG	SV	954885	955243	21	+	.	ID=2437;Type=deletion;Left=chr8:950995-951183;Right=chr8:954885-955243
chr8	CG	SV	1101341	1101733	19	.	.	ID=896;Type=tandem-duplication;Left=chr8:1101341-1101550-;Right=chr8:1101614-1101733-;Distance=183;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;Tandem period 45;RightRepeat=Self chain;Tandem period 45;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr8	CG	SV	1101341	1101550	19	-	.	ID=896;Type=tandem-duplication;Left=chr8:1101341-1101550;Right=chr8:1101614-1101733
chr8	CG	SV	1101614	1101733	19	-	.	ID=896;Type=tandem-duplication;Left=chr8:1101341-1101550;Right=chr8:1101614-1101733
chr8	CG	SV	1733929	1734677	13	.	.	ID=2434;Type=deletion;Left=chr8:1733929-1734474+;Right=chr8:1734374-1734677+;Distance=445;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 37;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71843993 (chr8:1733872-1734353);Frequency=0.88
chr8	CG	SV	1733929	1734474	13	+	.	ID=2434;Type=deletion;Left=chr8:1733929-1734474;Right=chr8:1734374-1734677
chr8	CG	SV	1734374	1734677	13	+	.	ID=2434;Type=deletion;Left=chr8:1733929-1734474;Right=chr8:1734374-1734677
chr8	CG	SV	2202785	2204228	47	.	.	ID=2432;Type=deletion;Left=chr8:2202785-2203200+;Right=chr8:2203503-2204228+;Distance=718;DiscordantMatePairAlignments=47;LeftRepeat=Self chain;Tandem period 87;RightRepeat=Self chain;Tandem period 87;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	2202785	2203200	47	+	.	ID=2432;Type=deletion;Left=chr8:2202785-2203200;Right=chr8:2203503-2204228
chr8	CG	SV	2203503	2204228	47	+	.	ID=2432;Type=deletion;Left=chr8:2202785-2203200;Right=chr8:2203503-2204228
chr8	CG	SV	3984342	3992597	103	.	.	ID=2430;Type=deletion;Left=chr8:3984342-3984735+;Right=chr8:3991894-3992597+;Distance=7552;DiscordantMatePairAlignments=103;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_033225;RightGenes=NM_033225;XRef=;Frequency=0.00
chr8	CG	SV	3984342	3984735	103	+	.	ID=2430;Type=deletion;Left=chr8:3984342-3984735;Right=chr8:3991894-3992597
chr8	CG	SV	3991894	3992597	103	+	.	ID=2430;Type=deletion;Left=chr8:3984342-3984735;Right=chr8:3991894-3992597
chr8	CG	SV	8423444	8424633	51	.	.	ID=2427;Type=deletion;Left=chr8:8423444-8423934+;Right=chr8:8424358-8424633+;Distance=914;DiscordantMatePairAlignments=51;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=FRAM:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72459952 (chr8:8423440-8424354);Frequency=0.82
chr8	CG	SV	8423444	8423934	51	+	.	ID=2427;Type=deletion;Left=chr8:8423444-8423934;Right=chr8:8424358-8424633
chr8	CG	SV	8424358	8424633	51	+	.	ID=2427;Type=deletion;Left=chr8:8423444-8423934;Right=chr8:8424358-8424633
chr8	CG	SV	9535286	9538714	30	.	.	ID=2426;Type=deletion;Left=chr8:9535286-9535773+;Right=chr8:9538419-9538714+;Distance=3133;DiscordantMatePairAlignments=30;LeftRepeat=MLT1A0:LTR:MaLR;Self chain;RightRepeat=MSTD:LTR:MaLR;Self chain;LeftGenes=NM_003747;RightGenes=NM_003747;XRef=rs66473970 (chr8:9535286-9538419);Frequency=0.06
chr8	CG	SV	9535286	9535773	30	+	.	ID=2426;Type=deletion;Left=chr8:9535286-9535773;Right=chr8:9538419-9538714
chr8	CG	SV	9538419	9538714	30	+	.	ID=2426;Type=deletion;Left=chr8:9535286-9535773;Right=chr8:9538419-9538714
chr8	CG	SV	11282971	11285244	142	.	.	ID=2425;Type=deletion;Left=chr8:11282971-11283559+;Right=chr8:11284620-11285244+;Distance=1649;DiscordantMatePairAlignments=142;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_026814;RightGenes=NR_026814;XRef=;Frequency=0.82
chr8	CG	SV	11282971	11283559	142	+	.	ID=2425;Type=deletion;Left=chr8:11282971-11283559;Right=chr8:11284620-11285244
chr8	CG	SV	11284620	11285244	142	+	.	ID=2425;Type=deletion;Left=chr8:11282971-11283559;Right=chr8:11284620-11285244
chr8	CG	SV	17903784	17905247	212	.	.	ID=2421;Type=deletion;Left=chr8:17903784-17904324+;Right=chr8:17904709-17905247+;Distance=925;DiscordantMatePairAlignments=212;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=L1HS:LINE:L1;LeftGenes=NM_006197;RightGenes=NM_006197;XRef=;Frequency=0.12
chr8	CG	SV	17903784	17904324	212	+	.	ID=2421;Type=deletion;Left=chr8:17903784-17904324;Right=chr8:17904709-17905247
chr8	CG	SV	17904709	17905247	212	+	.	ID=2421;Type=deletion;Left=chr8:17903784-17904324;Right=chr8:17904709-17905247
chr8	CG	SV	18498900	18500590	29	.	.	ID=2420;Type=deletion;Left=chr8:18498900-18499354+;Right=chr8:18500233-18500590+;Distance=1333;DiscordantMatePairAlignments=29;LeftRepeat=L1HS:LINE:L1;L1M3:LINE:L1;RightRepeat=L1M3:LINE:L1;LeftGenes=NM_015310;NM_206909;RightGenes=NM_015310;NM_206909;XRef=rs71189488 (chr8:18498900-18500233);Frequency=1.00
chr8	CG	SV	18498900	18499354	29	+	.	ID=2420;Type=deletion;Left=chr8:18498900-18499354;Right=chr8:18500233-18500590
chr8	CG	SV	18500233	18500590	29	+	.	ID=2420;Type=deletion;Left=chr8:18498900-18499354;Right=chr8:18500233-18500590
chr8	CG	SV	18695738	18697137	75	.	.	ID=2419;Type=deletion;Left=chr8:18695738-18696292+;Right=chr8:18696712-18697137+;Distance=974;DiscordantMatePairAlignments=75;LeftRepeat=LTR5_Hs:LTR:ERVK;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=NM_015310;NM_206909;RightGenes=NM_015310;NM_206909;XRef=rs67390803 (chr8:18695731-18696705);Frequency=1.00
chr8	CG	SV	18695738	18696292	75	+	.	ID=2419;Type=deletion;Left=chr8:18695738-18696292;Right=chr8:18696712-18697137
chr8	CG	SV	18696712	18697137	75	+	.	ID=2419;Type=deletion;Left=chr8:18695738-18696292;Right=chr8:18696712-18697137
chr8	CG	SV	21353732	21354536	16	.	.	ID=894;Type=tandem-duplication;Left=chr8:21353732-21353936-;Right=chr8:21354143-21354536-;Distance=600;DiscordantMatePairAlignments=16;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=L1ME3B:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr8	CG	SV	21353732	21353936	16	-	.	ID=894;Type=tandem-duplication;Left=chr8:21353732-21353936;Right=chr8:21354143-21354536
chr8	CG	SV	21354143	21354536	16	-	.	ID=894;Type=tandem-duplication;Left=chr8:21353732-21353936;Right=chr8:21354143-21354536
chr8	CG	SV	21374069	21381158	96	.	.	ID=2417;Type=deletion;Left=chr8:21374069-21374631+;Right=chr8:21380671-21381158+;Distance=6602;DiscordantMatePairAlignments=96;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	21374069	21374631	96	+	.	ID=2417;Type=deletion;Left=chr8:21374069-21374631;Right=chr8:21380671-21381158
chr8	CG	SV	21380671	21381158	96	+	.	ID=2417;Type=deletion;Left=chr8:21374069-21374631;Right=chr8:21380671-21381158
chr8	CG	SV	23463168	23464296	93	.	.	ID=2414;Type=deletion;Left=chr8:23463168-23463710+;Right=chr8:23463808-23464296+;Distance=640;DiscordantMatePairAlignments=93;LeftRepeat=;RightRepeat=;LeftGenes=NM_016612;RightGenes=NM_016612;XRef=rs71840801 (chr8:23463164-23463804);Frequency=0.18
chr8	CG	SV	23463168	23463710	93	+	.	ID=2414;Type=deletion;Left=chr8:23463168-23463710;Right=chr8:23463808-23464296
chr8	CG	SV	23463808	23464296	93	+	.	ID=2414;Type=deletion;Left=chr8:23463168-23463710;Right=chr8:23463808-23464296
chr8	CG	SV	32799551	32811541	82	.	.	ID=2412;Type=deletion;Left=chr8:32799551-32800013+;Right=chr8:32810807-32811541+;Distance=11256;DiscordantMatePairAlignments=82;LeftRepeat=MLT1I:LTR:MaLR;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	32799551	32800013	82	+	.	ID=2412;Type=deletion;Left=chr8:32799551-32800013;Right=chr8:32810807-32811541
chr8	CG	SV	32810807	32811541	82	+	.	ID=2412;Type=deletion;Left=chr8:32799551-32800013;Right=chr8:32810807-32811541
chr8	CG	SV	37170041	37171582	150	.	.	ID=2411;Type=deletion;Left=chr8:37170041-37170582+;Right=chr8:37171015-37171582+;Distance=974;DiscordantMatePairAlignments=150;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67176554 (chr8:37170037-37171011);Frequency=1.00
chr8	CG	SV	37170041	37170582	150	+	.	ID=2411;Type=deletion;Left=chr8:37170041-37170582;Right=chr8:37171015-37171582
chr8	CG	SV	37171015	37171582	150	+	.	ID=2411;Type=deletion;Left=chr8:37170041-37170582;Right=chr8:37171015-37171582
chr8	CG	SV	40408864	40415745	31	.	.	ID=2410;Type=deletion;Left=chr8:40408864-40409146+;Right=chr8:40415370-40415745+;Distance=6506;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr8	CG	SV	40408864	40409146	31	+	.	ID=2410;Type=deletion;Left=chr8:40408864-40409146;Right=chr8:40415370-40415745
chr8	CG	SV	40415370	40415745	31	+	.	ID=2410;Type=deletion;Left=chr8:40408864-40409146;Right=chr8:40415370-40415745
chr8	CG	SV	43211703	43213125	10	.	.	ID=893;Type=tandem-duplication;Left=chr8:43211703-43211902-;Right=chr8:43212591-43213125-;Distance=1223;DiscordantMatePairAlignments=10;LeftRepeat=SAR:Satellite:Satellite;Self chain;Tandem period 42;RightRepeat=SAR:Satellite:Satellite;Self chain;Tandem period 42;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr8	CG	SV	43211703	43211902	10	-	.	ID=893;Type=tandem-duplication;Left=chr8:43211703-43211902;Right=chr8:43212591-43213125
chr8	CG	SV	43212591	43213125	10	-	.	ID=893;Type=tandem-duplication;Left=chr8:43211703-43211902;Right=chr8:43212591-43213125
chr8	CG	SV	47636567	87780291	31	.	.	ID=279;Type=probable-inversion;Left=chr8:47636567-47636898-;Right=chr8:87779755-87780291+;Distance=40142857;DiscordantMatePairAlignments=31;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_019098;XRef=;Frequency=0.59
chr8	CG	SV	47636567	47636898	31	-	.	ID=279;Type=probable-inversion;Left=chr8:47636567-47636898;Right=chr8:87779755-87780291
chr8	CG	SV	87779755	87780291	31	-	.	ID=279;Type=probable-inversion;Left=chr8:47636567-47636898;Right=chr8:87779755-87780291
chr8	CG	SV	58278358	58285598	118	.	.	ID=890;Type=complex;Left=chr8:58278358-58278874-;Right=chr8:58285034-58285598-;Distance=6724;DiscordantMatePairAlignments=118;LeftRepeat=MER50:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58278358	58278874	118	-	.	ID=890;Type=complex;Left=chr8:58278358-58278874;Right=chr8:58285034-58285598
chr8	CG	SV	58285034	58285598	118	-	.	ID=890;Type=complex;Left=chr8:58278358-58278874;Right=chr8:58285034-58285598
chr8	CG	SV	58279452	58281377	56	.	.	ID=2397;Type=complex;Left=chr8:58279452-58279922+;Right=chr8:58280826-58281377+;Distance=1374;DiscordantMatePairAlignments=56;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58279452	58279922	56	+	.	ID=2397;Type=complex;Left=chr8:58279452-58279922;Right=chr8:58280826-58281377
chr8	CG	SV	58280826	58281377	56	+	.	ID=2397;Type=complex;Left=chr8:58279452-58279922;Right=chr8:58280826-58281377
chr8	CG	SV	58280392	58290572	79	.	.	ID=889;Type=complex;Left=chr8:58280392-58280822-;Right=chr8:58290098-58290572-;Distance=9750;DiscordantMatePairAlignments=79;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58280392	58280822	79	-	.	ID=889;Type=complex;Left=chr8:58280392-58280822;Right=chr8:58290098-58290572
chr8	CG	SV	58290098	58290572	79	-	.	ID=889;Type=complex;Left=chr8:58280392-58280822;Right=chr8:58290098-58290572
chr8	CG	SV	58285605	58290515	366	.	.	ID=2396;Type=complex;Left=chr8:58285605-58286320+;Right=chr8:58289986-58290515+;Distance=4381;DiscordantMatePairAlignments=366;LeftRepeat=Self chain;RightRepeat=MER50:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58285605	58286320	366	+	.	ID=2396;Type=complex;Left=chr8:58285605-58286320;Right=chr8:58289986-58290515
chr8	CG	SV	58289986	58290515	366	+	.	ID=2396;Type=complex;Left=chr8:58285605-58286320;Right=chr8:58289986-58290515
chr8	CG	SV	59241018	59241912	16	.	.	ID=2395;Type=deletion;Left=chr8:59241018-59241459+;Right=chr8:59241354-59241912+;Distance=336;DiscordantMatePairAlignments=16;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67243806 (chr8:59241018-59241354);Frequency=1.00
chr8	CG	SV	59241018	59241459	16	+	.	ID=2395;Type=deletion;Left=chr8:59241018-59241459;Right=chr8:59241354-59241912
chr8	CG	SV	59241354	59241912	16	+	.	ID=2395;Type=deletion;Left=chr8:59241018-59241459;Right=chr8:59241354-59241912
chr8	CG	SV	61159105	61170687	19	.	.	ID=2394;Type=deletion;Left=chr8:61159105-61159467+;Right=chr8:61170330-61170687+;Distance=11225;DiscordantMatePairAlignments=19;LeftRepeat=MLT1A0:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	61159105	61159467	19	+	.	ID=2394;Type=deletion;Left=chr8:61159105-61159467;Right=chr8:61170330-61170687
chr8	CG	SV	61170330	61170687	19	+	.	ID=2394;Type=deletion;Left=chr8:61159105-61159467;Right=chr8:61170330-61170687
chr8	CG	SV	63377906	63388221	58	.	.	ID=2392;Type=deletion;Left=chr8:63377906-63378276+;Right=chr8:63387784-63388221+;Distance=9878;DiscordantMatePairAlignments=58;LeftRepeat=Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=NM_173688;RightGenes=NM_173688;XRef=;Frequency=0.00
chr8	CG	SV	63377906	63378276	58	+	.	ID=2392;Type=deletion;Left=chr8:63377906-63378276;Right=chr8:63387784-63388221
chr8	CG	SV	63387784	63388221	58	+	.	ID=2392;Type=deletion;Left=chr8:63377906-63378276;Right=chr8:63387784-63388221
chr8	CG	SV	65497239	65498231	41	.	.	ID=2391;Type=deletion;Left=chr8:65497239-65497658+;Right=chr8:65497739-65498231+;Distance=500;DiscordantMatePairAlignments=41;LeftRepeat=L1MB7:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66505518 (chr8:65497245-65497739);Frequency=0.00
chr8	CG	SV	65497239	65497658	41	+	.	ID=2391;Type=deletion;Left=chr8:65497239-65497658;Right=chr8:65497739-65498231
chr8	CG	SV	65497739	65498231	41	+	.	ID=2391;Type=deletion;Left=chr8:65497239-65497658;Right=chr8:65497739-65498231
chr8	CG	SV	71614179	71615339	59	.	.	ID=2388;Type=deletion;Left=chr8:71614179-71614666+;Right=chr8:71615046-71615339+;Distance=867;DiscordantMatePairAlignments=59;LeftRepeat=FRAM:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67764120 (chr8:71614179-71615046);Frequency=0.00
chr8	CG	SV	71614179	71614666	59	+	.	ID=2388;Type=deletion;Left=chr8:71614179-71614666;Right=chr8:71615046-71615339
chr8	CG	SV	71615046	71615339	59	+	.	ID=2388;Type=deletion;Left=chr8:71614179-71614666;Right=chr8:71615046-71615339
chr8	CG	SV	73950324	73956874	132	.	.	ID=2386;Type=deletion;Left=chr8:73950324-73950775+;Right=chr8:73956382-73956874+;Distance=6058;DiscordantMatePairAlignments=132;LeftRepeat=;RightRepeat=;LeftGenes=NM_004770;RightGenes=NM_004770;XRef=rs71640573 (chr8:73950319-73956377);Frequency=1.00
chr8	CG	SV	73950324	73950775	132	+	.	ID=2386;Type=deletion;Left=chr8:73950324-73950775;Right=chr8:73956382-73956874
chr8	CG	SV	73956382	73956874	132	+	.	ID=2386;Type=deletion;Left=chr8:73950324-73950775;Right=chr8:73956382-73956874
chr8	CG	SV	75525426	75529962	87	.	.	ID=2385;Type=deletion;Left=chr8:75525426-75525814+;Right=chr8:75529519-75529962+;Distance=4093;DiscordantMatePairAlignments=87;LeftRepeat=L1MEb:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr8	CG	SV	75525426	75525814	87	+	.	ID=2385;Type=deletion;Left=chr8:75525426-75525814;Right=chr8:75529519-75529962
chr8	CG	SV	75529519	75529962	87	+	.	ID=2385;Type=deletion;Left=chr8:75525426-75525814;Right=chr8:75529519-75529962
chr8	CG	SV	87168841	87170360	30	.	.	ID=2384;Type=deletion;Left=chr8:87168841-87169256+;Right=chr8:87169927-87170360+;Distance=1086;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	87168841	87169256	30	+	.	ID=2384;Type=deletion;Left=chr8:87168841-87169256;Right=chr8:87169927-87170360
chr8	CG	SV	87169927	87170360	30	+	.	ID=2384;Type=deletion;Left=chr8:87168841-87169256;Right=chr8:87169927-87170360
chr8	CG	SV	91479763	91483671	10	.	.	ID=2382;Type=deletion;Left=chr8:91479763-91480053+;Right=chr8:91483305-91483671+;Distance=3542;DiscordantMatePairAlignments=10;LeftRepeat=L1PA3:LINE:L1;RightRepeat=L1MA4A:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	91479763	91480053	10	+	.	ID=2382;Type=deletion;Left=chr8:91479763-91480053;Right=chr8:91483305-91483671
chr8	CG	SV	91483305	91483671	10	+	.	ID=2382;Type=deletion;Left=chr8:91479763-91480053;Right=chr8:91483305-91483671
chr8	CG	SV	94306592	94313141	111	.	.	ID=2381;Type=deletion;Left=chr8:94306592-94307067+;Right=chr8:94312779-94313141+;Distance=6187;DiscordantMatePairAlignments=111;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	94306592	94307067	111	+	.	ID=2381;Type=deletion;Left=chr8:94306592-94307067;Right=chr8:94312779-94313141
chr8	CG	SV	94312779	94313141	111	+	.	ID=2381;Type=deletion;Left=chr8:94306592-94307067;Right=chr8:94312779-94313141
chr8	CG	SV	95716149	95718417	10	.	.	ID=2380;Type=deletion;Left=chr8:95716149-95716573+;Right=chr8:95718212-95718417+;Distance=2063;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72509648 (chr8:95716040-95718103);Frequency=0.00
chr8	CG	SV	95716149	95716573	10	+	.	ID=2380;Type=deletion;Left=chr8:95716149-95716573;Right=chr8:95718212-95718417
chr8	CG	SV	95718212	95718417	10	+	.	ID=2380;Type=deletion;Left=chr8:95716149-95716573;Right=chr8:95718212-95718417
chr8	CG	SV	96944404	96948905	21	.	.	ID=2379;Type=deletion;Left=chr8:96944404-96944849+;Right=chr8:96948769-96948905+;Distance=4365;DiscordantMatePairAlignments=21;LeftRepeat=MER74A:LTR:ERVL;RightRepeat=L1MC3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr8	CG	SV	96944404	96944849	21	+	.	ID=2379;Type=deletion;Left=chr8:96944404-96944849;Right=chr8:96948769-96948905
chr8	CG	SV	96948769	96948905	21	+	.	ID=2379;Type=deletion;Left=chr8:96944404-96944849;Right=chr8:96948769-96948905
chr8	CG	SV	97167264	97168011	17	.	.	ID=2378;Type=deletion;Left=chr8:97167264-97167793+;Right=chr8:97167616-97168011+;Distance=352;DiscordantMatePairAlignments=17;LeftRepeat=AluY:SINE:Alu;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs72382436 (chr8:97167249-97167601);Frequency=1.00
chr8	CG	SV	97167264	97167793	17	+	.	ID=2378;Type=deletion;Left=chr8:97167264-97167793;Right=chr8:97167616-97168011
chr8	CG	SV	97167616	97168011	17	+	.	ID=2378;Type=deletion;Left=chr8:97167264-97167793;Right=chr8:97167616-97168011
chr8	CG	SV	102690122	102696538	52	.	.	ID=2375;Type=deletion;Left=chr8:102690122-102690530+;Right=chr8:102695967-102696538+;Distance=5845;DiscordantMatePairAlignments=52;LeftRepeat=L1MC4:LINE:L1;RightRepeat=;LeftGenes=NM_024915;RightGenes=NM_024915;XRef=;Frequency=0.10
chr8	CG	SV	102690122	102690530	52	+	.	ID=2375;Type=deletion;Left=chr8:102690122-102690530;Right=chr8:102695967-102696538
chr8	CG	SV	102695967	102696538	52	+	.	ID=2375;Type=deletion;Left=chr8:102690122-102690530;Right=chr8:102695967-102696538
chr8	CG	SV	106865709	106867040	121	.	.	ID=2372;Type=deletion;Left=chr8:106865709-106866236+;Right=chr8:106866483-106867040+;Distance=774;DiscordantMatePairAlignments=121;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_012082;RightGenes=NM_012082;XRef=;Frequency=0.00
chr8	CG	SV	106865709	106866236	121	+	.	ID=2372;Type=deletion;Left=chr8:106865709-106866236;Right=chr8:106866483-106867040
chr8	CG	SV	106866483	106867040	121	+	.	ID=2372;Type=deletion;Left=chr8:106865709-106866236;Right=chr8:106866483-106867040
chr8	CG	SV	108638469	108638539	14	.	.	ID=3644;Type=probable-inversion;Left=chr8:108638469-108638956+;Right=chr8:108638466-108638539-;Distance=70;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	108638469	108638956	14	+	.	ID=3644;Type=probable-inversion;Left=chr8:108638469-108638956;Right=chr8:108638466-108638539
chr8	CG	SV	108638466	108638539	14	+	.	ID=3644;Type=probable-inversion;Left=chr8:108638469-108638956;Right=chr8:108638466-108638539
chr8	CG	SV	113154612	113155557	22	.	.	ID=2368;Type=deletion;Left=chr8:113154612-113155101+;Right=chr8:113154942-113155557+;Distance=330;DiscordantMatePairAlignments=22;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=L1M2:LINE:L1;LeftGenes=;RightGenes=;XRef=rs6150764 (chr8:113154612-113154942);Frequency=1.00
chr8	CG	SV	113154612	113155101	22	+	.	ID=2368;Type=deletion;Left=chr8:113154612-113155101;Right=chr8:113154942-113155557
chr8	CG	SV	113154942	113155557	22	+	.	ID=2368;Type=deletion;Left=chr8:113154612-113155101;Right=chr8:113154942-113155557
chr8	CG	SV	120088801	120097417	58	.	.	ID=2363;Type=deletion;Left=chr8:120088801-120089186+;Right=chr8:120096957-120097417+;Distance=8156;DiscordantMatePairAlignments=58;LeftRepeat=;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	120088801	120089186	58	+	.	ID=2363;Type=deletion;Left=chr8:120088801-120089186;Right=chr8:120096957-120097417
chr8	CG	SV	120096957	120097417	58	+	.	ID=2363;Type=deletion;Left=chr8:120088801-120089186;Right=chr8:120096957-120097417
chr8	CG	SV	121750866	121751779	14	.	.	ID=2362;Type=deletion;Left=chr8:121750866-121751288+;Right=chr8:121751185-121751779+;Distance=319;DiscordantMatePairAlignments=14;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MER5A1:DNA:MER1_type;LeftGenes=NM_021021;RightGenes=NM_021021;XRef=rs67216429 (chr8:121750866-121751185);Frequency=0.65
chr8	CG	SV	121750866	121751288	14	+	.	ID=2362;Type=deletion;Left=chr8:121750866-121751288;Right=chr8:121751185-121751779
chr8	CG	SV	121751185	121751779	14	+	.	ID=2362;Type=deletion;Left=chr8:121750866-121751288;Right=chr8:121751185-121751779
chr8	CG	SV	126664305	126670768	178	.	.	ID=2360;Type=deletion;Left=chr8:126664305-126664869+;Right=chr8:126670318-126670768+;Distance=6013;DiscordantMatePairAlignments=178;LeftRepeat=;RightRepeat=MER113:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs67657993 (chr8:126664311-126670324);Frequency=1.00
chr8	CG	SV	126664305	126664869	178	+	.	ID=2360;Type=deletion;Left=chr8:126664305-126664869;Right=chr8:126670318-126670768
chr8	CG	SV	126670318	126670768	178	+	.	ID=2360;Type=deletion;Left=chr8:126664305-126664869;Right=chr8:126670318-126670768
chr8	CG	SV	126750571	126751420	10	.	.	ID=2359;Type=deletion;Left=chr8:126750571-126751091+;Right=chr8:126750903-126751420+;Distance=332;DiscordantMatePairAlignments=10;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66784611 (chr8:126750571-126750902);Frequency=0.76
chr8	CG	SV	126750571	126751091	10	+	.	ID=2359;Type=deletion;Left=chr8:126750571-126751091;Right=chr8:126750903-126751420
chr8	CG	SV	126750903	126751420	10	+	.	ID=2359;Type=deletion;Left=chr8:126750571-126751091;Right=chr8:126750903-126751420
chr8	CG	SV	129534339	129541128	162	.	.	ID=2358;Type=deletion;Left=chr8:129534339-129534930+;Right=chr8:129540452-129541128+;Distance=6113;DiscordantMatePairAlignments=162;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67264625 (chr8:129534335-129540448);Frequency=1.00
chr8	CG	SV	129534339	129534930	162	+	.	ID=2358;Type=deletion;Left=chr8:129534339-129534930;Right=chr8:129540452-129541128
chr8	CG	SV	129540452	129541128	162	+	.	ID=2358;Type=deletion;Left=chr8:129534339-129534930;Right=chr8:129540452-129541128
chr8	CG	SV	135152100	135158834	61	.	.	ID=2356;Type=deletion;Left=chr8:135152100-135152578+;Right=chr8:135158202-135158834+;Distance=6102;DiscordantMatePairAlignments=61;LeftRepeat=L1MEe:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66697932 (chr8:135152111-135158213);Frequency=0.53
chr8	CG	SV	135152100	135152578	61	+	.	ID=2356;Type=deletion;Left=chr8:135152100-135152578;Right=chr8:135158202-135158834
chr8	CG	SV	135158202	135158834	61	+	.	ID=2356;Type=deletion;Left=chr8:135152100-135152578;Right=chr8:135158202-135158834
chr8	CG	SV	137229379	137233540	131	.	.	ID=2355;Type=deletion;Left=chr8:137229379-137229856+;Right=chr8:137233082-137233540+;Distance=3703;DiscordantMatePairAlignments=131;LeftRepeat=ERVL-E:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67361622 (chr8:137229377-137233080);Frequency=1.00
chr8	CG	SV	137229379	137229856	131	+	.	ID=2355;Type=deletion;Left=chr8:137229379-137229856;Right=chr8:137233082-137233540
chr8	CG	SV	137233082	137233540	131	+	.	ID=2355;Type=deletion;Left=chr8:137229379-137229856;Right=chr8:137233082-137233540
chr8	CG	SV	138812149	138813691	62	.	.	ID=2353;Type=deletion;Left=chr8:138812149-138812551+;Right=chr8:138813045-138813691+;Distance=896;DiscordantMatePairAlignments=62;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67866144 (chr8:138812147-138813043);Frequency=1.00
chr8	CG	SV	138812149	138812551	62	+	.	ID=2353;Type=deletion;Left=chr8:138812149-138812551;Right=chr8:138813045-138813691
chr8	CG	SV	138813045	138813691	62	+	.	ID=2353;Type=deletion;Left=chr8:138812149-138812551;Right=chr8:138813045-138813691
chr8	CG	SV	144127954	144128763	15	.	.	ID=2352;Type=deletion;Left=chr8:144127954-144128347+;Right=chr8:144128539-144128763+;Distance=585;DiscordantMatePairAlignments=15;LeftRepeat=(CAGGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 15;Tandem period 31;Tandem period 46;RightRepeat=Self chain;Tandem period 15;Tandem period 31;Tandem period 46;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr8	CG	SV	144127954	144128347	15	+	.	ID=2352;Type=deletion;Left=chr8:144127954-144128347;Right=chr8:144128539-144128763
chr8	CG	SV	144128539	144128763	15	+	.	ID=2352;Type=deletion;Left=chr8:144127954-144128347;Right=chr8:144128539-144128763
chr8	CG	SV	144457692	144460115	35	.	.	ID=2351;Type=deletion;Left=chr8:144457692-144458158+;Right=chr8:144459606-144460115+;Distance=1914;DiscordantMatePairAlignments=35;LeftRepeat=;RightRepeat=AluSq:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	144457692	144458158	35	+	.	ID=2351;Type=deletion;Left=chr8:144457692-144458158;Right=chr8:144459606-144460115
chr8	CG	SV	144459606	144460115	35	+	.	ID=2351;Type=deletion;Left=chr8:144457692-144458158;Right=chr8:144459606-144460115
chr8	CG	SV	146027877	146029027	10	.	.	ID=2348;Type=deletion;Left=chr8:146027877-146028260+;Right=chr8:146028688-146029027+;Distance=811;DiscordantMatePairAlignments=10;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_003416;RightGenes=NM_003416;XRef=rs71976446 (chr8:146027825-146028636);Frequency=0.82
chr8	CG	SV	146027877	146028260	10	+	.	ID=2348;Type=deletion;Left=chr8:146027877-146028260;Right=chr8:146028688-146029027
chr8	CG	SV	146028688	146029027	10	+	.	ID=2348;Type=deletion;Left=chr8:146027877-146028260;Right=chr8:146028688-146029027
chr9	CG	SV	504143	518381	29	.	.	ID=2347;Type=deletion;Left=chr9:504143-504525+;Right=chr9:517933-518381+;Distance=13790;DiscordantMatePairAlignments=29;LeftRepeat=(TCCC)n:Simple_repeat:Simple_repeat;Tandem CTCC;Tandem period 16;Tandem period 8;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_015158;RightGenes=NM_015158;XRef=;Frequency=0.00
chr9	CG	SV	504143	504525	29	+	.	ID=2347;Type=deletion;Left=chr9:504143-504525;Right=chr9:517933-518381
chr9	CG	SV	517933	518381	29	+	.	ID=2347;Type=deletion;Left=chr9:504143-504525;Right=chr9:517933-518381
chr9	CG	SV	632168	638770	62	.	.	ID=2346;Type=deletion;Left=chr9:632168-632617+;Right=chr9:638239-638770+;Distance=6071;DiscordantMatePairAlignments=62;LeftRepeat=;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_015158;RightGenes=NM_015158;XRef=;Frequency=0.00
chr9	CG	SV	632168	632617	62	+	.	ID=2346;Type=deletion;Left=chr9:632168-632617;Right=chr9:638239-638770
chr9	CG	SV	638239	638770	62	+	.	ID=2346;Type=deletion;Left=chr9:632168-632617;Right=chr9:638239-638770
chr9	CG	SV	697537	698492	11	.	.	ID=2345;Type=deletion;Left=chr9:697537-697786+;Right=chr9:698278-698492+;Distance=741;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 57;RightRepeat=Self chain;Tandem period 57;LeftGenes=NM_015158;NM_153186;RightGenes=NM_015158;NM_153186;XRef=;Frequency=0.29
chr9	CG	SV	697537	697786	11	+	.	ID=2345;Type=deletion;Left=chr9:697537-697786;Right=chr9:698278-698492
chr9	CG	SV	698278	698492	11	+	.	ID=2345;Type=deletion;Left=chr9:697537-697786;Right=chr9:698278-698492
chr9	CG	SV	2803890	2804258	10	.	.	ID=883;Type=tandem-duplication;Left=chr9:2803890-2804057-;Right=chr9:2804053-2804258-;Distance=201;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_014878;RightGenes=NM_014878;XRef=;Frequency=0.18
chr9	CG	SV	2803890	2804057	10	-	.	ID=883;Type=tandem-duplication;Left=chr9:2803890-2804057;Right=chr9:2804053-2804258
chr9	CG	SV	2804053	2804258	10	-	.	ID=883;Type=tandem-duplication;Left=chr9:2803890-2804057;Right=chr9:2804053-2804258
chr9	CG	SV	4366416	4368105	47	.	.	ID=2343;Type=deletion;Left=chr9:4366416-4366842+;Right=chr9:4367642-4368105+;Distance=1226;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr9	CG	SV	4366416	4366842	47	+	.	ID=2343;Type=deletion;Left=chr9:4366416-4366842;Right=chr9:4367642-4368105
chr9	CG	SV	4367642	4368105	47	+	.	ID=2343;Type=deletion;Left=chr9:4366416-4366842;Right=chr9:4367642-4368105
chr9	CG	SV	5631633	5633150	20	.	.	ID=2342;Type=deletion;Left=chr9:5631633-5632256+;Right=chr9:5632811-5633150+;Distance=1178;DiscordantMatePairAlignments=20;LeftRepeat=L1M1:LINE:L1;RightRepeat=;LeftGenes=NM_001135920;RightGenes=NM_001135920;XRef=;Frequency=0.65
chr9	CG	SV	5631633	5632256	20	+	.	ID=2342;Type=deletion;Left=chr9:5631633-5632256;Right=chr9:5632811-5633150
chr9	CG	SV	5632811	5633150	20	+	.	ID=2342;Type=deletion;Left=chr9:5631633-5632256;Right=chr9:5632811-5633150
chr9	CG	SV	6719122	6720311	23	.	.	ID=2341;Type=deletion;Left=chr9:6719122-6719737+;Right=chr9:6720109-6720311+;Distance=987;DiscordantMatePairAlignments=23;LeftRepeat=AluSg1:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_001146696;RightGenes=NM_001146696;XRef=;Frequency=0.59
chr9	CG	SV	6719122	6719737	23	+	.	ID=2341;Type=deletion;Left=chr9:6719122-6719737;Right=chr9:6720109-6720311
chr9	CG	SV	6720109	6720311	23	+	.	ID=2341;Type=deletion;Left=chr9:6719122-6719737;Right=chr9:6720109-6720311
chr9	CG	SV	8630851	8632316	52	.	.	ID=2339;Type=deletion;Left=chr9:8630851-8631232+;Right=chr9:8631666-8632316+;Distance=815;DiscordantMatePairAlignments=52;LeftRepeat=;RightRepeat=;LeftGenes=NM_001040712;NM_002839;NM_130391;NM_130392;NM_130393;RightGenes=NM_001040712;NM_002839;NM_130391;NM_130392;NM_130393;XRef=;Frequency=0.24
chr9	CG	SV	8630851	8631232	52	+	.	ID=2339;Type=deletion;Left=chr9:8630851-8631232;Right=chr9:8631666-8632316
chr9	CG	SV	8631666	8632316	52	+	.	ID=2339;Type=deletion;Left=chr9:8630851-8631232;Right=chr9:8631666-8632316
chr9	CG	SV	10394564	10395469	26	.	.	ID=2336;Type=deletion;Left=chr9:10394564-10394944+;Right=chr9:10395094-10395469+;Distance=530;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=;LeftGenes=NM_001040712;NM_002839;NM_130391;NM_130392;NM_130393;RightGenes=NM_001040712;NM_002839;NM_130391;NM_130392;NM_130393;XRef=rs71315285 (chr9:10394564-10395094);Frequency=1.00
chr9	CG	SV	10394564	10394944	26	+	.	ID=2336;Type=deletion;Left=chr9:10394564-10394944;Right=chr9:10395094-10395469
chr9	CG	SV	10395094	10395469	26	+	.	ID=2336;Type=deletion;Left=chr9:10394564-10394944;Right=chr9:10395094-10395469
chr9	CG	SV	12546846	12550095	126	.	.	ID=2335;Type=deletion;Left=chr9:12546846-12547322+;Right=chr9:12549659-12550095+;Distance=2813;DiscordantMatePairAlignments=126;LeftRepeat=L1HS:LINE:L1;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr9	CG	SV	12546846	12547322	126	+	.	ID=2335;Type=deletion;Left=chr9:12546846-12547322;Right=chr9:12549659-12550095
chr9	CG	SV	12549659	12550095	126	+	.	ID=2335;Type=deletion;Left=chr9:12546846-12547322;Right=chr9:12549659-12550095
chr9	CG	SV	15805309	15812304	27	.	.	ID=2333;Type=deletion;Left=chr9:15805309-15805766+;Right=chr9:15811943-15812304+;Distance=6634;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=L1PA4:LINE:L1;LeftGenes=NM_173550;RightGenes=NM_173550;XRef=;Frequency=0.65
chr9	CG	SV	15805309	15805766	27	+	.	ID=2333;Type=deletion;Left=chr9:15805309-15805766;Right=chr9:15811943-15812304
chr9	CG	SV	15811943	15812304	27	+	.	ID=2333;Type=deletion;Left=chr9:15805309-15805766;Right=chr9:15811943-15812304
chr9	CG	SV	16379407	16380358	13	.	.	ID=2332;Type=deletion;Left=chr9:16379407-16379858+;Right=chr9:16379744-16380358+;Distance=337;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35533078 (chr9:16379407-16379743);Frequency=1.00
chr9	CG	SV	16379407	16379858	13	+	.	ID=2332;Type=deletion;Left=chr9:16379407-16379858;Right=chr9:16379744-16380358
chr9	CG	SV	16379744	16380358	13	+	.	ID=2332;Type=deletion;Left=chr9:16379407-16379858;Right=chr9:16379744-16380358
chr9	CG	SV	22643395	22644357	15	.	.	ID=2330;Type=deletion;Left=chr9:22643395-22643834+;Right=chr9:22643769-22644357+;Distance=374;DiscordantMatePairAlignments=15;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr9	CG	SV	22643395	22643834	15	+	.	ID=2330;Type=deletion;Left=chr9:22643395-22643834;Right=chr9:22643769-22644357
chr9	CG	SV	22643769	22644357	15	+	.	ID=2330;Type=deletion;Left=chr9:22643395-22643834;Right=chr9:22643769-22644357
chr9	CG	SV	22981732	22982675	44	.	.	ID=2329;Type=deletion;Left=chr9:22981732-22982171+;Right=chr9:22982242-22982675+;Distance=510;DiscordantMatePairAlignments=44;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72350539 (chr9:22981732-22982242);Frequency=0.12
chr9	CG	SV	22981732	22982171	44	+	.	ID=2329;Type=deletion;Left=chr9:22981732-22982171;Right=chr9:22982242-22982675
chr9	CG	SV	22982242	22982675	44	+	.	ID=2329;Type=deletion;Left=chr9:22981732-22982171;Right=chr9:22982242-22982675
chr9	CG	SV	23352801	23368211	111	.	.	ID=2327;Type=deletion;Left=chr9:23352801-23353295+;Right=chr9:23367685-23368211+;Distance=14884;DiscordantMatePairAlignments=111;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr9	CG	SV	23352801	23353295	111	+	.	ID=2327;Type=deletion;Left=chr9:23352801-23353295;Right=chr9:23367685-23368211
chr9	CG	SV	23367685	23368211	111	+	.	ID=2327;Type=deletion;Left=chr9:23352801-23353295;Right=chr9:23367685-23368211
chr9	CG	SV	24898218	24898664	14	.	.	ID=881;Type=tandem-duplication;Left=chr9:24898218-24898453-;Right=chr9:24898434-24898664-;Distance=211;DiscordantMatePairAlignments=14;LeftRepeat=MER84:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr9	CG	SV	24898218	24898453	14	-	.	ID=881;Type=tandem-duplication;Left=chr9:24898218-24898453;Right=chr9:24898434-24898664
chr9	CG	SV	24898434	24898664	14	-	.	ID=881;Type=tandem-duplication;Left=chr9:24898218-24898453;Right=chr9:24898434-24898664
chr9	CG	SV	28067563	28069685	60	.	.	ID=2326;Type=deletion;Left=chr9:28067563-28068000+;Right=chr9:28069210-28069685+;Distance=1647;DiscordantMatePairAlignments=60;LeftRepeat=;RightRepeat=L3:LINE:CR1;LeftGenes=NM_152570;RightGenes=NM_152570;XRef=;Frequency=0.10
chr9	CG	SV	28067563	28068000	60	+	.	ID=2326;Type=deletion;Left=chr9:28067563-28068000;Right=chr9:28069210-28069685
chr9	CG	SV	28069210	28069685	60	+	.	ID=2326;Type=deletion;Left=chr9:28067563-28068000;Right=chr9:28069210-28069685
chr9	CG	SV	29082577	29088377	49	.	.	ID=2325;Type=deletion;Left=chr9:29082577-29082997+;Right=chr9:29088017-29088377+;Distance=5440;DiscordantMatePairAlignments=49;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr9	CG	SV	29082577	29082997	49	+	.	ID=2325;Type=deletion;Left=chr9:29082577-29082997;Right=chr9:29088017-29088377
chr9	CG	SV	29088017	29088377	49	+	.	ID=2325;Type=deletion;Left=chr9:29082577-29082997;Right=chr9:29088017-29088377
chr9	CG	SV	29614709	29615637	10	.	.	ID=2324;Type=deletion;Left=chr9:29614709-29615242+;Right=chr9:29615029-29615637+;Distance=320;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72531416 (chr9:29614691-29615012);Frequency=1.00
chr9	CG	SV	29614709	29615242	10	+	.	ID=2324;Type=deletion;Left=chr9:29614709-29615242;Right=chr9:29615029-29615637
chr9	CG	SV	29615029	29615637	10	+	.	ID=2324;Type=deletion;Left=chr9:29614709-29615242;Right=chr9:29615029-29615637
chr9	CG	SV	31281356	31283051	74	.	.	ID=2323;Type=deletion;Left=chr9:31281356-31281892+;Right=chr9:31282673-31283051+;Distance=1317;DiscordantMatePairAlignments=74;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1PA16:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71965107 (chr9:31281356-31282673);Frequency=0.71
chr9	CG	SV	31281356	31281892	74	+	.	ID=2323;Type=deletion;Left=chr9:31281356-31281892;Right=chr9:31282673-31283051
chr9	CG	SV	31282673	31283051	74	+	.	ID=2323;Type=deletion;Left=chr9:31281356-31281892;Right=chr9:31282673-31283051
chr9	CG	SV	33203182	33204208	16	.	.	ID=2322;Type=deletion;Left=chr9:33203182-33203677+;Right=chr9:33204041-33204208+;Distance=859;DiscordantMatePairAlignments=16;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66854519 (chr9:33203052-33203911);Frequency=0.94
chr9	CG	SV	33203182	33203677	16	+	.	ID=2322;Type=deletion;Left=chr9:33203182-33203677;Right=chr9:33204041-33204208
chr9	CG	SV	33204041	33204208	16	+	.	ID=2322;Type=deletion;Left=chr9:33203182-33203677;Right=chr9:33204041-33204208
chr9	CG	SV	34671051	34671976	11	.	.	ID=880;Type=tandem-duplication;Left=chr9:34671051-34671480-;Right=chr9:34671816-34671976-;Distance=496;DiscordantMatePairAlignments=11;LeftRepeat=MLT1A:LTR:MaLR;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	34671051	34671480	11	-	.	ID=880;Type=tandem-duplication;Left=chr9:34671051-34671480;Right=chr9:34671816-34671976
chr9	CG	SV	34671816	34671976	11	-	.	ID=880;Type=tandem-duplication;Left=chr9:34671051-34671480;Right=chr9:34671816-34671976
chr9	CG	SV	35970788	35972453	32	.	.	ID=2320;Type=deletion;Left=chr9:35970788-35971306+;Right=chr9:35971993-35972453+;Distance=1205;DiscordantMatePairAlignments=32;LeftRepeat=L3:LINE:CR1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr9	CG	SV	35970788	35971306	32	+	.	ID=2320;Type=deletion;Left=chr9:35970788-35971306;Right=chr9:35971993-35972453
chr9	CG	SV	35971993	35972453	32	+	.	ID=2320;Type=deletion;Left=chr9:35970788-35971306;Right=chr9:35971993-35972453
chr9	CG	SV	36352905	36354298	30	.	.	ID=2318;Type=deletion;Left=chr9:36352905-36353391+;Right=chr9:36354103-36354298+;Distance=1198;DiscordantMatePairAlignments=30;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=NM_022781;NM_194328;NM_194329;NM_194330;NM_194332;RightGenes=NM_022781;NM_194328;NM_194329;NM_194330;NM_194332;XRef=;Frequency=0.88
chr9	CG	SV	36352905	36353391	30	+	.	ID=2318;Type=deletion;Left=chr9:36352905-36353391;Right=chr9:36354103-36354298
chr9	CG	SV	36354103	36354298	30	+	.	ID=2318;Type=deletion;Left=chr9:36352905-36353391;Right=chr9:36354103-36354298
chr9	CG	SV	44010534	44010783	109	.	.	ID=878;Type=tandem-duplication;Left=chr9:44010534-44010660-;Right=chr9:44010678-44010783-;Distance=123;DiscordantMatePairAlignments=109;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=SegDup;Self chain;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	44010534	44010660	109	-	.	ID=878;Type=tandem-duplication;Left=chr9:44010534-44010660;Right=chr9:44010678-44010783
chr9	CG	SV	44010678	44010783	109	-	.	ID=878;Type=tandem-duplication;Left=chr9:44010534-44010660;Right=chr9:44010678-44010783
chr9	CG	SV	67912566	67914220	132	.	.	ID=2314;Type=deletion;Left=chr9:67912566-67913264+;Right=chr9:67913640-67914220+;Distance=1074;DiscordantMatePairAlignments=132;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	67912566	67913264	132	+	.	ID=2314;Type=deletion;Left=chr9:67912566-67913264;Right=chr9:67913640-67914220
chr9	CG	SV	67913640	67914220	132	+	.	ID=2314;Type=deletion;Left=chr9:67912566-67913264;Right=chr9:67913640-67914220
chr9	CG	SV	70927942	70933680	64	.	.	ID=2306;Type=deletion;Left=chr9:70927942-70928557+;Right=chr9:70933176-70933680+;Distance=5234;DiscordantMatePairAlignments=64;LeftRepeat=;RightRepeat=L1MB8:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs67209752 (chr9:70927942-70933176);Frequency=0.88
chr9	CG	SV	70927942	70928557	64	+	.	ID=2306;Type=deletion;Left=chr9:70927942-70928557;Right=chr9:70933176-70933680
chr9	CG	SV	70933176	70933680	64	+	.	ID=2306;Type=deletion;Left=chr9:70927942-70928557;Right=chr9:70933176-70933680
chr9	CG	SV	70994347	70995227	23	.	.	ID=2304;Type=deletion;Left=chr9:70994347-70994775+;Right=chr9:70994821-70995227+;Distance=474;DiscordantMatePairAlignments=23;LeftRepeat=FAM:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_004817;NM_201629;RightGenes=NM_004817;NM_201629;XRef=rs71843308 (chr9:70994347-70994821);Frequency=0.65
chr9	CG	SV	70994347	70994775	23	+	.	ID=2304;Type=deletion;Left=chr9:70994347-70994775;Right=chr9:70994821-70995227
chr9	CG	SV	70994821	70995227	23	+	.	ID=2304;Type=deletion;Left=chr9:70994347-70994775;Right=chr9:70994821-70995227
chr9	CG	SV	71085302	71086554	19	.	.	ID=2303;Type=deletion;Left=chr9:71085302-71085833+;Right=chr9:71086462-71086554+;Distance=1160;DiscordantMatePairAlignments=19;LeftRepeat=HAL1:LINE:L1;RightRepeat=HAL1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71953158 (chr9:71085307-71086467);Frequency=0.94
chr9	CG	SV	71085302	71085833	19	+	.	ID=2303;Type=deletion;Left=chr9:71085302-71085833;Right=chr9:71086462-71086554
chr9	CG	SV	71086462	71086554	19	+	.	ID=2303;Type=deletion;Left=chr9:71085302-71085833;Right=chr9:71086462-71086554
chr9	CG	SV	71487612	71488547	145	.	.	ID=875;Type=tandem-duplication;Left=chr9:71487612-71488065-;Right=chr9:71488055-71488547-;Distance=482;DiscordantMatePairAlignments=145;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	71487612	71488065	145	-	.	ID=875;Type=tandem-duplication;Left=chr9:71487612-71488065;Right=chr9:71488055-71488547
chr9	CG	SV	71488055	71488547	145	-	.	ID=875;Type=tandem-duplication;Left=chr9:71487612-71488065;Right=chr9:71488055-71488547
chr9	CG	SV	73446481	73450302	28	.	.	ID=2302;Type=deletion;Left=chr9:73446481-73446899+;Right=chr9:73449955-73450302+;Distance=3474;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=CT-rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	73446481	73446899	28	+	.	ID=2302;Type=deletion;Left=chr9:73446481-73446899;Right=chr9:73449955-73450302
chr9	CG	SV	73449955	73450302	28	+	.	ID=2302;Type=deletion;Left=chr9:73446481-73446899;Right=chr9:73449955-73450302
chr9	CG	SV	76087825	76088422	10	.	.	ID=261;Type=probable-inversion;Left=chr9:76087825-76087958-;Right=chr9:76088209-76088422+;Distance=251;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr9	CG	SV	76087825	76087958	10	-	.	ID=261;Type=probable-inversion;Left=chr9:76087825-76087958;Right=chr9:76088209-76088422
chr9	CG	SV	76088209	76088422	10	-	.	ID=261;Type=probable-inversion;Left=chr9:76087825-76087958;Right=chr9:76088209-76088422
chr9	CG	SV	78109381	78112240	58	.	.	ID=2298;Type=deletion;Left=chr9:78109381-78109829+;Right=chr9:78111908-78112240+;Distance=2527;DiscordantMatePairAlignments=58;LeftRepeat=MIRb:SINE:MIR;Tandem period 133;RightRepeat=MIRb:SINE:MIR;Tandem period 133;LeftGenes=;RightGenes=;XRef=rs71317213 (chr9:78109441-78111835);Frequency=0.88
chr9	CG	SV	78109381	78109829	58	+	.	ID=2298;Type=deletion;Left=chr9:78109381-78109829;Right=chr9:78111908-78112240
chr9	CG	SV	78111908	78112240	58	+	.	ID=2298;Type=deletion;Left=chr9:78109381-78109829;Right=chr9:78111908-78112240
chr9	CG	SV	83514183	83517074	130	.	.	ID=2294;Type=deletion;Left=chr9:83514183-83514441+;Right=chr9:83516761-83517074+;Distance=2578;DiscordantMatePairAlignments=130;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67720670 (chr9:83514168-83516746);Frequency=1.00
chr9	CG	SV	83514183	83514441	130	+	.	ID=2294;Type=deletion;Left=chr9:83514183-83514441;Right=chr9:83516761-83517074
chr9	CG	SV	83516761	83517074	130	+	.	ID=2294;Type=deletion;Left=chr9:83514183-83514441;Right=chr9:83516761-83517074
chr9	CG	SV	86325867	86326760	40	.	.	ID=3634;Type=probable-inversion;Left=chr9:86325867-86326319+;Right=chr9:86326566-86326760-;Distance=893;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	86325867	86326319	40	+	.	ID=3634;Type=probable-inversion;Left=chr9:86325867-86326319;Right=chr9:86326566-86326760
chr9	CG	SV	86326566	86326760	40	+	.	ID=3634;Type=probable-inversion;Left=chr9:86325867-86326319;Right=chr9:86326566-86326760
chr9	CG	SV	87663291	87666173	28	.	.	ID=2290;Type=deletion;Left=chr9:87663291-87663711+;Right=chr9:87665990-87666173+;Distance=2699;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	87663291	87663711	28	+	.	ID=2290;Type=deletion;Left=chr9:87663291-87663711;Right=chr9:87665990-87666173
chr9	CG	SV	87665990	87666173	28	+	.	ID=2290;Type=deletion;Left=chr9:87663291-87663711;Right=chr9:87665990-87666173
chr9	CG	SV	88344377	88345750	28	.	.	ID=3633;Type=complex;Left=chr9:88344377-88344815+;Right=chr9:88345663-88345750-;Distance=1373;DiscordantMatePairAlignments=28;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	88344377	88344815	28	+	.	ID=3633;Type=complex;Left=chr9:88344377-88344815;Right=chr9:88345663-88345750
chr9	CG	SV	88345663	88345750	28	+	.	ID=3633;Type=complex;Left=chr9:88344377-88344815;Right=chr9:88345663-88345750
chr9	CG	SV	88344377	88346077	54	.	.	ID=2289;Type=complex;Left=chr9:88344377-88344740+;Right=chr9:88345766-88346077+;Distance=1389;DiscordantMatePairAlignments=54;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	88344377	88344740	54	+	.	ID=2289;Type=complex;Left=chr9:88344377-88344740;Right=chr9:88345766-88346077
chr9	CG	SV	88345766	88346077	54	+	.	ID=2289;Type=complex;Left=chr9:88344377-88344740;Right=chr9:88345766-88346077
chr9	CG	SV	88345575	88346180	23	.	.	ID=259;Type=complex;Left=chr9:88345575-88345662-;Right=chr9:88345767-88346180+;Distance=105;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	88345575	88345662	23	-	.	ID=259;Type=complex;Left=chr9:88345575-88345662;Right=chr9:88345767-88346180
chr9	CG	SV	88345767	88346180	23	-	.	ID=259;Type=complex;Left=chr9:88345575-88345662;Right=chr9:88345767-88346180
chr9	CG	SV	88988922	88989713	10	.	.	ID=2288;Type=deletion;Left=chr9:88988922-88989439+;Right=chr9:88989236-88989713+;Distance=314;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=HAL1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71317220 (chr9:88988922-88989236);Frequency=1.00
chr9	CG	SV	88988922	88989439	10	+	.	ID=2288;Type=deletion;Left=chr9:88988922-88989439;Right=chr9:88989236-88989713
chr9	CG	SV	88989236	88989713	10	+	.	ID=2288;Type=deletion;Left=chr9:88988922-88989439;Right=chr9:88989236-88989713
chr9	CG	SV	89255403	89256455	17	.	.	ID=2287;Type=deletion;Left=chr9:89255403-89255843+;Right=chr9:89256194-89256455+;Distance=791;DiscordantMatePairAlignments=17;LeftRepeat=AluSg:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	89255403	89255843	17	+	.	ID=2287;Type=deletion;Left=chr9:89255403-89255843;Right=chr9:89256194-89256455
chr9	CG	SV	89256194	89256455	17	+	.	ID=2287;Type=deletion;Left=chr9:89255403-89255843;Right=chr9:89256194-89256455
chr9	CG	SV	90048816	90051573	36	.	.	ID=2286;Type=deletion;Left=chr9:90048816-90049156+;Right=chr9:90050796-90051573+;Distance=1980;DiscordantMatePairAlignments=36;LeftRepeat=;RightRepeat=MER21C:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs71317224 (chr9:90048816-90050796);Frequency=1.00
chr9	CG	SV	90048816	90049156	36	+	.	ID=2286;Type=deletion;Left=chr9:90048816-90049156;Right=chr9:90050796-90051573
chr9	CG	SV	90050796	90051573	36	+	.	ID=2286;Type=deletion;Left=chr9:90048816-90049156;Right=chr9:90050796-90051573
chr9	CG	SV	90728285	90729294	45	.	.	ID=2284;Type=deletion;Left=chr9:90728285-90728767+;Right=chr9:90728886-90729294+;Distance=601;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	90728285	90728767	45	+	.	ID=2284;Type=deletion;Left=chr9:90728285-90728767;Right=chr9:90728886-90729294
chr9	CG	SV	90728886	90729294	45	+	.	ID=2284;Type=deletion;Left=chr9:90728285-90728767;Right=chr9:90728886-90729294
chr9	CG	SV	93761060	93761763	49	.	.	ID=3632;Type=probable-inversion;Left=chr9:93761060-93761509+;Right=chr9:93761274-93761763-;Distance=703;DiscordantMatePairAlignments=49;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSp:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	93761060	93761509	49	+	.	ID=3632;Type=probable-inversion;Left=chr9:93761060-93761509;Right=chr9:93761274-93761763
chr9	CG	SV	93761274	93761763	49	+	.	ID=3632;Type=probable-inversion;Left=chr9:93761060-93761509;Right=chr9:93761274-93761763
chr9	CG	SV	95510176	95511716	93	.	.	ID=2282;Type=deletion;Left=chr9:95510176-95510626+;Right=chr9:95511286-95511716+;Distance=1110;DiscordantMatePairAlignments=93;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67273187 (chr9:95510176-95511286);Frequency=0.29
chr9	CG	SV	95510176	95510626	93	+	.	ID=2282;Type=deletion;Left=chr9:95510176-95510626;Right=chr9:95511286-95511716
chr9	CG	SV	95511286	95511716	93	+	.	ID=2282;Type=deletion;Left=chr9:95510176-95510626;Right=chr9:95511286-95511716
chr9	CG	SV	96502356	96505788	122	.	.	ID=2281;Type=deletion;Left=chr9:96502356-96502823+;Right=chr9:96505326-96505788+;Distance=2970;DiscordantMatePairAlignments=122;LeftRepeat=MLT1K:LTR:MaLR;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	96502356	96502823	122	+	.	ID=2281;Type=deletion;Left=chr9:96502356-96502823;Right=chr9:96505326-96505788
chr9	CG	SV	96505326	96505788	122	+	.	ID=2281;Type=deletion;Left=chr9:96502356-96502823;Right=chr9:96505326-96505788
chr9	CG	SV	99800896	99801744	11	.	.	ID=2276;Type=deletion;Left=chr9:99800896-99801360+;Right=chr9:99801226-99801744+;Distance=330;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_006401;RightGenes=NM_006401;XRef=rs67907015 (chr9:99800896-99801226);Frequency=0.88
chr9	CG	SV	99800896	99801360	11	+	.	ID=2276;Type=deletion;Left=chr9:99800896-99801360;Right=chr9:99801226-99801744
chr9	CG	SV	99801226	99801744	11	+	.	ID=2276;Type=deletion;Left=chr9:99800896-99801360;Right=chr9:99801226-99801744
chr9	CG	SV	100348869	100352004	57	.	.	ID=2275;Type=deletion;Left=chr9:100348869-100349287+;Right=chr9:100351490-100352004+;Distance=2621;DiscordantMatePairAlignments=57;LeftRepeat=;RightRepeat=;LeftGenes=NM_005458;RightGenes=NM_005458;XRef=rs71885665 (chr9:100348864-100351485);Frequency=0.82
chr9	CG	SV	100348869	100349287	57	+	.	ID=2275;Type=deletion;Left=chr9:100348869-100349287;Right=chr9:100351490-100352004
chr9	CG	SV	100351490	100352004	57	+	.	ID=2275;Type=deletion;Left=chr9:100348869-100349287;Right=chr9:100351490-100352004
chr9	CG	SV	103259520	103260743	132	.	.	ID=2273;Type=deletion;Left=chr9:103259520-103260006+;Right=chr9:103260203-103260743+;Distance=683;DiscordantMatePairAlignments=132;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr9	CG	SV	103259520	103260006	132	+	.	ID=2273;Type=deletion;Left=chr9:103259520-103260006;Right=chr9:103260203-103260743
chr9	CG	SV	103260203	103260743	132	+	.	ID=2273;Type=deletion;Left=chr9:103259520-103260006;Right=chr9:103260203-103260743
chr9	CG	SV	103483791	103485135	142	.	.	ID=2272;Type=deletion;Left=chr9:103483791-103484326+;Right=chr9:103484557-103485135+;Distance=766;DiscordantMatePairAlignments=142;LeftRepeat=;RightRepeat=;LeftGenes=NM_133445;RightGenes=NM_133445;XRef=rs66469119 (chr9:103483782-103484548);Frequency=1.00
chr9	CG	SV	103483791	103484326	142	+	.	ID=2272;Type=deletion;Left=chr9:103483791-103484326;Right=chr9:103484557-103485135
chr9	CG	SV	103484557	103485135	142	+	.	ID=2272;Type=deletion;Left=chr9:103483791-103484326;Right=chr9:103484557-103485135
chr9	CG	SV	104366472	104372817	21	.	.	ID=257;Type=probable-inversion;Left=chr9:104366472-104366817-;Right=chr9:104372384-104372817+;Distance=5567;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr9	CG	SV	104366472	104366817	21	-	.	ID=257;Type=probable-inversion;Left=chr9:104366472-104366817;Right=chr9:104372384-104372817
chr9	CG	SV	104372384	104372817	21	-	.	ID=257;Type=probable-inversion;Left=chr9:104366472-104366817;Right=chr9:104372384-104372817
chr9	CG	SV	106856124	106857542	25	.	.	ID=256;Type=distal-duplication;Left=chr9:106856124-106856456-;Right=chr9:106857169-106857542+;Distance=713;DiscordantMatePairAlignments=25;LeftRepeat=HUERS-P1:LTR:ERV1;Self chain;RightRepeat=LTR57-int:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr9	CG	SV	106856124	106856456	25	-	.	ID=256;Type=distal-duplication;Left=chr9:106856124-106856456;Right=chr9:106857169-106857542
chr9	CG	SV	106857169	106857542	25	-	.	ID=256;Type=distal-duplication;Left=chr9:106856124-106856456;Right=chr9:106857169-106857542
chr9	CG	SV	106856800	106857162	74	.	.	ID=3629;Type=distal-duplication;Left=chr9:106856800-106857132+;Right=chr9:106856777-106857162-;Distance=362;DiscordantMatePairAlignments=74;LeftRepeat=Self chain;RightRepeat=LTR57-int:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr9	CG	SV	106856800	106857132	74	+	.	ID=3629;Type=distal-duplication;Left=chr9:106856800-106857132;Right=chr9:106856777-106857162
chr9	CG	SV	106856777	106857162	74	+	.	ID=3629;Type=distal-duplication;Left=chr9:106856800-106857132;Right=chr9:106856777-106857162
chr9	CG	SV	108779320	108782348	106	.	.	ID=2270;Type=deletion;Left=chr9:108779320-108779853+;Right=chr9:108781879-108782348+;Distance=2559;DiscordantMatePairAlignments=106;LeftRepeat=;RightRepeat=;LeftGenes=NM_021224;RightGenes=NM_021224;XRef=;Frequency=0.00
chr9	CG	SV	108779320	108779853	106	+	.	ID=2270;Type=deletion;Left=chr9:108779320-108779853;Right=chr9:108781879-108782348
chr9	CG	SV	108781879	108782348	106	+	.	ID=2270;Type=deletion;Left=chr9:108779320-108779853;Right=chr9:108781879-108782348
chr9	CG	SV	109577352	109580722	44	.	.	ID=2269;Type=deletion;Left=chr9:109577352-109577945+;Right=chr9:109580427-109580722+;Distance=3075;DiscordantMatePairAlignments=44;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67559039 (chr9:109577341-109580416);Frequency=0.94
chr9	CG	SV	109577352	109577945	44	+	.	ID=2269;Type=deletion;Left=chr9:109577352-109577945;Right=chr9:109580427-109580722
chr9	CG	SV	109580427	109580722	44	+	.	ID=2269;Type=deletion;Left=chr9:109577352-109577945;Right=chr9:109580427-109580722
chr9	CG	SV	111325474	111326383	40	.	.	ID=872;Type=tandem-duplication;Left=chr9:111325474-111325666-;Right=chr9:111325837-111326383-;Distance=717;DiscordantMatePairAlignments=40;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr9	CG	SV	111325474	111325666	40	-	.	ID=872;Type=tandem-duplication;Left=chr9:111325474-111325666;Right=chr9:111325837-111326383
chr9	CG	SV	111325837	111326383	40	-	.	ID=872;Type=tandem-duplication;Left=chr9:111325474-111325666;Right=chr9:111325837-111326383
chr9	CG	SV	112516996	112520458	74	.	.	ID=2266;Type=deletion;Left=chr9:112516996-112517561+;Right=chr9:112519930-112520458+;Distance=2934;DiscordantMatePairAlignments=74;LeftRepeat=;RightRepeat=L1MEe:LINE:L1;LeftGenes=NM_001166280;NM_001166281;NM_005592;RightGenes=NM_001166280;NM_001166281;NM_005592;XRef=rs67007992 (chr9:112516996-112519930);Frequency=0.06
chr9	CG	SV	112516996	112517561	74	+	.	ID=2266;Type=deletion;Left=chr9:112516996-112517561;Right=chr9:112519930-112520458
chr9	CG	SV	112519930	112520458	74	+	.	ID=2266;Type=deletion;Left=chr9:112516996-112517561;Right=chr9:112519930-112520458
chr9	CG	SV	113786554	113787452	19	.	.	ID=2265;Type=deletion;Left=chr9:113786554-113786993+;Right=chr9:113786974-113787452+;Distance=420;DiscordantMatePairAlignments=19;LeftRepeat=MIR:SINE:MIR;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	113786554	113786993	19	+	.	ID=2265;Type=deletion;Left=chr9:113786554-113786993;Right=chr9:113786974-113787452
chr9	CG	SV	113786974	113787452	19	+	.	ID=2265;Type=deletion;Left=chr9:113786554-113786993;Right=chr9:113786974-113787452
chr9	CG	SV	118516898	118517754	24	.	.	ID=2263;Type=deletion;Left=chr9:118516898-118517313+;Right=chr9:118517232-118517754+;Distance=334;DiscordantMatePairAlignments=24;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_014010;NM_198186;NM_198187;RightGenes=NM_014010;NM_198186;NM_198187;XRef=rs72440176 (chr9:118516898-118517232);Frequency=0.94
chr9	CG	SV	118516898	118517313	24	+	.	ID=2263;Type=deletion;Left=chr9:118516898-118517313;Right=chr9:118517232-118517754
chr9	CG	SV	118517232	118517754	24	+	.	ID=2263;Type=deletion;Left=chr9:118516898-118517313;Right=chr9:118517232-118517754
chr9	CG	SV	127542380	127544062	37	.	.	ID=2260;Type=deletion;Left=chr9:127542380-127542842+;Right=chr9:127543673-127544062+;Distance=1293;DiscordantMatePairAlignments=37;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	127542380	127542842	37	+	.	ID=2260;Type=deletion;Left=chr9:127542380-127542842;Right=chr9:127543673-127544062
chr9	CG	SV	127543673	127544062	37	+	.	ID=2260;Type=deletion;Left=chr9:127542380-127542842;Right=chr9:127543673-127544062
chr9	CG	SV	131568857	131569175	12	+	.	ID=1796;Type=interchromosomal;Left=chr9:131568857-131569175+;Right=chr17:42568841-42569001+;Distance=;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=NM_001114091;NM_001256;XRef=;Frequency=0.00
chr17	CG	SV	42568841	42569001	12	+	.	ID=1796;Type=interchromosomal;Left=chr9:131568857-131569175+;Right=chr17:42568841-42569001+;Distance=;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=NM_001114091;NM_001256;XRef=;Frequency=0.00
chr9	CG	SV	135369043	135369885	10	.	.	ID=2258;Type=deletion;Left=chr9:135369043-135369519+;Right=chr9:135369385-135369885+;Distance=342;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs36107150 (chr9:135369043-135369385);Frequency=1.00
chr9	CG	SV	135369043	135369519	10	+	.	ID=2258;Type=deletion;Left=chr9:135369043-135369519;Right=chr9:135369385-135369885
chr9	CG	SV	135369385	135369885	10	+	.	ID=2258;Type=deletion;Left=chr9:135369043-135369519;Right=chr9:135369385-135369885
chr9	CG	SV	135403937	135404759	12	.	.	ID=2257;Type=deletion;Left=chr9:135403937-135404445+;Right=chr9:135404261-135404759+;Distance=324;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=ERVL-E:LTR:ERVL;LeftGenes=NM_001145320;NM_014694;RightGenes=NM_001145320;NM_014694;XRef=rs67544107 (chr9:135403937-135404261);Frequency=1.00
chr9	CG	SV	135403937	135404445	12	+	.	ID=2257;Type=deletion;Left=chr9:135403937-135404445;Right=chr9:135404261-135404759
chr9	CG	SV	135404261	135404759	12	+	.	ID=2257;Type=deletion;Left=chr9:135403937-135404445;Right=chr9:135404261-135404759
chr9	CG	SV	135682240	135683694	13	.	.	ID=2255;Type=deletion;Left=chr9:135682240-135682537+;Right=chr9:135683440-135683694+;Distance=1200;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 48;Tandem period 96;RightRepeat=Self chain;LeftGenes=NM_001134398;NM_003371;RightGenes=NM_001134398;NM_003371;XRef=;Frequency=0.53
chr9	CG	SV	135682240	135682537	13	+	.	ID=2255;Type=deletion;Left=chr9:135682240-135682537;Right=chr9:135683440-135683694
chr9	CG	SV	135683440	135683694	13	+	.	ID=2255;Type=deletion;Left=chr9:135682240-135682537;Right=chr9:135683440-135683694
chr9	CG	SV	137353887	137358072	260	.	.	ID=2254;Type=deletion;Left=chr9:137353887-137354443+;Right=chr9:137357427-137358072+;Distance=3540;DiscordantMatePairAlignments=260;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67671245 (chr9:137353887-137357427);Frequency=0.82
chr9	CG	SV	137353887	137354443	260	+	.	ID=2254;Type=deletion;Left=chr9:137353887-137354443;Right=chr9:137357427-137358072
chr9	CG	SV	137357427	137358072	260	+	.	ID=2254;Type=deletion;Left=chr9:137353887-137354443;Right=chr9:137357427-137358072
chr9	CG	SV	137618924	137620441	146	.	.	ID=2253;Type=deletion;Left=chr9:137618924-137619467+;Right=chr9:137620023-137620441+;Distance=1099;DiscordantMatePairAlignments=146;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66693528 (chr9:137618924-137620023);Frequency=0.94
chr9	CG	SV	137618924	137619467	146	+	.	ID=2253;Type=deletion;Left=chr9:137618924-137619467;Right=chr9:137620023-137620441
chr9	CG	SV	137620023	137620441	146	+	.	ID=2253;Type=deletion;Left=chr9:137618924-137619467;Right=chr9:137620023-137620441
chr9	CG	SV	139683327	139683852	10	.	.	ID=867;Type=tandem-duplication;Left=chr9:139683327-139683587-;Right=chr9:139683705-139683852-;Distance=265;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 37;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_001145527;NM_024757;RightGenes=NM_001145527;NM_024757;XRef=;Frequency=0.88
chr9	CG	SV	139683327	139683587	10	-	.	ID=867;Type=tandem-duplication;Left=chr9:139683327-139683587;Right=chr9:139683705-139683852
chr9	CG	SV	139683705	139683852	10	-	.	ID=867;Type=tandem-duplication;Left=chr9:139683327-139683587;Right=chr9:139683705-139683852
chr9	CG	SV	139832885	139834316	83	.	.	ID=2251;Type=deletion;Left=chr9:139832885-139833379+;Right=chr9:139833950-139834316+;Distance=1065;DiscordantMatePairAlignments=83;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;Tandem period 38;LeftGenes=NM_024757;RightGenes=NM_024757;XRef=rs72199070 (chr9:139832753-139833816);Frequency=0.12
chr9	CG	SV	139832885	139833379	83	+	.	ID=2251;Type=deletion;Left=chr9:139832885-139833379;Right=chr9:139833950-139834316
chr9	CG	SV	139833950	139834316	83	+	.	ID=2251;Type=deletion;Left=chr9:139832885-139833379;Right=chr9:139833950-139834316
chr10	CG	SV	5191886	5314899	22	.	.	ID=865;Type=tandem-duplication;Left=chr10:5191886-5192142-;Right=chr10:5314769-5314899-;Distance=122757;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_027916;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	5191886	5192142	22	-	.	ID=865;Type=tandem-duplication;Left=chr10:5191886-5192142;Right=chr10:5314769-5314899
chr10	CG	SV	5314769	5314899	22	-	.	ID=865;Type=tandem-duplication;Left=chr10:5191886-5192142;Right=chr10:5314769-5314899
chr10	CG	SV	5627102	5677603	184	.	.	ID=2241;Type=deletion;Left=chr10:5627102-5627641+;Right=chr10:5677120-5677603+;Distance=50018;DiscordantMatePairAlignments=184;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	5627102	5627641	184	+	.	ID=2241;Type=deletion;Left=chr10:5627102-5627641;Right=chr10:5677120-5677603
chr10	CG	SV	5677120	5677603	184	+	.	ID=2241;Type=deletion;Left=chr10:5627102-5627641;Right=chr10:5677120-5677603
chr10	CG	SV	6451575	6458089	166	.	.	ID=2239;Type=deletion;Left=chr10:6451575-6452104+;Right=chr10:6457641-6458089+;Distance=6066;DiscordantMatePairAlignments=166;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71389924 (chr10:6451586-6457652);Frequency=0.94
chr10	CG	SV	6451575	6452104	166	+	.	ID=2239;Type=deletion;Left=chr10:6451575-6452104;Right=chr10:6457641-6458089
chr10	CG	SV	6457641	6458089	166	+	.	ID=2239;Type=deletion;Left=chr10:6451575-6452104;Right=chr10:6457641-6458089
chr10	CG	SV	11803421	11804198	60	.	.	ID=864;Type=tandem-duplication;Left=chr10:11803421-11803787-;Right=chr10:11803909-11804198-;Distance=411;DiscordantMatePairAlignments=60;LeftRepeat=AluJo:SINE:Alu;RightRepeat=MLT2B1:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	11803421	11803787	60	-	.	ID=864;Type=tandem-duplication;Left=chr10:11803421-11803787;Right=chr10:11803909-11804198
chr10	CG	SV	11803909	11804198	60	-	.	ID=864;Type=tandem-duplication;Left=chr10:11803421-11803787;Right=chr10:11803909-11804198
chr10	CG	SV	12600479	12603476	77	.	.	ID=2236;Type=deletion;Left=chr10:12600479-12600971+;Right=chr10:12602993-12603476+;Distance=2514;DiscordantMatePairAlignments=77;LeftRepeat=Tandem period 7;RightRepeat=L1MD2:LINE:L1;LeftGenes=NM_020397;NM_153498;RightGenes=NM_020397;NM_153498;XRef=rs71389930 (chr10:12600479-12602993);Frequency=0.41
chr10	CG	SV	12600479	12600971	77	+	.	ID=2236;Type=deletion;Left=chr10:12600479-12600971;Right=chr10:12602993-12603476
chr10	CG	SV	12602993	12603476	77	+	.	ID=2236;Type=deletion;Left=chr10:12600479-12600971;Right=chr10:12602993-12603476
chr10	CG	SV	23055569	23057201	73	.	.	ID=2235;Type=deletion;Left=chr10:23055569-23056081+;Right=chr10:23056762-23057201+;Distance=1193;DiscordantMatePairAlignments=73;LeftRepeat=L2:LINE:L2;RightRepeat=MLT1K:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	23055569	23056081	73	+	.	ID=2235;Type=deletion;Left=chr10:23055569-23056081;Right=chr10:23056762-23057201
chr10	CG	SV	23056762	23057201	73	+	.	ID=2235;Type=deletion;Left=chr10:23055569-23056081;Right=chr10:23056762-23057201
chr10	CG	SV	25678295	25679192	56	.	.	ID=2233;Type=deletion;Left=chr10:25678295-25678768+;Right=chr10:25678842-25679192+;Distance=547;DiscordantMatePairAlignments=56;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=;LeftGenes=NM_020752;RightGenes=NM_020752;XRef=rs72053357 (chr10:25678295-25678842);Frequency=0.00
chr10	CG	SV	25678295	25678768	56	+	.	ID=2233;Type=deletion;Left=chr10:25678295-25678768;Right=chr10:25678842-25679192
chr10	CG	SV	25678842	25679192	56	+	.	ID=2233;Type=deletion;Left=chr10:25678295-25678768;Right=chr10:25678842-25679192
chr10	CG	SV	27039081	27042502	29	.	.	ID=2232;Type=deletion;Left=chr10:27039081-27039660+;Right=chr10:27042219-27042502+;Distance=3138;DiscordantMatePairAlignments=29;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_014317;RightGenes=NM_014317;XRef=rs67040591 (chr10:27038982-27042120);Frequency=0.88
chr10	CG	SV	27039081	27039660	29	+	.	ID=2232;Type=deletion;Left=chr10:27039081-27039660;Right=chr10:27042219-27042502
chr10	CG	SV	27042219	27042502	29	+	.	ID=2232;Type=deletion;Left=chr10:27039081-27039660;Right=chr10:27042219-27042502
chr10	CG	SV	29752160	29753131	54	.	.	ID=2230;Type=deletion;Left=chr10:29752160-29752714+;Right=chr10:29752735-29753131+;Distance=575;DiscordantMatePairAlignments=54;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs68003608 (chr10:29752151-29752726);Frequency=0.71
chr10	CG	SV	29752160	29752714	54	+	.	ID=2230;Type=deletion;Left=chr10:29752160-29752714;Right=chr10:29752735-29753131
chr10	CG	SV	29752735	29753131	54	+	.	ID=2230;Type=deletion;Left=chr10:29752160-29752714;Right=chr10:29752735-29753131
chr10	CG	SV	29782251	29783469	12	.	.	ID=2229;Type=deletion;Left=chr10:29782251-29782655+;Right=chr10:29782974-29783469+;Distance=723;DiscordantMatePairAlignments=12;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72391656 (chr10:29782249-29782972);Frequency=0.29
chr10	CG	SV	29782251	29782655	12	+	.	ID=2229;Type=deletion;Left=chr10:29782251-29782655;Right=chr10:29782974-29783469
chr10	CG	SV	29782974	29783469	12	+	.	ID=2229;Type=deletion;Left=chr10:29782251-29782655;Right=chr10:29782974-29783469
chr10	CG	SV	32297897	32301060	48	.	.	ID=2228;Type=deletion;Left=chr10:32297897-32298277+;Right=chr10:32300629-32301060+;Distance=2732;DiscordantMatePairAlignments=48;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72294841 (chr10:32297901-32300633);Frequency=0.88
chr10	CG	SV	32297897	32298277	48	+	.	ID=2228;Type=deletion;Left=chr10:32297897-32298277;Right=chr10:32300629-32301060
chr10	CG	SV	32300629	32301060	48	+	.	ID=2228;Type=deletion;Left=chr10:32297897-32298277;Right=chr10:32300629-32301060
chr10	CG	SV	35699359	35700212	24	.	.	ID=2225;Type=deletion;Left=chr10:35699359-35699943+;Right=chr10:35699923-35700212+;Distance=564;DiscordantMatePairAlignments=24;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_145012;NM_181698;RightGenes=NM_145012;NM_181698;XRef=;Frequency=0.00
chr10	CG	SV	35699359	35699943	24	+	.	ID=2225;Type=deletion;Left=chr10:35699359-35699943;Right=chr10:35699923-35700212
chr10	CG	SV	35699923	35700212	24	+	.	ID=2225;Type=deletion;Left=chr10:35699359-35699943;Right=chr10:35699923-35700212
chr10	CG	SV	37856569	37863889	37	.	.	ID=2224;Type=deletion;Left=chr10:37856569-37856922+;Right=chr10:37863517-37863889+;Distance=6948;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	37856569	37856922	37	+	.	ID=2224;Type=deletion;Left=chr10:37856569-37856922;Right=chr10:37863517-37863889
chr10	CG	SV	37863517	37863889	37	+	.	ID=2224;Type=deletion;Left=chr10:37856569-37856922;Right=chr10:37863517-37863889
chr10	CG	SV	44742660	44744137	42	.	.	ID=849;Type=distal-duplication;Left=chr10:44742660-44742947-;Right=chr10:44743699-44744137-;Distance=1190;DiscordantMatePairAlignments=42;LeftRepeat=;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Tandem CATC;Tandem period 16;LeftGenes=NM_001123376;RightGenes=NM_001123376;XRef=;Frequency=0.18
chr10	CG	SV	44742660	44742947	42	-	.	ID=849;Type=distal-duplication;Left=chr10:44742660-44742947;Right=chr10:44743699-44744137
chr10	CG	SV	44743699	44744137	42	-	.	ID=849;Type=distal-duplication;Left=chr10:44742660-44742947;Right=chr10:44743699-44744137
chr10	CG	SV	44743233	44744582	57	.	.	ID=2212;Type=distal-duplication;Left=chr10:44743233-44743521+;Right=chr10:44744156-44744582+;Distance=923;DiscordantMatePairAlignments=57;LeftRepeat=;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Tandem CATC;Tandem period 16;LeftGenes=NM_001123376;RightGenes=NM_001123376;XRef=;Frequency=0.18
chr10	CG	SV	44743233	44743521	57	+	.	ID=2212;Type=distal-duplication;Left=chr10:44743233-44743521;Right=chr10:44744156-44744582
chr10	CG	SV	44744156	44744582	57	+	.	ID=2212;Type=distal-duplication;Left=chr10:44743233-44743521;Right=chr10:44744156-44744582
chr10	CG	SV	46442693	46479906	41	.	.	ID=244;Type=probable-inversion;Left=chr10:46442693-46443089-;Right=chr10:46479538-46479906+;Distance=36449;DiscordantMatePairAlignments=41;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TG;Tandem period 9;RightRepeat=(CA)n:Simple_repeat:Simple_repeat;Self chain;Tandem CA;Tandem period 19;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	46442693	46443089	41	-	.	ID=244;Type=probable-inversion;Left=chr10:46442693-46443089;Right=chr10:46479538-46479906
chr10	CG	SV	46479538	46479906	41	-	.	ID=244;Type=probable-inversion;Left=chr10:46442693-46443089;Right=chr10:46479538-46479906
chr10	CG	SV	46508391	46509383	11	.	.	ID=2210;Type=deletion;Left=chr10:46508391-46508770+;Right=chr10:46508719-46509383+;Distance=328;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10705841 (chr10:46508391-46508719);Frequency=0.00
chr10	CG	SV	46508391	46508770	11	+	.	ID=2210;Type=deletion;Left=chr10:46508391-46508770;Right=chr10:46508719-46509383
chr10	CG	SV	46508719	46509383	11	+	.	ID=2210;Type=deletion;Left=chr10:46508391-46508770;Right=chr10:46508719-46509383
chr10	CG	SV	47112653	47113515	29	.	.	ID=2209;Type=deletion;Left=chr10:47112653-47113048+;Right=chr10:47113182-47113515+;Distance=529;DiscordantMatePairAlignments=29;LeftRepeat=(CCCTAA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem CTAACT;RightRepeat=(CCCTAA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem CTAACT;LeftGenes=;RightGenes=;XRef=rs71702761 (chr10:47112617-47113103);Frequency=1.00
chr10	CG	SV	47112653	47113048	29	+	.	ID=2209;Type=deletion;Left=chr10:47112653-47113048;Right=chr10:47113182-47113515
chr10	CG	SV	47113182	47113515	29	+	.	ID=2209;Type=deletion;Left=chr10:47112653-47113048;Right=chr10:47113182-47113515
chr10	CG	SV	49867974	49877617	95	.	.	ID=2206;Type=deletion;Left=chr10:49867974-49868376+;Right=chr10:49877193-49877617+;Distance=9219;DiscordantMatePairAlignments=95;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	49867974	49868376	95	+	.	ID=2206;Type=deletion;Left=chr10:49867974-49868376;Right=chr10:49877193-49877617
chr10	CG	SV	49877193	49877617	95	+	.	ID=2206;Type=deletion;Left=chr10:49867974-49868376;Right=chr10:49877193-49877617
chr10	CG	SV	54111215	54111805	11	.	.	ID=2204;Type=deletion;Left=chr10:54111215-54111879+;Right=chr10:54111532-54111805+;Distance=317;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	54111215	54111879	11	+	.	ID=2204;Type=deletion;Left=chr10:54111215-54111879;Right=chr10:54111532-54111805
chr10	CG	SV	54111532	54111805	11	+	.	ID=2204;Type=deletion;Left=chr10:54111215-54111879;Right=chr10:54111532-54111805
chr10	CG	SV	56352786	56354812	23	.	.	ID=2201;Type=deletion;Left=chr10:56352786-56353133+;Right=chr10:56354366-56354812+;Distance=1580;DiscordantMatePairAlignments=23;LeftRepeat=MSTA-int:LTR:MaLR;Self chain;RightRepeat=L1PA13:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr10	CG	SV	56352786	56353133	23	+	.	ID=2201;Type=deletion;Left=chr10:56352786-56353133;Right=chr10:56354366-56354812
chr10	CG	SV	56354366	56354812	23	+	.	ID=2201;Type=deletion;Left=chr10:56352786-56353133;Right=chr10:56354366-56354812
chr10	CG	SV	58879793	58882351	61	.	.	ID=2199;Type=deletion;Left=chr10:58879793-58880190+;Right=chr10:58881859-58882351+;Distance=2066;DiscordantMatePairAlignments=61;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72449988 (chr10:58879793-58881845);Frequency=0.53
chr10	CG	SV	58879793	58880190	61	+	.	ID=2199;Type=deletion;Left=chr10:58879793-58880190;Right=chr10:58881859-58882351
chr10	CG	SV	58881859	58882351	61	+	.	ID=2199;Type=deletion;Left=chr10:58879793-58880190;Right=chr10:58881859-58882351
chr10	CG	SV	58927384	58928382	33	.	.	ID=243;Type=probable-inversion;Left=chr10:58927384-58927664-;Right=chr10:58927992-58928382+;Distance=328;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;RightRepeat=MIRb:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr10	CG	SV	58927384	58927664	33	-	.	ID=243;Type=probable-inversion;Left=chr10:58927384-58927664;Right=chr10:58927992-58928382
chr10	CG	SV	58927992	58928382	33	-	.	ID=243;Type=probable-inversion;Left=chr10:58927384-58927664;Right=chr10:58927992-58928382
chr10	CG	SV	65895959	65897358	84	.	.	ID=2198;Type=deletion;Left=chr10:65895959-65896400+;Right=chr10:65896740-65897358+;Distance=781;DiscordantMatePairAlignments=84;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72048155 (chr10:65895959-65896740);Frequency=0.00
chr10	CG	SV	65895959	65896400	84	+	.	ID=2198;Type=deletion;Left=chr10:65895959-65896400;Right=chr10:65896740-65897358
chr10	CG	SV	65896740	65897358	84	+	.	ID=2198;Type=deletion;Left=chr10:65895959-65896400;Right=chr10:65896740-65897358
chr10	CG	SV	66068780	66071244	33	.	.	ID=2197;Type=deletion;Left=chr10:66068780-66069216+;Right=chr10:66070754-66071244+;Distance=1974;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;RightRepeat=L4:LINE:RTE;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr10	CG	SV	66068780	66069216	33	+	.	ID=2197;Type=deletion;Left=chr10:66068780-66069216;Right=chr10:66070754-66071244
chr10	CG	SV	66070754	66071244	33	+	.	ID=2197;Type=deletion;Left=chr10:66068780-66069216;Right=chr10:66070754-66071244
chr10	CG	SV	66894818	66904074	60	.	.	ID=242;Type=probable-inversion;Left=chr10:66894818-66895209-;Right=chr10:66903673-66904074+;Distance=8464;DiscordantMatePairAlignments=60;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	66894818	66895209	60	-	.	ID=242;Type=probable-inversion;Left=chr10:66894818-66895209;Right=chr10:66903673-66904074
chr10	CG	SV	66903673	66904074	60	-	.	ID=242;Type=probable-inversion;Left=chr10:66894818-66895209;Right=chr10:66903673-66904074
chr10	CG	SV	67098537	67099231	12	.	.	ID=241;Type=probable-inversion;Left=chr10:67098537-67098629-;Right=chr10:67098743-67099231+;Distance=114;DiscordantMatePairAlignments=12;LeftRepeat=MER87:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	67098537	67098629	12	-	.	ID=241;Type=probable-inversion;Left=chr10:67098537-67098629;Right=chr10:67098743-67099231
chr10	CG	SV	67098743	67099231	12	-	.	ID=241;Type=probable-inversion;Left=chr10:67098537-67098629;Right=chr10:67098743-67099231
chr10	CG	SV	80762188	80763024	86	.	.	ID=2192;Type=deletion;Left=chr10:80762188-80762800+;Right=chr10:80762786-80763024+;Distance=598;DiscordantMatePairAlignments=86;LeftRepeat=Self chain;RightRepeat=L1ME3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr10	CG	SV	80762188	80762800	86	+	.	ID=2192;Type=deletion;Left=chr10:80762188-80762800;Right=chr10:80762786-80763024
chr10	CG	SV	80762786	80763024	86	+	.	ID=2192;Type=deletion;Left=chr10:80762188-80762800;Right=chr10:80762786-80763024
chr10	CG	SV	84117799	84120797	19	.	.	ID=2190;Type=deletion;Left=chr10:84117799-84118252+;Right=chr10:84120349-84120797+;Distance=2550;DiscordantMatePairAlignments=19;LeftRepeat=MIR:SINE:MIR;Self chain;RightRepeat=LTR1B:LTR:ERV1;Self chain;LeftGenes=NM_001010848;NM_001165972;NM_001165973;RightGenes=NM_001010848;NM_001165972;NM_001165973;XRef=;Frequency=0.12
chr10	CG	SV	84117799	84118252	19	+	.	ID=2190;Type=deletion;Left=chr10:84117799-84118252;Right=chr10:84120349-84120797
chr10	CG	SV	84120349	84120797	19	+	.	ID=2190;Type=deletion;Left=chr10:84117799-84118252;Right=chr10:84120349-84120797
chr10	CG	SV	84227969	84229015	39	.	.	ID=2189;Type=deletion;Left=chr10:84227969-84228444+;Right=chr10:84228462-84229015+;Distance=493;DiscordantMatePairAlignments=39;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_001010848;NM_001165972;NM_001165973;RightGenes=NM_001010848;NM_001165972;NM_001165973;XRef=rs66512026 (chr10:84227952-84228445);Frequency=0.82
chr10	CG	SV	84227969	84228444	39	+	.	ID=2189;Type=deletion;Left=chr10:84227969-84228444;Right=chr10:84228462-84229015
chr10	CG	SV	84228462	84229015	39	+	.	ID=2189;Type=deletion;Left=chr10:84227969-84228444;Right=chr10:84228462-84229015
chr10	CG	SV	88656173	88656952	10	.	.	ID=2188;Type=deletion;Left=chr10:88656173-88656654+;Right=chr10:88656513-88656952+;Distance=340;DiscordantMatePairAlignments=10;LeftRepeat=L1MCa:LINE:L1;Self chain;RightRepeat=L1MCa:LINE:L1;Self chain;LeftGenes=NM_004329;RightGenes=NM_004329;XRef=;Frequency=0.59
chr10	CG	SV	88656173	88656654	10	+	.	ID=2188;Type=deletion;Left=chr10:88656173-88656654;Right=chr10:88656513-88656952
chr10	CG	SV	88656513	88656952	10	+	.	ID=2188;Type=deletion;Left=chr10:88656173-88656654;Right=chr10:88656513-88656952
chr10	CG	SV	89608401	89610117	56	.	.	ID=2187;Type=deletion;Left=chr10:89608401-89608786+;Right=chr10:89609759-89610117+;Distance=1358;DiscordantMatePairAlignments=56;LeftRepeat=AluSg/x:SINE:Alu;Tandem A;RightRepeat=AluSc:SINE:Alu;Tandem A;LeftGenes=;RightGenes=NM_001126049;XRef=;Frequency=0.00
chr10	CG	SV	89608401	89608786	56	+	.	ID=2187;Type=deletion;Left=chr10:89608401-89608786;Right=chr10:89609759-89610117
chr10	CG	SV	89609759	89610117	56	+	.	ID=2187;Type=deletion;Left=chr10:89608401-89608786;Right=chr10:89609759-89610117
chr10	CG	SV	93623318	93624955	65	.	.	ID=2185;Type=deletion;Left=chr10:93623318-93623766+;Right=chr10:93624545-93624955+;Distance=1227;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr10	CG	SV	93623318	93623766	65	+	.	ID=2185;Type=deletion;Left=chr10:93623318-93623766;Right=chr10:93624545-93624955
chr10	CG	SV	93624545	93624955	65	+	.	ID=2185;Type=deletion;Left=chr10:93623318-93623766;Right=chr10:93624545-93624955
chr10	CG	SV	94124579	94127967	29	.	.	ID=2184;Type=deletion;Left=chr10:94124579-94125088+;Right=chr10:94127633-94127967+;Distance=3054;DiscordantMatePairAlignments=29;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=rs66665405 (chr10:94124594-94127633);Frequency=1.00
chr10	CG	SV	94124579	94125088	29	+	.	ID=2184;Type=deletion;Left=chr10:94124579-94125088;Right=chr10:94127633-94127967
chr10	CG	SV	94127633	94127967	29	+	.	ID=2184;Type=deletion;Left=chr10:94124579-94125088;Right=chr10:94127633-94127967
chr10	CG	SV	97197045	97198453	27	.	.	ID=2182;Type=deletion;Left=chr10:97197045-97197250+;Right=chr10:97198018-97198453+;Distance=973;DiscordantMatePairAlignments=27;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=NM_015385;NM_024991;RightGenes=NM_015385;NM_024991;XRef=rs71977870 (chr10:97197044-97198017);Frequency=0.76
chr10	CG	SV	97197045	97197250	27	+	.	ID=2182;Type=deletion;Left=chr10:97197045-97197250;Right=chr10:97198018-97198453
chr10	CG	SV	97198018	97198453	27	+	.	ID=2182;Type=deletion;Left=chr10:97197045-97197250;Right=chr10:97198018-97198453
chr10	CG	SV	99024863	99027799	95	.	.	ID=2181;Type=deletion;Left=chr10:99024863-99025315+;Right=chr10:99027397-99027799+;Distance=2534;DiscordantMatePairAlignments=95;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=NM_032900;RightGenes=NM_032900;XRef=rs67926115 (chr10:99024863-99027397);Frequency=1.00
chr10	CG	SV	99024863	99025315	95	+	.	ID=2181;Type=deletion;Left=chr10:99024863-99025315;Right=chr10:99027397-99027799
chr10	CG	SV	99027397	99027799	95	+	.	ID=2181;Type=deletion;Left=chr10:99024863-99025315;Right=chr10:99027397-99027799
chr10	CG	SV	100015126	100016005	13	.	.	ID=2180;Type=deletion;Left=chr10:100015126-100015714+;Right=chr10:100015461-100016005+;Distance=335;DiscordantMatePairAlignments=13;LeftRepeat=(TTA)n:Simple_repeat:Simple_repeat;Tandem TAT;RightRepeat=;LeftGenes=NM_032211;RightGenes=NM_032211;XRef=rs67771483 (chr10:100015108-100015443);Frequency=0.65
chr10	CG	SV	100015126	100015714	13	+	.	ID=2180;Type=deletion;Left=chr10:100015126-100015714;Right=chr10:100015461-100016005
chr10	CG	SV	100015461	100016005	13	+	.	ID=2180;Type=deletion;Left=chr10:100015126-100015714;Right=chr10:100015461-100016005
chr10	CG	SV	101411713	101438838	59	.	.	ID=2179;Type=deletion;Left=chr10:101411713-101412223+;Right=chr10:101438198-101438838+;Distance=26485;DiscordantMatePairAlignments=59;LeftRepeat=L1MEc:LINE:L1;RightRepeat=;LeftGenes=NM_020354;RightGenes=NM_020354;XRef=;Frequency=0.00
chr10	CG	SV	101411713	101412223	59	+	.	ID=2179;Type=deletion;Left=chr10:101411713-101412223;Right=chr10:101438198-101438838
chr10	CG	SV	101438198	101438838	59	+	.	ID=2179;Type=deletion;Left=chr10:101411713-101412223;Right=chr10:101438198-101438838
chr10	CG	SV	111562114	111568611	61	.	.	ID=2177;Type=deletion;Left=chr10:111562114-111562724+;Right=chr10:111568220-111568611+;Distance=6106;DiscordantMatePairAlignments=61;LeftRepeat=L1HS:LINE:L1;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66614434 (chr10:111562100-111568206);Frequency=1.00
chr10	CG	SV	111562114	111562724	61	+	.	ID=2177;Type=deletion;Left=chr10:111562114-111562724;Right=chr10:111568220-111568611
chr10	CG	SV	111568220	111568611	61	+	.	ID=2177;Type=deletion;Left=chr10:111562114-111562724;Right=chr10:111568220-111568611
chr10	CG	SV	114102173	114107111	62	.	.	ID=2176;Type=deletion;Left=chr10:114102173-114102697+;Right=chr10:114106650-114107111+;Distance=4477;DiscordantMatePairAlignments=62;LeftRepeat=AluSx:SINE:Alu;RightRepeat=MIRm:SINE:MIR;LeftGenes=NR_028134;RightGenes=;XRef=rs71683790 (chr10:114102173-114106650);Frequency=0.88
chr10	CG	SV	114102173	114102697	62	+	.	ID=2176;Type=deletion;Left=chr10:114102173-114102697;Right=chr10:114106650-114107111
chr10	CG	SV	114106650	114107111	62	+	.	ID=2176;Type=deletion;Left=chr10:114102173-114102697;Right=chr10:114106650-114107111
chr10	CG	SV	116260059	116262066	46	.	.	ID=2173;Type=deletion;Left=chr10:116260059-116260462+;Right=chr10:116261561-116262066+;Distance=1502;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=;LeftGenes=NM_001003407;NM_001003408;NM_002313;NM_006720;RightGenes=NM_001003407;NM_001003408;NM_002313;NM_006720;XRef=;Frequency=0.00
chr10	CG	SV	116260059	116260462	46	+	.	ID=2173;Type=deletion;Left=chr10:116260059-116260462;Right=chr10:116261561-116262066
chr10	CG	SV	116261561	116262066	46	+	.	ID=2173;Type=deletion;Left=chr10:116260059-116260462;Right=chr10:116261561-116262066
chr10	CG	SV	119624273	119625147	10	.	.	ID=2171;Type=deletion;Left=chr10:119624273-119624704+;Right=chr10:119624604-119625147+;Distance=331;DiscordantMatePairAlignments=10;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71389988 (chr10:119624273-119624604);Frequency=1.00
chr10	CG	SV	119624273	119624704	10	+	.	ID=2171;Type=deletion;Left=chr10:119624273-119624704;Right=chr10:119624604-119625147
chr10	CG	SV	119624604	119625147	10	+	.	ID=2171;Type=deletion;Left=chr10:119624273-119624704;Right=chr10:119624604-119625147
chr10	CG	SV	127360085	127360720	31	.	.	ID=843;Type=tandem-duplication;Left=chr10:127360085-127360382-;Right=chr10:127360446-127360720-;Distance=338;DiscordantMatePairAlignments=31;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_001128202;RightGenes=NM_001128202;XRef=;Frequency=0.00
chr10	CG	SV	127360085	127360382	31	-	.	ID=843;Type=tandem-duplication;Left=chr10:127360085-127360382;Right=chr10:127360446-127360720
chr10	CG	SV	127360446	127360720	31	-	.	ID=843;Type=tandem-duplication;Left=chr10:127360085-127360382;Right=chr10:127360446-127360720
chr10	CG	SV	127585053	127597595	50	.	.	ID=238;Type=probable-inversion;Left=chr10:127585053-127585507-;Right=chr10:127597367-127597595+;Distance=11860;DiscordantMatePairAlignments=50;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_145235;RightGenes=NM_145235;XRef=;Frequency=0.59
chr10	CG	SV	127585053	127585507	50	-	.	ID=238;Type=probable-inversion;Left=chr10:127585053-127585507;Right=chr10:127597367-127597595
chr10	CG	SV	127597367	127597595	50	-	.	ID=238;Type=probable-inversion;Left=chr10:127585053-127585507;Right=chr10:127597367-127597595
chr10	CG	SV	127735177	127736517	169	.	.	ID=2166;Type=deletion;Left=chr10:127735177-127735692+;Right=chr10:127735977-127736517+;Distance=800;DiscordantMatePairAlignments=169;LeftRepeat=;RightRepeat=;LeftGenes=NM_003474;NM_021641;RightGenes=NM_003474;NM_021641;XRef=rs67650775 (chr10:127735174-127735974);Frequency=0.94
chr10	CG	SV	127735177	127735692	169	+	.	ID=2166;Type=deletion;Left=chr10:127735177-127735692;Right=chr10:127735977-127736517
chr10	CG	SV	127735977	127736517	169	+	.	ID=2166;Type=deletion;Left=chr10:127735177-127735692;Right=chr10:127735977-127736517
chr10	CG	SV	128578838	128582706	76	.	.	ID=2164;Type=deletion;Left=chr10:128578838-128579230+;Right=chr10:128582205-128582706+;Distance=3367;DiscordantMatePairAlignments=76;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	128578838	128579230	76	+	.	ID=2164;Type=deletion;Left=chr10:128578838-128579230;Right=chr10:128582205-128582706
chr10	CG	SV	128582205	128582706	76	+	.	ID=2164;Type=deletion;Left=chr10:128578838-128579230;Right=chr10:128582205-128582706
chr10	CG	SV	132048464	132049383	24	.	.	ID=2160;Type=deletion;Left=chr10:132048464-132048996+;Right=chr10:132048968-132049383+;Distance=504;DiscordantMatePairAlignments=24;LeftRepeat=(TC)n:Simple_repeat:Simple_repeat;Tandem CTCTCT;Tandem period 10;Tandem period 14;Tandem period 8;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs33996726 (chr10:132048415-132048801);Frequency=1.00
chr10	CG	SV	132048464	132048996	24	+	.	ID=2160;Type=deletion;Left=chr10:132048464-132048996;Right=chr10:132048968-132049383
chr10	CG	SV	132048968	132049383	24	+	.	ID=2160;Type=deletion;Left=chr10:132048464-132048996;Right=chr10:132048968-132049383
chr10	CG	SV	134026327	134026969	10	.	.	ID=2157;Type=deletion;Left=chr10:134026327-134026828+;Right=chr10:134026805-134026969+;Distance=478;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 39;Tandem period 81;RightRepeat=Self chain;LeftGenes=NM_001143757;NM_030626;NR_026559;RightGenes=NM_001143757;NM_030626;NR_026559;XRef=;Frequency=0.59
chr10	CG	SV	134026327	134026828	10	+	.	ID=2157;Type=deletion;Left=chr10:134026327-134026828;Right=chr10:134026805-134026969
chr10	CG	SV	134026805	134026969	10	+	.	ID=2157;Type=deletion;Left=chr10:134026327-134026828;Right=chr10:134026805-134026969
chr11	CG	SV	1619556	1620525	114	.	.	ID=2152;Type=deletion;Left=chr11:1619556-1620096+;Right=chr11:1620138-1620525+;Distance=582;DiscordantMatePairAlignments=114;LeftRepeat=(CACCC)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 16;Tandem period 31;RightRepeat=(CACCC)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 16;Tandem period 31;LeftGenes=NM_053005;RightGenes=NM_053005;XRef=;Frequency=0.94
chr11	CG	SV	1619556	1620096	114	+	.	ID=2152;Type=deletion;Left=chr11:1619556-1620096;Right=chr11:1620138-1620525
chr11	CG	SV	1620138	1620525	114	+	.	ID=2152;Type=deletion;Left=chr11:1619556-1620096;Right=chr11:1620138-1620525
chr11	CG	SV	1871833	1894120	69	.	.	ID=2151;Type=deletion;Left=chr11:1871833-1872186+;Right=chr11:1893533-1894120+;Distance=21700;DiscordantMatePairAlignments=69;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	1871833	1872186	69	+	.	ID=2151;Type=deletion;Left=chr11:1871833-1872186;Right=chr11:1893533-1894120
chr11	CG	SV	1893533	1894120	69	+	.	ID=2151;Type=deletion;Left=chr11:1871833-1872186;Right=chr11:1893533-1894120
chr11	CG	SV	3344884	3346405	19	.	.	ID=2150;Type=deletion;Left=chr11:3344884-3345510+;Right=chr11:3345967-3346405+;Distance=1083;DiscordantMatePairAlignments=19;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_001130519;NM_001130520;NM_007152;RightGenes=NM_001130519;NM_001130520;NM_007152;XRef=;Frequency=0.00
chr11	CG	SV	3344884	3345510	19	+	.	ID=2150;Type=deletion;Left=chr11:3344884-3345510;Right=chr11:3345967-3346405
chr11	CG	SV	3345967	3346405	19	+	.	ID=2150;Type=deletion;Left=chr11:3344884-3345510;Right=chr11:3345967-3346405
chr11	CG	SV	5830565	5840435	33	.	.	ID=2149;Type=deletion;Left=chr11:5830565-5831010+;Right=chr11:5840074-5840435+;Distance=9509;DiscordantMatePairAlignments=33;LeftRepeat=L1PA16:LINE:L1;Self chain;RightRepeat=L1M3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	5830565	5831010	33	+	.	ID=2149;Type=deletion;Left=chr11:5830565-5831010;Right=chr11:5840074-5840435
chr11	CG	SV	5840074	5840435	33	+	.	ID=2149;Type=deletion;Left=chr11:5830565-5831010;Right=chr11:5840074-5840435
chr11	CG	SV	6020445	6022318	40	.	.	ID=834;Type=distal-duplication;Left=chr11:6020445-6020667-;Right=chr11:6021859-6022318-;Distance=1651;DiscordantMatePairAlignments=40;LeftRepeat=L1MEc:LINE:L1;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	6020445	6020667	40	-	.	ID=834;Type=distal-duplication;Left=chr11:6020445-6020667;Right=chr11:6021859-6022318
chr11	CG	SV	6021859	6022318	40	-	.	ID=834;Type=distal-duplication;Left=chr11:6020445-6020667;Right=chr11:6021859-6022318
chr11	CG	SV	6021063	6022687	12	.	.	ID=2148;Type=distal-duplication;Left=chr11:6021063-6021403+;Right=chr11:6022413-6022687+;Distance=1350;DiscordantMatePairAlignments=12;LeftRepeat=AluSp:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	6021063	6021403	12	+	.	ID=2148;Type=distal-duplication;Left=chr11:6021063-6021403;Right=chr11:6022413-6022687
chr11	CG	SV	6022413	6022687	12	+	.	ID=2148;Type=distal-duplication;Left=chr11:6021063-6021403;Right=chr11:6022413-6022687
chr11	CG	SV	7469150	7469572	32	.	.	ID=833;Type=tandem-duplication;Left=chr11:7469150-7469350-;Right=chr11:7469335-7469572-;Distance=222;DiscordantMatePairAlignments=32;LeftRepeat=;RightRepeat=MLT1E1:LTR:MaLR;LeftGenes=NM_198474;RightGenes=NM_198474;XRef=;Frequency=0.35
chr11	CG	SV	7469150	7469350	32	-	.	ID=833;Type=tandem-duplication;Left=chr11:7469150-7469350;Right=chr11:7469335-7469572
chr11	CG	SV	7469335	7469572	32	-	.	ID=833;Type=tandem-duplication;Left=chr11:7469150-7469350;Right=chr11:7469335-7469572
chr11	CG	SV	7673491	7674280	12	.	.	ID=2147;Type=deletion;Left=chr11:7673491-7674011+;Right=chr11:7673807-7674280+;Distance=316;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_198185;RightGenes=NM_198185;XRef=rs6144199 (chr11:7673479-7673795);Frequency=1.00
chr11	CG	SV	7673491	7674011	12	+	.	ID=2147;Type=deletion;Left=chr11:7673491-7674011;Right=chr11:7673807-7674280
chr11	CG	SV	7673807	7674280	12	+	.	ID=2147;Type=deletion;Left=chr11:7673491-7674011;Right=chr11:7673807-7674280
chr11	CG	SV	9894976	9896494	27	.	.	ID=2144;Type=deletion;Left=chr11:9894976-9895469+;Right=chr11:9896305-9896494+;Distance=1329;DiscordantMatePairAlignments=27;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_030962;RightGenes=NM_030962;XRef=;Frequency=0.00
chr11	CG	SV	9894976	9895469	27	+	.	ID=2144;Type=deletion;Left=chr11:9894976-9895469;Right=chr11:9896305-9896494
chr11	CG	SV	9896305	9896494	27	+	.	ID=2144;Type=deletion;Left=chr11:9894976-9895469;Right=chr11:9896305-9896494
chr11	CG	SV	10249322	10250853	59	.	.	ID=2143;Type=deletion;Left=chr11:10249322-10249860+;Right=chr11:10250428-10250853+;Distance=1106;DiscordantMatePairAlignments=59;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_030962;RightGenes=NM_030962;XRef=;Frequency=0.53
chr11	CG	SV	10249322	10249860	59	+	.	ID=2143;Type=deletion;Left=chr11:10249322-10249860;Right=chr11:10250428-10250853
chr11	CG	SV	10250428	10250853	59	+	.	ID=2143;Type=deletion;Left=chr11:10249322-10249860;Right=chr11:10250428-10250853
chr11	CG	SV	12358301	12359486	111	.	.	ID=2142;Type=deletion;Left=chr11:12358301-12358747+;Right=chr11:12358925-12359486+;Distance=624;DiscordantMatePairAlignments=111;LeftRepeat=LTR33:LTR:ERVL;RightRepeat=L3:LINE:CR1;LeftGenes=NM_018222;RightGenes=NM_018222;XRef=rs72323554 (chr11:12358301-12358925);Frequency=0.06
chr11	CG	SV	12358301	12358747	111	+	.	ID=2142;Type=deletion;Left=chr11:12358301-12358747;Right=chr11:12358925-12359486
chr11	CG	SV	12358925	12359486	111	+	.	ID=2142;Type=deletion;Left=chr11:12358301-12358747;Right=chr11:12358925-12359486
chr11	CG	SV	16952754	16953699	14	.	.	ID=2140;Type=deletion;Left=chr11:16952754-16953116+;Right=chr11:16953178-16953699+;Distance=424;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=L1MD2:LINE:L1;Self chain;LeftGenes=NM_175058;RightGenes=NM_175058;XRef=rs72068241 (chr11:16952745-16953169);Frequency=0.88
chr11	CG	SV	16952754	16953116	14	+	.	ID=2140;Type=deletion;Left=chr11:16952754-16953116;Right=chr11:16953178-16953699
chr11	CG	SV	16953178	16953699	14	+	.	ID=2140;Type=deletion;Left=chr11:16952754-16953116;Right=chr11:16953178-16953699
chr11	CG	SV	17166332	17168089	59	.	.	ID=2138;Type=deletion;Left=chr11:17166332-17166884+;Right=chr11:17167795-17168089+;Distance=1463;DiscordantMatePairAlignments=59;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=L1MB7:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	17166332	17166884	59	+	.	ID=2138;Type=deletion;Left=chr11:17166332-17166884;Right=chr11:17167795-17168089
chr11	CG	SV	17167795	17168089	59	+	.	ID=2138;Type=deletion;Left=chr11:17166332-17166884;Right=chr11:17167795-17168089
chr11	CG	SV	24241308	24244489	19	.	.	ID=3605;Type=probable-inversion;Left=chr11:24241308-24241663+;Right=chr11:24244322-24244489-;Distance=3181;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr11	CG	SV	24241308	24241663	19	+	.	ID=3605;Type=probable-inversion;Left=chr11:24241308-24241663;Right=chr11:24244322-24244489
chr11	CG	SV	24244322	24244489	19	+	.	ID=3605;Type=probable-inversion;Left=chr11:24241308-24241663;Right=chr11:24244322-24244489
chr11	CG	SV	24860198	24861873	33	.	.	ID=233;Type=distal-duplication;Left=chr11:24860198-24860531-;Right=chr11:24861458-24861873+;Distance=927;DiscordantMatePairAlignments=33;LeftRepeat=L1MC1:LINE:L1;RightRepeat=Self chain;LeftGenes=NM_001009909;RightGenes=NM_001009909;XRef=;Frequency=0.00
chr11	CG	SV	24860198	24860531	33	-	.	ID=233;Type=distal-duplication;Left=chr11:24860198-24860531;Right=chr11:24861458-24861873
chr11	CG	SV	24861458	24861873	33	-	.	ID=233;Type=distal-duplication;Left=chr11:24860198-24860531;Right=chr11:24861458-24861873
chr11	CG	SV	24860989	24861450	47	.	.	ID=3604;Type=distal-duplication;Left=chr11:24860989-24861375+;Right=chr11:24860971-24861450-;Distance=461;DiscordantMatePairAlignments=47;LeftRepeat=GA-rich:Low_complexity:Low_complexity;Tandem AGAA;Tandem period 10;RightRepeat=Self chain;LeftGenes=NM_001009909;RightGenes=NM_001009909;XRef=;Frequency=0.00
chr11	CG	SV	24860989	24861375	47	+	.	ID=3604;Type=distal-duplication;Left=chr11:24860989-24861375;Right=chr11:24860971-24861450
chr11	CG	SV	24860971	24861450	47	+	.	ID=3604;Type=distal-duplication;Left=chr11:24860989-24861375;Right=chr11:24860971-24861450
chr11	CG	SV	29924155	29925345	36	.	.	ID=2132;Type=deletion;Left=chr11:29924155-29924692+;Right=chr11:29925043-29925345+;Distance=888;DiscordantMatePairAlignments=36;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72176999 (chr11:29924154-29925042);Frequency=0.71
chr11	CG	SV	29924155	29924692	36	+	.	ID=2132;Type=deletion;Left=chr11:29924155-29924692;Right=chr11:29925043-29925345
chr11	CG	SV	29925043	29925345	36	+	.	ID=2132;Type=deletion;Left=chr11:29924155-29924692;Right=chr11:29925043-29925345
chr11	CG	SV	33494263	33495192	10	.	.	ID=2128;Type=deletion;Left=chr11:33494263-33494719+;Right=chr11:33494586-33495192+;Distance=323;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71016499 (chr11:33494263-33494586);Frequency=0.71
chr11	CG	SV	33494263	33494719	10	+	.	ID=2128;Type=deletion;Left=chr11:33494263-33494719;Right=chr11:33494586-33495192
chr11	CG	SV	33494586	33495192	10	+	.	ID=2128;Type=deletion;Left=chr11:33494263-33494719;Right=chr11:33494586-33495192
chr11	CG	SV	38413763	38420900	58	.	.	ID=2127;Type=deletion;Left=chr11:38413763-38414242+;Right=chr11:38420520-38420900+;Distance=6757;DiscordantMatePairAlignments=58;LeftRepeat=L1MA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	38413763	38414242	58	+	.	ID=2127;Type=deletion;Left=chr11:38413763-38414242;Right=chr11:38420520-38420900
chr11	CG	SV	38420520	38420900	58	+	.	ID=2127;Type=deletion;Left=chr11:38413763-38414242;Right=chr11:38420520-38420900
chr11	CG	SV	41774774	41776030	52	.	.	ID=2126;Type=deletion;Left=chr11:41774774-41775123+;Right=chr11:41775600-41776030+;Distance=826;DiscordantMatePairAlignments=52;LeftRepeat=LTR48-int:LTR:ERV1;Self chain;RightRepeat=LTR49-int:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs71935997 (chr11:41774772-41775598);Frequency=0.65
chr11	CG	SV	41774774	41775123	52	+	.	ID=2126;Type=deletion;Left=chr11:41774774-41775123;Right=chr11:41775600-41776030
chr11	CG	SV	41775600	41776030	52	+	.	ID=2126;Type=deletion;Left=chr11:41774774-41775123;Right=chr11:41775600-41776030
chr11	CG	SV	43848420	43849260	13	.	.	ID=2125;Type=deletion;Left=chr11:43848420-43848762+;Right=chr11:43848756-43849260+;Distance=336;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs10525689 (chr11:43848420-43848756);Frequency=1.00
chr11	CG	SV	43848420	43848762	13	+	.	ID=2125;Type=deletion;Left=chr11:43848420-43848762;Right=chr11:43848756-43849260
chr11	CG	SV	43848756	43849260	13	+	.	ID=2125;Type=deletion;Left=chr11:43848420-43848762;Right=chr11:43848756-43849260
chr11	CG	SV	47718555	47720182	14	.	.	ID=2124;Type=deletion;Left=chr11:47718555-47719049+;Right=chr11:47719955-47720182+;Distance=1400;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_015308;RightGenes=NM_015308;XRef=;Frequency=0.00
chr11	CG	SV	47718555	47719049	14	+	.	ID=2124;Type=deletion;Left=chr11:47718555-47719049;Right=chr11:47719955-47720182
chr11	CG	SV	47719955	47720182	14	+	.	ID=2124;Type=deletion;Left=chr11:47718555-47719049;Right=chr11:47719955-47720182
chr11	CG	SV	48308217	48309204	12	.	.	ID=2122;Type=deletion;Left=chr11:48308217-48308563+;Right=chr11:48308717-48309204+;Distance=500;DiscordantMatePairAlignments=12;LeftRepeat=(TTTTA)n:Simple_repeat:Simple_repeat;Tandem TTATT;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	48308217	48308563	12	+	.	ID=2122;Type=deletion;Left=chr11:48308217-48308563;Right=chr11:48308717-48309204
chr11	CG	SV	48308717	48309204	12	+	.	ID=2122;Type=deletion;Left=chr11:48308217-48308563;Right=chr11:48308717-48309204
chr11	CG	SV	48324096	48330645	84	.	.	ID=2121;Type=deletion;Left=chr11:48324096-48324645+;Right=chr11:48330277-48330645+;Distance=6181;DiscordantMatePairAlignments=84;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001005513;RightGenes=NM_001005513;XRef=rs71787435 (chr11:48324104-48330285);Frequency=1.00
chr11	CG	SV	48324096	48324645	84	+	.	ID=2121;Type=deletion;Left=chr11:48324096-48324645;Right=chr11:48330277-48330645
chr11	CG	SV	48330277	48330645	84	+	.	ID=2121;Type=deletion;Left=chr11:48324096-48324645;Right=chr11:48330277-48330645
chr11	CG	SV	48557434	48561373	44	.	.	ID=2120;Type=deletion;Left=chr11:48557434-48557884+;Right=chr11:48560860-48561373+;Distance=3426;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;RightRepeat=MLT1H1:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=rs67661836 (chr11:48557432-48560858);Frequency=0.88
chr11	CG	SV	48557434	48557884	44	+	.	ID=2120;Type=deletion;Left=chr11:48557434-48557884;Right=chr11:48560860-48561373
chr11	CG	SV	48560860	48561373	44	+	.	ID=2120;Type=deletion;Left=chr11:48557434-48557884;Right=chr11:48560860-48561373
chr11	CG	SV	58214596	58218998	76	.	.	ID=2113;Type=deletion;Left=chr11:58214596-58215052+;Right=chr11:58218500-58218998+;Distance=3904;DiscordantMatePairAlignments=76;LeftRepeat=Self chain;RightRepeat=MLT2B1:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	58214596	58215052	76	+	.	ID=2113;Type=deletion;Left=chr11:58214596-58215052;Right=chr11:58218500-58218998
chr11	CG	SV	58218500	58218998	76	+	.	ID=2113;Type=deletion;Left=chr11:58214596-58215052;Right=chr11:58218500-58218998
chr11	CG	SV	60608422	60610931	36	.	.	ID=2111;Type=deletion;Left=chr11:60608422-60608894+;Right=chr11:60610484-60610931+;Distance=2062;DiscordantMatePairAlignments=36;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr11	CG	SV	60608422	60608894	36	+	.	ID=2111;Type=deletion;Left=chr11:60608422-60608894;Right=chr11:60610484-60610931
chr11	CG	SV	60610484	60610931	36	+	.	ID=2111;Type=deletion;Left=chr11:60608422-60608894;Right=chr11:60610484-60610931
chr11	CG	SV	61939394	61940273	13	.	.	ID=2110;Type=deletion;Left=chr11:61939394-61940063+;Right=chr11:61940090-61940273+;Distance=696;DiscordantMatePairAlignments=13;LeftRepeat=AluSp:SINE:Alu;Self chain;RightRepeat=AluSq:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	61939394	61940063	13	+	.	ID=2110;Type=deletion;Left=chr11:61939394-61940063;Right=chr11:61940090-61940273
chr11	CG	SV	61940090	61940273	13	+	.	ID=2110;Type=deletion;Left=chr11:61939394-61940063;Right=chr11:61940090-61940273
chr11	CG	SV	62268930	62269960	10	.	.	ID=2109;Type=deletion;Left=chr11:62268930-62269204+;Right=chr11:62269771-62269960+;Distance=841;DiscordantMatePairAlignments=10;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr11	CG	SV	62268930	62269204	10	+	.	ID=2109;Type=deletion;Left=chr11:62268930-62269204;Right=chr11:62269771-62269960
chr11	CG	SV	62269771	62269960	10	+	.	ID=2109;Type=deletion;Left=chr11:62268930-62269204;Right=chr11:62269771-62269960
chr11	CG	SV	68487945	68488223	11	.	.	ID=824;Type=tandem-duplication;Left=chr11:68487945-68488030-;Right=chr11:68488063-68488223-;Distance=193;DiscordantMatePairAlignments=11;LeftRepeat=MLT1K:LTR:MaLR;Self chain;Tandem period 33;Tandem period 99;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	68487945	68488030	11	-	.	ID=824;Type=tandem-duplication;Left=chr11:68487945-68488030;Right=chr11:68488063-68488223
chr11	CG	SV	68488063	68488223	11	-	.	ID=824;Type=tandem-duplication;Left=chr11:68487945-68488030;Right=chr11:68488063-68488223
chr11	CG	SV	69367707	69368235	20	.	.	ID=2104;Type=complex;Left=chr11:69367707-69367947+;Right=chr11:69367873-69368235+;Distance=166;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GAT;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	69367707	69367947	20	+	.	ID=2104;Type=complex;Left=chr11:69367707-69367947;Right=chr11:69367873-69368235
chr11	CG	SV	69367873	69368235	20	+	.	ID=2104;Type=complex;Left=chr11:69367707-69367947;Right=chr11:69367873-69368235
chr11	CG	SV	69367760	69368316	13	.	.	ID=823;Type=complex;Left=chr11:69367760-69367909-;Right=chr11:69368136-69368316-;Distance=407;DiscordantMatePairAlignments=13;LeftRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	69367760	69367909	13	-	.	ID=823;Type=complex;Left=chr11:69367760-69367909;Right=chr11:69368136-69368316
chr11	CG	SV	69368136	69368316	13	-	.	ID=823;Type=complex;Left=chr11:69367760-69367909;Right=chr11:69368136-69368316
chr11	CG	SV	69894984	69895322	13	.	.	ID=822;Type=tandem-duplication;Left=chr11:69894984-69895078-;Right=chr11:69895100-69895322-;Distance=244;DiscordantMatePairAlignments=13;LeftRepeat=L1MD:LINE:L1;Self chain;Tandem period 27;RightRepeat=L1M5:LINE:L1;Self chain;Tandem period 27;LeftGenes=NM_003626;NM_177423;RightGenes=NM_003626;NM_177423;XRef=;Frequency=1.00
chr11	CG	SV	69894984	69895078	13	-	.	ID=822;Type=tandem-duplication;Left=chr11:69894984-69895078;Right=chr11:69895100-69895322
chr11	CG	SV	69895100	69895322	13	-	.	ID=822;Type=tandem-duplication;Left=chr11:69894984-69895078;Right=chr11:69895100-69895322
chr11	CG	SV	73702556	73705407	54	.	.	ID=2103;Type=deletion;Left=chr11:73702556-73702995+;Right=chr11:73705038-73705407+;Distance=2482;DiscordantMatePairAlignments=54;LeftRepeat=Arthur1:DNA:Tip100;Self chain;RightRepeat=L1MB7:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr11	CG	SV	73702556	73702995	54	+	.	ID=2103;Type=deletion;Left=chr11:73702556-73702995;Right=chr11:73705038-73705407
chr11	CG	SV	73705038	73705407	54	+	.	ID=2103;Type=deletion;Left=chr11:73702556-73702995;Right=chr11:73705038-73705407
chr11	CG	SV	75819977	75826509	126	.	.	ID=2100;Type=deletion;Left=chr11:75819977-75820572+;Right=chr11:75826201-75826509+;Distance=6224;DiscordantMatePairAlignments=126;LeftRepeat=Self chain;RightRepeat=L1MDa:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	75819977	75820572	126	+	.	ID=2100;Type=deletion;Left=chr11:75819977-75820572;Right=chr11:75826201-75826509
chr11	CG	SV	75826201	75826509	126	+	.	ID=2100;Type=deletion;Left=chr11:75819977-75820572;Right=chr11:75826201-75826509
chr11	CG	SV	85963609	85964863	56	.	.	ID=2097;Type=deletion;Left=chr11:85963609-85963923+;Right=chr11:85964370-85964863+;Distance=761;DiscordantMatePairAlignments=56;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001014811;NM_001161586;NM_006680;RightGenes=NM_001014811;NM_001161586;NM_006680;XRef=rs71790699 (chr11:85963609-85964370);Frequency=0.18
chr11	CG	SV	85963609	85963923	56	+	.	ID=2097;Type=deletion;Left=chr11:85963609-85963923;Right=chr11:85964370-85964863
chr11	CG	SV	85964370	85964863	56	+	.	ID=2097;Type=deletion;Left=chr11:85963609-85963923;Right=chr11:85964370-85964863
chr11	CG	SV	88604133	88608089	14	.	.	ID=2096;Type=deletion;Left=chr11:88604133-88604271+;Right=chr11:88607581-88608089+;Distance=3448;DiscordantMatePairAlignments=14;LeftRepeat=L1MA8:LINE:L1;Self chain;RightRepeat=Self chain;Tigger1:DNA:MER2_type;LeftGenes=NM_000372;RightGenes=NM_000372;XRef=;Frequency=0.24
chr11	CG	SV	88604133	88604271	14	+	.	ID=2096;Type=deletion;Left=chr11:88604133-88604271;Right=chr11:88607581-88608089
chr11	CG	SV	88607581	88608089	14	+	.	ID=2096;Type=deletion;Left=chr11:88604133-88604271;Right=chr11:88607581-88608089
chr11	CG	SV	90207724	90211132	62	.	.	ID=2094;Type=deletion;Left=chr11:90207724-90208273+;Right=chr11:90210724-90211132+;Distance=3000;DiscordantMatePairAlignments=62;LeftRepeat=HERV16:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr11	CG	SV	90207724	90208273	62	+	.	ID=2094;Type=deletion;Left=chr11:90207724-90208273;Right=chr11:90210724-90211132
chr11	CG	SV	90210724	90211132	62	+	.	ID=2094;Type=deletion;Left=chr11:90207724-90208273;Right=chr11:90210724-90211132
chr11	CG	SV	92660787	92662305	38	.	.	ID=2092;Type=deletion;Left=chr11:92660787-92661428+;Right=chr11:92661808-92662305+;Distance=1021;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72450406 (chr11:92660787-92661807);Frequency=0.29
chr11	CG	SV	92660787	92661428	38	+	.	ID=2092;Type=deletion;Left=chr11:92660787-92661428;Right=chr11:92661808-92662305
chr11	CG	SV	92661808	92662305	38	+	.	ID=2092;Type=deletion;Left=chr11:92660787-92661428;Right=chr11:92661808-92662305
chr11	CG	SV	93318890	93321648	66	.	.	ID=2090;Type=deletion;Left=chr11:93318890-93319418+;Right=chr11:93321084-93321648+;Distance=2194;DiscordantMatePairAlignments=66;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72041214 (chr11:93318877-93321071);Frequency=0.76
chr11	CG	SV	93318890	93319418	66	+	.	ID=2090;Type=deletion;Left=chr11:93318890-93319418;Right=chr11:93321084-93321648
chr11	CG	SV	93321084	93321648	66	+	.	ID=2090;Type=deletion;Left=chr11:93318890-93319418;Right=chr11:93321084-93321648
chr11	CG	SV	97978867	97982119	79	.	.	ID=2087;Type=deletion;Left=chr11:97978867-97979327+;Right=chr11:97981679-97982119+;Distance=2812;DiscordantMatePairAlignments=79;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	97978867	97979327	79	+	.	ID=2087;Type=deletion;Left=chr11:97978867-97979327;Right=chr11:97981679-97982119
chr11	CG	SV	97981679	97982119	79	+	.	ID=2087;Type=deletion;Left=chr11:97978867-97979327;Right=chr11:97981679-97982119
chr11	CG	SV	99195693	99196517	106	.	.	ID=3595;Type=probable-inversion;Left=chr11:99195693-99196089+;Right=chr11:99196164-99196517-;Distance=824;DiscordantMatePairAlignments=106;LeftRepeat=;RightRepeat=;LeftGenes=NM_014361;NM_175566;RightGenes=NM_014361;NM_175566;XRef=;Frequency=1.00
chr11	CG	SV	99195693	99196089	106	+	.	ID=3595;Type=probable-inversion;Left=chr11:99195693-99196089;Right=chr11:99196164-99196517
chr11	CG	SV	99196164	99196517	106	+	.	ID=3595;Type=probable-inversion;Left=chr11:99195693-99196089;Right=chr11:99196164-99196517
chr11	CG	SV	99875650	99876103	17	.	.	ID=817;Type=tandem-duplication;Left=chr11:99875650-99875882-;Right=chr11:99875877-99876103-;Distance=221;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	99875650	99875882	17	-	.	ID=817;Type=tandem-duplication;Left=chr11:99875650-99875882;Right=chr11:99875877-99876103
chr11	CG	SV	99875877	99876103	17	-	.	ID=817;Type=tandem-duplication;Left=chr11:99875650-99875882;Right=chr11:99875877-99876103
chr11	CG	SV	100949824	100950925	48	.	.	ID=2084;Type=deletion;Left=chr11:100949824-100950210+;Right=chr11:100950662-100950925+;Distance=838;DiscordantMatePairAlignments=48;LeftRepeat=Kanga1:DNA:Tc2;RightRepeat=;LeftGenes=NM_004621;RightGenes=NM_004621;XRef=;Frequency=0.18
chr11	CG	SV	100949824	100950210	48	+	.	ID=2084;Type=deletion;Left=chr11:100949824-100950210;Right=chr11:100950662-100950925
chr11	CG	SV	100950662	100950925	48	+	.	ID=2084;Type=deletion;Left=chr11:100949824-100950210;Right=chr11:100950662-100950925
chr11	CG	SV	102256340	102258465	13	.	.	ID=2083;Type=deletion;Left=chr11:102256340-102256708+;Right=chr11:102258038-102258465+;Distance=1698;DiscordantMatePairAlignments=13;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr11	CG	SV	102256340	102256708	13	+	.	ID=2083;Type=deletion;Left=chr11:102256340-102256708;Right=chr11:102258038-102258465
chr11	CG	SV	102258038	102258465	13	+	.	ID=2083;Type=deletion;Left=chr11:102256340-102256708;Right=chr11:102258038-102258465
chr11	CG	SV	102916031	102916859	12	.	.	ID=2082;Type=deletion;Left=chr11:102916031-102916446+;Right=chr11:102916344-102916859+;Distance=313;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6144489 (chr11:102916041-102916354);Frequency=1.00
chr11	CG	SV	102916031	102916446	12	+	.	ID=2082;Type=deletion;Left=chr11:102916031-102916446;Right=chr11:102916344-102916859
chr11	CG	SV	102916344	102916859	12	+	.	ID=2082;Type=deletion;Left=chr11:102916031-102916446;Right=chr11:102916344-102916859
chr11	CG	SV	103515693	103516422	11	.	.	ID=2081;Type=deletion;Left=chr11:103515693-103516247+;Right=chr11:103516039-103516422+;Distance=346;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_025208;NM_033135;RightGenes=NM_025208;NM_033135;XRef=rs67756655 (chr11:103515683-103516027);Frequency=0.88
chr11	CG	SV	103515693	103516247	11	+	.	ID=2081;Type=deletion;Left=chr11:103515693-103516247;Right=chr11:103516039-103516422
chr11	CG	SV	103516039	103516422	11	+	.	ID=2081;Type=deletion;Left=chr11:103515693-103516247;Right=chr11:103516039-103516422
chr11	CG	SV	103569733	103572024	68	.	.	ID=2080;Type=deletion;Left=chr11:103569733-103570308+;Right=chr11:103571596-103572024+;Distance=1863;DiscordantMatePairAlignments=68;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	103569733	103570308	68	+	.	ID=2080;Type=deletion;Left=chr11:103569733-103570308;Right=chr11:103571596-103572024
chr11	CG	SV	103571596	103572024	68	+	.	ID=2080;Type=deletion;Left=chr11:103569733-103570308;Right=chr11:103571596-103572024
chr11	CG	SV	103772961	103778922	46	.	.	ID=2079;Type=deletion;Left=chr11:103772961-103773427+;Right=chr11:103778442-103778922+;Distance=5481;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66562305 (chr11:103772961-103778442);Frequency=0.88
chr11	CG	SV	103772961	103773427	46	+	.	ID=2079;Type=deletion;Left=chr11:103772961-103773427;Right=chr11:103778442-103778922
chr11	CG	SV	103778442	103778922	46	+	.	ID=2079;Type=deletion;Left=chr11:103772961-103773427;Right=chr11:103778442-103778922
chr11	CG	SV	108307729	108309765	64	.	.	ID=2078;Type=deletion;Left=chr11:108307729-108308213+;Right=chr11:108309336-108309765+;Distance=1607;DiscordantMatePairAlignments=64;LeftRepeat=L3:LINE:CR1;RightRepeat=MER31B:LTR:ERV1;LeftGenes=NM_004398;RightGenes=NM_004398;XRef=;Frequency=0.00
chr11	CG	SV	108307729	108308213	64	+	.	ID=2078;Type=deletion;Left=chr11:108307729-108308213;Right=chr11:108309336-108309765
chr11	CG	SV	108309336	108309765	64	+	.	ID=2078;Type=deletion;Left=chr11:108307729-108308213;Right=chr11:108309336-108309765
chr11	CG	SV	113930121	113937560	76	.	.	ID=2077;Type=deletion;Left=chr11:113930121-113930543+;Right=chr11:113937141-113937560+;Distance=7020;DiscordantMatePairAlignments=76;LeftRepeat=MLT1J:LTR:MaLR;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_152315;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	113930121	113930543	76	+	.	ID=2077;Type=deletion;Left=chr11:113930121-113930543;Right=chr11:113937141-113937560
chr11	CG	SV	113937141	113937560	76	+	.	ID=2077;Type=deletion;Left=chr11:113930121-113930543;Right=chr11:113937141-113937560
chr11	CG	SV	113938523	130736056	114	.	.	ID=2068;Type=deletion;Left=chr11:113938523-113939001+;Right=chr11:130735676-130736056+;Distance=16797153;DiscordantMatePairAlignments=114;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	113938523	113939001	114	+	.	ID=2068;Type=deletion;Left=chr11:113938523-113939001;Right=chr11:130735676-130736056
chr11	CG	SV	130735676	130736056	114	+	.	ID=2068;Type=deletion;Left=chr11:113938523-113939001;Right=chr11:130735676-130736056
chr11	CG	SV	118724518	118725390	10	.	.	ID=814;Type=tandem-duplication;Left=chr11:118724518-118724939-;Right=chr11:118725233-118725390-;Distance=451;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;Tandem period 317;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	118724518	118724939	10	-	.	ID=814;Type=tandem-duplication;Left=chr11:118724518-118724939;Right=chr11:118725233-118725390
chr11	CG	SV	118725233	118725390	10	-	.	ID=814;Type=tandem-duplication;Left=chr11:118724518-118724939;Right=chr11:118725233-118725390
chr11	CG	SV	119437267	119437867	58	.	.	ID=813;Type=tandem-duplication;Left=chr11:119437267-119437386-;Right=chr11:119437409-119437867-;Distance=481;DiscordantMatePairAlignments=58;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr11	CG	SV	119437267	119437386	58	-	.	ID=813;Type=tandem-duplication;Left=chr11:119437267-119437386;Right=chr11:119437409-119437867
chr11	CG	SV	119437409	119437867	58	-	.	ID=813;Type=tandem-duplication;Left=chr11:119437267-119437386;Right=chr11:119437409-119437867
chr11	CG	SV	121852806	121854944	125	.	.	ID=2073;Type=deletion;Left=chr11:121852806-121853355+;Right=chr11:121854510-121854944+;Distance=1704;DiscordantMatePairAlignments=125;LeftRepeat=L1HS:LINE:L1;RightRepeat=GA-rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	121852806	121853355	125	+	.	ID=2073;Type=deletion;Left=chr11:121852806-121853355;Right=chr11:121854510-121854944
chr11	CG	SV	121854510	121854944	125	+	.	ID=2073;Type=deletion;Left=chr11:121852806-121853355;Right=chr11:121854510-121854944
chr11	CG	SV	123184181	123187344	26	.	.	ID=2072;Type=deletion;Left=chr11:123184181-123184605+;Right=chr11:123187012-123187344+;Distance=2831;DiscordantMatePairAlignments=26;LeftRepeat=MIR3:SINE:MIR;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	123184181	123184605	26	+	.	ID=2072;Type=deletion;Left=chr11:123184181-123184605;Right=chr11:123187012-123187344
chr11	CG	SV	123187012	123187344	26	+	.	ID=2072;Type=deletion;Left=chr11:123184181-123184605;Right=chr11:123187012-123187344
chr11	CG	SV	126007806	126007877	20	.	.	ID=3592;Type=probable-inversion;Left=chr11:126007806-126008190+;Right=chr11:126007787-126007877-;Distance=71;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=;LeftGenes=NM_001161707;NM_032531;RightGenes=NM_001161707;NM_032531;XRef=;Frequency=1.00
chr11	CG	SV	126007806	126008190	20	+	.	ID=3592;Type=probable-inversion;Left=chr11:126007806-126008190;Right=chr11:126007787-126007877
chr11	CG	SV	126007787	126007877	20	+	.	ID=3592;Type=probable-inversion;Left=chr11:126007806-126008190;Right=chr11:126007787-126007877
chr11	CG	SV	127589490	127592241	38	.	.	ID=2071;Type=deletion;Left=chr11:127589490-127589944+;Right=chr11:127591866-127592241+;Distance=2376;DiscordantMatePairAlignments=38;LeftRepeat=LTR12C:LTR:ERV1;RightRepeat=L1MD:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	127589490	127589944	38	+	.	ID=2071;Type=deletion;Left=chr11:127589490-127589944;Right=chr11:127591866-127592241
chr11	CG	SV	127591866	127592241	38	+	.	ID=2071;Type=deletion;Left=chr11:127589490-127589944;Right=chr11:127591866-127592241
chr11	CG	SV	129730891	129735944	12	.	.	ID=2069;Type=deletion;Left=chr11:129730891-129731308+;Right=chr11:129735616-129735944+;Distance=4725;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	129730891	129731308	12	+	.	ID=2069;Type=deletion;Left=chr11:129730891-129731308;Right=chr11:129735616-129735944
chr11	CG	SV	129735616	129735944	12	+	.	ID=2069;Type=deletion;Left=chr11:129730891-129731308;Right=chr11:129735616-129735944
chr11	CG	SV	130707085	130710753	23	.	.	ID=2067;Type=complex;Left=chr11:130707085-130707341+;Right=chr11:130710449-130710753+;Distance=3364;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	130707085	130707341	23	+	.	ID=2067;Type=complex;Left=chr11:130707085-130707341;Right=chr11:130710449-130710753
chr11	CG	SV	130710449	130710753	23	+	.	ID=2067;Type=complex;Left=chr11:130707085-130707341;Right=chr11:130710449-130710753
chr11	CG	SV	130709135	130710948	26	.	.	ID=229;Type=complex;Left=chr11:130709135-130709231-;Right=chr11:130710452-130710948+;Distance=1221;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	130709135	130709231	26	-	.	ID=229;Type=complex;Left=chr11:130709135-130709231;Right=chr11:130710452-130710948
chr11	CG	SV	130710452	130710948	26	-	.	ID=229;Type=complex;Left=chr11:130709135-130709231;Right=chr11:130710452-130710948
chr11	CG	SV	134110459	134111444	53	.	.	ID=2066;Type=deletion;Left=chr11:134110459-134111140+;Right=chr11:134111071-134111444+;Distance=612;DiscordantMatePairAlignments=53;LeftRepeat=Self chain;Tandem period 36;RightRepeat=Self chain;Tandem period 36;LeftGenes=;RightGenes=;XRef=rs67758116 (chr11:134110307-134110991);Frequency=0.29
chr11	CG	SV	134110459	134111140	53	+	.	ID=2066;Type=deletion;Left=chr11:134110459-134111140;Right=chr11:134111071-134111444
chr11	CG	SV	134111071	134111444	53	+	.	ID=2066;Type=deletion;Left=chr11:134110459-134111140;Right=chr11:134111071-134111444
chr11	CG	SV	134238110	134239963	77	.	.	ID=2065;Type=deletion;Left=chr11:134238110-134238731+;Right=chr11:134239324-134239963+;Distance=1214;DiscordantMatePairAlignments=77;LeftRepeat=L1MC3:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72420438 (chr11:134238108-134239322);Frequency=0.29
chr11	CG	SV	134238110	134238731	77	+	.	ID=2065;Type=deletion;Left=chr11:134238110-134238731;Right=chr11:134239324-134239963
chr11	CG	SV	134239324	134239963	77	+	.	ID=2065;Type=deletion;Left=chr11:134238110-134238731;Right=chr11:134239324-134239963
chr12	CG	SV	899183	900278	11	.	.	ID=2064;Type=deletion;Left=chr12:899183-899576+;Right=chr12:900000-900278+;Distance=817;DiscordantMatePairAlignments=11;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_134424;RightGenes=NM_134424;XRef=;Frequency=0.82
chr12	CG	SV	899183	899576	11	+	.	ID=2064;Type=deletion;Left=chr12:899183-899576;Right=chr12:900000-900278
chr12	CG	SV	900000	900278	11	+	.	ID=2064;Type=deletion;Left=chr12:899183-899576;Right=chr12:900000-900278
chr12	CG	SV	1901044	1901847	28	.	.	ID=2063;Type=deletion;Left=chr12:1901044-1901512+;Right=chr12:1901514-1901847+;Distance=470;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;Tandem period 94;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr12	CG	SV	1901044	1901512	28	+	.	ID=2063;Type=deletion;Left=chr12:1901044-1901512;Right=chr12:1901514-1901847
chr12	CG	SV	1901514	1901847	28	+	.	ID=2063;Type=deletion;Left=chr12:1901044-1901512;Right=chr12:1901514-1901847
chr12	CG	SV	4952534	4953848	64	.	.	ID=2062;Type=deletion;Left=chr12:4952534-4952898+;Right=chr12:4953436-4953848+;Distance=902;DiscordantMatePairAlignments=64;LeftRepeat=Self chain;Tandem period 41;RightRepeat=Self chain;Tandem period 41;LeftGenes=;RightGenes=;XRef=rs71064124 (chr12:4952495-4953234);Frequency=1.00
chr12	CG	SV	4952534	4952898	64	+	.	ID=2062;Type=deletion;Left=chr12:4952534-4952898;Right=chr12:4953436-4953848
chr12	CG	SV	4953436	4953848	64	+	.	ID=2062;Type=deletion;Left=chr12:4952534-4952898;Right=chr12:4953436-4953848
chr12	CG	SV	8908351	8909654	43	.	.	ID=2061;Type=deletion;Left=chr12:8908351-8908965+;Right=chr12:8909378-8909654+;Distance=1027;DiscordantMatePairAlignments=43;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=NM_144670;RightGenes=NM_144670;XRef=rs72453691 (chr12:8908194-8909221);Frequency=1.00
chr12	CG	SV	8908351	8908965	43	+	.	ID=2061;Type=deletion;Left=chr12:8908351-8908965;Right=chr12:8909378-8909654
chr12	CG	SV	8909378	8909654	43	+	.	ID=2061;Type=deletion;Left=chr12:8908351-8908965;Right=chr12:8909378-8909654
chr12	CG	SV	12435717	12438169	38	.	.	ID=228;Type=distal-duplication;Left=chr12:12435717-12436120-;Right=chr12:12437889-12438169+;Distance=1769;DiscordantMatePairAlignments=38;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_058169;RightGenes=NM_058169;XRef=;Frequency=1.00
chr12	CG	SV	12435717	12436120	38	-	.	ID=228;Type=distal-duplication;Left=chr12:12435717-12436120;Right=chr12:12437889-12438169
chr12	CG	SV	12437889	12438169	38	-	.	ID=228;Type=distal-duplication;Left=chr12:12435717-12436120;Right=chr12:12437889-12438169
chr12	CG	SV	12436221	12437762	21	.	.	ID=3589;Type=distal-duplication;Left=chr12:12436221-12436580+;Right=chr12:12437446-12437762-;Distance=1541;DiscordantMatePairAlignments=21;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_058169;RightGenes=NM_058169;XRef=;Frequency=1.00
chr12	CG	SV	12436221	12436580	21	+	.	ID=3589;Type=distal-duplication;Left=chr12:12436221-12436580;Right=chr12:12437446-12437762
chr12	CG	SV	12437446	12437762	21	+	.	ID=3589;Type=distal-duplication;Left=chr12:12436221-12436580;Right=chr12:12437446-12437762
chr12	CG	SV	15459750	15465176	42	.	.	ID=2057;Type=deletion;Left=chr12:15459750-15460103+;Right=chr12:15464889-15465176+;Distance=5139;DiscordantMatePairAlignments=42;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_002848;NM_030667;RightGenes=NM_002848;NM_030667;XRef=;Frequency=0.00
chr12	CG	SV	15459750	15460103	42	+	.	ID=2057;Type=deletion;Left=chr12:15459750-15460103;Right=chr12:15464889-15465176
chr12	CG	SV	15464889	15465176	42	+	.	ID=2057;Type=deletion;Left=chr12:15459750-15460103;Right=chr12:15464889-15465176
chr12	CG	SV	16311390	16313042	103	.	.	ID=2056;Type=deletion;Left=chr12:16311390-16311793+;Right=chr12:16312550-16313042+;Distance=1160;DiscordantMatePairAlignments=103;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66519654 (chr12:16311391-16312550);Frequency=0.59
chr12	CG	SV	16311390	16311793	103	+	.	ID=2056;Type=deletion;Left=chr12:16311390-16311793;Right=chr12:16312550-16313042
chr12	CG	SV	16312550	16313042	103	+	.	ID=2056;Type=deletion;Left=chr12:16311390-16311793;Right=chr12:16312550-16313042
chr12	CG	SV	16774571	16775936	60	.	.	ID=2055;Type=deletion;Left=chr12:16774571-16775111+;Right=chr12:16775381-16775936+;Distance=810;DiscordantMatePairAlignments=60;LeftRepeat=LTR1B:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	16774571	16775111	60	+	.	ID=2055;Type=deletion;Left=chr12:16774571-16775111;Right=chr12:16775381-16775936
chr12	CG	SV	16775381	16775936	60	+	.	ID=2055;Type=deletion;Left=chr12:16774571-16775111;Right=chr12:16775381-16775936
chr12	CG	SV	17336094	17337504	32	.	.	ID=2054;Type=deletion;Left=chr12:17336094-17336534+;Right=chr12:17337206-17337504+;Distance=1112;DiscordantMatePairAlignments=32;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67412039 (chr12:17336092-17337204);Frequency=0.94
chr12	CG	SV	17336094	17336534	32	+	.	ID=2054;Type=deletion;Left=chr12:17336094-17336534;Right=chr12:17337206-17337504
chr12	CG	SV	17337206	17337504	32	+	.	ID=2054;Type=deletion;Left=chr12:17336094-17336534;Right=chr12:17337206-17337504
chr12	CG	SV	17480511	17493037	42	.	.	ID=2053;Type=deletion;Left=chr12:17480511-17481048+;Right=chr12:17492631-17493037+;Distance=12120;DiscordantMatePairAlignments=42;LeftRepeat=L1MB1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	17480511	17481048	42	+	.	ID=2053;Type=deletion;Left=chr12:17480511-17481048;Right=chr12:17492631-17493037
chr12	CG	SV	17492631	17493037	42	+	.	ID=2053;Type=deletion;Left=chr12:17480511-17481048;Right=chr12:17492631-17493037
chr12	CG	SV	20514297	20515277	66	.	.	ID=810;Type=tandem-duplication;Left=chr12:20514297-20514661-;Right=chr12:20514759-20515277-;Distance=616;DiscordantMatePairAlignments=66;LeftRepeat=;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=NM_000921;RightGenes=NM_000921;XRef=;Frequency=0.00
chr12	CG	SV	20514297	20514661	66	-	.	ID=810;Type=tandem-duplication;Left=chr12:20514297-20514661;Right=chr12:20514759-20515277
chr12	CG	SV	20514759	20515277	66	-	.	ID=810;Type=tandem-duplication;Left=chr12:20514297-20514661;Right=chr12:20514759-20515277
chr12	CG	SV	25847090	124367418	30	.	.	ID=217;Type=complex;Left=chr12:25847090-25847393-;Right=chr12:124367100-124367418+;Distance=98519707;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	25847090	25847393	30	-	.	ID=217;Type=complex;Left=chr12:25847090-25847393;Right=chr12:124367100-124367418
chr12	CG	SV	124367100	124367418	30	-	.	ID=217;Type=complex;Left=chr12:25847090-25847393;Right=chr12:124367100-124367418
chr12	CG	SV	29052943	29056401	29	.	.	ID=2047;Type=deletion;Left=chr12:29052943-29053322+;Right=chr12:29056104-29056401+;Distance=3161;DiscordantMatePairAlignments=29;LeftRepeat=MLT1B:LTR:MaLR;RightRepeat=MER93B:LTR:ERV1;Tandem period 31;LeftGenes=;RightGenes=;XRef=rs66659443 (chr12:29052943-29056085);Frequency=0.15
chr12	CG	SV	29052943	29053322	29	+	.	ID=2047;Type=deletion;Left=chr12:29052943-29053322;Right=chr12:29056104-29056401
chr12	CG	SV	29056104	29056401	29	+	.	ID=2047;Type=deletion;Left=chr12:29052943-29053322;Right=chr12:29056104-29056401
chr12	CG	SV	33715362	33716221	54	.	.	ID=2046;Type=deletion;Left=chr12:33715362-33715851+;Right=chr12:33715864-33716221+;Distance=502;DiscordantMatePairAlignments=54;LeftRepeat=AluSg:SINE:Alu;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs72133608 (chr12:33715359-33715862);Frequency=0.24
chr12	CG	SV	33715362	33715851	54	+	.	ID=2046;Type=deletion;Left=chr12:33715362-33715851;Right=chr12:33715864-33716221
chr12	CG	SV	33715864	33716221	54	+	.	ID=2046;Type=deletion;Left=chr12:33715362-33715851;Right=chr12:33715864-33716221
chr12	CG	SV	34098681	34108548	29	.	.	ID=2045;Type=deletion;Left=chr12:34098681-34099104+;Right=chr12:34108086-34108548+;Distance=9405;DiscordantMatePairAlignments=29;LeftRepeat=SegDup;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=rs71684016 (chr12:34098681-34108086);Frequency=0.00
chr12	CG	SV	34098681	34099104	29	+	.	ID=2045;Type=deletion;Left=chr12:34098681-34099104;Right=chr12:34108086-34108548
chr12	CG	SV	34108086	34108548	29	+	.	ID=2045;Type=deletion;Left=chr12:34098681-34099104;Right=chr12:34108086-34108548
chr12	CG	SV	34307707	36734520	20	.	.	ID=226;Type=probable-inversion;Left=chr12:34307707-34308190-;Right=chr12:36734182-36734520+;Distance=2425992;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr12	CG	SV	34307707	34308190	20	-	.	ID=226;Type=probable-inversion;Left=chr12:34307707-34308190;Right=chr12:36734182-36734520
chr12	CG	SV	36734182	36734520	20	-	.	ID=226;Type=probable-inversion;Left=chr12:34307707-34308190;Right=chr12:36734182-36734520
chr12	CG	SV	40524329	40525347	23	.	.	ID=2038;Type=deletion;Left=chr12:40524329-40524747+;Right=chr12:40525153-40525347+;Distance=824;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66498842 (chr12:40524320-40525144);Frequency=0.88
chr12	CG	SV	40524329	40524747	23	+	.	ID=2038;Type=deletion;Left=chr12:40524329-40524747;Right=chr12:40525153-40525347
chr12	CG	SV	40525153	40525347	23	+	.	ID=2038;Type=deletion;Left=chr12:40524329-40524747;Right=chr12:40525153-40525347
chr12	CG	SV	40984152	40986608	17	.	.	ID=2037;Type=deletion;Left=chr12:40984152-40984684+;Right=chr12:40986413-40986608+;Distance=2261;DiscordantMatePairAlignments=17;LeftRepeat=L2:LINE:L2;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr12	CG	SV	40984152	40984684	17	+	.	ID=2037;Type=deletion;Left=chr12:40984152-40984684;Right=chr12:40986413-40986608
chr12	CG	SV	40986413	40986608	17	+	.	ID=2037;Type=deletion;Left=chr12:40984152-40984684;Right=chr12:40986413-40986608
chr12	CG	SV	42263727	42266358	145	.	.	ID=2036;Type=deletion;Left=chr12:42263727-42264163+;Right=chr12:42265827-42266358+;Distance=2100;DiscordantMatePairAlignments=145;LeftRepeat=L1P1:LINE:L1;RightRepeat=LTR52:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs67022104 (chr12:42263727-42265827);Frequency=1.00
chr12	CG	SV	42263727	42264163	145	+	.	ID=2036;Type=deletion;Left=chr12:42263727-42264163;Right=chr12:42265827-42266358
chr12	CG	SV	42265827	42266358	145	+	.	ID=2036;Type=deletion;Left=chr12:42263727-42264163;Right=chr12:42265827-42266358
chr12	CG	SV	44032620	44034208	43	.	.	ID=808;Type=tandem-duplication;Left=chr12:44032620-44033084-;Right=chr12:44033989-44034208-;Distance=1124;DiscordantMatePairAlignments=43;LeftRepeat=L1MC5:LINE:L1;RightRepeat=HAL1:LINE:L1;LeftGenes=NM_001025356;NM_001142678;NM_001142679;NM_001142680;RightGenes=NM_001025356;NM_001142678;NM_001142679;NM_001142680;XRef=;Frequency=0.00
chr12	CG	SV	44032620	44033084	43	-	.	ID=808;Type=tandem-duplication;Left=chr12:44032620-44033084;Right=chr12:44033989-44034208
chr12	CG	SV	44033989	44034208	43	-	.	ID=808;Type=tandem-duplication;Left=chr12:44032620-44033084;Right=chr12:44033989-44034208
chr12	CG	SV	54288548	54291003	106	.	.	ID=2030;Type=deletion;Left=chr12:54288548-54288991+;Right=chr12:54290512-54291003+;Distance=1964;DiscordantMatePairAlignments=106;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr12	CG	SV	54288548	54288991	106	+	.	ID=2030;Type=deletion;Left=chr12:54288548-54288991;Right=chr12:54290512-54291003
chr12	CG	SV	54290512	54291003	106	+	.	ID=2030;Type=deletion;Left=chr12:54288548-54288991;Right=chr12:54290512-54291003
chr12	CG	SV	56314314	56315894	11	.	.	ID=2029;Type=deletion;Left=chr12:56314314-56314729+;Right=chr12:56315538-56315894+;Distance=1224;DiscordantMatePairAlignments=11;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr12	CG	SV	56314314	56314729	11	+	.	ID=2029;Type=deletion;Left=chr12:56314314-56314729;Right=chr12:56315538-56315894
chr12	CG	SV	56315538	56315894	11	+	.	ID=2029;Type=deletion;Left=chr12:56314314-56314729;Right=chr12:56315538-56315894
chr12	CG	SV	59039485	59044578	40	.	.	ID=2025;Type=deletion;Left=chr12:59039485-59039904+;Right=chr12:59044171-59044578+;Distance=4686;DiscordantMatePairAlignments=40;LeftRepeat=;RightRepeat=LTR8:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	59039485	59039904	40	+	.	ID=2025;Type=deletion;Left=chr12:59039485-59039904;Right=chr12:59044171-59044578
chr12	CG	SV	59044171	59044578	40	+	.	ID=2025;Type=deletion;Left=chr12:59039485-59039904;Right=chr12:59044171-59044578
chr12	CG	SV	62460509	62482350	13	.	.	ID=2022;Type=complex;Left=chr12:62460509-62460702+;Right=chr12:62482133-62482350+;Distance=21624;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=;LeftGenes=NM_014254;RightGenes=NM_014254;XRef=;Frequency=0.00
chr12	CG	SV	62460509	62460702	13	+	.	ID=2022;Type=complex;Left=chr12:62460509-62460702;Right=chr12:62482133-62482350
chr12	CG	SV	62482133	62482350	13	+	.	ID=2022;Type=complex;Left=chr12:62460509-62460702;Right=chr12:62482133-62482350
chr12	CG	SV	62482452	62489178	56	.	.	ID=2018;Type=complex;Left=chr12:62482452-62482773+;Right=chr12:62488721-62489178+;Distance=6269;DiscordantMatePairAlignments=56;LeftRepeat=;RightRepeat=;LeftGenes=NM_014254;RightGenes=NM_014254;XRef=;Frequency=0.00
chr12	CG	SV	62482452	62482773	56	+	.	ID=2018;Type=complex;Left=chr12:62482452-62482773;Right=chr12:62488721-62489178
chr12	CG	SV	62488721	62489178	56	+	.	ID=2018;Type=complex;Left=chr12:62482452-62482773;Right=chr12:62488721-62489178
chr12	CG	SV	64813915	64816656	119	.	.	ID=2017;Type=deletion;Left=chr12:64813915-64814354+;Right=chr12:64816156-64816656+;Distance=2241;DiscordantMatePairAlignments=119;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67481727 (chr12:64813918-64816159);Frequency=0.41
chr12	CG	SV	64813915	64814354	119	+	.	ID=2017;Type=deletion;Left=chr12:64813915-64814354;Right=chr12:64816156-64816656
chr12	CG	SV	64816156	64816656	119	+	.	ID=2017;Type=deletion;Left=chr12:64813915-64814354;Right=chr12:64816156-64816656
chr12	CG	SV	68881131	68884606	87	.	.	ID=2016;Type=deletion;Left=chr12:68881131-68881613+;Right=chr12:68883862-68884606+;Distance=2731;DiscordantMatePairAlignments=87;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67387579 (chr12:68881131-68883862);Frequency=0.88
chr12	CG	SV	68881131	68881613	87	+	.	ID=2016;Type=deletion;Left=chr12:68881131-68881613;Right=chr12:68883862-68884606
chr12	CG	SV	68883862	68884606	87	+	.	ID=2016;Type=deletion;Left=chr12:68881131-68881613;Right=chr12:68883862-68884606
chr12	CG	SV	69818629	69820605	73	.	.	ID=224;Type=distal-duplication;Left=chr12:69818629-69819060-;Right=chr12:69820021-69820605+;Distance=961;DiscordantMatePairAlignments=73;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_004616;RightGenes=NM_004616;XRef=;Frequency=0.65
chr12	CG	SV	69818629	69819060	73	-	.	ID=224;Type=distal-duplication;Left=chr12:69818629-69819060;Right=chr12:69820021-69820605
chr12	CG	SV	69820021	69820605	73	-	.	ID=224;Type=distal-duplication;Left=chr12:69818629-69819060;Right=chr12:69820021-69820605
chr12	CG	SV	69819545	69820019	69	.	.	ID=3584;Type=distal-duplication;Left=chr12:69819545-69820034+;Right=chr12:69819484-69820019-;Distance=474;DiscordantMatePairAlignments=69;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_004616;RightGenes=NM_004616;XRef=;Frequency=0.65
chr12	CG	SV	69819545	69820034	69	+	.	ID=3584;Type=distal-duplication;Left=chr12:69819545-69820034;Right=chr12:69819484-69820019
chr12	CG	SV	69819484	69820019	69	+	.	ID=3584;Type=distal-duplication;Left=chr12:69819545-69820034;Right=chr12:69819484-69820019
chr12	CG	SV	70508294	70509315	36	.	.	ID=2014;Type=deletion;Left=chr12:70508294-70508786+;Right=chr12:70509033-70509315+;Distance=739;DiscordantMatePairAlignments=36;LeftRepeat=L1MD2:LINE:L1;RightRepeat=L1MB3:LINE:L1;L1MD2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	70508294	70508786	36	+	.	ID=2014;Type=deletion;Left=chr12:70508294-70508786;Right=chr12:70509033-70509315
chr12	CG	SV	70509033	70509315	36	+	.	ID=2014;Type=deletion;Left=chr12:70508294-70508786;Right=chr12:70509033-70509315
chr12	CG	SV	70642936	70644812	48	.	.	ID=2013;Type=deletion;Left=chr12:70642936-70643465+;Right=chr12:70644500-70644812+;Distance=1564;DiscordantMatePairAlignments=48;LeftRepeat=AluSg/x:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Tandem period 9;LeftGenes=NM_173353;RightGenes=NM_173353;XRef=rs71042195 (chr12:70642884-70644448);Frequency=1.00
chr12	CG	SV	70642936	70643465	48	+	.	ID=2013;Type=deletion;Left=chr12:70642936-70643465;Right=chr12:70644500-70644812
chr12	CG	SV	70644500	70644812	48	+	.	ID=2013;Type=deletion;Left=chr12:70642936-70643465;Right=chr12:70644500-70644812
chr12	CG	SV	76623150	76625051	45	.	.	ID=2011;Type=deletion;Left=chr12:76623150-76623588+;Right=chr12:76624871-76625051+;Distance=1721;DiscordantMatePairAlignments=45;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	76623150	76623588	45	+	.	ID=2011;Type=deletion;Left=chr12:76623150-76623588;Right=chr12:76624871-76625051
chr12	CG	SV	76624871	76625051	45	+	.	ID=2011;Type=deletion;Left=chr12:76623150-76623588;Right=chr12:76624871-76625051
chr12	CG	SV	76908009	76912361	34	.	.	ID=3583;Type=distal-duplication;Left=chr12:76908009-76908499+;Right=chr12:76911978-76912361-;Distance=4352;DiscordantMatePairAlignments=34;LeftRepeat=LOR1a:LTR:ERV1;RightRepeat=;LeftGenes=NM_014903;RightGenes=NM_014903;XRef=;Frequency=0.29
chr12	CG	SV	76908009	76908499	34	+	.	ID=3583;Type=distal-duplication;Left=chr12:76908009-76908499;Right=chr12:76911978-76912361
chr12	CG	SV	76911978	76912361	34	+	.	ID=3583;Type=distal-duplication;Left=chr12:76908009-76908499;Right=chr12:76911978-76912361
chr12	CG	SV	76907585	76912332	54	.	.	ID=223;Type=distal-duplication;Left=chr12:76907585-76908020-;Right=chr12:76911977-76912332+;Distance=3957;DiscordantMatePairAlignments=54;LeftRepeat=LOR1a:LTR:ERV1;RightRepeat=;LeftGenes=NM_014903;RightGenes=NM_014903;XRef=;Frequency=0.29
chr12	CG	SV	76907585	76908020	54	-	.	ID=223;Type=distal-duplication;Left=chr12:76907585-76908020;Right=chr12:76911977-76912332
chr12	CG	SV	76911977	76912332	54	-	.	ID=223;Type=distal-duplication;Left=chr12:76907585-76908020;Right=chr12:76911977-76912332
chr12	CG	SV	78960072	78963129	81	.	.	ID=2009;Type=deletion;Left=chr12:78960072-78960550+;Right=chr12:78962670-78963129+;Distance=2598;DiscordantMatePairAlignments=81;LeftRepeat=Charlie1a:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	78960072	78960550	81	+	.	ID=2009;Type=deletion;Left=chr12:78960072-78960550;Right=chr12:78962670-78963129
chr12	CG	SV	78962670	78963129	81	+	.	ID=2009;Type=deletion;Left=chr12:78960072-78960550;Right=chr12:78962670-78963129
chr12	CG	SV	80739579	80749955	68	.	.	ID=2008;Type=deletion;Left=chr12:80739579-80740056+;Right=chr12:80749494-80749955+;Distance=9915;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	80739579	80740056	68	+	.	ID=2008;Type=deletion;Left=chr12:80739579-80740056;Right=chr12:80749494-80749955
chr12	CG	SV	80749494	80749955	68	+	.	ID=2008;Type=deletion;Left=chr12:80739579-80740056;Right=chr12:80749494-80749955
chr12	CG	SV	82368186	82369242	93	.	.	ID=2007;Type=deletion;Left=chr12:82368186-82368647+;Right=chr12:82368750-82369242+;Distance=564;DiscordantMatePairAlignments=93;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66762260 (chr12:82368175-82368739);Frequency=0.82
chr12	CG	SV	82368186	82368647	93	+	.	ID=2007;Type=deletion;Left=chr12:82368186-82368647;Right=chr12:82368750-82369242
chr12	CG	SV	82368750	82369242	93	+	.	ID=2007;Type=deletion;Left=chr12:82368186-82368647;Right=chr12:82368750-82369242
chr12	CG	SV	83117245	83120658	34	.	.	ID=2006;Type=deletion;Left=chr12:83117245-83117566+;Right=chr12:83120148-83120658+;Distance=2903;DiscordantMatePairAlignments=34;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72045293 (chr12:83117245-83120148);Frequency=0.71
chr12	CG	SV	83117245	83117566	34	+	.	ID=2006;Type=deletion;Left=chr12:83117245-83117566;Right=chr12:83120148-83120658
chr12	CG	SV	83120148	83120658	34	+	.	ID=2006;Type=deletion;Left=chr12:83117245-83117566;Right=chr12:83120148-83120658
chr12	CG	SV	85934557	85952272	94	.	.	ID=2005;Type=deletion;Left=chr12:85934557-85934956+;Right=chr12:85951826-85952272+;Distance=17269;DiscordantMatePairAlignments=94;LeftRepeat=L1MA9:LINE:L1;RightRepeat=MSTB2:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	85934557	85934956	94	+	.	ID=2005;Type=deletion;Left=chr12:85934557-85934956;Right=chr12:85951826-85952272
chr12	CG	SV	85951826	85952272	94	+	.	ID=2005;Type=deletion;Left=chr12:85934557-85934956;Right=chr12:85951826-85952272
chr12	CG	SV	89414470	89423825	24	.	.	ID=2004;Type=deletion;Left=chr12:89414470-89414897+;Right=chr12:89423320-89423825+;Distance=8850;DiscordantMatePairAlignments=24;LeftRepeat=L1P4:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	89414470	89414897	24	+	.	ID=2004;Type=deletion;Left=chr12:89414470-89414897;Right=chr12:89423320-89423825
chr12	CG	SV	89423320	89423825	24	+	.	ID=2004;Type=deletion;Left=chr12:89414470-89414897;Right=chr12:89423320-89423825
chr12	CG	SV	91160962	91175082	82	.	.	ID=2003;Type=deletion;Left=chr12:91160962-91161370+;Right=chr12:91174533-91175082+;Distance=13571;DiscordantMatePairAlignments=82;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	91160962	91161370	82	+	.	ID=2003;Type=deletion;Left=chr12:91160962-91161370;Right=chr12:91174533-91175082
chr12	CG	SV	91174533	91175082	82	+	.	ID=2003;Type=deletion;Left=chr12:91160962-91161370;Right=chr12:91174533-91175082
chr12	CG	SV	94534587	94537058	31	.	.	ID=1999;Type=deletion;Left=chr12:94534587-94535057+;Right=chr12:94536548-94537058+;Distance=1961;DiscordantMatePairAlignments=31;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr12	CG	SV	94534587	94535057	31	+	.	ID=1999;Type=deletion;Left=chr12:94534587-94535057;Right=chr12:94536548-94537058
chr12	CG	SV	94536548	94537058	31	+	.	ID=1999;Type=deletion;Left=chr12:94534587-94535057;Right=chr12:94536548-94537058
chr12	CG	SV	94757723	94760931	20	.	.	ID=1998;Type=deletion;Left=chr12:94757723-94758262+;Right=chr12:94760469-94760931+;Distance=2746;DiscordantMatePairAlignments=20;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66521162 (chr12:94757723-94760469);Frequency=0.94
chr12	CG	SV	94757723	94758262	20	+	.	ID=1998;Type=deletion;Left=chr12:94757723-94758262;Right=chr12:94760469-94760931
chr12	CG	SV	94760469	94760931	20	+	.	ID=1998;Type=deletion;Left=chr12:94757723-94758262;Right=chr12:94760469-94760931
chr12	CG	SV	94864478	94867638	174	.	.	ID=1997;Type=deletion;Left=chr12:94864478-94865121+;Right=chr12:94867087-94867638+;Distance=2609;DiscordantMatePairAlignments=174;LeftRepeat=;RightRepeat=;LeftGenes=NM_152435;RightGenes=NM_152435;XRef=rs71045007 (chr12:94864486-94867095);Frequency=0.88
chr12	CG	SV	94864478	94865121	174	+	.	ID=1997;Type=deletion;Left=chr12:94864478-94865121;Right=chr12:94867087-94867638
chr12	CG	SV	94867087	94867638	174	+	.	ID=1997;Type=deletion;Left=chr12:94864478-94865121;Right=chr12:94867087-94867638
chr12	CG	SV	96078872	96079714	10	.	.	ID=1991;Type=deletion;Left=chr12:96078872-96079418+;Right=chr12:96079200-96079714+;Distance=328;DiscordantMatePairAlignments=10;LeftRepeat=L2:LINE:L2;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs72227255 (chr12:96078858-96079186);Frequency=1.00
chr12	CG	SV	96078872	96079418	10	+	.	ID=1991;Type=deletion;Left=chr12:96078872-96079418;Right=chr12:96079200-96079714
chr12	CG	SV	96079200	96079714	10	+	.	ID=1991;Type=deletion;Left=chr12:96078872-96079418;Right=chr12:96079200-96079714
chr12	CG	SV	100280435	100281562	91	.	.	ID=1989;Type=deletion;Left=chr12:100280435-100280924+;Right=chr12:100281089-100281562+;Distance=654;DiscordantMatePairAlignments=91;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_014503;RightGenes=NM_014503;XRef=rs71929673 (chr12:100280434-100281088);Frequency=0.12
chr12	CG	SV	100280435	100280924	91	+	.	ID=1989;Type=deletion;Left=chr12:100280435-100280924;Right=chr12:100281089-100281562
chr12	CG	SV	100281089	100281562	91	+	.	ID=1989;Type=deletion;Left=chr12:100280435-100280924;Right=chr12:100281089-100281562
chr12	CG	SV	102883584	124367558	26	.	.	ID=214;Type=complex;Left=chr12:102883584-102883759-;Right=chr12:124367100-124367558+;Distance=21483341;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_003211;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	102883584	102883759	26	-	.	ID=214;Type=complex;Left=chr12:102883584-102883759;Right=chr12:124367100-124367558
chr12	CG	SV	124367100	124367558	26	-	.	ID=214;Type=complex;Left=chr12:102883584-102883759;Right=chr12:124367100-124367558
chr12	CG	SV	102906672	124367117	11	.	.	ID=3577;Type=complex;Left=chr12:102906672-102906886+;Right=chr12:124366692-124367117-;Distance=21460445;DiscordantMatePairAlignments=11;LeftRepeat=SegDup;Self chain;RightRepeat=L2:LINE:L2;LeftGenes=NM_003211;RightGenes=;XRef=;Frequency=0.76
chr12	CG	SV	102906672	102906886	11	+	.	ID=3577;Type=complex;Left=chr12:102906672-102906886;Right=chr12:124366692-124367117
chr12	CG	SV	124366692	124367117	11	+	.	ID=3577;Type=complex;Left=chr12:102906672-102906886;Right=chr12:124366692-124367117
chr12	CG	SV	104297655	104298511	14	.	.	ID=1987;Type=deletion;Left=chr12:104297655-104298189+;Right=chr12:104297979-104298511+;Distance=324;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs67574174 (chr12:104297655-104297979);Frequency=0.88
chr12	CG	SV	104297655	104298189	14	+	.	ID=1987;Type=deletion;Left=chr12:104297655-104298189;Right=chr12:104297979-104298511
chr12	CG	SV	104297979	104298511	14	+	.	ID=1987;Type=deletion;Left=chr12:104297655-104298189;Right=chr12:104297979-104298511
chr12	CG	SV	109100585	109102349	22	.	.	ID=222;Type=probable-inversion;Left=chr12:109100585-109100971-;Right=chr12:109102205-109102349+;Distance=1234;DiscordantMatePairAlignments=22;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_001143779;NM_014055;RightGenes=NM_001143779;NM_014055;XRef=;Frequency=1.00
chr12	CG	SV	109100585	109100971	22	-	.	ID=222;Type=probable-inversion;Left=chr12:109100585-109100971;Right=chr12:109102205-109102349
chr12	CG	SV	109102205	109102349	22	-	.	ID=222;Type=probable-inversion;Left=chr12:109100585-109100971;Right=chr12:109102205-109102349
chr12	CG	SV	111503904	111505407	50	.	.	ID=1986;Type=deletion;Left=chr12:111503904-111504204+;Right=chr12:111504966-111505407+;Distance=1062;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr12	CG	SV	111503904	111504204	50	+	.	ID=1986;Type=deletion;Left=chr12:111503904-111504204;Right=chr12:111504966-111505407
chr12	CG	SV	111504966	111505407	50	+	.	ID=1986;Type=deletion;Left=chr12:111503904-111504204;Right=chr12:111504966-111505407
chr12	CG	SV	114561908	114564675	27	.	.	ID=1985;Type=deletion;Left=chr12:114561908-114561992+;Right=chr12:114564288-114564675+;Distance=2380;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67352178 (chr12:114561908-114564286);Frequency=0.53
chr12	CG	SV	114561908	114561992	27	+	.	ID=1985;Type=deletion;Left=chr12:114561908-114561992;Right=chr12:114564288-114564675
chr12	CG	SV	114564288	114564675	27	+	.	ID=1985;Type=deletion;Left=chr12:114561908-114561992;Right=chr12:114564288-114564675
chr12	CG	SV	117531553	117533922	83	.	.	ID=1984;Type=deletion;Left=chr12:117531553-117532039+;Right=chr12:117533449-117533922+;Distance=1896;DiscordantMatePairAlignments=83;LeftRepeat=GA-rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	117531553	117532039	83	+	.	ID=1984;Type=deletion;Left=chr12:117531553-117532039;Right=chr12:117533449-117533922
chr12	CG	SV	117533449	117533922	83	+	.	ID=1984;Type=deletion;Left=chr12:117531553-117532039;Right=chr12:117533449-117533922
chr12	CG	SV	131452469	131453162	26	.	.	ID=1976;Type=deletion;Left=chr12:131452469-131453006+;Right=chr12:131452823-131453162+;Distance=354;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;Tandem period 118;Tandem period 59;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr12	CG	SV	131452469	131453006	26	+	.	ID=1976;Type=deletion;Left=chr12:131452469-131453006;Right=chr12:131452823-131453162
chr12	CG	SV	131452823	131453162	26	+	.	ID=1976;Type=deletion;Left=chr12:131452469-131453006;Right=chr12:131452823-131453162
chr13	CG	SV	21316272	21320233	21	.	.	ID=1974;Type=deletion;Left=chr13:21316272-21316815+;Right=chr13:21320071-21320233+;Distance=3799;DiscordantMatePairAlignments=21;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	21316272	21316815	21	+	.	ID=1974;Type=deletion;Left=chr13:21316272-21316815;Right=chr13:21320071-21320233
chr13	CG	SV	21320071	21320233	21	+	.	ID=1974;Type=deletion;Left=chr13:21316272-21316815;Right=chr13:21320071-21320233
chr13	CG	SV	25347367	25348323	34	.	.	ID=1971;Type=deletion;Left=chr13:25347367-25347820+;Right=chr13:25347881-25348323+;Distance=514;DiscordantMatePairAlignments=34;LeftRepeat=L1MB2:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_016529;RightGenes=NM_016529;XRef=;Frequency=0.00
chr13	CG	SV	25347367	25347820	34	+	.	ID=1971;Type=deletion;Left=chr13:25347367-25347820;Right=chr13:25347881-25348323
chr13	CG	SV	25347881	25348323	34	+	.	ID=1971;Type=deletion;Left=chr13:25347367-25347820;Right=chr13:25347881-25348323
chr13	CG	SV	28648832	28650147	78	.	.	ID=1969;Type=deletion;Left=chr13:28648832-28649359+;Right=chr13:28649683-28650147+;Distance=851;DiscordantMatePairAlignments=78;LeftRepeat=MLT1A0:LTR:MaLR;Self chain;RightRepeat=Self chain;LeftGenes=NM_001033602;RightGenes=NM_001033602;XRef=rs72248166 (chr13:28648830-28649681);Frequency=0.00
chr13	CG	SV	28648832	28649359	78	+	.	ID=1969;Type=deletion;Left=chr13:28648832-28649359;Right=chr13:28649683-28650147
chr13	CG	SV	28649683	28650147	78	+	.	ID=1969;Type=deletion;Left=chr13:28648832-28649359;Right=chr13:28649683-28650147
chr13	CG	SV	28789572	28790390	12	.	.	ID=1968;Type=deletion;Left=chr13:28789572-28789997+;Right=chr13:28789883-28790390+;Distance=311;DiscordantMatePairAlignments=12;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_001033602;RightGenes=NM_001033602;XRef=rs68105323 (chr13:28789572-28789883);Frequency=1.00
chr13	CG	SV	28789572	28789997	12	+	.	ID=1968;Type=deletion;Left=chr13:28789572-28789997;Right=chr13:28789883-28790390
chr13	CG	SV	28789883	28790390	12	+	.	ID=1968;Type=deletion;Left=chr13:28789572-28789997;Right=chr13:28789883-28790390
chr13	CG	SV	31430648	31437232	33	.	.	ID=1967;Type=deletion;Left=chr13:31430648-31431000+;Right=chr13:31436805-31437232+;Distance=6157;DiscordantMatePairAlignments=33;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=NR_027062;RightGenes=;XRef=rs67927314 (chr13:31430644-31436801);Frequency=0.18
chr13	CG	SV	31430648	31431000	33	+	.	ID=1967;Type=deletion;Left=chr13:31430648-31431000;Right=chr13:31436805-31437232
chr13	CG	SV	31436805	31437232	33	+	.	ID=1967;Type=deletion;Left=chr13:31430648-31431000;Right=chr13:31436805-31437232
chr13	CG	SV	37581203	37582723	31	.	.	ID=1962;Type=deletion;Left=chr13:37581203-37581612+;Right=chr13:37582384-37582723+;Distance=1181;DiscordantMatePairAlignments=31;LeftRepeat=L1PA15:LINE:L1;RightRepeat=L1PA15:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	37581203	37581612	31	+	.	ID=1962;Type=deletion;Left=chr13:37581203-37581612;Right=chr13:37582384-37582723
chr13	CG	SV	37582384	37582723	31	+	.	ID=1962;Type=deletion;Left=chr13:37581203-37581612;Right=chr13:37582384-37582723
chr13	CG	SV	41844880	41845652	129	.	.	ID=792;Type=tandem-duplication;Left=chr13:41844880-41845268-;Right=chr13:41845278-41845652-;Distance=384;DiscordantMatePairAlignments=129;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr13	CG	SV	41844880	41845268	129	-	.	ID=792;Type=tandem-duplication;Left=chr13:41844880-41845268;Right=chr13:41845278-41845652
chr13	CG	SV	41845278	41845652	129	-	.	ID=792;Type=tandem-duplication;Left=chr13:41844880-41845268;Right=chr13:41845278-41845652
chr13	CG	SV	42437809	42440143	107	.	.	ID=1959;Type=deletion;Left=chr13:42437809-42438221+;Right=chr13:42439462-42440143+;Distance=1653;DiscordantMatePairAlignments=107;LeftRepeat=(TCTCCC)n:Simple_repeat:Simple_repeat;Tandem TCCCTC;RightRepeat=;LeftGenes=NM_001002264;NM_033255;RightGenes=NM_001002264;NM_033255;XRef=rs67713275 (chr13:42437794-42439447);Frequency=0.82
chr13	CG	SV	42437809	42438221	107	+	.	ID=1959;Type=deletion;Left=chr13:42437809-42438221;Right=chr13:42439462-42440143
chr13	CG	SV	42439462	42440143	107	+	.	ID=1959;Type=deletion;Left=chr13:42437809-42438221;Right=chr13:42439462-42440143
chr13	CG	SV	44903461	44904115	18	.	.	ID=1957;Type=deletion;Left=chr13:44903461-44904010+;Right=chr13:44903792-44904115+;Distance=331;DiscordantMatePairAlignments=18;LeftRepeat=(CAAAA)n:Simple_repeat:Simple_repeat;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	44903461	44904010	18	+	.	ID=1957;Type=deletion;Left=chr13:44903461-44904010;Right=chr13:44903792-44904115
chr13	CG	SV	44903792	44904115	18	+	.	ID=1957;Type=deletion;Left=chr13:44903461-44904010;Right=chr13:44903792-44904115
chr13	CG	SV	48849414	48852114	19	.	.	ID=1953;Type=deletion;Left=chr13:48849414-48849769+;Right=chr13:48851875-48852114+;Distance=2461;DiscordantMatePairAlignments=19;LeftRepeat=LTR9B:LTR:ERV1;RightRepeat=;LeftGenes=NM_001079670;NM_030925;RightGenes=NM_001079670;NM_030925;XRef=rs71706803 (chr13:48849402-48851863);Frequency=0.59
chr13	CG	SV	48849414	48849769	19	+	.	ID=1953;Type=deletion;Left=chr13:48849414-48849769;Right=chr13:48851875-48852114
chr13	CG	SV	48851875	48852114	19	+	.	ID=1953;Type=deletion;Left=chr13:48849414-48849769;Right=chr13:48851875-48852114
chr13	CG	SV	49967351	49973469	116	.	.	ID=1952;Type=deletion;Left=chr13:49967351-49967790+;Right=chr13:49973083-49973469+;Distance=5732;DiscordantMatePairAlignments=116;LeftRepeat=Self chain;RightRepeat=MSTB-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67883993 (chr13:49967351-49973083);Frequency=0.94
chr13	CG	SV	49967351	49967790	116	+	.	ID=1952;Type=deletion;Left=chr13:49967351-49967790;Right=chr13:49973083-49973469
chr13	CG	SV	49973083	49973469	116	+	.	ID=1952;Type=deletion;Left=chr13:49967351-49967790;Right=chr13:49973083-49973469
chr13	CG	SV	56650541	56687246	75	.	.	ID=1950;Type=deletion;Left=chr13:56650541-56651038+;Right=chr13:56686867-56687246+;Distance=36326;DiscordantMatePairAlignments=75;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr13	CG	SV	56650541	56651038	75	+	.	ID=1950;Type=deletion;Left=chr13:56650541-56651038;Right=chr13:56686867-56687246
chr13	CG	SV	56686867	56687246	75	+	.	ID=1950;Type=deletion;Left=chr13:56650541-56651038;Right=chr13:56686867-56687246
chr13	CG	SV	62503489	62504104	39	.	.	ID=210;Type=probable-inversion;Left=chr13:62503489-62503564-;Right=chr13:62503671-62504104+;Distance=107;DiscordantMatePairAlignments=39;LeftRepeat=L2:LINE:L2;SegDup;RightRepeat=L2:LINE:L2;SegDup;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	62503489	62503564	39	-	.	ID=210;Type=probable-inversion;Left=chr13:62503489-62503564;Right=chr13:62503671-62504104
chr13	CG	SV	62503671	62504104	39	-	.	ID=210;Type=probable-inversion;Left=chr13:62503489-62503564;Right=chr13:62503671-62504104
chr13	CG	SV	72972922	72973812	14	.	.	ID=1943;Type=deletion;Left=chr13:72972922-72973488+;Right=chr13:72973250-72973812+;Distance=328;DiscordantMatePairAlignments=14;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10704972 (chr13:72972922-72973250);Frequency=0.94
chr13	CG	SV	72972922	72973488	14	+	.	ID=1943;Type=deletion;Left=chr13:72972922-72973488;Right=chr13:72973250-72973812
chr13	CG	SV	72973250	72973812	14	+	.	ID=1943;Type=deletion;Left=chr13:72972922-72973488;Right=chr13:72973250-72973812
chr13	CG	SV	75004630	75017610	13	.	.	ID=791;Type=tandem-duplication;Left=chr13:75004630-75005070-;Right=chr13:75017488-75017610-;Distance=12540;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_203495;NM_203497;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	75004630	75005070	13	-	.	ID=791;Type=tandem-duplication;Left=chr13:75004630-75005070;Right=chr13:75017488-75017610
chr13	CG	SV	75017488	75017610	13	-	.	ID=791;Type=tandem-duplication;Left=chr13:75004630-75005070;Right=chr13:75017488-75017610
chr13	CG	SV	77069271	77070771	63	.	.	ID=1942;Type=deletion;Left=chr13:77069271-77069654+;Right=chr13:77070189-77070771+;Distance=918;DiscordantMatePairAlignments=63;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=NM_001160706;NM_003843;NM_144777;RightGenes=NM_001160706;NM_003843;NM_144777;XRef=;Frequency=0.00
chr13	CG	SV	77069271	77069654	63	+	.	ID=1942;Type=deletion;Left=chr13:77069271-77069654;Right=chr13:77070189-77070771
chr13	CG	SV	77070189	77070771	63	+	.	ID=1942;Type=deletion;Left=chr13:77069271-77069654;Right=chr13:77070189-77070771
chr13	CG	SV	80703812	80713311	35	.	.	ID=1940;Type=deletion;Left=chr13:80703812-80704225+;Right=chr13:80712941-80713311+;Distance=9129;DiscordantMatePairAlignments=35;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr13	CG	SV	80703812	80704225	35	+	.	ID=1940;Type=deletion;Left=chr13:80703812-80704225;Right=chr13:80712941-80713311
chr13	CG	SV	80712941	80713311	35	+	.	ID=1940;Type=deletion;Left=chr13:80703812-80704225;Right=chr13:80712941-80713311
chr13	CG	SV	81254873	81254960	14	.	.	ID=3570;Type=inversion;Left=chr13:81254873-81255444+;Right=chr13:81254877-81254960-;Distance=87;DiscordantMatePairAlignments=14;LeftRepeat=HERVL40:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	81254873	81255444	14	+	.	ID=3570;Type=inversion;Left=chr13:81254873-81255444;Right=chr13:81254877-81254960
chr13	CG	SV	81254877	81254960	14	+	.	ID=3570;Type=inversion;Left=chr13:81254873-81255444;Right=chr13:81254877-81254960
chr13	CG	SV	81254789	81255492	18	.	.	ID=209;Type=inversion;Left=chr13:81254789-81254877-;Right=chr13:81254977-81255492+;Distance=100;DiscordantMatePairAlignments=18;LeftRepeat=HERVL40:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	81254789	81254877	18	-	.	ID=209;Type=inversion;Left=chr13:81254789-81254877;Right=chr13:81254977-81255492
chr13	CG	SV	81254977	81255492	18	-	.	ID=209;Type=inversion;Left=chr13:81254789-81254877;Right=chr13:81254977-81255492
chr13	CG	SV	90700213	90702803	88	.	.	ID=1937;Type=deletion;Left=chr13:90700213-90700624+;Right=chr13:90702312-90702803+;Distance=2099;DiscordantMatePairAlignments=88;LeftRepeat=THE1D:LTR:MaLR;RightRepeat=MER91B:DNA:Tip100;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	90700213	90700624	88	+	.	ID=1937;Type=deletion;Left=chr13:90700213-90700624;Right=chr13:90702312-90702803
chr13	CG	SV	90702312	90702803	88	+	.	ID=1937;Type=deletion;Left=chr13:90700213-90700624;Right=chr13:90702312-90702803
chr13	CG	SV	94818321	94822959	52	.	.	ID=1934;Type=deletion;Left=chr13:94818321-94818800+;Right=chr13:94822558-94822959+;Distance=4237;DiscordantMatePairAlignments=52;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	94818321	94818800	52	+	.	ID=1934;Type=deletion;Left=chr13:94818321-94818800;Right=chr13:94822558-94822959
chr13	CG	SV	94822558	94822959	52	+	.	ID=1934;Type=deletion;Left=chr13:94818321-94818800;Right=chr13:94822558-94822959
chr13	CG	SV	97302576	97303296	15	.	.	ID=790;Type=tandem-duplication;Left=chr13:97302576-97302931-;Right=chr13:97303060-97303296-;Distance=365;DiscordantMatePairAlignments=15;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Tandem TGGA;RightRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Tandem GATG;Tandem period 12;Tandem period 8;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr13	CG	SV	97302576	97302931	15	-	.	ID=790;Type=tandem-duplication;Left=chr13:97302576-97302931;Right=chr13:97303060-97303296
chr13	CG	SV	97303060	97303296	15	-	.	ID=790;Type=tandem-duplication;Left=chr13:97302576-97302931;Right=chr13:97303060-97303296
chr13	CG	SV	100692147	100694800	10	.	.	ID=1932;Type=deletion;Left=chr13:100692147-100692537+;Right=chr13:100694428-100694800+;Distance=2281;DiscordantMatePairAlignments=10;LeftRepeat=L1MEd:LINE:L1;RightRepeat=;LeftGenes=NM_052867;RightGenes=NM_052867;XRef=rs66850763 (chr13:100692144-100694425);Frequency=0.82
chr13	CG	SV	100692147	100692537	10	+	.	ID=1932;Type=deletion;Left=chr13:100692147-100692537;Right=chr13:100694428-100694800
chr13	CG	SV	100694428	100694800	10	+	.	ID=1932;Type=deletion;Left=chr13:100692147-100692537;Right=chr13:100694428-100694800
chr13	CG	SV	102889766	102890577	16	.	.	ID=1929;Type=deletion;Left=chr13:102889766-102890369+;Right=chr13:102890248-102890577+;Distance=482;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66819995 (chr13:102889765-102890247);Frequency=1.00
chr13	CG	SV	102889766	102890369	16	+	.	ID=1929;Type=deletion;Left=chr13:102889766-102890369;Right=chr13:102890248-102890577
chr13	CG	SV	102890248	102890577	16	+	.	ID=1929;Type=deletion;Left=chr13:102889766-102890369;Right=chr13:102890248-102890577
chr13	CG	SV	105247324	105248339	24	.	.	ID=1927;Type=deletion;Left=chr13:105247324-105247910+;Right=chr13:105247922-105248339+;Distance=598;DiscordantMatePairAlignments=24;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr13	CG	SV	105247324	105247910	24	+	.	ID=1927;Type=deletion;Left=chr13:105247324-105247910;Right=chr13:105247922-105248339
chr13	CG	SV	105247922	105248339	24	+	.	ID=1927;Type=deletion;Left=chr13:105247324-105247910;Right=chr13:105247922-105248339
chr13	CG	SV	109215948	109217348	13	.	.	ID=1926;Type=deletion;Left=chr13:109215948-109216295+;Right=chr13:109217173-109217348+;Distance=1225;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 49;RightRepeat=;LeftGenes=NM_003749;RightGenes=NM_003749;XRef=;Frequency=0.88
chr13	CG	SV	109215948	109216295	13	+	.	ID=1926;Type=deletion;Left=chr13:109215948-109216295;Right=chr13:109217173-109217348
chr13	CG	SV	109217173	109217348	13	+	.	ID=1926;Type=deletion;Left=chr13:109215948-109216295;Right=chr13:109217173-109217348
chr13	CG	SV	111071642	111072790	23	.	.	ID=1923;Type=deletion;Left=chr13:111071642-111072084+;Right=chr13:111072255-111072790+;Distance=613;DiscordantMatePairAlignments=23;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Tandem TG;Tandem period 11;Tandem period 13;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;Tandem TG;Tandem period 11;Tandem period 13;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	111071642	111072084	23	+	.	ID=1923;Type=deletion;Left=chr13:111071642-111072084;Right=chr13:111072255-111072790
chr13	CG	SV	111072255	111072790	23	+	.	ID=1923;Type=deletion;Left=chr13:111071642-111072084;Right=chr13:111072255-111072790
chr13	CG	SV	112547678	112548651	27	.	.	ID=1920;Type=deletion;Left=chr13:112547678-112548217+;Right=chr13:112548182-112548651+;Distance=504;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;Tandem period 31;Tandem period 32;Tandem period 63;RightRepeat=Self chain;Tandem period 31;LeftGenes=NM_015205;NM_032189;RightGenes=NM_015205;NM_032189;XRef=rs67550026 (chr13:112547585-112548182);Frequency=0.47
chr13	CG	SV	112547678	112548217	27	+	.	ID=1920;Type=deletion;Left=chr13:112547678-112548217;Right=chr13:112548182-112548651
chr13	CG	SV	112548182	112548651	27	+	.	ID=1920;Type=deletion;Left=chr13:112547678-112548217;Right=chr13:112548182-112548651
chr13	CG	SV	114008694	114010436	87	.	.	ID=1918;Type=deletion;Left=chr13:114008694-114009193+;Right=chr13:114009982-114010436+;Distance=1288;DiscordantMatePairAlignments=87;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr13	CG	SV	114008694	114009193	87	+	.	ID=1918;Type=deletion;Left=chr13:114008694-114009193;Right=chr13:114009982-114010436
chr13	CG	SV	114009982	114010436	87	+	.	ID=1918;Type=deletion;Left=chr13:114008694-114009193;Right=chr13:114009982-114010436
chr14	CG	SV	21022464	21024802	25	.	.	ID=1916;Type=deletion;Left=chr14:21022464-21022786+;Right=chr14:21024502-21024802+;Distance=2038;DiscordantMatePairAlignments=25;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=NM_014828;RightGenes=NM_014828;XRef=rs72394824 (chr14:21022464-21024501);Frequency=0.82
chr14	CG	SV	21022464	21022786	25	+	.	ID=1916;Type=deletion;Left=chr14:21022464-21022786;Right=chr14:21024502-21024802
chr14	CG	SV	21024502	21024802	25	+	.	ID=1916;Type=deletion;Left=chr14:21022464-21022786;Right=chr14:21024502-21024802
chr14	CG	SV	21119363	21128835	44	.	.	ID=787;Type=tandem-duplication;Left=chr14:21119363-21119793-;Right=chr14:21128533-21128835-;Distance=9042;DiscordantMatePairAlignments=44;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr14	CG	SV	21119363	21119793	44	-	.	ID=787;Type=tandem-duplication;Left=chr14:21119363-21119793;Right=chr14:21128533-21128835
chr14	CG	SV	21128533	21128835	44	-	.	ID=787;Type=tandem-duplication;Left=chr14:21119363-21119793;Right=chr14:21128533-21128835
chr14	CG	SV	22164710	22169032	30	.	.	ID=1915;Type=deletion;Left=chr14:22164710-22164895+;Right=chr14:22168524-22169032+;Distance=3814;DiscordantMatePairAlignments=30;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=MER50B:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs66508311 (chr14:22164706-22168520);Frequency=0.06
chr14	CG	SV	22164710	22164895	30	+	.	ID=1915;Type=deletion;Left=chr14:22164710-22164895;Right=chr14:22168524-22169032
chr14	CG	SV	22168524	22169032	30	+	.	ID=1915;Type=deletion;Left=chr14:22164710-22164895;Right=chr14:22168524-22169032
chr14	CG	SV	22174958	22177932	40	.	.	ID=1914;Type=complex;Left=chr14:22174958-22175360+;Right=chr14:22177793-22177932+;Distance=2835;DiscordantMatePairAlignments=40;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr14	CG	SV	22174958	22175360	40	+	.	ID=1914;Type=complex;Left=chr14:22174958-22175360;Right=chr14:22177793-22177932
chr14	CG	SV	22177793	22177932	40	+	.	ID=1914;Type=complex;Left=chr14:22174958-22175360;Right=chr14:22177793-22177932
chr14	CG	SV	22174969	22179306	30	.	.	ID=1913;Type=complex;Left=chr14:22174969-22175331+;Right=chr14:22179110-22179306+;Distance=4141;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;RightRepeat=SVA:Other:Other;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr14	CG	SV	22174969	22175331	30	+	.	ID=1913;Type=complex;Left=chr14:22174969-22175331;Right=chr14:22179110-22179306
chr14	CG	SV	22179110	22179306	30	+	.	ID=1913;Type=complex;Left=chr14:22174969-22175331;Right=chr14:22179110-22179306
chr14	CG	SV	25660799	25662640	122	.	.	ID=1909;Type=deletion;Left=chr14:25660799-25661394+;Right=chr14:25662232-25662640+;Distance=1433;DiscordantMatePairAlignments=122;LeftRepeat=L3:LINE:CR1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr14	CG	SV	25660799	25661394	122	+	.	ID=1909;Type=deletion;Left=chr14:25660799-25661394;Right=chr14:25662232-25662640
chr14	CG	SV	25662232	25662640	122	+	.	ID=1909;Type=deletion;Left=chr14:25660799-25661394;Right=chr14:25662232-25662640
chr14	CG	SV	27939597	27942369	65	.	.	ID=1908;Type=deletion;Left=chr14:27939597-27940113+;Right=chr14:27941914-27942369+;Distance=2317;DiscordantMatePairAlignments=65;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66474977 (chr14:27939597-27941914);Frequency=0.12
chr14	CG	SV	27939597	27940113	65	+	.	ID=1908;Type=deletion;Left=chr14:27939597-27940113;Right=chr14:27941914-27942369
chr14	CG	SV	27941914	27942369	65	+	.	ID=1908;Type=deletion;Left=chr14:27939597-27940113;Right=chr14:27941914-27942369
chr14	CG	SV	28797797	28799076	116	.	.	ID=1907;Type=deletion;Left=chr14:28797797-28798336+;Right=chr14:28798561-28799076+;Distance=764;DiscordantMatePairAlignments=116;LeftRepeat=L1MC3:LINE:L1;RightRepeat=L1MC3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr14	CG	SV	28797797	28798336	116	+	.	ID=1907;Type=deletion;Left=chr14:28797797-28798336;Right=chr14:28798561-28799076
chr14	CG	SV	28798561	28799076	116	+	.	ID=1907;Type=deletion;Left=chr14:28797797-28798336;Right=chr14:28798561-28799076
chr14	CG	SV	34772046	34773194	22	.	.	ID=1905;Type=deletion;Left=chr14:34772046-34772643+;Right=chr14:34772632-34773194+;Distance=586;DiscordantMatePairAlignments=22;LeftRepeat=;RightRepeat=;LeftGenes=NM_014672;RightGenes=NM_014672;XRef=rs72508073 (chr14:34772043-34772629);Frequency=0.00
chr14	CG	SV	34772046	34772643	22	+	.	ID=1905;Type=deletion;Left=chr14:34772046-34772643;Right=chr14:34772632-34773194
chr14	CG	SV	34772632	34773194	22	+	.	ID=1905;Type=deletion;Left=chr14:34772046-34772643;Right=chr14:34772632-34773194
chr14	CG	SV	38074269	38075195	40	.	.	ID=1903;Type=deletion;Left=chr14:38074269-38074629+;Right=chr14:38074778-38075195+;Distance=509;DiscordantMatePairAlignments=40;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72187421 (chr14:38074269-38074778);Frequency=0.41
chr14	CG	SV	38074269	38074629	40	+	.	ID=1903;Type=deletion;Left=chr14:38074269-38074629;Right=chr14:38074778-38075195
chr14	CG	SV	38074778	38075195	40	+	.	ID=1903;Type=deletion;Left=chr14:38074269-38074629;Right=chr14:38074778-38075195
chr14	CG	SV	39168145	39170440	123	.	.	ID=1902;Type=deletion;Left=chr14:39168145-39168625+;Right=chr14:39169967-39170440+;Distance=1822;DiscordantMatePairAlignments=123;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66498065 (chr14:39168160-39169982);Frequency=0.59
chr14	CG	SV	39168145	39168625	123	+	.	ID=1902;Type=deletion;Left=chr14:39168145-39168625;Right=chr14:39169967-39170440
chr14	CG	SV	39169967	39170440	123	+	.	ID=1902;Type=deletion;Left=chr14:39168145-39168625;Right=chr14:39169967-39170440
chr14	CG	SV	39679566	39687881	69	.	.	ID=1901;Type=deletion;Left=chr14:39679566-39680070+;Right=chr14:39687423-39687881+;Distance=7857;DiscordantMatePairAlignments=69;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr14	CG	SV	39679566	39680070	69	+	.	ID=1901;Type=deletion;Left=chr14:39679566-39680070;Right=chr14:39687423-39687881
chr14	CG	SV	39687423	39687881	69	+	.	ID=1901;Type=deletion;Left=chr14:39679566-39680070;Right=chr14:39687423-39687881
chr14	CG	SV	48451337	48455598	21	.	.	ID=206;Type=complex;Left=chr14:48451337-48451653-;Right=chr14:48455207-48455598+;Distance=3554;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=THE1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr14	CG	SV	48451337	48451653	21	-	.	ID=206;Type=complex;Left=chr14:48451337-48451653;Right=chr14:48455207-48455598
chr14	CG	SV	48455207	48455598	21	-	.	ID=206;Type=complex;Left=chr14:48451337-48451653;Right=chr14:48455207-48455598
chr14	CG	SV	48451670	48451999	40	.	.	ID=3565;Type=complex;Left=chr14:48451670-48452009+;Right=chr14:48451669-48451999-;Distance=329;DiscordantMatePairAlignments=40;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr14	CG	SV	48451670	48452009	40	+	.	ID=3565;Type=complex;Left=chr14:48451670-48452009;Right=chr14:48451669-48451999
chr14	CG	SV	48451669	48451999	40	+	.	ID=3565;Type=complex;Left=chr14:48451670-48452009;Right=chr14:48451669-48451999
chr14	CG	SV	49261481	49262106	67	.	.	ID=785;Type=tandem-duplication;Left=chr14:49261481-49261790-;Right=chr14:49261788-49262106-;Distance=316;DiscordantMatePairAlignments=67;LeftRepeat=L3:LINE:CR1;RightRepeat=;LeftGenes=NM_172193;RightGenes=NM_172193;XRef=;Frequency=1.00
chr14	CG	SV	49261481	49261790	67	-	.	ID=785;Type=tandem-duplication;Left=chr14:49261481-49261790;Right=chr14:49261788-49262106
chr14	CG	SV	49261788	49262106	67	-	.	ID=785;Type=tandem-duplication;Left=chr14:49261481-49261790;Right=chr14:49261788-49262106
chr14	CG	SV	51448094	51449198	86	.	.	ID=1898;Type=deletion;Left=chr14:51448094-51448679+;Right=chr14:51448653-51449198+;Distance=559;DiscordantMatePairAlignments=86;LeftRepeat=AluJo:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_053064;RightGenes=NM_053064;XRef=rs72381763 (chr14:51448094-51448653);Frequency=0.12
chr14	CG	SV	51448094	51448679	86	+	.	ID=1898;Type=deletion;Left=chr14:51448094-51448679;Right=chr14:51448653-51449198
chr14	CG	SV	51448653	51449198	86	+	.	ID=1898;Type=deletion;Left=chr14:51448094-51448679;Right=chr14:51448653-51449198
chr14	CG	SV	51826548	51827412	10	.	.	ID=1897;Type=deletion;Left=chr14:51826548-51827090+;Right=chr14:51826879-51827412+;Distance=331;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6145343 (chr14:51826548-51826879);Frequency=0.00
chr14	CG	SV	51826548	51827090	10	+	.	ID=1897;Type=deletion;Left=chr14:51826548-51827090;Right=chr14:51826879-51827412
chr14	CG	SV	51826879	51827412	10	+	.	ID=1897;Type=deletion;Left=chr14:51826548-51827090;Right=chr14:51826879-51827412
chr14	CG	SV	64358649	64359368	14	.	.	ID=205;Type=probable-inversion;Left=chr14:64358649-64358740-;Right=chr14:64358847-64359368+;Distance=107;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=(CA)n:Simple_repeat:Simple_repeat;Tandem CA;LeftGenes=NM_000347;NM_001024858;RightGenes=NM_000347;NM_001024858;XRef=;Frequency=1.00
chr14	CG	SV	64358649	64358740	14	-	.	ID=205;Type=probable-inversion;Left=chr14:64358649-64358740;Right=chr14:64358847-64359368
chr14	CG	SV	64358847	64359368	14	-	.	ID=205;Type=probable-inversion;Left=chr14:64358649-64358740;Right=chr14:64358847-64359368
chr14	CG	SV	64911873	64913414	11	.	.	ID=204;Type=distal-duplication;Left=chr14:64911873-64912292-;Right=chr14:64913169-64913414+;Distance=877;DiscordantMatePairAlignments=11;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr14	CG	SV	64911873	64912292	11	-	.	ID=204;Type=distal-duplication;Left=chr14:64911873-64912292;Right=chr14:64913169-64913414
chr14	CG	SV	64913169	64913414	11	-	.	ID=204;Type=distal-duplication;Left=chr14:64911873-64912292;Right=chr14:64913169-64913414
chr14	CG	SV	64912407	64912888	64	.	.	ID=3560;Type=distal-duplication;Left=chr14:64912407-64913013+;Right=chr14:64912572-64912888-;Distance=481;DiscordantMatePairAlignments=64;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr14	CG	SV	64912407	64913013	64	+	.	ID=3560;Type=distal-duplication;Left=chr14:64912407-64913013;Right=chr14:64912572-64912888
chr14	CG	SV	64912572	64912888	64	+	.	ID=3560;Type=distal-duplication;Left=chr14:64912407-64913013;Right=chr14:64912572-64912888
chr14	CG	SV	65327935	65328161	10	.	.	ID=784;Type=tandem-duplication;Left=chr14:65327935-65328048-;Right=chr14:65328043-65328161-;Distance=113;DiscordantMatePairAlignments=10;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr14	CG	SV	65327935	65328048	10	-	.	ID=784;Type=tandem-duplication;Left=chr14:65327935-65328048;Right=chr14:65328043-65328161
chr14	CG	SV	65328043	65328161	10	-	.	ID=784;Type=tandem-duplication;Left=chr14:65327935-65328048;Right=chr14:65328043-65328161
chr14	CG	SV	66903367	66932640	23	.	.	ID=783;Type=tandem-duplication;Left=chr14:66903367-66903721-;Right=chr14:66932445-66932640-;Distance=28919;DiscordantMatePairAlignments=23;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_004094;RightGenes=NM_016445;XRef=;Frequency=0.12
chr14	CG	SV	66903367	66903721	23	-	.	ID=783;Type=tandem-duplication;Left=chr14:66903367-66903721;Right=chr14:66932445-66932640
chr14	CG	SV	66932445	66932640	23	-	.	ID=783;Type=tandem-duplication;Left=chr14:66903367-66903721;Right=chr14:66932445-66932640
chr14	CG	SV	67672898	67674013	81	.	.	ID=1888;Type=deletion;Left=chr14:67672898-67673265+;Right=chr14:67673598-67674013+;Distance=700;DiscordantMatePairAlignments=81;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_002877;NM_133509;NM_133510;RightGenes=NM_002877;NM_133509;NM_133510;XRef=rs67596241 (chr14:67672784-67673484);Frequency=0.94
chr14	CG	SV	67672898	67673265	81	+	.	ID=1888;Type=deletion;Left=chr14:67672898-67673265;Right=chr14:67673598-67674013
chr14	CG	SV	67673598	67674013	81	+	.	ID=1888;Type=deletion;Left=chr14:67672898-67673265;Right=chr14:67673598-67674013
chr14	CG	SV	69086749	69092707	158	.	.	ID=1887;Type=deletion;Left=chr14:69086749-69087322+;Right=chr14:69092243-69092707+;Distance=5494;DiscordantMatePairAlignments=158;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr14	CG	SV	69086749	69087322	158	+	.	ID=1887;Type=deletion;Left=chr14:69086749-69087322;Right=chr14:69092243-69092707
chr14	CG	SV	69092243	69092707	158	+	.	ID=1887;Type=deletion;Left=chr14:69086749-69087322;Right=chr14:69092243-69092707
chr14	CG	SV	75883534	75884480	19	.	.	ID=1885;Type=deletion;Left=chr14:75883534-75884101+;Right=chr14:75883967-75884480+;Distance=433;DiscordantMatePairAlignments=19;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72100137 (chr14:75883527-75883962);Frequency=0.59
chr14	CG	SV	75883534	75884101	19	+	.	ID=1885;Type=deletion;Left=chr14:75883534-75884101;Right=chr14:75883967-75884480
chr14	CG	SV	75883967	75884480	19	+	.	ID=1885;Type=deletion;Left=chr14:75883534-75884101;Right=chr14:75883967-75884480
chr14	CG	SV	78624043	78625118	156	.	.	ID=1882;Type=deletion;Left=chr14:78624043-78624552+;Right=chr14:78624647-78625118+;Distance=604;DiscordantMatePairAlignments=156;LeftRepeat=;RightRepeat=;LeftGenes=NM_004796;RightGenes=NM_004796;XRef=;Frequency=0.00
chr14	CG	SV	78624043	78624552	156	+	.	ID=1882;Type=deletion;Left=chr14:78624043-78624552;Right=chr14:78624647-78625118
chr14	CG	SV	78624647	78625118	156	+	.	ID=1882;Type=deletion;Left=chr14:78624043-78624552;Right=chr14:78624647-78625118
chr14	CG	SV	79050947	79052320	58	.	.	ID=1881;Type=deletion;Left=chr14:79050947-79051331+;Right=chr14:79051752-79052320+;Distance=805;DiscordantMatePairAlignments=58;LeftRepeat=;RightRepeat=(TTC)n:Simple_repeat:Simple_repeat;LeftGenes=NM_001105250;NM_004796;NM_138970;RightGenes=NM_001105250;NM_004796;NM_138970;XRef=;Frequency=0.00
chr14	CG	SV	79050947	79051331	58	+	.	ID=1881;Type=deletion;Left=chr14:79050947-79051331;Right=chr14:79051752-79052320
chr14	CG	SV	79051752	79052320	58	+	.	ID=1881;Type=deletion;Left=chr14:79050947-79051331;Right=chr14:79051752-79052320
chr14	CG	SV	79550995	79551963	33	.	.	ID=1880;Type=deletion;Left=chr14:79550995-79551463+;Right=chr14:79551445-79551963+;Distance=450;DiscordantMatePairAlignments=33;LeftRepeat=MER20:DNA:MER1_type;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs72172017 (chr14:79550995-79551445);Frequency=0.00
chr14	CG	SV	79550995	79551463	33	+	.	ID=1880;Type=deletion;Left=chr14:79550995-79551463;Right=chr14:79551445-79551963
chr14	CG	SV	79551445	79551963	33	+	.	ID=1880;Type=deletion;Left=chr14:79550995-79551463;Right=chr14:79551445-79551963
chr14	CG	SV	81568863	81573521	54	.	.	ID=1877;Type=deletion;Left=chr14:81568863-81569336+;Right=chr14:81573083-81573521+;Distance=4220;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr14	CG	SV	81568863	81569336	54	+	.	ID=1877;Type=deletion;Left=chr14:81568863-81569336;Right=chr14:81573083-81573521
chr14	CG	SV	81573083	81573521	54	+	.	ID=1877;Type=deletion;Left=chr14:81568863-81569336;Right=chr14:81573083-81573521
chr14	CG	SV	82705599	82706634	65	.	.	ID=1875;Type=deletion;Left=chr14:82705599-82706150+;Right=chr14:82706246-82706634+;Distance=647;DiscordantMatePairAlignments=65;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71765712 (chr14:82705589-82706236);Frequency=0.94
chr14	CG	SV	82705599	82706150	65	+	.	ID=1875;Type=deletion;Left=chr14:82705599-82706150;Right=chr14:82706246-82706634
chr14	CG	SV	82706246	82706634	65	+	.	ID=1875;Type=deletion;Left=chr14:82705599-82706150;Right=chr14:82706246-82706634
chr14	CG	SV	84208899	84209797	30	.	.	ID=1874;Type=deletion;Left=chr14:84208899-84209384+;Right=chr14:84209379-84209797+;Distance=480;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66883043 (chr14:84208898-84209378);Frequency=0.65
chr14	CG	SV	84208899	84209384	30	+	.	ID=1874;Type=deletion;Left=chr14:84208899-84209384;Right=chr14:84209379-84209797
chr14	CG	SV	84209379	84209797	30	+	.	ID=1874;Type=deletion;Left=chr14:84208899-84209384;Right=chr14:84209379-84209797
chr14	CG	SV	100062712	100063032	11	.	.	ID=776;Type=tandem-duplication;Left=chr14:100062712-100062873-;Right=chr14:100062931-100063032-;Distance=159;DiscordantMatePairAlignments=11;LeftRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;RightRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;LeftGenes=NM_001161476;NM_024515;RightGenes=NM_001161476;NM_024515;XRef=;Frequency=1.00
chr14	CG	SV	100062712	100062873	11	-	.	ID=776;Type=tandem-duplication;Left=chr14:100062712-100062873;Right=chr14:100062931-100063032
chr14	CG	SV	100062931	100063032	11	-	.	ID=776;Type=tandem-duplication;Left=chr14:100062712-100062873;Right=chr14:100062931-100063032
chr14	CG	SV	103432412	103432868	55	.	.	ID=775;Type=tandem-duplication;Left=chr14:103432412-103432642-;Right=chr14:103432755-103432868-;Distance=226;DiscordantMatePairAlignments=55;LeftRepeat=Self chain;Tandem period 33;RightRepeat=Tandem period 33;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	103432412	103432642	55	-	.	ID=775;Type=tandem-duplication;Left=chr14:103432412-103432642;Right=chr14:103432755-103432868
chr14	CG	SV	103432755	103432868	55	-	.	ID=775;Type=tandem-duplication;Left=chr14:103432412-103432642;Right=chr14:103432755-103432868
chr14	CG	SV	104345015	104346340	52	.	.	ID=1870;Type=deletion;Left=chr14:104345015-104345380+;Right=chr14:104345851-104346340+;Distance=836;DiscordantMatePairAlignments=52;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71803557 (chr14:104344945-104345705);Frequency=0.94
chr14	CG	SV	104345015	104345380	52	+	.	ID=1870;Type=deletion;Left=chr14:104345015-104345380;Right=chr14:104345851-104346340
chr14	CG	SV	104345851	104346340	52	+	.	ID=1870;Type=deletion;Left=chr14:104345015-104345380;Right=chr14:104345851-104346340
chr14	CG	SV	104699662	104700106	66	.	.	ID=774;Type=tandem-duplication;Left=chr14:104699662-104699860-;Right=chr14:104699869-104700106-;Distance=246;DiscordantMatePairAlignments=66;LeftRepeat=Self chain;Tandem period 17;Tandem period 33;RightRepeat=Self chain;LeftGenes=NM_002226;NM_145159;RightGenes=NM_002226;NM_145159;XRef=;Frequency=0.65
chr14	CG	SV	104699662	104699860	66	-	.	ID=774;Type=tandem-duplication;Left=chr14:104699662-104699860;Right=chr14:104699869-104700106
chr14	CG	SV	104699869	104700106	66	-	.	ID=774;Type=tandem-duplication;Left=chr14:104699662-104699860;Right=chr14:104699869-104700106
chr14	CG	SV	106003685	106246569	14	.	.	ID=1863;Type=deletion;Left=chr14:106003685-106003806+;Right=chr14:106245975-106246569+;Distance=242290;DiscordantMatePairAlignments=14;LeftRepeat=MER89-int:LTR:ERV1;SegDup;Self chain;RightRepeat=LTR52-int:LTR:ERVL;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr14	CG	SV	106003685	106003806	14	+	.	ID=1863;Type=deletion;Left=chr14:106003685-106003806;Right=chr14:106245975-106246569
chr14	CG	SV	106245975	106246569	14	+	.	ID=1863;Type=deletion;Left=chr14:106003685-106003806;Right=chr14:106245975-106246569
chr14	CG	SV	106232592	106232836	203	.	.	ID=770;Type=tandem-duplication;Left=chr14:106232592-106232718-;Right=chr14:106232717-106232836-;Distance=118;DiscordantMatePairAlignments=203;LeftRepeat=Self chain;Tandem period 59;RightRepeat=Self chain;Tandem period 59;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	106232592	106232718	203	-	.	ID=770;Type=tandem-duplication;Left=chr14:106232592-106232718;Right=chr14:106232717-106232836
chr14	CG	SV	106232717	106232836	203	-	.	ID=770;Type=tandem-duplication;Left=chr14:106232592-106232718;Right=chr14:106232717-106232836
chr15	CG	SV	19838217	19845807	12	.	.	ID=1861;Type=deletion;Left=chr15:19838217-19838592+;Right=chr15:19845457-19845807+;Distance=7240;DiscordantMatePairAlignments=12;LeftRepeat=L1PA16:LINE:L1;SegDup;Self chain;RightRepeat=SegDup;Self chain;Tandem period 18;LeftGenes=NR_015416;RightGenes=NR_015416;XRef=;Frequency=0.59
chr15	CG	SV	19838217	19838592	12	+	.	ID=1861;Type=deletion;Left=chr15:19838217-19838592;Right=chr15:19845457-19845807
chr15	CG	SV	19845457	19845807	12	+	.	ID=1861;Type=deletion;Left=chr15:19838217-19838592;Right=chr15:19845457-19845807
chr15	CG	SV	22668221	22670189	12	.	.	ID=1860;Type=deletion;Left=chr15:22668221-22668634+;Right=chr15:22669964-22670189+;Distance=1743;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_022805;NM_022806;NM_022807;NM_022808;RightGenes=NM_022805;NM_022806;NM_022807;NM_022808;XRef=rs71114011 (chr15:22668086-22669829);Frequency=0.59
chr15	CG	SV	22668221	22668634	12	+	.	ID=1860;Type=deletion;Left=chr15:22668221-22668634;Right=chr15:22669964-22670189
chr15	CG	SV	22669964	22670189	12	+	.	ID=1860;Type=deletion;Left=chr15:22668221-22668634;Right=chr15:22669964-22670189
chr15	CG	SV	23482489	23483988	94	.	.	ID=1859;Type=deletion;Left=chr15:23482489-23482896+;Right=chr15:23483473-23483988+;Distance=984;DiscordantMatePairAlignments=94;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_024490;RightGenes=NM_024490;XRef=rs67967023 (chr15:23482489-23483473);Frequency=0.65
chr15	CG	SV	23482489	23482896	94	+	.	ID=1859;Type=deletion;Left=chr15:23482489-23482896;Right=chr15:23483473-23483988
chr15	CG	SV	23483473	23483988	94	+	.	ID=1859;Type=deletion;Left=chr15:23482489-23482896;Right=chr15:23483473-23483988
chr15	CG	SV	24513160	24513972	19	.	.	ID=1858;Type=deletion;Left=chr15:24513160-24513703+;Right=chr15:24513598-24513972+;Distance=438;DiscordantMatePairAlignments=19;LeftRepeat=(CAGCC)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 31;RightRepeat=Self chain;Tandem period 28;LeftGenes=NM_000814;NM_021912;RightGenes=NM_000814;NM_021912;XRef=rs71825912 (chr15:24512992-24513368);Frequency=0.35
chr15	CG	SV	24513160	24513703	19	+	.	ID=1858;Type=deletion;Left=chr15:24513160-24513703;Right=chr15:24513598-24513972
chr15	CG	SV	24513598	24513972	19	+	.	ID=1858;Type=deletion;Left=chr15:24513160-24513703;Right=chr15:24513598-24513972
chr15	CG	SV	32796325	32797181	13	.	.	ID=1856;Type=deletion;Left=chr15:32796325-32796747+;Right=chr15:32796660-32797181+;Distance=335;DiscordantMatePairAlignments=13;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71114022 (chr15:32796325-32796660);Frequency=1.00
chr15	CG	SV	32796325	32796747	13	+	.	ID=1856;Type=deletion;Left=chr15:32796325-32796747;Right=chr15:32796660-32797181
chr15	CG	SV	32796660	32797181	13	+	.	ID=1856;Type=deletion;Left=chr15:32796325-32796747;Right=chr15:32796660-32797181
chr15	CG	SV	33947426	33949999	104	.	.	ID=1855;Type=deletion;Left=chr15:33947426-33947866+;Right=chr15:33949511-33949999+;Distance=2085;DiscordantMatePairAlignments=104;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr15	CG	SV	33947426	33947866	104	+	.	ID=1855;Type=deletion;Left=chr15:33947426-33947866;Right=chr15:33949511-33949999
chr15	CG	SV	33949511	33949999	104	+	.	ID=1855;Type=deletion;Left=chr15:33947426-33947866;Right=chr15:33949511-33949999
chr15	CG	SV	37159686	37161189	17	.	.	ID=1853;Type=deletion;Left=chr15:37159686-37159992+;Right=chr15:37160927-37161189+;Distance=1241;DiscordantMatePairAlignments=17;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72034666 (chr15:37159646-37160752);Frequency=0.94
chr15	CG	SV	37159686	37159992	17	+	.	ID=1853;Type=deletion;Left=chr15:37159686-37159992;Right=chr15:37160927-37161189
chr15	CG	SV	37160927	37161189	17	+	.	ID=1853;Type=deletion;Left=chr15:37159686-37159992;Right=chr15:37160927-37161189
chr15	CG	SV	37531683	37532533	22	.	.	ID=1851;Type=deletion;Left=chr15:37531683-37532173+;Right=chr15:37532152-37532533+;Distance=469;DiscordantMatePairAlignments=22;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs67504900 (chr15:37531673-37532142);Frequency=0.94
chr15	CG	SV	37531683	37532173	22	+	.	ID=1851;Type=deletion;Left=chr15:37531683-37532173;Right=chr15:37532152-37532533
chr15	CG	SV	37532152	37532533	22	+	.	ID=1851;Type=deletion;Left=chr15:37531683-37532173;Right=chr15:37532152-37532533
chr15	CG	SV	43855272	43856006	10	.	.	ID=1847;Type=deletion;Left=chr15:43855272-43855778+;Right=chr15:43855622-43856006+;Distance=350;DiscordantMatePairAlignments=10;LeftRepeat=L1MEa:LINE:L1;Tandem T;RightRepeat=L1MEa:LINE:L1;LeftGenes=;RightGenes=;XRef=rs10705261 (chr15:43855256-43855606);Frequency=1.00
chr15	CG	SV	43855272	43855778	10	+	.	ID=1847;Type=deletion;Left=chr15:43855272-43855778;Right=chr15:43855622-43856006
chr15	CG	SV	43855622	43856006	10	+	.	ID=1847;Type=deletion;Left=chr15:43855272-43855778;Right=chr15:43855622-43856006
chr15	CG	SV	53005512	53012272	27	.	.	ID=1846;Type=deletion;Left=chr15:53005512-53005906+;Right=chr15:53011721-53012272+;Distance=6209;DiscordantMatePairAlignments=27;LeftRepeat=L1M1:LINE:L1;RightRepeat=L1ME3:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71114035 (chr15:53005522-53011731);Frequency=1.00
chr15	CG	SV	53005512	53005906	27	+	.	ID=1846;Type=deletion;Left=chr15:53005512-53005906;Right=chr15:53011721-53012272
chr15	CG	SV	53011721	53012272	27	+	.	ID=1846;Type=deletion;Left=chr15:53005512-53005906;Right=chr15:53011721-53012272
chr15	CG	SV	57500190	57500825	11	.	.	ID=1843;Type=complex;Left=chr15:57500190-57500759+;Right=chr15:57500521-57500825+;Distance=331;DiscordantMatePairAlignments=11;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67321160 (chr15:57500178-57500509);Frequency=1.00
chr15	CG	SV	57500190	57500759	11	+	.	ID=1843;Type=complex;Left=chr15:57500190-57500759;Right=chr15:57500521-57500825
chr15	CG	SV	57500521	57500825	11	+	.	ID=1843;Type=complex;Left=chr15:57500190-57500759;Right=chr15:57500521-57500825
chr15	CG	SV	57500190	57501019	12	.	.	ID=1844;Type=complex;Left=chr15:57500190-57500578+;Right=chr15:57500521-57501019+;Distance=331;DiscordantMatePairAlignments=12;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr15	CG	SV	57500190	57500578	12	+	.	ID=1844;Type=complex;Left=chr15:57500190-57500578;Right=chr15:57500521-57501019
chr15	CG	SV	57500521	57501019	12	+	.	ID=1844;Type=complex;Left=chr15:57500190-57500578;Right=chr15:57500521-57501019
chr15	CG	SV	65191558	65192938	22	.	.	ID=1839;Type=deletion;Left=chr15:65191558-65191672+;Right=chr15:65192661-65192938+;Distance=1103;DiscordantMatePairAlignments=22;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_005902;RightGenes=NM_005902;XRef=;Frequency=0.18
chr15	CG	SV	65191558	65191672	22	+	.	ID=1839;Type=deletion;Left=chr15:65191558-65191672;Right=chr15:65192661-65192938
chr15	CG	SV	65192661	65192938	22	+	.	ID=1839;Type=deletion;Left=chr15:65191558-65191672;Right=chr15:65192661-65192938
chr15	CG	SV	66213065	66216434	90	.	.	ID=1838;Type=deletion;Left=chr15:66213065-66213492+;Right=chr15:66215990-66216434+;Distance=2925;DiscordantMatePairAlignments=90;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_016166;RightGenes=NM_016166;XRef=rs67082670 (chr15:66213074-66215999);Frequency=1.00
chr15	CG	SV	66213065	66213492	90	+	.	ID=1838;Type=deletion;Left=chr15:66213065-66213492;Right=chr15:66215990-66216434
chr15	CG	SV	66215990	66216434	90	+	.	ID=1838;Type=deletion;Left=chr15:66213065-66213492;Right=chr15:66215990-66216434
chr15	CG	SV	68808907	68815069	35	.	.	ID=1837;Type=deletion;Left=chr15:68808907-68809377+;Right=chr15:68814576-68815069+;Distance=5669;DiscordantMatePairAlignments=35;LeftRepeat=Self chain;RightRepeat=L1PA16:LINE:L1;Self chain;LeftGenes=NM_018003;RightGenes=NM_018003;XRef=rs6145622 (chr15:68808893-68814562);Frequency=0.12
chr15	CG	SV	68808907	68809377	35	+	.	ID=1837;Type=deletion;Left=chr15:68808907-68809377;Right=chr15:68814576-68815069
chr15	CG	SV	68814576	68815069	35	+	.	ID=1837;Type=deletion;Left=chr15:68808907-68809377;Right=chr15:68814576-68815069
chr15	CG	SV	70358844	70362895	59	.	.	ID=1834;Type=deletion;Left=chr15:70358844-70359252+;Right=chr15:70362631-70362895+;Distance=3787;DiscordantMatePairAlignments=59;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	70358844	70359252	59	+	.	ID=1834;Type=deletion;Left=chr15:70358844-70359252;Right=chr15:70362631-70362895
chr15	CG	SV	70362631	70362895	59	+	.	ID=1834;Type=deletion;Left=chr15:70358844-70359252;Right=chr15:70362631-70362895
chr15	CG	SV	75697927	75698688	16	.	.	ID=1833;Type=deletion;Left=chr15:75697927-75698409+;Right=chr15:75698301-75698688+;Distance=374;DiscordantMatePairAlignments=16;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_032808;RightGenes=NM_032808;XRef=rs35529068 (chr15:75697916-75698290);Frequency=1.00
chr15	CG	SV	75697927	75698409	16	+	.	ID=1833;Type=deletion;Left=chr15:75697927-75698409;Right=chr15:75698301-75698688
chr15	CG	SV	75698301	75698688	16	+	.	ID=1833;Type=deletion;Left=chr15:75697927-75698409;Right=chr15:75698301-75698688
chr15	CG	SV	75853112	75855643	71	.	.	ID=1831;Type=deletion;Left=chr15:75853112-75853556+;Right=chr15:75855217-75855643+;Distance=2105;DiscordantMatePairAlignments=71;LeftRepeat=Self chain;Tandem period 16;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	75853112	75853556	71	+	.	ID=1831;Type=deletion;Left=chr15:75853112-75853556;Right=chr15:75855217-75855643
chr15	CG	SV	75855217	75855643	71	+	.	ID=1831;Type=deletion;Left=chr15:75853112-75853556;Right=chr15:75855217-75855643
chr15	CG	SV	85471753	85490941	73	.	.	ID=762;Type=tandem-duplication;Left=chr15:85471753-85472178-;Right=chr15:85490469-85490941-;Distance=18763;DiscordantMatePairAlignments=73;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	85471753	85472178	73	-	.	ID=762;Type=tandem-duplication;Left=chr15:85471753-85472178;Right=chr15:85490469-85490941
chr15	CG	SV	85490469	85490941	73	-	.	ID=762;Type=tandem-duplication;Left=chr15:85471753-85472178;Right=chr15:85490469-85490941
chr15	CG	SV	85500984	85501841	16	.	.	ID=1824;Type=deletion;Left=chr15:85500984-85501288+;Right=chr15:85501431-85501841+;Distance=447;DiscordantMatePairAlignments=16;LeftRepeat=(TTCC)n:Simple_repeat:Simple_repeat;Tandem TTCC;Tandem period 28;Tandem period 43;Tandem period 71;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem TTCC;Tandem period 28;Tandem period 43;Tandem period 71;LeftGenes=;RightGenes=;XRef=rs67982659 (chr15:85501027-85501436);Frequency=0.71
chr15	CG	SV	85500984	85501288	16	+	.	ID=1824;Type=deletion;Left=chr15:85500984-85501288;Right=chr15:85501431-85501841
chr15	CG	SV	85501431	85501841	16	+	.	ID=1824;Type=deletion;Left=chr15:85500984-85501288;Right=chr15:85501431-85501841
chr15	CG	SV	93028315	93029222	43	.	.	ID=1819;Type=deletion;Left=chr15:93028315-93028792+;Right=chr15:93028958-93029222+;Distance=643;DiscordantMatePairAlignments=43;LeftRepeat=MER58A:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	93028315	93028792	43	+	.	ID=1819;Type=deletion;Left=chr15:93028315-93028792;Right=chr15:93028958-93029222
chr15	CG	SV	93028958	93029222	43	+	.	ID=1819;Type=deletion;Left=chr15:93028315-93028792;Right=chr15:93028958-93029222
chr15	CG	SV	93492677	93493551	12	.	.	ID=1818;Type=complex;Left=chr15:93492677-93492941+;Right=chr15:93493334-93493551+;Distance=657;DiscordantMatePairAlignments=12;LeftRepeat=LTR12_:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr15	CG	SV	93492677	93492941	12	+	.	ID=1818;Type=complex;Left=chr15:93492677-93492941;Right=chr15:93493334-93493551
chr15	CG	SV	93493334	93493551	12	+	.	ID=1818;Type=complex;Left=chr15:93492677-93492941;Right=chr15:93493334-93493551
chr15	CG	SV	93492677	93493759	57	.	.	ID=3473;Type=complex;Left=chr15:93492677-93493094+;Right=chr15:93493538-93493759-;Distance=1082;DiscordantMatePairAlignments=57;LeftRepeat=LTR12_:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr15	CG	SV	93492677	93493094	57	+	.	ID=3473;Type=complex;Left=chr15:93492677-93493094;Right=chr15:93493538-93493759
chr15	CG	SV	93493538	93493759	57	+	.	ID=3473;Type=complex;Left=chr15:93492677-93493094;Right=chr15:93493538-93493759
chr15	CG	SV	93493022	93493762	36	.	.	ID=195;Type=complex;Left=chr15:93493022-93493334-;Right=chr15:93493545-93493762+;Distance=211;DiscordantMatePairAlignments=36;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr15	CG	SV	93493022	93493334	36	-	.	ID=195;Type=complex;Left=chr15:93493022-93493334;Right=chr15:93493545-93493762
chr15	CG	SV	93493545	93493762	36	-	.	ID=195;Type=complex;Left=chr15:93493022-93493334;Right=chr15:93493545-93493762
chr15	CG	SV	96717594	96718574	27	.	.	ID=1816;Type=deletion;Left=chr15:96717594-96717866+;Right=chr15:96718160-96718574+;Distance=566;DiscordantMatePairAlignments=27;LeftRepeat=L1MC:LINE:L1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67424211 (chr15:96717594-96718160);Frequency=0.71
chr15	CG	SV	96717594	96717866	27	+	.	ID=1816;Type=deletion;Left=chr15:96717594-96717866;Right=chr15:96718160-96718574
chr15	CG	SV	96718160	96718574	27	+	.	ID=1816;Type=deletion;Left=chr15:96717594-96717866;Right=chr15:96718160-96718574
chr15	CG	SV	97528914	97529786	25	.	.	ID=761;Type=tandem-duplication;Left=chr15:97528914-97529331-;Right=chr15:97529593-97529786-;Distance=455;DiscordantMatePairAlignments=25;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001040655;NM_001040656;NM_001040657;NM_001040658;NM_001040659;NM_001040660;NM_022905;RightGenes=NM_001040655;NM_001040656;NM_001040657;NM_001040658;NM_001040659;NM_001040660;NM_022905;XRef=;Frequency=0.00
chr15	CG	SV	97528914	97529331	25	-	.	ID=761;Type=tandem-duplication;Left=chr15:97528914-97529331;Right=chr15:97529593-97529786
chr15	CG	SV	97529593	97529786	25	-	.	ID=761;Type=tandem-duplication;Left=chr15:97528914-97529331;Right=chr15:97529593-97529786
chr15	CG	SV	98869416	98870109	10	.	.	ID=1814;Type=deletion;Left=chr15:98869416-98869816+;Right=chr15:98869855-98870109+;Distance=439;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 63;RightRepeat=Self chain;LeftGenes=NM_178842;RightGenes=NM_178842;XRef=rs72451132 (chr15:98869262-98869701);Frequency=1.00
chr15	CG	SV	98869416	98869816	10	+	.	ID=1814;Type=deletion;Left=chr15:98869416-98869816;Right=chr15:98869855-98870109
chr15	CG	SV	98869855	98870109	10	+	.	ID=1814;Type=deletion;Left=chr15:98869416-98869816;Right=chr15:98869855-98870109
chr15	CG	SV	99479635	99479825	18	.	.	ID=760;Type=tandem-duplication;Left=chr15:99479635-99479729-;Right=chr15:99479726-99479825-;Distance=96;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=Tandem period 50;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr15	CG	SV	99479635	99479729	18	-	.	ID=760;Type=tandem-duplication;Left=chr15:99479635-99479729;Right=chr15:99479726-99479825
chr15	CG	SV	99479726	99479825	18	-	.	ID=760;Type=tandem-duplication;Left=chr15:99479635-99479729;Right=chr15:99479726-99479825
chr16	CG	SV	1362953	1364549	21	.	.	ID=1725;Type=deletion;Left=chr16:1362953-1363421+;Right=chr16:1364216-1364549+;Distance=1263;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;Tandem period 55;RightRepeat=Self chain;Tandem period 55;LeftGenes=NM_023076;RightGenes=NM_023076;XRef=;Frequency=1.00
chr16	CG	SV	1362953	1363421	21	+	.	ID=1725;Type=deletion;Left=chr16:1362953-1363421;Right=chr16:1364216-1364549
chr16	CG	SV	1364216	1364549	21	+	.	ID=1725;Type=deletion;Left=chr16:1362953-1363421;Right=chr16:1364216-1364549
chr16	CG	SV	8595669	8597530	56	.	.	ID=1723;Type=deletion;Left=chr16:8595669-8595984+;Right=chr16:8597062-8597530+;Distance=1393;DiscordantMatePairAlignments=56;LeftRepeat=;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr16	CG	SV	8595669	8595984	56	+	.	ID=1723;Type=deletion;Left=chr16:8595669-8595984;Right=chr16:8597062-8597530
chr16	CG	SV	8597062	8597530	56	+	.	ID=1723;Type=deletion;Left=chr16:8595669-8595984;Right=chr16:8597062-8597530
chr16	CG	SV	8663018	8664746	12	.	.	ID=1722;Type=deletion;Left=chr16:8663018-8663525+;Right=chr16:8664578-8664746+;Distance=1560;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr16	CG	SV	8663018	8663525	12	+	.	ID=1722;Type=deletion;Left=chr16:8663018-8663525;Right=chr16:8664578-8664746
chr16	CG	SV	8664578	8664746	12	+	.	ID=1722;Type=deletion;Left=chr16:8663018-8663525;Right=chr16:8664578-8664746
chr16	CG	SV	9157693	9158751	10	.	.	ID=1721;Type=deletion;Left=chr16:9157693-9158170+;Right=chr16:9158290-9158751+;Distance=597;DiscordantMatePairAlignments=10;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	9157693	9158170	10	+	.	ID=1721;Type=deletion;Left=chr16:9157693-9158170;Right=chr16:9158290-9158751
chr16	CG	SV	9158290	9158751	10	+	.	ID=1721;Type=deletion;Left=chr16:9157693-9158170;Right=chr16:9158290-9158751
chr16	CG	SV	14488262	33858184	179	.	.	ID=99;Type=complex;Left=chr16:14488262-14488376-;Right=chr16:33857677-33858184+;Distance=19369301;DiscordantMatePairAlignments=179;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=NM_001134477;NM_002582;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	14488262	14488376	179	-	.	ID=99;Type=complex;Left=chr16:14488262-14488376;Right=chr16:33857677-33858184
chr16	CG	SV	33857677	33858184	179	-	.	ID=99;Type=complex;Left=chr16:14488262-14488376;Right=chr16:33857677-33858184
chr16	CG	SV	14488479	33857187	20	.	.	ID=3470;Type=complex;Left=chr16:14488479-14488567+;Right=chr16:33856797-33857187-;Distance=19368708;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=NM_001134477;NM_002582;RightGenes=;XRef=;Frequency=0.53
chr16	CG	SV	14488479	14488567	20	+	.	ID=3470;Type=complex;Left=chr16:14488479-14488567;Right=chr16:33856797-33857187
chr16	CG	SV	33856797	33857187	20	+	.	ID=3470;Type=complex;Left=chr16:14488479-14488567;Right=chr16:33856797-33857187
chr16	CG	SV	19137943	19138748	15	.	.	ID=1717;Type=deletion;Left=chr16:19137943-19138433+;Right=chr16:19138295-19138748+;Distance=352;DiscordantMatePairAlignments=15;LeftRepeat=AluYb9:SINE:Alu;Self chain;RightRepeat=L1MC4:LINE:L1;Self chain;LeftGenes=NM_016524;RightGenes=NM_016524;XRef=rs10529565 (chr16:19137943-19138295);Frequency=0.94
chr16	CG	SV	19137943	19138433	15	+	.	ID=1717;Type=deletion;Left=chr16:19137943-19138433;Right=chr16:19138295-19138748
chr16	CG	SV	19138295	19138748	15	+	.	ID=1717;Type=deletion;Left=chr16:19137943-19138433;Right=chr16:19138295-19138748
chr16	CG	SV	19853055	19875606	25	.	.	ID=1716;Type=deletion;Left=chr16:19853055-19853393+;Right=chr16:19875084-19875606+;Distance=22029;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;RightRepeat=L1PA7:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr16	CG	SV	19853055	19853393	25	+	.	ID=1716;Type=deletion;Left=chr16:19853055-19853393;Right=chr16:19875084-19875606
chr16	CG	SV	19875084	19875606	25	+	.	ID=1716;Type=deletion;Left=chr16:19853055-19853393;Right=chr16:19875084-19875606
chr16	CG	SV	21501943	22618252	104	.	.	ID=3471;Type=probable-inversion;Left=chr16:21501943-21502480+;Right=chr16:22617790-22618252-;Distance=1116309;DiscordantMatePairAlignments=104;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	21501943	21502480	104	+	.	ID=3471;Type=probable-inversion;Left=chr16:21501943-21502480;Right=chr16:22617790-22618252
chr16	CG	SV	22617790	22618252	104	+	.	ID=3471;Type=probable-inversion;Left=chr16:21501943-21502480;Right=chr16:22617790-22618252
chr16	CG	SV	22955276	22957448	72	.	.	ID=1713;Type=deletion;Left=chr16:22955276-22955817+;Right=chr16:22957032-22957448+;Distance=1756;DiscordantMatePairAlignments=72;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67692612 (chr16:22955282-22957032);Frequency=0.88
chr16	CG	SV	22955276	22955817	72	+	.	ID=1713;Type=deletion;Left=chr16:22955276-22955817;Right=chr16:22957032-22957448
chr16	CG	SV	22957032	22957448	72	+	.	ID=1713;Type=deletion;Left=chr16:22955276-22955817;Right=chr16:22957032-22957448
chr16	CG	SV	25247612	25251152	40	.	.	ID=1710;Type=deletion;Left=chr16:25247612-25248106+;Right=chr16:25250630-25251152+;Distance=3018;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72108142 (chr16:25247612-25250630);Frequency=0.88
chr16	CG	SV	25247612	25248106	40	+	.	ID=1710;Type=deletion;Left=chr16:25247612-25248106;Right=chr16:25250630-25251152
chr16	CG	SV	25250630	25251152	40	+	.	ID=1710;Type=deletion;Left=chr16:25247612-25248106;Right=chr16:25250630-25251152
chr16	CG	SV	25546880	25547896	17	.	.	ID=1709;Type=deletion;Left=chr16:25546880-25547278+;Right=chr16:25547654-25547896+;Distance=774;DiscordantMatePairAlignments=17;LeftRepeat=LTR26:LTR:ERV1;Self chain;RightRepeat=L1PA16:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr16	CG	SV	25546880	25547278	17	+	.	ID=1709;Type=deletion;Left=chr16:25546880-25547278;Right=chr16:25547654-25547896
chr16	CG	SV	25547654	25547896	17	+	.	ID=1709;Type=deletion;Left=chr16:25546880-25547278;Right=chr16:25547654-25547896
chr16	CG	SV	26292486	26293776	62	.	.	ID=681;Type=tandem-duplication;Left=chr16:26292486-26292948-;Right=chr16:26293318-26293776-;Distance=828;DiscordantMatePairAlignments=62;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;Tandem GATG;RightRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;Tandem GATG;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	26292486	26292948	62	-	.	ID=681;Type=tandem-duplication;Left=chr16:26292486-26292948;Right=chr16:26293318-26293776
chr16	CG	SV	26293318	26293776	62	-	.	ID=681;Type=tandem-duplication;Left=chr16:26292486-26292948;Right=chr16:26293318-26293776
chr16	CG	SV	29093120	86731580	23	.	.	ID=672;Type=complex;Left=chr16:29093120-29093240-;Right=chr16:86731462-86731580-;Distance=57638340;DiscordantMatePairAlignments=23;LeftRepeat=SegDup;Self chain;Tandem period 44;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	29093120	29093240	23	-	.	ID=672;Type=complex;Left=chr16:29093120-29093240;Right=chr16:86731462-86731580
chr16	CG	SV	86731462	86731580	23	-	.	ID=672;Type=complex;Left=chr16:29093120-29093240;Right=chr16:86731462-86731580
chr16	CG	SV	33281488	33287247	15	.	.	ID=1706;Type=deletion;Left=chr16:33281488-33281736+;Right=chr16:33286906-33287247+;Distance=5418;DiscordantMatePairAlignments=15;LeftRepeat=SegDup;Self chain;TAR1:Satellite:telo;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr16	CG	SV	33281488	33281736	15	+	.	ID=1706;Type=deletion;Left=chr16:33281488-33281736;Right=chr16:33286906-33287247
chr16	CG	SV	33286906	33287247	15	+	.	ID=1706;Type=deletion;Left=chr16:33281488-33281736;Right=chr16:33286906-33287247
chr16	CG	SV	33829643	33830867	11	.	.	ID=1705;Type=deletion;Left=chr16:33829643-33829932+;Right=chr16:33830566-33830867+;Distance=923;DiscordantMatePairAlignments=11;LeftRepeat=L1MEc:LINE:L1;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	33829643	33829932	11	+	.	ID=1705;Type=deletion;Left=chr16:33829643-33829932;Right=chr16:33830566-33830867
chr16	CG	SV	33830566	33830867	11	+	.	ID=1705;Type=deletion;Left=chr16:33829643-33829932;Right=chr16:33830566-33830867
chr16	CG	SV	33834282	33840535	14	.	.	ID=1704;Type=deletion;Left=chr16:33834282-33834832+;Right=chr16:33840255-33840535+;Distance=5973;DiscordantMatePairAlignments=14;LeftRepeat=L1MA9:LINE:L1;SegDup;Self chain;RightRepeat=L1MA9:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr16	CG	SV	33834282	33834832	14	+	.	ID=1704;Type=deletion;Left=chr16:33834282-33834832;Right=chr16:33840255-33840535
chr16	CG	SV	33840255	33840535	14	+	.	ID=1704;Type=deletion;Left=chr16:33834282-33834832;Right=chr16:33840255-33840535
chr16	CG	SV	33857202	33858092	32	.	.	ID=1698;Type=complex;Left=chr16:33857202-33857753+;Right=chr16:33857592-33858092+;Distance=390;DiscordantMatePairAlignments=32;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	33857202	33857753	32	+	.	ID=1698;Type=complex;Left=chr16:33857202-33857753;Right=chr16:33857592-33858092
chr16	CG	SV	33857592	33858092	32	+	.	ID=1698;Type=complex;Left=chr16:33857202-33857753;Right=chr16:33857592-33858092
chr16	CG	SV	33859791	33863532	112	.	.	ID=679;Type=tandem-duplication;Left=chr16:33859791-33860096-;Right=chr16:33862768-33863532-;Distance=3436;DiscordantMatePairAlignments=112;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	33859791	33860096	112	-	.	ID=679;Type=tandem-duplication;Left=chr16:33859791-33860096;Right=chr16:33862768-33863532
chr16	CG	SV	33862768	33863532	112	-	.	ID=679;Type=tandem-duplication;Left=chr16:33859791-33860096;Right=chr16:33862768-33863532
chr16	CG	SV	46838061	46838876	52	.	.	ID=674;Type=tandem-duplication;Left=chr16:46838061-46838423-;Right=chr16:46838490-46838876-;Distance=453;DiscordantMatePairAlignments=52;LeftRepeat=;RightRepeat=;LeftGenes=NM_031490;RightGenes=NM_031490;XRef=;Frequency=1.00
chr16	CG	SV	46838061	46838423	52	-	.	ID=674;Type=tandem-duplication;Left=chr16:46838061-46838423;Right=chr16:46838490-46838876
chr16	CG	SV	46838490	46838876	52	-	.	ID=674;Type=tandem-duplication;Left=chr16:46838061-46838423;Right=chr16:46838490-46838876
chr16	CG	SV	47845805	47847047	78	.	.	ID=1695;Type=deletion;Left=chr16:47845805-47846290+;Right=chr16:47846598-47847047+;Distance=793;DiscordantMatePairAlignments=78;LeftRepeat=MLT1K:LTR:MaLR;RightRepeat=L1MCa:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67020437 (chr16:47845805-47846598);Frequency=0.00
chr16	CG	SV	47845805	47846290	78	+	.	ID=1695;Type=deletion;Left=chr16:47845805-47846290;Right=chr16:47846598-47847047
chr16	CG	SV	47846598	47847047	78	+	.	ID=1695;Type=deletion;Left=chr16:47845805-47846290;Right=chr16:47846598-47847047
chr16	CG	SV	57204721	57208050	10	.	.	ID=1692;Type=deletion;Left=chr16:57204721-57205147+;Right=chr16:57207795-57208050+;Distance=3074;DiscordantMatePairAlignments=10;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_016284;NM_206999;RightGenes=NM_016284;NM_206999;XRef=rs71810778 (chr16:57204691-57207765);Frequency=0.47
chr16	CG	SV	57204721	57205147	10	+	.	ID=1692;Type=deletion;Left=chr16:57204721-57205147;Right=chr16:57207795-57208050
chr16	CG	SV	57207795	57208050	10	+	.	ID=1692;Type=deletion;Left=chr16:57204721-57205147;Right=chr16:57207795-57208050
chr16	CG	SV	63146754	63149080	21	.	.	ID=1688;Type=deletion;Left=chr16:63146754-63147225+;Right=chr16:63148690-63149080+;Distance=1936;DiscordantMatePairAlignments=21;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	63146754	63147225	21	+	.	ID=1688;Type=deletion;Left=chr16:63146754-63147225;Right=chr16:63148690-63149080
chr16	CG	SV	63148690	63149080	21	+	.	ID=1688;Type=deletion;Left=chr16:63146754-63147225;Right=chr16:63148690-63149080
chr16	CG	SV	66491033	66496754	31	.	.	ID=1685;Type=deletion;Left=chr16:66491033-66491502+;Right=chr16:66496524-66496754+;Distance=5491;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_006742;RightGenes=NM_006742;XRef=;Frequency=0.00
chr16	CG	SV	66491033	66491502	31	+	.	ID=1685;Type=deletion;Left=chr16:66491033-66491502;Right=chr16:66496524-66496754
chr16	CG	SV	66496524	66496754	31	+	.	ID=1685;Type=deletion;Left=chr16:66491033-66491502;Right=chr16:66496524-66496754
chr16	CG	SV	68319022	68320731	14	.	.	ID=97;Type=distal-duplication;Left=chr16:68319022-68319320-;Right=chr16:68320549-68320731+;Distance=1229;DiscordantMatePairAlignments=14;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr16	CG	SV	68319022	68319320	14	-	.	ID=97;Type=distal-duplication;Left=chr16:68319022-68319320;Right=chr16:68320549-68320731
chr16	CG	SV	68320549	68320731	14	-	.	ID=97;Type=distal-duplication;Left=chr16:68319022-68319320;Right=chr16:68320549-68320731
chr16	CG	SV	68319632	68320388	69	.	.	ID=3468;Type=distal-duplication;Left=chr16:68319632-68319919+;Right=chr16:68319986-68320388-;Distance=756;DiscordantMatePairAlignments=69;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr16	CG	SV	68319632	68319919	69	+	.	ID=3468;Type=distal-duplication;Left=chr16:68319632-68319919;Right=chr16:68319986-68320388
chr16	CG	SV	68319986	68320388	69	+	.	ID=3468;Type=distal-duplication;Left=chr16:68319632-68319919;Right=chr16:68319986-68320388
chr16	CG	SV	69535300	69537931	110	.	.	ID=1680;Type=deletion;Left=chr16:69535300-69535781+;Right=chr16:69537395-69537931+;Distance=2095;DiscordantMatePairAlignments=110;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_032821;RightGenes=NM_032821;XRef=rs67363752 (chr16:69535300-69537395);Frequency=1.00
chr16	CG	SV	69535300	69535781	110	+	.	ID=1680;Type=deletion;Left=chr16:69535300-69535781;Right=chr16:69537395-69537931
chr16	CG	SV	69537395	69537931	110	+	.	ID=1680;Type=deletion;Left=chr16:69535300-69535781;Right=chr16:69537395-69537931
chr16	CG	SV	69721878	69722722	15	.	.	ID=1679;Type=deletion;Left=chr16:69721878-69722279+;Right=chr16:69722205-69722722+;Distance=327;DiscordantMatePairAlignments=15;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_017558;NM_032821;RightGenes=NM_017558;NM_032821;XRef=;Frequency=1.00
chr16	CG	SV	69721878	69722279	15	+	.	ID=1679;Type=deletion;Left=chr16:69721878-69722279;Right=chr16:69722205-69722722
chr16	CG	SV	69722205	69722722	15	+	.	ID=1679;Type=deletion;Left=chr16:69721878-69722279;Right=chr16:69722205-69722722
chr16	CG	SV	73987394	73988320	14	.	.	ID=1677;Type=deletion;Left=chr16:73987394-73987730+;Right=chr16:73988236-73988320+;Distance=842;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_006324;RightGenes=NM_006324;XRef=;Frequency=0.82
chr16	CG	SV	73987394	73987730	14	+	.	ID=1677;Type=deletion;Left=chr16:73987394-73987730;Right=chr16:73988236-73988320
chr16	CG	SV	73988236	73988320	14	+	.	ID=1677;Type=deletion;Left=chr16:73987394-73987730;Right=chr16:73988236-73988320
chr16	CG	SV	75096634	75102099	51	.	.	ID=1676;Type=deletion;Left=chr16:75096634-75097150+;Right=chr16:75101526-75102099+;Distance=4892;DiscordantMatePairAlignments=51;LeftRepeat=L1ME1:LINE:L1;Self chain;RightRepeat=L1MB8:LINE:L1;Self chain;LeftGenes=NM_033401;NM_138994;RightGenes=NM_033401;NM_138994;XRef=rs67420665 (chr16:75096635-75101526);Frequency=1.00
chr16	CG	SV	75096634	75097150	51	+	.	ID=1676;Type=deletion;Left=chr16:75096634-75097150;Right=chr16:75101526-75102099
chr16	CG	SV	75101526	75102099	51	+	.	ID=1676;Type=deletion;Left=chr16:75096634-75097150;Right=chr16:75101526-75102099
chr16	CG	SV	76929139	76942843	77	.	.	ID=1675;Type=deletion;Left=chr16:76929139-76929696+;Right=chr16:76942399-76942843+;Distance=13260;DiscordantMatePairAlignments=77;LeftRepeat=;RightRepeat=L1MB8:LINE:L1;LeftGenes=NM_016373;RightGenes=NM_016373;XRef=;Frequency=0.35
chr16	CG	SV	76929139	76929696	77	+	.	ID=1675;Type=deletion;Left=chr16:76929139-76929696;Right=chr16:76942399-76942843
chr16	CG	SV	76942399	76942843	77	+	.	ID=1675;Type=deletion;Left=chr16:76929139-76929696;Right=chr16:76942399-76942843
chr16	CG	SV	79731410	79732148	30	.	.	ID=1673;Type=deletion;Left=chr16:79731410-79732034+;Right=chr16:79731918-79732148+;Distance=508;DiscordantMatePairAlignments=30;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_052892;RightGenes=NM_052892;XRef=rs71136601 (chr16:79731342-79731850);Frequency=0.94
chr16	CG	SV	79731410	79732034	30	+	.	ID=1673;Type=deletion;Left=chr16:79731410-79732034;Right=chr16:79731918-79732148
chr16	CG	SV	79731918	79732148	30	+	.	ID=1673;Type=deletion;Left=chr16:79731410-79732034;Right=chr16:79731918-79732148
chr16	CG	SV	82228358	82234774	35	.	.	ID=1671;Type=deletion;Left=chr16:82228358-82228815+;Right=chr16:82234431-82234774+;Distance=6073;DiscordantMatePairAlignments=35;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001257;RightGenes=NM_001257;XRef=rs67146629 (chr16:82228340-82234413);Frequency=0.29
chr16	CG	SV	82228358	82228815	35	+	.	ID=1671;Type=deletion;Left=chr16:82228358-82228815;Right=chr16:82234431-82234774
chr16	CG	SV	82234431	82234774	35	+	.	ID=1671;Type=deletion;Left=chr16:82228358-82228815;Right=chr16:82234431-82234774
chr16	CG	SV	83707045	83708076	22	.	.	ID=1669;Type=deletion;Left=chr16:83707045-83707454+;Right=chr16:83707633-83708076+;Distance=588;DiscordantMatePairAlignments=22;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66482541 (chr16:83707045-83707633);Frequency=0.82
chr16	CG	SV	83707045	83707454	22	+	.	ID=1669;Type=deletion;Left=chr16:83707045-83707454;Right=chr16:83707633-83708076
chr16	CG	SV	83707633	83708076	22	+	.	ID=1669;Type=deletion;Left=chr16:83707045-83707454;Right=chr16:83707633-83708076
chr16	CG	SV	83745835	83747528	11	.	.	ID=94;Type=distal-duplication;Left=chr16:83745835-83746248-;Right=chr16:83747306-83747528+;Distance=1058;DiscordantMatePairAlignments=11;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	83745835	83746248	11	-	.	ID=94;Type=distal-duplication;Left=chr16:83745835-83746248;Right=chr16:83747306-83747528
chr16	CG	SV	83747306	83747528	11	-	.	ID=94;Type=distal-duplication;Left=chr16:83745835-83746248;Right=chr16:83747306-83747528
chr16	CG	SV	83746437	83747116	14	.	.	ID=3466;Type=distal-duplication;Left=chr16:83746437-83746946+;Right=chr16:83746940-83747116-;Distance=679;DiscordantMatePairAlignments=14;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	83746437	83746946	14	+	.	ID=3466;Type=distal-duplication;Left=chr16:83746437-83746946;Right=chr16:83746940-83747116
chr16	CG	SV	83746940	83747116	14	+	.	ID=3466;Type=distal-duplication;Left=chr16:83746437-83746946;Right=chr16:83746940-83747116
chr16	CG	SV	86385865	86389429	11	.	.	ID=1667;Type=deletion;Left=chr16:86385865-86386250+;Right=chr16:86388967-86389429+;Distance=3102;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=MER20B:DNA:MER1_type;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr16	CG	SV	86385865	86386250	11	+	.	ID=1667;Type=deletion;Left=chr16:86385865-86386250;Right=chr16:86388967-86389429
chr16	CG	SV	86388967	86389429	11	+	.	ID=1667;Type=deletion;Left=chr16:86385865-86386250;Right=chr16:86388967-86389429
chr16	CG	SV	86731366	86731536	34	.	.	ID=671;Type=complex;Left=chr16:86731366-86731448-;Right=chr16:86731458-86731536-;Distance=88;DiscordantMatePairAlignments=34;LeftRepeat=L1MEd:LINE:L1;SegDup;Self chain;Tandem period 44;RightRepeat=SegDup;Self chain;Tandem period 44;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	86731366	86731448	34	-	.	ID=671;Type=complex;Left=chr16:86731366-86731448;Right=chr16:86731458-86731536
chr16	CG	SV	86731458	86731536	34	-	.	ID=671;Type=complex;Left=chr16:86731366-86731448;Right=chr16:86731458-86731536
chr17	CG	SV	20599	22019	10	.	.	ID=1665;Type=deletion;Left=chr17:20599-20936+;Right=chr17:21803-22019+;Distance=1204;DiscordantMatePairAlignments=10;LeftRepeat=(CCGGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 32;Tandem period 98;RightRepeat=SUBTEL_sa:Satellite:Satellite;Self chain;Tandem period 32;Tandem period 98;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr17	CG	SV	20599	20936	10	+	.	ID=1665;Type=deletion;Left=chr17:20599-20936;Right=chr17:21803-22019
chr17	CG	SV	21803	22019	10	+	.	ID=1665;Type=deletion;Left=chr17:20599-20936;Right=chr17:21803-22019
chr17	CG	SV	748376	749461	22	.	.	ID=1664;Type=deletion;Left=chr17:748376-748669+;Right=chr17:748978-749461+;Distance=602;DiscordantMatePairAlignments=22;LeftRepeat=L2:LINE:L2;Self chain;Tandem period 133;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_022463;RightGenes=NM_022463;XRef=rs71864604 (chr17:748382-748978);Frequency=0.82
chr17	CG	SV	748376	748669	22	+	.	ID=1664;Type=deletion;Left=chr17:748376-748669;Right=chr17:748978-749461
chr17	CG	SV	748978	749461	22	+	.	ID=1664;Type=deletion;Left=chr17:748376-748669;Right=chr17:748978-749461
chr17	CG	SV	1902475	1903432	49	.	.	ID=1661;Type=deletion;Left=chr17:1902475-1902905+;Right=chr17:1903105-1903432+;Distance=630;DiscordantMatePairAlignments=49;LeftRepeat=Self chain;Tandem period 70;RightRepeat=Self chain;Tandem period 70;LeftGenes=;RightGenes=;XRef=rs71354834 (chr17:1902428-1903060);Frequency=0.94
chr17	CG	SV	1902475	1902905	49	+	.	ID=1661;Type=deletion;Left=chr17:1902475-1902905;Right=chr17:1903105-1903432
chr17	CG	SV	1903105	1903432	49	+	.	ID=1661;Type=deletion;Left=chr17:1902475-1902905;Right=chr17:1903105-1903432
chr17	CG	SV	6812281	6818323	34	.	.	ID=1658;Type=deletion;Left=chr17:6812281-6812894+;Right=chr17:6817901-6818323+;Distance=5620;DiscordantMatePairAlignments=34;LeftRepeat=L1M4:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67267651 (chr17:6812278-6817898);Frequency=0.00
chr17	CG	SV	6812281	6812894	34	+	.	ID=1658;Type=deletion;Left=chr17:6812281-6812894;Right=chr17:6817901-6818323
chr17	CG	SV	6817901	6818323	34	+	.	ID=1658;Type=deletion;Left=chr17:6812281-6812894;Right=chr17:6817901-6818323
chr17	CG	SV	6929642	6931019	24	.	.	ID=1657;Type=deletion;Left=chr17:6929642-6930192+;Right=chr17:6930877-6931019+;Distance=1235;DiscordantMatePairAlignments=24;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr17	CG	SV	6929642	6930192	24	+	.	ID=1657;Type=deletion;Left=chr17:6929642-6930192;Right=chr17:6930877-6931019
chr17	CG	SV	6930877	6931019	24	+	.	ID=1657;Type=deletion;Left=chr17:6929642-6930192;Right=chr17:6930877-6931019
chr17	CG	SV	10827583	10837092	38	.	.	ID=1656;Type=deletion;Left=chr17:10827583-10827726+;Right=chr17:10836460-10837092+;Distance=8877;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr17	CG	SV	10827583	10827726	38	+	.	ID=1656;Type=deletion;Left=chr17:10827583-10827726;Right=chr17:10836460-10837092
chr17	CG	SV	10836460	10837092	38	+	.	ID=1656;Type=deletion;Left=chr17:10827583-10827726;Right=chr17:10836460-10837092
chr17	CG	SV	11352392	11353569	44	.	.	ID=1655;Type=deletion;Left=chr17:11352392-11352863+;Right=chr17:11353062-11353569+;Distance=670;DiscordantMatePairAlignments=44;LeftRepeat=MLT1A0:LTR:MaLR;RightRepeat=;LeftGenes=NM_207386;RightGenes=NM_207386;XRef=;Frequency=0.47
chr17	CG	SV	11352392	11352863	44	+	.	ID=1655;Type=deletion;Left=chr17:11352392-11352863;Right=chr17:11353062-11353569
chr17	CG	SV	11353062	11353569	44	+	.	ID=1655;Type=deletion;Left=chr17:11352392-11352863;Right=chr17:11353062-11353569
chr17	CG	SV	12293871	12300399	37	.	.	ID=1653;Type=deletion;Left=chr17:12293871-12294245+;Right=chr17:12299992-12300399+;Distance=6121;DiscordantMatePairAlignments=37;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;RightRepeat=L1M3de:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr17	CG	SV	12293871	12294245	37	+	.	ID=1653;Type=deletion;Left=chr17:12293871-12294245;Right=chr17:12299992-12300399
chr17	CG	SV	12299992	12300399	37	+	.	ID=1653;Type=deletion;Left=chr17:12293871-12294245;Right=chr17:12299992-12300399
chr17	CG	SV	13472511	13473841	26	.	.	ID=1651;Type=deletion;Left=chr17:13472511-13472968+;Right=chr17:13473521-13473841+;Distance=1010;DiscordantMatePairAlignments=26;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr17	CG	SV	13472511	13472968	26	+	.	ID=1651;Type=deletion;Left=chr17:13472511-13472968;Right=chr17:13473521-13473841
chr17	CG	SV	13473521	13473841	26	+	.	ID=1651;Type=deletion;Left=chr17:13472511-13472968;Right=chr17:13473521-13473841
chr17	CG	SV	14130633	14132659	18	.	.	ID=1650;Type=deletion;Left=chr17:14130633-14131153+;Right=chr17:14132280-14132659+;Distance=1647;DiscordantMatePairAlignments=18;LeftRepeat=MER49:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71143412 (chr17:14130636-14132281);Frequency=1.00
chr17	CG	SV	14130633	14131153	18	+	.	ID=1650;Type=deletion;Left=chr17:14130633-14131153;Right=chr17:14132280-14132659
chr17	CG	SV	14132280	14132659	18	+	.	ID=1650;Type=deletion;Left=chr17:14130633-14131153;Right=chr17:14132280-14132659
chr17	CG	SV	15730283	15734978	50	.	.	ID=1649;Type=deletion;Left=chr17:15730283-15730685+;Right=chr17:15734518-15734978+;Distance=4235;DiscordantMatePairAlignments=50;LeftRepeat=Self chain;RightRepeat=(TTTA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem TTTA;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr17	CG	SV	15730283	15730685	50	+	.	ID=1649;Type=deletion;Left=chr17:15730283-15730685;Right=chr17:15734518-15734978
chr17	CG	SV	15734518	15734978	50	+	.	ID=1649;Type=deletion;Left=chr17:15730283-15730685;Right=chr17:15734518-15734978
chr17	CG	SV	17171100	17172555	165	.	.	ID=1648;Type=deletion;Left=chr17:17171100-17171655+;Right=chr17:17171976-17172555+;Distance=876;DiscordantMatePairAlignments=165;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_020201;RightGenes=NM_020201;XRef=rs66473553 (chr17:17171082-17171958);Frequency=0.82
chr17	CG	SV	17171100	17171655	165	+	.	ID=1648;Type=deletion;Left=chr17:17171100-17171655;Right=chr17:17171976-17172555
chr17	CG	SV	17171976	17172555	165	+	.	ID=1648;Type=deletion;Left=chr17:17171100-17171655;Right=chr17:17171976-17172555
chr17	CG	SV	18731874	18733309	40	.	.	ID=1647;Type=deletion;Left=chr17:18731874-18732403+;Right=chr17:18732899-18733309+;Distance=1025;DiscordantMatePairAlignments=40;LeftRepeat=L1MEd:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_002767;RightGenes=NM_002767;XRef=rs67305483 (chr17:18731863-18732888);Frequency=0.94
chr17	CG	SV	18731874	18732403	40	+	.	ID=1647;Type=deletion;Left=chr17:18731874-18732403;Right=chr17:18732899-18733309
chr17	CG	SV	18732899	18733309	40	+	.	ID=1647;Type=deletion;Left=chr17:18731874-18732403;Right=chr17:18732899-18733309
chr17	CG	SV	20619337	20621267	17	.	.	ID=1644;Type=deletion;Left=chr17:20619337-20619668+;Right=chr17:20620896-20621267+;Distance=1559;DiscordantMatePairAlignments=17;LeftRepeat=FLAM_C:SINE:Alu;Self chain;RightRepeat=AluJ/FLAM:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr17	CG	SV	20619337	20619668	17	+	.	ID=1644;Type=deletion;Left=chr17:20619337-20619668;Right=chr17:20620896-20621267
chr17	CG	SV	20620896	20621267	17	+	.	ID=1644;Type=deletion;Left=chr17:20619337-20619668;Right=chr17:20620896-20621267
chr17	CG	SV	21261870	21263993	162	.	.	ID=1643;Type=deletion;Left=chr17:21261870-21262537+;Right=chr17:21263414-21263993+;Distance=1544;DiscordantMatePairAlignments=162;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_021012;RightGenes=NM_021012;XRef=rs66470213 (chr17:21261871-21263414);Frequency=1.00
chr17	CG	SV	21261870	21262537	162	+	.	ID=1643;Type=deletion;Left=chr17:21261870-21262537;Right=chr17:21263414-21263993
chr17	CG	SV	21263414	21263993	162	+	.	ID=1643;Type=deletion;Left=chr17:21261870-21262537;Right=chr17:21263414-21263993
chr17	CG	SV	22560671	22565039	150	.	.	ID=1641;Type=deletion;Left=chr17:22560671-22561126+;Right=chr17:22564513-22565039+;Distance=3842;DiscordantMatePairAlignments=150;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs68078500 (chr17:22560666-22564508);Frequency=0.59
chr17	CG	SV	22560671	22561126	150	+	.	ID=1641;Type=deletion;Left=chr17:22560671-22561126;Right=chr17:22564513-22565039
chr17	CG	SV	22564513	22565039	150	+	.	ID=1641;Type=deletion;Left=chr17:22560671-22561126;Right=chr17:22564513-22565039
chr17	CG	SV	23806539	23808018	58	.	.	ID=1640;Type=deletion;Left=chr17:23806539-23806813+;Right=chr17:23807637-23808018+;Distance=1098;DiscordantMatePairAlignments=58;LeftRepeat=Self chain;RightRepeat=MLT2B2:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr17	CG	SV	23806539	23806813	58	+	.	ID=1640;Type=deletion;Left=chr17:23806539-23806813;Right=chr17:23807637-23808018
chr17	CG	SV	23807637	23808018	58	+	.	ID=1640;Type=deletion;Left=chr17:23806539-23806813;Right=chr17:23807637-23808018
chr17	CG	SV	27130737	27132080	79	.	.	ID=1639;Type=deletion;Left=chr17:27130737-27131286+;Right=chr17:27131656-27132080+;Distance=919;DiscordantMatePairAlignments=79;LeftRepeat=MLT1D:LTR:MaLR;Self chain;RightRepeat=MIRb:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=rs71771426 (chr17:27130737-27131656);Frequency=0.29
chr17	CG	SV	27130737	27131286	79	+	.	ID=1639;Type=deletion;Left=chr17:27130737-27131286;Right=chr17:27131656-27132080
chr17	CG	SV	27131656	27132080	79	+	.	ID=1639;Type=deletion;Left=chr17:27130737-27131286;Right=chr17:27131656-27132080
chr17	CG	SV	34701676	34702581	28	.	.	ID=1637;Type=deletion;Left=chr17:34701676-34702002+;Right=chr17:34702283-34702581+;Distance=607;DiscordantMatePairAlignments=28;LeftRepeat=L1MEc:LINE:L1;Self chain;RightRepeat=FAM:SINE:Alu;Self chain;LeftGenes=NM_032875;RightGenes=NM_032875;XRef=;Frequency=0.00
chr17	CG	SV	34701676	34702002	28	+	.	ID=1637;Type=deletion;Left=chr17:34701676-34702002;Right=chr17:34702283-34702581
chr17	CG	SV	34702283	34702581	28	+	.	ID=1637;Type=deletion;Left=chr17:34701676-34702002;Right=chr17:34702283-34702581
chr17	CG	SV	38736879	38819412	24	.	.	ID=92;Type=probable-inversion;Left=chr17:38736879-38737115-;Right=chr17:38819096-38819412+;Distance=81981;DiscordantMatePairAlignments=24;LeftRepeat=SegDup;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=NR_027412;NR_027413;XRef=;Frequency=1.00
chr17	CG	SV	38736879	38737115	24	-	.	ID=92;Type=probable-inversion;Left=chr17:38736879-38737115;Right=chr17:38819096-38819412
chr17	CG	SV	38819096	38819412	24	-	.	ID=92;Type=probable-inversion;Left=chr17:38736879-38737115;Right=chr17:38819096-38819412
chr17	CG	SV	38738271	38755773	13	.	.	ID=1635;Type=deletion;Left=chr17:38738271-38738814+;Right=chr17:38755397-38755773+;Distance=17126;DiscordantMatePairAlignments=13;LeftRepeat=AluSx:SINE:Alu;SegDup;Self chain;Tandem A;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr17	CG	SV	38738271	38738814	13	+	.	ID=1635;Type=deletion;Left=chr17:38738271-38738814;Right=chr17:38755397-38755773
chr17	CG	SV	38755397	38755773	13	+	.	ID=1635;Type=deletion;Left=chr17:38738271-38738814;Right=chr17:38755397-38755773
chr17	CG	SV	38791611	38798013	18	.	.	ID=663;Type=tandem-duplication;Left=chr17:38791611-38791976-;Right=chr17:38797656-38798013-;Distance=6037;DiscordantMatePairAlignments=18;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr17	CG	SV	38791611	38791976	18	-	.	ID=663;Type=tandem-duplication;Left=chr17:38791611-38791976;Right=chr17:38797656-38798013
chr17	CG	SV	38797656	38798013	18	-	.	ID=663;Type=tandem-duplication;Left=chr17:38791611-38791976;Right=chr17:38797656-38798013
chr17	CG	SV	38793658	38796137	15	.	.	ID=1633;Type=deletion;Left=chr17:38793658-38794092+;Right=chr17:38795877-38796137+;Distance=2219;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66799059 (chr17:38793491-38795710);Frequency=0.41
chr17	CG	SV	38793658	38794092	15	+	.	ID=1633;Type=deletion;Left=chr17:38793658-38794092;Right=chr17:38795877-38796137
chr17	CG	SV	38795877	38796137	15	+	.	ID=1633;Type=deletion;Left=chr17:38793658-38794092;Right=chr17:38795877-38796137
chr17	CG	SV	41643280	42531128	11	.	.	ID=662;Type=tandem-duplication;Left=chr17:41643280-41643642-;Right=chr17:42530744-42531128-;Distance=887486;DiscordantMatePairAlignments=11;LeftRepeat=AluSc:SINE:Alu;Self chain;Tandem A;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr17	CG	SV	41643280	41643642	11	-	.	ID=662;Type=tandem-duplication;Left=chr17:41643280-41643642;Right=chr17:42530744-42531128
chr17	CG	SV	42530744	42531128	11	-	.	ID=662;Type=tandem-duplication;Left=chr17:41643280-41643642;Right=chr17:42530744-42531128
chr17	CG	SV	42569727	42571259	425	.	.	ID=1631;Type=complex;Left=chr17:42569727-42570195+;Right=chr17:42571105-42571259+;Distance=1378;DiscordantMatePairAlignments=425;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091;NM_001256;RightGenes=NM_001114091;NM_001256;XRef=;Frequency=1.00
chr17	CG	SV	42569727	42570195	425	+	.	ID=1631;Type=complex;Left=chr17:42569727-42570195;Right=chr17:42571105-42571259
chr17	CG	SV	42571105	42571259	425	+	.	ID=1631;Type=complex;Left=chr17:42569727-42570195;Right=chr17:42571105-42571259
chr17	CG	SV	42569727	42574803	368	.	.	ID=1630;Type=complex;Left=chr17:42569727-42570173+;Right=chr17:42574216-42574803+;Distance=4489;DiscordantMatePairAlignments=368;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091;NM_001256;RightGenes=NM_001114091;NM_001256;XRef=;Frequency=1.00
chr17	CG	SV	42569727	42570173	368	+	.	ID=1630;Type=complex;Left=chr17:42569727-42570173;Right=chr17:42574216-42574803
chr17	CG	SV	42574216	42574803	368	+	.	ID=1630;Type=complex;Left=chr17:42569727-42570173;Right=chr17:42574216-42574803
chr17	CG	SV	42571256	42574389	11	.	.	ID=1629;Type=complex;Left=chr17:42571256-42571409+;Right=chr17:42574225-42574389+;Distance=2969;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091;NM_001256;RightGenes=NM_001114091;NM_001256;XRef=;Frequency=1.00
chr17	CG	SV	42571256	42571409	11	+	.	ID=1629;Type=complex;Left=chr17:42571256-42571409;Right=chr17:42574225-42574389
chr17	CG	SV	42574225	42574389	11	+	.	ID=1629;Type=complex;Left=chr17:42571256-42571409;Right=chr17:42574225-42574389
chr17	CG	SV	42574391	42576327	40	.	.	ID=1625;Type=complex;Left=chr17:42574391-42574568+;Right=chr17:42576250-42576327+;Distance=1859;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091;NM_001256;RightGenes=NM_001114091;NM_001256;XRef=;Frequency=1.00
chr17	CG	SV	42574391	42574568	40	+	.	ID=1625;Type=complex;Left=chr17:42574391-42574568;Right=chr17:42576250-42576327
chr17	CG	SV	42576250	42576327	40	+	.	ID=1625;Type=complex;Left=chr17:42574391-42574568;Right=chr17:42576250-42576327
chr17	CG	SV	42574803	42587144	19	.	.	ID=1624;Type=complex;Left=chr17:42574803-42575350+;Right=chr17:42587036-42587144+;Distance=12233;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091;NM_001256;RightGenes=NM_001114091;NM_001256;XRef=;Frequency=0.35
chr17	CG	SV	42574803	42575350	19	+	.	ID=1624;Type=complex;Left=chr17:42574803-42575350;Right=chr17:42587036-42587144
chr17	CG	SV	42587036	42587144	19	+	.	ID=1624;Type=complex;Left=chr17:42574803-42575350;Right=chr17:42587036-42587144
chr17	CG	SV	42574803	42589424	70	.	.	ID=1622;Type=complex;Left=chr17:42574803-42574986+;Right=chr17:42589277-42589424+;Distance=14474;DiscordantMatePairAlignments=70;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091;NM_001256;RightGenes=NM_001114091;NM_001256;XRef=;Frequency=1.00
chr17	CG	SV	42574803	42574986	70	+	.	ID=1622;Type=complex;Left=chr17:42574803-42574986;Right=chr17:42589277-42589424
chr17	CG	SV	42589277	42589424	70	+	.	ID=1622;Type=complex;Left=chr17:42574803-42574986;Right=chr17:42589277-42589424
chr17	CG	SV	42576345	42589474	224	.	.	ID=1621;Type=complex;Left=chr17:42576345-42576448+;Right=chr17:42589277-42589474+;Distance=12932;DiscordantMatePairAlignments=224;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091;NM_001256;RightGenes=NM_001114091;NM_001256;XRef=;Frequency=1.00
chr17	CG	SV	42576345	42576448	224	+	.	ID=1621;Type=complex;Left=chr17:42576345-42576448;Right=chr17:42589277-42589474
chr17	CG	SV	42589277	42589474	224	+	.	ID=1621;Type=complex;Left=chr17:42576345-42576448;Right=chr17:42589277-42589474
chr17	CG	SV	42587148	42589746	25	.	.	ID=1618;Type=complex;Left=chr17:42587148-42587263+;Right=chr17:42589277-42589746+;Distance=2129;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091;NM_001256;RightGenes=NM_001114091;NM_001256;XRef=;Frequency=0.65
chr17	CG	SV	42587148	42587263	25	+	.	ID=1618;Type=complex;Left=chr17:42587148-42587263;Right=chr17:42589277-42589746
chr17	CG	SV	42589277	42589746	25	+	.	ID=1618;Type=complex;Left=chr17:42587148-42587263;Right=chr17:42589277-42589746
chr17	CG	SV	42589489	42590672	176	.	.	ID=1615;Type=complex;Left=chr17:42589489-42589695+;Right=chr17:42590569-42590672+;Distance=1080;DiscordantMatePairAlignments=176;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091;NM_001256;RightGenes=NM_001114091;NM_001256;XRef=;Frequency=1.00
chr17	CG	SV	42589489	42589695	176	+	.	ID=1615;Type=complex;Left=chr17:42589489-42589695;Right=chr17:42590569-42590672
chr17	CG	SV	42590569	42590672	176	+	.	ID=1615;Type=complex;Left=chr17:42589489-42589695;Right=chr17:42590569-42590672
chr17	CG	SV	42589750	42602407	43	.	.	ID=1614;Type=complex;Left=chr17:42589750-42590212+;Right=chr17:42602281-42602407+;Distance=12531;DiscordantMatePairAlignments=43;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091;NM_001256;RightGenes=NM_001114091;NM_001256;XRef=;Frequency=1.00
chr17	CG	SV	42589750	42590212	43	+	.	ID=1614;Type=complex;Left=chr17:42589750-42590212;Right=chr17:42602281-42602407
chr17	CG	SV	42602281	42602407	43	+	.	ID=1614;Type=complex;Left=chr17:42589750-42590212;Right=chr17:42602281-42602407
chr17	CG	SV	42589750	42604370	40	.	.	ID=1613;Type=complex;Left=chr17:42589750-42590190+;Right=chr17:42604280-42604370+;Distance=14530;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091;NM_001256;RightGenes=NM_001114091;NM_001256;XRef=;Frequency=1.00
chr17	CG	SV	42589750	42590190	40	+	.	ID=1613;Type=complex;Left=chr17:42589750-42590190;Right=chr17:42604280-42604370
chr17	CG	SV	42604280	42604370	40	+	.	ID=1613;Type=complex;Left=chr17:42589750-42590190;Right=chr17:42604280-42604370
chr17	CG	SV	42590669	42621655	63	.	.	ID=1609;Type=complex;Left=chr17:42590669-42590770+;Right=chr17:42621509-42621655+;Distance=30840;DiscordantMatePairAlignments=63;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091;NM_001256;RightGenes=NM_001114091;NM_001256;XRef=;Frequency=1.00
chr17	CG	SV	42590669	42590770	63	+	.	ID=1609;Type=complex;Left=chr17:42590669-42590770;Right=chr17:42621509-42621655
chr17	CG	SV	42621509	42621655	63	+	.	ID=1609;Type=complex;Left=chr17:42590669-42590770;Right=chr17:42621509-42621655
chr17	CG	SV	42590669	42614007	159	.	.	ID=1610;Type=complex;Left=chr17:42590669-42590770+;Right=chr17:42613926-42614007+;Distance=23257;DiscordantMatePairAlignments=159;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091;NM_001256;RightGenes=NM_001114091;NM_001256;XRef=;Frequency=1.00
chr17	CG	SV	42590669	42590770	159	+	.	ID=1610;Type=complex;Left=chr17:42590669-42590770;Right=chr17:42613926-42614007
chr17	CG	SV	42613926	42614007	159	+	.	ID=1610;Type=complex;Left=chr17:42590669-42590770;Right=chr17:42613926-42614007
chr17	CG	SV	44392289	44393020	11	.	.	ID=1605;Type=deletion;Left=chr17:44392289-44392646+;Right=chr17:44392889-44393020+;Distance=600;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 40;RightRepeat=Self chain;LeftGenes=NM_004123;RightGenes=NM_004123;XRef=rs71886448 (chr17:44392094-44392694);Frequency=1.00
chr17	CG	SV	44392289	44392646	11	+	.	ID=1605;Type=deletion;Left=chr17:44392289-44392646;Right=chr17:44392889-44393020
chr17	CG	SV	44392889	44393020	11	+	.	ID=1605;Type=deletion;Left=chr17:44392289-44392646;Right=chr17:44392889-44393020
chr17	CG	SV	44706794	44708513	38	.	.	ID=1603;Type=deletion;Left=chr17:44706794-44707241+;Right=chr17:44708097-44708513+;Distance=1303;DiscordantMatePairAlignments=38;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr17	CG	SV	44706794	44707241	38	+	.	ID=1603;Type=deletion;Left=chr17:44706794-44707241;Right=chr17:44708097-44708513
chr17	CG	SV	44708097	44708513	38	+	.	ID=1603;Type=deletion;Left=chr17:44706794-44707241;Right=chr17:44708097-44708513
chr17	CG	SV	46978998	46982621	153	.	.	ID=1600;Type=deletion;Left=chr17:46978998-46979505+;Right=chr17:46982054-46982621+;Distance=3056;DiscordantMatePairAlignments=153;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.25
chr17	CG	SV	46978998	46979505	153	+	.	ID=1600;Type=deletion;Left=chr17:46978998-46979505;Right=chr17:46982054-46982621
chr17	CG	SV	46982054	46982621	153	+	.	ID=1600;Type=deletion;Left=chr17:46978998-46979505;Right=chr17:46982054-46982621
chr17	CG	SV	50138867	50140018	20	.	.	ID=1599;Type=deletion;Left=chr17:50138867-50139234+;Right=chr17:50139541-50140018+;Distance=674;DiscordantMatePairAlignments=20;LeftRepeat=L1PREC2:LINE:L1;RightRepeat=L1PREC2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr17	CG	SV	50138867	50139234	20	+	.	ID=1599;Type=deletion;Left=chr17:50138867-50139234;Right=chr17:50139541-50140018
chr17	CG	SV	50139541	50140018	20	+	.	ID=1599;Type=deletion;Left=chr17:50138867-50139234;Right=chr17:50139541-50140018
chr17	CG	SV	53042810	53045105	10	.	.	ID=1598;Type=deletion;Left=chr17:53042810-53043341+;Right=chr17:53044915-53045105+;Distance=2105;DiscordantMatePairAlignments=10;LeftRepeat=AluSg:SINE:Alu;RightRepeat=;LeftGenes=NM_138962;NM_170721;RightGenes=NM_138962;NM_170721;XRef=;Frequency=0.88
chr17	CG	SV	53042810	53043341	10	+	.	ID=1598;Type=deletion;Left=chr17:53042810-53043341;Right=chr17:53044915-53045105
chr17	CG	SV	53044915	53045105	10	+	.	ID=1598;Type=deletion;Left=chr17:53042810-53043341;Right=chr17:53044915-53045105
chr17	CG	SV	61695514	61696985	82	.	.	ID=1596;Type=deletion;Left=chr17:61695514-61696043+;Right=chr17:61696586-61696985+;Distance=1072;DiscordantMatePairAlignments=82;LeftRepeat=;RightRepeat=L1MB3:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67644564 (chr17:61695504-61696576);Frequency=0.35
chr17	CG	SV	61695514	61696043	82	+	.	ID=1596;Type=deletion;Left=chr17:61695514-61696043;Right=chr17:61696586-61696985
chr17	CG	SV	61696586	61696985	82	+	.	ID=1596;Type=deletion;Left=chr17:61695514-61696043;Right=chr17:61696586-61696985
chr17	CG	SV	65468923	65469678	48	.	.	ID=659;Type=tandem-duplication;Left=chr17:65468923-65469279-;Right=chr17:65469294-65469678-;Distance=399;DiscordantMatePairAlignments=48;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr17	CG	SV	65468923	65469279	48	-	.	ID=659;Type=tandem-duplication;Left=chr17:65468923-65469279;Right=chr17:65469294-65469678
chr17	CG	SV	65469294	65469678	48	-	.	ID=659;Type=tandem-duplication;Left=chr17:65468923-65469279;Right=chr17:65469294-65469678
chr17	CG	SV	68881671	68882879	20	.	.	ID=1587;Type=deletion;Left=chr17:68881671-68882128+;Right=chr17:68882502-68882879+;Distance=831;DiscordantMatePairAlignments=20;LeftRepeat=L1M:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=NM_001144952;RightGenes=NM_001144952;XRef=rs72327633 (chr17:68881529-68882360);Frequency=0.06
chr17	CG	SV	68881671	68882128	20	+	.	ID=1587;Type=deletion;Left=chr17:68881671-68882128;Right=chr17:68882502-68882879
chr17	CG	SV	68882502	68882879	20	+	.	ID=1587;Type=deletion;Left=chr17:68881671-68882128;Right=chr17:68882502-68882879
chr17	CG	SV	68896557	68897527	11	.	.	ID=658;Type=tandem-duplication;Left=chr17:68896557-68896962-;Right=chr17:68897309-68897527-;Distance=565;DiscordantMatePairAlignments=11;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001144952;RightGenes=NM_001144952;XRef=;Frequency=0.00
chr17	CG	SV	68896557	68896962	11	-	.	ID=658;Type=tandem-duplication;Left=chr17:68896557-68896962;Right=chr17:68897309-68897527
chr17	CG	SV	68897309	68897527	11	-	.	ID=658;Type=tandem-duplication;Left=chr17:68896557-68896962;Right=chr17:68897309-68897527
chr17	CG	SV	69234177	69235307	25	.	.	ID=1586;Type=deletion;Left=chr17:69234177-69234672+;Right=chr17:69234637-69235307+;Distance=460;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;Tandem period 46;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72123924 (chr17:69233997-69234457);Frequency=0.47
chr17	CG	SV	69234177	69234672	25	+	.	ID=1586;Type=deletion;Left=chr17:69234177-69234672;Right=chr17:69234637-69235307
chr17	CG	SV	69234637	69235307	25	+	.	ID=1586;Type=deletion;Left=chr17:69234177-69234672;Right=chr17:69234637-69235307
chr17	CG	SV	71387004	71391206	24	.	.	ID=1583;Type=deletion;Left=chr17:71387004-71387496+;Right=chr17:71391064-71391206+;Distance=4060;DiscordantMatePairAlignments=24;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr17	CG	SV	71387004	71387496	24	+	.	ID=1583;Type=deletion;Left=chr17:71387004-71387496;Right=chr17:71391064-71391206
chr17	CG	SV	71391064	71391206	24	+	.	ID=1583;Type=deletion;Left=chr17:71387004-71387496;Right=chr17:71391064-71391206
chr17	CG	SV	71791550	71792638	18	.	.	ID=1582;Type=deletion;Left=chr17:71791550-71792146+;Right=chr17:71792495-71792638+;Distance=945;DiscordantMatePairAlignments=18;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_032134;RightGenes=NM_032134;XRef=;Frequency=0.00
chr17	CG	SV	71791550	71792146	18	+	.	ID=1582;Type=deletion;Left=chr17:71791550-71792146;Right=chr17:71792495-71792638
chr17	CG	SV	71792495	71792638	18	+	.	ID=1582;Type=deletion;Left=chr17:71791550-71792146;Right=chr17:71792495-71792638
chr17	CG	SV	72499125	72499910	10	.	.	ID=1581;Type=deletion;Left=chr17:72499125-72499704+;Right=chr17:72499444-72499910+;Distance=319;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=MSTA:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs10522931 (chr17:72499115-72499434);Frequency=0.94
chr17	CG	SV	72499125	72499704	10	+	.	ID=1581;Type=deletion;Left=chr17:72499125-72499704;Right=chr17:72499444-72499910
chr17	CG	SV	72499444	72499910	10	+	.	ID=1581;Type=deletion;Left=chr17:72499125-72499704;Right=chr17:72499444-72499910
chr17	CG	SV	76189949	76191256	18	.	.	ID=1579;Type=deletion;Left=chr17:76189949-76190310+;Right=chr17:76190876-76191256+;Distance=927;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_001163034;NM_020761;RightGenes=NM_001163034;NM_020761;XRef=;Frequency=0.65
chr17	CG	SV	76189949	76190310	18	+	.	ID=1579;Type=deletion;Left=chr17:76189949-76190310;Right=chr17:76190876-76191256
chr17	CG	SV	76190876	76191256	18	+	.	ID=1579;Type=deletion;Left=chr17:76189949-76190310;Right=chr17:76190876-76191256
chr17	CG	SV	77084921	77086353	14	.	.	ID=1578;Type=deletion;Left=chr17:77084921-77085171+;Right=chr17:77085896-77086353+;Distance=975;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72252307 (chr17:77085099-77086086);Frequency=0.88
chr17	CG	SV	77084921	77085171	14	+	.	ID=1578;Type=deletion;Left=chr17:77084921-77085171;Right=chr17:77085896-77086353
chr17	CG	SV	77085896	77086353	14	+	.	ID=1578;Type=deletion;Left=chr17:77084921-77085171;Right=chr17:77085896-77086353
chr17	CG	SV	77683307	77684736	16	.	.	ID=1577;Type=deletion;Left=chr17:77683307-77683784+;Right=chr17:77684511-77684736+;Distance=1204;DiscordantMatePairAlignments=16;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_198082;RightGenes=NM_198082;XRef=;Frequency=0.00
chr17	CG	SV	77683307	77683784	16	+	.	ID=1577;Type=deletion;Left=chr17:77683307-77683784;Right=chr17:77684511-77684736
chr17	CG	SV	77684511	77684736	16	+	.	ID=1577;Type=deletion;Left=chr17:77683307-77683784;Right=chr17:77684511-77684736
chr17	CG	SV	78526192	78528423	23	.	.	ID=1576;Type=deletion;Left=chr17:78526192-78526523+;Right=chr17:78528157-78528423+;Distance=1965;DiscordantMatePairAlignments=23;LeftRepeat=SegDup;Self chain;Tandem period 123;Tandem period 61;RightRepeat=SegDup;Self chain;Tandem period 123;Tandem period 61;LeftGenes=NM_001009905;RightGenes=NM_001009905;XRef=;Frequency=0.00
chr17	CG	SV	78526192	78526523	23	+	.	ID=1576;Type=deletion;Left=chr17:78526192-78526523;Right=chr17:78528157-78528423
chr17	CG	SV	78528157	78528423	23	+	.	ID=1576;Type=deletion;Left=chr17:78526192-78526523;Right=chr17:78528157-78528423
chr18	CG	SV	100852	101744	17	.	.	ID=1559;Type=deletion;Left=chr18:100852-101551+;Right=chr18:101484-101744+;Distance=632;DiscordantMatePairAlignments=17;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	100852	101551	17	+	.	ID=1559;Type=deletion;Left=chr18:100852-101551;Right=chr18:101484-101744
chr18	CG	SV	101484	101744	17	+	.	ID=1559;Type=deletion;Left=chr18:100852-101551;Right=chr18:101484-101744
chr18	CG	SV	3339144	3341550	35	.	.	ID=1551;Type=deletion;Left=chr18:3339144-3339696+;Right=chr18:3341126-3341550+;Distance=1982;DiscordantMatePairAlignments=35;LeftRepeat=AluJo:SINE:Alu;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	3339144	3339696	35	+	.	ID=1551;Type=deletion;Left=chr18:3339144-3339696;Right=chr18:3341126-3341550
chr18	CG	SV	3341126	3341550	35	+	.	ID=1551;Type=deletion;Left=chr18:3339144-3339696;Right=chr18:3341126-3341550
chr18	CG	SV	4503854	4505737	68	.	.	ID=1550;Type=deletion;Left=chr18:4503854-4504287+;Right=chr18:4505326-4505737+;Distance=1472;DiscordantMatePairAlignments=68;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	4503854	4504287	68	+	.	ID=1550;Type=deletion;Left=chr18:4503854-4504287;Right=chr18:4505326-4505737
chr18	CG	SV	4505326	4505737	68	+	.	ID=1550;Type=deletion;Left=chr18:4503854-4504287;Right=chr18:4505326-4505737
chr18	CG	SV	4803798	4804944	86	.	.	ID=1549;Type=deletion;Left=chr18:4803798-4804304+;Right=chr18:4804480-4804944+;Distance=682;DiscordantMatePairAlignments=86;LeftRepeat=LTR36:LTR:ERV1;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72273495 (chr18:4803798-4804480);Frequency=0.12
chr18	CG	SV	4803798	4804304	86	+	.	ID=1549;Type=deletion;Left=chr18:4803798-4804304;Right=chr18:4804480-4804944
chr18	CG	SV	4804480	4804944	86	+	.	ID=1549;Type=deletion;Left=chr18:4803798-4804304;Right=chr18:4804480-4804944
chr18	CG	SV	5314651	5316523	18	.	.	ID=1547;Type=deletion;Left=chr18:5314651-5315089+;Right=chr18:5316244-5316523+;Distance=1593;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=L1PA11:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71657028 (chr18:5314645-5316244);Frequency=0.94
chr18	CG	SV	5314651	5315089	18	+	.	ID=1547;Type=deletion;Left=chr18:5314651-5315089;Right=chr18:5316244-5316523
chr18	CG	SV	5316244	5316523	18	+	.	ID=1547;Type=deletion;Left=chr18:5314651-5315089;Right=chr18:5316244-5316523
chr18	CG	SV	9314175	9317666	53	.	.	ID=1545;Type=deletion;Left=chr18:9314175-9314656+;Right=chr18:9317291-9317666+;Distance=3116;DiscordantMatePairAlignments=53;LeftRepeat=L1MB5:LINE:L1;RightRepeat=Self chain;Tigger1:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	9314175	9314656	53	+	.	ID=1545;Type=deletion;Left=chr18:9314175-9314656;Right=chr18:9317291-9317666
chr18	CG	SV	9317291	9317666	53	+	.	ID=1545;Type=deletion;Left=chr18:9314175-9314656;Right=chr18:9317291-9317666
chr18	CG	SV	9805379	9806604	138	.	.	ID=1543;Type=deletion;Left=chr18:9805379-9806036+;Right=chr18:9806149-9806604+;Distance=770;DiscordantMatePairAlignments=138;LeftRepeat=Self chain;Tandem period 35;RightRepeat=Self chain;Tandem period 13;Tandem period 35;LeftGenes=NM_006868;RightGenes=NM_006868;XRef=;Frequency=0.12
chr18	CG	SV	9805379	9806036	138	+	.	ID=1543;Type=deletion;Left=chr18:9805379-9806036;Right=chr18:9806149-9806604
chr18	CG	SV	9806149	9806604	138	+	.	ID=1543;Type=deletion;Left=chr18:9805379-9806036;Right=chr18:9806149-9806604
chr18	CG	SV	11498894	11501462	17	.	.	ID=81;Type=complex;Left=chr18:11498894-11499263-;Right=chr18:11501292-11501462+;Distance=2029;DiscordantMatePairAlignments=17;LeftRepeat=L1MD:LINE:L1;Self chain;RightRepeat=MIR3:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr18	CG	SV	11498894	11499263	17	-	.	ID=81;Type=complex;Left=chr18:11498894-11499263;Right=chr18:11501292-11501462
chr18	CG	SV	11501292	11501462	17	-	.	ID=81;Type=complex;Left=chr18:11498894-11499263;Right=chr18:11501292-11501462
chr18	CG	SV	11499708	11501792	49	.	.	ID=1542;Type=complex;Left=chr18:11499708-11500145+;Right=chr18:11501477-11501792+;Distance=1769;DiscordantMatePairAlignments=49;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67503649 (chr18:11499705-11501474);Frequency=0.53
chr18	CG	SV	11499708	11500145	49	+	.	ID=1542;Type=complex;Left=chr18:11499708-11500145;Right=chr18:11501477-11501792
chr18	CG	SV	11501477	11501792	49	+	.	ID=1542;Type=complex;Left=chr18:11499708-11500145;Right=chr18:11501477-11501792
chr18	CG	SV	11855086	11857363	99	.	.	ID=1541;Type=deletion;Left=chr18:11855086-11855514+;Right=chr18:11856911-11857363+;Distance=1825;DiscordantMatePairAlignments=99;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001142339;NM_002071;NM_182978;RightGenes=NM_001142339;NM_002071;NM_182978;XRef=;Frequency=0.00
chr18	CG	SV	11855086	11855514	99	+	.	ID=1541;Type=deletion;Left=chr18:11855086-11855514;Right=chr18:11856911-11857363
chr18	CG	SV	11856911	11857363	99	+	.	ID=1541;Type=deletion;Left=chr18:11855086-11855514;Right=chr18:11856911-11857363
chr18	CG	SV	30915970	30916656	10	.	.	ID=1527;Type=deletion;Left=chr18:30915970-30916502+;Right=chr18:30916287-30916656+;Distance=317;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001143826;NM_001143827;NM_014268;NR_026570;RightGenes=NM_001143826;NM_001143827;NM_014268;NR_026570;XRef=rs72399344 (chr18:30915970-30916287);Frequency=0.47
chr18	CG	SV	30915970	30916502	10	+	.	ID=1527;Type=deletion;Left=chr18:30915970-30916502;Right=chr18:30916287-30916656
chr18	CG	SV	30916287	30916656	10	+	.	ID=1527;Type=deletion;Left=chr18:30915970-30916502;Right=chr18:30916287-30916656
chr18	CG	SV	36513891	36521288	85	.	.	ID=1525;Type=deletion;Left=chr18:36513891-36514322+;Right=chr18:36520748-36521288+;Distance=6857;DiscordantMatePairAlignments=85;LeftRepeat=MIRb:SINE:MIR;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr18	CG	SV	36513891	36514322	85	+	.	ID=1525;Type=deletion;Left=chr18:36513891-36514322;Right=chr18:36520748-36521288
chr18	CG	SV	36520748	36521288	85	+	.	ID=1525;Type=deletion;Left=chr18:36513891-36514322;Right=chr18:36520748-36521288
chr18	CG	SV	37118782	37122694	26	.	.	ID=1524;Type=deletion;Left=chr18:37118782-37119067+;Right=chr18:37122341-37122694+;Distance=3559;DiscordantMatePairAlignments=26;LeftRepeat=L1MC1:LINE:L1;RightRepeat=L1ME1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr18	CG	SV	37118782	37119067	26	+	.	ID=1524;Type=deletion;Left=chr18:37118782-37119067;Right=chr18:37122341-37122694
chr18	CG	SV	37122341	37122694	26	+	.	ID=1524;Type=deletion;Left=chr18:37118782-37119067;Right=chr18:37122341-37122694
chr18	CG	SV	39285549	39287053	125	.	.	ID=1522;Type=deletion;Left=chr18:39285549-39285992+;Right=chr18:39286533-39287053+;Distance=984;DiscordantMatePairAlignments=125;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72163979 (chr18:39285542-39286526);Frequency=0.88
chr18	CG	SV	39285549	39285992	125	+	.	ID=1522;Type=deletion;Left=chr18:39285549-39285992;Right=chr18:39286533-39287053
chr18	CG	SV	39286533	39287053	125	+	.	ID=1522;Type=deletion;Left=chr18:39285549-39285992;Right=chr18:39286533-39287053
chr18	CG	SV	42592431	42593346	20	.	.	ID=1519;Type=deletion;Left=chr18:42592431-42592971+;Right=chr18:42592768-42593346+;Distance=337;DiscordantMatePairAlignments=20;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67755507 (chr18:42592415-42592752);Frequency=0.94
chr18	CG	SV	42592431	42592971	20	+	.	ID=1519;Type=deletion;Left=chr18:42592431-42592971;Right=chr18:42592768-42593346
chr18	CG	SV	42592768	42593346	20	+	.	ID=1519;Type=deletion;Left=chr18:42592431-42592971;Right=chr18:42592768-42593346
chr18	CG	SV	45251707	45259798	62	.	.	ID=1518;Type=deletion;Left=chr18:45251707-45251990+;Right=chr18:45259320-45259798+;Distance=7613;DiscordantMatePairAlignments=62;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	45251707	45251990	62	+	.	ID=1518;Type=deletion;Left=chr18:45251707-45251990;Right=chr18:45259320-45259798
chr18	CG	SV	45259320	45259798	62	+	.	ID=1518;Type=deletion;Left=chr18:45251707-45251990;Right=chr18:45259320-45259798
chr18	CG	SV	48716565	48717490	23	.	.	ID=1517;Type=deletion;Left=chr18:48716565-48717054+;Right=chr18:48717030-48717490+;Distance=465;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=;LeftGenes=NM_005215;RightGenes=NM_005215;XRef=rs72465148 (chr18:48716563-48717028);Frequency=0.53
chr18	CG	SV	48716565	48717054	23	+	.	ID=1517;Type=deletion;Left=chr18:48716565-48717054;Right=chr18:48717030-48717490
chr18	CG	SV	48717030	48717490	23	+	.	ID=1517;Type=deletion;Left=chr18:48716565-48717054;Right=chr18:48717030-48717490
chr18	CG	SV	50206966	50211528	188	.	.	ID=1513;Type=deletion;Left=chr18:50206966-50207460+;Right=chr18:50210962-50211528+;Distance=3996;DiscordantMatePairAlignments=188;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66588236 (chr18:50206961-50210957);Frequency=0.94
chr18	CG	SV	50206966	50207460	188	+	.	ID=1513;Type=deletion;Left=chr18:50206966-50207460;Right=chr18:50210962-50211528
chr18	CG	SV	50210962	50211528	188	+	.	ID=1513;Type=deletion;Left=chr18:50206966-50207460;Right=chr18:50210962-50211528
chr18	CG	SV	59036624	59037044	16	.	.	ID=601;Type=tandem-duplication;Left=chr18:59036624-59036814-;Right=chr18:59036818-59037044-;Distance=230;DiscordantMatePairAlignments=16;LeftRepeat=(TCCA)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=NM_000633;RightGenes=NM_000633;XRef=;Frequency=1.00
chr18	CG	SV	59036624	59036814	16	-	.	ID=601;Type=tandem-duplication;Left=chr18:59036624-59036814;Right=chr18:59036818-59037044
chr18	CG	SV	59036818	59037044	16	-	.	ID=601;Type=tandem-duplication;Left=chr18:59036624-59036814;Right=chr18:59036818-59037044
chr18	CG	SV	63446553	63468496	43	.	.	ID=1508;Type=deletion;Left=chr18:63446553-63446981+;Right=chr18:63468226-63468496+;Distance=21673;DiscordantMatePairAlignments=43;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem period 186;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	63446553	63446981	43	+	.	ID=1508;Type=deletion;Left=chr18:63446553-63446981;Right=chr18:63468226-63468496
chr18	CG	SV	63468226	63468496	43	+	.	ID=1508;Type=deletion;Left=chr18:63446553-63446981;Right=chr18:63468226-63468496
chr18	CG	SV	65143796	65145496	70	.	.	ID=1507;Type=deletion;Left=chr18:65143796-65144295+;Right=chr18:65145076-65145496+;Distance=1280;DiscordantMatePairAlignments=70;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs72458073 (chr18:65143795-65145075);Frequency=0.12
chr18	CG	SV	65143796	65144295	70	+	.	ID=1507;Type=deletion;Left=chr18:65143796-65144295;Right=chr18:65145076-65145496
chr18	CG	SV	65145076	65145496	70	+	.	ID=1507;Type=deletion;Left=chr18:65143796-65144295;Right=chr18:65145076-65145496
chr18	CG	SV	66100590	66101547	10	.	.	ID=1506;Type=deletion;Left=chr18:66100590-66101114+;Right=chr18:66100915-66101547+;Distance=325;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72019458 (chr18:66100590-66100915);Frequency=0.76
chr18	CG	SV	66100590	66101114	10	+	.	ID=1506;Type=deletion;Left=chr18:66100590-66101114;Right=chr18:66100915-66101547
chr18	CG	SV	66100915	66101547	10	+	.	ID=1506;Type=deletion;Left=chr18:66100590-66101114;Right=chr18:66100915-66101547
chr18	CG	SV	66997721	66998661	10	.	.	ID=1505;Type=deletion;Left=chr18:66997721-66998086+;Right=chr18:66998055-66998661+;Distance=334;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr18	CG	SV	66997721	66998086	10	+	.	ID=1505;Type=deletion;Left=chr18:66997721-66998086;Right=chr18:66998055-66998661
chr18	CG	SV	66998055	66998661	10	+	.	ID=1505;Type=deletion;Left=chr18:66997721-66998086;Right=chr18:66998055-66998661
chr18	CG	SV	75061604	75061767	130	.	.	ID=600;Type=tandem-duplication;Left=chr18:75061604-75061691-;Right=chr18:75061674-75061767-;Distance=76;DiscordantMatePairAlignments=130;LeftRepeat=Self chain;Tandem period 33;RightRepeat=G-rich:Low_complexity:Low_complexity;Self chain;LeftGenes=NM_198531;RightGenes=NM_198531;XRef=;Frequency=1.00
chr18	CG	SV	75061604	75061691	130	-	.	ID=600;Type=tandem-duplication;Left=chr18:75061604-75061691;Right=chr18:75061674-75061767
chr18	CG	SV	75061674	75061767	130	-	.	ID=600;Type=tandem-duplication;Left=chr18:75061604-75061691;Right=chr18:75061674-75061767
chr18	CG	SV	75411043	75413451	47	.	.	ID=1493;Type=deletion;Left=chr18:75411043-75411524+;Right=chr18:75413080-75413451+;Distance=2037;DiscordantMatePairAlignments=47;LeftRepeat=Self chain;Tandem period 54;RightRepeat=Self chain;Tandem period 54;LeftGenes=;RightGenes=;XRef=rs71172180 (chr18:75410938-75413079);Frequency=0.59
chr18	CG	SV	75411043	75411524	47	+	.	ID=1493;Type=deletion;Left=chr18:75411043-75411524;Right=chr18:75413080-75413451
chr18	CG	SV	75413080	75413451	47	+	.	ID=1493;Type=deletion;Left=chr18:75411043-75411524;Right=chr18:75413080-75413451
chr19	CG	SV	374202	375101	16	.	.	ID=1491;Type=deletion;Left=chr19:374202-374662+;Right=chr19:374690-375101+;Distance=488;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 61;RightRepeat=Self chain;LeftGenes=NM_012435;RightGenes=NM_012435;XRef=rs72175445 (chr19:374099-374587);Frequency=0.65
chr19	CG	SV	374202	374662	16	+	.	ID=1491;Type=deletion;Left=chr19:374202-374662;Right=chr19:374690-375101
chr19	CG	SV	374690	375101	16	+	.	ID=1491;Type=deletion;Left=chr19:374202-374662;Right=chr19:374690-375101
chr19	CG	SV	495794	496080	15	.	.	ID=599;Type=tandem-duplication;Left=chr19:495794-495944-;Right=chr19:495977-496080-;Distance=136;DiscordantMatePairAlignments=15;LeftRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=CT-rich:Low_complexity:Low_complexity;Self chain;LeftGenes=NM_005317;RightGenes=NM_005317;XRef=;Frequency=0.35
chr19	CG	SV	495794	495944	15	-	.	ID=599;Type=tandem-duplication;Left=chr19:495794-495944;Right=chr19:495977-496080
chr19	CG	SV	495977	496080	15	-	.	ID=599;Type=tandem-duplication;Left=chr19:495794-495944;Right=chr19:495977-496080
chr19	CG	SV	980118	981032	20	.	.	ID=1490;Type=deletion;Left=chr19:980118-980527+;Right=chr19:980596-981032+;Distance=478;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;Tandem period 159;Tandem period 40;RightRepeat=Self chain;LeftGenes=NM_004368;NM_201277;RightGenes=NM_004368;NM_201277;XRef=;Frequency=0.65
chr19	CG	SV	980118	980527	20	+	.	ID=1490;Type=deletion;Left=chr19:980118-980527;Right=chr19:980596-981032
chr19	CG	SV	980596	981032	20	+	.	ID=1490;Type=deletion;Left=chr19:980118-980527;Right=chr19:980596-981032
chr19	CG	SV	4690346	4690558	11	.	.	ID=3439;Type=probable-inversion;Left=chr19:4690346-4690902+;Right=chr19:4690429-4690558-;Distance=212;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr19	CG	SV	4690346	4690902	11	+	.	ID=3439;Type=probable-inversion;Left=chr19:4690346-4690902;Right=chr19:4690429-4690558
chr19	CG	SV	4690429	4690558	11	+	.	ID=3439;Type=probable-inversion;Left=chr19:4690346-4690902;Right=chr19:4690429-4690558
chr19	CG	SV	13598123	13599759	15	.	.	ID=591;Type=tandem-duplication;Left=chr19:13598123-13598523-;Right=chr19:13599438-13599759-;Distance=1236;DiscordantMatePairAlignments=15;LeftRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;Tandem GGAAG;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr19	CG	SV	13598123	13598523	15	-	.	ID=591;Type=tandem-duplication;Left=chr19:13598123-13598523;Right=chr19:13599438-13599759
chr19	CG	SV	13599438	13599759	15	-	.	ID=591;Type=tandem-duplication;Left=chr19:13598123-13598523;Right=chr19:13599438-13599759
chr19	CG	SV	13630650	13631544	11	.	.	ID=1480;Type=deletion;Left=chr19:13630650-13631092+;Right=chr19:13631382-13631544+;Distance=732;DiscordantMatePairAlignments=11;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	13630650	13631092	11	+	.	ID=1480;Type=deletion;Left=chr19:13630650-13631092;Right=chr19:13631382-13631544
chr19	CG	SV	13631382	13631544	11	+	.	ID=1480;Type=deletion;Left=chr19:13630650-13631092;Right=chr19:13631382-13631544
chr19	CG	SV	14593345	14595673	15	.	.	ID=1479;Type=deletion;Left=chr19:14593345-14593424+;Right=chr19:14595142-14595673+;Distance=1797;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=AluJ/FLAM:SINE:Alu;Self chain;LeftGenes=NM_032571;RightGenes=NM_032571;XRef=rs71171910 (chr19:14593345-14595142);Frequency=0.65
chr19	CG	SV	14593345	14593424	15	+	.	ID=1479;Type=deletion;Left=chr19:14593345-14593424;Right=chr19:14595142-14595673
chr19	CG	SV	14595142	14595673	15	+	.	ID=1479;Type=deletion;Left=chr19:14593345-14593424;Right=chr19:14595142-14595673
chr19	CG	SV	20302751	20303755	10	.	.	ID=1477;Type=deletion;Left=chr19:20302751-20303018+;Right=chr19:20303429-20303755+;Distance=678;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	20302751	20303018	10	+	.	ID=1477;Type=deletion;Left=chr19:20302751-20303018;Right=chr19:20303429-20303755
chr19	CG	SV	20303429	20303755	10	+	.	ID=1477;Type=deletion;Left=chr19:20302751-20303018;Right=chr19:20303429-20303755
chr19	CG	SV	20377009	20380304	22	.	.	ID=1476;Type=deletion;Left=chr19:20377009-20377371+;Right=chr19:20379861-20380304+;Distance=2852;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;RightRepeat=L1MB2:LINE:L1;Self chain;LeftGenes=NM_001039884;RightGenes=NM_001039884;XRef=rs72102339 (chr19:20377009-20379861);Frequency=0.88
chr19	CG	SV	20377009	20377371	22	+	.	ID=1476;Type=deletion;Left=chr19:20377009-20377371;Right=chr19:20379861-20380304
chr19	CG	SV	20379861	20380304	22	+	.	ID=1476;Type=deletion;Left=chr19:20377009-20377371;Right=chr19:20379861-20380304
chr19	CG	SV	23727364	23728232	10	.	.	ID=588;Type=tandem-duplication;Left=chr19:23727364-23727767-;Right=chr19:23728130-23728232-;Distance=465;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_138286;RightGenes=NM_138286;XRef=;Frequency=1.00
chr19	CG	SV	23727364	23727767	10	-	.	ID=588;Type=tandem-duplication;Left=chr19:23727364-23727767;Right=chr19:23728130-23728232
chr19	CG	SV	23728130	23728232	10	-	.	ID=588;Type=tandem-duplication;Left=chr19:23727364-23727767;Right=chr19:23728130-23728232
chr19	CG	SV	34642030	34648458	119	.	.	ID=1459;Type=deletion;Left=chr19:34642030-34642485+;Right=chr19:34648013-34648458+;Distance=5983;DiscordantMatePairAlignments=119;LeftRepeat=HAL1b:LINE:L1;Self chain;RightRepeat=HAL1b:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs72413604 (chr19:34642037-34648020);Frequency=0.59
chr19	CG	SV	34642030	34642485	119	+	.	ID=1459;Type=deletion;Left=chr19:34642030-34642485;Right=chr19:34648013-34648458
chr19	CG	SV	34648013	34648458	119	+	.	ID=1459;Type=deletion;Left=chr19:34642030-34642485;Right=chr19:34648013-34648458
chr19	CG	SV	34749742	34750789	10	.	.	ID=1458;Type=deletion;Left=chr19:34749742-34750008+;Right=chr19:34750502-34750789+;Distance=760;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 26;Tandem period 79;RightRepeat=Self chain;Tandem period 26;Tandem period 79;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	34749742	34750008	10	+	.	ID=1458;Type=deletion;Left=chr19:34749742-34750008;Right=chr19:34750502-34750789
chr19	CG	SV	34750502	34750789	10	+	.	ID=1458;Type=deletion;Left=chr19:34749742-34750008;Right=chr19:34750502-34750789
chr19	CG	SV	35080656	35085514	33	.	.	ID=1457;Type=deletion;Left=chr19:35080656-35081098+;Right=chr19:35084966-35085514+;Distance=4310;DiscordantMatePairAlignments=33;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem ATTTTT;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	35080656	35081098	33	+	.	ID=1457;Type=deletion;Left=chr19:35080656-35081098;Right=chr19:35084966-35085514
chr19	CG	SV	35084966	35085514	33	+	.	ID=1457;Type=deletion;Left=chr19:35080656-35081098;Right=chr19:35084966-35085514
chr19	CG	SV	45304944	45308156	31	.	.	ID=1450;Type=deletion;Left=chr19:45304944-45305356+;Right=chr19:45307615-45308156+;Distance=2671;DiscordantMatePairAlignments=31;LeftRepeat=Self chain;Tandem T;RightRepeat=MER101-int:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr19	CG	SV	45304944	45305356	31	+	.	ID=1450;Type=deletion;Left=chr19:45304944-45305356;Right=chr19:45307615-45308156
chr19	CG	SV	45307615	45308156	31	+	.	ID=1450;Type=deletion;Left=chr19:45304944-45305356;Right=chr19:45307615-45308156
chr19	CG	SV	45845112	45848093	11	.	.	ID=1448;Type=deletion;Left=chr19:45845112-45845443+;Right=chr19:45847858-45848093+;Distance=2746;DiscordantMatePairAlignments=11;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr19	CG	SV	45845112	45845443	11	+	.	ID=1448;Type=deletion;Left=chr19:45845112-45845443;Right=chr19:45847858-45848093
chr19	CG	SV	45847858	45848093	11	+	.	ID=1448;Type=deletion;Left=chr19:45845112-45845443;Right=chr19:45847858-45848093
chr19	CG	SV	48673227	48674227	48	.	.	ID=1447;Type=deletion;Left=chr19:48673227-48673641+;Right=chr19:48673831-48674227+;Distance=604;DiscordantMatePairAlignments=48;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_198850;RightGenes=NM_198850;XRef=;Frequency=0.00
chr19	CG	SV	48673227	48673641	48	+	.	ID=1447;Type=deletion;Left=chr19:48673227-48673641;Right=chr19:48673831-48674227
chr19	CG	SV	48673831	48674227	48	+	.	ID=1447;Type=deletion;Left=chr19:48673227-48673641;Right=chr19:48673831-48674227
chr19	CG	SV	48874748	48875794	28	.	.	ID=567;Type=tandem-duplication;Left=chr19:48874748-48875206-;Right=chr19:48875548-48875794-;Distance=588;DiscordantMatePairAlignments=28;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	48874748	48875206	28	-	.	ID=567;Type=tandem-duplication;Left=chr19:48874748-48875206;Right=chr19:48875548-48875794
chr19	CG	SV	48875548	48875794	28	-	.	ID=567;Type=tandem-duplication;Left=chr19:48874748-48875206;Right=chr19:48875548-48875794
chr19	CG	SV	50165018	50166415	15	.	.	ID=1446;Type=deletion;Left=chr19:50165018-50165432+;Right=chr19:50166162-50166415+;Distance=1144;DiscordantMatePairAlignments=15;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSq:SINE:Alu;Self chain;LeftGenes=NM_001294;RightGenes=NM_001294;XRef=;Frequency=0.00
chr19	CG	SV	50165018	50165432	15	+	.	ID=1446;Type=deletion;Left=chr19:50165018-50165432;Right=chr19:50166162-50166415
chr19	CG	SV	50166162	50166415	15	+	.	ID=1446;Type=deletion;Left=chr19:50165018-50165432;Right=chr19:50166162-50166415
chr19	CG	SV	51949413	51950318	34	.	.	ID=1443;Type=deletion;Left=chr19:51949413-51949936+;Right=chr19:51949981-51950318+;Distance=568;DiscordantMatePairAlignments=34;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_001039885;NM_024301;RightGenes=NM_001039885;NM_024301;XRef=;Frequency=0.00
chr19	CG	SV	51949413	51949936	34	+	.	ID=1443;Type=deletion;Left=chr19:51949413-51949936;Right=chr19:51949981-51950318
chr19	CG	SV	51949981	51950318	34	+	.	ID=1443;Type=deletion;Left=chr19:51949413-51949936;Right=chr19:51949981-51950318
chr19	CG	SV	54639867	54640466	14	.	.	ID=566;Type=tandem-duplication;Left=chr19:54639867-54640159-;Right=chr19:54640166-54640466-;Distance=307;DiscordantMatePairAlignments=14;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	54639867	54640159	14	-	.	ID=566;Type=tandem-duplication;Left=chr19:54639867-54640159;Right=chr19:54640166-54640466
chr19	CG	SV	54640166	54640466	14	-	.	ID=566;Type=tandem-duplication;Left=chr19:54639867-54640159;Right=chr19:54640166-54640466
chr19	CG	SV	55060827	55061776	78	.	.	ID=1442;Type=deletion;Left=chr19:55060827-55061269+;Right=chr19:55061348-55061776+;Distance=521;DiscordantMatePairAlignments=78;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=NM_007254;RightGenes=NM_007254;XRef=;Frequency=0.00
chr19	CG	SV	55060827	55061269	78	+	.	ID=1442;Type=deletion;Left=chr19:55060827-55061269;Right=chr19:55061348-55061776
chr19	CG	SV	55061348	55061776	78	+	.	ID=1442;Type=deletion;Left=chr19:55060827-55061269;Right=chr19:55061348-55061776
chr19	CG	SV	56867749	56869748	57	.	.	ID=1439;Type=deletion;Left=chr19:56867749-56868189+;Right=chr19:56869333-56869748+;Distance=1584;DiscordantMatePairAlignments=57;LeftRepeat=Self chain;RightRepeat=L1ME3B:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71171955 (chr19:56867749-56869333);Frequency=1.00
chr19	CG	SV	56867749	56868189	57	+	.	ID=1439;Type=deletion;Left=chr19:56867749-56868189;Right=chr19:56869333-56869748
chr19	CG	SV	56869333	56869748	57	+	.	ID=1439;Type=deletion;Left=chr19:56867749-56868189;Right=chr19:56869333-56869748
chr19	CG	SV	57580628	57583673	29	.	.	ID=1438;Type=deletion;Left=chr19:57580628-57581022+;Right=chr19:57583198-57583673+;Distance=2570;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_001145434;RightGenes=;XRef=rs67071551 (chr19:57580628-57583197);Frequency=0.29
chr19	CG	SV	57580628	57581022	29	+	.	ID=1438;Type=deletion;Left=chr19:57580628-57581022;Right=chr19:57583198-57583673
chr19	CG	SV	57583198	57583673	29	+	.	ID=1438;Type=deletion;Left=chr19:57580628-57581022;Right=chr19:57583198-57583673
chr19	CG	SV	57774118	57775449	14	.	.	ID=1437;Type=deletion;Left=chr19:57774118-57774583+;Right=chr19:57775303-57775449+;Distance=1185;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_018260;RightGenes=NM_018260;XRef=;Frequency=0.10
chr19	CG	SV	57774118	57774583	14	+	.	ID=1437;Type=deletion;Left=chr19:57774118-57774583;Right=chr19:57775303-57775449
chr19	CG	SV	57775303	57775449	14	+	.	ID=1437;Type=deletion;Left=chr19:57774118-57774583;Right=chr19:57775303-57775449
chr19	CG	SV	58114013	58116249	15	.	.	ID=1436;Type=deletion;Left=chr19:58114013-58114599+;Right=chr19:58116023-58116249+;Distance=2010;DiscordantMatePairAlignments=15;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr19	CG	SV	58114013	58114599	15	+	.	ID=1436;Type=deletion;Left=chr19:58114013-58114599;Right=chr19:58116023-58116249
chr19	CG	SV	58116023	58116249	15	+	.	ID=1436;Type=deletion;Left=chr19:58114013-58114599;Right=chr19:58116023-58116249
chr19	CG	SV	58380998	58384364	50	.	.	ID=1435;Type=deletion;Left=chr19:58380998-58381286+;Right=chr19:58383780-58384364+;Distance=2782;DiscordantMatePairAlignments=50;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;Tandem T;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_024733;RightGenes=NM_024733;XRef=;Frequency=1.00
chr19	CG	SV	58380998	58381286	50	+	.	ID=1435;Type=deletion;Left=chr19:58380998-58381286;Right=chr19:58383780-58384364
chr19	CG	SV	58383780	58384364	50	+	.	ID=1435;Type=deletion;Left=chr19:58380998-58381286;Right=chr19:58383780-58384364
chr19	CG	SV	60296607	60297727	16	.	.	ID=1432;Type=deletion;Left=chr19:60296607-60297037+;Right=chr19:60297515-60297727+;Distance=908;DiscordantMatePairAlignments=16;LeftRepeat=MSR1:Satellite:Satellite;Self chain;Tandem period 109;Tandem period 36;Tandem period 73;RightRepeat=Self chain;LeftGenes=NM_017607;RightGenes=NM_017607;XRef=;Frequency=0.82
chr19	CG	SV	60296607	60297037	16	+	.	ID=1432;Type=deletion;Left=chr19:60296607-60297037;Right=chr19:60297515-60297727
chr19	CG	SV	60297515	60297727	16	+	.	ID=1432;Type=deletion;Left=chr19:60296607-60297037;Right=chr19:60297515-60297727
chr19	CG	SV	60903295	60903993	20	.	.	ID=1430;Type=deletion;Left=chr19:60903295-60903741+;Right=chr19:60903760-60903993+;Distance=465;DiscordantMatePairAlignments=20;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	60903295	60903741	20	+	.	ID=1430;Type=deletion;Left=chr19:60903295-60903741;Right=chr19:60903760-60903993
chr19	CG	SV	60903760	60903993	20	+	.	ID=1430;Type=deletion;Left=chr19:60903295-60903741;Right=chr19:60903760-60903993
chr19	CG	SV	61843571	61844614	51	.	.	ID=1427;Type=deletion;Left=chr19:61843571-61843859+;Right=chr19:61844140-61844614+;Distance=569;DiscordantMatePairAlignments=51;LeftRepeat=Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=rs72273730 (chr19:61843570-61844139);Frequency=0.00
chr19	CG	SV	61843571	61843859	51	+	.	ID=1427;Type=deletion;Left=chr19:61843571-61843859;Right=chr19:61844140-61844614
chr19	CG	SV	61844140	61844614	51	+	.	ID=1427;Type=deletion;Left=chr19:61843571-61843859;Right=chr19:61844140-61844614
chr19	CG	SV	61872699	61873763	29	.	.	ID=1426;Type=deletion;Left=chr19:61872699-61873050+;Right=chr19:61873339-61873763+;Distance=640;DiscordantMatePairAlignments=29;LeftRepeat=MER21C:LTR:ERV1;Self chain;Tandem period 40;RightRepeat=Self chain;Tandem period 40;LeftGenes=NM_001005850;RightGenes=NM_001005850;XRef=rs71925271 (chr19:61872677-61873077);Frequency=0.06
chr19	CG	SV	61872699	61873050	29	+	.	ID=1426;Type=deletion;Left=chr19:61872699-61873050;Right=chr19:61873339-61873763
chr19	CG	SV	61873339	61873763	29	+	.	ID=1426;Type=deletion;Left=chr19:61872699-61873050;Right=chr19:61873339-61873763
chr19	CG	SV	62166719	62167896	82	.	.	ID=1425;Type=deletion;Left=chr19:62166719-62167147+;Right=chr19:62167423-62167896+;Distance=704;DiscordantMatePairAlignments=82;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72319526 (chr19:62166717-62167421);Frequency=0.71
chr19	CG	SV	62166719	62167147	82	+	.	ID=1425;Type=deletion;Left=chr19:62166719-62167147;Right=chr19:62167423-62167896
chr19	CG	SV	62167423	62167896	82	+	.	ID=1425;Type=deletion;Left=chr19:62166719-62167147;Right=chr19:62167423-62167896
chr20	CG	SV	2164842	2165103	226	.	.	ID=564;Type=tandem-duplication;Left=chr20:2164842-2164983-;Right=chr20:2164969-2165103-;Distance=120;DiscordantMatePairAlignments=226;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr20	CG	SV	2164842	2164983	226	-	.	ID=564;Type=tandem-duplication;Left=chr20:2164842-2164983;Right=chr20:2164969-2165103
chr20	CG	SV	2164969	2165103	226	-	.	ID=564;Type=tandem-duplication;Left=chr20:2164842-2164983;Right=chr20:2164969-2165103
chr20	CG	SV	2307583	2308614	25	.	.	ID=563;Type=distal-duplication;Left=chr20:2307583-2307701-;Right=chr20:2308098-2308614-;Distance=913;DiscordantMatePairAlignments=25;LeftRepeat=MIR3:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr20	CG	SV	2307583	2307701	25	-	.	ID=563;Type=distal-duplication;Left=chr20:2307583-2307701;Right=chr20:2308098-2308614
chr20	CG	SV	2308098	2308614	25	-	.	ID=563;Type=distal-duplication;Left=chr20:2307583-2307701;Right=chr20:2308098-2308614
chr20	CG	SV	2307903	2309003	44	.	.	ID=1424;Type=distal-duplication;Left=chr20:2307903-2308110+;Right=chr20:2308608-2309003+;Distance=705;DiscordantMatePairAlignments=44;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67473611 (chr20:2307903-2308608);Frequency=0.76
chr20	CG	SV	2307903	2308110	44	+	.	ID=1424;Type=distal-duplication;Left=chr20:2307903-2308110;Right=chr20:2308608-2309003
chr20	CG	SV	2308608	2309003	44	+	.	ID=1424;Type=distal-duplication;Left=chr20:2307903-2308110;Right=chr20:2308608-2309003
chr20	CG	SV	2751162	2754829	150	.	.	ID=1423;Type=deletion;Left=chr20:2751162-2751582+;Right=chr20:2754424-2754829+;Distance=3262;DiscordantMatePairAlignments=150;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67741425 (chr20:2751162-2754424);Frequency=0.65
chr20	CG	SV	2751162	2751582	150	+	.	ID=1423;Type=deletion;Left=chr20:2751162-2751582;Right=chr20:2754424-2754829
chr20	CG	SV	2754424	2754829	150	+	.	ID=1423;Type=deletion;Left=chr20:2751162-2751582;Right=chr20:2754424-2754829
chr20	CG	SV	3743028	3743993	17	.	.	ID=1422;Type=deletion;Left=chr20:3743028-3743334+;Right=chr20:3743452-3743993+;Distance=424;DiscordantMatePairAlignments=17;LeftRepeat=(TAAA)n:Simple_repeat:Simple_repeat;Tandem AAAT;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr20	CG	SV	3743028	3743334	17	+	.	ID=1422;Type=deletion;Left=chr20:3743028-3743334;Right=chr20:3743452-3743993
chr20	CG	SV	3743452	3743993	17	+	.	ID=1422;Type=deletion;Left=chr20:3743028-3743334;Right=chr20:3743452-3743993
chr20	CG	SV	3960510	3964768	18	.	.	ID=1421;Type=deletion;Left=chr20:3960510-3960961+;Right=chr20:3964482-3964768+;Distance=3972;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;U6:snRNA:snRNA;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr20	CG	SV	3960510	3960961	18	+	.	ID=1421;Type=deletion;Left=chr20:3960510-3960961;Right=chr20:3964482-3964768
chr20	CG	SV	3964482	3964768	18	+	.	ID=1421;Type=deletion;Left=chr20:3960510-3960961;Right=chr20:3964482-3964768
chr20	CG	SV	5737557	5739881	58	.	.	ID=1419;Type=deletion;Left=chr20:5737557-5737910+;Right=chr20:5739403-5739881+;Distance=1846;DiscordantMatePairAlignments=58;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_152504;RightGenes=NM_152504;XRef=;Frequency=0.00
chr20	CG	SV	5737557	5737910	58	+	.	ID=1419;Type=deletion;Left=chr20:5737557-5737910;Right=chr20:5739403-5739881
chr20	CG	SV	5739403	5739881	58	+	.	ID=1419;Type=deletion;Left=chr20:5737557-5737910;Right=chr20:5739403-5739881
chr20	CG	SV	7044793	7051378	109	.	.	ID=1416;Type=deletion;Left=chr20:7044793-7045307+;Right=chr20:7050858-7051378+;Distance=6065;DiscordantMatePairAlignments=109;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66718658 (chr20:7044793-7050858);Frequency=0.35
chr20	CG	SV	7044793	7045307	109	+	.	ID=1416;Type=deletion;Left=chr20:7044793-7045307;Right=chr20:7050858-7051378
chr20	CG	SV	7050858	7051378	109	+	.	ID=1416;Type=deletion;Left=chr20:7044793-7045307;Right=chr20:7050858-7051378
chr20	CG	SV	7346707	7352141	72	.	.	ID=1415;Type=deletion;Left=chr20:7346707-7347146+;Right=chr20:7351594-7352141+;Distance=4887;DiscordantMatePairAlignments=72;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr20	CG	SV	7346707	7347146	72	+	.	ID=1415;Type=deletion;Left=chr20:7346707-7347146;Right=chr20:7351594-7352141
chr20	CG	SV	7351594	7352141	72	+	.	ID=1415;Type=deletion;Left=chr20:7346707-7347146;Right=chr20:7351594-7352141
chr20	CG	SV	11465278	11465907	12	.	.	ID=1414;Type=deletion;Left=chr20:11465278-11465809+;Right=chr20:11465601-11465907+;Distance=323;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr20	CG	SV	11465278	11465809	12	+	.	ID=1414;Type=deletion;Left=chr20:11465278-11465809;Right=chr20:11465601-11465907
chr20	CG	SV	11465601	11465907	12	+	.	ID=1414;Type=deletion;Left=chr20:11465278-11465809;Right=chr20:11465601-11465907
chr20	CG	SV	14425294	14427378	55	.	.	ID=1413;Type=deletion;Left=chr20:14425294-14425729+;Right=chr20:14426956-14427378+;Distance=1662;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=;LeftGenes=NM_080676;RightGenes=NM_080676;XRef=rs71637934 (chr20:14425293-14426955);Frequency=0.00
chr20	CG	SV	14425294	14425729	55	+	.	ID=1413;Type=deletion;Left=chr20:14425294-14425729;Right=chr20:14426956-14427378
chr20	CG	SV	14426956	14427378	55	+	.	ID=1413;Type=deletion;Left=chr20:14425294-14425729;Right=chr20:14426956-14427378
chr20	CG	SV	17772869	17773887	13	.	.	ID=1410;Type=deletion;Left=chr20:17772869-17773256+;Right=chr20:17773355-17773887+;Distance=486;DiscordantMatePairAlignments=13;LeftRepeat=L2:LINE:L2;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr20	CG	SV	17772869	17773256	13	+	.	ID=1410;Type=deletion;Left=chr20:17772869-17773256;Right=chr20:17773355-17773887
chr20	CG	SV	17773355	17773887	13	+	.	ID=1410;Type=deletion;Left=chr20:17772869-17773256;Right=chr20:17773355-17773887
chr20	CG	SV	23051303	23052149	10	.	.	ID=1407;Type=deletion;Left=chr20:23051303-23051762+;Right=chr20:23051632-23052149+;Distance=329;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr20	CG	SV	23051303	23051762	10	+	.	ID=1407;Type=deletion;Left=chr20:23051303-23051762;Right=chr20:23051632-23052149
chr20	CG	SV	23051632	23052149	10	+	.	ID=1407;Type=deletion;Left=chr20:23051303-23051762;Right=chr20:23051632-23052149
chr20	CG	SV	24336755	24337972	44	.	.	ID=1406;Type=deletion;Left=chr20:24336755-24337212+;Right=chr20:24337583-24337972+;Distance=828;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;Tandem period 46;RightRepeat=Self chain;Tandem period 46;LeftGenes=;RightGenes=;XRef=rs71834142 (chr20:24336649-24337477);Frequency=0.18
chr20	CG	SV	24336755	24337212	44	+	.	ID=1406;Type=deletion;Left=chr20:24336755-24337212;Right=chr20:24337583-24337972
chr20	CG	SV	24337583	24337972	44	+	.	ID=1406;Type=deletion;Left=chr20:24336755-24337212;Right=chr20:24337583-24337972
chr20	CG	SV	28252473	28255533	77	.	.	ID=1403;Type=deletion;Left=chr20:28252473-28252941+;Right=chr20:28255076-28255533+;Distance=2603;DiscordantMatePairAlignments=77;LeftRepeat=Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr20	CG	SV	28252473	28252941	77	+	.	ID=1403;Type=deletion;Left=chr20:28252473-28252941;Right=chr20:28255076-28255533
chr20	CG	SV	28255076	28255533	77	+	.	ID=1403;Type=deletion;Left=chr20:28252473-28252941;Right=chr20:28255076-28255533
chr20	CG	SV	30791087	30792045	30	.	.	ID=1402;Type=deletion;Left=chr20:30791087-30791587+;Right=chr20:30791759-30792045+;Distance=672;DiscordantMatePairAlignments=30;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_001099339;NM_053041;RightGenes=NM_001099339;NM_053041;XRef=;Frequency=0.47
chr20	CG	SV	30791087	30791587	30	+	.	ID=1402;Type=deletion;Left=chr20:30791087-30791587;Right=chr20:30791759-30792045
chr20	CG	SV	30791759	30792045	30	+	.	ID=1402;Type=deletion;Left=chr20:30791087-30791587;Right=chr20:30791759-30792045
chr20	CG	SV	32279594	32283361	108	.	.	ID=1400;Type=deletion;Left=chr20:32279594-32280008+;Right=chr20:32282891-32283361+;Distance=3297;DiscordantMatePairAlignments=108;LeftRepeat=L1M5:LINE:L1;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71190078 (chr20:32279599-32282896);Frequency=1.00
chr20	CG	SV	32279594	32280008	108	+	.	ID=1400;Type=deletion;Left=chr20:32279594-32280008;Right=chr20:32282891-32283361
chr20	CG	SV	32282891	32283361	108	+	.	ID=1400;Type=deletion;Left=chr20:32279594-32280008;Right=chr20:32282891-32283361
chr20	CG	SV	39339895	39341392	14	.	.	ID=1389;Type=deletion;Left=chr20:39339895-39340301+;Right=chr20:39341076-39341392+;Distance=1181;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_015035;RightGenes=NM_015035;XRef=;Frequency=0.06
chr20	CG	SV	39339895	39340301	14	+	.	ID=1389;Type=deletion;Left=chr20:39339895-39340301;Right=chr20:39341076-39341392
chr20	CG	SV	39341076	39341392	14	+	.	ID=1389;Type=deletion;Left=chr20:39339895-39340301;Right=chr20:39341076-39341392
chr20	CG	SV	41458016	41459715	123	.	.	ID=1388;Type=deletion;Left=chr20:41458016-41458537+;Right=chr20:41459214-41459715+;Distance=1198;DiscordantMatePairAlignments=123;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67207892 (chr20:41458026-41459224);Frequency=0.94
chr20	CG	SV	41458016	41458537	123	+	.	ID=1388;Type=deletion;Left=chr20:41458016-41458537;Right=chr20:41459214-41459715
chr20	CG	SV	41459214	41459715	123	+	.	ID=1388;Type=deletion;Left=chr20:41458016-41458537;Right=chr20:41459214-41459715
chr20	CG	SV	41757834	41758816	68	.	.	ID=549;Type=tandem-duplication;Left=chr20:41757834-41758312-;Right=chr20:41758579-41758816-;Distance=504;DiscordantMatePairAlignments=68;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_002466;RightGenes=NM_002466;XRef=;Frequency=1.00
chr20	CG	SV	41757834	41758312	68	-	.	ID=549;Type=tandem-duplication;Left=chr20:41757834-41758312;Right=chr20:41758579-41758816
chr20	CG	SV	41758579	41758816	68	-	.	ID=549;Type=tandem-duplication;Left=chr20:41757834-41758312;Right=chr20:41758579-41758816
chr20	CG	SV	42760727	42763318	134	.	.	ID=1386;Type=deletion;Left=chr20:42760727-42761199+;Right=chr20:42762938-42763318+;Distance=2211;DiscordantMatePairAlignments=134;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr20	CG	SV	42760727	42761199	134	+	.	ID=1386;Type=deletion;Left=chr20:42760727-42761199;Right=chr20:42762938-42763318
chr20	CG	SV	42762938	42763318	134	+	.	ID=1386;Type=deletion;Left=chr20:42760727-42761199;Right=chr20:42762938-42763318
chr20	CG	SV	45956798	45957077	11	.	.	ID=547;Type=complex;Left=chr20:45956798-45956881-;Right=chr20:45956873-45957077-;Distance=196;DiscordantMatePairAlignments=11;LeftRepeat=D20S16:Satellite:Satellite;SegDup;Self chain;Tandem period 49;Tandem period 98;RightRepeat=D20S16:Satellite:Satellite;SegDup;Self chain;Tandem period 49;Tandem period 98;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr20	CG	SV	45956798	45956881	11	-	.	ID=547;Type=complex;Left=chr20:45956798-45956881;Right=chr20:45956873-45957077
chr20	CG	SV	45956873	45957077	11	-	.	ID=547;Type=complex;Left=chr20:45956798-45956881;Right=chr20:45956873-45957077
chr20	CG	SV	45956497	45958031	10	.	.	ID=548;Type=complex;Left=chr20:45956497-45956881-;Right=chr20:45957463-45958031-;Distance=1150;DiscordantMatePairAlignments=10;LeftRepeat=D20S16:Satellite:Satellite;SegDup;Self chain;Tandem period 49;Tandem period 98;RightRepeat=D20S16:Satellite:Satellite;SegDup;Self chain;Tandem period 49;Tandem period 98;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr20	CG	SV	45956497	45956881	10	-	.	ID=548;Type=complex;Left=chr20:45956497-45956881;Right=chr20:45957463-45958031
chr20	CG	SV	45957463	45958031	10	-	.	ID=548;Type=complex;Left=chr20:45956497-45956881;Right=chr20:45957463-45958031
chr20	CG	SV	45956781	46566357	10	.	.	ID=38;Type=complex;Left=chr20:45956781-45956881-;Right=chr20:46566261-46566357+;Distance=609380;DiscordantMatePairAlignments=10;LeftRepeat=D20S16:Satellite:Satellite;SegDup;Self chain;Tandem period 49;Tandem period 98;RightRepeat=D20S16:Satellite:Satellite;SegDup;Self chain;Tandem period 49;Tandem period 98;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr20	CG	SV	45956781	45956881	10	-	.	ID=38;Type=complex;Left=chr20:45956781-45956881;Right=chr20:46566261-46566357
chr20	CG	SV	46566261	46566357	10	-	.	ID=38;Type=complex;Left=chr20:45956781-45956881;Right=chr20:46566261-46566357
chr20	CG	SV	46535495	46537248	12	.	.	ID=1385;Type=deletion;Left=chr20:46535495-46535831+;Right=chr20:46536867-46537248+;Distance=1372;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem period 106;Tandem period 53;RightRepeat=D20S16:Satellite:Satellite;Self chain;Tandem period 106;Tandem period 53;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr20	CG	SV	46535495	46535831	12	+	.	ID=1385;Type=deletion;Left=chr20:46535495-46535831;Right=chr20:46536867-46537248
chr20	CG	SV	46536867	46537248	12	+	.	ID=1385;Type=deletion;Left=chr20:46535495-46535831;Right=chr20:46536867-46537248
chr20	CG	SV	47375472	47375663	17	.	.	ID=546;Type=tandem-duplication;Left=chr20:47375472-47375581-;Right=chr20:47375547-47375663-;Distance=82;DiscordantMatePairAlignments=17;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr20	CG	SV	47375472	47375581	17	-	.	ID=546;Type=tandem-duplication;Left=chr20:47375472-47375581;Right=chr20:47375547-47375663
chr20	CG	SV	47375547	47375663	17	-	.	ID=546;Type=tandem-duplication;Left=chr20:47375472-47375581;Right=chr20:47375547-47375663
chr20	CG	SV	51764718	51769998	27	.	.	ID=545;Type=tandem-duplication;Left=chr20:51764718-51765079-;Right=chr20:51769622-51769998-;Distance=4919;DiscordantMatePairAlignments=27;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSp:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr20	CG	SV	51764718	51765079	27	-	.	ID=545;Type=tandem-duplication;Left=chr20:51764718-51765079;Right=chr20:51769622-51769998
chr20	CG	SV	51769622	51769998	27	-	.	ID=545;Type=tandem-duplication;Left=chr20:51764718-51765079;Right=chr20:51769622-51769998
chr20	CG	SV	53868023	53874593	112	.	.	ID=1383;Type=deletion;Left=chr20:53868023-53868543+;Right=chr20:53874029-53874593+;Distance=6006;DiscordantMatePairAlignments=112;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67942761 (chr20:53868017-53874023);Frequency=0.94
chr20	CG	SV	53868023	53868543	112	+	.	ID=1383;Type=deletion;Left=chr20:53868023-53868543;Right=chr20:53874029-53874593
chr20	CG	SV	53874029	53874593	112	+	.	ID=1383;Type=deletion;Left=chr20:53868023-53868543;Right=chr20:53874029-53874593
chr20	CG	SV	54450471	54452583	65	.	.	ID=1381;Type=deletion;Left=chr20:54450471-54450905+;Right=chr20:54452024-54452583+;Distance=1553;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=LTR65:LTR:ERV1;LeftGenes=NM_001164114;NM_001164115;NM_001164116;NM_020356;RightGenes=NM_001164114;NM_001164115;NM_001164116;NM_020356;XRef=;Frequency=0.00
chr20	CG	SV	54450471	54450905	65	+	.	ID=1381;Type=deletion;Left=chr20:54450471-54450905;Right=chr20:54452024-54452583
chr20	CG	SV	54452024	54452583	65	+	.	ID=1381;Type=deletion;Left=chr20:54450471-54450905;Right=chr20:54452024-54452583
chr20	CG	SV	56594064	56595546	100	.	.	ID=1380;Type=deletion;Left=chr20:56594064-56594568+;Right=chr20:56595021-56595546+;Distance=957;DiscordantMatePairAlignments=100;LeftRepeat=;RightRepeat=LTR16C:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr20	CG	SV	56594064	56594568	100	+	.	ID=1380;Type=deletion;Left=chr20:56594064-56594568;Right=chr20:56595021-56595546
chr20	CG	SV	56595021	56595546	100	+	.	ID=1380;Type=deletion;Left=chr20:56594064-56594568;Right=chr20:56595021-56595546
chr20	CG	SV	57156849	57157734	13	.	.	ID=1379;Type=deletion;Left=chr20:57156849-57157314+;Right=chr20:57157184-57157734+;Distance=335;DiscordantMatePairAlignments=13;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35933436 (chr20:57156839-57157173);Frequency=0.12
chr20	CG	SV	57156849	57157314	13	+	.	ID=1379;Type=deletion;Left=chr20:57156849-57157314;Right=chr20:57157184-57157734
chr20	CG	SV	57157184	57157734	13	+	.	ID=1379;Type=deletion;Left=chr20:57156849-57157314;Right=chr20:57157184-57157734
chr20	CG	SV	59337572	59337910	107	.	.	ID=544;Type=tandem-duplication;Left=chr20:59337572-59337734-;Right=chr20:59337738-59337910-;Distance=176;DiscordantMatePairAlignments=107;LeftRepeat=;RightRepeat=;LeftGenes=NM_001794;RightGenes=NM_001794;XRef=;Frequency=0.88
chr20	CG	SV	59337572	59337734	107	-	.	ID=544;Type=tandem-duplication;Left=chr20:59337572-59337734;Right=chr20:59337738-59337910
chr20	CG	SV	59337738	59337910	107	-	.	ID=544;Type=tandem-duplication;Left=chr20:59337572-59337734;Right=chr20:59337738-59337910
chr20	CG	SV	59407575	59408457	12	.	.	ID=1377;Type=deletion;Left=chr20:59407575-59408123+;Right=chr20:59407896-59408457+;Distance=321;DiscordantMatePairAlignments=12;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001794;RightGenes=NM_001794;XRef=rs66605952 (chr20:59407575-59407896);Frequency=0.82
chr20	CG	SV	59407575	59408123	12	+	.	ID=1377;Type=deletion;Left=chr20:59407575-59408123;Right=chr20:59407896-59408457
chr20	CG	SV	59407896	59408457	12	+	.	ID=1377;Type=deletion;Left=chr20:59407575-59408123;Right=chr20:59407896-59408457
chr21	CG	SV	20932348	20932974	15	.	.	ID=37;Type=probable-inversion;Left=chr21:20932348-20932435-;Right=chr21:20932543-20932974+;Distance=108;DiscordantMatePairAlignments=15;LeftRepeat=L1M4:LINE:L1;RightRepeat=L1M4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr21	CG	SV	20932348	20932435	15	-	.	ID=37;Type=probable-inversion;Left=chr21:20932348-20932435;Right=chr21:20932543-20932974
chr21	CG	SV	20932543	20932974	15	-	.	ID=37;Type=probable-inversion;Left=chr21:20932348-20932435;Right=chr21:20932543-20932974
chr21	CG	SV	23296667	23297732	50	.	.	ID=1359;Type=deletion;Left=chr21:23296667-23297190+;Right=chr21:23297283-23297732+;Distance=616;DiscordantMatePairAlignments=50;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71775386 (chr21:23296667-23297282);Frequency=0.76
chr21	CG	SV	23296667	23297190	50	+	.	ID=1359;Type=deletion;Left=chr21:23296667-23297190;Right=chr21:23297283-23297732
chr21	CG	SV	23297283	23297732	50	+	.	ID=1359;Type=deletion;Left=chr21:23296667-23297190;Right=chr21:23297283-23297732
chr21	CG	SV	26295571	26297036	153	.	.	ID=36;Type=inversion;Left=chr21:26295571-26296025-;Right=chr21:26296575-26297036+;Distance=550;DiscordantMatePairAlignments=153;LeftRepeat=;RightRepeat=;LeftGenes=NM_000484;NM_001136129;NM_001136130;NM_201413;NM_201414;RightGenes=NM_000484;NM_001136129;NM_001136130;NM_201413;NM_201414;XRef=;Frequency=1.00
chr21	CG	SV	26295571	26296025	153	-	.	ID=36;Type=inversion;Left=chr21:26295571-26296025;Right=chr21:26296575-26297036
chr21	CG	SV	26296575	26297036	153	-	.	ID=36;Type=inversion;Left=chr21:26295571-26296025;Right=chr21:26296575-26297036
chr21	CG	SV	26296029	26296570	74	.	.	ID=3411;Type=inversion;Left=chr21:26296029-26296597+;Right=chr21:26296120-26296570-;Distance=541;DiscordantMatePairAlignments=74;LeftRepeat=;RightRepeat=;LeftGenes=NM_000484;NM_001136129;NM_001136130;NM_201413;NM_201414;RightGenes=NM_000484;NM_001136129;NM_001136130;NM_201413;NM_201414;XRef=;Frequency=1.00
chr21	CG	SV	26296029	26296597	74	+	.	ID=3411;Type=inversion;Left=chr21:26296029-26296597;Right=chr21:26296120-26296570
chr21	CG	SV	26296120	26296570	74	+	.	ID=3411;Type=inversion;Left=chr21:26296029-26296597;Right=chr21:26296120-26296570
chr21	CG	SV	26942164	26944089	80	.	.	ID=35;Type=complex;Left=chr21:26942164-26942554-;Right=chr21:26943596-26944089+;Distance=1042;DiscordantMatePairAlignments=80;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	26942164	26942554	80	-	.	ID=35;Type=complex;Left=chr21:26942164-26942554;Right=chr21:26943596-26944089
chr21	CG	SV	26943596	26944089	80	-	.	ID=35;Type=complex;Left=chr21:26942164-26942554;Right=chr21:26943596-26944089
chr21	CG	SV	26942558	26943498	36	.	.	ID=3410;Type=complex;Left=chr21:26942558-26943003+;Right=chr21:26943162-26943498-;Distance=940;DiscordantMatePairAlignments=36;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	26942558	26943003	36	+	.	ID=3410;Type=complex;Left=chr21:26942558-26943003;Right=chr21:26943162-26943498
chr21	CG	SV	26943162	26943498	36	+	.	ID=3410;Type=complex;Left=chr21:26942558-26943003;Right=chr21:26943162-26943498
chr21	CG	SV	27398532	27399754	73	.	.	ID=1356;Type=deletion;Left=chr21:27398532-27398982+;Right=chr21:27399309-27399754+;Distance=777;DiscordantMatePairAlignments=73;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr21	CG	SV	27398532	27398982	73	+	.	ID=1356;Type=deletion;Left=chr21:27398532-27398982;Right=chr21:27399309-27399754
chr21	CG	SV	27399309	27399754	73	+	.	ID=1356;Type=deletion;Left=chr21:27398532-27398982;Right=chr21:27399309-27399754
chr21	CG	SV	37073143	37080216	108	.	.	ID=1352;Type=deletion;Left=chr21:37073143-37073549+;Right=chr21:37079651-37080216+;Distance=6508;DiscordantMatePairAlignments=108;LeftRepeat=L1MC4a:LINE:L1;RightRepeat=;LeftGenes=NM_000411;RightGenes=NM_000411;XRef=;Frequency=0.00
chr21	CG	SV	37073143	37073549	108	+	.	ID=1352;Type=deletion;Left=chr21:37073143-37073549;Right=chr21:37079651-37080216
chr21	CG	SV	37079651	37080216	108	+	.	ID=1352;Type=deletion;Left=chr21:37073143-37073549;Right=chr21:37079651-37080216
chr21	CG	SV	44443627	44445458	32	.	.	ID=1342;Type=deletion;Left=chr21:44443627-44444240+;Right=chr21:44445149-44445458+;Distance=1522;DiscordantMatePairAlignments=32;LeftRepeat=AluSq:SINE:Alu;RightRepeat=MER65B-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr21	CG	SV	44443627	44444240	32	+	.	ID=1342;Type=deletion;Left=chr21:44443627-44444240;Right=chr21:44445149-44445458
chr21	CG	SV	44445149	44445458	32	+	.	ID=1342;Type=deletion;Left=chr21:44443627-44444240;Right=chr21:44445149-44445458
chr21	CG	SV	45272515	45273304	49	.	.	ID=1338;Type=deletion;Left=chr21:45272515-45273267+;Right=chr21:45273159-45273304+;Distance=644;DiscordantMatePairAlignments=49;LeftRepeat=Self chain;Tandem period 36;RightRepeat=Self chain;Tandem period 36;LeftGenes=;RightGenes=;XRef=rs72474710 (chr21:45272396-45273040);Frequency=0.41
chr21	CG	SV	45272515	45273267	49	+	.	ID=1338;Type=deletion;Left=chr21:45272515-45273267;Right=chr21:45273159-45273304
chr21	CG	SV	45273159	45273304	49	+	.	ID=1338;Type=deletion;Left=chr21:45272515-45273267;Right=chr21:45273159-45273304
chr21	CG	SV	46087329	46087501	25	.	.	ID=540;Type=tandem-duplication;Left=chr21:46087329-46087419-;Right=chr21:46087395-46087501-;Distance=82;DiscordantMatePairAlignments=25;LeftRepeat=L1MDa:LINE:L1;Self chain;RightRepeat=L1MDa:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr21	CG	SV	46087329	46087419	25	-	.	ID=540;Type=tandem-duplication;Left=chr21:46087329-46087419;Right=chr21:46087395-46087501
chr21	CG	SV	46087395	46087501	25	-	.	ID=540;Type=tandem-duplication;Left=chr21:46087329-46087419;Right=chr21:46087395-46087501
chr22	CG	SV	16437868	16440910	15	.	.	ID=1336;Type=deletion;Left=chr22:16437868-16438224+;Right=chr22:16440575-16440910+;Distance=2707;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_031481;RightGenes=NM_031481;XRef=rs71187331 (chr22:16437770-16440477);Frequency=0.94
chr22	CG	SV	16437868	16438224	15	+	.	ID=1336;Type=deletion;Left=chr22:16437868-16438224;Right=chr22:16440575-16440910
chr22	CG	SV	16440575	16440910	15	+	.	ID=1336;Type=deletion;Left=chr22:16437868-16438224;Right=chr22:16440575-16440910
chr22	CG	SV	16999015	17006066	20	.	.	ID=539;Type=tandem-duplication;Left=chr22:16999015-16999377-;Right=chr22:17005738-17006066-;Distance=6689;DiscordantMatePairAlignments=20;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem AAAAAC;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr22	CG	SV	16999015	16999377	20	-	.	ID=539;Type=tandem-duplication;Left=chr22:16999015-16999377;Right=chr22:17005738-17006066
chr22	CG	SV	17005738	17006066	20	-	.	ID=539;Type=tandem-duplication;Left=chr22:16999015-16999377;Right=chr22:17005738-17006066
chr22	CG	SV	17951619	17953270	14	.	.	ID=1333;Type=deletion;Left=chr22:17951619-17952100+;Right=chr22:17953102-17953270+;Distance=1483;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L1MA4A:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr22	CG	SV	17951619	17952100	14	+	.	ID=1333;Type=deletion;Left=chr22:17951619-17952100;Right=chr22:17953102-17953270
chr22	CG	SV	17953102	17953270	14	+	.	ID=1333;Type=deletion;Left=chr22:17951619-17952100;Right=chr22:17953102-17953270
chr22	CG	SV	21032786	21082442	12	.	.	ID=537;Type=tandem-duplication;Left=chr22:21032786-21033106-;Right=chr22:21082149-21082442-;Distance=49336;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr22	CG	SV	21032786	21033106	12	-	.	ID=537;Type=tandem-duplication;Left=chr22:21032786-21033106;Right=chr22:21082149-21082442
chr22	CG	SV	21082149	21082442	12	-	.	ID=537;Type=tandem-duplication;Left=chr22:21032786-21033106;Right=chr22:21082149-21082442
chr22	CG	SV	21236059	21239904	63	.	.	ID=1332;Type=deletion;Left=chr22:21236059-21236446+;Right=chr22:21239454-21239904+;Distance=3395;DiscordantMatePairAlignments=63;LeftRepeat=Self chain;RightRepeat=MLT1A0:LTR:MaLR;Self chain;LeftGenes=NR_027426;RightGenes=;XRef=;Frequency=0.00
chr22	CG	SV	21236059	21236446	63	+	.	ID=1332;Type=deletion;Left=chr22:21236059-21236446;Right=chr22:21239454-21239904
chr22	CG	SV	21239454	21239904	63	+	.	ID=1332;Type=deletion;Left=chr22:21236059-21236446;Right=chr22:21239454-21239904
chr22	CG	SV	21252732	21259162	23	.	.	ID=1331;Type=deletion;Left=chr22:21252732-21253065+;Right=chr22:21258712-21259162+;Distance=5980;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;RightRepeat=L1MA9:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr22	CG	SV	21252732	21253065	23	+	.	ID=1331;Type=deletion;Left=chr22:21252732-21253065;Right=chr22:21258712-21259162
chr22	CG	SV	21258712	21259162	23	+	.	ID=1331;Type=deletion;Left=chr22:21252732-21253065;Right=chr22:21258712-21259162
chr22	CG	SV	22525948	22528945	20	.	.	ID=1330;Type=deletion;Left=chr22:22525948-22526452+;Right=chr22:22528520-22528945+;Distance=2572;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67891020 (chr22:22525949-22528520);Frequency=1.00
chr22	CG	SV	22525948	22526452	20	+	.	ID=1330;Type=deletion;Left=chr22:22525948-22526452;Right=chr22:22528520-22528945
chr22	CG	SV	22528520	22528945	20	+	.	ID=1330;Type=deletion;Left=chr22:22525948-22526452;Right=chr22:22528520-22528945
chr22	CG	SV	22604144	22641743	54	.	.	ID=1329;Type=deletion;Left=chr22:22604144-22604465+;Right=chr22:22641299-22641743+;Distance=37155;DiscordantMatePairAlignments=54;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=NM_001084393;XRef=;Frequency=1.00
chr22	CG	SV	22604144	22604465	54	+	.	ID=1329;Type=deletion;Left=chr22:22604144-22604465;Right=chr22:22641299-22641743
chr22	CG	SV	22641299	22641743	54	+	.	ID=1329;Type=deletion;Left=chr22:22604144-22604465;Right=chr22:22641299-22641743
chr22	CG	SV	25498076	25500448	108	.	.	ID=1328;Type=deletion;Left=chr22:25498076-25498725+;Right=chr22:25499802-25500448+;Distance=1726;DiscordantMatePairAlignments=108;LeftRepeat=(TTTTA)n:Simple_repeat:Simple_repeat;Self chain;Tandem TTTTA;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67812002 (chr22:25498076-25499802);Frequency=1.00
chr22	CG	SV	25498076	25498725	108	+	.	ID=1328;Type=deletion;Left=chr22:25498076-25498725;Right=chr22:25499802-25500448
chr22	CG	SV	25499802	25500448	108	+	.	ID=1328;Type=deletion;Left=chr22:25498076-25498725;Right=chr22:25499802-25500448
chr22	CG	SV	29375468	29376739	20	.	.	ID=1326;Type=deletion;Left=chr22:29375468-29375852+;Right=chr22:29376235-29376739+;Distance=767;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr22	CG	SV	29375468	29375852	20	+	.	ID=1326;Type=deletion;Left=chr22:29375468-29375852;Right=chr22:29376235-29376739
chr22	CG	SV	29376235	29376739	20	+	.	ID=1326;Type=deletion;Left=chr22:29375468-29375852;Right=chr22:29376235-29376739
chr22	CG	SV	34901812	34905722	87	.	.	ID=1323;Type=deletion;Left=chr22:34901812-34902347+;Right=chr22:34905206-34905722+;Distance=3394;DiscordantMatePairAlignments=87;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr22	CG	SV	34901812	34902347	87	+	.	ID=1323;Type=deletion;Left=chr22:34901812-34902347;Right=chr22:34905206-34905722
chr22	CG	SV	34905206	34905722	87	+	.	ID=1323;Type=deletion;Left=chr22:34901812-34902347;Right=chr22:34905206-34905722
chr22	CG	SV	34942947	34944640	12	.	.	ID=1322;Type=deletion;Left=chr22:34942947-34943178+;Right=chr22:34944266-34944640+;Distance=1319;DiscordantMatePairAlignments=12;LeftRepeat=MER4C-int:LTR:ERV1;Self chain;RightRepeat=L1PA11:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr22	CG	SV	34942947	34943178	12	+	.	ID=1322;Type=deletion;Left=chr22:34942947-34943178;Right=chr22:34944266-34944640
chr22	CG	SV	34944266	34944640	12	+	.	ID=1322;Type=deletion;Left=chr22:34942947-34943178;Right=chr22:34944266-34944640
chr22	CG	SV	35273182	35280220	23	.	.	ID=1321;Type=deletion;Left=chr22:35273182-35273474+;Right=chr22:35279707-35280220+;Distance=6525;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=AluSp:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr22	CG	SV	35273182	35273474	23	+	.	ID=1321;Type=deletion;Left=chr22:35273182-35273474;Right=chr22:35279707-35280220
chr22	CG	SV	35279707	35280220	23	+	.	ID=1321;Type=deletion;Left=chr22:35273182-35273474;Right=chr22:35279707-35280220
chr22	CG	SV	39470070	39472765	12	.	.	ID=1317;Type=deletion;Left=chr22:39470070-39470792+;Right=chr22:39472593-39472765+;Distance=2523;DiscordantMatePairAlignments=12;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=LTR23:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr22	CG	SV	39470070	39470792	12	+	.	ID=1317;Type=deletion;Left=chr22:39470070-39470792;Right=chr22:39472593-39472765
chr22	CG	SV	39472593	39472765	12	+	.	ID=1317;Type=deletion;Left=chr22:39470070-39470792;Right=chr22:39472593-39472765
chr22	CG	SV	42896279	42897912	93	.	.	ID=1315;Type=deletion;Left=chr22:42896279-42896532+;Right=chr22:42897361-42897912+;Distance=1082;DiscordantMatePairAlignments=93;LeftRepeat=;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_001003828;NM_013327;RightGenes=;XRef=;Frequency=0.00
chr22	CG	SV	42896279	42896532	93	+	.	ID=1315;Type=deletion;Left=chr22:42896279-42896532;Right=chr22:42897361-42897912
chr22	CG	SV	42897361	42897912	93	+	.	ID=1315;Type=deletion;Left=chr22:42896279-42896532;Right=chr22:42897361-42897912
chr22	CG	SV	43309618	43310832	15	.	.	ID=1314;Type=deletion;Left=chr22:43309618-43309955+;Right=chr22:43310563-43310832+;Distance=945;DiscordantMatePairAlignments=15;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr22	CG	SV	43309618	43309955	15	+	.	ID=1314;Type=deletion;Left=chr22:43309618-43309955;Right=chr22:43310563-43310832
chr22	CG	SV	43310563	43310832	15	+	.	ID=1314;Type=deletion;Left=chr22:43309618-43309955;Right=chr22:43310563-43310832
chr22	CG	SV	43631102	43632087	21	.	.	ID=1312;Type=deletion;Left=chr22:43631102-43631542+;Right=chr22:43631768-43632087+;Distance=666;DiscordantMatePairAlignments=21;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSp:SINE:Alu;LeftGenes=NM_001017526;NM_181334;NM_181335;RightGenes=NM_001017526;NM_181334;NM_181335;XRef=rs72110256 (chr22:43631077-43631743);Frequency=0.29
chr22	CG	SV	43631102	43631542	21	+	.	ID=1312;Type=deletion;Left=chr22:43631102-43631542;Right=chr22:43631768-43632087
chr22	CG	SV	43631768	43632087	21	+	.	ID=1312;Type=deletion;Left=chr22:43631102-43631542;Right=chr22:43631768-43632087
chr22	CG	SV	43933384	43936172	77	.	.	ID=1311;Type=deletion;Left=chr22:43933384-43933859+;Right=chr22:43935789-43936172+;Distance=2405;DiscordantMatePairAlignments=77;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr22	CG	SV	43933384	43933859	77	+	.	ID=1311;Type=deletion;Left=chr22:43933384-43933859;Right=chr22:43935789-43936172
chr22	CG	SV	43935789	43936172	77	+	.	ID=1311;Type=deletion;Left=chr22:43933384-43933859;Right=chr22:43935789-43936172
chr22	CG	SV	46075133	46076005	17	.	.	ID=1310;Type=deletion;Left=chr22:46075133-46075640+;Right=chr22:46075529-46076005+;Distance=396;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67878846 (chr22:46075127-46075523);Frequency=0.53
chr22	CG	SV	46075133	46075640	17	+	.	ID=1310;Type=deletion;Left=chr22:46075133-46075640;Right=chr22:46075529-46076005
chr22	CG	SV	46075529	46076005	17	+	.	ID=1310;Type=deletion;Left=chr22:46075133-46075640;Right=chr22:46075529-46076005
chr22	CG	SV	47250933	47255336	60	.	.	ID=3408;Type=distal-duplication;Left=chr22:47250933-47251445+;Right=chr22:47255162-47255336-;Distance=4403;DiscordantMatePairAlignments=60;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=L1ME1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr22	CG	SV	47250933	47251445	60	+	.	ID=3408;Type=distal-duplication;Left=chr22:47250933-47251445;Right=chr22:47255162-47255336
chr22	CG	SV	47255162	47255336	60	+	.	ID=3408;Type=distal-duplication;Left=chr22:47250933-47251445;Right=chr22:47255162-47255336
chr22	CG	SV	47250465	47255339	25	.	.	ID=26;Type=distal-duplication;Left=chr22:47250465-47250955-;Right=chr22:47255169-47255339+;Distance=4214;DiscordantMatePairAlignments=25;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=L1ME1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr22	CG	SV	47250465	47250955	25	-	.	ID=26;Type=distal-duplication;Left=chr22:47250465-47250955;Right=chr22:47255169-47255339
chr22	CG	SV	47255169	47255339	25	-	.	ID=26;Type=distal-duplication;Left=chr22:47250465-47250955;Right=chr22:47255169-47255339
chr22	CG	SV	47420681	47421428	18	.	.	ID=1307;Type=deletion;Left=chr22:47420681-47421265+;Right=chr22:47421263-47421428+;Distance=582;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;Tandem period 162;Tandem period 39;RightRepeat=Self chain;Tandem period 128;Tandem period 39;LeftGenes=NM_001082967;NM_015381;RightGenes=NM_001082967;NM_015381;XRef=;Frequency=0.00
chr22	CG	SV	47420681	47421265	18	+	.	ID=1307;Type=deletion;Left=chr22:47420681-47421265;Right=chr22:47421263-47421428
chr22	CG	SV	47421263	47421428	18	+	.	ID=1307;Type=deletion;Left=chr22:47420681-47421265;Right=chr22:47421263-47421428
chr22	CG	SV	47450205	47451304	24	.	.	ID=1306;Type=deletion;Left=chr22:47450205-47450631+;Right=chr22:47451025-47451304+;Distance=820;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;Tandem period 41;RightRepeat=Self chain;Tandem period 41;LeftGenes=NM_001082967;NM_015381;RightGenes=NM_001082967;NM_015381;XRef=rs71194978 (chr22:47450008-47450787);Frequency=0.35
chr22	CG	SV	47450205	47450631	24	+	.	ID=1306;Type=deletion;Left=chr22:47450205-47450631;Right=chr22:47451025-47451304
chr22	CG	SV	47451025	47451304	24	+	.	ID=1306;Type=deletion;Left=chr22:47450205-47450631;Right=chr22:47451025-47451304
chr22	CG	SV	48008010	48010376	11	.	.	ID=536;Type=tandem-duplication;Left=chr22:48008010-48008515-;Right=chr22:48010296-48010376-;Distance=1861;DiscordantMatePairAlignments=11;LeftRepeat=L1MB7:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr22	CG	SV	48008010	48008515	11	-	.	ID=536;Type=tandem-duplication;Left=chr22:48008010-48008515;Right=chr22:48010296-48010376
chr22	CG	SV	48010296	48010376	11	-	.	ID=536;Type=tandem-duplication;Left=chr22:48008010-48008515;Right=chr22:48010296-48010376
chrX	CG	SV	1444	2253	17	.	.	ID=1302;Type=deletion;Left=chrX:1444-1951+;Right=chrX:1912-2253+;Distance=468;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=LTR6B:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	1444	1951	17	+	.	ID=1302;Type=deletion;Left=chrX:1444-1951;Right=chrX:1912-2253
chrX	CG	SV	1912	2253	17	+	.	ID=1302;Type=deletion;Left=chrX:1444-1951;Right=chrX:1912-2253
chrX	CG	SV	319350	320216	16	.	.	ID=1300;Type=deletion;Left=chrX:319350-319867+;Right=chrX:319967-320216+;Distance=617;DiscordantMatePairAlignments=16;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chrX	CG	SV	319350	319867	16	+	.	ID=1300;Type=deletion;Left=chrX:319350-319867;Right=chrX:319967-320216
chrX	CG	SV	319967	320216	16	+	.	ID=1300;Type=deletion;Left=chrX:319350-319867;Right=chrX:319967-320216
chrX	CG	SV	404814	405587	32	.	.	ID=1299;Type=deletion;Left=chrX:404814-405153+;Right=chrX:405317-405587+;Distance=503;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	404814	405153	32	+	.	ID=1299;Type=deletion;Left=chrX:404814-405153;Right=chrX:405317-405587
chrX	CG	SV	405317	405587	32	+	.	ID=1299;Type=deletion;Left=chrX:404814-405153;Right=chrX:405317-405587
chrX	CG	SV	830132	831338	16	.	.	ID=1297;Type=deletion;Left=chrX:830132-830399+;Right=chrX:830850-831338+;Distance=718;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;RightRepeat=FRAM:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs67277325 (chrX:830132-830847);Frequency=0.82
chrX	CG	SV	830132	830399	16	+	.	ID=1297;Type=deletion;Left=chrX:830132-830399;Right=chrX:830850-831338
chrX	CG	SV	830850	831338	16	+	.	ID=1297;Type=deletion;Left=chrX:830132-830399;Right=chrX:830850-831338
chrX	CG	SV	1682586	1683186	11	.	.	ID=1296;Type=deletion;Left=chrX:1682586-1683049+;Right=chrX:1682964-1683186+;Distance=378;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=NM_004043;RightGenes=NM_004043;XRef=;Frequency=0.47
chrX	CG	SV	1682586	1683049	11	+	.	ID=1296;Type=deletion;Left=chrX:1682586-1683049;Right=chrX:1682964-1683186
chrX	CG	SV	1682964	1683186	11	+	.	ID=1296;Type=deletion;Left=chrX:1682586-1683049;Right=chrX:1682964-1683186
chrX	CG	SV	5065347	5068001	98	.	.	ID=1294;Type=deletion;Left=chrX:5065347-5065814+;Right=chrX:5067503-5068001+;Distance=2156;DiscordantMatePairAlignments=98;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67919263 (chrX:5065343-5067499);Frequency=0.94
chrX	CG	SV	5065347	5065814	98	+	.	ID=1294;Type=deletion;Left=chrX:5065347-5065814;Right=chrX:5067503-5068001
chrX	CG	SV	5067503	5068001	98	+	.	ID=1294;Type=deletion;Left=chrX:5065347-5065814;Right=chrX:5067503-5068001
chrX	CG	SV	6147049	6148384	123	.	.	ID=3407;Type=probable-inversion;Left=chrX:6147049-6147467+;Right=chrX:6147939-6148384-;Distance=1335;DiscordantMatePairAlignments=123;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_020742;NM_181332;RightGenes=NM_020742;NM_181332;XRef=;Frequency=0.59
chrX	CG	SV	6147049	6147467	123	+	.	ID=3407;Type=probable-inversion;Left=chrX:6147049-6147467;Right=chrX:6147939-6148384
chrX	CG	SV	6147939	6148384	123	+	.	ID=3407;Type=probable-inversion;Left=chrX:6147049-6147467;Right=chrX:6147939-6148384
chrX	CG	SV	11635282	11641715	63	.	.	ID=1292;Type=deletion;Left=chrX:11635282-11635729+;Right=chrX:11641329-11641715+;Distance=6047;DiscordantMatePairAlignments=63;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72385759 (chrX:11635287-11641334);Frequency=0.59
chrX	CG	SV	11635282	11635729	63	+	.	ID=1292;Type=deletion;Left=chrX:11635282-11635729;Right=chrX:11641329-11641715
chrX	CG	SV	11641329	11641715	63	+	.	ID=1292;Type=deletion;Left=chrX:11635282-11635729;Right=chrX:11641329-11641715
chrX	CG	SV	11863120	11869865	87	.	.	ID=1291;Type=deletion;Left=chrX:11863120-11863656+;Right=chrX:11869370-11869865+;Distance=6250;DiscordantMatePairAlignments=87;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67857742 (chrX:11863120-11869370);Frequency=0.47
chrX	CG	SV	11863120	11863656	87	+	.	ID=1291;Type=deletion;Left=chrX:11863120-11863656;Right=chrX:11869370-11869865
chrX	CG	SV	11869370	11869865	87	+	.	ID=1291;Type=deletion;Left=chrX:11863120-11863656;Right=chrX:11869370-11869865
chrX	CG	SV	14707686	14709726	15	.	.	ID=1290;Type=deletion;Left=chrX:14707686-14708194+;Right=chrX:14709331-14709726+;Distance=1645;DiscordantMatePairAlignments=15;LeftRepeat=MLT1A1:LTR:MaLR;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	14707686	14708194	15	+	.	ID=1290;Type=deletion;Left=chrX:14707686-14708194;Right=chrX:14709331-14709726
chrX	CG	SV	14709331	14709726	15	+	.	ID=1290;Type=deletion;Left=chrX:14707686-14708194;Right=chrX:14709331-14709726
chrX	CG	SV	16337609	16338506	37	.	.	ID=1289;Type=deletion;Left=chrX:16337609-16338097+;Right=chrX:16338144-16338506+;Distance=535;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	16337609	16338097	37	+	.	ID=1289;Type=deletion;Left=chrX:16337609-16338097;Right=chrX:16338144-16338506
chrX	CG	SV	16338144	16338506	37	+	.	ID=1289;Type=deletion;Left=chrX:16337609-16338097;Right=chrX:16338144-16338506
chrX	CG	SV	30892087	30896342	41	.	.	ID=14;Type=distal-duplication;Left=chrX:30892087-30892401-;Right=chrX:30895881-30896342+;Distance=3480;DiscordantMatePairAlignments=41;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	30892087	30892401	41	-	.	ID=14;Type=distal-duplication;Left=chrX:30892087-30892401;Right=chrX:30895881-30896342
chrX	CG	SV	30895881	30896342	41	-	.	ID=14;Type=distal-duplication;Left=chrX:30892087-30892401;Right=chrX:30895881-30896342
chrX	CG	SV	30892597	30895869	42	.	.	ID=3406;Type=distal-duplication;Left=chrX:30892597-30892795+;Right=chrX:30895337-30895869-;Distance=3272;DiscordantMatePairAlignments=42;LeftRepeat=ERVL-E:LTR:ERVL;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	30892597	30892795	42	+	.	ID=3406;Type=distal-duplication;Left=chrX:30892597-30892795;Right=chrX:30895337-30895869
chrX	CG	SV	30895337	30895869	42	+	.	ID=3406;Type=distal-duplication;Left=chrX:30892597-30892795;Right=chrX:30895337-30895869
chrX	CG	SV	32897243	32899563	11	.	.	ID=1277;Type=deletion;Left=chrX:32897243-32897398+;Right=chrX:32899000-32899563+;Distance=1757;DiscordantMatePairAlignments=11;LeftRepeat=MLT1A0:LTR:MaLR;Self chain;RightRepeat=Self chain;LeftGenes=NM_000109;NM_004006;NM_004007;NM_004009;NM_004010;RightGenes=NM_000109;NM_004006;NM_004007;NM_004009;NM_004010;XRef=;Frequency=0.59
chrX	CG	SV	32897243	32897398	11	+	.	ID=1277;Type=deletion;Left=chrX:32897243-32897398;Right=chrX:32899000-32899563
chrX	CG	SV	32899000	32899563	11	+	.	ID=1277;Type=deletion;Left=chrX:32897243-32897398;Right=chrX:32899000-32899563
chrX	CG	SV	40346235	40347120	68	.	.	ID=1274;Type=deletion;Left=chrX:40346235-40346683+;Right=chrX:40346740-40347120+;Distance=505;DiscordantMatePairAlignments=68;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_005765;RightGenes=NM_005765;XRef=;Frequency=0.06
chrX	CG	SV	40346235	40346683	68	+	.	ID=1274;Type=deletion;Left=chrX:40346235-40346683;Right=chrX:40346740-40347120
chrX	CG	SV	40346740	40347120	68	+	.	ID=1274;Type=deletion;Left=chrX:40346235-40346683;Right=chrX:40346740-40347120
chrX	CG	SV	42217594	42219713	75	.	.	ID=1272;Type=deletion;Left=chrX:42217594-42218135+;Right=chrX:42219294-42219713+;Distance=1700;DiscordantMatePairAlignments=75;LeftRepeat=Self chain;RightRepeat=LTR48B:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs72267597 (chrX:42217594-42219294);Frequency=0.00
chrX	CG	SV	42217594	42218135	75	+	.	ID=1272;Type=deletion;Left=chrX:42217594-42218135;Right=chrX:42219294-42219713
chrX	CG	SV	42219294	42219713	75	+	.	ID=1272;Type=deletion;Left=chrX:42217594-42218135;Right=chrX:42219294-42219713
chrX	CG	SV	46679553	46680949	46	.	.	ID=1271;Type=deletion;Left=chrX:46679553-46679955+;Right=chrX:46680638-46680949+;Distance=1085;DiscordantMatePairAlignments=46;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_001077445;NM_014735;RightGenes=NM_001077445;NM_014735;XRef=;Frequency=0.00
chrX	CG	SV	46679553	46679955	46	+	.	ID=1271;Type=deletion;Left=chrX:46679553-46679955;Right=chrX:46680638-46680949
chrX	CG	SV	46680638	46680949	46	+	.	ID=1271;Type=deletion;Left=chrX:46679553-46679955;Right=chrX:46680638-46680949
chrX	CG	SV	49617960	49620793	17	.	.	ID=1269;Type=deletion;Left=chrX:49617960-49618446+;Right=chrX:49620348-49620793+;Distance=2388;DiscordantMatePairAlignments=17;LeftRepeat=L1M5:LINE:L1;Self chain;Tandem T;RightRepeat=L1MD:LINE:L1;Self chain;LeftGenes=NM_001127898;NM_001127899;RightGenes=NM_001127898;NM_001127899;XRef=;Frequency=0.00
chrX	CG	SV	49617960	49618446	17	+	.	ID=1269;Type=deletion;Left=chrX:49617960-49618446;Right=chrX:49620348-49620793
chrX	CG	SV	49620348	49620793	17	+	.	ID=1269;Type=deletion;Left=chrX:49617960-49618446;Right=chrX:49620348-49620793
chrX	CG	SV	52903003	55695675	16	.	.	ID=527;Type=tandem-duplication;Left=chrX:52903003-52903445-;Right=chrX:55695270-55695675-;Distance=2792230;DiscordantMatePairAlignments=16;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	52903003	52903445	16	-	.	ID=527;Type=tandem-duplication;Left=chrX:52903003-52903445;Right=chrX:55695270-55695675
chrX	CG	SV	55695270	55695675	16	-	.	ID=527;Type=tandem-duplication;Left=chrX:52903003-52903445;Right=chrX:55695270-55695675
chrX	CG	SV	52904496	52907243	29	.	.	ID=1268;Type=deletion;Left=chrX:52904496-52904823+;Right=chrX:52906754-52907243+;Distance=2258;DiscordantMatePairAlignments=29;LeftRepeat=L1M5:LINE:L1;L1PA3:LINE:L1;Self chain;RightRepeat=L1PA4:LINE:L1;Self chain;Tandem period 385;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	52904496	52904823	29	+	.	ID=1268;Type=deletion;Left=chrX:52904496-52904823;Right=chrX:52906754-52907243
chrX	CG	SV	52906754	52907243	29	+	.	ID=1268;Type=deletion;Left=chrX:52904496-52904823;Right=chrX:52906754-52907243
chrX	CG	SV	55189472	55202392	114	.	.	ID=1266;Type=deletion;Left=chrX:55189472-55189891+;Right=chrX:55202291-55202392+;Distance=12819;DiscordantMatePairAlignments=114;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001166699;NM_001166700;NM_001166701;NM_001166702;NM_001166703;NM_001166704;NM_138362;NR_030722;RightGenes=NM_001166699;NM_001166700;NM_001166701;NM_001166702;NM_001166703;NM_001166704;NM_138362;NR_030722;XRef=;Frequency=1.00
chrX	CG	SV	55189472	55189891	114	+	.	ID=1266;Type=deletion;Left=chrX:55189472-55189891;Right=chrX:55202291-55202392
chrX	CG	SV	55202291	55202392	114	+	.	ID=1266;Type=deletion;Left=chrX:55189472-55189891;Right=chrX:55202291-55202392
chrX	CG	SV	67040556	67047444	41	.	.	ID=1263;Type=deletion;Left=chrX:67040556-67041043+;Right=chrX:67047025-67047444+;Distance=6469;DiscordantMatePairAlignments=41;LeftRepeat=L1PREC2:LINE:L1;Self chain;RightRepeat=L1MA4:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	67040556	67041043	41	+	.	ID=1263;Type=deletion;Left=chrX:67040556-67041043;Right=chrX:67047025-67047444
chrX	CG	SV	67047025	67047444	41	+	.	ID=1263;Type=deletion;Left=chrX:67040556-67041043;Right=chrX:67047025-67047444
chrX	CG	SV	69363392	69363395	19	.	.	ID=12;Type=probable-inversion;Left=chrX:69363392-69363848+;Right=chrX:69363320-69363395-;Distance=3;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chrX	CG	SV	69363392	69363848	19	+	.	ID=12;Type=probable-inversion;Left=chrX:69363392-69363848;Right=chrX:69363320-69363395
chrX	CG	SV	69363320	69363395	19	+	.	ID=12;Type=probable-inversion;Left=chrX:69363392-69363848;Right=chrX:69363320-69363395
chrX	CG	SV	75217644	75228643	13	.	.	ID=526;Type=tandem-duplication;Left=chrX:75217644-75217906-;Right=chrX:75228370-75228643-;Distance=10737;DiscordantMatePairAlignments=13;LeftRepeat=L1PREC2:LINE:L1;Self chain;RightRepeat=L1PA7:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	75217644	75217906	13	-	.	ID=526;Type=tandem-duplication;Left=chrX:75217644-75217906;Right=chrX:75228370-75228643
chrX	CG	SV	75228370	75228643	13	-	.	ID=526;Type=tandem-duplication;Left=chrX:75217644-75217906;Right=chrX:75228370-75228643
chrX	CG	SV	77583513	77584669	175	.	.	ID=1262;Type=deletion;Left=chrX:77583513-77584116+;Right=chrX:77584111-77584669+;Distance=598;DiscordantMatePairAlignments=175;LeftRepeat=Self chain;RightRepeat=HUERS-P1:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	77583513	77584116	175	+	.	ID=1262;Type=deletion;Left=chrX:77583513-77584116;Right=chrX:77584111-77584669
chrX	CG	SV	77584111	77584669	175	+	.	ID=1262;Type=deletion;Left=chrX:77583513-77584116;Right=chrX:77584111-77584669
chrX	CG	SV	80929159	80930043	28	.	.	ID=1261;Type=deletion;Left=chrX:80929159-80929578+;Right=chrX:80929739-80930043+;Distance=580;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;THE1B-int:LTR:MaLR;RightRepeat=Self chain;THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	80929159	80929578	28	+	.	ID=1261;Type=deletion;Left=chrX:80929159-80929578;Right=chrX:80929739-80930043
chrX	CG	SV	80929739	80930043	28	+	.	ID=1261;Type=deletion;Left=chrX:80929159-80929578;Right=chrX:80929739-80930043
chrX	CG	SV	80983309	80989848	103	.	.	ID=1260;Type=deletion;Left=chrX:80983309-80983755+;Right=chrX:80989360-80989848+;Distance=6051;DiscordantMatePairAlignments=103;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=L1MC3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	80983309	80983755	103	+	.	ID=1260;Type=deletion;Left=chrX:80983309-80983755;Right=chrX:80989360-80989848
chrX	CG	SV	80989360	80989848	103	+	.	ID=1260;Type=deletion;Left=chrX:80983309-80983755;Right=chrX:80989360-80989848
chrX	CG	SV	85491831	85496652	14	.	.	ID=1258;Type=deletion;Left=chrX:85491831-85492297+;Right=chrX:85496523-85496652+;Distance=4692;DiscordantMatePairAlignments=14;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=(CAAAA)n:Simple_repeat:Simple_repeat;Self chain;Tandem AATAA;LeftGenes=NM_001139514;NM_001139515;NM_053281;RightGenes=NM_001139514;NM_001139515;NM_053281;XRef=;Frequency=0.88
chrX	CG	SV	85491831	85492297	14	+	.	ID=1258;Type=deletion;Left=chrX:85491831-85492297;Right=chrX:85496523-85496652
chrX	CG	SV	85496523	85496652	14	+	.	ID=1258;Type=deletion;Left=chrX:85491831-85492297;Right=chrX:85496523-85496652
chrX	CG	SV	86173433	86174296	15	.	.	ID=1256;Type=deletion;Left=chrX:86173433-86173890+;Right=chrX:86173883-86174296+;Distance=450;DiscordantMatePairAlignments=15;LeftRepeat=L1PA15:LINE:L1;Self chain;RightRepeat=L1PA15:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71894066 (chrX:86173430-86173880);Frequency=0.71
chrX	CG	SV	86173433	86173890	15	+	.	ID=1256;Type=deletion;Left=chrX:86173433-86173890;Right=chrX:86173883-86174296
chrX	CG	SV	86173883	86174296	15	+	.	ID=1256;Type=deletion;Left=chrX:86173433-86173890;Right=chrX:86173883-86174296
chrX	CG	SV	89061815	89062782	11	.	.	ID=525;Type=tandem-duplication;Left=chrX:89061815-89062265-;Right=chrX:89062570-89062782-;Distance=517;DiscordantMatePairAlignments=11;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	89061815	89062265	11	-	.	ID=525;Type=tandem-duplication;Left=chrX:89061815-89062265;Right=chrX:89062570-89062782
chrX	CG	SV	89062570	89062782	11	-	.	ID=525;Type=tandem-duplication;Left=chrX:89061815-89062265;Right=chrX:89062570-89062782
chrX	CG	SV	89465022	89467486	53	.	.	ID=1254;Type=deletion;Left=chrX:89465022-89465457+;Right=chrX:89467036-89467486+;Distance=2014;DiscordantMatePairAlignments=53;LeftRepeat=MLT-int:LTR:MaLR;SegDup;Self chain;RightRepeat=L1MB3:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chrX	CG	SV	89465022	89465457	53	+	.	ID=1254;Type=deletion;Left=chrX:89465022-89465457;Right=chrX:89467036-89467486
chrX	CG	SV	89467036	89467486	53	+	.	ID=1254;Type=deletion;Left=chrX:89465022-89465457;Right=chrX:89467036-89467486
chrX	CG	SV	90170015	90171221	123	.	.	ID=1253;Type=deletion;Left=chrX:90170015-90170603+;Right=chrX:90170744-90171221+;Distance=729;DiscordantMatePairAlignments=123;LeftRepeat=LTR9B:LTR:ERV1;SegDup;Self chain;RightRepeat=L1MA9:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chrX	CG	SV	90170015	90170603	123	+	.	ID=1253;Type=deletion;Left=chrX:90170015-90170603;Right=chrX:90170744-90171221
chrX	CG	SV	90170744	90171221	123	+	.	ID=1253;Type=deletion;Left=chrX:90170015-90170603;Right=chrX:90170744-90171221
chrX	CG	SV	90726320	90727648	33	.	.	ID=1252;Type=deletion;Left=chrX:90726320-90726671+;Right=chrX:90727094-90727648+;Distance=774;DiscordantMatePairAlignments=33;LeftRepeat=L1MA4A:LINE:L1;SegDup;Self chain;RightRepeat=L1M1:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	90726320	90726671	33	+	.	ID=1252;Type=deletion;Left=chrX:90726320-90726671;Right=chrX:90727094-90727648
chrX	CG	SV	90727094	90727648	33	+	.	ID=1252;Type=deletion;Left=chrX:90726320-90726671;Right=chrX:90727094-90727648
chrX	CG	SV	91254194	91255988	23	.	.	ID=1251;Type=deletion;Left=chrX:91254194-91254527+;Right=chrX:91255454-91255988+;Distance=1260;DiscordantMatePairAlignments=23;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_001168360;NM_001168361;NM_001168362;NM_001168363;NM_032968;NM_032969;RightGenes=NM_001168360;NM_001168361;NM_001168362;NM_001168363;NM_032968;NM_032969;XRef=;Frequency=0.00
chrX	CG	SV	91254194	91254527	23	+	.	ID=1251;Type=deletion;Left=chrX:91254194-91254527;Right=chrX:91255454-91255988
chrX	CG	SV	91255454	91255988	23	+	.	ID=1251;Type=deletion;Left=chrX:91254194-91254527;Right=chrX:91255454-91255988
chrX	CG	SV	92682955	92688502	26	.	.	ID=1250;Type=deletion;Left=chrX:92682955-92683308+;Right=chrX:92688163-92688502+;Distance=5208;DiscordantMatePairAlignments=26;LeftRepeat=L2:LINE:L2;RightRepeat=MLT2B3:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs67289411 (chrX:92682955-92688163);Frequency=0.47
chrX	CG	SV	92682955	92683308	26	+	.	ID=1250;Type=deletion;Left=chrX:92682955-92683308;Right=chrX:92688163-92688502
chrX	CG	SV	92688163	92688502	26	+	.	ID=1250;Type=deletion;Left=chrX:92682955-92683308;Right=chrX:92688163-92688502
chrX	CG	SV	115052026	115067384	26	.	.	ID=1249;Type=deletion;Left=chrX:115052026-115052424+;Right=chrX:115066972-115067384+;Distance=14946;DiscordantMatePairAlignments=26;LeftRepeat=L1ME1:LINE:L1;RightRepeat=L1MA1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	115052026	115052424	26	+	.	ID=1249;Type=deletion;Left=chrX:115052026-115052424;Right=chrX:115066972-115067384
chrX	CG	SV	115066972	115067384	26	+	.	ID=1249;Type=deletion;Left=chrX:115052026-115052424;Right=chrX:115066972-115067384
chrX	CG	SV	117338172	117339464	58	.	.	ID=1248;Type=deletion;Left=chrX:117338172-117338742+;Right=chrX:117338998-117339464+;Distance=826;DiscordantMatePairAlignments=58;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs67986079 (chrX:117338172-117338998);Frequency=0.24
chrX	CG	SV	117338172	117338742	58	+	.	ID=1248;Type=deletion;Left=chrX:117338172-117338742;Right=chrX:117338998-117339464
chrX	CG	SV	117338998	117339464	58	+	.	ID=1248;Type=deletion;Left=chrX:117338172-117338742;Right=chrX:117338998-117339464
chrX	CG	SV	123943403	123944330	29	.	.	ID=1245;Type=deletion;Left=chrX:123943403-123943960+;Right=chrX:123943832-123944330+;Distance=429;DiscordantMatePairAlignments=29;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71987561 (chrX:123943388-123943817);Frequency=0.12
chrX	CG	SV	123943403	123943960	29	+	.	ID=1245;Type=deletion;Left=chrX:123943403-123943960;Right=chrX:123943832-123944330
chrX	CG	SV	123943832	123944330	29	+	.	ID=1245;Type=deletion;Left=chrX:123943403-123943960;Right=chrX:123943832-123944330
chrX	CG	SV	129495293	129497066	44	.	.	ID=1244;Type=deletion;Left=chrX:129495293-129495538+;Right=chrX:129496567-129497066+;Distance=1274;DiscordantMatePairAlignments=44;LeftRepeat=MER83:LTR:ERV1;RightRepeat=MER83-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	129495293	129495538	44	+	.	ID=1244;Type=deletion;Left=chrX:129495293-129495538;Right=chrX:129496567-129497066
chrX	CG	SV	129496567	129497066	44	+	.	ID=1244;Type=deletion;Left=chrX:129495293-129495538;Right=chrX:129496567-129497066
chrX	CG	SV	130833148	130836394	22	.	.	ID=1243;Type=deletion;Left=chrX:130833148-130833619+;Right=chrX:130836311-130836394+;Distance=3163;DiscordantMatePairAlignments=22;LeftRepeat=AluSp:SINE:Alu;Self chain;RightRepeat=MER70-int:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chrX	CG	SV	130833148	130833619	22	+	.	ID=1243;Type=deletion;Left=chrX:130833148-130833619;Right=chrX:130836311-130836394
chrX	CG	SV	130836311	130836394	22	+	.	ID=1243;Type=deletion;Left=chrX:130833148-130833619;Right=chrX:130836311-130836394
chrX	CG	SV	131221256	131221959	12	.	.	ID=3397;Type=distal-duplication;Left=chrX:131221256-131221617+;Right=chrX:131221876-131221959-;Distance=703;DiscordantMatePairAlignments=12;LeftRepeat=MLT1B:LTR:MaLR;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	131221256	131221617	12	+	.	ID=3397;Type=distal-duplication;Left=chrX:131221256-131221617;Right=chrX:131221876-131221959
chrX	CG	SV	131221876	131221959	12	+	.	ID=3397;Type=distal-duplication;Left=chrX:131221256-131221617;Right=chrX:131221876-131221959
chrX	CG	SV	131220955	131221970	16	.	.	ID=10;Type=distal-duplication;Left=chrX:131220955-131221272-;Right=chrX:131221878-131221970+;Distance=606;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chrX	CG	SV	131220955	131221272	16	-	.	ID=10;Type=distal-duplication;Left=chrX:131220955-131221272;Right=chrX:131221878-131221970
chrX	CG	SV	131221878	131221970	16	-	.	ID=10;Type=distal-duplication;Left=chrX:131220955-131221272;Right=chrX:131221878-131221970
chrX	CG	SV	133989183	133989977	10	.	.	ID=1242;Type=deletion;Left=chrX:133989183-133989614+;Right=chrX:133989734-133989977+;Distance=551;DiscordantMatePairAlignments=10;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=L1PB2:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chrX	CG	SV	133989183	133989614	10	+	.	ID=1242;Type=deletion;Left=chrX:133989183-133989614;Right=chrX:133989734-133989977
chrX	CG	SV	133989734	133989977	10	+	.	ID=1242;Type=deletion;Left=chrX:133989183-133989614;Right=chrX:133989734-133989977
chrX	CG	SV	138984775	139048572	11	.	.	ID=524;Type=tandem-duplication;Left=chrX:138984775-138985358-;Right=chrX:139048484-139048572-;Distance=63214;DiscordantMatePairAlignments=11;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	138984775	138985358	11	-	.	ID=524;Type=tandem-duplication;Left=chrX:138984775-138985358;Right=chrX:139048484-139048572
chrX	CG	SV	139048484	139048572	11	-	.	ID=524;Type=tandem-duplication;Left=chrX:138984775-138985358;Right=chrX:139048484-139048572
chrX	CG	SV	140304396	140307295	31	.	.	ID=1239;Type=deletion;Left=chrX:140304396-140304808+;Right=chrX:140306893-140307295+;Distance=2497;DiscordantMatePairAlignments=31;LeftRepeat=L1PB2:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chrX	CG	SV	140304396	140304808	31	+	.	ID=1239;Type=deletion;Left=chrX:140304396-140304808;Right=chrX:140306893-140307295
chrX	CG	SV	140306893	140307295	31	+	.	ID=1239;Type=deletion;Left=chrX:140304396-140304808;Right=chrX:140306893-140307295
chrX	CG	SV	142389617	142393613	31	.	.	ID=1238;Type=deletion;Left=chrX:142389617-142390099+;Right=chrX:142393123-142393613+;Distance=3506;DiscordantMatePairAlignments=31;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=Self chain;THE1B-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	142389617	142390099	31	+	.	ID=1238;Type=deletion;Left=chrX:142389617-142390099;Right=chrX:142393123-142393613
chrX	CG	SV	142393123	142393613	31	+	.	ID=1238;Type=deletion;Left=chrX:142389617-142390099;Right=chrX:142393123-142393613
chrX	CG	SV	143234659	143238114	44	.	.	ID=1237;Type=deletion;Left=chrX:143234659-143235160+;Right=chrX:143237658-143238114+;Distance=2999;DiscordantMatePairAlignments=44;LeftRepeat=L1HS:LINE:L1;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67921484 (chrX:143234662-143237661);Frequency=0.82
chrX	CG	SV	143234659	143235160	44	+	.	ID=1237;Type=deletion;Left=chrX:143234659-143235160;Right=chrX:143237658-143238114
chrX	CG	SV	143237658	143238114	44	+	.	ID=1237;Type=deletion;Left=chrX:143234659-143235160;Right=chrX:143237658-143238114
chrX	CG	SV	144229769	144232685	31	.	.	ID=1236;Type=deletion;Left=chrX:144229769-144230096+;Right=chrX:144232200-144232685+;Distance=2431;DiscordantMatePairAlignments=31;LeftRepeat=L1M1:LINE:L1;RightRepeat=MSTA:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	144229769	144230096	31	+	.	ID=1236;Type=deletion;Left=chrX:144229769-144230096;Right=chrX:144232200-144232685
chrX	CG	SV	144232200	144232685	31	+	.	ID=1236;Type=deletion;Left=chrX:144229769-144230096;Right=chrX:144232200-144232685
chrX	CG	SV	146651366	146657622	74	.	.	ID=1235;Type=deletion;Left=chrX:146651366-146651824+;Right=chrX:146656837-146657622+;Distance=5471;DiscordantMatePairAlignments=74;LeftRepeat=;RightRepeat=L1MD2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	146651366	146651824	74	+	.	ID=1235;Type=deletion;Left=chrX:146651366-146651824;Right=chrX:146656837-146657622
chrX	CG	SV	146656837	146657622	74	+	.	ID=1235;Type=deletion;Left=chrX:146651366-146651824;Right=chrX:146656837-146657622
chrX	CG	SV	147317388	147319224	53	.	.	ID=1234;Type=deletion;Left=chrX:147317388-147317807+;Right=chrX:147318927-147319224+;Distance=1539;DiscordantMatePairAlignments=53;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs68151473 (chrX:147317390-147318927);Frequency=0.82
chrX	CG	SV	147317388	147317807	53	+	.	ID=1234;Type=deletion;Left=chrX:147317388-147317807;Right=chrX:147318927-147319224
chrX	CG	SV	147318927	147319224	53	+	.	ID=1234;Type=deletion;Left=chrX:147317388-147317807;Right=chrX:147318927-147319224
chrX	CG	SV	154139109	154140647	117	.	.	ID=1233;Type=deletion;Left=chrX:154139109-154139534+;Right=chrX:154140141-154140647+;Distance=1032;DiscordantMatePairAlignments=117;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	154139109	154139534	117	+	.	ID=1233;Type=deletion;Left=chrX:154139109-154139534;Right=chrX:154140141-154140647
chrX	CG	SV	154140141	154140647	117	+	.	ID=1233;Type=deletion;Left=chrX:154139109-154139534;Right=chrX:154140141-154140647
chrM	CG	SV	15869	16242	15	-	.	ID=522;Type=tandem-duplication;Left=chrM:-320-104;Right=chrM:15869-16242