chr1	CG	SV	815186	5649195	11	.	.	ID=3906;Type=complex;Left=chr1:815186-815626+;Right=chr1:5648705-5649195+;Distance=4833519;DiscordantMatePairAlignments=11;LeftRepeat=MLT1I:LTR:MaLR;SegDup;Self chain;RightRepeat=MLT1I:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	815186	815626	11	+	.	ID=3906;Type=complex;Left=chr1:815186-815626;Right=chr1:5648705-5649195
chr1	CG	SV	5648705	5649195	11	+	.	ID=3906;Type=complex;Left=chr1:815186-815626;Right=chr1:5648705-5649195
chr1	CG	SV	815472	5649523	26	.	.	ID=3616;Type=complex;Left=chr1:815472-815629-;Right=chr1:5649138-5649523-;Distance=4833894;DiscordantMatePairAlignments=26;LeftRepeat=AluS:SINE:Alu;SegDup;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	815472	815629	26	-	.	ID=3616;Type=complex;Left=chr1:815472-815629;Right=chr1:5649138-5649523
chr1	CG	SV	5649138	5649523	26	-	.	ID=3616;Type=complex;Left=chr1:815472-815629;Right=chr1:5649138-5649523
chr1	CG	SV	816176	5651122	22	.	.	ID=3905;Type=complex;Left=chr1:816176-816425+;Right=chr1:5650794-5651122+;Distance=4834618;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 100;Tandem period 34;Tandem period 66;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	816176	816425	22	+	.	ID=3905;Type=complex;Left=chr1:816176-816425;Right=chr1:5650794-5651122
chr1	CG	SV	5650794	5651122	22	+	.	ID=3905;Type=complex;Left=chr1:816176-816425;Right=chr1:5650794-5651122
chr1	CG	SV	859250	860497	34	.	.	ID=3915;Type=deletion;Left=chr1:859250-859511+;Right=chr1:860202-860497+;Distance=952;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;Tandem period 28;RightRepeat=Self chain;Tandem period 28;LeftGenes=NM_152486:+;RightGenes=NM_152486:+;XRef=rs70949527 (chr1:859334-860175);Frequency=1.00
chr1	CG	SV	859250	859511	34	+	.	ID=3915;Type=deletion;Left=chr1:859250-859511;Right=chr1:860202-860497
chr1	CG	SV	860202	860497	34	+	.	ID=3915;Type=deletion;Left=chr1:859250-859511;Right=chr1:860202-860497
chr1	CG	SV	953901	954680	30	.	.	ID=3914;Type=deletion;Left=chr1:953901-954595+;Right=chr1:954388-954680+;Distance=487;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;Tandem period 61;RightRepeat=Self chain;LeftGenes=NM_198576:+;RightGenes=NM_198576:+;XRef=;Frequency=0.29
chr1	CG	SV	953901	954595	30	+	.	ID=3914;Type=deletion;Left=chr1:953901-954595;Right=chr1:954388-954680
chr1	CG	SV	954388	954680	30	+	.	ID=3914;Type=deletion;Left=chr1:953901-954595;Right=chr1:954388-954680
chr1	CG	SV	2908894	2909835	18	.	.	ID=3909;Type=deletion;Left=chr1:2908894-2909446+;Right=chr1:2909229-2909835+;Distance=335;DiscordantMatePairAlignments=18;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	2908894	2909446	18	+	.	ID=3909;Type=deletion;Left=chr1:2908894-2909446;Right=chr1:2909229-2909835
chr1	CG	SV	2909229	2909835	18	+	.	ID=3909;Type=deletion;Left=chr1:2908894-2909446;Right=chr1:2909229-2909835
chr1	CG	SV	3550125	3551091	31	.	.	ID=3908;Type=deletion;Left=chr1:3550125-3550489+;Right=chr1:3550839-3551091+;Distance=714;DiscordantMatePairAlignments=31;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;Tandem period 51;LeftGenes=NM_017818:-;RightGenes=NM_017818:-;XRef=;Frequency=0.18
chr1	CG	SV	3550125	3550489	31	+	.	ID=3908;Type=deletion;Left=chr1:3550125-3550489;Right=chr1:3550839-3551091
chr1	CG	SV	3550839	3551091	31	+	.	ID=3908;Type=deletion;Left=chr1:3550125-3550489;Right=chr1:3550839-3551091
chr1	CG	SV	5639887	5648781	17	.	.	ID=3904;Type=complex;Left=chr1:5639887-5640087+;Right=chr1:5648482-5648781+;Distance=8595;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr1	CG	SV	5639887	5640087	17	+	.	ID=3904;Type=complex;Left=chr1:5639887-5640087;Right=chr1:5648482-5648781
chr1	CG	SV	5648482	5648781	17	+	.	ID=3904;Type=complex;Left=chr1:5639887-5640087;Right=chr1:5648482-5648781
chr1	CG	SV	5650228	5651353	54	.	.	ID=3903;Type=complex;Left=chr1:5650228-5650446+;Right=chr1:5650921-5651353+;Distance=693;DiscordantMatePairAlignments=54;LeftRepeat=Self chain;Tandem period 100;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	5650228	5650446	54	+	.	ID=3903;Type=complex;Left=chr1:5650228-5650446;Right=chr1:5650921-5651353
chr1	CG	SV	5650921	5651353	54	+	.	ID=3903;Type=complex;Left=chr1:5650228-5650446;Right=chr1:5650921-5651353
chr1	CG	SV	5943284	5949153	81	.	.	ID=3901;Type=deletion;Left=chr1:5943284-5943868+;Right=chr1:5948663-5949153+;Distance=5379;DiscordantMatePairAlignments=81;LeftRepeat=Self chain;RightRepeat=MER72:LTR:ERV1;Self chain;LeftGenes=NM_015102:-;RightGenes=NM_015102:-;XRef=;Frequency=0.00
chr1	CG	SV	5943284	5943868	81	+	.	ID=3901;Type=deletion;Left=chr1:5943284-5943868;Right=chr1:5948663-5949153
chr1	CG	SV	5948663	5949153	81	+	.	ID=3901;Type=deletion;Left=chr1:5943284-5943868;Right=chr1:5948663-5949153
chr1	CG	SV	10482369	10484387	10	.	.	ID=3899;Type=deletion;Left=chr1:10482369-10482956+;Right=chr1:10484223-10484387+;Distance=1854;DiscordantMatePairAlignments=10;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_004565:+;RightGenes=NM_004565:+;XRef=;Frequency=0.00
chr1	CG	SV	10482369	10482956	10	+	.	ID=3899;Type=deletion;Left=chr1:10482369-10482956;Right=chr1:10484223-10484387
chr1	CG	SV	10484223	10484387	10	+	.	ID=3899;Type=deletion;Left=chr1:10482369-10482956;Right=chr1:10484223-10484387
chr1	CG	SV	16923889	232979336	268	.	.	ID=581;Type=probable-inversion;Left=chr1:16923889-16924326-;Right=chr1:232978810-232979336+;Distance=216054484;DiscordantMatePairAlignments=268;LeftRepeat=SegDup;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	16923889	16924326	268	-	.	ID=581;Type=probable-inversion;Left=chr1:16923889-16924326;Right=chr1:232978810-232979336
chr1	CG	SV	232978810	232979336	268	-	.	ID=581;Type=probable-inversion;Left=chr1:16923889-16924326;Right=chr1:232978810-232979336
chr1	CG	SV	27997051	27997266	20	-	.	ID=422;Type=interchromosomal;Left=chr1:27997051-27997266-;Right=chr20:58911843-58912491+;Distance=;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=NM_177424:+;RightGenes=;XRef=;Frequency=0.00
chr20	CG	SV	58911843	58912491	20	-	.	ID=422;Type=interchromosomal;Left=chr1:27997051-27997266-;Right=chr20:58911843-58912491+;Distance=;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=NM_177424:+;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	29593077	30651926	38	.	.	ID=1189;Type=probable-inversion;Left=chr1:29593077-29593426-;Right=chr1:30651405-30651926+;Distance=1057979;DiscordantMatePairAlignments=38;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	29593077	29593426	38	-	.	ID=1189;Type=probable-inversion;Left=chr1:29593077-29593426;Right=chr1:30651405-30651926
chr1	CG	SV	30651405	30651926	38	-	.	ID=1189;Type=probable-inversion;Left=chr1:29593077-29593426;Right=chr1:30651405-30651926
chr1	CG	SV	31172047	31173055	16	.	.	ID=3894;Type=deletion;Left=chr1:31172047-31172594+;Right=chr1:31172762-31173055+;Distance=715;DiscordantMatePairAlignments=16;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	31172047	31172594	16	+	.	ID=3894;Type=deletion;Left=chr1:31172047-31172594;Right=chr1:31172762-31173055
chr1	CG	SV	31172762	31173055	16	+	.	ID=3894;Type=deletion;Left=chr1:31172047-31172594;Right=chr1:31172762-31173055
chr1	CG	SV	31743942	31744391	17	.	.	ID=1187;Type=probable-inversion;Left=chr1:31743942-31744128-;Right=chr1:31744235-31744391+;Distance=107;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	31743942	31744128	17	-	.	ID=1187;Type=probable-inversion;Left=chr1:31743942-31744128;Right=chr1:31744235-31744391
chr1	CG	SV	31744235	31744391	17	-	.	ID=1187;Type=probable-inversion;Left=chr1:31743942-31744128;Right=chr1:31744235-31744391
chr1	CG	SV	32965775	32968851	69	.	.	ID=1433;Type=tandem-duplication;Left=chr1:32965775-32966449-;Right=chr1:32968203-32968851-;Distance=2402;DiscordantMatePairAlignments=69;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSp:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	32965775	32966449	69	-	.	ID=1433;Type=tandem-duplication;Left=chr1:32965775-32966449;Right=chr1:32968203-32968851
chr1	CG	SV	32968203	32968851	69	-	.	ID=1433;Type=tandem-duplication;Left=chr1:32965775-32966449;Right=chr1:32968203-32968851
chr1	CG	SV	56603706	56608180	128	.	.	ID=3891;Type=deletion;Left=chr1:56603706-56604330+;Right=chr1:56607561-56608180+;Distance=3855;DiscordantMatePairAlignments=128;LeftRepeat=;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr1	CG	SV	56603706	56604330	128	+	.	ID=3891;Type=deletion;Left=chr1:56603706-56604330;Right=chr1:56607561-56608180
chr1	CG	SV	56607561	56608180	128	+	.	ID=3891;Type=deletion;Left=chr1:56603706-56604330;Right=chr1:56607561-56608180
chr1	CG	SV	56768311	56768934	50	.	.	ID=1430;Type=tandem-duplication;Left=chr1:56768311-56768620-;Right=chr1:56768588-56768934-;Distance=314;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=;LeftGenes=NM_003713:-;NM_177414:-;RightGenes=NM_003713:-;NM_177414:-;XRef=;Frequency=0.71
chr1	CG	SV	56768311	56768620	50	-	.	ID=1430;Type=tandem-duplication;Left=chr1:56768311-56768620;Right=chr1:56768588-56768934
chr1	CG	SV	56768588	56768934	50	-	.	ID=1430;Type=tandem-duplication;Left=chr1:56768311-56768620;Right=chr1:56768588-56768934
chr1	CG	SV	58516499	58518022	156	.	.	ID=3886;Type=deletion;Left=chr1:58516499-58517060+;Right=chr1:58517412-58518022+;Distance=913;DiscordantMatePairAlignments=156;LeftRepeat=THE1D:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67857551 (chr1:58516497-58517410);Frequency=1.00
chr1	CG	SV	58516499	58517060	156	+	.	ID=3886;Type=deletion;Left=chr1:58516499-58517060;Right=chr1:58517412-58518022
chr1	CG	SV	58517412	58518022	156	+	.	ID=3886;Type=deletion;Left=chr1:58516499-58517060;Right=chr1:58517412-58518022
chr1	CG	SV	62163190	62164104	15	.	.	ID=3885;Type=deletion;Left=chr1:62163190-62163719+;Right=chr1:62163539-62164104+;Distance=349;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_176877:+;RightGenes=NM_176877:+;XRef=rs6143236 (chr1:62163174-62163523);Frequency=1.00
chr1	CG	SV	62163190	62163719	15	+	.	ID=3885;Type=deletion;Left=chr1:62163190-62163719;Right=chr1:62163539-62164104
chr1	CG	SV	62163539	62164104	15	+	.	ID=3885;Type=deletion;Left=chr1:62163190-62163719;Right=chr1:62163539-62164104
chr1	CG	SV	62924423	62925188	11	.	.	ID=3884;Type=deletion;Left=chr1:62924423-62924962+;Right=chr1:62924762-62925188+;Distance=339;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_033407:-;RightGenes=NM_033407:-;XRef=rs66945421 (chr1:62924407-62924746);Frequency=1.00
chr1	CG	SV	62924423	62924962	11	+	.	ID=3884;Type=deletion;Left=chr1:62924423-62924962;Right=chr1:62924762-62925188
chr1	CG	SV	62924762	62925188	11	+	.	ID=3884;Type=deletion;Left=chr1:62924423-62924962;Right=chr1:62924762-62925188
chr1	CG	SV	63477949	63481259	124	.	.	ID=3883;Type=deletion;Left=chr1:63477949-63478461+;Right=chr1:63480739-63481259+;Distance=2790;DiscordantMatePairAlignments=124;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68164570 (chr1:63477954-63480744);Frequency=0.65
chr1	CG	SV	63477949	63478461	124	+	.	ID=3883;Type=deletion;Left=chr1:63477949-63478461;Right=chr1:63480739-63481259
chr1	CG	SV	63480739	63481259	124	+	.	ID=3883;Type=deletion;Left=chr1:63477949-63478461;Right=chr1:63480739-63481259
chr1	CG	SV	67780696	67782026	54	.	.	ID=3882;Type=deletion;Left=chr1:67780696-67781282+;Right=chr1:67781553-67782026+;Distance=857;DiscordantMatePairAlignments=54;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	67780696	67781282	54	+	.	ID=3882;Type=deletion;Left=chr1:67780696-67781282;Right=chr1:67781553-67782026
chr1	CG	SV	67781553	67782026	54	+	.	ID=3882;Type=deletion;Left=chr1:67780696-67781282;Right=chr1:67781553-67782026
chr1	CG	SV	72528284	72537070	77	.	.	ID=3877;Type=deletion;Left=chr1:72528284-72528919+;Right=chr1:72536666-72537070+;Distance=8382;DiscordantMatePairAlignments=77;LeftRepeat=MLT2D:LTR:ERVL;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	72528284	72528919	77	+	.	ID=3877;Type=deletion;Left=chr1:72528284-72528919;Right=chr1:72536666-72537070
chr1	CG	SV	72536666	72537070	77	+	.	ID=3877;Type=deletion;Left=chr1:72528284-72528919;Right=chr1:72536666-72537070
chr1	CG	SV	72538912	72585029	96	.	.	ID=3876;Type=deletion;Left=chr1:72538912-72539472+;Right=chr1:72584428-72585029+;Distance=45516;DiscordantMatePairAlignments=96;LeftRepeat=;RightRepeat=MLT1E3:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	72538912	72539472	96	+	.	ID=3876;Type=deletion;Left=chr1:72538912-72539472;Right=chr1:72584428-72585029
chr1	CG	SV	72584428	72585029	96	+	.	ID=3876;Type=deletion;Left=chr1:72538912-72539472;Right=chr1:72584428-72585029
chr1	CG	SV	77248632	77249313	38	.	.	ID=1426;Type=tandem-duplication;Left=chr1:77248632-77248983-;Right=chr1:77248964-77249313-;Distance=330;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=;LeftGenes=NM_030965:+;RightGenes=NM_030965:+;XRef=;Frequency=0.18
chr1	CG	SV	77248632	77248983	38	-	.	ID=1426;Type=tandem-duplication;Left=chr1:77248632-77248983;Right=chr1:77248964-77249313
chr1	CG	SV	77248964	77249313	38	-	.	ID=1426;Type=tandem-duplication;Left=chr1:77248632-77248983;Right=chr1:77248964-77249313
chr1	CG	SV	80567008	80568217	27	.	.	ID=1183;Type=probable-inversion;Left=chr1:80567008-80567211-;Right=chr1:80567697-80568217+;Distance=486;DiscordantMatePairAlignments=27;LeftRepeat=L1MC:LINE:L1;RightRepeat=(TA)n:Simple_repeat:Simple_repeat;Tandem AC;Tandem TA;Tandem period 22;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	80567008	80567211	27	-	.	ID=1183;Type=probable-inversion;Left=chr1:80567008-80567211;Right=chr1:80567697-80568217
chr1	CG	SV	80567697	80568217	27	-	.	ID=1183;Type=probable-inversion;Left=chr1:80567008-80567211;Right=chr1:80567697-80568217
chr1	CG	SV	81177357	81183929	60	.	.	ID=3871;Type=deletion;Left=chr1:81177357-81177875+;Right=chr1:81183548-81183929+;Distance=6191;DiscordantMatePairAlignments=60;LeftRepeat=MSTD:LTR:MaLR;RightRepeat=MSTD:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	81177357	81177875	60	+	.	ID=3871;Type=deletion;Left=chr1:81177357-81177875;Right=chr1:81183548-81183929
chr1	CG	SV	81183548	81183929	60	+	.	ID=3871;Type=deletion;Left=chr1:81177357-81177875;Right=chr1:81183548-81183929
chr1	CG	SV	81432939	81434143	57	.	.	ID=4092;Type=probable-inversion;Left=chr1:81432939-81433633+;Right=chr1:81433953-81434143-;Distance=1204;DiscordantMatePairAlignments=57;LeftRepeat=;RightRepeat=L1MD3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr1	CG	SV	81432939	81433633	57	+	.	ID=4092;Type=probable-inversion;Left=chr1:81432939-81433633;Right=chr1:81433953-81434143
chr1	CG	SV	81433953	81434143	57	+	.	ID=4092;Type=probable-inversion;Left=chr1:81432939-81433633;Right=chr1:81433953-81434143
chr1	CG	SV	82898559	82900691	133	.	.	ID=3869;Type=deletion;Left=chr1:82898559-82899142+;Right=chr1:82900170-82900691+;Distance=1611;DiscordantMatePairAlignments=133;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70959281 (chr1:82898546-82900157);Frequency=1.00
chr1	CG	SV	82898559	82899142	133	+	.	ID=3869;Type=deletion;Left=chr1:82898559-82899142;Right=chr1:82900170-82900691
chr1	CG	SV	82900170	82900691	133	+	.	ID=3869;Type=deletion;Left=chr1:82898559-82899142;Right=chr1:82900170-82900691
chr1	CG	SV	85521222	85522053	20	.	.	ID=3867;Type=deletion;Left=chr1:85521222-85521848+;Right=chr1:85521552-85522053+;Distance=330;DiscordantMatePairAlignments=20;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67084614 (chr1:85521208-85521538);Frequency=0.94
chr1	CG	SV	85521222	85521848	20	+	.	ID=3867;Type=deletion;Left=chr1:85521222-85521848;Right=chr1:85521552-85522053
chr1	CG	SV	85521552	85522053	20	+	.	ID=3867;Type=deletion;Left=chr1:85521222-85521848;Right=chr1:85521552-85522053
chr1	CG	SV	86173439	86177691	84	.	.	ID=3866;Type=deletion;Left=chr1:86173439-86173940+;Right=chr1:86177126-86177691+;Distance=3687;DiscordantMatePairAlignments=84;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=LTR16A:LTR:ERVL;Self chain;LeftGenes=NM_152890:-;RightGenes=NM_152890:-;XRef=;Frequency=0.12
chr1	CG	SV	86173439	86173940	84	+	.	ID=3866;Type=deletion;Left=chr1:86173439-86173940;Right=chr1:86177126-86177691
chr1	CG	SV	86177126	86177691	84	+	.	ID=3866;Type=deletion;Left=chr1:86173439-86173940;Right=chr1:86177126-86177691
chr1	CG	SV	86178393	86179260	12	.	.	ID=3865;Type=deletion;Left=chr1:86178393-86179003+;Right=chr1:86178721-86179260+;Distance=328;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_152890:-;RightGenes=NM_152890:-;XRef=rs67832189 (chr1:86178393-86178721);Frequency=0.88
chr1	CG	SV	86178393	86179003	12	+	.	ID=3865;Type=deletion;Left=chr1:86178393-86179003;Right=chr1:86178721-86179260
chr1	CG	SV	86178721	86179260	12	+	.	ID=3865;Type=deletion;Left=chr1:86178393-86179003;Right=chr1:86178721-86179260
chr1	CG	SV	86513574	86514850	17	.	.	ID=3864;Type=deletion;Left=chr1:86513574-86514000+;Right=chr1:86514291-86514850+;Distance=717;DiscordantMatePairAlignments=17;LeftRepeat=L1HS:LINE:L1;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs70959283 (chr1:86513574-86514291);Frequency=0.82
chr1	CG	SV	86513574	86514000	17	+	.	ID=3864;Type=deletion;Left=chr1:86513574-86514000;Right=chr1:86514291-86514850
chr1	CG	SV	86514291	86514850	17	+	.	ID=3864;Type=deletion;Left=chr1:86513574-86514000;Right=chr1:86514291-86514850
chr1	CG	SV	87689081	87689927	22	.	.	ID=1425;Type=tandem-duplication;Left=chr1:87689081-87689469-;Right=chr1:87689445-87689927-;Distance=458;DiscordantMatePairAlignments=22;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr1	CG	SV	87689081	87689469	22	-	.	ID=1425;Type=tandem-duplication;Left=chr1:87689081-87689469;Right=chr1:87689445-87689927
chr1	CG	SV	87689445	87689927	22	-	.	ID=1425;Type=tandem-duplication;Left=chr1:87689081-87689469;Right=chr1:87689445-87689927
chr1	CG	SV	93034661	93035589	16	.	.	ID=1181;Type=probable-inversion;Left=chr1:93034661-93034805-;Right=chr1:93035056-93035589+;Distance=251;DiscordantMatePairAlignments=16;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	93034661	93034805	16	-	.	ID=1181;Type=probable-inversion;Left=chr1:93034661-93034805;Right=chr1:93035056-93035589
chr1	CG	SV	93035056	93035589	16	-	.	ID=1181;Type=probable-inversion;Left=chr1:93034661-93034805;Right=chr1:93035056-93035589
chr1	CG	SV	94060963	94064489	93	.	.	ID=3854;Type=deletion;Left=chr1:94060963-94061457+;Right=chr1:94063847-94064489+;Distance=2884;DiscordantMatePairAlignments=93;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68045023 (chr1:94060963-94063847);Frequency=0.82
chr1	CG	SV	94060963	94061457	93	+	.	ID=3854;Type=deletion;Left=chr1:94060963-94061457;Right=chr1:94063847-94064489
chr1	CG	SV	94063847	94064489	93	+	.	ID=3854;Type=deletion;Left=chr1:94060963-94061457;Right=chr1:94063847-94064489
chr1	CG	SV	104244722	104245852	41	.	.	ID=3851;Type=deletion;Left=chr1:104244722-104245215+;Right=chr1:104245248-104245852+;Distance=526;DiscordantMatePairAlignments=41;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66586618 (chr1:104244722-104245248);Frequency=0.76
chr1	CG	SV	104244722	104245215	41	+	.	ID=3851;Type=deletion;Left=chr1:104244722-104245215;Right=chr1:104245248-104245852
chr1	CG	SV	104245248	104245852	41	+	.	ID=3851;Type=deletion;Left=chr1:104244722-104245215;Right=chr1:104245248-104245852
chr1	CG	SV	105056597	105058167	37	.	.	ID=3850;Type=deletion;Left=chr1:105056597-105057035+;Right=chr1:105057711-105058167+;Distance=1114;DiscordantMatePairAlignments=37;LeftRepeat=(CATATA)n:Simple_repeat:Simple_repeat;Tandem AT;Tandem ATATAC;Tandem period 8;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	105056597	105057035	37	+	.	ID=3850;Type=deletion;Left=chr1:105056597-105057035;Right=chr1:105057711-105058167
chr1	CG	SV	105057711	105058167	37	+	.	ID=3850;Type=deletion;Left=chr1:105056597-105057035;Right=chr1:105057711-105058167
chr1	CG	SV	109988726	109993210	19	.	.	ID=3848;Type=deletion;Left=chr1:109988726-109989300+;Right=chr1:109992958-109993210+;Distance=4232;DiscordantMatePairAlignments=19;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr1	CG	SV	109988726	109989300	19	+	.	ID=3848;Type=deletion;Left=chr1:109988726-109989300;Right=chr1:109992958-109993210
chr1	CG	SV	109992958	109993210	19	+	.	ID=3848;Type=deletion;Left=chr1:109988726-109989300;Right=chr1:109992958-109993210
chr1	CG	SV	112493315	112506647	45	.	.	ID=3847;Type=deletion;Left=chr1:112493315-112493737+;Right=chr1:112506228-112506647+;Distance=12913;DiscordantMatePairAlignments=45;LeftRepeat=MLT1B-int:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	112493315	112493737	45	+	.	ID=3847;Type=deletion;Left=chr1:112493315-112493737;Right=chr1:112506228-112506647
chr1	CG	SV	112506228	112506647	45	+	.	ID=3847;Type=deletion;Left=chr1:112493315-112493737;Right=chr1:112506228-112506647
chr1	CG	SV	113412857	113415882	11	.	.	ID=3846;Type=deletion;Left=chr1:113412857-113413267+;Right=chr1:113415312-113415882+;Distance=2455;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67241355 (chr1:113412862-113415317);Frequency=0.65
chr1	CG	SV	113412857	113413267	11	+	.	ID=3846;Type=deletion;Left=chr1:113412857-113413267;Right=chr1:113415312-113415882
chr1	CG	SV	113415312	113415882	11	+	.	ID=3846;Type=deletion;Left=chr1:113412857-113413267;Right=chr1:113415312-113415882
chr1	CG	SV	114447400	114456585	18	.	.	ID=1180;Type=distal-duplication;Left=chr1:114447400-114447477-;Right=chr1:114455894-114456585+;Distance=8417;DiscordantMatePairAlignments=18;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_205848:-;RightGenes=NM_205848:-;XRef=;Frequency=0.76
chr1	CG	SV	114447400	114447477	18	-	.	ID=1180;Type=distal-duplication;Left=chr1:114447400-114447477;Right=chr1:114455894-114456585
chr1	CG	SV	114455894	114456585	18	-	.	ID=1180;Type=distal-duplication;Left=chr1:114447400-114447477;Right=chr1:114455894-114456585
chr1	CG	SV	114447553	114455872	26	.	.	ID=4090;Type=distal-duplication;Left=chr1:114447553-114447631+;Right=chr1:114455240-114455872-;Distance=8319;DiscordantMatePairAlignments=26;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_205848:-;RightGenes=NM_205848:-;XRef=;Frequency=0.76
chr1	CG	SV	114447553	114447631	26	+	.	ID=4090;Type=distal-duplication;Left=chr1:114447553-114447631;Right=chr1:114455240-114455872
chr1	CG	SV	114455240	114455872	26	+	.	ID=4090;Type=distal-duplication;Left=chr1:114447553-114447631;Right=chr1:114455240-114455872
chr1	CG	SV	143605640	143606951	23	.	.	ID=3842;Type=deletion;Left=chr1:143605640-143606283+;Right=chr1:143606638-143606951+;Distance=998;DiscordantMatePairAlignments=23;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;RightGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;XRef=rs68115952 (chr1:143605449-143606445);Frequency=1.00
chr1	CG	SV	143605640	143606283	23	+	.	ID=3842;Type=deletion;Left=chr1:143605640-143606283;Right=chr1:143606638-143606951
chr1	CG	SV	143606638	143606951	23	+	.	ID=3842;Type=deletion;Left=chr1:143605640-143606283;Right=chr1:143606638-143606951
chr1	CG	SV	143607654	143618477	14	.	.	ID=3840;Type=deletion;Left=chr1:143607654-143608036+;Right=chr1:143618166-143618477+;Distance=10512;DiscordantMatePairAlignments=14;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;RightGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;XRef=;Frequency=1.00
chr1	CG	SV	143607654	143608036	14	+	.	ID=3840;Type=deletion;Left=chr1:143607654-143608036;Right=chr1:143618166-143618477
chr1	CG	SV	143618166	143618477	14	+	.	ID=3840;Type=deletion;Left=chr1:143607654-143608036;Right=chr1:143618166-143618477
chr1	CG	SV	143804305	143809154	541	.	.	ID=3838;Type=deletion;Left=chr1:143804305-143804964+;Right=chr1:143808440-143809154+;Distance=4135;DiscordantMatePairAlignments=541;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_004892:+;XRef=rs67330508 (chr1:143804305-143808439);Frequency=1.00
chr1	CG	SV	143804305	143804964	541	+	.	ID=3838;Type=deletion;Left=chr1:143804305-143804964;Right=chr1:143808440-143809154
chr1	CG	SV	143808440	143809154	541	+	.	ID=3838;Type=deletion;Left=chr1:143804305-143804964;Right=chr1:143808440-143809154
chr1	CG	SV	151482491	151483397	13	.	.	ID=3836;Type=deletion;Left=chr1:151482491-151482773+;Right=chr1:151483285-151483397+;Distance=794;DiscordantMatePairAlignments=13;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGG;Tandem period 94;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGG;Tandem period 94;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr1	CG	SV	151482491	151482773	13	+	.	ID=3836;Type=deletion;Left=chr1:151482491-151482773;Right=chr1:151483285-151483397
chr1	CG	SV	151483285	151483397	13	+	.	ID=3836;Type=deletion;Left=chr1:151482491-151482773;Right=chr1:151483285-151483397
chr1	CG	SV	154110893	154111830	31	.	.	ID=3835;Type=deletion;Left=chr1:154110893-154111484+;Right=chr1:154111641-154111830+;Distance=748;DiscordantMatePairAlignments=31;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_152280:+;RightGenes=NM_152280:+;XRef=rs72087925 (chr1:154110887-154111635);Frequency=0.35
chr1	CG	SV	154110893	154111484	31	+	.	ID=3835;Type=deletion;Left=chr1:154110893-154111484;Right=chr1:154111641-154111830
chr1	CG	SV	154111641	154111830	31	+	.	ID=3835;Type=deletion;Left=chr1:154110893-154111484;Right=chr1:154111641-154111830
chr1	CG	SV	154793335	154796145	369	.	.	ID=3834;Type=deletion;Left=chr1:154793335-154793936+;Right=chr1:154795566-154796145+;Distance=2231;DiscordantMatePairAlignments=369;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_178229:-;RightGenes=NM_178229:-;XRef=rs68110015 (chr1:154793347-154795578);Frequency=1.00
chr1	CG	SV	154793335	154793936	369	+	.	ID=3834;Type=deletion;Left=chr1:154793335-154793936;Right=chr1:154795566-154796145
chr1	CG	SV	154795566	154796145	369	+	.	ID=3834;Type=deletion;Left=chr1:154793335-154793936;Right=chr1:154795566-154796145
chr1	CG	SV	156153982	156154360	11	.	.	ID=4070;Type=probable-inversion;Left=chr1:156153982-156154786+;Right=chr1:156154145-156154360-;Distance=378;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr1	CG	SV	156153982	156154786	11	+	.	ID=4070;Type=probable-inversion;Left=chr1:156153982-156154786;Right=chr1:156154145-156154360
chr1	CG	SV	156154145	156154360	11	+	.	ID=4070;Type=probable-inversion;Left=chr1:156153982-156154786;Right=chr1:156154145-156154360
chr1	CG	SV	157134157	157136962	27	.	.	ID=3819;Type=deletion;Left=chr1:157134157-157134700+;Right=chr1:157136608-157136962+;Distance=2451;DiscordantMatePairAlignments=27;LeftRepeat=L1MA9:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66519609 (chr1:157134154-157136605);Frequency=1.00
chr1	CG	SV	157134157	157134700	27	+	.	ID=3819;Type=deletion;Left=chr1:157134157-157134700;Right=chr1:157136608-157136962
chr1	CG	SV	157136608	157136962	27	+	.	ID=3819;Type=deletion;Left=chr1:157134157-157134700;Right=chr1:157136608-157136962
chr1	CG	SV	157915332	157916873	91	.	.	ID=3818;Type=deletion;Left=chr1:157915332-157915908+;Right=chr1:157916282-157916873+;Distance=950;DiscordantMatePairAlignments=91;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67706473 (chr1:157915331-157916281);Frequency=0.88
chr1	CG	SV	157915332	157915908	91	+	.	ID=3818;Type=deletion;Left=chr1:157915332-157915908;Right=chr1:157916282-157916873
chr1	CG	SV	157916282	157916873	91	+	.	ID=3818;Type=deletion;Left=chr1:157915332-157915908;Right=chr1:157916282-157916873
chr1	CG	SV	166452513	180541450	68	.	.	ID=1177;Type=probable-inversion;Left=chr1:166452513-166452809-;Right=chr1:180540938-180541450+;Distance=14088129;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	166452513	166452809	68	-	.	ID=1177;Type=probable-inversion;Left=chr1:166452513-166452809;Right=chr1:180540938-180541450
chr1	CG	SV	180540938	180541450	68	-	.	ID=1177;Type=probable-inversion;Left=chr1:166452513-166452809;Right=chr1:180540938-180541450
chr1	CG	SV	175654783	175655191	11	.	.	ID=1403;Type=tandem-duplication;Left=chr1:175654783-175654988-;Right=chr1:175654974-175655191-;Distance=203;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	175654783	175654988	11	-	.	ID=1403;Type=tandem-duplication;Left=chr1:175654783-175654988;Right=chr1:175654974-175655191
chr1	CG	SV	175654974	175655191	11	-	.	ID=1403;Type=tandem-duplication;Left=chr1:175654783-175654988;Right=chr1:175654974-175655191
chr1	CG	SV	177596378	177600763	18	.	.	ID=3816;Type=deletion;Left=chr1:177596378-177596853+;Right=chr1:177600386-177600763+;Distance=4008;DiscordantMatePairAlignments=18;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr1	CG	SV	177596378	177596853	18	+	.	ID=3816;Type=deletion;Left=chr1:177596378-177596853;Right=chr1:177600386-177600763
chr1	CG	SV	177600386	177600763	18	+	.	ID=3816;Type=deletion;Left=chr1:177596378-177596853;Right=chr1:177600386-177600763
chr1	CG	SV	178450469	178450982	10	.	.	ID=3814;Type=deletion;Left=chr1:178450469-178451140+;Right=chr1:178450788-178450982+;Distance=319;DiscordantMatePairAlignments=10;LeftRepeat=AluYh9:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	178450469	178451140	10	+	.	ID=3814;Type=deletion;Left=chr1:178450469-178451140;Right=chr1:178450788-178450982
chr1	CG	SV	178450788	178450982	10	+	.	ID=3814;Type=deletion;Left=chr1:178450469-178451140;Right=chr1:178450788-178450982
chr1	CG	SV	183081364	183088193	153	.	.	ID=3813;Type=deletion;Left=chr1:183081364-183081872+;Right=chr1:183087420-183088193+;Distance=6056;DiscordantMatePairAlignments=153;LeftRepeat=FLAM_C:SINE:Alu;RightRepeat=;LeftGenes=NM_052966:-;RightGenes=NM_052966:-;XRef=rs67214927 (chr1:183081351-183087407);Frequency=0.59
chr1	CG	SV	183081364	183081872	153	+	.	ID=3813;Type=deletion;Left=chr1:183081364-183081872;Right=chr1:183087420-183088193
chr1	CG	SV	183087420	183088193	153	+	.	ID=3813;Type=deletion;Left=chr1:183081364-183081872;Right=chr1:183087420-183088193
chr1	CG	SV	185731451	185733350	40	.	.	ID=4067;Type=complex;Left=chr1:185731451-185732132+;Right=chr1:185733096-185733350-;Distance=1899;DiscordantMatePairAlignments=40;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185731451	185732132	40	+	.	ID=4067;Type=complex;Left=chr1:185731451-185732132;Right=chr1:185733096-185733350
chr1	CG	SV	185733096	185733350	40	+	.	ID=4067;Type=complex;Left=chr1:185731451-185732132;Right=chr1:185733096-185733350
chr1	CG	SV	185731451	185733684	27	.	.	ID=3812;Type=complex;Left=chr1:185731451-185731571+;Right=chr1:185733347-185733684+;Distance=1896;DiscordantMatePairAlignments=27;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185731451	185731571	27	+	.	ID=3812;Type=complex;Left=chr1:185731451-185731571;Right=chr1:185733347-185733684
chr1	CG	SV	185733347	185733684	27	+	.	ID=3812;Type=complex;Left=chr1:185731451-185731571;Right=chr1:185733347-185733684
chr1	CG	SV	185732853	185733962	71	.	.	ID=1169;Type=complex;Left=chr1:185732853-185733098-;Right=chr1:185733355-185733962+;Distance=257;DiscordantMatePairAlignments=71;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185732853	185733098	71	-	.	ID=1169;Type=complex;Left=chr1:185732853-185733098;Right=chr1:185733355-185733962
chr1	CG	SV	185733355	185733962	71	-	.	ID=1169;Type=complex;Left=chr1:185732853-185733098;Right=chr1:185733355-185733962
chr1	CG	SV	185982729	185989663	57	.	.	ID=3811;Type=deletion;Left=chr1:185982729-185983171+;Right=chr1:185989157-185989663+;Distance=6428;DiscordantMatePairAlignments=57;LeftRepeat=LTR52-int:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	185982729	185983171	57	+	.	ID=3811;Type=deletion;Left=chr1:185982729-185983171;Right=chr1:185989157-185989663
chr1	CG	SV	185989157	185989663	57	+	.	ID=3811;Type=deletion;Left=chr1:185982729-185983171;Right=chr1:185989157-185989663
chr1	CG	SV	186806079	186807467	115	.	.	ID=3810;Type=deletion;Left=chr1:186806079-186806607+;Right=chr1:186806854-186807467+;Distance=775;DiscordantMatePairAlignments=115;LeftRepeat=L1MB7:LINE:L1;RightRepeat=L1MCa:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67158349 (chr1:186806079-186806854);Frequency=1.00
chr1	CG	SV	186806079	186806607	115	+	.	ID=3810;Type=deletion;Left=chr1:186806079-186806607;Right=chr1:186806854-186807467
chr1	CG	SV	186806854	186807467	115	+	.	ID=3810;Type=deletion;Left=chr1:186806079-186806607;Right=chr1:186806854-186807467
chr1	CG	SV	187467473	187469001	20	.	.	ID=3809;Type=deletion;Left=chr1:187467473-187467985+;Right=chr1:187468454-187469001+;Distance=981;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=L1P5:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	187467473	187467985	20	+	.	ID=3809;Type=deletion;Left=chr1:187467473-187467985;Right=chr1:187468454-187469001
chr1	CG	SV	187468454	187469001	20	+	.	ID=3809;Type=deletion;Left=chr1:187467473-187467985;Right=chr1:187468454-187469001
chr1	CG	SV	195767143	195770436	205	.	.	ID=3808;Type=deletion;Left=chr1:195767143-195767822+;Right=chr1:195769906-195770436+;Distance=2763;DiscordantMatePairAlignments=205;LeftRepeat=L1HS:LINE:L1;Tandem T;RightRepeat=;LeftGenes=NM_001142795:-;RightGenes=NM_001142795:-;XRef=rs68029239 (chr1:195767131-195769894);Frequency=1.00
chr1	CG	SV	195767143	195767822	205	+	.	ID=3808;Type=deletion;Left=chr1:195767143-195767822;Right=chr1:195769906-195770436
chr1	CG	SV	195769906	195770436	205	+	.	ID=3808;Type=deletion;Left=chr1:195767143-195767822;Right=chr1:195769906-195770436
chr1	CG	SV	197040372	197042478	123	.	.	ID=3806;Type=deletion;Left=chr1:197040372-197041066+;Right=chr1:197042037-197042478+;Distance=1665;DiscordantMatePairAlignments=123;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs71795251 (chr1:197040372-197042037);Frequency=0.29
chr1	CG	SV	197040372	197041066	123	+	.	ID=3806;Type=deletion;Left=chr1:197040372-197041066;Right=chr1:197042037-197042478
chr1	CG	SV	197042037	197042478	123	+	.	ID=3806;Type=deletion;Left=chr1:197040372-197041066;Right=chr1:197042037-197042478
chr1	CG	SV	197705354	197707425	51	.	.	ID=3805;Type=deletion;Left=chr1:197705354-197705811+;Right=chr1:197706861-197707425+;Distance=1507;DiscordantMatePairAlignments=51;LeftRepeat=MLT1A1:LTR:MaLR;RightRepeat=MLT1A1:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67023442 (chr1:197705349-197706856);Frequency=1.00
chr1	CG	SV	197705354	197705811	51	+	.	ID=3805;Type=deletion;Left=chr1:197705354-197705811;Right=chr1:197706861-197707425
chr1	CG	SV	197706861	197707425	51	+	.	ID=3805;Type=deletion;Left=chr1:197705354-197705811;Right=chr1:197706861-197707425
chr1	CG	SV	203445294	203445416	28	.	.	ID=4066;Type=probable-inversion;Left=chr1:203445294-203445900+;Right=chr1:203445273-203445416-;Distance=122;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_015375:-;NM_199462:-;RightGenes=NM_015375:-;NM_199462:-;XRef=;Frequency=0.88
chr1	CG	SV	203445294	203445900	28	+	.	ID=4066;Type=probable-inversion;Left=chr1:203445294-203445900;Right=chr1:203445273-203445416
chr1	CG	SV	203445273	203445416	28	+	.	ID=4066;Type=probable-inversion;Left=chr1:203445294-203445900;Right=chr1:203445273-203445416
chr1	CG	SV	205608640	205612678	93	.	.	ID=3802;Type=deletion;Left=chr1:205608640-205609255+;Right=chr1:205612241-205612678+;Distance=3601;DiscordantMatePairAlignments=93;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66713152 (chr1:205608586-205612187);Frequency=0.59
chr1	CG	SV	205608640	205609255	93	+	.	ID=3802;Type=deletion;Left=chr1:205608640-205609255;Right=chr1:205612241-205612678
chr1	CG	SV	205612241	205612678	93	+	.	ID=3802;Type=deletion;Left=chr1:205608640-205609255;Right=chr1:205612241-205612678
chr1	CG	SV	208144678	208153169	160	.	.	ID=3801;Type=deletion;Left=chr1:208144678-208145116+;Right=chr1:208152600-208153169+;Distance=7922;DiscordantMatePairAlignments=160;LeftRepeat=;RightRepeat=HERVL:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs66502507 (chr1:208144678-208152594);Frequency=0.53
chr1	CG	SV	208144678	208145116	160	+	.	ID=3801;Type=deletion;Left=chr1:208144678-208145116;Right=chr1:208152600-208153169
chr1	CG	SV	208152600	208153169	160	+	.	ID=3801;Type=deletion;Left=chr1:208144678-208145116;Right=chr1:208152600-208153169
chr1	CG	SV	210537776	210539793	105	.	.	ID=3799;Type=deletion;Left=chr1:210537776-210538182+;Right=chr1:210539257-210539793+;Distance=1481;DiscordantMatePairAlignments=105;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_006243:+;RightGenes=NM_006243:+;XRef=rs67798000 (chr1:210537776-210539257);Frequency=0.88
chr1	CG	SV	210537776	210538182	105	+	.	ID=3799;Type=deletion;Left=chr1:210537776-210538182;Right=chr1:210539257-210539793
chr1	CG	SV	210539257	210539793	105	+	.	ID=3799;Type=deletion;Left=chr1:210537776-210538182;Right=chr1:210539257-210539793
chr1	CG	SV	216249125	216255642	54	.	.	ID=3798;Type=deletion;Left=chr1:216249125-216249473+;Right=chr1:216255231-216255642+;Distance=6106;DiscordantMatePairAlignments=54;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	216249125	216249473	54	+	.	ID=3798;Type=deletion;Left=chr1:216249125-216249473;Right=chr1:216255231-216255642
chr1	CG	SV	216255231	216255642	54	+	.	ID=3798;Type=deletion;Left=chr1:216249125-216249473;Right=chr1:216255231-216255642
chr1	CG	SV	216312261	216313621	34	.	.	ID=3797;Type=deletion;Left=chr1:216312261-216312488+;Right=chr1:216313122-216313621+;Distance=861;DiscordantMatePairAlignments=34;LeftRepeat=L1HS:LINE:L1;RightRepeat=MER45B:DNA:Tip100;LeftGenes=;RightGenes=;XRef=rs70942859 (chr1:216312261-216313122);Frequency=0.94
chr1	CG	SV	216312261	216312488	34	+	.	ID=3797;Type=deletion;Left=chr1:216312261-216312488;Right=chr1:216313122-216313621
chr1	CG	SV	216313122	216313621	34	+	.	ID=3797;Type=deletion;Left=chr1:216312261-216312488;Right=chr1:216313122-216313621
chr1	CG	SV	220440788	220447488	47	.	.	ID=3791;Type=deletion;Left=chr1:220440788-220441315+;Right=chr1:220447162-220447488+;Distance=6374;DiscordantMatePairAlignments=47;LeftRepeat=AluSg:SINE:Alu;RightRepeat=L1PA17:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	220440788	220441315	47	+	.	ID=3791;Type=deletion;Left=chr1:220440788-220441315;Right=chr1:220447162-220447488
chr1	CG	SV	220447162	220447488	47	+	.	ID=3791;Type=deletion;Left=chr1:220440788-220441315;Right=chr1:220447162-220447488
chr1	CG	SV	220699143	220699647	11	+	.	ID=3267;Type=interchromosomal;Left=chr1:220699143-220699647+;Right=chr6:154179485-154179832+;Distance=;DiscordantMatePairAlignments=11;LeftRepeat=MSTA:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	154179485	154179832	11	+	.	ID=3267;Type=interchromosomal;Left=chr1:220699143-220699647+;Right=chr6:154179485-154179832+;Distance=;DiscordantMatePairAlignments=11;LeftRepeat=MSTA:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	222313740	222314644	143	.	.	ID=3789;Type=deletion;Left=chr1:222313740-222314371+;Right=chr1:222314216-222314644+;Distance=476;DiscordantMatePairAlignments=143;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67408596 (chr1:222313740-222314216);Frequency=1.00
chr1	CG	SV	222313740	222314371	143	+	.	ID=3789;Type=deletion;Left=chr1:222313740-222314371;Right=chr1:222314216-222314644
chr1	CG	SV	222314216	222314644	143	+	.	ID=3789;Type=deletion;Left=chr1:222313740-222314371;Right=chr1:222314216-222314644
chr1	CG	SV	222459457	222460373	25	.	.	ID=3788;Type=deletion;Left=chr1:222459457-222459888+;Right=chr1:222459770-222460373+;Distance=313;DiscordantMatePairAlignments=25;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10525121 (chr1:222459457-222459770);Frequency=1.00
chr1	CG	SV	222459457	222459888	25	+	.	ID=3788;Type=deletion;Left=chr1:222459457-222459888;Right=chr1:222459770-222460373
chr1	CG	SV	222459770	222460373	25	+	.	ID=3788;Type=deletion;Left=chr1:222459457-222459888;Right=chr1:222459770-222460373
chr1	CG	SV	224069440	224070317	17	.	.	ID=3786;Type=deletion;Left=chr1:224069440-224069914+;Right=chr1:224069767-224070317+;Distance=327;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_001136018:+;RightGenes=NM_001136018:+;XRef=;Frequency=0.35
chr1	CG	SV	224069440	224069914	17	+	.	ID=3786;Type=deletion;Left=chr1:224069440-224069914;Right=chr1:224069767-224070317
chr1	CG	SV	224069767	224070317	17	+	.	ID=3786;Type=deletion;Left=chr1:224069440-224069914;Right=chr1:224069767-224070317
chr1	CG	SV	224927489	224928041	94	+	.	ID=3821;Type=interchromosomal;Left=chr1:224927489-224928041+;Right=chrX:99131085-99131628-;Distance=;DiscordantMatePairAlignments=94;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=NM_002221:-;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	99131085	99131628	94	+	.	ID=3821;Type=interchromosomal;Left=chr1:224927489-224928041+;Right=chrX:99131085-99131628-;Distance=;DiscordantMatePairAlignments=94;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=NM_002221:-;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	225052007	225052895	10	.	.	ID=3785;Type=deletion;Left=chr1:225052007-225052240+;Right=chr1:225052736-225052895+;Distance=729;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 345;Tandem period 39;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	225052007	225052240	10	+	.	ID=3785;Type=deletion;Left=chr1:225052007-225052240;Right=chr1:225052736-225052895
chr1	CG	SV	225052736	225052895	10	+	.	ID=3785;Type=deletion;Left=chr1:225052007-225052240;Right=chr1:225052736-225052895
chr1	CG	SV	227440011	227440804	10	.	.	ID=3783;Type=deletion;Left=chr1:227440011-227440537+;Right=chr1:227440385-227440804+;Distance=374;DiscordantMatePairAlignments=10;LeftRepeat=L1ME4a:LINE:L1;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71748063 (chr1:227440011-227440385);Frequency=0.59
chr1	CG	SV	227440011	227440537	10	+	.	ID=3783;Type=deletion;Left=chr1:227440011-227440537;Right=chr1:227440385-227440804
chr1	CG	SV	227440385	227440804	10	+	.	ID=3783;Type=deletion;Left=chr1:227440011-227440537;Right=chr1:227440385-227440804
chr1	CG	SV	227879160	227888072	79	.	.	ID=3782;Type=deletion;Left=chr1:227879160-227879451+;Right=chr1:227887463-227888072+;Distance=8303;DiscordantMatePairAlignments=79;LeftRepeat=;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66826980 (chr1:227879160-227887463);Frequency=0.47
chr1	CG	SV	227879160	227879451	79	+	.	ID=3782;Type=deletion;Left=chr1:227879160-227879451;Right=chr1:227887463-227888072
chr1	CG	SV	227887463	227888072	79	+	.	ID=3782;Type=deletion;Left=chr1:227879160-227879451;Right=chr1:227887463-227888072
chr1	CG	SV	228199261	228200978	74	.	.	ID=3778;Type=deletion;Left=chr1:228199261-228199928+;Right=chr1:228200501-228200978+;Distance=1240;DiscordantMatePairAlignments=74;LeftRepeat=AluSc:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr1	CG	SV	228199261	228199928	74	+	.	ID=3778;Type=deletion;Left=chr1:228199261-228199928;Right=chr1:228200501-228200978
chr1	CG	SV	228200501	228200978	74	+	.	ID=3778;Type=deletion;Left=chr1:228199261-228199928;Right=chr1:228200501-228200978
chr1	CG	SV	234121214	234122078	12	.	.	ID=3775;Type=deletion;Left=chr1:234121214-234121799+;Right=chr1:234121552-234122078+;Distance=338;DiscordantMatePairAlignments=12;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10705384 (chr1:234121198-234121536);Frequency=0.88
chr1	CG	SV	234121214	234121799	12	+	.	ID=3775;Type=deletion;Left=chr1:234121214-234121799;Right=chr1:234121552-234122078
chr1	CG	SV	234121552	234122078	12	+	.	ID=3775;Type=deletion;Left=chr1:234121214-234121799;Right=chr1:234121552-234122078
chr1	CG	SV	234211106	234211297	39	-	.	ID=525;Type=interchromosomal;Left=chr1:234211106-234211297-;Right=chr6:114667957-114668569+;Distance=;DiscordantMatePairAlignments=39;LeftRepeat=;RightRepeat=;LeftGenes=NM_002508:-;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	114667957	114668569	39	-	.	ID=525;Type=interchromosomal;Left=chr1:234211106-234211297-;Right=chr6:114667957-114668569+;Distance=;DiscordantMatePairAlignments=39;LeftRepeat=;RightRepeat=;LeftGenes=NM_002508:-;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	234615726	234618675	61	.	.	ID=3774;Type=deletion;Left=chr1:234615726-234616109+;Right=chr1:234617969-234618675+;Distance=2243;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67414199 (chr1:234615726-234617969);Frequency=1.00
chr1	CG	SV	234615726	234616109	61	+	.	ID=3774;Type=deletion;Left=chr1:234615726-234616109;Right=chr1:234617969-234618675
chr1	CG	SV	234617969	234618675	61	+	.	ID=3774;Type=deletion;Left=chr1:234615726-234616109;Right=chr1:234617969-234618675
chr1	CG	SV	235632629	235633345	11	.	.	ID=557;Type=probable-inversion;Left=chr1:235632629-235632726-;Right=chr1:235632830-235633345+;Distance=104;DiscordantMatePairAlignments=11;LeftRepeat=AluJb:SINE:Alu;AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_001035:+;RightGenes=NM_001035:+;XRef=;Frequency=1.00
chr1	CG	SV	235632629	235632726	11	-	.	ID=557;Type=probable-inversion;Left=chr1:235632629-235632726;Right=chr1:235632830-235633345
chr1	CG	SV	235632830	235633345	11	-	.	ID=557;Type=probable-inversion;Left=chr1:235632629-235632726;Right=chr1:235632830-235633345
chr1	CG	SV	238707870	238708545	10	.	.	ID=3771;Type=deletion;Left=chr1:238707870-238708442+;Right=chr1:238708272-238708545+;Distance=402;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72000745 (chr1:238707748-238708150);Frequency=0.76
chr1	CG	SV	238707870	238708442	10	+	.	ID=3771;Type=deletion;Left=chr1:238707870-238708442;Right=chr1:238708272-238708545
chr1	CG	SV	238708272	238708545	10	+	.	ID=3771;Type=deletion;Left=chr1:238707870-238708442;Right=chr1:238708272-238708545
chr1	CG	SV	239702746	243353657	66	.	.	ID=4061;Type=probable-inversion;Left=chr1:239702746-239703233+;Right=chr1:243353142-243353657-;Distance=3650911;DiscordantMatePairAlignments=66;LeftRepeat=L1MC2:LINE:L1;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001143943:+;NR_026586:+;NR_026587:+;XRef=;Frequency=0.00
chr1	CG	SV	239702746	239703233	66	+	.	ID=4061;Type=probable-inversion;Left=chr1:239702746-239703233;Right=chr1:243353142-243353657
chr1	CG	SV	243353142	243353657	66	+	.	ID=4061;Type=probable-inversion;Left=chr1:239702746-239703233;Right=chr1:243353142-243353657
chr1	CG	SV	239843175	239845329	64	.	.	ID=556;Type=probable-inversion;Left=chr1:239843175-239843487-;Right=chr1:239844780-239845329+;Distance=1293;DiscordantMatePairAlignments=64;LeftRepeat=;RightRepeat=Tandem period 45;LeftGenes=NM_014322:-;RightGenes=NM_014322:-;XRef=;Frequency=0.00
chr1	CG	SV	239843175	239843487	64	-	.	ID=556;Type=probable-inversion;Left=chr1:239843175-239843487;Right=chr1:239844780-239845329
chr1	CG	SV	239844780	239845329	64	-	.	ID=556;Type=probable-inversion;Left=chr1:239843175-239843487;Right=chr1:239844780-239845329
chr1	CG	SV	241194420	241196183	46	.	.	ID=3768;Type=deletion;Left=chr1:241194420-241194905+;Right=chr1:241195864-241196183+;Distance=1444;DiscordantMatePairAlignments=46;LeftRepeat=AluJo:SINE:Alu;SegDup;Self chain;RightRepeat=AluSp:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr1	CG	SV	241194420	241194905	46	+	.	ID=3768;Type=deletion;Left=chr1:241194420-241194905;Right=chr1:241195864-241196183
chr1	CG	SV	241195864	241196183	46	+	.	ID=3768;Type=deletion;Left=chr1:241194420-241194905;Right=chr1:241195864-241196183
chr1	CG	SV	241849368	241850957	179	.	.	ID=3767;Type=deletion;Left=chr1:241849368-241849925+;Right=chr1:241850378-241850957+;Distance=1010;DiscordantMatePairAlignments=179;LeftRepeat=L1MA4:LINE:L1;RightRepeat=;LeftGenes=NM_005465:-;NM_181690:-;RightGenes=NM_005465:-;NM_181690:-;XRef=rs72260277 (chr1:241849390-241850386);Frequency=0.94
chr1	CG	SV	241849368	241849925	179	+	.	ID=3767;Type=deletion;Left=chr1:241849368-241849925;Right=chr1:241850378-241850957
chr1	CG	SV	241850378	241850957	179	+	.	ID=3767;Type=deletion;Left=chr1:241849368-241849925;Right=chr1:241850378-241850957
chr1	CG	SV	245917098	245923558	41	.	.	ID=3765;Type=deletion;Left=chr1:245917098-245917554+;Right=chr1:245923151-245923558+;Distance=6053;DiscordantMatePairAlignments=41;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72075933 (chr1:245917078-245923131);Frequency=0.94
chr1	CG	SV	245917098	245917554	41	+	.	ID=3765;Type=deletion;Left=chr1:245917098-245917554;Right=chr1:245923151-245923558
chr1	CG	SV	245923151	245923558	41	+	.	ID=3765;Type=deletion;Left=chr1:245917098-245917554;Right=chr1:245923151-245923558
chr2	CG	SV	1337076	1337977	28	.	.	ID=3762;Type=deletion;Left=chr2:1337076-1337634+;Right=chr2:1337523-1337977+;Distance=447;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;Tandem period 106;RightRepeat=MIRb:SINE:MIR;Self chain;Tandem period 115;LeftGenes=NM_018968:+;RightGenes=NM_018968:+;XRef=rs66735644 (chr2:1337076-1337519);Frequency=0.94
chr2	CG	SV	1337076	1337634	28	+	.	ID=3762;Type=deletion;Left=chr2:1337076-1337634;Right=chr2:1337523-1337977
chr2	CG	SV	1337523	1337977	28	+	.	ID=3762;Type=deletion;Left=chr2:1337076-1337634;Right=chr2:1337523-1337977
chr2	CG	SV	1602104	1602962	11	.	.	ID=3761;Type=deletion;Left=chr2:1602104-1602622+;Right=chr2:1602491-1602962+;Distance=387;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 43;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr2	CG	SV	1602104	1602622	11	+	.	ID=3761;Type=deletion;Left=chr2:1602104-1602622;Right=chr2:1602491-1602962
chr2	CG	SV	1602491	1602962	11	+	.	ID=3761;Type=deletion;Left=chr2:1602104-1602622;Right=chr2:1602491-1602962
chr2	CG	SV	1780753	1781633	11	.	.	ID=3760;Type=deletion;Left=chr2:1780753-1781189+;Right=chr2:1781074-1781633+;Distance=321;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 29;Tandem period 59;Tandem period 88;RightRepeat=Self chain;LeftGenes=NM_015025:-;RightGenes=NM_015025:-;XRef=;Frequency=0.71
chr2	CG	SV	1780753	1781189	11	+	.	ID=3760;Type=deletion;Left=chr2:1780753-1781189;Right=chr2:1781074-1781633
chr2	CG	SV	1781074	1781633	11	+	.	ID=3760;Type=deletion;Left=chr2:1780753-1781189;Right=chr2:1781074-1781633
chr2	CG	SV	2777781	2778880	62	.	.	ID=3757;Type=deletion;Left=chr2:2777781-2778225+;Right=chr2:2778251-2778880+;Distance=470;DiscordantMatePairAlignments=62;LeftRepeat=Self chain;Tandem period 31;Tandem period 32;Tandem period 63;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67035310 (chr2:2777781-2778251);Frequency=0.76
chr2	CG	SV	2777781	2778225	62	+	.	ID=3757;Type=deletion;Left=chr2:2777781-2778225;Right=chr2:2778251-2778880
chr2	CG	SV	2778251	2778880	62	+	.	ID=3757;Type=deletion;Left=chr2:2777781-2778225;Right=chr2:2778251-2778880
chr2	CG	SV	3800670	3801646	19	.	.	ID=3756;Type=deletion;Left=chr2:3800670-3800801+;Right=chr2:3801468-3801646+;Distance=798;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;Tandem period 21;RightRepeat=Self chain;Tandem period 21;LeftGenes=;RightGenes=;XRef=rs72441557 (chr2:3800578-3801166);Frequency=0.65
chr2	CG	SV	3800670	3800801	19	+	.	ID=3756;Type=deletion;Left=chr2:3800670-3800801;Right=chr2:3801468-3801646
chr2	CG	SV	3801468	3801646	19	+	.	ID=3756;Type=deletion;Left=chr2:3800670-3800801;Right=chr2:3801468-3801646
chr2	CG	SV	4759185	4765883	57	.	.	ID=3755;Type=deletion;Left=chr2:4759185-4759489+;Right=chr2:4765250-4765883+;Distance=6065;DiscordantMatePairAlignments=57;LeftRepeat=;RightRepeat=L1M:LINE:L1;LeftGenes=;RightGenes=;XRef=rs74164256 (chr2:4759185-4765250);Frequency=1.00
chr2	CG	SV	4759185	4759489	57	+	.	ID=3755;Type=deletion;Left=chr2:4759185-4759489;Right=chr2:4765250-4765883
chr2	CG	SV	4765250	4765883	57	+	.	ID=3755;Type=deletion;Left=chr2:4759185-4759489;Right=chr2:4765250-4765883
chr2	CG	SV	7014439	7017945	65	.	.	ID=3754;Type=deletion;Left=chr2:7014439-7014961+;Right=chr2:7017433-7017945+;Distance=2994;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=MSTC:LTR:MaLR;LeftGenes=NM_014746:+;RightGenes=NM_014746:+;XRef=;Frequency=0.00
chr2	CG	SV	7014439	7014961	65	+	.	ID=3754;Type=deletion;Left=chr2:7014439-7014961;Right=chr2:7017433-7017945
chr2	CG	SV	7017433	7017945	65	+	.	ID=3754;Type=deletion;Left=chr2:7014439-7014961;Right=chr2:7017433-7017945
chr2	CG	SV	9876688	9877585	13	.	.	ID=3752;Type=deletion;Left=chr2:9876688-9877185+;Right=chr2:9877038-9877585+;Distance=350;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=FRAM:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr2	CG	SV	9876688	9877185	13	+	.	ID=3752;Type=deletion;Left=chr2:9876688-9877185;Right=chr2:9877038-9877585
chr2	CG	SV	9877038	9877585	13	+	.	ID=3752;Type=deletion;Left=chr2:9876688-9877185;Right=chr2:9877038-9877585
chr2	CG	SV	10743489	10744646	74	.	.	ID=4060;Type=distal-duplication;Left=chr2:10743489-10743963+;Right=chr2:10744471-10744646-;Distance=1157;DiscordantMatePairAlignments=74;LeftRepeat=AluJb:SINE:Alu;RightRepeat=L3:LINE:CR1;LeftGenes=NM_024894:-;RightGenes=NM_024894:-;XRef=;Frequency=0.35
chr2	CG	SV	10743489	10743963	74	+	.	ID=4060;Type=distal-duplication;Left=chr2:10743489-10743963;Right=chr2:10744471-10744646
chr2	CG	SV	10744471	10744646	74	+	.	ID=4060;Type=distal-duplication;Left=chr2:10743489-10743963;Right=chr2:10744471-10744646
chr2	CG	SV	10742873	10744648	69	.	.	ID=555;Type=distal-duplication;Left=chr2:10742873-10743496-;Right=chr2:10744477-10744648+;Distance=981;DiscordantMatePairAlignments=69;LeftRepeat=AluJb:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=NM_024894:-;RightGenes=NM_024894:-;XRef=;Frequency=0.35
chr2	CG	SV	10742873	10743496	69	-	.	ID=555;Type=distal-duplication;Left=chr2:10742873-10743496;Right=chr2:10744477-10744648
chr2	CG	SV	10744477	10744648	69	-	.	ID=555;Type=distal-duplication;Left=chr2:10742873-10743496;Right=chr2:10744477-10744648
chr2	CG	SV	11166249	11166991	12	.	.	ID=3751;Type=deletion;Left=chr2:11166249-11166811+;Right=chr2:11166610-11166991+;Distance=361;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72468728 (chr2:11166057-11166422);Frequency=0.35
chr2	CG	SV	11166249	11166811	12	+	.	ID=3751;Type=deletion;Left=chr2:11166249-11166811;Right=chr2:11166610-11166991
chr2	CG	SV	11166610	11166991	12	+	.	ID=3751;Type=deletion;Left=chr2:11166249-11166811;Right=chr2:11166610-11166991
chr2	CG	SV	16269891	16271456	16	.	.	ID=3749;Type=deletion;Left=chr2:16269891-16270232+;Right=chr2:16271245-16271456+;Distance=1354;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	16269891	16270232	16	+	.	ID=3749;Type=deletion;Left=chr2:16269891-16270232;Right=chr2:16271245-16271456
chr2	CG	SV	16271245	16271456	16	+	.	ID=3749;Type=deletion;Left=chr2:16269891-16270232;Right=chr2:16271245-16271456
chr2	CG	SV	17109425	17110039	55	-	.	ID=524;Type=interchromosomal;Left=chr2:17109425-17110039-;Right=chr9:121845640-121846311+;Distance=;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	121845640	121846311	55	-	.	ID=524;Type=interchromosomal;Left=chr2:17109425-17110039-;Right=chr9:121845640-121846311+;Distance=;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	20530159	20531073	15	.	.	ID=3748;Type=deletion;Left=chr2:20530159-20530670+;Right=chr2:20530466-20531073+;Distance=307;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67436233 (chr2:20530159-20530466);Frequency=0.47
chr2	CG	SV	20530159	20530670	15	+	.	ID=3748;Type=deletion;Left=chr2:20530159-20530670;Right=chr2:20530466-20531073
chr2	CG	SV	20530466	20531073	15	+	.	ID=3748;Type=deletion;Left=chr2:20530159-20530670;Right=chr2:20530466-20531073
chr2	CG	SV	22721500	22721966	26	+	.	ID=4053;Type=interchromosomal;Left=chr2:22721500-22721966+;Right=chr5:2591838-2592296-;Distance=;DiscordantMatePairAlignments=26;LeftRepeat=L1MEc:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	2591838	2592296	26	+	.	ID=4053;Type=interchromosomal;Left=chr2:22721500-22721966+;Right=chr5:2591838-2592296-;Distance=;DiscordantMatePairAlignments=26;LeftRepeat=L1MEc:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	33077966	33081218	120	.	.	ID=3367;Type=deletion;Left=chr2:33077966-33078453+;Right=chr2:33080796-33081218+;Distance=2830;DiscordantMatePairAlignments=120;LeftRepeat=MER5B:DNA:MER1_type;RightRepeat=;LeftGenes=NM_206943:+;RightGenes=NM_206943:+;XRef=rs72458672 (chr2:33077966-33080796);Frequency=0.59
chr2	CG	SV	33077966	33078453	120	+	.	ID=3367;Type=deletion;Left=chr2:33077966-33078453;Right=chr2:33080796-33081218
chr2	CG	SV	33080796	33081218	120	+	.	ID=3367;Type=deletion;Left=chr2:33077966-33078453;Right=chr2:33080796-33081218
chr2	CG	SV	34377160	34379567	57	.	.	ID=3366;Type=deletion;Left=chr2:34377160-34377588+;Right=chr2:34379225-34379567+;Distance=2065;DiscordantMatePairAlignments=57;LeftRepeat=;RightRepeat=L1PA6:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67806724 (chr2:34377158-34379223);Frequency=0.76
chr2	CG	SV	34377160	34377588	57	+	.	ID=3366;Type=deletion;Left=chr2:34377160-34377588;Right=chr2:34379225-34379567
chr2	CG	SV	34379225	34379567	57	+	.	ID=3366;Type=deletion;Left=chr2:34377160-34377588;Right=chr2:34379225-34379567
chr2	CG	SV	34819231	34821243	16	.	.	ID=3364;Type=deletion;Left=chr2:34819231-34819577+;Right=chr2:34820773-34821243+;Distance=1542;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr2	CG	SV	34819231	34819577	16	+	.	ID=3364;Type=deletion;Left=chr2:34819231-34819577;Right=chr2:34820773-34821243
chr2	CG	SV	34820773	34821243	16	+	.	ID=3364;Type=deletion;Left=chr2:34819231-34819577;Right=chr2:34820773-34821243
chr2	CG	SV	41629470	41635282	33	.	.	ID=3363;Type=deletion;Left=chr2:41629470-41630000+;Right=chr2:41634787-41635282+;Distance=5317;DiscordantMatePairAlignments=33;LeftRepeat=;RightRepeat=L1P5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66488562 (chr2:41629470-41634786);Frequency=0.47
chr2	CG	SV	41629470	41630000	33	+	.	ID=3363;Type=deletion;Left=chr2:41629470-41630000;Right=chr2:41634787-41635282
chr2	CG	SV	41634787	41635282	33	+	.	ID=3363;Type=deletion;Left=chr2:41629470-41630000;Right=chr2:41634787-41635282
chr2	CG	SV	41826660	41829844	17	.	.	ID=3362;Type=deletion;Left=chr2:41826660-41827019+;Right=chr2:41829384-41829844+;Distance=2724;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66596405 (chr2:41826660-41829384);Frequency=1.00
chr2	CG	SV	41826660	41827019	17	+	.	ID=3362;Type=deletion;Left=chr2:41826660-41827019;Right=chr2:41829384-41829844
chr2	CG	SV	41829384	41829844	17	+	.	ID=3362;Type=deletion;Left=chr2:41826660-41827019;Right=chr2:41829384-41829844
chr2	CG	SV	42199763	42201280	60	.	.	ID=3361;Type=deletion;Left=chr2:42199763-42200189+;Right=chr2:42200822-42201280+;Distance=1059;DiscordantMatePairAlignments=60;LeftRepeat=L1ME1:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr2	CG	SV	42199763	42200189	60	+	.	ID=3361;Type=deletion;Left=chr2:42199763-42200189;Right=chr2:42200822-42201280
chr2	CG	SV	42200822	42201280	60	+	.	ID=3361;Type=deletion;Left=chr2:42199763-42200189;Right=chr2:42200822-42201280
chr2	CG	SV	44337953	44345248	33	.	.	ID=3359;Type=deletion;Left=chr2:44337953-44338543+;Right=chr2:44345037-44345248+;Distance=7084;DiscordantMatePairAlignments=33;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	44337953	44338543	33	+	.	ID=3359;Type=deletion;Left=chr2:44337953-44338543;Right=chr2:44345037-44345248
chr2	CG	SV	44345037	44345248	33	+	.	ID=3359;Type=deletion;Left=chr2:44337953-44338543;Right=chr2:44345037-44345248
chr2	CG	SV	51078052	51079384	28	.	.	ID=3357;Type=deletion;Left=chr2:51078052-51078556+;Right=chr2:51079047-51079384+;Distance=995;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_001135659:-;NM_004801:-;RightGenes=NM_001135659:-;NM_004801:-;XRef=rs67948039 (chr2:51078051-51079046);Frequency=0.06
chr2	CG	SV	51078052	51078556	28	+	.	ID=3357;Type=deletion;Left=chr2:51078052-51078556;Right=chr2:51079047-51079384
chr2	CG	SV	51079047	51079384	28	+	.	ID=3357;Type=deletion;Left=chr2:51078052-51078556;Right=chr2:51079047-51079384
chr2	CG	SV	51780091	51781808	28	.	.	ID=3356;Type=deletion;Left=chr2:51780091-51780571+;Right=chr2:51781274-51781808+;Distance=1183;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr2	CG	SV	51780091	51780571	28	+	.	ID=3356;Type=deletion;Left=chr2:51780091-51780571;Right=chr2:51781274-51781808
chr2	CG	SV	51781274	51781808	28	+	.	ID=3356;Type=deletion;Left=chr2:51780091-51780571;Right=chr2:51781274-51781808
chr2	CG	SV	53626037	53631930	62	.	.	ID=3353;Type=deletion;Left=chr2:53626037-53626515+;Right=chr2:53631348-53631930+;Distance=5311;DiscordantMatePairAlignments=62;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	53626037	53626515	62	+	.	ID=3353;Type=deletion;Left=chr2:53626037-53626515;Right=chr2:53631348-53631930
chr2	CG	SV	53631348	53631930	62	+	.	ID=3353;Type=deletion;Left=chr2:53626037-53626515;Right=chr2:53631348-53631930
chr2	CG	SV	54418997	54421452	19	.	.	ID=3352;Type=deletion;Left=chr2:54418997-54419588+;Right=chr2:54420977-54421452+;Distance=1980;DiscordantMatePairAlignments=19;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_001100396:+;RightGenes=NM_001100396:+;XRef=rs66784896 (chr2:54419000-54420977);Frequency=0.94
chr2	CG	SV	54418997	54419588	19	+	.	ID=3352;Type=deletion;Left=chr2:54418997-54419588;Right=chr2:54420977-54421452
chr2	CG	SV	54420977	54421452	19	+	.	ID=3352;Type=deletion;Left=chr2:54418997-54419588;Right=chr2:54420977-54421452
chr2	CG	SV	60547860	60548954	11	.	.	ID=3350;Type=deletion;Left=chr2:60547860-60548133+;Right=chr2:60548793-60548954+;Distance=933;DiscordantMatePairAlignments=11;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Tandem period 15;Tandem period 27;Tandem period 39;Tandem period 48;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Tandem period 15;Tandem period 27;Tandem period 48;LeftGenes=NM_018014:-;NM_022893:-;NM_138559:-;RightGenes=NM_018014:-;NM_022893:-;NM_138559:-;XRef=;Frequency=0.25
chr2	CG	SV	60547860	60548133	11	+	.	ID=3350;Type=deletion;Left=chr2:60547860-60548133;Right=chr2:60548793-60548954
chr2	CG	SV	60548793	60548954	11	+	.	ID=3350;Type=deletion;Left=chr2:60547860-60548133;Right=chr2:60548793-60548954
chr2	CG	SV	61553945	61556959	41	.	.	ID=552;Type=probable-inversion;Left=chr2:61553945-61554366-;Right=chr2:61556598-61556959+;Distance=2232;DiscordantMatePairAlignments=41;LeftRepeat=AluJo:SINE:Alu;RightRepeat=AluJo/FRAM:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr2	CG	SV	61553945	61554366	41	-	.	ID=552;Type=probable-inversion;Left=chr2:61553945-61554366;Right=chr2:61556598-61556959
chr2	CG	SV	61556598	61556959	41	-	.	ID=552;Type=probable-inversion;Left=chr2:61553945-61554366;Right=chr2:61556598-61556959
chr2	CG	SV	66359098	66361565	196	.	.	ID=3348;Type=deletion;Left=chr2:66359098-66359680+;Right=chr2:66361062-66361565+;Distance=1964;DiscordantMatePairAlignments=196;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs67498305 (chr2:66359098-66361062);Frequency=0.41
chr2	CG	SV	66359098	66359680	196	+	.	ID=3348;Type=deletion;Left=chr2:66359098-66359680;Right=chr2:66361062-66361565
chr2	CG	SV	66361062	66361565	196	+	.	ID=3348;Type=deletion;Left=chr2:66359098-66359680;Right=chr2:66361062-66361565
chr2	CG	SV	69978557	69979504	40	.	.	ID=3347;Type=deletion;Left=chr2:69978557-69979034+;Right=chr2:69979078-69979504+;Distance=521;DiscordantMatePairAlignments=40;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;LeftGenes=NM_006857:+;RightGenes=NM_006857:+;XRef=rs67525018 (chr2:69978548-69979069);Frequency=0.76
chr2	CG	SV	69978557	69979034	40	+	.	ID=3347;Type=deletion;Left=chr2:69978557-69979034;Right=chr2:69979078-69979504
chr2	CG	SV	69979078	69979504	40	+	.	ID=3347;Type=deletion;Left=chr2:69978557-69979034;Right=chr2:69979078-69979504
chr2	CG	SV	76380014	76382966	54	.	.	ID=3345;Type=deletion;Left=chr2:76380014-76380522+;Right=chr2:76382409-76382966+;Distance=2395;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=L1HS:LINE:L1;LeftGenes=;RightGenes=;XRef=rs68153335 (chr2:76380020-76382415);Frequency=1.00
chr2	CG	SV	76380014	76380522	54	+	.	ID=3345;Type=deletion;Left=chr2:76380014-76380522;Right=chr2:76382409-76382966
chr2	CG	SV	76382409	76382966	54	+	.	ID=3345;Type=deletion;Left=chr2:76380014-76380522;Right=chr2:76382409-76382966
chr2	CG	SV	77971399	77972513	29	.	.	ID=3344;Type=deletion;Left=chr2:77971399-77971946+;Right=chr2:77971866-77972513+;Distance=467;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=L1MA7:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72224379 (chr2:77971399-77971865);Frequency=0.47
chr2	CG	SV	77971399	77971946	29	+	.	ID=3344;Type=deletion;Left=chr2:77971399-77971946;Right=chr2:77971866-77972513
chr2	CG	SV	77971866	77972513	29	+	.	ID=3344;Type=deletion;Left=chr2:77971399-77971946;Right=chr2:77971866-77972513
chr2	CG	SV	79970542	80021758	52	.	.	ID=1350;Type=tandem-duplication;Left=chr2:79970542-79970949-;Right=chr2:80021319-80021758-;Distance=50809;DiscordantMatePairAlignments=52;LeftRepeat=;RightRepeat=;LeftGenes=NM_001164883:+;NM_004389:+;RightGenes=NM_001164883:+;NM_004389:+;XRef=;Frequency=0.00
chr2	CG	SV	79970542	79970949	52	-	.	ID=1350;Type=tandem-duplication;Left=chr2:79970542-79970949;Right=chr2:80021319-80021758
chr2	CG	SV	80021319	80021758	52	-	.	ID=1350;Type=tandem-duplication;Left=chr2:79970542-79970949;Right=chr2:80021319-80021758
chr2	CG	SV	88810357	88814005	262	.	.	ID=3341;Type=deletion;Left=chr2:88810357-88810965+;Right=chr2:88813411-88814005+;Distance=3054;DiscordantMatePairAlignments=262;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_144563:+;RightGenes=NM_144563:+;XRef=rs71858468 (chr2:88810361-88813415);Frequency=1.00
chr2	CG	SV	88810357	88810965	262	+	.	ID=3341;Type=deletion;Left=chr2:88810357-88810965;Right=chr2:88813411-88814005
chr2	CG	SV	88813411	88814005	262	+	.	ID=3341;Type=deletion;Left=chr2:88810357-88810965;Right=chr2:88813411-88814005
chr2	CG	SV	91148213	91149268	14	.	.	ID=3339;Type=deletion;Left=chr2:91148213-91148579+;Right=chr2:91148991-91149268+;Distance=778;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=AluSq:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs6146841 (chr2:91148022-91148798);Frequency=0.94
chr2	CG	SV	91148213	91148579	14	+	.	ID=3339;Type=deletion;Left=chr2:91148213-91148579;Right=chr2:91148991-91149268
chr2	CG	SV	91148991	91149268	14	+	.	ID=3339;Type=deletion;Left=chr2:91148213-91148579;Right=chr2:91148991-91149268
chr2	CG	SV	94892322	94912087	43	.	.	ID=3338;Type=deletion;Left=chr2:94892322-94892700+;Right=chr2:94911773-94912087+;Distance=19451;DiscordantMatePairAlignments=43;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr2	CG	SV	94892322	94892700	43	+	.	ID=3338;Type=deletion;Left=chr2:94892322-94892700;Right=chr2:94911773-94912087
chr2	CG	SV	94911773	94912087	43	+	.	ID=3338;Type=deletion;Left=chr2:94892322-94892700;Right=chr2:94911773-94912087
chr2	CG	SV	101343610	101347201	23	.	.	ID=3334;Type=deletion;Left=chr2:101343610-101344076+;Right=chr2:101346945-101347201+;Distance=3335;DiscordantMatePairAlignments=23;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=MER20B:DNA:MER1_type;Self chain;LeftGenes=NM_153836:-;RightGenes=NM_153836:-;XRef=;Frequency=0.00
chr2	CG	SV	101343610	101344076	23	+	.	ID=3334;Type=deletion;Left=chr2:101343610-101344076;Right=chr2:101346945-101347201
chr2	CG	SV	101346945	101347201	23	+	.	ID=3334;Type=deletion;Left=chr2:101343610-101344076;Right=chr2:101346945-101347201
chr2	CG	SV	108676986	108678690	32	.	.	ID=3258;Type=deletion;Left=chr2:108676986-108677573+;Right=chr2:108678542-108678690+;Distance=1556;DiscordantMatePairAlignments=32;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L1MB7:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71831316 (chr2:108676746-108678213);Frequency=0.41
chr2	CG	SV	108676986	108677573	32	+	.	ID=3258;Type=deletion;Left=chr2:108676986-108677573;Right=chr2:108678542-108678690
chr2	CG	SV	108678542	108678690	32	+	.	ID=3258;Type=deletion;Left=chr2:108676986-108677573;Right=chr2:108678542-108678690
chr2	CG	SV	110210043	111170146	78	.	.	ID=3257;Type=deletion;Left=chr2:110210043-110210616+;Right=chr2:111169574-111170146+;Distance=959531;DiscordantMatePairAlignments=78;LeftRepeat=SegDup;Self chain;RightRepeat=LTR19B:LTR:ERV1;Self chain;LeftGenes=NM_005434:-;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	110210043	110210616	78	+	.	ID=3257;Type=deletion;Left=chr2:110210043-110210616;Right=chr2:111169574-111170146
chr2	CG	SV	111169574	111170146	78	+	.	ID=3257;Type=deletion;Left=chr2:110210043-110210616;Right=chr2:111169574-111170146
chr2	CG	SV	116691104	116695215	26	.	.	ID=3255;Type=complex;Left=chr2:116691104-116691395+;Right=chr2:116694774-116695215+;Distance=3670;DiscordantMatePairAlignments=26;LeftRepeat=Charlie4:DNA:MER1_type;RightRepeat=L1M4c:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67592537 (chr2:116691104-116694774);Frequency=0.24
chr2	CG	SV	116691104	116691395	26	+	.	ID=3255;Type=complex;Left=chr2:116691104-116691395;Right=chr2:116694774-116695215
chr2	CG	SV	116694774	116695215	26	+	.	ID=3255;Type=complex;Left=chr2:116691104-116691395;Right=chr2:116694774-116695215
chr2	CG	SV	116694769	116698777	39	.	.	ID=4017;Type=complex;Left=chr2:116694769-116695138+;Right=chr2:116698364-116698777-;Distance=4008;DiscordantMatePairAlignments=39;LeftRepeat=L1M4c:LINE:L1;RightRepeat=L1M4c:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr2	CG	SV	116694769	116695138	39	+	.	ID=4017;Type=complex;Left=chr2:116694769-116695138;Right=chr2:116698364-116698777
chr2	CG	SV	116698364	116698777	39	+	.	ID=4017;Type=complex;Left=chr2:116694769-116695138;Right=chr2:116698364-116698777
chr2	CG	SV	117051406	117052273	10	.	.	ID=3254;Type=deletion;Left=chr2:117051406-117051872+;Right=chr2:117051722-117052273+;Distance=316;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L1MA1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr2	CG	SV	117051406	117051872	10	+	.	ID=3254;Type=deletion;Left=chr2:117051406-117051872;Right=chr2:117051722-117052273
chr2	CG	SV	117051722	117052273	10	+	.	ID=3254;Type=deletion;Left=chr2:117051406-117051872;Right=chr2:117051722-117052273
chr2	CG	SV	119762084	119767687	58	.	.	ID=3253;Type=deletion;Left=chr2:119762084-119762595+;Right=chr2:119767011-119767687+;Distance=4927;DiscordantMatePairAlignments=58;LeftRepeat=L1ME2:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	119762084	119762595	58	+	.	ID=3253;Type=deletion;Left=chr2:119762084-119762595;Right=chr2:119767011-119767687
chr2	CG	SV	119767011	119767687	58	+	.	ID=3253;Type=deletion;Left=chr2:119762084-119762595;Right=chr2:119767011-119767687
chr2	CG	SV	119998882	119999614	115	.	.	ID=1343;Type=tandem-duplication;Left=chr2:119998882-119999252-;Right=chr2:119999293-119999614-;Distance=362;DiscordantMatePairAlignments=115;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr2	CG	SV	119998882	119999252	115	-	.	ID=1343;Type=tandem-duplication;Left=chr2:119998882-119999252;Right=chr2:119999293-119999614
chr2	CG	SV	119999293	119999614	115	-	.	ID=1343;Type=tandem-duplication;Left=chr2:119998882-119999252;Right=chr2:119999293-119999614
chr2	CG	SV	120133424	120134958	65	.	.	ID=1342;Type=distal-duplication;Left=chr2:120133424-120133549-;Right=chr2:120134295-120134958-;Distance=1409;DiscordantMatePairAlignments=65;LeftRepeat=L1MC4a:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	120133424	120133549	65	-	.	ID=1342;Type=distal-duplication;Left=chr2:120133424-120133549;Right=chr2:120134295-120134958
chr2	CG	SV	120134295	120134958	65	-	.	ID=1342;Type=distal-duplication;Left=chr2:120133424-120133549;Right=chr2:120134295-120134958
chr2	CG	SV	120133670	120135528	26	.	.	ID=3252;Type=distal-duplication;Left=chr2:120133670-120133790+;Right=chr2:120134968-120135528+;Distance=1298;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72020679 (chr2:120133667-120134965);Frequency=0.94
chr2	CG	SV	120133670	120133790	26	+	.	ID=3252;Type=distal-duplication;Left=chr2:120133670-120133790;Right=chr2:120134968-120135528
chr2	CG	SV	120134968	120135528	26	+	.	ID=3252;Type=distal-duplication;Left=chr2:120133670-120133790;Right=chr2:120134968-120135528
chr2	CG	SV	123081348	123082367	29	.	.	ID=3250;Type=deletion;Left=chr2:123081348-123081886+;Right=chr2:123081846-123082367+;Distance=498;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr2	CG	SV	123081348	123081886	29	+	.	ID=3250;Type=deletion;Left=chr2:123081348-123081886;Right=chr2:123081846-123082367
chr2	CG	SV	123081846	123082367	29	+	.	ID=3250;Type=deletion;Left=chr2:123081348-123081886;Right=chr2:123081846-123082367
chr2	CG	SV	124768226	124769710	47	.	.	ID=4016;Type=probable-inversion;Left=chr2:124768226-124768698+;Right=chr2:124769384-124769710-;Distance=1484;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=MER41B:LTR:ERV1;LeftGenes=NM_130773:+;RightGenes=NM_130773:+;XRef=;Frequency=0.82
chr2	CG	SV	124768226	124768698	47	+	.	ID=4016;Type=probable-inversion;Left=chr2:124768226-124768698;Right=chr2:124769384-124769710
chr2	CG	SV	124769384	124769710	47	+	.	ID=4016;Type=probable-inversion;Left=chr2:124768226-124768698;Right=chr2:124769384-124769710
chr2	CG	SV	125483031	125484864	16	.	.	ID=3249;Type=distal-duplication;Left=chr2:125483031-125483348+;Right=chr2:125484718-125484864+;Distance=1687;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr2	CG	SV	125483031	125483348	16	+	.	ID=3249;Type=distal-duplication;Left=chr2:125483031-125483348;Right=chr2:125484718-125484864
chr2	CG	SV	125484718	125484864	16	+	.	ID=3249;Type=distal-duplication;Left=chr2:125483031-125483348;Right=chr2:125484718-125484864
chr2	CG	SV	125482513	125484871	44	.	.	ID=1341;Type=distal-duplication;Left=chr2:125482513-125483031-;Right=chr2:125484715-125484871-;Distance=1840;DiscordantMatePairAlignments=44;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr2	CG	SV	125482513	125483031	44	-	.	ID=1341;Type=distal-duplication;Left=chr2:125482513-125483031;Right=chr2:125484715-125484871
chr2	CG	SV	125484715	125484871	44	-	.	ID=1341;Type=distal-duplication;Left=chr2:125482513-125483031;Right=chr2:125484715-125484871
chr2	CG	SV	126159721	126169070	124	.	.	ID=3248;Type=deletion;Left=chr2:126159721-126160280+;Right=chr2:126168305-126169070+;Distance=8584;DiscordantMatePairAlignments=124;LeftRepeat=L1MD1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66740069 (chr2:126159717-126168301);Frequency=0.88
chr2	CG	SV	126159721	126160280	124	+	.	ID=3248;Type=deletion;Left=chr2:126159721-126160280;Right=chr2:126168305-126169070
chr2	CG	SV	126168305	126169070	124	+	.	ID=3248;Type=deletion;Left=chr2:126159721-126160280;Right=chr2:126168305-126169070
chr2	CG	SV	127391228	127394242	167	.	.	ID=3247;Type=deletion;Left=chr2:127391228-127391906+;Right=chr2:127393744-127394242+;Distance=2516;DiscordantMatePairAlignments=167;LeftRepeat=;RightRepeat=L1MEd:LINE:L1;LeftGenes=;RightGenes=;XRef=rs74164329 (chr2:127391228-127393744);Frequency=1.00
chr2	CG	SV	127391228	127391906	167	+	.	ID=3247;Type=deletion;Left=chr2:127391228-127391906;Right=chr2:127393744-127394242
chr2	CG	SV	127393744	127394242	167	+	.	ID=3247;Type=deletion;Left=chr2:127391228-127391906;Right=chr2:127393744-127394242
chr2	CG	SV	131603362	131603569	23	.	.	ID=4015;Type=probable-inversion;Left=chr2:131603362-131603681+;Right=chr2:131603392-131603569-;Distance=207;DiscordantMatePairAlignments=23;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSq:SINE:Alu;Self chain;LeftGenes=NM_001100623:+;NM_017958:+;RightGenes=NM_001100623:+;NM_017958:+;XRef=;Frequency=0.94
chr2	CG	SV	131603362	131603681	23	+	.	ID=4015;Type=probable-inversion;Left=chr2:131603362-131603681;Right=chr2:131603392-131603569
chr2	CG	SV	131603392	131603569	23	+	.	ID=4015;Type=probable-inversion;Left=chr2:131603362-131603681;Right=chr2:131603392-131603569
chr2	CG	SV	132733912	132735731	972	.	.	ID=3245;Type=deletion;Left=chr2:132733912-132734576+;Right=chr2:132735185-132735731+;Distance=1273;DiscordantMatePairAlignments=972;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs72407802 (chr2:132733904-132735114);Frequency=1.00
chr2	CG	SV	132733912	132734576	972	+	.	ID=3245;Type=deletion;Left=chr2:132733912-132734576;Right=chr2:132735185-132735731
chr2	CG	SV	132735185	132735731	972	+	.	ID=3245;Type=deletion;Left=chr2:132733912-132734576;Right=chr2:132735185-132735731
chr2	CG	SV	132736921	132737463	149	+	.	ID=3723;Type=complex;Left=chr2:132736921-132737463+;Right=chr17:42569524-42569727-;Distance=;DiscordantMatePairAlignments=149;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=0.00
chr17	CG	SV	42569524	42569727	149	+	.	ID=3723;Type=complex;Left=chr2:132736921-132737463+;Right=chr17:42569524-42569727-;Distance=;DiscordantMatePairAlignments=149;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=0.00
chr2	CG	SV	132742750	132747162	303	.	.	ID=1339;Type=complex;Left=chr2:132742750-132743136-;Right=chr2:132746878-132747162-;Distance=4026;DiscordantMatePairAlignments=303;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	132742750	132743136	303	-	.	ID=1339;Type=complex;Left=chr2:132742750-132743136;Right=chr2:132746878-132747162
chr2	CG	SV	132746878	132747162	303	-	.	ID=1339;Type=complex;Left=chr2:132742750-132743136;Right=chr2:132746878-132747162
chr2	CG	SV	132747202	132747526	63	+	.	ID=2912;Type=complex;Left=chr2:132747202-132747526+;Right=chr12:36735025-36735171+;Distance=;DiscordantMatePairAlignments=63;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	36735025	36735171	63	+	.	ID=2912;Type=complex;Left=chr2:132747202-132747526+;Right=chr12:36735025-36735171+;Distance=;DiscordantMatePairAlignments=63;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	134683177	134687267	144	.	.	ID=3242;Type=deletion;Left=chr2:134683177-134683639+;Right=chr2:134686607-134687267+;Distance=3430;DiscordantMatePairAlignments=144;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67845770 (chr2:134683170-134686600);Frequency=0.94
chr2	CG	SV	134683177	134683639	144	+	.	ID=3242;Type=deletion;Left=chr2:134683177-134683639;Right=chr2:134686607-134687267
chr2	CG	SV	134686607	134687267	144	+	.	ID=3242;Type=deletion;Left=chr2:134683177-134683639;Right=chr2:134686607-134687267
chr2	CG	SV	146579091	146593863	87	.	.	ID=3236;Type=deletion;Left=chr2:146579091-146579611+;Right=chr2:146593334-146593863+;Distance=14243;DiscordantMatePairAlignments=87;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=MLT1H-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr2	CG	SV	146579091	146579611	87	+	.	ID=3236;Type=deletion;Left=chr2:146579091-146579611;Right=chr2:146593334-146593863
chr2	CG	SV	146593334	146593863	87	+	.	ID=3236;Type=deletion;Left=chr2:146579091-146579611;Right=chr2:146593334-146593863
chr2	CG	SV	152325547	152326328	11	.	.	ID=3234;Type=deletion;Left=chr2:152325547-152326162+;Right=chr2:152325862-152326328+;Distance=315;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72556448 (chr2:152325534-152325849);Frequency=0.94
chr2	CG	SV	152325547	152326162	11	+	.	ID=3234;Type=deletion;Left=chr2:152325547-152326162;Right=chr2:152325862-152326328
chr2	CG	SV	152325862	152326328	11	+	.	ID=3234;Type=deletion;Left=chr2:152325547-152326162;Right=chr2:152325862-152326328
chr2	CG	SV	153168165	153169936	23	.	.	ID=3233;Type=complex;Left=chr2:153168165-153168471+;Right=chr2:153169692-153169936+;Distance=1527;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=;LeftGenes=NM_052905:+;RightGenes=NM_052905:+;XRef=;Frequency=0.29
chr2	CG	SV	153168165	153168471	23	+	.	ID=3233;Type=complex;Left=chr2:153168165-153168471;Right=chr2:153169692-153169936
chr2	CG	SV	153169692	153169936	23	+	.	ID=3233;Type=complex;Left=chr2:153168165-153168471;Right=chr2:153169692-153169936
chr2	CG	SV	153168999	153170058	17	.	.	ID=517;Type=complex;Left=chr2:153168999-153169341-;Right=chr2:153169694-153170058+;Distance=353;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=;LeftGenes=NM_052905:+;RightGenes=NM_052905:+;XRef=;Frequency=0.29
chr2	CG	SV	153168999	153169341	17	-	.	ID=517;Type=complex;Left=chr2:153168999-153169341;Right=chr2:153169694-153170058
chr2	CG	SV	153169694	153170058	17	-	.	ID=517;Type=complex;Left=chr2:153168999-153169341;Right=chr2:153169694-153170058
chr2	CG	SV	153504241	153508350	36	.	.	ID=3232;Type=deletion;Left=chr2:153504241-153504625+;Right=chr2:153507989-153508350+;Distance=3748;DiscordantMatePairAlignments=36;LeftRepeat=L1PA14:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr2	CG	SV	153504241	153504625	36	+	.	ID=3232;Type=deletion;Left=chr2:153504241-153504625;Right=chr2:153507989-153508350
chr2	CG	SV	153507989	153508350	36	+	.	ID=3232;Type=deletion;Left=chr2:153504241-153504625;Right=chr2:153507989-153508350
chr2	CG	SV	159857371	159860390	96	.	.	ID=3231;Type=deletion;Left=chr2:159857371-159857964+;Right=chr2:159859902-159860390+;Distance=2531;DiscordantMatePairAlignments=96;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66968272 (chr2:159857372-159859903);Frequency=1.00
chr2	CG	SV	159857371	159857964	96	+	.	ID=3231;Type=deletion;Left=chr2:159857371-159857964;Right=chr2:159859902-159860390
chr2	CG	SV	159859902	159860390	96	+	.	ID=3231;Type=deletion;Left=chr2:159857371-159857964;Right=chr2:159859902-159860390
chr2	CG	SV	176054920	176061552	86	.	.	ID=3226;Type=deletion;Left=chr2:176054920-176055413+;Right=chr2:176060973-176061552+;Distance=6053;DiscordantMatePairAlignments=86;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68056211 (chr2:176054914-176060967);Frequency=0.35
chr2	CG	SV	176054920	176055413	86	+	.	ID=3226;Type=deletion;Left=chr2:176054920-176055413;Right=chr2:176060973-176061552
chr2	CG	SV	176060973	176061552	86	+	.	ID=3226;Type=deletion;Left=chr2:176054920-176055413;Right=chr2:176060973-176061552
chr2	CG	SV	176973891	176980809	68	.	.	ID=3225;Type=deletion;Left=chr2:176973891-176974246+;Right=chr2:176980290-176980809+;Distance=6399;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66861570 (chr2:176973891-176980290);Frequency=0.82
chr2	CG	SV	176973891	176974246	68	+	.	ID=3225;Type=deletion;Left=chr2:176973891-176974246;Right=chr2:176980290-176980809
chr2	CG	SV	176980290	176980809	68	+	.	ID=3225;Type=deletion;Left=chr2:176973891-176974246;Right=chr2:176980290-176980809
chr2	CG	SV	177081925	177094907	40	.	.	ID=4012;Type=probable-inversion;Left=chr2:177081925-177082472+;Right=chr2:177094516-177094907-;Distance=12982;DiscordantMatePairAlignments=40;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	177081925	177082472	40	+	.	ID=4012;Type=probable-inversion;Left=chr2:177081925-177082472;Right=chr2:177094516-177094907
chr2	CG	SV	177094516	177094907	40	+	.	ID=4012;Type=probable-inversion;Left=chr2:177081925-177082472;Right=chr2:177094516-177094907
chr2	CG	SV	177995883	177996911	15	.	.	ID=3224;Type=deletion;Left=chr2:177995883-177996410+;Right=chr2:177996307-177996911+;Distance=424;DiscordantMatePairAlignments=15;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_003659:+;RightGenes=NM_003659:+;XRef=rs67480529 (chr2:177995883-177996297);Frequency=1.00
chr2	CG	SV	177995883	177996410	15	+	.	ID=3224;Type=deletion;Left=chr2:177995883-177996410;Right=chr2:177996307-177996911
chr2	CG	SV	177996307	177996911	15	+	.	ID=3224;Type=deletion;Left=chr2:177995883-177996410;Right=chr2:177996307-177996911
chr2	CG	SV	182273509	182274330	10	.	.	ID=3221;Type=deletion;Left=chr2:182273509-182274083+;Right=chr2:182273837-182274330+;Distance=328;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67398526 (chr2:182273485-182273813);Frequency=1.00
chr2	CG	SV	182273509	182274083	10	+	.	ID=3221;Type=deletion;Left=chr2:182273509-182274083;Right=chr2:182273837-182274330
chr2	CG	SV	182273837	182274330	10	+	.	ID=3221;Type=deletion;Left=chr2:182273509-182274083;Right=chr2:182273837-182274330
chr2	CG	SV	182565161	182566286	39	.	.	ID=3220;Type=deletion;Left=chr2:182565161-182565670+;Right=chr2:182565844-182566286+;Distance=683;DiscordantMatePairAlignments=39;LeftRepeat=L3b:LINE:CR1;RightRepeat=;LeftGenes=NM_001080545:+;RightGenes=NM_001080545:+;XRef=;Frequency=0.47
chr2	CG	SV	182565161	182565670	39	+	.	ID=3220;Type=deletion;Left=chr2:182565161-182565670;Right=chr2:182565844-182566286
chr2	CG	SV	182565844	182566286	39	+	.	ID=3220;Type=deletion;Left=chr2:182565161-182565670;Right=chr2:182565844-182566286
chr2	CG	SV	188827864	188829628	36	.	.	ID=3218;Type=deletion;Left=chr2:188827864-188828297+;Right=chr2:188829227-188829628+;Distance=1363;DiscordantMatePairAlignments=36;LeftRepeat=L1ME1:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr2	CG	SV	188827864	188828297	36	+	.	ID=3218;Type=deletion;Left=chr2:188827864-188828297;Right=chr2:188829227-188829628
chr2	CG	SV	188829227	188829628	36	+	.	ID=3218;Type=deletion;Left=chr2:188827864-188828297;Right=chr2:188829227-188829628
chr2	CG	SV	194397747	194407310	13	.	.	ID=3217;Type=deletion;Left=chr2:194397747-194398172+;Right=chr2:194407011-194407310+;Distance=9264;DiscordantMatePairAlignments=13;LeftRepeat=HAL1:LINE:L1;RightRepeat=L1PA5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67932712 (chr2:194397747-194407011);Frequency=0.88
chr2	CG	SV	194397747	194398172	13	+	.	ID=3217;Type=deletion;Left=chr2:194397747-194398172;Right=chr2:194407011-194407310
chr2	CG	SV	194407011	194407310	13	+	.	ID=3217;Type=deletion;Left=chr2:194397747-194398172;Right=chr2:194407011-194407310
chr2	CG	SV	201854903	201858370	96	.	.	ID=3213;Type=deletion;Left=chr2:201854903-201855527+;Right=chr2:201857695-201858370+;Distance=2792;DiscordantMatePairAlignments=96;LeftRepeat=SVA:Other:Other;RightRepeat=;LeftGenes=NM_001080124:+;NM_001080125:+;NM_001228:+;NM_033355:+;NM_033356:+;RightGenes=NM_001080124:+;NM_001080125:+;NM_001228:+;NM_033355:+;NM_033356:+;XRef=rs66663250 (chr2:201854893-201857685);Frequency=0.71
chr2	CG	SV	201854903	201855527	96	+	.	ID=3213;Type=deletion;Left=chr2:201854903-201855527;Right=chr2:201857695-201858370
chr2	CG	SV	201857695	201858370	96	+	.	ID=3213;Type=deletion;Left=chr2:201854903-201855527;Right=chr2:201857695-201858370
chr2	CG	SV	208798529	208806191	31	.	.	ID=3208;Type=deletion;Left=chr2:208798529-208799052+;Right=chr2:208805686-208806191+;Distance=7157;DiscordantMatePairAlignments=31;LeftRepeat=AluSq:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	208798529	208799052	31	+	.	ID=3208;Type=deletion;Left=chr2:208798529-208799052;Right=chr2:208805686-208806191
chr2	CG	SV	208805686	208806191	31	+	.	ID=3208;Type=deletion;Left=chr2:208798529-208799052;Right=chr2:208805686-208806191
chr2	CG	SV	216798177	216801024	42	.	.	ID=3206;Type=deletion;Left=chr2:216798177-216798732+;Right=chr2:216800745-216801024+;Distance=2568;DiscordantMatePairAlignments=42;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67871446 (chr2:216798175-216800743);Frequency=1.00
chr2	CG	SV	216798177	216798732	42	+	.	ID=3206;Type=deletion;Left=chr2:216798177-216798732;Right=chr2:216800745-216801024
chr2	CG	SV	216800745	216801024	42	+	.	ID=3206;Type=deletion;Left=chr2:216798177-216798732;Right=chr2:216800745-216801024
chr2	CG	SV	217715924	217716219	22	-	.	ID=1158;Type=interchromosomal;Left=chr2:217715924-217716219-;Right=chr17:46221423-46221823-;Distance=;DiscordantMatePairAlignments=22;LeftRepeat=L1M5:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr17	CG	SV	46221423	46221823	22	-	.	ID=1158;Type=interchromosomal;Left=chr2:217715924-217716219-;Right=chr17:46221423-46221823-;Distance=;DiscordantMatePairAlignments=22;LeftRepeat=L1M5:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	223468435	223471469	69	.	.	ID=3202;Type=deletion;Left=chr2:223468435-223468920+;Right=chr2:223470928-223471469+;Distance=2493;DiscordantMatePairAlignments=69;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_004457:+;NM_203372:+;RightGenes=NM_004457:+;NM_203372:+;XRef=rs67796571 (chr2:223468435-223470928);Frequency=0.94
chr2	CG	SV	223468435	223468920	69	+	.	ID=3202;Type=deletion;Left=chr2:223468435-223468920;Right=chr2:223470928-223471469
chr2	CG	SV	223470928	223471469	69	+	.	ID=3202;Type=deletion;Left=chr2:223468435-223468920;Right=chr2:223470928-223471469
chr2	CG	SV	225747827	225749086	43	.	.	ID=3201;Type=deletion;Left=chr2:225747827-225748359+;Right=chr2:225748304-225749086+;Distance=477;DiscordantMatePairAlignments=43;LeftRepeat=Self chain;RightRepeat=Alu:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	225747827	225748359	43	+	.	ID=3201;Type=deletion;Left=chr2:225747827-225748359;Right=chr2:225748304-225749086
chr2	CG	SV	225748304	225749086	43	+	.	ID=3201;Type=deletion;Left=chr2:225747827-225748359;Right=chr2:225748304-225749086
chr2	CG	SV	237596582	237612278	54	.	.	ID=3198;Type=deletion;Left=chr2:237596582-237597227+;Right=chr2:237611957-237612278+;Distance=15375;DiscordantMatePairAlignments=54;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	237596582	237597227	54	+	.	ID=3198;Type=deletion;Left=chr2:237596582-237597227;Right=chr2:237611957-237612278
chr2	CG	SV	237611957	237612278	54	+	.	ID=3198;Type=deletion;Left=chr2:237596582-237597227;Right=chr2:237611957-237612278
chr2	CG	SV	240630241	240631148	19	.	.	ID=3196;Type=deletion;Left=chr2:240630241-240630789+;Right=chr2:240630857-240631148+;Distance=616;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;Tandem period 14;Tandem period 56;Tandem period 84;RightRepeat=Self chain;Tandem period 14;Tandem period 56;Tandem period 84;LeftGenes=NM_001080835:-;RightGenes=NM_001080835:-;XRef=;Frequency=0.59
chr2	CG	SV	240630241	240630789	19	+	.	ID=3196;Type=deletion;Left=chr2:240630241-240630789;Right=chr2:240630857-240631148
chr2	CG	SV	240630857	240631148	19	+	.	ID=3196;Type=deletion;Left=chr2:240630241-240630789;Right=chr2:240630857-240631148
chr2	CG	SV	242154776	242156244	39	.	.	ID=3194;Type=deletion;Left=chr2:242154776-242155216+;Right=chr2:242156007-242156244+;Distance=1231;DiscordantMatePairAlignments=39;LeftRepeat=Self chain;RightRepeat=L1MB5:LINE:L1;Self chain;LeftGenes=NM_032515:+;RightGenes=NM_032515:+;XRef=rs72482950 (chr2:242154674-242155799);Frequency=0.45
chr2	CG	SV	242154776	242155216	39	+	.	ID=3194;Type=deletion;Left=chr2:242154776-242155216;Right=chr2:242156007-242156244
chr2	CG	SV	242156007	242156244	39	+	.	ID=3194;Type=deletion;Left=chr2:242154776-242155216;Right=chr2:242156007-242156244
chr3	CG	SV	8300639	8302234	69	.	.	ID=3189;Type=deletion;Left=chr3:8300639-8301326+;Right=chr3:8301812-8302234+;Distance=1173;DiscordantMatePairAlignments=69;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71052654 (chr3:8300639-8301812);Frequency=0.59
chr3	CG	SV	8300639	8301326	69	+	.	ID=3189;Type=deletion;Left=chr3:8300639-8301326;Right=chr3:8301812-8302234
chr3	CG	SV	8301812	8302234	69	+	.	ID=3189;Type=deletion;Left=chr3:8300639-8301326;Right=chr3:8301812-8302234
chr3	CG	SV	8781351	9011298	70	.	.	ID=3187;Type=deletion;Left=chr3:8781351-8781875+;Right=chr3:9010819-9011298+;Distance=229468;DiscordantMatePairAlignments=70;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_000916:-;RightGenes=NM_001033117:-;NM_014850:-;XRef=;Frequency=0.00
chr3	CG	SV	8781351	8781875	70	+	.	ID=3187;Type=deletion;Left=chr3:8781351-8781875;Right=chr3:9010819-9011298
chr3	CG	SV	9010819	9011298	70	+	.	ID=3187;Type=deletion;Left=chr3:8781351-8781875;Right=chr3:9010819-9011298
chr3	CG	SV	10372475	10373528	34	.	.	ID=3186;Type=deletion;Left=chr3:10372475-10372938+;Right=chr3:10372839-10373528+;Distance=364;DiscordantMatePairAlignments=34;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TG;LeftGenes=NM_001001331:-;NM_001683:-;RightGenes=NM_001001331:-;NM_001683:-;XRef=;Frequency=1.00
chr3	CG	SV	10372475	10372938	34	+	.	ID=3186;Type=deletion;Left=chr3:10372475-10372938;Right=chr3:10372839-10373528
chr3	CG	SV	10372839	10373528	34	+	.	ID=3186;Type=deletion;Left=chr3:10372475-10372938;Right=chr3:10372839-10373528
chr3	CG	SV	15820177	15822159	19	.	.	ID=3184;Type=deletion;Left=chr3:15820177-15820717+;Right=chr3:15821743-15822159+;Distance=1566;DiscordantMatePairAlignments=19;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_015199:-;RightGenes=NM_015199:-;XRef=;Frequency=0.18
chr3	CG	SV	15820177	15820717	19	+	.	ID=3184;Type=deletion;Left=chr3:15820177-15820717;Right=chr3:15821743-15822159
chr3	CG	SV	15821743	15822159	19	+	.	ID=3184;Type=deletion;Left=chr3:15820177-15820717;Right=chr3:15821743-15822159
chr3	CG	SV	22067365	22073418	54	.	.	ID=3180;Type=deletion;Left=chr3:22067365-22067816+;Right=chr3:22072813-22073418+;Distance=5448;DiscordantMatePairAlignments=54;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66720172 (chr3:22067351-22072799);Frequency=0.88
chr3	CG	SV	22067365	22067816	54	+	.	ID=3180;Type=deletion;Left=chr3:22067365-22067816;Right=chr3:22072813-22073418
chr3	CG	SV	22072813	22073418	54	+	.	ID=3180;Type=deletion;Left=chr3:22067365-22067816;Right=chr3:22072813-22073418
chr3	CG	SV	25005891	25007807	68	.	.	ID=3178;Type=deletion;Left=chr3:25005891-25006233+;Right=chr3:25007253-25007807+;Distance=1362;DiscordantMatePairAlignments=68;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=L1ME3B:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72404999 (chr3:25005891-25007246);Frequency=0.65
chr3	CG	SV	25005891	25006233	68	+	.	ID=3178;Type=deletion;Left=chr3:25005891-25006233;Right=chr3:25007253-25007807
chr3	CG	SV	25007253	25007807	68	+	.	ID=3178;Type=deletion;Left=chr3:25005891-25006233;Right=chr3:25007253-25007807
chr3	CG	SV	26425974	26427857	94	.	.	ID=3177;Type=deletion;Left=chr3:26425974-26426522+;Right=chr3:26427303-26427857+;Distance=1329;DiscordantMatePairAlignments=94;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66805914 (chr3:26425974-26427303);Frequency=0.94
chr3	CG	SV	26425974	26426522	94	+	.	ID=3177;Type=deletion;Left=chr3:26425974-26426522;Right=chr3:26427303-26427857
chr3	CG	SV	26427303	26427857	94	+	.	ID=3177;Type=deletion;Left=chr3:26425974-26426522;Right=chr3:26427303-26427857
chr3	CG	SV	32077056	32083364	86	.	.	ID=3176;Type=deletion;Left=chr3:32077056-32077520+;Right=chr3:32082889-32083364+;Distance=5833;DiscordantMatePairAlignments=86;LeftRepeat=;RightRepeat=MER31B:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs71946771 (chr3:32077054-32082887);Frequency=0.94
chr3	CG	SV	32077056	32077520	86	+	.	ID=3176;Type=deletion;Left=chr3:32077056-32077520;Right=chr3:32082889-32083364
chr3	CG	SV	32082889	32083364	86	+	.	ID=3176;Type=deletion;Left=chr3:32077056-32077520;Right=chr3:32082889-32083364
chr3	CG	SV	32781814	32783429	34	.	.	ID=3174;Type=deletion;Left=chr3:32781814-32782447+;Right=chr3:32783129-32783429+;Distance=1315;DiscordantMatePairAlignments=34;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_015442:+;RightGenes=NM_015442:+;XRef=rs72274862 (chr3:32781540-32782847);Frequency=0.94
chr3	CG	SV	32781814	32782447	34	+	.	ID=3174;Type=deletion;Left=chr3:32781814-32782447;Right=chr3:32783129-32783429
chr3	CG	SV	32783129	32783429	34	+	.	ID=3174;Type=deletion;Left=chr3:32781814-32782447;Right=chr3:32783129-32783429
chr3	CG	SV	33528211	33529604	30	.	.	ID=3173;Type=deletion;Left=chr3:33528211-33528706+;Right=chr3:33529097-33529604+;Distance=886;DiscordantMatePairAlignments=30;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_015097:-;RightGenes=NM_015097:-;XRef=;Frequency=0.82
chr3	CG	SV	33528211	33528706	30	+	.	ID=3173;Type=deletion;Left=chr3:33528211-33528706;Right=chr3:33529097-33529604
chr3	CG	SV	33529097	33529604	30	+	.	ID=3173;Type=deletion;Left=chr3:33528211-33528706;Right=chr3:33529097-33529604
chr3	CG	SV	33697293	33697890	11	.	.	ID=1325;Type=tandem-duplication;Left=chr3:33697293-33697589-;Right=chr3:33697632-33697890-;Distance=301;DiscordantMatePairAlignments=11;LeftRepeat=AluSg:SINE:Alu;RightRepeat=;LeftGenes=NM_015097:-;RightGenes=NM_015097:-;XRef=;Frequency=0.47
chr3	CG	SV	33697293	33697589	11	-	.	ID=1325;Type=tandem-duplication;Left=chr3:33697293-33697589;Right=chr3:33697632-33697890
chr3	CG	SV	33697632	33697890	11	-	.	ID=1325;Type=tandem-duplication;Left=chr3:33697293-33697589;Right=chr3:33697632-33697890
chr3	CG	SV	42813377	42816459	44	.	.	ID=3171;Type=deletion;Left=chr3:42813377-42813861+;Right=chr3:42815831-42816459+;Distance=2454;DiscordantMatePairAlignments=44;LeftRepeat=;RightRepeat=LTR8:LTR:ERV1;LeftGenes=NM_001099668:-;NM_001099669:-;NM_014056:-;RightGenes=NM_001099668:-;NM_001099669:-;NM_014056:-;XRef=rs71052669 (chr3:42813377-42815831);Frequency=1.00
chr3	CG	SV	42813377	42813861	44	+	.	ID=3171;Type=deletion;Left=chr3:42813377-42813861;Right=chr3:42815831-42816459
chr3	CG	SV	42815831	42816459	44	+	.	ID=3171;Type=deletion;Left=chr3:42813377-42813861;Right=chr3:42815831-42816459
chr3	CG	SV	44715236	44717505	53	.	.	ID=515;Type=distal-duplication;Left=chr3:44715236-44715994-;Right=chr3:44717289-44717505+;Distance=1295;DiscordantMatePairAlignments=53;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	44715236	44715994	53	-	.	ID=515;Type=distal-duplication;Left=chr3:44715236-44715994;Right=chr3:44717289-44717505
chr3	CG	SV	44717289	44717505	53	-	.	ID=515;Type=distal-duplication;Left=chr3:44715236-44715994;Right=chr3:44717289-44717505
chr3	CG	SV	44716161	44717125	18	.	.	ID=4008;Type=distal-duplication;Left=chr3:44716161-44716484+;Right=chr3:44716673-44717125-;Distance=964;DiscordantMatePairAlignments=18;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	44716161	44716484	18	+	.	ID=4008;Type=distal-duplication;Left=chr3:44716161-44716484;Right=chr3:44716673-44717125
chr3	CG	SV	44716673	44717125	18	+	.	ID=4008;Type=distal-duplication;Left=chr3:44716161-44716484;Right=chr3:44716673-44717125
chr3	CG	SV	45584915	45585781	33	.	.	ID=3169;Type=deletion;Left=chr3:45584915-45585460+;Right=chr3:45585331-45585781+;Distance=416;DiscordantMatePairAlignments=33;LeftRepeat=L1PA14:LINE:L1;RightRepeat=L1PA14:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71052671 (chr3:45584851-45585267);Frequency=1.00
chr3	CG	SV	45584915	45585460	33	+	.	ID=3169;Type=deletion;Left=chr3:45584915-45585460;Right=chr3:45585331-45585781
chr3	CG	SV	45585331	45585781	33	+	.	ID=3169;Type=deletion;Left=chr3:45584915-45585460;Right=chr3:45585331-45585781
chr3	CG	SV	47465673	47468980	64	.	.	ID=3168;Type=deletion;Left=chr3:47465673-47466190+;Right=chr3:47468446-47468980+;Distance=2773;DiscordantMatePairAlignments=64;LeftRepeat=L1MD2:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=NM_012235:-;RightGenes=NM_012235:-;XRef=rs71996089 (chr3:47465671-47468444);Frequency=0.47
chr3	CG	SV	47465673	47466190	64	+	.	ID=3168;Type=deletion;Left=chr3:47465673-47466190;Right=chr3:47468446-47468980
chr3	CG	SV	47468446	47468980	64	+	.	ID=3168;Type=deletion;Left=chr3:47465673-47466190;Right=chr3:47468446-47468980
chr3	CG	SV	49469291	49470044	16	.	.	ID=3166;Type=deletion;Left=chr3:49469291-49469853+;Right=chr3:49469620-49470044+;Distance=329;DiscordantMatePairAlignments=16;LeftRepeat=MIRb:SINE:MIR;Tandem T;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs6147818 (chr3:49469280-49469609);Frequency=1.00
chr3	CG	SV	49469291	49469853	16	+	.	ID=3166;Type=deletion;Left=chr3:49469291-49469853;Right=chr3:49469620-49470044
chr3	CG	SV	49469620	49470044	16	+	.	ID=3166;Type=deletion;Left=chr3:49469291-49469853;Right=chr3:49469620-49470044
chr3	CG	SV	63109897	63110798	15	.	.	ID=3163;Type=deletion;Left=chr3:63109897-63110405+;Right=chr3:63110350-63110798+;Distance=453;DiscordantMatePairAlignments=15;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs68090124 (chr3:63109897-63110350);Frequency=0.00
chr3	CG	SV	63109897	63110405	15	+	.	ID=3163;Type=deletion;Left=chr3:63109897-63110405;Right=chr3:63110350-63110798
chr3	CG	SV	63110350	63110798	15	+	.	ID=3163;Type=deletion;Left=chr3:63109897-63110405;Right=chr3:63110350-63110798
chr3	CG	SV	65092952	65095165	49	.	.	ID=3162;Type=deletion;Left=chr3:65092952-65093599+;Right=chr3:65094824-65095165+;Distance=1872;DiscordantMatePairAlignments=49;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr3	CG	SV	65092952	65093599	49	+	.	ID=3162;Type=deletion;Left=chr3:65092952-65093599;Right=chr3:65094824-65095165
chr3	CG	SV	65094824	65095165	49	+	.	ID=3162;Type=deletion;Left=chr3:65092952-65093599;Right=chr3:65094824-65095165
chr3	CG	SV	66034378	66035576	36	.	.	ID=1321;Type=tandem-duplication;Left=chr3:66034378-66034969-;Right=chr3:66035269-66035576-;Distance=607;DiscordantMatePairAlignments=36;LeftRepeat=Alu:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr3	CG	SV	66034378	66034969	36	-	.	ID=1321;Type=tandem-duplication;Left=chr3:66034378-66034969;Right=chr3:66035269-66035576
chr3	CG	SV	66035269	66035576	36	-	.	ID=1321;Type=tandem-duplication;Left=chr3:66034378-66034969;Right=chr3:66035269-66035576
chr3	CG	SV	67576388	67579978	26	.	.	ID=3161;Type=deletion;Left=chr3:67576388-67576899+;Right=chr3:67579492-67579978+;Distance=3104;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_003848:-;RightGenes=NM_003848:-;XRef=rs71052690 (chr3:67576398-67579502);Frequency=1.00
chr3	CG	SV	67576388	67576899	26	+	.	ID=3161;Type=deletion;Left=chr3:67576388-67576899;Right=chr3:67579492-67579978
chr3	CG	SV	67579492	67579978	26	+	.	ID=3161;Type=deletion;Left=chr3:67576388-67576899;Right=chr3:67579492-67579978
chr3	CG	SV	68822380	68830995	24	.	.	ID=3160;Type=deletion;Left=chr3:68822380-68822974+;Right=chr3:68830555-68830995+;Distance=8175;DiscordantMatePairAlignments=24;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67150556 (chr3:68822377-68830553);Frequency=0.88
chr3	CG	SV	68822380	68822974	24	+	.	ID=3160;Type=deletion;Left=chr3:68822380-68822974;Right=chr3:68830555-68830995
chr3	CG	SV	68830555	68830995	24	+	.	ID=3160;Type=deletion;Left=chr3:68822380-68822974;Right=chr3:68830555-68830995
chr3	CG	SV	75359579	75361899	57	.	.	ID=3158;Type=deletion;Left=chr3:75359579-75360105+;Right=chr3:75361608-75361899+;Distance=2029;DiscordantMatePairAlignments=57;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72396976 (chr3:75359579-75361608);Frequency=1.00
chr3	CG	SV	75359579	75360105	57	+	.	ID=3158;Type=deletion;Left=chr3:75359579-75360105;Right=chr3:75361608-75361899
chr3	CG	SV	75361608	75361899	57	+	.	ID=3158;Type=deletion;Left=chr3:75359579-75360105;Right=chr3:75361608-75361899
chr3	CG	SV	75779122	75780131	21	.	.	ID=3156;Type=deletion;Left=chr3:75779122-75779645+;Right=chr3:75779615-75780131+;Distance=493;DiscordantMatePairAlignments=21;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	75779122	75779645	21	+	.	ID=3156;Type=deletion;Left=chr3:75779122-75779645;Right=chr3:75779615-75780131
chr3	CG	SV	75779615	75780131	21	+	.	ID=3156;Type=deletion;Left=chr3:75779122-75779645;Right=chr3:75779615-75780131
chr3	CG	SV	75801870	75802698	10	+	.	ID=3703;Type=complex;Left=chr3:75801870-75802698+;Right=chr18:102200-102542-;Distance=;DiscordantMatePairAlignments=10;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	102200	102542	10	+	.	ID=3703;Type=complex;Left=chr3:75801870-75802698+;Right=chr18:102200-102542-;Distance=;DiscordantMatePairAlignments=10;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	76097218	76097427	23	.	.	ID=1319;Type=tandem-duplication;Left=chr3:76097218-76097320-;Right=chr3:76097289-76097427-;Distance=107;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	76097218	76097320	23	-	.	ID=1319;Type=tandem-duplication;Left=chr3:76097218-76097320;Right=chr3:76097289-76097427
chr3	CG	SV	76097289	76097427	23	-	.	ID=1319;Type=tandem-duplication;Left=chr3:76097218-76097320;Right=chr3:76097289-76097427
chr3	CG	SV	76901816	76969924	87	.	.	ID=3154;Type=deletion;Left=chr3:76901816-76902250+;Right=chr3:76969495-76969924+;Distance=67679;DiscordantMatePairAlignments=87;LeftRepeat=;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	76901816	76902250	87	+	.	ID=3154;Type=deletion;Left=chr3:76901816-76902250;Right=chr3:76969495-76969924
chr3	CG	SV	76969495	76969924	87	+	.	ID=3154;Type=deletion;Left=chr3:76901816-76902250;Right=chr3:76969495-76969924
chr3	CG	SV	81008004	81009907	76	.	.	ID=3152;Type=deletion;Left=chr3:81008004-81008420+;Right=chr3:81009297-81009907+;Distance=1293;DiscordantMatePairAlignments=76;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71052702 (chr3:81008004-81009297);Frequency=0.88
chr3	CG	SV	81008004	81008420	76	+	.	ID=3152;Type=deletion;Left=chr3:81008004-81008420;Right=chr3:81009297-81009907
chr3	CG	SV	81009297	81009907	76	+	.	ID=3152;Type=deletion;Left=chr3:81008004-81008420;Right=chr3:81009297-81009907
chr3	CG	SV	83935812	83938527	45	.	.	ID=3150;Type=deletion;Left=chr3:83935812-83936415+;Right=chr3:83938046-83938527+;Distance=2234;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68176635 (chr3:83935818-83938052);Frequency=0.94
chr3	CG	SV	83935812	83936415	45	+	.	ID=3150;Type=deletion;Left=chr3:83935812-83936415;Right=chr3:83938046-83938527
chr3	CG	SV	83938046	83938527	45	+	.	ID=3150;Type=deletion;Left=chr3:83935812-83936415;Right=chr3:83938046-83938527
chr3	CG	SV	84187632	84190519	55	.	.	ID=3149;Type=deletion;Left=chr3:84187632-84188144+;Right=chr3:84190074-84190519+;Distance=2442;DiscordantMatePairAlignments=55;LeftRepeat=L1MC1:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr3	CG	SV	84187632	84188144	55	+	.	ID=3149;Type=deletion;Left=chr3:84187632-84188144;Right=chr3:84190074-84190519
chr3	CG	SV	84190074	84190519	55	+	.	ID=3149;Type=deletion;Left=chr3:84187632-84188144;Right=chr3:84190074-84190519
chr3	CG	SV	101111472	101112832	168	.	.	ID=3143;Type=deletion;Left=chr3:101111472-101111994+;Right=chr3:101112320-101112832+;Distance=848;DiscordantMatePairAlignments=168;LeftRepeat=;RightRepeat=;LeftGenes=NM_001042459:-;NM_032359:+;NM_182909:-;RightGenes=NM_001042459:-;NM_032359:+;NM_182909:-;XRef=rs68054323 (chr3:101111472-101112320);Frequency=0.47
chr3	CG	SV	101111472	101111994	168	+	.	ID=3143;Type=deletion;Left=chr3:101111472-101111994;Right=chr3:101112320-101112832
chr3	CG	SV	101112320	101112832	168	+	.	ID=3143;Type=deletion;Left=chr3:101111472-101111994;Right=chr3:101112320-101112832
chr3	CG	SV	103766477	103767282	10	.	.	ID=3141;Type=deletion;Left=chr3:103766477-103767006+;Right=chr3:103766815-103767282+;Distance=338;DiscordantMatePairAlignments=10;LeftRepeat=Tandem T;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs10524232 (chr3:103766464-103766802);Frequency=0.76
chr3	CG	SV	103766477	103767006	10	+	.	ID=3141;Type=deletion;Left=chr3:103766477-103767006;Right=chr3:103766815-103767282
chr3	CG	SV	103766815	103767282	10	+	.	ID=3141;Type=deletion;Left=chr3:103766477-103767006;Right=chr3:103766815-103767282
chr3	CG	SV	105760890	105762234	13	.	.	ID=3140;Type=deletion;Left=chr3:105760890-105761224+;Right=chr3:105761737-105762234+;Distance=847;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67066218 (chr3:105760889-105761736);Frequency=0.41
chr3	CG	SV	105760890	105761224	13	+	.	ID=3140;Type=deletion;Left=chr3:105760890-105761224;Right=chr3:105761737-105762234
chr3	CG	SV	105761737	105762234	13	+	.	ID=3140;Type=deletion;Left=chr3:105760890-105761224;Right=chr3:105761737-105762234
chr3	CG	SV	106558358	106561166	43	.	.	ID=3139;Type=deletion;Left=chr3:106558358-106558855+;Right=chr3:106560683-106561166+;Distance=2325;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr3	CG	SV	106558358	106558855	43	+	.	ID=3139;Type=deletion;Left=chr3:106558358-106558855;Right=chr3:106560683-106561166
chr3	CG	SV	106560683	106561166	43	+	.	ID=3139;Type=deletion;Left=chr3:106558358-106558855;Right=chr3:106560683-106561166
chr3	CG	SV	106788697	106794309	14	.	.	ID=3138;Type=deletion;Left=chr3:106788697-106789187+;Right=chr3:106793732-106794309+;Distance=5035;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr3	CG	SV	106788697	106789187	14	+	.	ID=3138;Type=deletion;Left=chr3:106788697-106789187;Right=chr3:106793732-106794309
chr3	CG	SV	106793732	106794309	14	+	.	ID=3138;Type=deletion;Left=chr3:106788697-106789187;Right=chr3:106793732-106794309
chr3	CG	SV	107311554	107315099	36	.	.	ID=3137;Type=deletion;Left=chr3:107311554-107312134+;Right=chr3:107314321-107315099+;Distance=2767;DiscordantMatePairAlignments=36;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr3	CG	SV	107311554	107312134	36	+	.	ID=3137;Type=deletion;Left=chr3:107311554-107312134;Right=chr3:107314321-107315099
chr3	CG	SV	107314321	107315099	36	+	.	ID=3137;Type=deletion;Left=chr3:107311554-107312134;Right=chr3:107314321-107315099
chr3	CG	SV	118147530	118346258	26	.	.	ID=3132;Type=deletion;Left=chr3:118147530-118147972+;Right=chr3:118345751-118346258+;Distance=198221;DiscordantMatePairAlignments=26;LeftRepeat=FLAM_C:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	118147530	118147972	26	+	.	ID=3132;Type=deletion;Left=chr3:118147530-118147972;Right=chr3:118345751-118346258
chr3	CG	SV	118345751	118346258	26	+	.	ID=3132;Type=deletion;Left=chr3:118147530-118147972;Right=chr3:118345751-118346258
chr3	CG	SV	121376675	121377493	28	.	.	ID=3129;Type=complex;Left=chr3:121376675-121377212+;Right=chr3:121377135-121377493+;Distance=460;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=NM_001168271:-;NM_153002:-;RightGenes=NM_001168271:-;NM_153002:-;XRef=rs67399158 (chr3:121376673-121377133);Frequency=1.00
chr3	CG	SV	121376675	121377212	28	+	.	ID=3129;Type=complex;Left=chr3:121376675-121377212;Right=chr3:121377135-121377493
chr3	CG	SV	121377135	121377493	28	+	.	ID=3129;Type=complex;Left=chr3:121376675-121377212;Right=chr3:121377135-121377493
chr3	CG	SV	121376675	121377667	32	.	.	ID=3130;Type=complex;Left=chr3:121376675-121377119+;Right=chr3:121377135-121377667+;Distance=460;DiscordantMatePairAlignments=32;LeftRepeat=;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=NM_001168271:-;NM_153002:-;RightGenes=NM_001168271:-;NM_153002:-;XRef=rs67310162 (chr3:121376675-121377135);Frequency=1.00
chr3	CG	SV	121376675	121377119	32	+	.	ID=3130;Type=complex;Left=chr3:121376675-121377119;Right=chr3:121377135-121377667
chr3	CG	SV	121377135	121377667	32	+	.	ID=3130;Type=complex;Left=chr3:121376675-121377119;Right=chr3:121377135-121377667
chr3	CG	SV	126372743	126374136	32	.	.	ID=3126;Type=deletion;Left=chr3:126372743-126373038+;Right=chr3:126373513-126374136+;Distance=770;DiscordantMatePairAlignments=32;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_024628:-;RightGenes=NM_024628:-;XRef=rs66464009 (chr3:126372743-126373513);Frequency=1.00
chr3	CG	SV	126372743	126373038	32	+	.	ID=3126;Type=deletion;Left=chr3:126372743-126373038;Right=chr3:126373513-126374136
chr3	CG	SV	126373513	126374136	32	+	.	ID=3126;Type=deletion;Left=chr3:126372743-126373038;Right=chr3:126373513-126374136
chr3	CG	SV	126418990	126420534	58	.	.	ID=3125;Type=deletion;Left=chr3:126418990-126419225+;Right=chr3:126419859-126420534+;Distance=869;DiscordantMatePairAlignments=58;LeftRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72308239 (chr3:126418985-126419853);Frequency=0.82
chr3	CG	SV	126418990	126419225	58	+	.	ID=3125;Type=deletion;Left=chr3:126418990-126419225;Right=chr3:126419859-126420534
chr3	CG	SV	126419859	126420534	58	+	.	ID=3125;Type=deletion;Left=chr3:126418990-126419225;Right=chr3:126419859-126420534
chr3	CG	SV	131830267	131836302	36	.	.	ID=3122;Type=deletion;Left=chr3:131830267-131830802+;Right=chr3:131835809-131836302+;Distance=5542;DiscordantMatePairAlignments=36;LeftRepeat=;RightRepeat=;LeftGenes=NM_001102608:+;RightGenes=NM_001102608:+;XRef=rs72337912 (chr3:131830267-131835809);Frequency=0.35
chr3	CG	SV	131830267	131830802	36	+	.	ID=3122;Type=deletion;Left=chr3:131830267-131830802;Right=chr3:131835809-131836302
chr3	CG	SV	131835809	131836302	36	+	.	ID=3122;Type=deletion;Left=chr3:131830267-131830802;Right=chr3:131835809-131836302
chr3	CG	SV	133190943	133196531	42	.	.	ID=3121;Type=deletion;Left=chr3:133190943-133191310+;Right=chr3:133196074-133196531+;Distance=5131;DiscordantMatePairAlignments=42;LeftRepeat=;RightRepeat=;LeftGenes=NM_130808:-;RightGenes=NM_130808:-;XRef=;Frequency=0.59
chr3	CG	SV	133190943	133191310	42	+	.	ID=3121;Type=deletion;Left=chr3:133190943-133191310;Right=chr3:133196074-133196531
chr3	CG	SV	133196074	133196531	42	+	.	ID=3121;Type=deletion;Left=chr3:133190943-133191310;Right=chr3:133196074-133196531
chr3	CG	SV	133471886	133478179	22	.	.	ID=3120;Type=deletion;Left=chr3:133471886-133472306+;Right=chr3:133477843-133478179+;Distance=5957;DiscordantMatePairAlignments=22;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67599226 (chr3:133471815-133477774);Frequency=0.41
chr3	CG	SV	133471886	133472306	22	+	.	ID=3120;Type=deletion;Left=chr3:133471886-133472306;Right=chr3:133477843-133478179
chr3	CG	SV	133477843	133478179	22	+	.	ID=3120;Type=deletion;Left=chr3:133471886-133472306;Right=chr3:133477843-133478179
chr3	CG	SV	134986465	134988272	90	.	.	ID=3119;Type=deletion;Left=chr3:134986465-134986896+;Right=chr3:134987781-134988272+;Distance=1316;DiscordantMatePairAlignments=90;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71056134 (chr3:134986472-134987788);Frequency=0.53
chr3	CG	SV	134986465	134986896	90	+	.	ID=3119;Type=deletion;Left=chr3:134986465-134986896;Right=chr3:134987781-134988272
chr3	CG	SV	134987781	134988272	90	+	.	ID=3119;Type=deletion;Left=chr3:134986465-134986896;Right=chr3:134987781-134988272
chr3	CG	SV	136156600	136157805	126	.	.	ID=3118;Type=deletion;Left=chr3:136156600-136157250+;Right=chr3:136157253-136157805+;Distance=653;DiscordantMatePairAlignments=126;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=NM_004441:+;RightGenes=NM_004441:+;XRef=rs66977021 (chr3:136156606-136157259);Frequency=0.82
chr3	CG	SV	136156600	136157250	126	+	.	ID=3118;Type=deletion;Left=chr3:136156600-136157250;Right=chr3:136157253-136157805
chr3	CG	SV	136157253	136157805	126	+	.	ID=3118;Type=deletion;Left=chr3:136156600-136157250;Right=chr3:136157253-136157805
chr3	CG	SV	141153208	141157144	10	.	.	ID=1318;Type=tandem-duplication;Left=chr3:141153208-141153287-;Right=chr3:141156691-141157144-;Distance=3857;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=NM_022131:+;RightGenes=NM_022131:+;XRef=;Frequency=0.94
chr3	CG	SV	141153208	141153287	10	-	.	ID=1318;Type=tandem-duplication;Left=chr3:141153208-141153287;Right=chr3:141156691-141157144
chr3	CG	SV	141156691	141157144	10	-	.	ID=1318;Type=tandem-duplication;Left=chr3:141153208-141153287;Right=chr3:141156691-141157144
chr3	CG	SV	142103520	142105048	34	.	.	ID=1317;Type=tandem-duplication;Left=chr3:142103520-142103797-;Right=chr3:142104492-142105048-;Distance=1251;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;RightRepeat=Tigger3b:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr3	CG	SV	142103520	142103797	34	-	.	ID=1317;Type=tandem-duplication;Left=chr3:142103520-142103797;Right=chr3:142104492-142105048
chr3	CG	SV	142104492	142105048	34	-	.	ID=1317;Type=tandem-duplication;Left=chr3:142103520-142103797;Right=chr3:142104492-142105048
chr3	CG	SV	147867880	147877827	33	.	.	ID=3114;Type=complex;Left=chr3:147867880-147868579+;Right=chr3:147877553-147877827+;Distance=9673;DiscordantMatePairAlignments=33;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs72156653 (chr3:147867880-147877553);Frequency=0.94
chr3	CG	SV	147867880	147868579	33	+	.	ID=3114;Type=complex;Left=chr3:147867880-147868579;Right=chr3:147877553-147877827
chr3	CG	SV	147877553	147877827	33	+	.	ID=3114;Type=complex;Left=chr3:147867880-147868579;Right=chr3:147877553-147877827
chr3	CG	SV	147867880	147873370	22	.	.	ID=3113;Type=complex;Left=chr3:147867880-147868066+;Right=chr3:147873094-147873370+;Distance=5214;DiscordantMatePairAlignments=22;LeftRepeat=L2:LINE:L2;RightRepeat=L1PA16:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	147867880	147868066	22	+	.	ID=3113;Type=complex;Left=chr3:147867880-147868066;Right=chr3:147873094-147873370
chr3	CG	SV	147873094	147873370	22	+	.	ID=3113;Type=complex;Left=chr3:147867880-147868066;Right=chr3:147873094-147873370
chr3	CG	SV	147872579	147877855	48	.	.	ID=1315;Type=complex;Left=chr3:147872579-147873094-;Right=chr3:147877568-147877855-;Distance=4761;DiscordantMatePairAlignments=48;LeftRepeat=L1PA16:LINE:L1;RightRepeat=THE1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	147872579	147873094	48	-	.	ID=1315;Type=complex;Left=chr3:147872579-147873094;Right=chr3:147877568-147877855
chr3	CG	SV	147877568	147877855	48	-	.	ID=1315;Type=complex;Left=chr3:147872579-147873094;Right=chr3:147877568-147877855
chr3	CG	SV	149764129	149768706	23	.	.	ID=3112;Type=deletion;Left=chr3:149764129-149764450+;Right=chr3:149768114-149768706+;Distance=3985;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67645862 (chr3:149764124-149768109);Frequency=0.71
chr3	CG	SV	149764129	149764450	23	+	.	ID=3112;Type=deletion;Left=chr3:149764129-149764450;Right=chr3:149768114-149768706
chr3	CG	SV	149768114	149768706	23	+	.	ID=3112;Type=deletion;Left=chr3:149764129-149764450;Right=chr3:149768114-149768706
chr3	CG	SV	150751166	150753287	56	.	.	ID=3107;Type=deletion;Left=chr3:150751166-150751651+;Right=chr3:150752841-150753287+;Distance=1675;DiscordantMatePairAlignments=56;LeftRepeat=;RightRepeat=;LeftGenes=NM_001168278:-;NM_001168280:-;NM_015472:-;RightGenes=NM_001168278:-;NM_001168280:-;NM_015472:-;XRef=rs67654479 (chr3:150751161-150752836);Frequency=0.35
chr3	CG	SV	150751166	150751651	56	+	.	ID=3107;Type=deletion;Left=chr3:150751166-150751651;Right=chr3:150752841-150753287
chr3	CG	SV	150752841	150753287	56	+	.	ID=3107;Type=deletion;Left=chr3:150751166-150751651;Right=chr3:150752841-150753287
chr3	CG	SV	153794421	153796303	97	.	.	ID=3106;Type=deletion;Left=chr3:153794421-153794992+;Right=chr3:153795853-153796303+;Distance=1432;DiscordantMatePairAlignments=97;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67110903 (chr3:153794413-153795845);Frequency=1.00
chr3	CG	SV	153794421	153794992	97	+	.	ID=3106;Type=deletion;Left=chr3:153794421-153794992;Right=chr3:153795853-153796303
chr3	CG	SV	153795853	153796303	97	+	.	ID=3106;Type=deletion;Left=chr3:153794421-153794992;Right=chr3:153795853-153796303
chr3	CG	SV	159833434	159835025	13	.	.	ID=3105;Type=deletion;Left=chr3:159833434-159833939+;Right=chr3:159834606-159835025+;Distance=1172;DiscordantMatePairAlignments=13;LeftRepeat=Charlie3:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71056148 (chr3:159833434-159834606);Frequency=0.53
chr3	CG	SV	159833434	159833939	13	+	.	ID=3105;Type=deletion;Left=chr3:159833434-159833939;Right=chr3:159834606-159835025
chr3	CG	SV	159834606	159835025	13	+	.	ID=3105;Type=deletion;Left=chr3:159833434-159833939;Right=chr3:159834606-159835025
chr3	CG	SV	164008436	164030335	138	.	.	ID=4004;Type=complex;Left=chr3:164008436-164008911+;Right=chr3:164029671-164030335-;Distance=21899;DiscordantMatePairAlignments=138;LeftRepeat=MIR:SINE:MIR;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr3	CG	SV	164008436	164008911	138	+	.	ID=4004;Type=complex;Left=chr3:164008436-164008911;Right=chr3:164029671-164030335
chr3	CG	SV	164029671	164030335	138	+	.	ID=4004;Type=complex;Left=chr3:164008436-164008911;Right=chr3:164029671-164030335
chr3	CG	SV	164027600	164030610	43	.	.	ID=507;Type=complex;Left=chr3:164027600-164028056-;Right=chr3:164030352-164030610+;Distance=2296;DiscordantMatePairAlignments=43;LeftRepeat=THE1C:LTR:MaLR;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr3	CG	SV	164027600	164028056	43	-	.	ID=507;Type=complex;Left=chr3:164027600-164028056;Right=chr3:164030352-164030610
chr3	CG	SV	164030352	164030610	43	-	.	ID=507;Type=complex;Left=chr3:164027600-164028056;Right=chr3:164030352-164030610
chr3	CG	SV	164247595	164252234	52	.	.	ID=3102;Type=deletion;Left=chr3:164247595-164248123+;Right=chr3:164251778-164252234+;Distance=4183;DiscordantMatePairAlignments=52;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Tandem TG;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67657160 (chr3:164247595-164251776);Frequency=0.88
chr3	CG	SV	164247595	164248123	52	+	.	ID=3102;Type=deletion;Left=chr3:164247595-164248123;Right=chr3:164251778-164252234
chr3	CG	SV	164251778	164252234	52	+	.	ID=3102;Type=deletion;Left=chr3:164247595-164248123;Right=chr3:164251778-164252234
chr3	CG	SV	169685403	169730430	17	.	.	ID=1313;Type=tandem-duplication;Left=chr3:169685403-169685856-;Right=chr3:169729978-169730430-;Distance=44574;DiscordantMatePairAlignments=17;LeftRepeat=MER104:DNA:Tc2;RightRepeat=THE1C:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	169685403	169685856	17	-	.	ID=1313;Type=tandem-duplication;Left=chr3:169685403-169685856;Right=chr3:169729978-169730430
chr3	CG	SV	169729978	169730430	17	-	.	ID=1313;Type=tandem-duplication;Left=chr3:169685403-169685856;Right=chr3:169729978-169730430
chr3	CG	SV	175552534	175562478	49	.	.	ID=1312;Type=tandem-duplication;Left=chr3:175552534-175553075-;Right=chr3:175562079-175562478-;Distance=9403;DiscordantMatePairAlignments=49;LeftRepeat=L1MC3:LINE:L1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	175552534	175553075	49	-	.	ID=1312;Type=tandem-duplication;Left=chr3:175552534-175553075;Right=chr3:175562079-175562478
chr3	CG	SV	175562079	175562478	49	-	.	ID=1312;Type=tandem-duplication;Left=chr3:175552534-175553075;Right=chr3:175562079-175562478
chr3	CG	SV	181137035	181138030	13	.	.	ID=3098;Type=deletion;Left=chr3:181137035-181137490+;Right=chr3:181137500-181138030+;Distance=465;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=;LeftGenes=NM_016559:-;RightGenes=NM_016559:-;XRef=rs66526785 (chr3:181137035-181137500);Frequency=0.94
chr3	CG	SV	181137035	181137490	13	+	.	ID=3098;Type=deletion;Left=chr3:181137035-181137490;Right=chr3:181137500-181138030
chr3	CG	SV	181137500	181138030	13	+	.	ID=3098;Type=deletion;Left=chr3:181137035-181137490;Right=chr3:181137500-181138030
chr3	CG	SV	188063727	188068467	80	.	.	ID=3095;Type=deletion;Left=chr3:188063727-188064467+;Right=chr3:188067996-188068467+;Distance=4269;DiscordantMatePairAlignments=80;LeftRepeat=Tandem TCCCTC;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67678013 (chr3:188063727-188067996);Frequency=1.00
chr3	CG	SV	188063727	188064467	80	+	.	ID=3095;Type=deletion;Left=chr3:188063727-188064467;Right=chr3:188067996-188068467
chr3	CG	SV	188067996	188068467	80	+	.	ID=3095;Type=deletion;Left=chr3:188063727-188064467;Right=chr3:188067996-188068467
chr3	CG	SV	191220042	191223303	11	.	.	ID=3092;Type=deletion;Left=chr3:191220042-191220565+;Right=chr3:191223222-191223303+;Distance=3180;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=MER5A:DNA:MER1_type;LeftGenes=NM_001134418:-;NM_018192:-;RightGenes=NM_001134418:-;NM_018192:-;XRef=;Frequency=0.65
chr3	CG	SV	191220042	191220565	11	+	.	ID=3092;Type=deletion;Left=chr3:191220042-191220565;Right=chr3:191223222-191223303
chr3	CG	SV	191223222	191223303	11	+	.	ID=3092;Type=deletion;Left=chr3:191220042-191220565;Right=chr3:191223222-191223303
chr3	CG	SV	193338792	193339586	14	.	.	ID=3091;Type=deletion;Left=chr3:193338792-193339352+;Right=chr3:193339130-193339586+;Distance=338;DiscordantMatePairAlignments=14;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10530679 (chr3:193338779-193339117);Frequency=1.00
chr3	CG	SV	193338792	193339352	14	+	.	ID=3091;Type=deletion;Left=chr3:193338792-193339352;Right=chr3:193339130-193339586
chr3	CG	SV	193339130	193339586	14	+	.	ID=3091;Type=deletion;Left=chr3:193338792-193339352;Right=chr3:193339130-193339586
chr3	CG	SV	194227049	194228058	31	.	.	ID=3088;Type=deletion;Left=chr3:194227049-194227315+;Right=chr3:194227589-194228058+;Distance=540;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66924869 (chr3:194227047-194227587);Frequency=0.59
chr3	CG	SV	194227049	194227315	31	+	.	ID=3088;Type=deletion;Left=chr3:194227049-194227315;Right=chr3:194227589-194228058
chr3	CG	SV	194227589	194228058	31	+	.	ID=3088;Type=deletion;Left=chr3:194227049-194227315;Right=chr3:194227589-194228058
chr3	CG	SV	194358026	194368538	34	.	.	ID=3087;Type=deletion;Left=chr3:194358026-194358491+;Right=chr3:194368102-194368538+;Distance=10076;DiscordantMatePairAlignments=34;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	194358026	194358491	34	+	.	ID=3087;Type=deletion;Left=chr3:194358026-194358491;Right=chr3:194368102-194368538
chr3	CG	SV	194368102	194368538	34	+	.	ID=3087;Type=deletion;Left=chr3:194358026-194358491;Right=chr3:194368102-194368538
chr3	CG	SV	196024583	196027724	61	.	.	ID=3086;Type=distal-duplication;Left=chr3:196024583-196025212+;Right=chr3:196027549-196027724+;Distance=2966;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72236752 (chr3:196024579-196027545);Frequency=0.76
chr3	CG	SV	196024583	196025212	61	+	.	ID=3086;Type=distal-duplication;Left=chr3:196024583-196025212;Right=chr3:196027549-196027724
chr3	CG	SV	196027549	196027724	61	+	.	ID=3086;Type=distal-duplication;Left=chr3:196024583-196025212;Right=chr3:196027549-196027724
chr3	CG	SV	196024044	196027718	142	.	.	ID=1310;Type=distal-duplication;Left=chr3:196024044-196024598-;Right=chr3:196027542-196027718-;Distance=3120;DiscordantMatePairAlignments=142;LeftRepeat=;RightRepeat=Tandem period 120;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr3	CG	SV	196024044	196024598	142	-	.	ID=1310;Type=distal-duplication;Left=chr3:196024044-196024598;Right=chr3:196027542-196027718
chr3	CG	SV	196027542	196027718	142	-	.	ID=1310;Type=distal-duplication;Left=chr3:196024044-196024598;Right=chr3:196027542-196027718
chr3	CG	SV	197138792	197140025	19	.	.	ID=3083;Type=deletion;Left=chr3:197138792-197139289+;Right=chr3:197139765-197140025+;Distance=973;DiscordantMatePairAlignments=19;LeftRepeat=LTR5_Hs:LTR:ERVK;Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr3	CG	SV	197138792	197139289	19	+	.	ID=3083;Type=deletion;Left=chr3:197138792-197139289;Right=chr3:197139765-197140025
chr3	CG	SV	197139765	197140025	19	+	.	ID=3083;Type=deletion;Left=chr3:197138792-197139289;Right=chr3:197139765-197140025
chr4	CG	SV	3581827	3582847	12	.	.	ID=3080;Type=deletion;Left=chr4:3581827-3582446+;Right=chr4:3582613-3582847+;Distance=786;DiscordantMatePairAlignments=12;LeftRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Self chain;Tandem CATC;Tandem period 19;Tandem period 27;Tandem period 35;Tandem period 53;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	3581827	3582446	12	+	.	ID=3080;Type=deletion;Left=chr4:3581827-3582446;Right=chr4:3582613-3582847
chr4	CG	SV	3582613	3582847	12	+	.	ID=3080;Type=deletion;Left=chr4:3581827-3582446;Right=chr4:3582613-3582847
chr4	CG	SV	6702494	6703970	11	.	.	ID=3078;Type=deletion;Left=chr4:6702494-6703028+;Right=chr4:6703815-6703970+;Distance=1321;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr4	CG	SV	6702494	6703028	11	+	.	ID=3078;Type=deletion;Left=chr4:6702494-6703028;Right=chr4:6703815-6703970
chr4	CG	SV	6703815	6703970	11	+	.	ID=3078;Type=deletion;Left=chr4:6702494-6703028;Right=chr4:6703815-6703970
chr4	CG	SV	10001528	10011853	126	.	.	ID=3074;Type=deletion;Left=chr4:10001528-10002025+;Right=chr4:10011279-10011853+;Distance=9751;DiscordantMatePairAlignments=126;LeftRepeat=L1MA3:LINE:L1;RightRepeat=L1MEe:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr4	CG	SV	10001528	10002025	126	+	.	ID=3074;Type=deletion;Left=chr4:10001528-10002025;Right=chr4:10011279-10011853
chr4	CG	SV	10011279	10011853	126	+	.	ID=3074;Type=deletion;Left=chr4:10001528-10002025;Right=chr4:10011279-10011853
chr4	CG	SV	18688558	18695148	132	.	.	ID=3073;Type=deletion;Left=chr4:18688558-18689062+;Right=chr4:18694658-18695148+;Distance=6100;DiscordantMatePairAlignments=132;LeftRepeat=L1ME1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67516407 (chr4:18688548-18694648);Frequency=0.71
chr4	CG	SV	18688558	18689062	132	+	.	ID=3073;Type=deletion;Left=chr4:18688558-18689062;Right=chr4:18694658-18695148
chr4	CG	SV	18694658	18695148	132	+	.	ID=3073;Type=deletion;Left=chr4:18688558-18689062;Right=chr4:18694658-18695148
chr4	CG	SV	28030689	28031671	14	.	.	ID=3072;Type=deletion;Left=chr4:28030689-28031321+;Right=chr4:28031039-28031671+;Distance=350;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67669865 (chr4:28030689-28031039);Frequency=0.94
chr4	CG	SV	28030689	28031321	14	+	.	ID=3072;Type=deletion;Left=chr4:28030689-28031321;Right=chr4:28031039-28031671
chr4	CG	SV	28031039	28031671	14	+	.	ID=3072;Type=deletion;Left=chr4:28030689-28031321;Right=chr4:28031039-28031671
chr4	CG	SV	33523565	33525170	46	.	.	ID=3067;Type=deletion;Left=chr4:33523565-33523861+;Right=chr4:33524623-33525170+;Distance=1058;DiscordantMatePairAlignments=46;LeftRepeat=MER11C:LTR:ERVK;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66649474 (chr4:33523565-33524622);Frequency=1.00
chr4	CG	SV	33523565	33523861	46	+	.	ID=3067;Type=deletion;Left=chr4:33523565-33523861;Right=chr4:33524623-33525170
chr4	CG	SV	33524623	33525170	46	+	.	ID=3067;Type=deletion;Left=chr4:33523565-33523861;Right=chr4:33524623-33525170
chr4	CG	SV	36835296	36858979	23	.	.	ID=1306;Type=tandem-duplication;Left=chr4:36835296-36835833-;Right=chr4:36858605-36858979-;Distance=23146;DiscordantMatePairAlignments=23;LeftRepeat=MLT2B1:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	36835296	36835833	23	-	.	ID=1306;Type=tandem-duplication;Left=chr4:36835296-36835833;Right=chr4:36858605-36858979
chr4	CG	SV	36858605	36858979	23	-	.	ID=1306;Type=tandem-duplication;Left=chr4:36835296-36835833;Right=chr4:36858605-36858979
chr4	CG	SV	39701342	39703352	14	.	.	ID=3066;Type=deletion;Left=chr4:39701342-39701805+;Right=chr4:39702708-39703352+;Distance=1366;DiscordantMatePairAlignments=14;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=AluSq:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs67318308 (chr4:39701310-39702676);Frequency=0.94
chr4	CG	SV	39701342	39701805	14	+	.	ID=3066;Type=deletion;Left=chr4:39701342-39701805;Right=chr4:39702708-39703352
chr4	CG	SV	39702708	39703352	14	+	.	ID=3066;Type=deletion;Left=chr4:39701342-39701805;Right=chr4:39702708-39703352
chr4	CG	SV	44202036	44203096	15	.	.	ID=3062;Type=deletion;Left=chr4:44202036-44202624+;Right=chr4:44202490-44203096+;Distance=454;DiscordantMatePairAlignments=15;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66878865 (chr4:44202032-44202486);Frequency=1.00
chr4	CG	SV	44202036	44202624	15	+	.	ID=3062;Type=deletion;Left=chr4:44202036-44202624;Right=chr4:44202490-44203096
chr4	CG	SV	44202490	44203096	15	+	.	ID=3062;Type=deletion;Left=chr4:44202036-44202624;Right=chr4:44202490-44203096
chr4	CG	SV	57782107	57782982	17	.	.	ID=3058;Type=deletion;Left=chr4:57782107-57782603+;Right=chr4:57782505-57782982+;Distance=398;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10525076 (chr4:57782093-57782491);Frequency=1.00
chr4	CG	SV	57782107	57782603	17	+	.	ID=3058;Type=deletion;Left=chr4:57782107-57782603;Right=chr4:57782505-57782982
chr4	CG	SV	57782505	57782982	17	+	.	ID=3058;Type=deletion;Left=chr4:57782107-57782603;Right=chr4:57782505-57782982
chr4	CG	SV	59627160	59633746	116	.	.	ID=3056;Type=deletion;Left=chr4:59627160-59627667+;Right=chr4:59633202-59633746+;Distance=6042;DiscordantMatePairAlignments=116;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72460317 (chr4:59627160-59633202);Frequency=0.94
chr4	CG	SV	59627160	59627667	116	+	.	ID=3056;Type=deletion;Left=chr4:59627160-59627667;Right=chr4:59633202-59633746
chr4	CG	SV	59633202	59633746	116	+	.	ID=3056;Type=deletion;Left=chr4:59627160-59627667;Right=chr4:59633202-59633746
chr4	CG	SV	61012701	61016176	15	.	.	ID=3055;Type=deletion;Left=chr4:61012701-61013040+;Right=chr4:61015781-61016176+;Distance=3080;DiscordantMatePairAlignments=15;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1PA4:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66908185 (chr4:61012701-61015780);Frequency=0.76
chr4	CG	SV	61012701	61013040	15	+	.	ID=3055;Type=deletion;Left=chr4:61012701-61013040;Right=chr4:61015781-61016176
chr4	CG	SV	61015781	61016176	15	+	.	ID=3055;Type=deletion;Left=chr4:61012701-61013040;Right=chr4:61015781-61016176
chr4	CG	SV	79488153	79494741	205	.	.	ID=3053;Type=deletion;Left=chr4:79488153-79488796+;Right=chr4:79494228-79494741+;Distance=6075;DiscordantMatePairAlignments=205;LeftRepeat=;RightRepeat=;LeftGenes=NM_001166133:+;NM_025074:+;RightGenes=NM_001166133:+;NM_025074:+;XRef=;Frequency=1.00
chr4	CG	SV	79488153	79488796	205	+	.	ID=3053;Type=deletion;Left=chr4:79488153-79488796;Right=chr4:79494228-79494741
chr4	CG	SV	79494228	79494741	205	+	.	ID=3053;Type=deletion;Left=chr4:79488153-79488796;Right=chr4:79494228-79494741
chr4	CG	SV	81107077	81113611	61	.	.	ID=3052;Type=deletion;Left=chr4:81107077-81107623+;Right=chr4:81113122-81113611+;Distance=6045;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=;LeftGenes=NM_058172:-;RightGenes=NM_058172:-;XRef=rs72038936 (chr4:81107070-81113115);Frequency=0.88
chr4	CG	SV	81107077	81107623	61	+	.	ID=3052;Type=deletion;Left=chr4:81107077-81107623;Right=chr4:81113122-81113611
chr4	CG	SV	81113122	81113611	61	+	.	ID=3052;Type=deletion;Left=chr4:81107077-81107623;Right=chr4:81113122-81113611
chr4	CG	SV	86783411	86784225	10	.	.	ID=3050;Type=deletion;Left=chr4:86783411-86784000+;Right=chr4:86783742-86784225+;Distance=331;DiscordantMatePairAlignments=10;LeftRepeat=L2:LINE:L2;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=NM_001025616:+;RightGenes=NM_001025616:+;XRef=;Frequency=0.24
chr4	CG	SV	86783411	86784000	10	+	.	ID=3050;Type=deletion;Left=chr4:86783411-86784000;Right=chr4:86783742-86784225
chr4	CG	SV	86783742	86784225	10	+	.	ID=3050;Type=deletion;Left=chr4:86783411-86784000;Right=chr4:86783742-86784225
chr4	CG	SV	88702913	88705868	113	.	.	ID=3048;Type=deletion;Left=chr4:88702913-88703492+;Right=chr4:88705342-88705868+;Distance=2429;DiscordantMatePairAlignments=113;LeftRepeat=;RightRepeat=L1ME3B:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66992231 (chr4:88702907-88705336);Frequency=0.65
chr4	CG	SV	88702913	88703492	113	+	.	ID=3048;Type=deletion;Left=chr4:88702913-88703492;Right=chr4:88705342-88705868
chr4	CG	SV	88705342	88705868	113	+	.	ID=3048;Type=deletion;Left=chr4:88702913-88703492;Right=chr4:88705342-88705868
chr4	CG	SV	91815821	91822378	75	.	.	ID=3046;Type=deletion;Left=chr4:91815821-91816303+;Right=chr4:91821944-91822378+;Distance=6123;DiscordantMatePairAlignments=75;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001145065:+;NM_207491:+;RightGenes=NM_001145065:+;NM_207491:+;XRef=rs68154073 (chr4:91815806-91821931);Frequency=1.00
chr4	CG	SV	91815821	91816303	75	+	.	ID=3046;Type=deletion;Left=chr4:91815821-91816303;Right=chr4:91821944-91822378
chr4	CG	SV	91821944	91822378	75	+	.	ID=3046;Type=deletion;Left=chr4:91815821-91816303;Right=chr4:91821944-91822378
chr4	CG	SV	94778477	94785121	91	.	.	ID=3040;Type=deletion;Left=chr4:94778477-94779037+;Right=chr4:94784528-94785121+;Distance=6051;DiscordantMatePairAlignments=91;LeftRepeat=;RightRepeat=;LeftGenes=NM_001510:+;RightGenes=NM_001510:+;XRef=rs67058757 (chr4:94778462-94784513);Frequency=0.41
chr4	CG	SV	94778477	94779037	91	+	.	ID=3040;Type=deletion;Left=chr4:94778477-94779037;Right=chr4:94784528-94785121
chr4	CG	SV	94784528	94785121	91	+	.	ID=3040;Type=deletion;Left=chr4:94778477-94779037;Right=chr4:94784528-94785121
chr4	CG	SV	100242071	100242964	11	.	.	ID=3038;Type=deletion;Left=chr4:100242071-100242447+;Right=chr4:100242405-100242964+;Distance=334;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	100242071	100242447	11	+	.	ID=3038;Type=deletion;Left=chr4:100242071-100242447;Right=chr4:100242405-100242964
chr4	CG	SV	100242405	100242964	11	+	.	ID=3038;Type=deletion;Left=chr4:100242071-100242447;Right=chr4:100242405-100242964
chr4	CG	SV	105113495	105114573	54	.	.	ID=3035;Type=deletion;Left=chr4:105113495-105114155+;Right=chr4:105114129-105114573+;Distance=634;DiscordantMatePairAlignments=54;LeftRepeat=HERV4_I:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71662133 (chr4:105113495-105114126);Frequency=0.94
chr4	CG	SV	105113495	105114155	54	+	.	ID=3035;Type=deletion;Left=chr4:105113495-105114155;Right=chr4:105114129-105114573
chr4	CG	SV	105114129	105114573	54	+	.	ID=3035;Type=deletion;Left=chr4:105113495-105114155;Right=chr4:105114129-105114573
chr4	CG	SV	108347277	108351711	123	.	.	ID=3034;Type=deletion;Left=chr4:108347277-108348005+;Right=chr4:108351183-108351711+;Distance=3906;DiscordantMatePairAlignments=123;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66829191 (chr4:108347277-108351183);Frequency=1.00
chr4	CG	SV	108347277	108348005	123	+	.	ID=3034;Type=deletion;Left=chr4:108347277-108348005;Right=chr4:108351183-108351711
chr4	CG	SV	108351183	108351711	123	+	.	ID=3034;Type=deletion;Left=chr4:108347277-108348005;Right=chr4:108351183-108351711
chr4	CG	SV	120236700	120237598	10	.	.	ID=3030;Type=deletion;Left=chr4:120236700-120237147+;Right=chr4:120237020-120237598+;Distance=320;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66829965 (chr4:120236700-120237020);Frequency=1.00
chr4	CG	SV	120236700	120237147	10	+	.	ID=3030;Type=deletion;Left=chr4:120236700-120237147;Right=chr4:120237020-120237598
chr4	CG	SV	120237020	120237598	10	+	.	ID=3030;Type=deletion;Left=chr4:120236700-120237147;Right=chr4:120237020-120237598
chr4	CG	SV	120246692	120247580	11	.	.	ID=3029;Type=deletion;Left=chr4:120246692-120247205+;Right=chr4:120247028-120247580+;Distance=336;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=MLT1K:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr4	CG	SV	120246692	120247205	11	+	.	ID=3029;Type=deletion;Left=chr4:120246692-120247205;Right=chr4:120247028-120247580
chr4	CG	SV	120247028	120247580	11	+	.	ID=3029;Type=deletion;Left=chr4:120246692-120247205;Right=chr4:120247028-120247580
chr4	CG	SV	125163017	125165399	43	.	.	ID=3027;Type=deletion;Left=chr4:125163017-125163325+;Right=chr4:125164651-125165399+;Distance=1634;DiscordantMatePairAlignments=43;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68108143 (chr4:125163017-125164651);Frequency=0.53
chr4	CG	SV	125163017	125163325	43	+	.	ID=3027;Type=deletion;Left=chr4:125163017-125163325;Right=chr4:125164651-125165399
chr4	CG	SV	125164651	125165399	43	+	.	ID=3027;Type=deletion;Left=chr4:125163017-125163325;Right=chr4:125164651-125165399
chr4	CG	SV	130435953	130439512	259	.	.	ID=3026;Type=deletion;Left=chr4:130435953-130436544+;Right=chr4:130438936-130439512+;Distance=2983;DiscordantMatePairAlignments=259;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr4	CG	SV	130435953	130436544	259	+	.	ID=3026;Type=deletion;Left=chr4:130435953-130436544;Right=chr4:130438936-130439512
chr4	CG	SV	130438936	130439512	259	+	.	ID=3026;Type=deletion;Left=chr4:130435953-130436544;Right=chr4:130438936-130439512
chr4	CG	SV	135652452	135655679	60	.	.	ID=3025;Type=deletion;Left=chr4:135652452-135652884+;Right=chr4:135655151-135655679+;Distance=2699;DiscordantMatePairAlignments=60;LeftRepeat=Arthur1:DNA:Tip100;RightRepeat=L1MA9:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72144499 (chr4:135652457-135655151);Frequency=0.71
chr4	CG	SV	135652452	135652884	60	+	.	ID=3025;Type=deletion;Left=chr4:135652452-135652884;Right=chr4:135655151-135655679
chr4	CG	SV	135655151	135655679	60	+	.	ID=3025;Type=deletion;Left=chr4:135652452-135652884;Right=chr4:135655151-135655679
chr4	CG	SV	139185661	139187323	151	.	.	ID=3024;Type=deletion;Left=chr4:139185661-139186477+;Right=chr4:139186668-139187323+;Distance=1007;DiscordantMatePairAlignments=151;LeftRepeat=MER61D:LTR:ERV1;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66727003 (chr4:139185661-139186667);Frequency=0.59
chr4	CG	SV	139185661	139186477	151	+	.	ID=3024;Type=deletion;Left=chr4:139185661-139186477;Right=chr4:139186668-139187323
chr4	CG	SV	139186668	139187323	151	+	.	ID=3024;Type=deletion;Left=chr4:139185661-139186477;Right=chr4:139186668-139187323
chr4	CG	SV	146658263	146660456	65	.	.	ID=3023;Type=deletion;Left=chr4:146658263-146658778+;Right=chr4:146659907-146660456+;Distance=1644;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001003688:+;NM_005900:+;RightGenes=NM_001003688:+;NM_005900:+;XRef=rs67125785 (chr4:146658263-146659907);Frequency=0.59
chr4	CG	SV	146658263	146658778	65	+	.	ID=3023;Type=deletion;Left=chr4:146658263-146658778;Right=chr4:146659907-146660456
chr4	CG	SV	146659907	146660456	65	+	.	ID=3023;Type=deletion;Left=chr4:146658263-146658778;Right=chr4:146659907-146660456
chr4	CG	SV	152560162	152561650	220	.	.	ID=3022;Type=deletion;Left=chr4:152560162-152560724+;Right=chr4:152561009-152561650+;Distance=847;DiscordantMatePairAlignments=220;LeftRepeat=;RightRepeat=;LeftGenes=NM_001109977:+;RightGenes=NM_001109977:+;XRef=rs72214776 (chr4:152560155-152561002);Frequency=0.94
chr4	CG	SV	152560162	152560724	220	+	.	ID=3022;Type=deletion;Left=chr4:152560162-152560724;Right=chr4:152561009-152561650
chr4	CG	SV	152561009	152561650	220	+	.	ID=3022;Type=deletion;Left=chr4:152560162-152560724;Right=chr4:152561009-152561650
chr4	CG	SV	153315151	153316208	13	.	.	ID=3021;Type=deletion;Left=chr4:153315151-153315655+;Right=chr4:153315750-153316208+;Distance=599;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr4	CG	SV	153315151	153315655	13	+	.	ID=3021;Type=deletion;Left=chr4:153315151-153315655;Right=chr4:153315750-153316208
chr4	CG	SV	153315750	153316208	13	+	.	ID=3021;Type=deletion;Left=chr4:153315151-153315655;Right=chr4:153315750-153316208
chr4	CG	SV	166222117	166224827	29	.	.	ID=3019;Type=deletion;Left=chr4:166222117-166222619+;Right=chr4:166224555-166224827+;Distance=2438;DiscordantMatePairAlignments=29;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_001100389:-;RightGenes=NM_001100389:-;XRef=rs71937308 (chr4:166222054-166224492);Frequency=1.00
chr4	CG	SV	166222117	166222619	29	+	.	ID=3019;Type=deletion;Left=chr4:166222117-166222619;Right=chr4:166224555-166224827
chr4	CG	SV	166224555	166224827	29	+	.	ID=3019;Type=deletion;Left=chr4:166222117-166222619;Right=chr4:166224555-166224827
chr4	CG	SV	167223766	167224909	24	.	.	ID=3018;Type=deletion;Left=chr4:167223766-167223966+;Right=chr4:167224369-167224909+;Distance=603;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;RightRepeat=L1MA8:LINE:L1;Self chain;LeftGenes=NM_012464:+;RightGenes=NM_012464:+;XRef=rs72050237 (chr4:167223766-167224362);Frequency=0.76
chr4	CG	SV	167223766	167223966	24	+	.	ID=3018;Type=deletion;Left=chr4:167223766-167223966;Right=chr4:167224369-167224909
chr4	CG	SV	167224369	167224909	24	+	.	ID=3018;Type=deletion;Left=chr4:167223766-167223966;Right=chr4:167224369-167224909
chr4	CG	SV	167913623	167920187	58	.	.	ID=3016;Type=deletion;Left=chr4:167913623-167914192+;Right=chr4:167919658-167920187+;Distance=6035;DiscordantMatePairAlignments=58;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001040159:-;NM_016950:-;RightGenes=NM_001040159:-;NM_016950:-;XRef=rs71929678 (chr4:167913623-167919658);Frequency=0.88
chr4	CG	SV	167913623	167914192	58	+	.	ID=3016;Type=deletion;Left=chr4:167913623-167914192;Right=chr4:167919658-167920187
chr4	CG	SV	167919658	167920187	58	+	.	ID=3016;Type=deletion;Left=chr4:167913623-167914192;Right=chr4:167919658-167920187
chr4	CG	SV	170515039	170516204	15	.	.	ID=3015;Type=deletion;Left=chr4:170515039-170515249+;Right=chr4:170515460-170516204+;Distance=421;DiscordantMatePairAlignments=15;LeftRepeat=AluJo:SINE:Alu;RightRepeat=MER58A:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs67724482 (chr4:170515039-170515460);Frequency=0.82
chr4	CG	SV	170515039	170515249	15	+	.	ID=3015;Type=deletion;Left=chr4:170515039-170515249;Right=chr4:170515460-170516204
chr4	CG	SV	170515460	170516204	15	+	.	ID=3015;Type=deletion;Left=chr4:170515039-170515249;Right=chr4:170515460-170516204
chr4	CG	SV	173661607	173670518	48	.	.	ID=3014;Type=deletion;Left=chr4:173661607-173661934+;Right=chr4:173670095-173670518+;Distance=8488;DiscordantMatePairAlignments=48;LeftRepeat=Self chain;RightRepeat=L1PB1:LINE:L1;LeftGenes=NM_001034845:+;RightGenes=NM_001034845:+;XRef=rs67651552 (chr4:173661607-173670094);Frequency=0.94
chr4	CG	SV	173661607	173661934	48	+	.	ID=3014;Type=deletion;Left=chr4:173661607-173661934;Right=chr4:173670095-173670518
chr4	CG	SV	173670095	173670518	48	+	.	ID=3014;Type=deletion;Left=chr4:173661607-173661934;Right=chr4:173670095-173670518
chr4	CG	SV	175741511	175742321	13	.	.	ID=3013;Type=deletion;Left=chr4:175741511-175742024+;Right=chr4:175741934-175742321+;Distance=423;DiscordantMatePairAlignments=13;LeftRepeat=AluSc:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72035570 (chr4:175741516-175741934);Frequency=0.10
chr4	CG	SV	175741511	175742024	13	+	.	ID=3013;Type=deletion;Left=chr4:175741511-175742024;Right=chr4:175741934-175742321
chr4	CG	SV	175741934	175742321	13	+	.	ID=3013;Type=deletion;Left=chr4:175741511-175742024;Right=chr4:175741934-175742321
chr4	CG	SV	182113787	182115960	168	.	.	ID=3006;Type=deletion;Left=chr4:182113787-182114452+;Right=chr4:182115289-182115960+;Distance=1502;DiscordantMatePairAlignments=168;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66719029 (chr4:182113780-182115282);Frequency=1.00
chr4	CG	SV	182113787	182114452	168	+	.	ID=3006;Type=deletion;Left=chr4:182113787-182114452;Right=chr4:182115289-182115960
chr4	CG	SV	182115289	182115960	168	+	.	ID=3006;Type=deletion;Left=chr4:182113787-182114452;Right=chr4:182115289-182115960
chr4	CG	SV	184494941	184495705	11	.	.	ID=3002;Type=deletion;Left=chr4:184494941-184495546+;Right=chr4:184495571-184495705+;Distance=630;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 42;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10704947 (chr4:184494864-184495242);Frequency=0.82
chr4	CG	SV	184494941	184495546	11	+	.	ID=3002;Type=deletion;Left=chr4:184494941-184495546;Right=chr4:184495571-184495705
chr4	CG	SV	184495571	184495705	11	+	.	ID=3002;Type=deletion;Left=chr4:184494941-184495546;Right=chr4:184495571-184495705
chr4	CG	SV	184892827	184896489	36	.	.	ID=3001;Type=deletion;Left=chr4:184892827-184893365+;Right=chr4:184895979-184896489+;Distance=3152;DiscordantMatePairAlignments=36;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71162502 (chr4:184892827-184895979);Frequency=0.35
chr4	CG	SV	184892827	184893365	36	+	.	ID=3001;Type=deletion;Left=chr4:184892827-184893365;Right=chr4:184895979-184896489
chr4	CG	SV	184895979	184896489	36	+	.	ID=3001;Type=deletion;Left=chr4:184892827-184893365;Right=chr4:184895979-184896489
chr4	CG	SV	184911427	184913165	46	.	.	ID=3000;Type=deletion;Left=chr4:184911427-184911976+;Right=chr4:184912887-184913165+;Distance=1460;DiscordantMatePairAlignments=46;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr4	CG	SV	184911427	184911976	46	+	.	ID=3000;Type=deletion;Left=chr4:184911427-184911976;Right=chr4:184912887-184913165
chr4	CG	SV	184912887	184913165	46	+	.	ID=3000;Type=deletion;Left=chr4:184911427-184911976;Right=chr4:184912887-184913165
chr4	CG	SV	186678631	186681652	196	.	.	ID=2996;Type=deletion;Left=chr4:186678631-186679179+;Right=chr4:186681069-186681652+;Distance=2438;DiscordantMatePairAlignments=196;LeftRepeat=;RightRepeat=;LeftGenes=NM_001114107:-;NM_014476:-;RightGenes=NM_001114107:-;NM_014476:-;XRef=;Frequency=0.94
chr4	CG	SV	186678631	186679179	196	+	.	ID=2996;Type=deletion;Left=chr4:186678631-186679179;Right=chr4:186681069-186681652
chr4	CG	SV	186681069	186681652	196	+	.	ID=2996;Type=deletion;Left=chr4:186678631-186679179;Right=chr4:186681069-186681652
chr4	CG	SV	187330481	187335660	22	.	.	ID=2995;Type=deletion;Left=chr4:187330481-187330701+;Right=chr4:187335231-187335660+;Distance=4750;DiscordantMatePairAlignments=22;LeftRepeat=;RightRepeat=;LeftGenes=NM_001006655:+;NM_015398:+;RightGenes=;XRef=;Frequency=0.88
chr4	CG	SV	187330481	187330701	22	+	.	ID=2995;Type=deletion;Left=chr4:187330481-187330701;Right=chr4:187335231-187335660
chr4	CG	SV	187335231	187335660	22	+	.	ID=2995;Type=deletion;Left=chr4:187330481-187330701;Right=chr4:187335231-187335660
chr4	CG	SV	190295008	190301802	61	.	.	ID=2991;Type=deletion;Left=chr4:190295008-190295621+;Right=chr4:190301282-190301802+;Distance=6274;DiscordantMatePairAlignments=61;LeftRepeat=L1P1:LINE:L1;RightRepeat=THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67851464 (chr4:190294992-190301266);Frequency=0.94
chr4	CG	SV	190295008	190295621	61	+	.	ID=2991;Type=deletion;Left=chr4:190295008-190295621;Right=chr4:190301282-190301802
chr4	CG	SV	190301282	190301802	61	+	.	ID=2991;Type=deletion;Left=chr4:190295008-190295621;Right=chr4:190301282-190301802
chr4	CG	SV	190342554	190343665	117	.	.	ID=2990;Type=deletion;Left=chr4:190342554-190343150+;Right=chr4:190343307-190343665+;Distance=753;DiscordantMatePairAlignments=117;LeftRepeat=Self chain;Tandem period 161;Tandem period 54;RightRepeat=Self chain;Tandem period 161;Tandem period 54;LeftGenes=;RightGenes=;XRef=rs66954860 (chr4:190342578-190343277);Frequency=1.00
chr4	CG	SV	190342554	190343150	117	+	.	ID=2990;Type=deletion;Left=chr4:190342554-190343150;Right=chr4:190343307-190343665
chr4	CG	SV	190343307	190343665	117	+	.	ID=2990;Type=deletion;Left=chr4:190342554-190343150;Right=chr4:190343307-190343665
chr4	CG	SV	190528425	190529444	13	.	.	ID=2989;Type=deletion;Left=chr4:190528425-190528911+;Right=chr4:190528744-190529444+;Distance=319;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10523783 (chr4:190528412-190528731);Frequency=1.00
chr4	CG	SV	190528425	190528911	13	+	.	ID=2989;Type=deletion;Left=chr4:190528425-190528911;Right=chr4:190528744-190529444
chr4	CG	SV	190528744	190529444	13	+	.	ID=2989;Type=deletion;Left=chr4:190528425-190528911;Right=chr4:190528744-190529444
chr4	CG	SV	190715567	190716032	22	.	.	ID=1124;Type=tandem-duplication;Left=chr4:190715567-190715794-;Right=chr4:190715910-190716032-;Distance=238;DiscordantMatePairAlignments=22;LeftRepeat=SegDup;Tandem period 16;RightRepeat=SegDup;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190715567	190715794	22	-	.	ID=1124;Type=tandem-duplication;Left=chr4:190715567-190715794;Right=chr4:190715910-190716032
chr4	CG	SV	190715910	190716032	22	-	.	ID=1124;Type=tandem-duplication;Left=chr4:190715567-190715794;Right=chr4:190715910-190716032
chr4	CG	SV	190822807	190850110	326	.	.	ID=3677;Type=probable-inversion;Left=chr4:190822807-190823476+;Right=chr4:190849496-190850110-;Distance=27303;DiscordantMatePairAlignments=326;LeftRepeat=Self chain;RightRepeat=LTR12C:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190822807	190823476	326	+	.	ID=3677;Type=probable-inversion;Left=chr4:190822807-190823476;Right=chr4:190849496-190850110
chr4	CG	SV	190849496	190850110	326	+	.	ID=3677;Type=probable-inversion;Left=chr4:190822807-190823476;Right=chr4:190849496-190850110
chr4	CG	SV	190844038	190847866	17	.	.	ID=2984;Type=deletion;Left=chr4:190844038-190844957+;Right=chr4:190847299-190847866+;Distance=3261;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem period 110;Tandem period 57;RightRepeat=MER2:DNA:MER2_type;Self chain;Tandem period 53;LeftGenes=;RightGenes=;XRef=rs71983206 (chr4:190843980-190847293);Frequency=1.00
chr4	CG	SV	190844038	190844957	17	+	.	ID=2984;Type=deletion;Left=chr4:190844038-190844957;Right=chr4:190847299-190847866
chr4	CG	SV	190847299	190847866	17	+	.	ID=2984;Type=deletion;Left=chr4:190844038-190844957;Right=chr4:190847299-190847866
chr4	CG	SV	190893454	190894717	18	.	.	ID=2982;Type=deletion;Left=chr4:190893454-190893774+;Right=chr4:190894529-190894717+;Distance=1075;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;Tandem period 105;Tandem period 35;Tandem period 70;RightRepeat=Self chain;Tandem period 105;Tandem period 35;Tandem period 70;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190893454	190893774	18	+	.	ID=2982;Type=deletion;Left=chr4:190893454-190893774;Right=chr4:190894529-190894717
chr4	CG	SV	190894529	190894717	18	+	.	ID=2982;Type=deletion;Left=chr4:190893454-190893774;Right=chr4:190894529-190894717
chr4	CG	SV	190899926	190901330	77	.	.	ID=2981;Type=deletion;Left=chr4:190899926-190900352+;Right=chr4:190900721-190901330+;Distance=795;DiscordantMatePairAlignments=77;LeftRepeat=L1PBa:LINE:L1;Self chain;RightRepeat=L1PBa:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190899926	190900352	77	+	.	ID=2981;Type=deletion;Left=chr4:190899926-190900352;Right=chr4:190900721-190901330
chr4	CG	SV	190900721	190901330	77	+	.	ID=2981;Type=deletion;Left=chr4:190899926-190900352;Right=chr4:190900721-190901330
chr4	CG	SV	191035650	191038079	24	.	.	ID=2980;Type=deletion;Left=chr4:191035650-191036042+;Right=chr4:191037595-191038079+;Distance=1945;DiscordantMatePairAlignments=24;LeftRepeat=L1PA4:LINE:L1;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	191035650	191036042	24	+	.	ID=2980;Type=deletion;Left=chr4:191035650-191036042;Right=chr4:191037595-191038079
chr4	CG	SV	191037595	191038079	24	+	.	ID=2980;Type=deletion;Left=chr4:191035650-191036042;Right=chr4:191037595-191038079
chr4	CG	SV	191179112	191179707	16	-	.	ID=857;Type=complex;Left=chr4:191179112-191179707-;Right=chr18:102176-102542-;Distance=;DiscordantMatePairAlignments=16;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	102176	102542	16	-	.	ID=857;Type=complex;Left=chr4:191179112-191179707-;Right=chr18:102176-102542-;Distance=;DiscordantMatePairAlignments=16;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	540117	541177	89	.	.	ID=2976;Type=deletion;Left=chr5:540117-540720+;Right=chr5:540676-541177+;Distance=559;DiscordantMatePairAlignments=89;LeftRepeat=(CACCG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 15;Tandem period 38;Tandem period 68;RightRepeat=(CACCG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 15;Tandem period 68;LeftGenes=NM_004174:-;RightGenes=NM_004174:-;XRef=rs67969321 (chr5:540079-540691);Frequency=0.88
chr5	CG	SV	540117	540720	89	+	.	ID=2976;Type=deletion;Left=chr5:540117-540720;Right=chr5:540676-541177
chr5	CG	SV	540676	541177	89	+	.	ID=2976;Type=deletion;Left=chr5:540117-540720;Right=chr5:540676-541177
chr5	CG	SV	1231294	1234196	43	.	.	ID=2974;Type=deletion;Left=chr5:1231294-1231608+;Right=chr5:1233733-1234196+;Distance=2439;DiscordantMatePairAlignments=43;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72222740 (chr5:1231293-1233732);Frequency=0.71
chr5	CG	SV	1231294	1231608	43	+	.	ID=2974;Type=deletion;Left=chr5:1231294-1231608;Right=chr5:1233733-1234196
chr5	CG	SV	1233733	1234196	43	+	.	ID=2974;Type=deletion;Left=chr5:1231294-1231608;Right=chr5:1233733-1234196
chr5	CG	SV	1716858	1717776	13	.	.	ID=2972;Type=deletion;Left=chr5:1716858-1717311+;Right=chr5:1717352-1717776+;Distance=494;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66494513 (chr5:1716815-1717347);Frequency=0.82
chr5	CG	SV	1716858	1717311	13	+	.	ID=2972;Type=deletion;Left=chr5:1716858-1717311;Right=chr5:1717352-1717776
chr5	CG	SV	1717352	1717776	13	+	.	ID=2972;Type=deletion;Left=chr5:1716858-1717311;Right=chr5:1717352-1717776
chr5	CG	SV	1977591	1978736	119	.	.	ID=2971;Type=deletion;Left=chr5:1977591-1978139+;Right=chr5:1978203-1978736+;Distance=612;DiscordantMatePairAlignments=119;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72120772 (chr5:1977590-1978202);Frequency=0.94
chr5	CG	SV	1977591	1978139	119	+	.	ID=2971;Type=deletion;Left=chr5:1977591-1978139;Right=chr5:1978203-1978736
chr5	CG	SV	1978203	1978736	119	+	.	ID=2971;Type=deletion;Left=chr5:1977591-1978139;Right=chr5:1978203-1978736
chr5	CG	SV	2021406	2025125	92	.	.	ID=2969;Type=deletion;Left=chr5:2021406-2021999+;Right=chr5:2024594-2025125+;Distance=3188;DiscordantMatePairAlignments=92;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71809671 (chr5:2021413-2024601);Frequency=1.00
chr5	CG	SV	2021406	2021999	92	+	.	ID=2969;Type=deletion;Left=chr5:2021406-2021999;Right=chr5:2024594-2025125
chr5	CG	SV	2024594	2025125	92	+	.	ID=2969;Type=deletion;Left=chr5:2021406-2021999;Right=chr5:2024594-2025125
chr5	CG	SV	2135241	2136026	11	.	.	ID=2968;Type=deletion;Left=chr5:2135241-2135669+;Right=chr5:2135934-2136026+;Distance=693;DiscordantMatePairAlignments=11;LeftRepeat=L1MC3:LINE:L1;Tandem period 63;RightRepeat=L1MC3:LINE:L1;Tandem period 63;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr5	CG	SV	2135241	2135669	11	+	.	ID=2968;Type=deletion;Left=chr5:2135241-2135669;Right=chr5:2135934-2136026
chr5	CG	SV	2135934	2136026	11	+	.	ID=2968;Type=deletion;Left=chr5:2135241-2135669;Right=chr5:2135934-2136026
chr5	CG	SV	2543122	2543593	11	.	.	ID=1120;Type=tandem-duplication;Left=chr5:2543122-2543314-;Right=chr5:2543348-2543593-;Distance=279;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 56;RightRepeat=Self chain;Tandem period 56;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr5	CG	SV	2543122	2543314	11	-	.	ID=1120;Type=tandem-duplication;Left=chr5:2543122-2543314;Right=chr5:2543348-2543593
chr5	CG	SV	2543348	2543593	11	-	.	ID=1120;Type=tandem-duplication;Left=chr5:2543122-2543314;Right=chr5:2543348-2543593
chr5	CG	SV	2915630	2916641	10	.	.	ID=2967;Type=deletion;Left=chr5:2915630-2916052+;Right=chr5:2916399-2916641+;Distance=769;DiscordantMatePairAlignments=10;LeftRepeat=(CCCCAG)n:Simple_repeat:Simple_repeat;Tandem AGCCAC;Tandem period 24;RightRepeat=(CCCCAG)n:Simple_repeat:Simple_repeat;Tandem AGCCAC;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr5	CG	SV	2915630	2916052	10	+	.	ID=2967;Type=deletion;Left=chr5:2915630-2916052;Right=chr5:2916399-2916641
chr5	CG	SV	2916399	2916641	10	+	.	ID=2967;Type=deletion;Left=chr5:2915630-2916052;Right=chr5:2916399-2916641
chr5	CG	SV	4925476	4925936	49	+	.	ID=2845;Type=interchromosomal;Left=chr5:4925476-4925936+;Right=chr13:112066487-112066881+;Distance=;DiscordantMatePairAlignments=49;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	112066487	112066881	49	+	.	ID=2845;Type=interchromosomal;Left=chr5:4925476-4925936+;Right=chr13:112066487-112066881+;Distance=;DiscordantMatePairAlignments=49;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	9464774	9465670	16	.	.	ID=2965;Type=deletion;Left=chr5:9464774-9465353+;Right=chr5:9465088-9465670+;Distance=314;DiscordantMatePairAlignments=16;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_003966:-;RightGenes=NM_003966:-;XRef=rs10530022 (chr5:9464760-9465074);Frequency=1.00
chr5	CG	SV	9464774	9465353	16	+	.	ID=2965;Type=deletion;Left=chr5:9464774-9465353;Right=chr5:9465088-9465670
chr5	CG	SV	9465088	9465670	16	+	.	ID=2965;Type=deletion;Left=chr5:9464774-9465353;Right=chr5:9465088-9465670
chr5	CG	SV	10627956	10628865	14	.	.	ID=2963;Type=deletion;Left=chr5:10627956-10628331+;Right=chr5:10628301-10628865+;Distance=345;DiscordantMatePairAlignments=14;LeftRepeat=AluJo:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_001164440:+;RightGenes=NM_001164440:+;XRef=;Frequency=1.00
chr5	CG	SV	10627956	10628331	14	+	.	ID=2963;Type=deletion;Left=chr5:10627956-10628331;Right=chr5:10628301-10628865
chr5	CG	SV	10628301	10628865	14	+	.	ID=2963;Type=deletion;Left=chr5:10627956-10628331;Right=chr5:10628301-10628865
chr5	CG	SV	10692107	10693874	227	.	.	ID=2962;Type=deletion;Left=chr5:10692107-10692693+;Right=chr5:10693285-10693874+;Distance=1178;DiscordantMatePairAlignments=227;LeftRepeat=Self chain;Tandem period 31;RightRepeat=Self chain;LeftGenes=NM_001164440:+;RightGenes=NM_001164440:+;XRef=;Frequency=0.59
chr5	CG	SV	10692107	10692693	227	+	.	ID=2962;Type=deletion;Left=chr5:10692107-10692693;Right=chr5:10693285-10693874
chr5	CG	SV	10693285	10693874	227	+	.	ID=2962;Type=deletion;Left=chr5:10692107-10692693;Right=chr5:10693285-10693874
chr5	CG	SV	12864019	12874064	81	.	.	ID=2960;Type=deletion;Left=chr5:12864019-12864420+;Right=chr5:12873525-12874064+;Distance=9506;DiscordantMatePairAlignments=81;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66987566 (chr5:12864019-12873525);Frequency=0.88
chr5	CG	SV	12864019	12864420	81	+	.	ID=2960;Type=deletion;Left=chr5:12864019-12864420;Right=chr5:12873525-12874064
chr5	CG	SV	12873525	12874064	81	+	.	ID=2960;Type=deletion;Left=chr5:12864019-12864420;Right=chr5:12873525-12874064
chr5	CG	SV	13469594	13476487	344	.	.	ID=2959;Type=deletion;Left=chr5:13469594-13470138+;Right=chr5:13475856-13476487+;Distance=6262;DiscordantMatePairAlignments=344;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr5	CG	SV	13469594	13470138	344	+	.	ID=2959;Type=deletion;Left=chr5:13469594-13470138;Right=chr5:13475856-13476487
chr5	CG	SV	13475856	13476487	344	+	.	ID=2959;Type=deletion;Left=chr5:13469594-13470138;Right=chr5:13475856-13476487
chr5	CG	SV	14417509	19787928	21	.	.	ID=332;Type=probable-inversion;Left=chr5:14417509-14418087-;Right=chr5:19787585-19787928+;Distance=5369498;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=;LeftGenes=NM_007118:+;RightGenes=NM_001167667:-;NM_004934:-;XRef=;Frequency=0.00
chr5	CG	SV	14417509	14418087	21	-	.	ID=332;Type=probable-inversion;Left=chr5:14417509-14418087;Right=chr5:19787585-19787928
chr5	CG	SV	19787585	19787928	21	-	.	ID=332;Type=probable-inversion;Left=chr5:14417509-14418087;Right=chr5:19787585-19787928
chr5	CG	SV	16184880	16230925	52	.	.	ID=1119;Type=tandem-duplication;Left=chr5:16184880-16185352-;Right=chr5:16230506-16230925-;Distance=45573;DiscordantMatePairAlignments=52;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_001102562:-;RightGenes=NM_001102562:-;XRef=;Frequency=0.00
chr5	CG	SV	16184880	16185352	52	-	.	ID=1119;Type=tandem-duplication;Left=chr5:16184880-16185352;Right=chr5:16230506-16230925
chr5	CG	SV	16230506	16230925	52	-	.	ID=1119;Type=tandem-duplication;Left=chr5:16184880-16185352;Right=chr5:16230506-16230925
chr5	CG	SV	17559765	17652987	13	.	.	ID=2821;Type=complex;Left=chr5:17559765-17560324+;Right=chr5:17652847-17652987+;Distance=93082;DiscordantMatePairAlignments=13;LeftRepeat=AluJb:SINE:Alu;SegDup;Self chain;RightRepeat=AluJb:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr5	CG	SV	17559765	17560324	13	+	.	ID=2821;Type=complex;Left=chr5:17559765-17560324;Right=chr5:17652847-17652987
chr5	CG	SV	17652847	17652987	13	+	.	ID=2821;Type=complex;Left=chr5:17559765-17560324;Right=chr5:17652847-17652987
chr5	CG	SV	17652608	17666826	14	.	.	ID=2820;Type=complex;Left=chr5:17652608-17653105+;Right=chr5:17666706-17666826+;Distance=14098;DiscordantMatePairAlignments=14;LeftRepeat=SegDup;Self chain;RightRepeat=Charlie2a:DNA:MER1_type;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	17652608	17653105	14	+	.	ID=2820;Type=complex;Left=chr5:17652608-17653105;Right=chr5:17666706-17666826
chr5	CG	SV	17666706	17666826	14	+	.	ID=2820;Type=complex;Left=chr5:17652608-17653105;Right=chr5:17666706-17666826
chr5	CG	SV	20340701	20356577	24	.	.	ID=1117;Type=tandem-duplication;Left=chr5:20340701-20341260-;Right=chr5:20356183-20356577-;Distance=15317;DiscordantMatePairAlignments=24;LeftRepeat=SegDup;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	20340701	20341260	24	-	.	ID=1117;Type=tandem-duplication;Left=chr5:20340701-20341260;Right=chr5:20356183-20356577
chr5	CG	SV	20356183	20356577	24	-	.	ID=1117;Type=tandem-duplication;Left=chr5:20340701-20341260;Right=chr5:20356183-20356577
chr5	CG	SV	24463678	24464786	63	.	.	ID=2816;Type=deletion;Left=chr5:24463678-24464155+;Right=chr5:24464258-24464786+;Distance=580;DiscordantMatePairAlignments=63;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=ERVL-B4:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	24463678	24464155	63	+	.	ID=2816;Type=deletion;Left=chr5:24463678-24464155;Right=chr5:24464258-24464786
chr5	CG	SV	24464258	24464786	63	+	.	ID=2816;Type=deletion;Left=chr5:24463678-24464155;Right=chr5:24464258-24464786
chr5	CG	SV	29105074	29105382	17	.	.	ID=3673;Type=probable-inversion;Left=chr5:29105074-29105544+;Right=chr5:29105110-29105382-;Distance=308;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=THE1-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr5	CG	SV	29105074	29105544	17	+	.	ID=3673;Type=probable-inversion;Left=chr5:29105074-29105544;Right=chr5:29105110-29105382
chr5	CG	SV	29105110	29105382	17	+	.	ID=3673;Type=probable-inversion;Left=chr5:29105074-29105544;Right=chr5:29105110-29105382
chr5	CG	SV	53158520	53161242	33	.	.	ID=3672;Type=probable-inversion;Left=chr5:53158520-53158673+;Right=chr5:53160772-53161242-;Distance=2722;DiscordantMatePairAlignments=33;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr5	CG	SV	53158520	53158673	33	+	.	ID=3672;Type=probable-inversion;Left=chr5:53158520-53158673;Right=chr5:53160772-53161242
chr5	CG	SV	53160772	53161242	33	+	.	ID=3672;Type=probable-inversion;Left=chr5:53158520-53158673;Right=chr5:53160772-53161242
chr5	CG	SV	57359235	57370046	56	.	.	ID=2803;Type=deletion;Left=chr5:57359235-57359750+;Right=chr5:57369537-57370046+;Distance=10302;DiscordantMatePairAlignments=56;LeftRepeat=;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr5	CG	SV	57359235	57359750	56	+	.	ID=2803;Type=deletion;Left=chr5:57359235-57359750;Right=chr5:57369537-57370046
chr5	CG	SV	57369537	57370046	56	+	.	ID=2803;Type=deletion;Left=chr5:57359235-57359750;Right=chr5:57369537-57370046
chr5	CG	SV	57715749	57722489	103	.	.	ID=2802;Type=deletion;Left=chr5:57715749-57716193+;Right=chr5:57721858-57722489+;Distance=6109;DiscordantMatePairAlignments=103;LeftRepeat=;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Tandem A;LeftGenes=;RightGenes=;XRef=rs67036290 (chr5:57715758-57721867);Frequency=1.00
chr5	CG	SV	57715749	57716193	103	+	.	ID=2802;Type=deletion;Left=chr5:57715749-57716193;Right=chr5:57721858-57722489
chr5	CG	SV	57721858	57722489	103	+	.	ID=2802;Type=deletion;Left=chr5:57715749-57716193;Right=chr5:57721858-57722489
chr5	CG	SV	60037465	60040042	112	.	.	ID=2801;Type=deletion;Left=chr5:60037465-60037994+;Right=chr5:60039426-60040042+;Distance=1961;DiscordantMatePairAlignments=112;LeftRepeat=MLT1E3:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67780732 (chr5:60037461-60039422);Frequency=0.88
chr5	CG	SV	60037465	60037994	112	+	.	ID=2801;Type=deletion;Left=chr5:60037465-60037994;Right=chr5:60039426-60040042
chr5	CG	SV	60039426	60040042	112	+	.	ID=2801;Type=deletion;Left=chr5:60037465-60037994;Right=chr5:60039426-60040042
chr5	CG	SV	65063848	65066612	154	.	.	ID=2799;Type=deletion;Left=chr5:65063848-65064476+;Right=chr5:65066145-65066612+;Distance=2297;DiscordantMatePairAlignments=154;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_020726:+;RightGenes=NM_020726:+;XRef=rs71731346 (chr5:65063855-65066152);Frequency=0.65
chr5	CG	SV	65063848	65064476	154	+	.	ID=2799;Type=deletion;Left=chr5:65063848-65064476;Right=chr5:65066145-65066612
chr5	CG	SV	65066145	65066612	154	+	.	ID=2799;Type=deletion;Left=chr5:65063848-65064476;Right=chr5:65066145-65066612
chr5	CG	SV	65539110	65563502	35	.	.	ID=2797;Type=deletion;Left=chr5:65539110-65539554+;Right=chr5:65562909-65563502+;Distance=23799;DiscordantMatePairAlignments=35;LeftRepeat=MER21C:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	65539110	65539554	35	+	.	ID=2797;Type=deletion;Left=chr5:65539110-65539554;Right=chr5:65562909-65563502
chr5	CG	SV	65562909	65563502	35	+	.	ID=2797;Type=deletion;Left=chr5:65539110-65539554;Right=chr5:65562909-65563502
chr5	CG	SV	78145555	78148250	21	.	.	ID=2791;Type=deletion;Left=chr5:78145555-78145832+;Right=chr5:78147626-78148250+;Distance=2071;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=;LeftGenes=NM_000046:-;RightGenes=NM_000046:-;NM_198709:-;XRef=rs72356644 (chr5:78145555-78147626);Frequency=0.35
chr5	CG	SV	78145555	78145832	21	+	.	ID=2791;Type=deletion;Left=chr5:78145555-78145832;Right=chr5:78147626-78148250
chr5	CG	SV	78147626	78148250	21	+	.	ID=2791;Type=deletion;Left=chr5:78145555-78145832;Right=chr5:78147626-78148250
chr5	CG	SV	87414638	87418289	38	.	.	ID=2784;Type=deletion;Left=chr5:87414638-87414823+;Right=chr5:87417822-87418289+;Distance=3184;DiscordantMatePairAlignments=38;LeftRepeat=L1ME4a:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71648095 (chr5:87414638-87417822);Frequency=0.47
chr5	CG	SV	87414638	87414823	38	+	.	ID=2784;Type=deletion;Left=chr5:87414638-87414823;Right=chr5:87417822-87418289
chr5	CG	SV	87417822	87418289	38	+	.	ID=2784;Type=deletion;Left=chr5:87414638-87414823;Right=chr5:87417822-87418289
chr5	CG	SV	90535531	90538285	95	.	.	ID=2781;Type=deletion;Left=chr5:90535531-90535953+;Right=chr5:90537854-90538285+;Distance=2323;DiscordantMatePairAlignments=95;LeftRepeat=L1ME2:LINE:L1;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=;RightGenes=;XRef=rs72404559 (chr5:90535531-90537854);Frequency=1.00
chr5	CG	SV	90535531	90535953	95	+	.	ID=2781;Type=deletion;Left=chr5:90535531-90535953;Right=chr5:90537854-90538285
chr5	CG	SV	90537854	90538285	95	+	.	ID=2781;Type=deletion;Left=chr5:90535531-90535953;Right=chr5:90537854-90538285
chr5	CG	SV	95935487	95936302	10	.	.	ID=2777;Type=deletion;Left=chr5:95935487-95936044+;Right=chr5:95935833-95936302+;Distance=346;DiscordantMatePairAlignments=10;LeftRepeat=Tandem T;RightRepeat=L1MDb:LINE:L1;LeftGenes=;RightGenes=;XRef=rs70950645 (chr5:95935487-95935833);Frequency=1.00
chr5	CG	SV	95935487	95936044	10	+	.	ID=2777;Type=deletion;Left=chr5:95935487-95936044;Right=chr5:95935833-95936302
chr5	CG	SV	95935833	95936302	10	+	.	ID=2777;Type=deletion;Left=chr5:95935487-95936044;Right=chr5:95935833-95936302
chr5	CG	SV	104748273	104794604	27	.	.	ID=2772;Type=deletion;Left=chr5:104748273-104748546+;Right=chr5:104793958-104794604+;Distance=45685;DiscordantMatePairAlignments=27;LeftRepeat=MLT2C2:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	104748273	104748546	27	+	.	ID=2772;Type=deletion;Left=chr5:104748273-104748546;Right=chr5:104793958-104794604
chr5	CG	SV	104793958	104794604	27	+	.	ID=2772;Type=deletion;Left=chr5:104748273-104748546;Right=chr5:104793958-104794604
chr5	CG	SV	115374100	115378964	36	.	.	ID=328;Type=probable-inversion;Left=chr5:115374100-115374637-;Right=chr5:115378804-115378964+;Distance=4167;DiscordantMatePairAlignments=36;LeftRepeat=;RightRepeat=;LeftGenes=NM_173800:+;RightGenes=NM_173800:+;XRef=;Frequency=0.71
chr5	CG	SV	115374100	115374637	36	-	.	ID=328;Type=probable-inversion;Left=chr5:115374100-115374637;Right=chr5:115378804-115378964
chr5	CG	SV	115378804	115378964	36	-	.	ID=328;Type=probable-inversion;Left=chr5:115374100-115374637;Right=chr5:115378804-115378964
chr5	CG	SV	120253252	120496330	38	.	.	ID=2766;Type=deletion;Left=chr5:120253252-120253816+;Right=chr5:120495940-120496330+;Distance=242688;DiscordantMatePairAlignments=38;LeftRepeat=L1P4:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	120253252	120253816	38	+	.	ID=2766;Type=deletion;Left=chr5:120253252-120253816;Right=chr5:120495940-120496330
chr5	CG	SV	120495940	120496330	38	+	.	ID=2766;Type=deletion;Left=chr5:120253252-120253816;Right=chr5:120495940-120496330
chr5	CG	SV	121604030	121609092	35	.	.	ID=2765;Type=deletion;Left=chr5:121604030-121604600+;Right=chr5:121608723-121609092+;Distance=4693;DiscordantMatePairAlignments=35;LeftRepeat=L1HS:LINE:L1;L1MA9:LINE:L1;RightRepeat=L1MA9:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr5	CG	SV	121604030	121604600	35	+	.	ID=2765;Type=deletion;Left=chr5:121604030-121604600;Right=chr5:121608723-121609092
chr5	CG	SV	121608723	121609092	35	+	.	ID=2765;Type=deletion;Left=chr5:121604030-121604600;Right=chr5:121608723-121609092
chr5	CG	SV	121952170	121955878	158	.	.	ID=2764;Type=deletion;Left=chr5:121952170-121952654+;Right=chr5:121955333-121955878+;Distance=3163;DiscordantMatePairAlignments=158;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	121952170	121952654	158	+	.	ID=2764;Type=deletion;Left=chr5:121952170-121952654;Right=chr5:121955333-121955878
chr5	CG	SV	121955333	121955878	158	+	.	ID=2764;Type=deletion;Left=chr5:121952170-121952654;Right=chr5:121955333-121955878
chr5	CG	SV	126486277	126487250	41	.	.	ID=2763;Type=deletion;Left=chr5:126486277-126486757+;Right=chr5:126486715-126487250+;Distance=438;DiscordantMatePairAlignments=41;LeftRepeat=HERV16:LTR:ERVL;RightRepeat=HERV16:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs67355812 (chr5:126486277-126486715);Frequency=0.82
chr5	CG	SV	126486277	126486757	41	+	.	ID=2763;Type=deletion;Left=chr5:126486277-126486757;Right=chr5:126486715-126487250
chr5	CG	SV	126486715	126487250	41	+	.	ID=2763;Type=deletion;Left=chr5:126486277-126486757;Right=chr5:126486715-126487250
chr5	CG	SV	127200231	127201743	13	.	.	ID=2762;Type=deletion;Left=chr5:127200231-127200731+;Right=chr5:127201181-127201743+;Distance=950;DiscordantMatePairAlignments=13;LeftRepeat=THE1C-int:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72270848 (chr5:127200229-127201179);Frequency=0.88
chr5	CG	SV	127200231	127200731	13	+	.	ID=2762;Type=deletion;Left=chr5:127200231-127200731;Right=chr5:127201181-127201743
chr5	CG	SV	127201181	127201743	13	+	.	ID=2762;Type=deletion;Left=chr5:127200231-127200731;Right=chr5:127201181-127201743
chr5	CG	SV	132946879	132953361	48	.	.	ID=2761;Type=deletion;Left=chr5:132946879-132947450+;Right=chr5:132952905-132953361+;Distance=6026;DiscordantMatePairAlignments=48;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_015082:-;RightGenes=NM_015082:-;XRef=rs66911382 (chr5:132946863-132952889);Frequency=0.24
chr5	CG	SV	132946879	132947450	48	+	.	ID=2761;Type=deletion;Left=chr5:132946879-132947450;Right=chr5:132952905-132953361
chr5	CG	SV	132952905	132953361	48	+	.	ID=2761;Type=deletion;Left=chr5:132946879-132947450;Right=chr5:132952905-132953361
chr5	CG	SV	135143128	135149119	50	.	.	ID=2759;Type=deletion;Left=chr5:135143128-135143727+;Right=chr5:135148635-135149119+;Distance=5507;DiscordantMatePairAlignments=50;LeftRepeat=SATR1:Satellite:Satellite;Self chain;Tandem period 76;RightRepeat=SATR1:Satellite:Satellite;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr5	CG	SV	135143128	135143727	50	+	.	ID=2759;Type=deletion;Left=chr5:135143128-135143727;Right=chr5:135148635-135149119
chr5	CG	SV	135148635	135149119	50	+	.	ID=2759;Type=deletion;Left=chr5:135143128-135143727;Right=chr5:135148635-135149119
chr5	CG	SV	136882608	136884690	63	.	.	ID=2758;Type=deletion;Left=chr5:136882608-136883050+;Right=chr5:136884324-136884690+;Distance=1716;DiscordantMatePairAlignments=63;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg/x:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67020614 (chr5:136882557-136884273);Frequency=1.00
chr5	CG	SV	136882608	136883050	63	+	.	ID=2758;Type=deletion;Left=chr5:136882608-136883050;Right=chr5:136884324-136884690
chr5	CG	SV	136884324	136884690	63	+	.	ID=2758;Type=deletion;Left=chr5:136882608-136883050;Right=chr5:136884324-136884690
chr5	CG	SV	137050469	137052364	124	.	.	ID=2757;Type=deletion;Left=chr5:137050469-137051065+;Right=chr5:137051793-137052364+;Distance=1324;DiscordantMatePairAlignments=124;LeftRepeat=;RightRepeat=;LeftGenes=NM_017415:-;RightGenes=NM_017415:-;XRef=rs72257455 (chr5:137050461-137051785);Frequency=0.82
chr5	CG	SV	137050469	137051065	124	+	.	ID=2757;Type=deletion;Left=chr5:137050469-137051065;Right=chr5:137051793-137052364
chr5	CG	SV	137051793	137052364	124	+	.	ID=2757;Type=deletion;Left=chr5:137050469-137051065;Right=chr5:137051793-137052364
chr5	CG	SV	142841383	142846737	55	.	.	ID=2755;Type=deletion;Left=chr5:142841383-142841887+;Right=chr5:142846270-142846737+;Distance=4887;DiscordantMatePairAlignments=55;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr5	CG	SV	142841383	142841887	55	+	.	ID=2755;Type=deletion;Left=chr5:142841383-142841887;Right=chr5:142846270-142846737
chr5	CG	SV	142846270	142846737	55	+	.	ID=2755;Type=deletion;Left=chr5:142841383-142841887;Right=chr5:142846270-142846737
chr5	CG	SV	143492300	143495244	224	.	.	ID=1113;Type=distal-duplication;Left=chr5:143492300-143492681-;Right=chr5:143494751-143495244-;Distance=2563;DiscordantMatePairAlignments=224;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	143492300	143492681	224	-	.	ID=1113;Type=distal-duplication;Left=chr5:143492300-143492681;Right=chr5:143494751-143495244
chr5	CG	SV	143494751	143495244	224	-	.	ID=1113;Type=distal-duplication;Left=chr5:143492300-143492681;Right=chr5:143494751-143495244
chr5	CG	SV	143493060	143495830	180	.	.	ID=2754;Type=distal-duplication;Left=chr5:143493060-143493434+;Right=chr5:143495240-143495830+;Distance=2180;DiscordantMatePairAlignments=180;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	143493060	143493434	180	+	.	ID=2754;Type=distal-duplication;Left=chr5:143493060-143493434;Right=chr5:143495240-143495830
chr5	CG	SV	143495240	143495830	180	+	.	ID=2754;Type=distal-duplication;Left=chr5:143493060-143493434;Right=chr5:143495240-143495830
chr5	CG	SV	144852099	144853529	21	.	.	ID=2753;Type=deletion;Left=chr5:144852099-144852430+;Right=chr5:144853000-144853529+;Distance=901;DiscordantMatePairAlignments=21;LeftRepeat=L1MA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67005411 (chr5:144852097-144852998);Frequency=0.71
chr5	CG	SV	144852099	144852430	21	+	.	ID=2753;Type=deletion;Left=chr5:144852099-144852430;Right=chr5:144853000-144853529
chr5	CG	SV	144853000	144853529	21	+	.	ID=2753;Type=deletion;Left=chr5:144852099-144852430;Right=chr5:144853000-144853529
chr5	CG	SV	147533232	147534808	202	.	.	ID=3668;Type=complex;Left=chr5:147533232-147533793+;Right=chr5:147534433-147534808-;Distance=1576;DiscordantMatePairAlignments=202;LeftRepeat=;RightRepeat=;LeftGenes=NM_001001325:+;RightGenes=NM_001001325:+;XRef=;Frequency=1.00
chr5	CG	SV	147533232	147533793	202	+	.	ID=3668;Type=complex;Left=chr5:147533232-147533793;Right=chr5:147534433-147534808
chr5	CG	SV	147534433	147534808	202	+	.	ID=3668;Type=complex;Left=chr5:147533232-147533793;Right=chr5:147534433-147534808
chr5	CG	SV	147534057	147535470	106	.	.	ID=327;Type=complex;Left=chr5:147534057-147534432-;Right=chr5:147534971-147535470+;Distance=539;DiscordantMatePairAlignments=106;LeftRepeat=;RightRepeat=MIR3:SINE:MIR;LeftGenes=NM_001001325:+;RightGenes=NM_001001325:+;XRef=;Frequency=1.00
chr5	CG	SV	147534057	147534432	106	-	.	ID=327;Type=complex;Left=chr5:147534057-147534432;Right=chr5:147534971-147535470
chr5	CG	SV	147534971	147535470	106	-	.	ID=327;Type=complex;Left=chr5:147534057-147534432;Right=chr5:147534971-147535470
chr5	CG	SV	151436614	151443280	94	.	.	ID=2749;Type=deletion;Left=chr5:151436614-151437134+;Right=chr5:151442648-151443280+;Distance=6034;DiscordantMatePairAlignments=94;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67624953 (chr5:151436606-151442640);Frequency=0.88
chr5	CG	SV	151436614	151437134	94	+	.	ID=2749;Type=deletion;Left=chr5:151436614-151437134;Right=chr5:151442648-151443280
chr5	CG	SV	151442648	151443280	94	+	.	ID=2749;Type=deletion;Left=chr5:151436614-151437134;Right=chr5:151442648-151443280
chr5	CG	SV	160521277	160523214	20	.	.	ID=2747;Type=deletion;Left=chr5:160521277-160521593+;Right=chr5:160522940-160523214+;Distance=1663;DiscordantMatePairAlignments=20;LeftRepeat=AluSg:SINE:Alu;Tandem period 15;Tandem period 7;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr5	CG	SV	160521277	160521593	20	+	.	ID=2747;Type=deletion;Left=chr5:160521277-160521593;Right=chr5:160522940-160523214
chr5	CG	SV	160522940	160523214	20	+	.	ID=2747;Type=deletion;Left=chr5:160521277-160521593;Right=chr5:160522940-160523214
chr5	CG	SV	164074173	164076425	55	.	.	ID=2746;Type=deletion;Left=chr5:164074173-164074677+;Right=chr5:164075942-164076425+;Distance=1769;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr5	CG	SV	164074173	164074677	55	+	.	ID=2746;Type=deletion;Left=chr5:164074173-164074677;Right=chr5:164075942-164076425
chr5	CG	SV	164075942	164076425	55	+	.	ID=2746;Type=deletion;Left=chr5:164074173-164074677;Right=chr5:164075942-164076425
chr5	CG	SV	164671424	165140633	29	.	.	ID=2744;Type=deletion;Left=chr5:164671424-164671848+;Right=chr5:165140140-165140633+;Distance=468716;DiscordantMatePairAlignments=29;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	164671424	164671848	29	+	.	ID=2744;Type=deletion;Left=chr5:164671424-164671848;Right=chr5:165140140-165140633
chr5	CG	SV	165140140	165140633	29	+	.	ID=2744;Type=deletion;Left=chr5:164671424-164671848;Right=chr5:165140140-165140633
chr5	CG	SV	169530275	169531327	80	.	.	ID=3667;Type=probable-inversion;Left=chr5:169530275-169530509+;Right=chr5:169530690-169531327-;Distance=1052;DiscordantMatePairAlignments=80;LeftRepeat=MIR3:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr5	CG	SV	169530275	169530509	80	+	.	ID=3667;Type=probable-inversion;Left=chr5:169530275-169530509;Right=chr5:169530690-169531327
chr5	CG	SV	169530690	169531327	80	+	.	ID=3667;Type=probable-inversion;Left=chr5:169530275-169530509;Right=chr5:169530690-169531327
chr5	CG	SV	172822334	172823332	11	.	.	ID=2742;Type=deletion;Left=chr5:172822334-172822693+;Right=chr5:172822667-172823332+;Distance=333;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr5	CG	SV	172822334	172822693	11	+	.	ID=2742;Type=deletion;Left=chr5:172822334-172822693;Right=chr5:172822667-172823332
chr5	CG	SV	172822667	172823332	11	+	.	ID=2742;Type=deletion;Left=chr5:172822334-172822693;Right=chr5:172822667-172823332
chr5	CG	SV	177754530	177756856	29	.	.	ID=2739;Type=deletion;Left=chr5:177754530-177754828+;Right=chr5:177756466-177756856+;Distance=1936;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;Tandem period 88;RightRepeat=Self chain;Tandem period 88;LeftGenes=NM_173465:-;RightGenes=NM_173465:-;XRef=;Frequency=0.71
chr5	CG	SV	177754530	177754828	29	+	.	ID=2739;Type=deletion;Left=chr5:177754530-177754828;Right=chr5:177756466-177756856
chr5	CG	SV	177756466	177756856	29	+	.	ID=2739;Type=deletion;Left=chr5:177754530-177754828;Right=chr5:177756466-177756856
chr5	CG	SV	178280974	178286120	23	.	.	ID=2738;Type=deletion;Left=chr5:178280974-178281373+;Right=chr5:178285807-178286120+;Distance=4833;DiscordantMatePairAlignments=23;LeftRepeat=L1MD2:LINE:L1;Self chain;RightRepeat=L1ME3B:LINE:L1;Self chain;LeftGenes=NM_030613:+;RightGenes=NM_030613:+;XRef=;Frequency=0.24
chr5	CG	SV	178280974	178281373	23	+	.	ID=2738;Type=deletion;Left=chr5:178280974-178281373;Right=chr5:178285807-178286120
chr5	CG	SV	178285807	178286120	23	+	.	ID=2738;Type=deletion;Left=chr5:178280974-178281373;Right=chr5:178285807-178286120
chr5	CG	SV	180501840	180503003	23	.	.	ID=2737;Type=deletion;Left=chr5:180501840-180502319+;Right=chr5:180502585-180503003+;Distance=745;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67335144 (chr5:180501840-180502585);Frequency=0.24
chr5	CG	SV	180501840	180502319	23	+	.	ID=2737;Type=deletion;Left=chr5:180501840-180502319;Right=chr5:180502585-180503003
chr5	CG	SV	180502585	180503003	23	+	.	ID=2737;Type=deletion;Left=chr5:180501840-180502319;Right=chr5:180502585-180503003
chr6	CG	SV	414047	415160	36	.	.	ID=2736;Type=deletion;Left=chr6:414047-414386+;Right=chr6:414659-415160+;Distance=612;DiscordantMatePairAlignments=36;LeftRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Tandem TCTGTC;Tandem period 10;Tandem period 36;RightRepeat=(TCTCC)n:Simple_repeat:Simple_repeat;Tandem CTCTC;Tandem period 30;Tandem period 36;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	414047	414386	36	+	.	ID=2736;Type=deletion;Left=chr6:414047-414386;Right=chr6:414659-415160
chr6	CG	SV	414659	415160	36	+	.	ID=2736;Type=deletion;Left=chr6:414047-414386;Right=chr6:414659-415160
chr6	CG	SV	802170	803242	31	.	.	ID=2735;Type=deletion;Left=chr6:802170-802475+;Right=chr6:802759-803242+;Distance=589;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Tandem ATCC;Tandem period 52;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr6	CG	SV	802170	802475	31	+	.	ID=2735;Type=deletion;Left=chr6:802170-802475;Right=chr6:802759-803242
chr6	CG	SV	802759	803242	31	+	.	ID=2735;Type=deletion;Left=chr6:802170-802475;Right=chr6:802759-803242
chr6	CG	SV	4199961	4200858	19	.	.	ID=2733;Type=deletion;Left=chr6:4199961-4200489+;Right=chr6:4200352-4200858+;Distance=391;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;Tandem period 49;RightRepeat=MER20:DNA:MER1_type;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr6	CG	SV	4199961	4200489	19	+	.	ID=2733;Type=deletion;Left=chr6:4199961-4200489;Right=chr6:4200352-4200858
chr6	CG	SV	4200352	4200858	19	+	.	ID=2733;Type=deletion;Left=chr6:4199961-4200489;Right=chr6:4200352-4200858
chr6	CG	SV	4982248	4984756	145	.	.	ID=2732;Type=deletion;Left=chr6:4982248-4982875+;Right=chr6:4984185-4984756+;Distance=1937;DiscordantMatePairAlignments=145;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	4982248	4982875	145	+	.	ID=2732;Type=deletion;Left=chr6:4982248-4982875;Right=chr6:4984185-4984756
chr6	CG	SV	4984185	4984756	145	+	.	ID=2732;Type=deletion;Left=chr6:4982248-4982875;Right=chr6:4984185-4984756
chr6	CG	SV	11664092	11665013	14	.	.	ID=2730;Type=deletion;Left=chr6:11664092-11664557+;Right=chr6:11664412-11665013+;Distance=320;DiscordantMatePairAlignments=14;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1MCc:LINE:L1;LeftGenes=NM_001100829:+;RightGenes=NM_001100829:+;XRef=rs70976611 (chr6:11664092-11664412);Frequency=1.00
chr6	CG	SV	11664092	11664557	14	+	.	ID=2730;Type=deletion;Left=chr6:11664092-11664557;Right=chr6:11664412-11665013
chr6	CG	SV	11664412	11665013	14	+	.	ID=2730;Type=deletion;Left=chr6:11664092-11664557;Right=chr6:11664412-11665013
chr6	CG	SV	12540005	12540500	51	.	.	ID=3666;Type=probable-inversion;Left=chr6:12540005-12540544+;Right=chr6:12540073-12540500-;Distance=495;DiscordantMatePairAlignments=51;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr6	CG	SV	12540005	12540544	51	+	.	ID=3666;Type=probable-inversion;Left=chr6:12540005-12540544;Right=chr6:12540073-12540500
chr6	CG	SV	12540073	12540500	51	+	.	ID=3666;Type=probable-inversion;Left=chr6:12540005-12540544;Right=chr6:12540073-12540500
chr6	CG	SV	16992947	16994542	21	.	.	ID=2727;Type=deletion;Left=chr6:16992947-16993344+;Right=chr6:16994075-16994542+;Distance=1128;DiscordantMatePairAlignments=21;LeftRepeat=LTR49:LTR:ERV1;RightRepeat=MER4D1:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr6	CG	SV	16992947	16993344	21	+	.	ID=2727;Type=deletion;Left=chr6:16992947-16993344;Right=chr6:16994075-16994542
chr6	CG	SV	16994075	16994542	21	+	.	ID=2727;Type=deletion;Left=chr6:16992947-16993344;Right=chr6:16994075-16994542
chr6	CG	SV	18510069	18511453	165	.	.	ID=2726;Type=deletion;Left=chr6:18510069-18510660+;Right=chr6:18510849-18511453+;Distance=780;DiscordantMatePairAlignments=165;LeftRepeat=;RightRepeat=MER103:DNA:DNA;LeftGenes=NM_182757:+;RightGenes=NM_182757:+;XRef=rs67792192 (chr6:18510066-18510846);Frequency=0.94
chr6	CG	SV	18510069	18510660	165	+	.	ID=2726;Type=deletion;Left=chr6:18510069-18510660;Right=chr6:18510849-18511453
chr6	CG	SV	18510849	18511453	165	+	.	ID=2726;Type=deletion;Left=chr6:18510069-18510660;Right=chr6:18510849-18511453
chr6	CG	SV	19784583	19785911	38	.	.	ID=2725;Type=deletion;Left=chr6:19784583-19785085+;Right=chr6:19785628-19785911+;Distance=1045;DiscordantMatePairAlignments=38;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr6	CG	SV	19784583	19785085	38	+	.	ID=2725;Type=deletion;Left=chr6:19784583-19785085;Right=chr6:19785628-19785911
chr6	CG	SV	19785628	19785911	38	+	.	ID=2725;Type=deletion;Left=chr6:19784583-19785085;Right=chr6:19785628-19785911
chr6	CG	SV	24919866	24926517	29	.	.	ID=2720;Type=deletion;Left=chr6:24919866-24920427+;Right=chr6:24925941-24926517+;Distance=6075;DiscordantMatePairAlignments=29;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_014722:-;RightGenes=NM_014722:-;XRef=rs72246104 (chr6:24919854-24925929);Frequency=0.94
chr6	CG	SV	24919866	24920427	29	+	.	ID=2720;Type=deletion;Left=chr6:24919866-24920427;Right=chr6:24925941-24926517
chr6	CG	SV	24925941	24926517	29	+	.	ID=2720;Type=deletion;Left=chr6:24919866-24920427;Right=chr6:24925941-24926517
chr6	CG	SV	32886732	32888192	111	.	.	ID=2716;Type=deletion;Left=chr6:32886732-32887274+;Right=chr6:32887798-32888192+;Distance=1066;DiscordantMatePairAlignments=111;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=L1MC5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs70976641 (chr6:32886732-32887798);Frequency=0.94
chr6	CG	SV	32886732	32887274	111	+	.	ID=2716;Type=deletion;Left=chr6:32886732-32887274;Right=chr6:32887798-32888192
chr6	CG	SV	32887798	32888192	111	+	.	ID=2716;Type=deletion;Left=chr6:32886732-32887274;Right=chr6:32887798-32888192
chr6	CG	SV	33201402	33202320	10	.	.	ID=2715;Type=deletion;Left=chr6:33201402-33201994+;Right=chr6:33201733-33202320+;Distance=331;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NR_001435:+;RightGenes=NR_001435:+;XRef=;Frequency=0.94
chr6	CG	SV	33201402	33201994	10	+	.	ID=2715;Type=deletion;Left=chr6:33201402-33201994;Right=chr6:33201733-33202320
chr6	CG	SV	33201733	33202320	10	+	.	ID=2715;Type=deletion;Left=chr6:33201402-33201994;Right=chr6:33201733-33202320
chr6	CG	SV	33691176	33694228	169	.	.	ID=2714;Type=deletion;Left=chr6:33691176-33691700+;Right=chr6:33693823-33694228+;Distance=2647;DiscordantMatePairAlignments=169;LeftRepeat=AluSq:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67749647 (chr6:33691175-33693822);Frequency=0.53
chr6	CG	SV	33691176	33691700	169	+	.	ID=2714;Type=deletion;Left=chr6:33691176-33691700;Right=chr6:33693823-33694228
chr6	CG	SV	33693823	33694228	169	+	.	ID=2714;Type=deletion;Left=chr6:33691176-33691700;Right=chr6:33693823-33694228
chr6	CG	SV	34807900	34809598	96	.	.	ID=2713;Type=deletion;Left=chr6:34807900-34808370+;Right=chr6:34809096-34809598+;Distance=1196;DiscordantMatePairAlignments=96;LeftRepeat=MIRb:SINE:MIR;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr6	CG	SV	34807900	34808370	96	+	.	ID=2713;Type=deletion;Left=chr6:34807900-34808370;Right=chr6:34809096-34809598
chr6	CG	SV	34809096	34809598	96	+	.	ID=2713;Type=deletion;Left=chr6:34807900-34808370;Right=chr6:34809096-34809598
chr6	CG	SV	35734412	35738197	48	.	.	ID=2712;Type=deletion;Left=chr6:35734412-35734730+;Right=chr6:35737724-35738197+;Distance=3312;DiscordantMatePairAlignments=48;LeftRepeat=L1M4:LINE:L1;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_001145775:-;NM_001145776:-;NM_001145777:-;NM_004117:-;RightGenes=NM_001145775:-;NM_001145776:-;NM_001145777:-;NM_004117:-;XRef=rs67674318 (chr6:35734410-35737722);Frequency=0.82
chr6	CG	SV	35734412	35734730	48	+	.	ID=2712;Type=deletion;Left=chr6:35734412-35734730;Right=chr6:35737724-35738197
chr6	CG	SV	35737724	35738197	48	+	.	ID=2712;Type=deletion;Left=chr6:35734412-35734730;Right=chr6:35737724-35738197
chr6	CG	SV	41972822	41973739	51	.	.	ID=2710;Type=deletion;Left=chr6:41972822-41973329+;Right=chr6:41973385-41973739+;Distance=563;DiscordantMatePairAlignments=51;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr6	CG	SV	41972822	41973329	51	+	.	ID=2710;Type=deletion;Left=chr6:41972822-41973329;Right=chr6:41973385-41973739
chr6	CG	SV	41973385	41973739	51	+	.	ID=2710;Type=deletion;Left=chr6:41972822-41973329;Right=chr6:41973385-41973739
chr6	CG	SV	51307435	51308535	33	.	.	ID=2708;Type=deletion;Left=chr6:51307435-51307736+;Right=chr6:51308085-51308535+;Distance=650;DiscordantMatePairAlignments=33;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr6	CG	SV	51307435	51307736	33	+	.	ID=2708;Type=deletion;Left=chr6:51307435-51307736;Right=chr6:51308085-51308535
chr6	CG	SV	51308085	51308535	33	+	.	ID=2708;Type=deletion;Left=chr6:51307435-51307736;Right=chr6:51308085-51308535
chr6	CG	SV	51844069	51845177	76	.	.	ID=2707;Type=deletion;Left=chr6:51844069-51844584+;Right=chr6:51844764-51845177+;Distance=695;DiscordantMatePairAlignments=76;LeftRepeat=L1ME1:LINE:L1;RightRepeat=HAL1:LINE:L1;LeftGenes=NM_138694:-;NM_170724:-;RightGenes=NM_138694:-;NM_170724:-;XRef=rs66493455 (chr6:51844068-51844763);Frequency=0.88
chr6	CG	SV	51844069	51844584	76	+	.	ID=2707;Type=deletion;Left=chr6:51844069-51844584;Right=chr6:51844764-51845177
chr6	CG	SV	51844764	51845177	76	+	.	ID=2707;Type=deletion;Left=chr6:51844069-51844584;Right=chr6:51844764-51845177
chr6	CG	SV	54032466	54036668	65	.	.	ID=1103;Type=complex;Left=chr6:54032466-54032616-;Right=chr6:54036089-54036668-;Distance=4052;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=;LeftGenes=NM_138569:+;RightGenes=NM_138569:+;XRef=;Frequency=0.88
chr6	CG	SV	54032466	54032616	65	-	.	ID=1103;Type=complex;Left=chr6:54032466-54032616;Right=chr6:54036089-54036668
chr6	CG	SV	54036089	54036668	65	-	.	ID=1103;Type=complex;Left=chr6:54032466-54032616;Right=chr6:54036089-54036668
chr6	CG	SV	54032764	54043298	26	.	.	ID=2704;Type=complex;Left=chr6:54032764-54032902+;Right=chr6:54042789-54043298+;Distance=10025;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=;LeftGenes=NM_138569:+;RightGenes=NM_138569:+;XRef=;Frequency=0.88
chr6	CG	SV	54032764	54032902	26	+	.	ID=2704;Type=complex;Left=chr6:54032764-54032902;Right=chr6:54042789-54043298
chr6	CG	SV	54042789	54043298	26	+	.	ID=2704;Type=complex;Left=chr6:54032764-54032902;Right=chr6:54042789-54043298
chr6	CG	SV	54036668	54043212	82	.	.	ID=2705;Type=complex;Left=chr6:54036668-54037017+;Right=chr6:54042787-54043212+;Distance=6119;DiscordantMatePairAlignments=82;LeftRepeat=;RightRepeat=;LeftGenes=NM_138569:+;RightGenes=NM_138569:+;XRef=;Frequency=0.88
chr6	CG	SV	54036668	54037017	82	+	.	ID=2705;Type=complex;Left=chr6:54036668-54037017;Right=chr6:54042787-54043212
chr6	CG	SV	54042787	54043212	82	+	.	ID=2705;Type=complex;Left=chr6:54036668-54037017;Right=chr6:54042787-54043212
chr6	CG	SV	57392870	57397833	113	.	.	ID=2702;Type=deletion;Left=chr6:57392870-57393422+;Right=chr6:57397315-57397833+;Distance=4445;DiscordantMatePairAlignments=113;LeftRepeat=;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs72273072 (chr6:57392872-57397315);Frequency=1.00
chr6	CG	SV	57392870	57393422	113	+	.	ID=2702;Type=deletion;Left=chr6:57392870-57393422;Right=chr6:57397315-57397833
chr6	CG	SV	57397315	57397833	113	+	.	ID=2702;Type=deletion;Left=chr6:57392870-57393422;Right=chr6:57397315-57397833
chr6	CG	SV	57405149	57409875	69	.	.	ID=2701;Type=deletion;Left=chr6:57405149-57405621+;Right=chr6:57409205-57409875+;Distance=4056;DiscordantMatePairAlignments=69;LeftRepeat=;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=;Frequency=1.00
chr6	CG	SV	57405149	57405621	69	+	.	ID=2701;Type=deletion;Left=chr6:57405149-57405621;Right=chr6:57409205-57409875
chr6	CG	SV	57409205	57409875	69	+	.	ID=2701;Type=deletion;Left=chr6:57405149-57405621;Right=chr6:57409205-57409875
chr6	CG	SV	57531033	57537719	302	.	.	ID=2700;Type=deletion;Left=chr6:57531033-57531580+;Right=chr6:57537085-57537719+;Distance=6052;DiscordantMatePairAlignments=302;LeftRepeat=;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs68023605 (chr6:57531027-57537079);Frequency=1.00
chr6	CG	SV	57531033	57531580	302	+	.	ID=2700;Type=deletion;Left=chr6:57531033-57531580;Right=chr6:57537085-57537719
chr6	CG	SV	57537085	57537719	302	+	.	ID=2700;Type=deletion;Left=chr6:57531033-57531580;Right=chr6:57537085-57537719
chr6	CG	SV	57586117	57587349	168	.	.	ID=2699;Type=deletion;Left=chr6:57586117-57586651+;Right=chr6:57586824-57587349+;Distance=707;DiscordantMatePairAlignments=168;LeftRepeat=L1ME1:LINE:L1;RightRepeat=L1ME1:LINE:L1;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs72194487 (chr6:57586107-57586814);Frequency=1.00
chr6	CG	SV	57586117	57586651	168	+	.	ID=2699;Type=deletion;Left=chr6:57586117-57586651;Right=chr6:57586824-57587349
chr6	CG	SV	57586824	57587349	168	+	.	ID=2699;Type=deletion;Left=chr6:57586117-57586651;Right=chr6:57586824-57587349
chr6	CG	SV	57691648	57698752	39	.	.	ID=2698;Type=deletion;Left=chr6:57691648-57692132+;Right=chr6:57698241-57698752+;Distance=6593;DiscordantMatePairAlignments=39;LeftRepeat=(TTTTTA)n:Simple_repeat:Simple_repeat;RightRepeat=Charlie5:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs66514956 (chr6:57691631-57698224);Frequency=1.00
chr6	CG	SV	57691648	57692132	39	+	.	ID=2698;Type=deletion;Left=chr6:57691648-57692132;Right=chr6:57698241-57698752
chr6	CG	SV	57698241	57698752	39	+	.	ID=2698;Type=deletion;Left=chr6:57691648-57692132;Right=chr6:57698241-57698752
chr6	CG	SV	62606155	62609588	43	.	.	ID=1094;Type=tandem-duplication;Left=chr6:62606155-62606676-;Right=chr6:62609188-62609588-;Distance=2912;DiscordantMatePairAlignments=43;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_152688:-;RightGenes=NM_152688:-;XRef=;Frequency=0.00
chr6	CG	SV	62606155	62606676	43	-	.	ID=1094;Type=tandem-duplication;Left=chr6:62606155-62606676;Right=chr6:62609188-62609588
chr6	CG	SV	62609188	62609588	43	-	.	ID=1094;Type=tandem-duplication;Left=chr6:62606155-62606676;Right=chr6:62609188-62609588
chr6	CG	SV	64724970	64726858	109	.	.	ID=2692;Type=deletion;Left=chr6:64724970-64725541+;Right=chr6:64726309-64726858+;Distance=1339;DiscordantMatePairAlignments=109;LeftRepeat=MER82:DNA:MER2_type;Self chain;RightRepeat=MLT1A1:LTR:MaLR;LeftGenes=NM_001142800:-;RightGenes=NM_001142800:-;XRef=rs71765003 (chr6:64724970-64726309);Frequency=0.65
chr6	CG	SV	64724970	64725541	109	+	.	ID=2692;Type=deletion;Left=chr6:64724970-64725541;Right=chr6:64726309-64726858
chr6	CG	SV	64726309	64726858	109	+	.	ID=2692;Type=deletion;Left=chr6:64724970-64725541;Right=chr6:64726309-64726858
chr6	CG	SV	66316752	66319258	222	.	.	ID=2691;Type=deletion;Left=chr6:66316752-66317348+;Right=chr6:66318746-66319258+;Distance=1994;DiscordantMatePairAlignments=222;LeftRepeat=;RightRepeat=L1HS:LINE:L1;LeftGenes=NM_001142800:-;NM_001142801:-;NM_198283:-;RightGenes=NM_001142800:-;NM_001142801:-;NM_198283:-;XRef=rs67260056 (chr6:66316748-66318742);Frequency=1.00
chr6	CG	SV	66316752	66317348	222	+	.	ID=2691;Type=deletion;Left=chr6:66316752-66317348;Right=chr6:66318746-66319258
chr6	CG	SV	66318746	66319258	222	+	.	ID=2691;Type=deletion;Left=chr6:66316752-66317348;Right=chr6:66318746-66319258
chr6	CG	SV	68158249	68169273	63	.	.	ID=2690;Type=deletion;Left=chr6:68158249-68158767+;Right=chr6:68168883-68169273+;Distance=10634;DiscordantMatePairAlignments=63;LeftRepeat=;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	68158249	68158767	63	+	.	ID=2690;Type=deletion;Left=chr6:68158249-68158767;Right=chr6:68168883-68169273
chr6	CG	SV	68168883	68169273	63	+	.	ID=2690;Type=deletion;Left=chr6:68158249-68158767;Right=chr6:68168883-68169273
chr6	CG	SV	69198885	69200285	171	.	.	ID=2689;Type=deletion;Left=chr6:69198885-69199479+;Right=chr6:69199828-69200285+;Distance=943;DiscordantMatePairAlignments=171;LeftRepeat=;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr6	CG	SV	69198885	69199479	171	+	.	ID=2689;Type=deletion;Left=chr6:69198885-69199479;Right=chr6:69199828-69200285
chr6	CG	SV	69199828	69200285	171	+	.	ID=2689;Type=deletion;Left=chr6:69198885-69199479;Right=chr6:69199828-69200285
chr6	CG	SV	74648790	74659642	56	.	.	ID=2687;Type=deletion;Left=chr6:74648790-74649324+;Right=chr6:74659169-74659642+;Distance=10379;DiscordantMatePairAlignments=56;LeftRepeat=;RightRepeat=MSTA:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr6	CG	SV	74648790	74649324	56	+	.	ID=2687;Type=deletion;Left=chr6:74648790-74649324;Right=chr6:74659169-74659642
chr6	CG	SV	74659169	74659642	56	+	.	ID=2687;Type=deletion;Left=chr6:74648790-74649324;Right=chr6:74659169-74659642
chr6	CG	SV	74922162	74923879	153	.	.	ID=2686;Type=deletion;Left=chr6:74922162-74922678+;Right=chr6:74923313-74923879+;Distance=1151;DiscordantMatePairAlignments=153;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70976682 (chr6:74922168-74923319);Frequency=0.94
chr6	CG	SV	74922162	74922678	153	+	.	ID=2686;Type=deletion;Left=chr6:74922162-74922678;Right=chr6:74923313-74923879
chr6	CG	SV	74923313	74923879	153	+	.	ID=2686;Type=deletion;Left=chr6:74922162-74922678;Right=chr6:74923313-74923879
chr6	CG	SV	77154214	77159979	43	.	.	ID=2685;Type=deletion;Left=chr6:77154214-77154731+;Right=chr6:77159363-77159979+;Distance=5149;DiscordantMatePairAlignments=43;LeftRepeat=L1MA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67536422 (chr6:77154212-77159361);Frequency=0.71
chr6	CG	SV	77154214	77154731	43	+	.	ID=2685;Type=deletion;Left=chr6:77154214-77154731;Right=chr6:77159363-77159979
chr6	CG	SV	77159363	77159979	43	+	.	ID=2685;Type=deletion;Left=chr6:77154214-77154731;Right=chr6:77159363-77159979
chr6	CG	SV	81112924	81115065	110	.	.	ID=2683;Type=deletion;Left=chr6:81112924-81113446+;Right=chr6:81114606-81115065+;Distance=1682;DiscordantMatePairAlignments=110;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	81112924	81113446	110	+	.	ID=2683;Type=deletion;Left=chr6:81112924-81113446;Right=chr6:81114606-81115065
chr6	CG	SV	81114606	81115065	110	+	.	ID=2683;Type=deletion;Left=chr6:81112924-81113446;Right=chr6:81114606-81115065
chr6	CG	SV	85374877	85381508	115	.	.	ID=2680;Type=deletion;Left=chr6:85374877-85375468+;Right=chr6:85380954-85381508+;Distance=6077;DiscordantMatePairAlignments=115;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70976689 (chr6:85374870-85380947);Frequency=1.00
chr6	CG	SV	85374877	85375468	115	+	.	ID=2680;Type=deletion;Left=chr6:85374877-85375468;Right=chr6:85380954-85381508
chr6	CG	SV	85380954	85381508	115	+	.	ID=2680;Type=deletion;Left=chr6:85374877-85375468;Right=chr6:85380954-85381508
chr6	CG	SV	89980347	89980667	72	.	.	ID=3663;Type=probable-inversion;Left=chr6:89980347-89980895+;Right=chr6:89980349-89980667-;Distance=320;DiscordantMatePairAlignments=72;LeftRepeat=L1M3:LINE:L1;RightRepeat=L1MA7:LINE:L1;LeftGenes=NM_002042:-;RightGenes=NM_002042:-;XRef=;Frequency=1.00
chr6	CG	SV	89980347	89980895	72	+	.	ID=3663;Type=probable-inversion;Left=chr6:89980347-89980895;Right=chr6:89980349-89980667
chr6	CG	SV	89980349	89980667	72	+	.	ID=3663;Type=probable-inversion;Left=chr6:89980347-89980895;Right=chr6:89980349-89980667
chr6	CG	SV	94797795	94798138	23	.	.	ID=3662;Type=probable-inversion;Left=chr6:94797795-94798186+;Right=chr6:94797822-94798138-;Distance=343;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=L1M1:LINE:L1;L1MA2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr6	CG	SV	94797795	94798186	23	+	.	ID=3662;Type=probable-inversion;Left=chr6:94797795-94798186;Right=chr6:94797822-94798138
chr6	CG	SV	94797822	94798138	23	+	.	ID=3662;Type=probable-inversion;Left=chr6:94797795-94798186;Right=chr6:94797822-94798138
chr6	CG	SV	95250042	95251621	54	.	.	ID=2678;Type=deletion;Left=chr6:95250042-95250512+;Right=chr6:95251055-95251621+;Distance=1013;DiscordantMatePairAlignments=54;LeftRepeat=L1M5:LINE:L1;RightRepeat=L1MEc:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67517600 (chr6:95250045-95251059);Frequency=0.76
chr6	CG	SV	95250042	95250512	54	+	.	ID=2678;Type=deletion;Left=chr6:95250042-95250512;Right=chr6:95251055-95251621
chr6	CG	SV	95251055	95251621	54	+	.	ID=2678;Type=deletion;Left=chr6:95250042-95250512;Right=chr6:95251055-95251621
chr6	CG	SV	100141222	100142664	101	.	.	ID=2676;Type=deletion;Left=chr6:100141222-100141821+;Right=chr6:100142042-100142664+;Distance=820;DiscordantMatePairAlignments=101;LeftRepeat=Tigger1:DNA:MER2_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67162792 (chr6:100141227-100142042);Frequency=1.00
chr6	CG	SV	100141222	100141821	101	+	.	ID=2676;Type=deletion;Left=chr6:100141222-100141821;Right=chr6:100142042-100142664
chr6	CG	SV	100142042	100142664	101	+	.	ID=2676;Type=deletion;Left=chr6:100141222-100141821;Right=chr6:100142042-100142664
chr6	CG	SV	101150766	101345173	25	.	.	ID=1090;Type=tandem-duplication;Left=chr6:101150766-101150970-;Right=chr6:101344723-101345173-;Distance=194203;DiscordantMatePairAlignments=25;LeftRepeat=L1M5:LINE:L1;RightRepeat=Self chain;LeftGenes=NM_006828:-;RightGenes=NM_006828:-;XRef=;Frequency=0.00
chr6	CG	SV	101150766	101150970	25	-	.	ID=1090;Type=tandem-duplication;Left=chr6:101150766-101150970;Right=chr6:101344723-101345173
chr6	CG	SV	101344723	101345173	25	-	.	ID=1090;Type=tandem-duplication;Left=chr6:101150766-101150970;Right=chr6:101344723-101345173
chr6	CG	SV	103844157	103869996	20	.	.	ID=2675;Type=deletion;Left=chr6:103844157-103844440+;Right=chr6:103869582-103869996+;Distance=25425;DiscordantMatePairAlignments=20;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1PA7:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr6	CG	SV	103844157	103844440	20	+	.	ID=2675;Type=deletion;Left=chr6:103844157-103844440;Right=chr6:103869582-103869996
chr6	CG	SV	103869582	103869996	20	+	.	ID=2675;Type=deletion;Left=chr6:103844157-103844440;Right=chr6:103869582-103869996
chr6	CG	SV	107090329	107091112	10	.	.	ID=2673;Type=deletion;Left=chr6:107090329-107090987+;Right=chr6:107090648-107091112+;Distance=319;DiscordantMatePairAlignments=10;LeftRepeat=L1MC4:LINE:L1;Tandem T;RightRepeat=L1MC4:LINE:L1;LeftGenes=NM_001624:+;RightGenes=NM_001624:+;XRef=rs72069284 (chr6:107090315-107090634);Frequency=1.00
chr6	CG	SV	107090329	107090987	10	+	.	ID=2673;Type=deletion;Left=chr6:107090329-107090987;Right=chr6:107090648-107091112
chr6	CG	SV	107090648	107091112	10	+	.	ID=2673;Type=deletion;Left=chr6:107090329-107090987;Right=chr6:107090648-107091112
chr6	CG	SV	107555035	107556038	16	.	.	ID=320;Type=probable-inversion;Left=chr6:107555035-107555345-;Right=chr6:107555660-107556038+;Distance=315;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	107555035	107555345	16	-	.	ID=320;Type=probable-inversion;Left=chr6:107555035-107555345;Right=chr6:107555660-107556038
chr6	CG	SV	107555660	107556038	16	-	.	ID=320;Type=probable-inversion;Left=chr6:107555035-107555345;Right=chr6:107555660-107556038
chr6	CG	SV	108138035	108139625	67	.	.	ID=2672;Type=deletion;Left=chr6:108138035-108138563+;Right=chr6:108139095-108139625+;Distance=1060;DiscordantMatePairAlignments=67;LeftRepeat=;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_198081:-;RightGenes=NM_198081:-;XRef=rs66561424 (chr6:108138035-108139079);Frequency=1.00
chr6	CG	SV	108138035	108138563	67	+	.	ID=2672;Type=deletion;Left=chr6:108138035-108138563;Right=chr6:108139095-108139625
chr6	CG	SV	108139095	108139625	67	+	.	ID=2672;Type=deletion;Left=chr6:108138035-108138563;Right=chr6:108139095-108139625
chr6	CG	SV	113807653	113810168	31	.	.	ID=2669;Type=deletion;Left=chr6:113807653-113808221+;Right=chr6:113809812-113810168+;Distance=2159;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	113807653	113808221	31	+	.	ID=2669;Type=deletion;Left=chr6:113807653-113808221;Right=chr6:113809812-113810168
chr6	CG	SV	113809812	113810168	31	+	.	ID=2669;Type=deletion;Left=chr6:113807653-113808221;Right=chr6:113809812-113810168
chr6	CG	SV	119303359	119304018	33	.	.	ID=1087;Type=tandem-duplication;Left=chr6:119303359-119303690-;Right=chr6:119303660-119304018-;Distance=328;DiscordantMatePairAlignments=33;LeftRepeat=L1M1:LINE:L1;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	119303359	119303690	33	-	.	ID=1087;Type=tandem-duplication;Left=chr6:119303359-119303690;Right=chr6:119303660-119304018
chr6	CG	SV	119303660	119304018	33	-	.	ID=1087;Type=tandem-duplication;Left=chr6:119303359-119303690;Right=chr6:119303660-119304018
chr6	CG	SV	121839144	121840179	13	.	.	ID=2664;Type=deletion;Left=chr6:121839144-121839641+;Right=chr6:121839755-121840179+;Distance=611;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr6	CG	SV	121839144	121839641	13	+	.	ID=2664;Type=deletion;Left=chr6:121839144-121839641;Right=chr6:121839755-121840179
chr6	CG	SV	121839755	121840179	13	+	.	ID=2664;Type=deletion;Left=chr6:121839144-121839641;Right=chr6:121839755-121840179
chr6	CG	SV	125750464	125753467	59	.	.	ID=2661;Type=deletion;Left=chr6:125750464-125750795+;Right=chr6:125753067-125753467+;Distance=2603;DiscordantMatePairAlignments=59;LeftRepeat=L1MDa:LINE:L1;Tandem period 11;Tandem period 8;RightRepeat=L1MDa:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr6	CG	SV	125750464	125750795	59	+	.	ID=2661;Type=deletion;Left=chr6:125750464-125750795;Right=chr6:125753067-125753467
chr6	CG	SV	125753067	125753467	59	+	.	ID=2661;Type=deletion;Left=chr6:125750464-125750795;Right=chr6:125753067-125753467
chr6	CG	SV	129361216	129367714	308	.	.	ID=2660;Type=deletion;Left=chr6:129361216-129361806+;Right=chr6:129367275-129367714+;Distance=6059;DiscordantMatePairAlignments=308;LeftRepeat=;RightRepeat=;LeftGenes=NM_000426:+;NM_001079823:+;RightGenes=NM_000426:+;NM_001079823:+;XRef=rs71701877 (chr6:129361208-129367267);Frequency=0.41
chr6	CG	SV	129361216	129361806	308	+	.	ID=2660;Type=deletion;Left=chr6:129361216-129361806;Right=chr6:129367275-129367714
chr6	CG	SV	129367275	129367714	308	+	.	ID=2660;Type=deletion;Left=chr6:129361216-129361806;Right=chr6:129367275-129367714
chr6	CG	SV	131926366	131927132	54	.	.	ID=318;Type=probable-inversion;Left=chr6:131926366-131926491-;Right=chr6:131926654-131927132+;Distance=163;DiscordantMatePairAlignments=54;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	131926366	131926491	54	-	.	ID=318;Type=probable-inversion;Left=chr6:131926366-131926491;Right=chr6:131926654-131927132
chr6	CG	SV	131926654	131927132	54	-	.	ID=318;Type=probable-inversion;Left=chr6:131926366-131926491;Right=chr6:131926654-131927132
chr6	CG	SV	133383527	133390162	169	.	.	ID=2658;Type=deletion;Left=chr6:133383527-133384063+;Right=chr6:133389592-133390162+;Distance=6065;DiscordantMatePairAlignments=169;LeftRepeat=L1ME3B:LINE:L1;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70979714 (chr6:133383513-133389578);Frequency=0.82
chr6	CG	SV	133383527	133384063	169	+	.	ID=2658;Type=deletion;Left=chr6:133383527-133384063;Right=chr6:133389592-133390162
chr6	CG	SV	133389592	133390162	169	+	.	ID=2658;Type=deletion;Left=chr6:133383527-133384063;Right=chr6:133389592-133390162
chr6	CG	SV	133991366	133992782	54	.	.	ID=2657;Type=deletion;Left=chr6:133991366-133991893+;Right=chr6:133992232-133992782+;Distance=866;DiscordantMatePairAlignments=54;LeftRepeat=ERVL-C1:LTR:ERVL;RightRepeat=ERVL-C1:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr6	CG	SV	133991366	133991893	54	+	.	ID=2657;Type=deletion;Left=chr6:133991366-133991893;Right=chr6:133992232-133992782
chr6	CG	SV	133992232	133992782	54	+	.	ID=2657;Type=deletion;Left=chr6:133991366-133991893;Right=chr6:133992232-133992782
chr6	CG	SV	134310671	134311986	401	.	.	ID=2656;Type=deletion;Left=chr6:134310671-134311270+;Right=chr6:134311419-134311986+;Distance=748;DiscordantMatePairAlignments=401;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66832735 (chr6:134310669-134311417);Frequency=1.00
chr6	CG	SV	134310671	134311270	401	+	.	ID=2656;Type=deletion;Left=chr6:134310671-134311270;Right=chr6:134311419-134311986
chr6	CG	SV	134311419	134311986	401	+	.	ID=2656;Type=deletion;Left=chr6:134310671-134311270;Right=chr6:134311419-134311986
chr6	CG	SV	137355387	137356336	34	.	.	ID=2647;Type=deletion;Left=chr6:137355387-137356063+;Right=chr6:137355880-137356336+;Distance=493;DiscordantMatePairAlignments=34;LeftRepeat=L1MC:LINE:L1;RightRepeat=;LeftGenes=NR_027994:-;RightGenes=NR_027994:-;XRef=rs67777601 (chr6:137355386-137355879);Frequency=1.00
chr6	CG	SV	137355387	137356063	34	+	.	ID=2647;Type=deletion;Left=chr6:137355387-137356063;Right=chr6:137355880-137356336
chr6	CG	SV	137355880	137356336	34	+	.	ID=2647;Type=deletion;Left=chr6:137355387-137356063;Right=chr6:137355880-137356336
chr6	CG	SV	138141278	138155014	68	.	.	ID=1085;Type=tandem-duplication;Left=chr6:138141278-138141828-;Right=chr6:138154473-138155014-;Distance=13186;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	138141278	138141828	68	-	.	ID=1085;Type=tandem-duplication;Left=chr6:138141278-138141828;Right=chr6:138154473-138155014
chr6	CG	SV	138154473	138155014	68	-	.	ID=1085;Type=tandem-duplication;Left=chr6:138141278-138141828;Right=chr6:138154473-138155014
chr6	CG	SV	143290679	143296362	31	.	.	ID=317;Type=probable-inversion;Left=chr6:143290679-143291260-;Right=chr6:143295957-143296362+;Distance=4697;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=;LeftGenes=NM_006734:-;RightGenes=NM_006734:-;XRef=;Frequency=0.00
chr6	CG	SV	143290679	143291260	31	-	.	ID=317;Type=probable-inversion;Left=chr6:143290679-143291260;Right=chr6:143295957-143296362
chr6	CG	SV	143295957	143296362	31	-	.	ID=317;Type=probable-inversion;Left=chr6:143290679-143291260;Right=chr6:143295957-143296362
chr6	CG	SV	151527808	151529146	15	.	.	ID=2645;Type=deletion;Left=chr6:151527808-151528359+;Right=chr6:151528878-151529146+;Distance=1070;DiscordantMatePairAlignments=15;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr6	CG	SV	151527808	151528359	15	+	.	ID=2645;Type=deletion;Left=chr6:151527808-151528359;Right=chr6:151528878-151529146
chr6	CG	SV	151528878	151529146	15	+	.	ID=2645;Type=deletion;Left=chr6:151527808-151528359;Right=chr6:151528878-151529146
chr6	CG	SV	153071669	153076087	87	.	.	ID=2644;Type=deletion;Left=chr6:153071669-153072121+;Right=chr6:153075487-153076087+;Distance=3818;DiscordantMatePairAlignments=87;LeftRepeat=L1MEb:LINE:L1;RightRepeat=L1MEb:LINE:L1;LeftGenes=NM_025107:+;RightGenes=NM_025107:+;XRef=;Frequency=1.00
chr6	CG	SV	153071669	153072121	87	+	.	ID=2644;Type=deletion;Left=chr6:153071669-153072121;Right=chr6:153075487-153076087
chr6	CG	SV	153075487	153076087	87	+	.	ID=2644;Type=deletion;Left=chr6:153071669-153072121;Right=chr6:153075487-153076087
chr6	CG	SV	154488622	154489492	18	.	.	ID=2643;Type=deletion;Left=chr6:154488622-154489181+;Right=chr6:154488944-154489492+;Distance=322;DiscordantMatePairAlignments=18;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_001008503:+;RightGenes=NM_001008503:+;XRef=rs70979783 (chr6:154488622-154488944);Frequency=1.00
chr6	CG	SV	154488622	154489181	18	+	.	ID=2643;Type=deletion;Left=chr6:154488622-154489181;Right=chr6:154488944-154489492
chr6	CG	SV	154488944	154489492	18	+	.	ID=2643;Type=deletion;Left=chr6:154488622-154489181;Right=chr6:154488944-154489492
chr6	CG	SV	158468266	158469659	260	.	.	ID=2642;Type=deletion;Left=chr6:158468266-158468945+;Right=chr6:158469066-158469659+;Distance=800;DiscordantMatePairAlignments=260;LeftRepeat=;RightRepeat=;LeftGenes=NM_032861:-;RightGenes=NM_032861:-;XRef=rs68179956 (chr6:158468270-158469070);Frequency=1.00
chr6	CG	SV	158468266	158468945	260	+	.	ID=2642;Type=deletion;Left=chr6:158468266-158468945;Right=chr6:158469066-158469659
chr6	CG	SV	158469066	158469659	260	+	.	ID=2642;Type=deletion;Left=chr6:158468266-158468945;Right=chr6:158469066-158469659
chr6	CG	SV	158696137	158696542	43	+	.	ID=3549;Type=interchromosomal;Left=chr6:158696137-158696542+;Right=chr17:75403713-75404151-;Distance=;DiscordantMatePairAlignments=43;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_001007466:+;NM_020245:+;RightGenes=;XRef=;Frequency=0.00
chr17	CG	SV	75403713	75404151	43	+	.	ID=3549;Type=interchromosomal;Left=chr6:158696137-158696542+;Right=chr17:75403713-75404151-;Distance=;DiscordantMatePairAlignments=43;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_001007466:+;NM_020245:+;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	159045997	159046929	21	.	.	ID=2640;Type=deletion;Left=chr6:159045997-159046512+;Right=chr6:159046508-159046929+;Distance=511;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;Tandem period 51;LeftGenes=NM_001009991:+;RightGenes=NM_001009991:+;XRef=;Frequency=0.24
chr6	CG	SV	159045997	159046512	21	+	.	ID=2640;Type=deletion;Left=chr6:159045997-159046512;Right=chr6:159046508-159046929
chr6	CG	SV	159046508	159046929	21	+	.	ID=2640;Type=deletion;Left=chr6:159045997-159046512;Right=chr6:159046508-159046929
chr6	CG	SV	159586768	159587700	10	.	.	ID=2638;Type=deletion;Left=chr6:159586768-159587161+;Right=chr6:159587091-159587700+;Distance=323;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_032532:+;RightGenes=NM_032532:+;XRef=;Frequency=1.00
chr6	CG	SV	159586768	159587161	10	+	.	ID=2638;Type=deletion;Left=chr6:159586768-159587161;Right=chr6:159587091-159587700
chr6	CG	SV	159587091	159587700	10	+	.	ID=2638;Type=deletion;Left=chr6:159586768-159587161;Right=chr6:159587091-159587700
chr6	CG	SV	165644655	165652573	39	.	.	ID=2635;Type=deletion;Left=chr6:165644655-165645207+;Right=chr6:165652121-165652573+;Distance=7466;DiscordantMatePairAlignments=39;LeftRepeat=LTR46:LTR:ERV1;RightRepeat=L1PA8:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72196192 (chr6:165644656-165652122);Frequency=0.88
chr6	CG	SV	165644655	165645207	39	+	.	ID=2635;Type=deletion;Left=chr6:165644655-165645207;Right=chr6:165652121-165652573
chr6	CG	SV	165652121	165652573	39	+	.	ID=2635;Type=deletion;Left=chr6:165644655-165645207;Right=chr6:165652121-165652573
chr6	CG	SV	167330937	167331390	10	.	.	ID=1078;Type=tandem-duplication;Left=chr6:167330937-167331086-;Right=chr6:167331102-167331390-;Distance=304;DiscordantMatePairAlignments=10;LeftRepeat=Tandem period 87;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr6	CG	SV	167330937	167331086	10	-	.	ID=1078;Type=tandem-duplication;Left=chr6:167330937-167331086;Right=chr6:167331102-167331390
chr6	CG	SV	167331102	167331390	10	-	.	ID=1078;Type=tandem-duplication;Left=chr6:167330937-167331086;Right=chr6:167331102-167331390
chr6	CG	SV	167408060	167410204	114	.	.	ID=2634;Type=deletion;Left=chr6:167408060-167408652+;Right=chr6:167409591-167410204+;Distance=1531;DiscordantMatePairAlignments=114;LeftRepeat=L1MEe:LINE:L1;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem CTTC;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	167408060	167408652	114	+	.	ID=2634;Type=deletion;Left=chr6:167408060-167408652;Right=chr6:167409591-167410204
chr6	CG	SV	167409591	167410204	114	+	.	ID=2634;Type=deletion;Left=chr6:167408060-167408652;Right=chr6:167409591-167410204
chr6	CG	SV	168459867	168462075	48	.	.	ID=2632;Type=deletion;Left=chr6:168459867-168460243+;Right=chr6:168461698-168462075+;Distance=1831;DiscordantMatePairAlignments=48;LeftRepeat=Self chain;Tandem period 109;RightRepeat=Self chain;Tandem period 109;LeftGenes=NM_214462:-;RightGenes=NM_214462:-;XRef=rs71731358 (chr6:168459767-168461373);Frequency=0.71
chr6	CG	SV	168459867	168460243	48	+	.	ID=2632;Type=deletion;Left=chr6:168459867-168460243;Right=chr6:168461698-168462075
chr6	CG	SV	168461698	168462075	48	+	.	ID=2632;Type=deletion;Left=chr6:168459867-168460243;Right=chr6:168461698-168462075
chr6	CG	SV	169056250	169056416	13	.	.	ID=1073;Type=tandem-duplication;Left=chr6:169056250-169056342-;Right=chr6:169056339-169056416-;Distance=74;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	169056250	169056342	13	-	.	ID=1073;Type=tandem-duplication;Left=chr6:169056250-169056342;Right=chr6:169056339-169056416
chr6	CG	SV	169056339	169056416	13	-	.	ID=1073;Type=tandem-duplication;Left=chr6:169056250-169056342;Right=chr6:169056339-169056416
chr6	CG	SV	170270957	170271323	12	.	.	ID=3656;Type=probable-inversion;Left=chr6:170270957-170271117+;Right=chr6:170271061-170271323-;Distance=366;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem TGCAGA;Tandem period 18;RightRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem CATCTG;Tandem period 12;Tandem period 18;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	170270957	170271117	12	+	.	ID=3656;Type=probable-inversion;Left=chr6:170270957-170271117;Right=chr6:170271061-170271323
chr6	CG	SV	170271061	170271323	12	+	.	ID=3656;Type=probable-inversion;Left=chr6:170270957-170271117;Right=chr6:170271061-170271323
chr6	CG	SV	170603652	170604099	45	.	.	ID=1072;Type=tandem-duplication;Left=chr6:170603652-170603837-;Right=chr6:170603845-170604099-;Distance=262;DiscordantMatePairAlignments=45;LeftRepeat=Self chain;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GT;Tandem GTGAGT;Tandem period 8;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr6	CG	SV	170603652	170603837	45	-	.	ID=1072;Type=tandem-duplication;Left=chr6:170603652-170603837;Right=chr6:170603845-170604099
chr6	CG	SV	170603845	170604099	45	-	.	ID=1072;Type=tandem-duplication;Left=chr6:170603652-170603837;Right=chr6:170603845-170604099
chr7	CG	SV	319126	321420	67	.	.	ID=2627;Type=deletion;Left=chr7:319126-319447+;Right=chr7:320968-321420+;Distance=1842;DiscordantMatePairAlignments=67;LeftRepeat=Self chain;Tandem period 119;Tandem period 178;Tandem period 59;RightRepeat=Self chain;Tandem period 119;Tandem period 178;Tandem period 59;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr7	CG	SV	319126	319447	67	+	.	ID=2627;Type=deletion;Left=chr7:319126-319447;Right=chr7:320968-321420
chr7	CG	SV	320968	321420	67	+	.	ID=2627;Type=deletion;Left=chr7:319126-319447;Right=chr7:320968-321420
chr7	CG	SV	895818	896967	11	.	.	ID=2624;Type=deletion;Left=chr7:895818-896015+;Right=chr7:896482-896967+;Distance=664;DiscordantMatePairAlignments=11;LeftRepeat=G-rich:Low_complexity:Low_complexity;Self chain;RightRepeat=Self chain;Tandem period 40;LeftGenes=NM_015949:+;RightGenes=NM_015949:+;XRef=;Frequency=0.47
chr7	CG	SV	895818	896015	11	+	.	ID=2624;Type=deletion;Left=chr7:895818-896015;Right=chr7:896482-896967
chr7	CG	SV	896482	896967	11	+	.	ID=2624;Type=deletion;Left=chr7:895818-896015;Right=chr7:896482-896967
chr7	CG	SV	1042850	1046908	18	.	.	ID=2622;Type=deletion;Left=chr7:1042850-1043403+;Right=chr7:1046369-1046908+;Distance=3519;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_001134395:-;NM_001134396:-;NM_032350:-;RightGenes=NM_001134395:-;NM_001134396:-;NM_032350:-;XRef=;Frequency=0.35
chr7	CG	SV	1042850	1043403	18	+	.	ID=2622;Type=deletion;Left=chr7:1042850-1043403;Right=chr7:1046369-1046908
chr7	CG	SV	1046369	1046908	18	+	.	ID=2622;Type=deletion;Left=chr7:1042850-1043403;Right=chr7:1046369-1046908
chr7	CG	SV	1133920	1136031	16	.	.	ID=2621;Type=deletion;Left=chr7:1133920-1134326+;Right=chr7:1135682-1136031+;Distance=1762;DiscordantMatePairAlignments=16;LeftRepeat=AluSg/x:SINE:Alu;Self chain;Tandem period 46;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_001134395:-;NM_001134396:-;NM_032350:-;RightGenes=NM_001134395:-;NM_001134396:-;NM_032350:-;XRef=;Frequency=0.47
chr7	CG	SV	1133920	1134326	16	+	.	ID=2621;Type=deletion;Left=chr7:1133920-1134326;Right=chr7:1135682-1136031
chr7	CG	SV	1135682	1136031	16	+	.	ID=2621;Type=deletion;Left=chr7:1133920-1134326;Right=chr7:1135682-1136031
chr7	CG	SV	1151597	1154522	62	.	.	ID=2620;Type=deletion;Left=chr7:1151597-1152181+;Right=chr7:1154187-1154522+;Distance=2590;DiscordantMatePairAlignments=62;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71703948 (chr7:1151590-1154180);Frequency=0.94
chr7	CG	SV	1151597	1152181	62	+	.	ID=2620;Type=deletion;Left=chr7:1151597-1152181;Right=chr7:1154187-1154522
chr7	CG	SV	1154187	1154522	62	+	.	ID=2620;Type=deletion;Left=chr7:1151597-1152181;Right=chr7:1154187-1154522
chr7	CG	SV	1162362	1163200	14	.	.	ID=2619;Type=deletion;Left=chr7:1162362-1162913+;Right=chr7:1162802-1163200+;Distance=440;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 63;RightRepeat=Self chain;LeftGenes=NM_182491:-;RightGenes=NM_182491:-;XRef=;Frequency=0.41
chr7	CG	SV	1162362	1162913	14	+	.	ID=2619;Type=deletion;Left=chr7:1162362-1162913;Right=chr7:1162802-1163200
chr7	CG	SV	1162802	1163200	14	+	.	ID=2619;Type=deletion;Left=chr7:1162362-1162913;Right=chr7:1162802-1163200
chr7	CG	SV	3315441	3323428	18	.	.	ID=2617;Type=deletion;Left=chr7:3315441-3315869+;Right=chr7:3322961-3323428+;Distance=7520;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=;LeftGenes=NM_152744:+;RightGenes=NM_152744:+;XRef=;Frequency=0.00
chr7	CG	SV	3315441	3315869	18	+	.	ID=2617;Type=deletion;Left=chr7:3315441-3315869;Right=chr7:3322961-3323428
chr7	CG	SV	3322961	3323428	18	+	.	ID=2617;Type=deletion;Left=chr7:3315441-3315869;Right=chr7:3322961-3323428
chr7	CG	SV	9601175	9603021	30	.	.	ID=2615;Type=deletion;Left=chr7:9601175-9601582+;Right=chr7:9602518-9603021+;Distance=1343;DiscordantMatePairAlignments=30;LeftRepeat=THE1D-int:LTR:MaLR;RightRepeat=THE1D-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs71014005 (chr7:9601175-9602518);Frequency=1.00
chr7	CG	SV	9601175	9601582	30	+	.	ID=2615;Type=deletion;Left=chr7:9601175-9601582;Right=chr7:9602518-9603021
chr7	CG	SV	9602518	9603021	30	+	.	ID=2615;Type=deletion;Left=chr7:9601175-9601582;Right=chr7:9602518-9603021
chr7	CG	SV	16138298	16141125	110	.	.	ID=2611;Type=deletion;Left=chr7:16138298-16138724+;Right=chr7:16140597-16141125+;Distance=2299;DiscordantMatePairAlignments=110;LeftRepeat=MLT1A0-int:LTR:MaLR;RightRepeat=Charlie3:DNA:MER1_type;LeftGenes=NM_001101417:-;NM_001101426:-;RightGenes=NM_001101417:-;NM_001101426:-;XRef=rs67864719 (chr7:16138298-16140597);Frequency=0.71
chr7	CG	SV	16138298	16138724	110	+	.	ID=2611;Type=deletion;Left=chr7:16138298-16138724;Right=chr7:16140597-16141125
chr7	CG	SV	16140597	16141125	110	+	.	ID=2611;Type=deletion;Left=chr7:16138298-16138724;Right=chr7:16140597-16141125
chr7	CG	SV	24004690	24007131	77	.	.	ID=2609;Type=deletion;Left=chr7:24004690-24005141+;Right=chr7:24006599-24007131+;Distance=1909;DiscordantMatePairAlignments=77;LeftRepeat=;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66575194 (chr7:24004690-24006599);Frequency=0.94
chr7	CG	SV	24004690	24005141	77	+	.	ID=2609;Type=deletion;Left=chr7:24004690-24005141;Right=chr7:24006599-24007131
chr7	CG	SV	24006599	24007131	77	+	.	ID=2609;Type=deletion;Left=chr7:24004690-24005141;Right=chr7:24006599-24007131
chr7	CG	SV	25023986	25026801	33	.	.	ID=2606;Type=deletion;Left=chr7:25023986-25024420+;Right=chr7:25026395-25026801+;Distance=2409;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr7	CG	SV	25023986	25024420	33	+	.	ID=2606;Type=deletion;Left=chr7:25023986-25024420;Right=chr7:25026395-25026801
chr7	CG	SV	25026395	25026801	33	+	.	ID=2606;Type=deletion;Left=chr7:25023986-25024420;Right=chr7:25026395-25026801
chr7	CG	SV	28180829	28181691	28	.	.	ID=2605;Type=deletion;Left=chr7:28180829-28181511+;Right=chr7:28181193-28181691+;Distance=364;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=;LeftGenes=NM_175061:-;RightGenes=NM_175061:-;XRef=rs66908294 (chr7:28180825-28181189);Frequency=0.76
chr7	CG	SV	28180829	28181511	28	+	.	ID=2605;Type=deletion;Left=chr7:28180829-28181511;Right=chr7:28181193-28181691
chr7	CG	SV	28181193	28181691	28	+	.	ID=2605;Type=deletion;Left=chr7:28180829-28181511;Right=chr7:28181193-28181691
chr7	CG	SV	28540833	28542168	63	.	.	ID=2604;Type=deletion;Left=chr7:28540833-28541468+;Right=chr7:28541683-28542168+;Distance=850;DiscordantMatePairAlignments=63;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_004904:+;NM_182898:+;NM_182899:+;RightGenes=NM_004904:+;NM_182898:+;NM_182899:+;XRef=;Frequency=0.59
chr7	CG	SV	28540833	28541468	63	+	.	ID=2604;Type=deletion;Left=chr7:28540833-28541468;Right=chr7:28541683-28542168
chr7	CG	SV	28541683	28542168	63	+	.	ID=2604;Type=deletion;Left=chr7:28540833-28541468;Right=chr7:28541683-28542168
chr7	CG	SV	31282268	31285920	49	.	.	ID=2603;Type=deletion;Left=chr7:31282268-31282781+;Right=chr7:31285702-31285920+;Distance=3434;DiscordantMatePairAlignments=49;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr7	CG	SV	31282268	31282781	49	+	.	ID=2603;Type=deletion;Left=chr7:31282268-31282781;Right=chr7:31285702-31285920
chr7	CG	SV	31285702	31285920	49	+	.	ID=2603;Type=deletion;Left=chr7:31282268-31282781;Right=chr7:31285702-31285920
chr7	CG	SV	31556831	31558748	13	.	.	ID=2602;Type=deletion;Left=chr7:31556831-31557089+;Right=chr7:31558520-31558748+;Distance=1689;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=NM_194300:+;RightGenes=NM_194300:+;XRef=;Frequency=0.59
chr7	CG	SV	31556831	31557089	13	+	.	ID=2602;Type=deletion;Left=chr7:31556831-31557089;Right=chr7:31558520-31558748
chr7	CG	SV	31558520	31558748	13	+	.	ID=2602;Type=deletion;Left=chr7:31556831-31557089;Right=chr7:31558520-31558748
chr7	CG	SV	32356690	32360349	103	.	.	ID=2601;Type=deletion;Left=chr7:32356690-32357226+;Right=chr7:32359637-32360349+;Distance=2947;DiscordantMatePairAlignments=103;LeftRepeat=(TA)n:Simple_repeat:Simple_repeat;Self chain;Tandem AT;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67720953 (chr7:32356676-32359637);Frequency=0.94
chr7	CG	SV	32356690	32357226	103	+	.	ID=2601;Type=deletion;Left=chr7:32356690-32357226;Right=chr7:32359637-32360349
chr7	CG	SV	32359637	32360349	103	+	.	ID=2601;Type=deletion;Left=chr7:32356690-32357226;Right=chr7:32359637-32360349
chr7	CG	SV	33865381	33866283	15	.	.	ID=2600;Type=deletion;Left=chr7:33865381-33866008+;Right=chr7:33865712-33866283+;Distance=331;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66914971 (chr7:33865366-33865697);Frequency=1.00
chr7	CG	SV	33865381	33866008	15	+	.	ID=2600;Type=deletion;Left=chr7:33865381-33866008;Right=chr7:33865712-33866283
chr7	CG	SV	33865712	33866283	15	+	.	ID=2600;Type=deletion;Left=chr7:33865381-33866008;Right=chr7:33865712-33866283
chr7	CG	SV	47674884	47676054	27	.	.	ID=1057;Type=tandem-duplication;Left=chr7:47674884-47675243-;Right=chr7:47675463-47676054-;Distance=811;DiscordantMatePairAlignments=27;LeftRepeat=MLT1B:LTR:MaLR;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr7	CG	SV	47674884	47675243	27	-	.	ID=1057;Type=tandem-duplication;Left=chr7:47674884-47675243;Right=chr7:47675463-47676054
chr7	CG	SV	47675463	47676054	27	-	.	ID=1057;Type=tandem-duplication;Left=chr7:47674884-47675243;Right=chr7:47675463-47676054
chr7	CG	SV	53309009	53312152	38	.	.	ID=2593;Type=deletion;Left=chr7:53309009-53309595+;Right=chr7:53311820-53312152+;Distance=2811;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	53309009	53309595	38	+	.	ID=2593;Type=deletion;Left=chr7:53309009-53309595;Right=chr7:53311820-53312152
chr7	CG	SV	53311820	53312152	38	+	.	ID=2593;Type=deletion;Left=chr7:53309009-53309595;Right=chr7:53311820-53312152
chr7	CG	SV	54563980	54565269	26	.	.	ID=2592;Type=deletion;Left=chr7:54563980-54564368+;Right=chr7:54564927-54565269+;Distance=947;DiscordantMatePairAlignments=26;LeftRepeat=L1MC3:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72118222 (chr7:54563980-54564927);Frequency=0.12
chr7	CG	SV	54563980	54564368	26	+	.	ID=2592;Type=deletion;Left=chr7:54563980-54564368;Right=chr7:54564927-54565269
chr7	CG	SV	54564927	54565269	26	+	.	ID=2592;Type=deletion;Left=chr7:54563980-54564368;Right=chr7:54564927-54565269
chr7	CG	SV	55254252	55257102	38	.	.	ID=2591;Type=deletion;Left=chr7:55254252-55254837+;Right=chr7:55256570-55257102+;Distance=2318;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71805120 (chr7:55254237-55256555);Frequency=0.82
chr7	CG	SV	55254252	55254837	38	+	.	ID=2591;Type=deletion;Left=chr7:55254252-55254837;Right=chr7:55256570-55257102
chr7	CG	SV	55256570	55257102	38	+	.	ID=2591;Type=deletion;Left=chr7:55254252-55254837;Right=chr7:55256570-55257102
chr7	CG	SV	56729478	56737919	16	.	.	ID=2590;Type=deletion;Left=chr7:56729478-56729841+;Right=chr7:56737445-56737919+;Distance=7967;DiscordantMatePairAlignments=16;LeftRepeat=SegDup;Self chain;RightRepeat=MER49:LTR:ERV1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs67974562 (chr7:56729478-56737445);Frequency=0.35
chr7	CG	SV	56729478	56729841	16	+	.	ID=2590;Type=deletion;Left=chr7:56729478-56729841;Right=chr7:56737445-56737919
chr7	CG	SV	56737445	56737919	16	+	.	ID=2590;Type=deletion;Left=chr7:56729478-56729841;Right=chr7:56737445-56737919
chr7	CG	SV	63953259	63955939	52	.	.	ID=2586;Type=deletion;Left=chr7:63953259-63953892+;Right=chr7:63955510-63955939+;Distance=2251;DiscordantMatePairAlignments=52;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71014041 (chr7:63953259-63955510);Frequency=1.00
chr7	CG	SV	63953259	63953892	52	+	.	ID=2586;Type=deletion;Left=chr7:63953259-63953892;Right=chr7:63955510-63955939
chr7	CG	SV	63955510	63955939	52	+	.	ID=2586;Type=deletion;Left=chr7:63953259-63953892;Right=chr7:63955510-63955939
chr7	CG	SV	65831385	73020325	16	.	.	ID=2584;Type=deletion;Left=chr7:65831385-65831627+;Right=chr7:73020076-73020325+;Distance=7188691;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=C-rich:Low_complexity:Low_complexity;SegDup;Self chain;Tandem period 12;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	65831385	65831627	16	+	.	ID=2584;Type=deletion;Left=chr7:65831385-65831627;Right=chr7:73020076-73020325
chr7	CG	SV	73020076	73020325	16	+	.	ID=2584;Type=deletion;Left=chr7:65831385-65831627;Right=chr7:73020076-73020325
chr7	CG	SV	67273508	97920775	27	.	.	ID=3644;Type=probable-inversion;Left=chr7:67273508-67274162+;Right=chr7:97920476-97920775-;Distance=30647267;DiscordantMatePairAlignments=27;LeftRepeat=(GA)n:Simple_repeat:Simple_repeat;Self chain;Tandem GA;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	67273508	67274162	27	+	.	ID=3644;Type=probable-inversion;Left=chr7:67273508-67274162;Right=chr7:97920476-97920775
chr7	CG	SV	97920476	97920775	27	+	.	ID=3644;Type=probable-inversion;Left=chr7:67273508-67274162;Right=chr7:97920476-97920775
chr7	CG	SV	70058905	70076821	54	.	.	ID=3643;Type=complex;Left=chr7:70058905-70059298+;Right=chr7:70076260-70076821-;Distance=17916;DiscordantMatePairAlignments=54;LeftRepeat=MER4C:LTR:ERV1;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr7	CG	SV	70058905	70059298	54	+	.	ID=3643;Type=complex;Left=chr7:70058905-70059298;Right=chr7:70076260-70076821
chr7	CG	SV	70076260	70076821	54	+	.	ID=3643;Type=complex;Left=chr7:70058905-70059298;Right=chr7:70076260-70076821
chr7	CG	SV	70063789	70077380	37	.	.	ID=304;Type=complex;Left=chr7:70063789-70064120-;Right=chr7:70076816-70077380+;Distance=12696;DiscordantMatePairAlignments=37;LeftRepeat=L1MEc:LINE:L1;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr7	CG	SV	70063789	70064120	37	-	.	ID=304;Type=complex;Left=chr7:70063789-70064120;Right=chr7:70076816-70077380
chr7	CG	SV	70076816	70077380	37	-	.	ID=304;Type=complex;Left=chr7:70063789-70064120;Right=chr7:70076816-70077380
chr7	CG	SV	70849845	70851330	76	.	.	ID=2581;Type=deletion;Left=chr7:70849845-70850437+;Right=chr7:70850902-70851330+;Distance=1057;DiscordantMatePairAlignments=76;LeftRepeat=AluSp:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	70849845	70850437	76	+	.	ID=2581;Type=deletion;Left=chr7:70849845-70850437;Right=chr7:70850902-70851330
chr7	CG	SV	70850902	70851330	76	+	.	ID=2581;Type=deletion;Left=chr7:70849845-70850437;Right=chr7:70850902-70851330
chr7	CG	SV	71283862	71374368	36	.	.	ID=1051;Type=tandem-duplication;Left=chr7:71283862-71284485-;Right=chr7:71373985-71374368-;Distance=89883;DiscordantMatePairAlignments=36;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=FRAM:SINE:Alu;Self chain;LeftGenes=NM_001017440:-;NM_031468:-;RightGenes=NM_001017440:-;NM_031468:-;XRef=;Frequency=0.00
chr7	CG	SV	71283862	71284485	36	-	.	ID=1051;Type=tandem-duplication;Left=chr7:71283862-71284485;Right=chr7:71373985-71374368
chr7	CG	SV	71373985	71374368	36	-	.	ID=1051;Type=tandem-duplication;Left=chr7:71283862-71284485;Right=chr7:71373985-71374368
chr7	CG	SV	71533985	71541939	13	.	.	ID=2580;Type=deletion;Left=chr7:71533985-71534594+;Right=chr7:71541170-71541939+;Distance=7185;DiscordantMatePairAlignments=13;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	71533985	71534594	13	+	.	ID=2580;Type=deletion;Left=chr7:71533985-71534594;Right=chr7:71541170-71541939
chr7	CG	SV	71541170	71541939	13	+	.	ID=2580;Type=deletion;Left=chr7:71533985-71534594;Right=chr7:71541170-71541939
chr7	CG	SV	81279606	81280769	14	.	.	ID=2564;Type=deletion;Left=chr7:81279606-81280150+;Right=chr7:81280513-81280769+;Distance=907;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr7	CG	SV	81279606	81280150	14	+	.	ID=2564;Type=deletion;Left=chr7:81279606-81280150;Right=chr7:81280513-81280769
chr7	CG	SV	81280513	81280769	14	+	.	ID=2564;Type=deletion;Left=chr7:81279606-81280150;Right=chr7:81280513-81280769
chr7	CG	SV	87929243	87930173	11	.	.	ID=2563;Type=deletion;Left=chr7:87929243-87929825+;Right=chr7:87929693-87930173+;Distance=450;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66468286 (chr7:87929235-87929685);Frequency=1.00
chr7	CG	SV	87929243	87929825	11	+	.	ID=2563;Type=deletion;Left=chr7:87929243-87929825;Right=chr7:87929693-87930173
chr7	CG	SV	87929693	87930173	11	+	.	ID=2563;Type=deletion;Left=chr7:87929243-87929825;Right=chr7:87929693-87930173
chr7	CG	SV	89648345	89651007	26	.	.	ID=2561;Type=deletion;Left=chr7:89648345-89648822+;Right=chr7:89650537-89651007+;Distance=2192;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs68048497 (chr7:89648343-89650535);Frequency=0.76
chr7	CG	SV	89648345	89648822	26	+	.	ID=2561;Type=deletion;Left=chr7:89648345-89648822;Right=chr7:89650537-89651007
chr7	CG	SV	89650537	89651007	26	+	.	ID=2561;Type=deletion;Left=chr7:89648345-89648822;Right=chr7:89650537-89651007
chr7	CG	SV	93254877	93261447	19	.	.	ID=2559;Type=deletion;Left=chr7:93254877-93255050+;Right=chr7:93260941-93261447+;Distance=6064;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67308864 (chr7:93254877-93260941);Frequency=0.94
chr7	CG	SV	93254877	93255050	19	+	.	ID=2559;Type=deletion;Left=chr7:93254877-93255050;Right=chr7:93260941-93261447
chr7	CG	SV	93260941	93261447	19	+	.	ID=2559;Type=deletion;Left=chr7:93254877-93255050;Right=chr7:93260941-93261447
chr7	CG	SV	93379752	93380883	13	.	.	ID=2558;Type=deletion;Left=chr7:93379752-93380347+;Right=chr7:93380475-93380883+;Distance=723;DiscordantMatePairAlignments=13;LeftRepeat=L2:LINE:L2;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs71879725 (chr7:93379752-93380472);Frequency=0.82
chr7	CG	SV	93379752	93380347	13	+	.	ID=2558;Type=deletion;Left=chr7:93379752-93380347;Right=chr7:93380475-93380883
chr7	CG	SV	93380475	93380883	13	+	.	ID=2558;Type=deletion;Left=chr7:93379752-93380347;Right=chr7:93380475-93380883
chr7	CG	SV	96313837	96320508	113	.	.	ID=2556;Type=deletion;Left=chr7:96313837-96314361+;Right=chr7:96319945-96320508+;Distance=6108;DiscordantMatePairAlignments=113;LeftRepeat=Self chain;T-rich:Low_complexity:Low_complexity;RightRepeat=L1MD2:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71014064 (chr7:96313837-96319945);Frequency=1.00
chr7	CG	SV	96313837	96314361	113	+	.	ID=2556;Type=deletion;Left=chr7:96313837-96314361;Right=chr7:96319945-96320508
chr7	CG	SV	96319945	96320508	113	+	.	ID=2556;Type=deletion;Left=chr7:96313837-96314361;Right=chr7:96319945-96320508
chr7	CG	SV	100388047	100389146	15	.	.	ID=1050;Type=tandem-duplication;Left=chr7:100388047-100388521-;Right=chr7:100388753-100389146-;Distance=625;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;Tandem period 51;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	100388047	100388521	15	-	.	ID=1050;Type=tandem-duplication;Left=chr7:100388047-100388521;Right=chr7:100388753-100389146
chr7	CG	SV	100388753	100389146	15	-	.	ID=1050;Type=tandem-duplication;Left=chr7:100388047-100388521;Right=chr7:100388753-100389146
chr7	CG	SV	100400459	100401441	27	.	.	ID=2553;Type=deletion;Left=chr7:100400459-100400995+;Right=chr7:100401199-100401441+;Distance=740;DiscordantMatePairAlignments=27;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_001164462:+;RightGenes=NM_001164462:+;XRef=;Frequency=1.00
chr7	CG	SV	100400459	100400995	27	+	.	ID=2553;Type=deletion;Left=chr7:100400459-100400995;Right=chr7:100401199-100401441
chr7	CG	SV	100401199	100401441	27	+	.	ID=2553;Type=deletion;Left=chr7:100400459-100400995;Right=chr7:100401199-100401441
chr7	CG	SV	100787986	100790965	38	.	.	ID=2552;Type=deletion;Left=chr7:100787986-100788412+;Right=chr7:100790532-100790965+;Distance=2546;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs66862807 (chr7:100787986-100790532);Frequency=0.41
chr7	CG	SV	100787986	100788412	38	+	.	ID=2552;Type=deletion;Left=chr7:100787986-100788412;Right=chr7:100790532-100790965
chr7	CG	SV	100790532	100790965	38	+	.	ID=2552;Type=deletion;Left=chr7:100787986-100788412;Right=chr7:100790532-100790965
chr7	CG	SV	100845908	100847433	54	.	.	ID=2551;Type=deletion;Left=chr7:100845908-100846440+;Right=chr7:100847017-100847433+;Distance=1109;DiscordantMatePairAlignments=54;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_133457:+;RightGenes=NM_133457:+;XRef=;Frequency=0.29
chr7	CG	SV	100845908	100846440	54	+	.	ID=2551;Type=deletion;Left=chr7:100845908-100846440;Right=chr7:100847017-100847433
chr7	CG	SV	100847017	100847433	54	+	.	ID=2551;Type=deletion;Left=chr7:100845908-100846440;Right=chr7:100847017-100847433
chr7	CG	SV	109223925	109241422	19	.	.	ID=2545;Type=deletion;Left=chr7:109223925-109224376+;Right=chr7:109241137-109241422+;Distance=17212;DiscordantMatePairAlignments=19;LeftRepeat=L1PA4:LINE:L1;RightRepeat=L1MD2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr7	CG	SV	109223925	109224376	19	+	.	ID=2545;Type=deletion;Left=chr7:109223925-109224376;Right=chr7:109241137-109241422
chr7	CG	SV	109241137	109241422	19	+	.	ID=2545;Type=deletion;Left=chr7:109223925-109224376;Right=chr7:109241137-109241422
chr7	CG	SV	110392640	110517844	31	.	.	ID=2544;Type=deletion;Left=chr7:110392640-110393125+;Right=chr7:110517355-110517844+;Distance=124715;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=;LeftGenes=NM_032549:-;RightGenes=NM_032549:-;XRef=;Frequency=0.00
chr7	CG	SV	110392640	110393125	31	+	.	ID=2544;Type=deletion;Left=chr7:110392640-110393125;Right=chr7:110517355-110517844
chr7	CG	SV	110517355	110517844	31	+	.	ID=2544;Type=deletion;Left=chr7:110392640-110393125;Right=chr7:110517355-110517844
chr7	CG	SV	113203400	113209987	122	.	.	ID=2543;Type=deletion;Left=chr7:113203400-113204022+;Right=chr7:113209446-113209987+;Distance=6046;DiscordantMatePairAlignments=122;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66950453 (chr7:113203397-113209443);Frequency=1.00
chr7	CG	SV	113203400	113204022	122	+	.	ID=2543;Type=deletion;Left=chr7:113203400-113204022;Right=chr7:113209446-113209987
chr7	CG	SV	113209446	113209987	122	+	.	ID=2543;Type=deletion;Left=chr7:113203400-113204022;Right=chr7:113209446-113209987
chr7	CG	SV	116629253	116630136	13	.	.	ID=2541;Type=deletion;Left=chr7:116629253-116629984+;Right=chr7:116629564-116630136+;Distance=311;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=NM_018412:+;NM_021908:+;NR_002332:+;RightGenes=NM_018412:+;NM_021908:+;NR_002332:+;XRef=rs10522424 (chr7:116629253-116629564);Frequency=0.71
chr7	CG	SV	116629253	116629984	13	+	.	ID=2541;Type=deletion;Left=chr7:116629253-116629984;Right=chr7:116629564-116630136
chr7	CG	SV	116629564	116630136	13	+	.	ID=2541;Type=deletion;Left=chr7:116629253-116629984;Right=chr7:116629564-116630136
chr7	CG	SV	118131051	118131726	11	.	.	ID=2540;Type=deletion;Left=chr7:118131051-118131690+;Right=chr7:118131406-118131726+;Distance=355;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=ERVL-E:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	118131051	118131690	11	+	.	ID=2540;Type=deletion;Left=chr7:118131051-118131690;Right=chr7:118131406-118131726
chr7	CG	SV	118131406	118131726	11	+	.	ID=2540;Type=deletion;Left=chr7:118131051-118131690;Right=chr7:118131406-118131726
chr7	CG	SV	118618484	118622604	50	.	.	ID=2539;Type=deletion;Left=chr7:118618484-118618918+;Right=chr7:118621990-118622604+;Distance=3506;DiscordantMatePairAlignments=50;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66490609 (chr7:118618495-118621990);Frequency=0.53
chr7	CG	SV	118618484	118618918	50	+	.	ID=2539;Type=deletion;Left=chr7:118618484-118618918;Right=chr7:118621990-118622604
chr7	CG	SV	118621990	118622604	50	+	.	ID=2539;Type=deletion;Left=chr7:118618484-118618918;Right=chr7:118621990-118622604
chr7	CG	SV	125833125	125839109	54	.	.	ID=2537;Type=deletion;Left=chr7:125833125-125833651+;Right=chr7:125838686-125839109+;Distance=5561;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=MLT1J:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67488125 (chr7:125833125-125838686);Frequency=0.94
chr7	CG	SV	125833125	125833651	54	+	.	ID=2537;Type=deletion;Left=chr7:125833125-125833651;Right=chr7:125838686-125839109
chr7	CG	SV	125838686	125839109	54	+	.	ID=2537;Type=deletion;Left=chr7:125833125-125833651;Right=chr7:125838686-125839109
chr7	CG	SV	133435543	133449264	23	.	.	ID=2534;Type=deletion;Left=chr7:133435543-133435862+;Right=chr7:133448872-133449264+;Distance=13329;DiscordantMatePairAlignments=23;LeftRepeat=MLT1C:LTR:MaLR;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr7	CG	SV	133435543	133435862	23	+	.	ID=2534;Type=deletion;Left=chr7:133435543-133435862;Right=chr7:133448872-133449264
chr7	CG	SV	133448872	133449264	23	+	.	ID=2534;Type=deletion;Left=chr7:133435543-133435862;Right=chr7:133448872-133449264
chr7	CG	SV	137946996	137948288	26	.	.	ID=2531;Type=deletion;Left=chr7:137946996-137947267+;Right=chr7:137947763-137948288+;Distance=767;DiscordantMatePairAlignments=26;LeftRepeat=L1MA5A:LINE:L1;RightRepeat=;LeftGenes=NM_001139456:-;NM_174959:-;RightGenes=NM_001139456:-;NM_174959:-;XRef=rs72467481 (chr7:137946996-137947763);Frequency=0.82
chr7	CG	SV	137946996	137947267	26	+	.	ID=2531;Type=deletion;Left=chr7:137946996-137947267;Right=chr7:137947763-137948288
chr7	CG	SV	137947763	137948288	26	+	.	ID=2531;Type=deletion;Left=chr7:137946996-137947267;Right=chr7:137947763-137948288
chr7	CG	SV	141407040	141433834	15	.	.	ID=2526;Type=deletion;Left=chr7:141407040-141407325+;Right=chr7:141433384-141433834+;Distance=26344;DiscordantMatePairAlignments=15;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_004668:+;RightGenes=NM_004668:+;XRef=;Frequency=0.47
chr7	CG	SV	141407040	141407325	15	+	.	ID=2526;Type=deletion;Left=chr7:141407040-141407325;Right=chr7:141433384-141433834
chr7	CG	SV	141433384	141433834	15	+	.	ID=2526;Type=deletion;Left=chr7:141407040-141407325;Right=chr7:141433384-141433834
chr7	CG	SV	144547817	144552761	33	.	.	ID=2523;Type=deletion;Left=chr7:144547817-144548398+;Right=chr7:144552334-144552761+;Distance=4517;DiscordantMatePairAlignments=33;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr7	CG	SV	144547817	144548398	33	+	.	ID=2523;Type=deletion;Left=chr7:144547817-144548398;Right=chr7:144552334-144552761
chr7	CG	SV	144552334	144552761	33	+	.	ID=2523;Type=deletion;Left=chr7:144547817-144548398;Right=chr7:144552334-144552761
chr7	CG	SV	144634401	144650139	41	.	.	ID=2522;Type=deletion;Left=chr7:144634401-144634763+;Right=chr7:144649787-144650139+;Distance=15386;DiscordantMatePairAlignments=41;LeftRepeat=;RightRepeat=HERV16:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	144634401	144634763	41	+	.	ID=2522;Type=deletion;Left=chr7:144634401-144634763;Right=chr7:144649787-144650139
chr7	CG	SV	144649787	144650139	41	+	.	ID=2522;Type=deletion;Left=chr7:144634401-144634763;Right=chr7:144649787-144650139
chr7	CG	SV	150349957	150350587	13	.	.	ID=2520;Type=deletion;Left=chr7:150349957-150350431+;Right=chr7:150350444-150350587+;Distance=487;DiscordantMatePairAlignments=13;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_173681:-;RightGenes=NM_173681:-;XRef=;Frequency=0.18
chr7	CG	SV	150349957	150350431	13	+	.	ID=2520;Type=deletion;Left=chr7:150349957-150350431;Right=chr7:150350444-150350587
chr7	CG	SV	150350444	150350587	13	+	.	ID=2520;Type=deletion;Left=chr7:150349957-150350431;Right=chr7:150350444-150350587
chr7	CG	SV	151795728	151796886	34	.	.	ID=2518;Type=deletion;Left=chr7:151795728-151796146+;Right=chr7:151796399-151796886+;Distance=671;DiscordantMatePairAlignments=34;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	151795728	151796146	34	+	.	ID=2518;Type=deletion;Left=chr7:151795728-151796146;Right=chr7:151796399-151796886
chr7	CG	SV	151796399	151796886	34	+	.	ID=2518;Type=deletion;Left=chr7:151795728-151796146;Right=chr7:151796399-151796886
chr7	CG	SV	151876521	151877500	17	.	.	ID=2517;Type=deletion;Left=chr7:151876521-151877239+;Right=chr7:151877217-151877500+;Distance=696;DiscordantMatePairAlignments=17;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=FLAM_C:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs68013241 (chr7:151876302-151877263);Frequency=0.71
chr7	CG	SV	151876521	151877239	17	+	.	ID=2517;Type=deletion;Left=chr7:151876521-151877239;Right=chr7:151877217-151877500
chr7	CG	SV	151877217	151877500	17	+	.	ID=2517;Type=deletion;Left=chr7:151876521-151877239;Right=chr7:151877217-151877500
chr7	CG	SV	151912656	151915639	13	.	.	ID=2516;Type=deletion;Left=chr7:151912656-151912994+;Right=chr7:151915268-151915639+;Distance=2612;DiscordantMatePairAlignments=13;LeftRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;RightRepeat=L1MC3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr7	CG	SV	151912656	151912994	13	+	.	ID=2516;Type=deletion;Left=chr7:151912656-151912994;Right=chr7:151915268-151915639
chr7	CG	SV	151915268	151915639	13	+	.	ID=2516;Type=deletion;Left=chr7:151912656-151912994;Right=chr7:151915268-151915639
chr7	CG	SV	152941071	152942185	59	.	.	ID=2515;Type=deletion;Left=chr7:152941071-152941460+;Right=chr7:152941761-152942185+;Distance=690;DiscordantMatePairAlignments=59;LeftRepeat=Self chain;RightRepeat=L1MC4:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71016803 (chr7:152941071-152941761);Frequency=1.00
chr7	CG	SV	152941071	152941460	59	+	.	ID=2515;Type=deletion;Left=chr7:152941071-152941460;Right=chr7:152941761-152942185
chr7	CG	SV	152941761	152942185	59	+	.	ID=2515;Type=deletion;Left=chr7:152941071-152941460;Right=chr7:152941761-152942185
chr7	CG	SV	153784756	153786174	25	.	.	ID=2514;Type=deletion;Left=chr7:153784756-153785267+;Right=chr7:153786015-153786174+;Distance=1259;DiscordantMatePairAlignments=25;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=NM_001039350:+;NM_001936:+;NM_130797:+;RightGenes=NM_001039350:+;NM_001936:+;NM_130797:+;XRef=rs67517515 (chr7:153784744-153786003);Frequency=0.94
chr7	CG	SV	153784756	153785267	25	+	.	ID=2514;Type=deletion;Left=chr7:153784756-153785267;Right=chr7:153786015-153786174
chr7	CG	SV	153786015	153786174	25	+	.	ID=2514;Type=deletion;Left=chr7:153784756-153785267;Right=chr7:153786015-153786174
chr7	CG	SV	154022914	154030971	20	.	.	ID=2513;Type=deletion;Left=chr7:154022914-154023283+;Right=chr7:154030766-154030971+;Distance=7852;DiscordantMatePairAlignments=20;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_001039350:+;NM_001936:+;NM_130797:+;RightGenes=NM_001039350:+;NM_001936:+;NM_130797:+;XRef=rs71016805 (chr7:154022834-154030686);Frequency=0.53
chr7	CG	SV	154022914	154023283	20	+	.	ID=2513;Type=deletion;Left=chr7:154022914-154023283;Right=chr7:154030766-154030971
chr7	CG	SV	154030766	154030971	20	+	.	ID=2513;Type=deletion;Left=chr7:154022914-154023283;Right=chr7:154030766-154030971
chr7	CG	SV	154507050	154511559	109	.	.	ID=1044;Type=distal-duplication;Left=chr7:154507050-154507485-;Right=chr7:154511028-154511559-;Distance=4074;DiscordantMatePairAlignments=109;LeftRepeat=;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=NM_024012:+;RightGenes=;XRef=;Frequency=0.35
chr7	CG	SV	154507050	154507485	109	-	.	ID=1044;Type=distal-duplication;Left=chr7:154507050-154507485;Right=chr7:154511028-154511559
chr7	CG	SV	154511028	154511559	109	-	.	ID=1044;Type=distal-duplication;Left=chr7:154507050-154507485;Right=chr7:154511028-154511559
chr7	CG	SV	154507932	154512065	63	.	.	ID=2510;Type=distal-duplication;Left=chr7:154507932-154508373+;Right=chr7:154511564-154512065+;Distance=3632;DiscordantMatePairAlignments=63;LeftRepeat=;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=NM_024012:+;RightGenes=;XRef=;Frequency=0.29
chr7	CG	SV	154507932	154508373	63	+	.	ID=2510;Type=distal-duplication;Left=chr7:154507932-154508373;Right=chr7:154511564-154512065
chr7	CG	SV	154511564	154512065	63	+	.	ID=2510;Type=distal-duplication;Left=chr7:154507932-154508373;Right=chr7:154511564-154512065
chr7	CG	SV	156789004	156790119	11	.	.	ID=2508;Type=deletion;Left=chr7:156789004-156789430+;Right=chr7:156789828-156790119+;Distance=824;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	156789004	156789430	11	+	.	ID=2508;Type=deletion;Left=chr7:156789004-156789430;Right=chr7:156789828-156790119
chr7	CG	SV	156789828	156790119	11	+	.	ID=2508;Type=deletion;Left=chr7:156789004-156789430;Right=chr7:156789828-156790119
chr7	CG	SV	157722237	157723732	237	.	.	ID=2506;Type=deletion;Left=chr7:157722237-157722827+;Right=chr7:157723211-157723732+;Distance=974;DiscordantMatePairAlignments=237;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_002847:-;NM_130842:-;NM_130843:-;RightGenes=NM_002847:-;NM_130842:-;NM_130843:-;XRef=rs67815723 (chr7:157722235-157723209);Frequency=0.94
chr7	CG	SV	157722237	157722827	237	+	.	ID=2506;Type=deletion;Left=chr7:157722237-157722827;Right=chr7:157723211-157723732
chr7	CG	SV	157723211	157723732	237	+	.	ID=2506;Type=deletion;Left=chr7:157722237-157722827;Right=chr7:157723211-157723732
chr7	CG	SV	157739415	157740560	72	.	.	ID=2505;Type=deletion;Left=chr7:157739415-157739963+;Right=chr7:157740158-157740560+;Distance=743;DiscordantMatePairAlignments=72;LeftRepeat=Self chain;Tandem period 74;RightRepeat=Self chain;Tandem period 74;LeftGenes=NM_002847:-;NM_130842:-;NM_130843:-;RightGenes=NM_002847:-;NM_130842:-;NM_130843:-;XRef=rs67809280 (chr7:157739419-157740162);Frequency=0.76
chr7	CG	SV	157739415	157739963	72	+	.	ID=2505;Type=deletion;Left=chr7:157739415-157739963;Right=chr7:157740158-157740560
chr7	CG	SV	157740158	157740560	72	+	.	ID=2505;Type=deletion;Left=chr7:157739415-157739963;Right=chr7:157740158-157740560
chr7	CG	SV	158691776	158692841	19	.	.	ID=2502;Type=deletion;Left=chr7:158691776-158692149+;Right=chr7:158692612-158692841+;Distance=836;DiscordantMatePairAlignments=19;LeftRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;Tandem period 32;Tandem period 61;RightRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;Tandem period 32;Tandem period 61;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr7	CG	SV	158691776	158692149	19	+	.	ID=2502;Type=deletion;Left=chr7:158691776-158692149;Right=chr7:158692612-158692841
chr7	CG	SV	158692612	158692841	19	+	.	ID=2502;Type=deletion;Left=chr7:158691776-158692149;Right=chr7:158692612-158692841
chr7	CG	SV	158803030	158817861	67	.	.	ID=2501;Type=deletion;Left=chr7:158803030-158803860+;Right=chr7:158817340-158817861+;Distance=14310;DiscordantMatePairAlignments=67;LeftRepeat=MER57A:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr7	CG	SV	158803030	158803860	67	+	.	ID=2501;Type=deletion;Left=chr7:158803030-158803860;Right=chr7:158817340-158817861
chr7	CG	SV	158817340	158817861	67	+	.	ID=2501;Type=deletion;Left=chr7:158803030-158803860;Right=chr7:158817340-158817861
chr8	CG	SV	584397	589965	139	.	.	ID=2500;Type=deletion;Left=chr8:584397-584912+;Right=chr8:589414-589965+;Distance=5017;DiscordantMatePairAlignments=139;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66630184 (chr8:584400-589414);Frequency=0.88
chr8	CG	SV	584397	584912	139	+	.	ID=2500;Type=deletion;Left=chr8:584397-584912;Right=chr8:589414-589965
chr8	CG	SV	589414	589965	139	+	.	ID=2500;Type=deletion;Left=chr8:584397-584912;Right=chr8:589414-589965
chr8	CG	SV	951245	955354	20	.	.	ID=2498;Type=deletion;Left=chr8:951245-951765+;Right=chr8:955034-955354+;Distance=3789;DiscordantMatePairAlignments=20;LeftRepeat=SegDup;Self chain;Tandem period 33;Tandem period 64;Tandem period 97;RightRepeat=Self chain;Tandem period 33;Tandem period 64;Tandem period 97;LeftGenes=;RightGenes=;XRef=rs71855433 (chr8:950994-954851);Frequency=0.35
chr8	CG	SV	951245	951765	20	+	.	ID=2498;Type=deletion;Left=chr8:951245-951765;Right=chr8:955034-955354
chr8	CG	SV	955034	955354	20	+	.	ID=2498;Type=deletion;Left=chr8:951245-951765;Right=chr8:955034-955354
chr8	CG	SV	1101285	1101728	22	.	.	ID=1042;Type=tandem-duplication;Left=chr8:1101285-1101500-;Right=chr8:1101607-1101728-;Distance=228;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 45;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr8	CG	SV	1101285	1101500	22	-	.	ID=1042;Type=tandem-duplication;Left=chr8:1101285-1101500;Right=chr8:1101607-1101728
chr8	CG	SV	1101607	1101728	22	-	.	ID=1042;Type=tandem-duplication;Left=chr8:1101285-1101500;Right=chr8:1101607-1101728
chr8	CG	SV	1310793	1311898	13	.	.	ID=2496;Type=deletion;Left=chr8:1310793-1311109+;Right=chr8:1311711-1311898+;Distance=918;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 54;RightRepeat=Self chain;Tandem period 54;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr8	CG	SV	1310793	1311109	13	+	.	ID=2496;Type=deletion;Left=chr8:1310793-1311109;Right=chr8:1311711-1311898
chr8	CG	SV	1311711	1311898	13	+	.	ID=2496;Type=deletion;Left=chr8:1310793-1311109;Right=chr8:1311711-1311898
chr8	CG	SV	1733872	1734777	111	.	.	ID=2495;Type=deletion;Left=chr8:1733872-1734477+;Right=chr8:1734357-1734777+;Distance=485;DiscordantMatePairAlignments=111;LeftRepeat=Self chain;Tandem period 37;RightRepeat=Self chain;Tandem period 37;LeftGenes=;RightGenes=;XRef=rs71843993 (chr8:1733872-1734353);Frequency=0.88
chr8	CG	SV	1733872	1734477	111	+	.	ID=2495;Type=deletion;Left=chr8:1733872-1734477;Right=chr8:1734357-1734777
chr8	CG	SV	1734357	1734777	111	+	.	ID=2495;Type=deletion;Left=chr8:1733872-1734477;Right=chr8:1734357-1734777
chr8	CG	SV	1779816	1780038	24	.	.	ID=1041;Type=tandem-duplication;Left=chr8:1779816-1779913-;Right=chr8:1779936-1780038-;Distance=125;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;Tandem period 43;RightRepeat=Self chain;LeftGenes=NM_014629:+;RightGenes=NM_014629:+;XRef=;Frequency=0.94
chr8	CG	SV	1779816	1779913	24	-	.	ID=1041;Type=tandem-duplication;Left=chr8:1779816-1779913;Right=chr8:1779936-1780038
chr8	CG	SV	1779936	1780038	24	-	.	ID=1041;Type=tandem-duplication;Left=chr8:1779816-1779913;Right=chr8:1779936-1780038
chr8	CG	SV	2166339	2167159	12	.	.	ID=2494;Type=deletion;Left=chr8:2166339-2167065+;Right=chr8:2166662-2167159+;Distance=323;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71981345 (chr8:2166329-2166652);Frequency=0.12
chr8	CG	SV	2166339	2167065	12	+	.	ID=2494;Type=deletion;Left=chr8:2166339-2167065;Right=chr8:2166662-2167159
chr8	CG	SV	2166662	2167159	12	+	.	ID=2494;Type=deletion;Left=chr8:2166339-2167065;Right=chr8:2166662-2167159
chr8	CG	SV	2202851	2203871	45	.	.	ID=2493;Type=deletion;Left=chr8:2202851-2203438+;Right=chr8:2203547-2203871+;Distance=696;DiscordantMatePairAlignments=45;LeftRepeat=Self chain;Tandem period 87;RightRepeat=Self chain;Tandem period 87;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	2202851	2203438	45	+	.	ID=2493;Type=deletion;Left=chr8:2202851-2203438;Right=chr8:2203547-2203871
chr8	CG	SV	2203547	2203871	45	+	.	ID=2493;Type=deletion;Left=chr8:2202851-2203438;Right=chr8:2203547-2203871
chr8	CG	SV	8423458	8424558	19	.	.	ID=2490;Type=deletion;Left=chr8:8423458-8423966+;Right=chr8:8424372-8424558+;Distance=914;DiscordantMatePairAlignments=19;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=FRAM:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72459952 (chr8:8423440-8424354);Frequency=0.82
chr8	CG	SV	8423458	8423966	19	+	.	ID=2490;Type=deletion;Left=chr8:8423458-8423966;Right=chr8:8424372-8424558
chr8	CG	SV	8424372	8424558	19	+	.	ID=2490;Type=deletion;Left=chr8:8423458-8423966;Right=chr8:8424372-8424558
chr8	CG	SV	8764151	8766633	53	.	.	ID=2489;Type=deletion;Left=chr8:8764151-8764638+;Right=chr8:8766092-8766633+;Distance=1941;DiscordantMatePairAlignments=53;LeftRepeat=Self chain;RightRepeat=MIRb:SINE:MIR;Self chain;LeftGenes=NM_004225:-;RightGenes=NM_004225:-;XRef=;Frequency=0.00
chr8	CG	SV	8764151	8764638	53	+	.	ID=2489;Type=deletion;Left=chr8:8764151-8764638;Right=chr8:8766092-8766633
chr8	CG	SV	8766092	8766633	53	+	.	ID=2489;Type=deletion;Left=chr8:8764151-8764638;Right=chr8:8766092-8766633
chr8	CG	SV	11282971	11285129	58	.	.	ID=2488;Type=deletion;Left=chr8:11282971-11283576+;Right=chr8:11284620-11285129+;Distance=1649;DiscordantMatePairAlignments=58;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_026814:+;RightGenes=NR_026814:+;XRef=;Frequency=0.82
chr8	CG	SV	11282971	11283576	58	+	.	ID=2488;Type=deletion;Left=chr8:11282971-11283576;Right=chr8:11284620-11285129
chr8	CG	SV	11284620	11285129	58	+	.	ID=2488;Type=deletion;Left=chr8:11282971-11283576;Right=chr8:11284620-11285129
chr8	CG	SV	16866251	16867126	15	.	.	ID=2484;Type=deletion;Left=chr8:16866251-16866799+;Right=chr8:16866621-16867126+;Distance=370;DiscordantMatePairAlignments=15;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=ERVL-B4:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs10526511 (chr8:16866250-16866620);Frequency=0.59
chr8	CG	SV	16866251	16866799	15	+	.	ID=2484;Type=deletion;Left=chr8:16866251-16866799;Right=chr8:16866621-16867126
chr8	CG	SV	16866621	16867126	15	+	.	ID=2484;Type=deletion;Left=chr8:16866251-16866799;Right=chr8:16866621-16867126
chr8	CG	SV	18498900	18500644	70	.	.	ID=2483;Type=deletion;Left=chr8:18498900-18499375+;Right=chr8:18500233-18500644+;Distance=1333;DiscordantMatePairAlignments=70;LeftRepeat=L1HS:LINE:L1;L1M3:LINE:L1;RightRepeat=L1M3:LINE:L1;LeftGenes=NM_015310:-;NM_206909:-;RightGenes=NM_015310:-;NM_206909:-;XRef=rs71189488 (chr8:18498900-18500233);Frequency=1.00
chr8	CG	SV	18498900	18499375	70	+	.	ID=2483;Type=deletion;Left=chr8:18498900-18499375;Right=chr8:18500233-18500644
chr8	CG	SV	18500233	18500644	70	+	.	ID=2483;Type=deletion;Left=chr8:18498900-18499375;Right=chr8:18500233-18500644
chr8	CG	SV	18695738	18697195	112	.	.	ID=2482;Type=deletion;Left=chr8:18695738-18696160+;Right=chr8:18696712-18697195+;Distance=974;DiscordantMatePairAlignments=112;LeftRepeat=LTR5_Hs:LTR:ERVK;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=NM_015310:-;NM_206909:-;RightGenes=NM_015310:-;NM_206909:-;XRef=rs67390803 (chr8:18695731-18696705);Frequency=1.00
chr8	CG	SV	18695738	18696160	112	+	.	ID=2482;Type=deletion;Left=chr8:18695738-18696160;Right=chr8:18696712-18697195
chr8	CG	SV	18696712	18697195	112	+	.	ID=2482;Type=deletion;Left=chr8:18695738-18696160;Right=chr8:18696712-18697195
chr8	CG	SV	25122602	25127051	92	.	.	ID=2480;Type=deletion;Left=chr8:25122602-25123093+;Right=chr8:25126576-25127051+;Distance=3974;DiscordantMatePairAlignments=92;LeftRepeat=;RightRepeat=;LeftGenes=NM_024940:+;RightGenes=NM_024940:+;XRef=rs67659343 (chr8:25122602-25126576);Frequency=1.00
chr8	CG	SV	25122602	25123093	92	+	.	ID=2480;Type=deletion;Left=chr8:25122602-25123093;Right=chr8:25126576-25127051
chr8	CG	SV	25126576	25127051	92	+	.	ID=2480;Type=deletion;Left=chr8:25122602-25123093;Right=chr8:25126576-25127051
chr8	CG	SV	32799551	32811383	114	.	.	ID=2477;Type=deletion;Left=chr8:32799551-32800085+;Right=chr8:32810807-32811383+;Distance=11256;DiscordantMatePairAlignments=114;LeftRepeat=MLT1I:LTR:MaLR;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	32799551	32800085	114	+	.	ID=2477;Type=deletion;Left=chr8:32799551-32800085;Right=chr8:32810807-32811383
chr8	CG	SV	32810807	32811383	114	+	.	ID=2477;Type=deletion;Left=chr8:32799551-32800085;Right=chr8:32810807-32811383
chr8	CG	SV	37170043	37171707	155	.	.	ID=2476;Type=deletion;Left=chr8:37170043-37170461+;Right=chr8:37171017-37171707+;Distance=974;DiscordantMatePairAlignments=155;LeftRepeat=LTR5_Hs:LTR:ERVK;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67176554 (chr8:37170037-37171011);Frequency=1.00
chr8	CG	SV	37170043	37170461	155	+	.	ID=2476;Type=deletion;Left=chr8:37170043-37170461;Right=chr8:37171017-37171707
chr8	CG	SV	37171017	37171707	155	+	.	ID=2476;Type=deletion;Left=chr8:37170043-37170461;Right=chr8:37171017-37171707
chr8	CG	SV	42309648	42313868	24	.	.	ID=2472;Type=deletion;Left=chr8:42309648-42310140+;Right=chr8:42313611-42313868+;Distance=3963;DiscordantMatePairAlignments=24;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67189271 (chr8:42309546-42313509);Frequency=1.00
chr8	CG	SV	42309648	42310140	24	+	.	ID=2472;Type=deletion;Left=chr8:42309648-42310140;Right=chr8:42313611-42313868
chr8	CG	SV	42313611	42313868	24	+	.	ID=2472;Type=deletion;Left=chr8:42309648-42310140;Right=chr8:42313611-42313868
chr8	CG	SV	47636566	87780064	17	.	.	ID=295;Type=probable-inversion;Left=chr8:47636566-47636898-;Right=chr8:87779755-87780064+;Distance=40142857;DiscordantMatePairAlignments=17;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_019098:-;XRef=;Frequency=0.59
chr8	CG	SV	47636566	47636898	17	-	.	ID=295;Type=probable-inversion;Left=chr8:47636566-47636898;Right=chr8:87779755-87780064
chr8	CG	SV	87779755	87780064	17	-	.	ID=295;Type=probable-inversion;Left=chr8:47636566-47636898;Right=chr8:87779755-87780064
chr8	CG	SV	58278344	58285598	87	.	.	ID=1036;Type=complex;Left=chr8:58278344-58278874-;Right=chr8:58285025-58285598-;Distance=6724;DiscordantMatePairAlignments=87;LeftRepeat=MER50:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58278344	58278874	87	-	.	ID=1036;Type=complex;Left=chr8:58278344-58278874;Right=chr8:58285025-58285598
chr8	CG	SV	58285025	58285598	87	-	.	ID=1036;Type=complex;Left=chr8:58278344-58278874;Right=chr8:58285025-58285598
chr8	CG	SV	58279452	58281176	52	.	.	ID=2466;Type=complex;Left=chr8:58279452-58279942+;Right=chr8:58280826-58281176+;Distance=1374;DiscordantMatePairAlignments=52;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58279452	58279942	52	+	.	ID=2466;Type=complex;Left=chr8:58279452-58279942;Right=chr8:58280826-58281176
chr8	CG	SV	58280826	58281176	52	+	.	ID=2466;Type=complex;Left=chr8:58279452-58279942;Right=chr8:58280826-58281176
chr8	CG	SV	58280385	58290572	88	.	.	ID=1033;Type=complex;Left=chr8:58280385-58280822-;Right=chr8:58290095-58290572-;Distance=9750;DiscordantMatePairAlignments=88;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58280385	58280822	88	-	.	ID=1033;Type=complex;Left=chr8:58280385-58280822;Right=chr8:58290095-58290572
chr8	CG	SV	58290095	58290572	88	-	.	ID=1033;Type=complex;Left=chr8:58280385-58280822;Right=chr8:58290095-58290572
chr8	CG	SV	58285599	58290531	286	.	.	ID=2465;Type=complex;Left=chr8:58285599-58286028+;Right=chr8:58289978-58290531+;Distance=4379;DiscordantMatePairAlignments=286;LeftRepeat=Self chain;RightRepeat=MER50:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58285599	58286028	286	+	.	ID=2465;Type=complex;Left=chr8:58285599-58286028;Right=chr8:58289978-58290531
chr8	CG	SV	58289978	58290531	286	+	.	ID=2465;Type=complex;Left=chr8:58285599-58286028;Right=chr8:58289978-58290531
chr8	CG	SV	58334573	58335451	17	.	.	ID=1032;Type=tandem-duplication;Left=chr8:58334573-58334981-;Right=chr8:58335026-58335451-;Distance=470;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr8	CG	SV	58334573	58334981	17	-	.	ID=1032;Type=tandem-duplication;Left=chr8:58334573-58334981;Right=chr8:58335026-58335451
chr8	CG	SV	58335026	58335451	17	-	.	ID=1032;Type=tandem-duplication;Left=chr8:58334573-58334981;Right=chr8:58335026-58335451
chr8	CG	SV	62197914	62198974	50	.	.	ID=2461;Type=deletion;Left=chr8:62197914-62198522+;Right=chr8:62198446-62198974+;Distance=532;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr8	CG	SV	62197914	62198522	50	+	.	ID=2461;Type=deletion;Left=chr8:62197914-62198522;Right=chr8:62198446-62198974
chr8	CG	SV	62198446	62198974	50	+	.	ID=2461;Type=deletion;Left=chr8:62197914-62198522;Right=chr8:62198446-62198974
chr8	CG	SV	73950326	73957015	94	.	.	ID=2458;Type=deletion;Left=chr8:73950326-73950951+;Right=chr8:73956384-73957015+;Distance=6058;DiscordantMatePairAlignments=94;LeftRepeat=;RightRepeat=;LeftGenes=NM_004770:+;RightGenes=NM_004770:+;XRef=rs71640573 (chr8:73950319-73956377);Frequency=1.00
chr8	CG	SV	73950326	73950951	94	+	.	ID=2458;Type=deletion;Left=chr8:73950326-73950951;Right=chr8:73956384-73957015
chr8	CG	SV	73956384	73957015	94	+	.	ID=2458;Type=deletion;Left=chr8:73950326-73950951;Right=chr8:73956384-73957015
chr8	CG	SV	75525426	75529952	30	.	.	ID=2457;Type=deletion;Left=chr8:75525426-75525760+;Right=chr8:75529517-75529952+;Distance=4091;DiscordantMatePairAlignments=30;LeftRepeat=L1MEb:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr8	CG	SV	75525426	75525760	30	+	.	ID=2457;Type=deletion;Left=chr8:75525426-75525760;Right=chr8:75529517-75529952
chr8	CG	SV	75529517	75529952	30	+	.	ID=2457;Type=deletion;Left=chr8:75525426-75525760;Right=chr8:75529517-75529952
chr8	CG	SV	77499940	77501593	90	.	.	ID=2456;Type=deletion;Left=chr8:77499940-77500394+;Right=chr8:77500985-77501593+;Distance=1045;DiscordantMatePairAlignments=90;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66858940 (chr8:77499940-77500985);Frequency=0.94
chr8	CG	SV	77499940	77500394	90	+	.	ID=2456;Type=deletion;Left=chr8:77499940-77500394;Right=chr8:77500985-77501593
chr8	CG	SV	77500985	77501593	90	+	.	ID=2456;Type=deletion;Left=chr8:77499940-77500394;Right=chr8:77500985-77501593
chr8	CG	SV	97167264	97168139	15	.	.	ID=2450;Type=deletion;Left=chr8:97167264-97167812+;Right=chr8:97167616-97168139+;Distance=352;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs10528502 (chr8:97167264-97167616);Frequency=1.00
chr8	CG	SV	97167264	97167812	15	+	.	ID=2450;Type=deletion;Left=chr8:97167264-97167812;Right=chr8:97167616-97168139
chr8	CG	SV	97167616	97168139	15	+	.	ID=2450;Type=deletion;Left=chr8:97167264-97167812;Right=chr8:97167616-97168139
chr8	CG	SV	98664585	98665510	10	.	.	ID=2449;Type=deletion;Left=chr8:98664585-98665058+;Right=chr8:98664924-98665510+;Distance=339;DiscordantMatePairAlignments=10;LeftRepeat=Tandem T;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=rs35122468 (chr8:98664585-98664924);Frequency=1.00
chr8	CG	SV	98664585	98665058	10	+	.	ID=2449;Type=deletion;Left=chr8:98664585-98665058;Right=chr8:98664924-98665510
chr8	CG	SV	98664924	98665510	10	+	.	ID=2449;Type=deletion;Left=chr8:98664585-98665058;Right=chr8:98664924-98665510
chr8	CG	SV	103504715	103505131	15	.	.	ID=3632;Type=probable-inversion;Left=chr8:103504715-103505121+;Right=chr8:103504775-103505131-;Distance=416;DiscordantMatePairAlignments=15;LeftRepeat=AluSp:SINE:Alu;Self chain;RightRepeat=AluSp/q:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr8	CG	SV	103504715	103505121	15	+	.	ID=3632;Type=probable-inversion;Left=chr8:103504715-103505121;Right=chr8:103504775-103505131
chr8	CG	SV	103504775	103505131	15	+	.	ID=3632;Type=probable-inversion;Left=chr8:103504715-103505121;Right=chr8:103504775-103505131
chr8	CG	SV	112363228	112366732	52	.	.	ID=2443;Type=deletion;Left=chr8:112363228-112363678+;Right=chr8:112366316-112366732+;Distance=3088;DiscordantMatePairAlignments=52;LeftRepeat=;RightRepeat=MLT-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67753424 (chr8:112363228-112366316);Frequency=0.88
chr8	CG	SV	112363228	112363678	52	+	.	ID=2443;Type=deletion;Left=chr8:112363228-112363678;Right=chr8:112366316-112366732
chr8	CG	SV	112366316	112366732	52	+	.	ID=2443;Type=deletion;Left=chr8:112363228-112363678;Right=chr8:112366316-112366732
chr8	CG	SV	113154612	113155555	14	.	.	ID=2442;Type=deletion;Left=chr8:113154612-113155159+;Right=chr8:113154942-113155555+;Distance=330;DiscordantMatePairAlignments=14;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=L1M2:LINE:L1;LeftGenes=;RightGenes=;XRef=rs6150764 (chr8:113154612-113154942);Frequency=1.00
chr8	CG	SV	113154612	113155159	14	+	.	ID=2442;Type=deletion;Left=chr8:113154612-113155159;Right=chr8:113154942-113155555
chr8	CG	SV	113154942	113155555	14	+	.	ID=2442;Type=deletion;Left=chr8:113154612-113155159;Right=chr8:113154942-113155555
chr8	CG	SV	124526381	124651820	27	.	.	ID=2434;Type=deletion;Left=chr8:124526381-124526844+;Right=chr8:124651301-124651820+;Distance=124920;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	124526381	124526844	27	+	.	ID=2434;Type=deletion;Left=chr8:124526381-124526844;Right=chr8:124651301-124651820
chr8	CG	SV	124651301	124651820	27	+	.	ID=2434;Type=deletion;Left=chr8:124526381-124526844;Right=chr8:124651301-124651820
chr8	CG	SV	126664311	126670931	147	.	.	ID=2432;Type=deletion;Left=chr8:126664311-126665019+;Right=chr8:126670324-126670931+;Distance=6013;DiscordantMatePairAlignments=147;LeftRepeat=;RightRepeat=MER113:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs67657993 (chr8:126664311-126670324);Frequency=1.00
chr8	CG	SV	126664311	126665019	147	+	.	ID=2432;Type=deletion;Left=chr8:126664311-126665019;Right=chr8:126670324-126670931
chr8	CG	SV	126670324	126670931	147	+	.	ID=2432;Type=deletion;Left=chr8:126664311-126665019;Right=chr8:126670324-126670931
chr8	CG	SV	127261392	127264294	57	.	.	ID=2431;Type=deletion;Left=chr8:127261392-127262016+;Right=chr8:127263756-127264294+;Distance=2364;DiscordantMatePairAlignments=57;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72273669 (chr8:127261387-127263752);Frequency=0.59
chr8	CG	SV	127261392	127262016	57	+	.	ID=2431;Type=deletion;Left=chr8:127261392-127262016;Right=chr8:127263756-127264294
chr8	CG	SV	127263756	127264294	57	+	.	ID=2431;Type=deletion;Left=chr8:127261392-127262016;Right=chr8:127263756-127264294
chr8	CG	SV	127376930	127377384	59	-	.	ID=832;Type=complex;Left=chr8:127376930-127377384-;Right=chr19:60606090-60606504-;Distance=;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=NM_014501:-;XRef=;Frequency=0.00
chr19	CG	SV	60606090	60606504	59	-	.	ID=832;Type=complex;Left=chr8:127376930-127377384-;Right=chr19:60606090-60606504-;Distance=;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=NM_014501:-;XRef=;Frequency=0.00
chr8	CG	SV	128958553	128959226	232	+	.	ID=3501;Type=interchromosomal;Left=chr8:128958553-128959226+;Right=chrX:73123371-73123950-;Distance=;DiscordantMatePairAlignments=232;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NR_003367:+;RightGenes=NR_024582:+;XRef=;Frequency=0.00
chrX	CG	SV	73123371	73123950	232	+	.	ID=3501;Type=interchromosomal;Left=chr8:128958553-128959226+;Right=chrX:73123371-73123950-;Distance=;DiscordantMatePairAlignments=232;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NR_003367:+;RightGenes=NR_024582:+;XRef=;Frequency=0.00
chr8	CG	SV	129534343	129540962	111	.	.	ID=2430;Type=deletion;Left=chr8:129534343-129534935+;Right=chr8:129540456-129540962+;Distance=6113;DiscordantMatePairAlignments=111;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67264625 (chr8:129534335-129540448);Frequency=1.00
chr8	CG	SV	129534343	129534935	111	+	.	ID=2430;Type=deletion;Left=chr8:129534343-129534935;Right=chr8:129540456-129540962
chr8	CG	SV	129540456	129540962	111	+	.	ID=2430;Type=deletion;Left=chr8:129534343-129534935;Right=chr8:129540456-129540962
chr8	CG	SV	136784571	136787585	96	.	.	ID=1025;Type=tandem-duplication;Left=chr8:136784571-136785168-;Right=chr8:136787055-136787585-;Distance=2417;DiscordantMatePairAlignments=96;LeftRepeat=L1MEd:LINE:L1;RightRepeat=MLT2E:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	136784571	136785168	96	-	.	ID=1025;Type=tandem-duplication;Left=chr8:136784571-136785168;Right=chr8:136787055-136787585
chr8	CG	SV	136787055	136787585	96	-	.	ID=1025;Type=tandem-duplication;Left=chr8:136784571-136785168;Right=chr8:136787055-136787585
chr8	CG	SV	138812149	138813506	79	.	.	ID=2428;Type=deletion;Left=chr8:138812149-138812726+;Right=chr8:138813045-138813506+;Distance=896;DiscordantMatePairAlignments=79;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67866144 (chr8:138812147-138813043);Frequency=1.00
chr8	CG	SV	138812149	138812726	79	+	.	ID=2428;Type=deletion;Left=chr8:138812149-138812726;Right=chr8:138813045-138813506
chr8	CG	SV	138813045	138813506	79	+	.	ID=2428;Type=deletion;Left=chr8:138812149-138812726;Right=chr8:138813045-138813506
chr8	CG	SV	144127967	144128946	12	.	.	ID=2426;Type=deletion;Left=chr8:144127967-144128561+;Right=chr8:144128540-144128946+;Distance=573;DiscordantMatePairAlignments=12;LeftRepeat=(CAGGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 15;Tandem period 31;Tandem period 46;RightRepeat=Self chain;Tandem period 15;Tandem period 31;Tandem period 46;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr8	CG	SV	144127967	144128561	12	+	.	ID=2426;Type=deletion;Left=chr8:144127967-144128561;Right=chr8:144128540-144128946
chr8	CG	SV	144128540	144128946	12	+	.	ID=2426;Type=deletion;Left=chr8:144127967-144128561;Right=chr8:144128540-144128946
chr8	CG	SV	146027877	146029482	21	.	.	ID=2423;Type=deletion;Left=chr8:146027877-146028280+;Right=chr8:146028688-146029482+;Distance=811;DiscordantMatePairAlignments=21;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_003416:+;RightGenes=NM_003416:+;XRef=rs71976446 (chr8:146027825-146028636);Frequency=0.82
chr8	CG	SV	146027877	146028280	21	+	.	ID=2423;Type=deletion;Left=chr8:146027877-146028280;Right=chr8:146028688-146029482
chr8	CG	SV	146028688	146029482	21	+	.	ID=2423;Type=deletion;Left=chr8:146027877-146028280;Right=chr8:146028688-146029482
chr9	CG	SV	4366421	4367947	11	.	.	ID=2420;Type=deletion;Left=chr9:4366421-4367021+;Right=chr9:4367648-4367947+;Distance=1227;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr9	CG	SV	4366421	4367021	11	+	.	ID=2420;Type=deletion;Left=chr9:4366421-4367021;Right=chr9:4367648-4367947
chr9	CG	SV	4367648	4367947	11	+	.	ID=2420;Type=deletion;Left=chr9:4366421-4367021;Right=chr9:4367648-4367947
chr9	CG	SV	22989503	22990252	10	.	.	ID=2410;Type=deletion;Left=chr9:22989503-22990196+;Right=chr9:22989835-22990252+;Distance=332;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67654271 (chr9:22989487-22989819);Frequency=1.00
chr9	CG	SV	22989503	22990196	10	+	.	ID=2410;Type=deletion;Left=chr9:22989503-22990196;Right=chr9:22989835-22990252
chr9	CG	SV	22989835	22990252	10	+	.	ID=2410;Type=deletion;Left=chr9:22989503-22990196;Right=chr9:22989835-22990252
chr9	CG	SV	23352801	23368210	87	.	.	ID=2408;Type=deletion;Left=chr9:23352801-23353284+;Right=chr9:23367685-23368210+;Distance=14884;DiscordantMatePairAlignments=87;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr9	CG	SV	23352801	23353284	87	+	.	ID=2408;Type=deletion;Left=chr9:23352801-23353284;Right=chr9:23367685-23368210
chr9	CG	SV	23367685	23368210	87	+	.	ID=2408;Type=deletion;Left=chr9:23352801-23353284;Right=chr9:23367685-23368210
chr9	CG	SV	24135482	24140817	24	.	.	ID=2407;Type=deletion;Left=chr9:24135482-24135838+;Right=chr9:24140391-24140817+;Distance=4909;DiscordantMatePairAlignments=24;LeftRepeat=;RightRepeat=L1MC:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	24135482	24135838	24	+	.	ID=2407;Type=deletion;Left=chr9:24135482-24135838;Right=chr9:24140391-24140817
chr9	CG	SV	24140391	24140817	24	+	.	ID=2407;Type=deletion;Left=chr9:24135482-24135838;Right=chr9:24140391-24140817
chr9	CG	SV	31281356	31283041	31	.	.	ID=2403;Type=deletion;Left=chr9:31281356-31281792+;Right=chr9:31282673-31283041+;Distance=1317;DiscordantMatePairAlignments=31;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1PA16:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71965107 (chr9:31281356-31282673);Frequency=0.71
chr9	CG	SV	31281356	31281792	31	+	.	ID=2403;Type=deletion;Left=chr9:31281356-31281792;Right=chr9:31282673-31283041
chr9	CG	SV	31282673	31283041	31	+	.	ID=2403;Type=deletion;Left=chr9:31281356-31281792;Right=chr9:31282673-31283041
chr9	CG	SV	33413376	33415186	12	.	.	ID=2401;Type=deletion;Left=chr9:33413376-33413858+;Right=chr9:33414669-33415186+;Distance=1293;DiscordantMatePairAlignments=12;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=NR_003667:-;RightGenes=NR_003667:-;XRef=;Frequency=0.47
chr9	CG	SV	33413376	33413858	12	+	.	ID=2401;Type=deletion;Left=chr9:33413376-33413858;Right=chr9:33414669-33415186
chr9	CG	SV	33414669	33415186	12	+	.	ID=2401;Type=deletion;Left=chr9:33413376-33413858;Right=chr9:33414669-33415186
chr9	CG	SV	34670979	34671976	13	.	.	ID=1021;Type=tandem-duplication;Left=chr9:34670979-34671480-;Right=chr9:34671811-34671976-;Distance=496;DiscordantMatePairAlignments=13;LeftRepeat=MLT1A:LTR:MaLR;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	34670979	34671480	13	-	.	ID=1021;Type=tandem-duplication;Left=chr9:34670979-34671480;Right=chr9:34671811-34671976
chr9	CG	SV	34671811	34671976	13	-	.	ID=1021;Type=tandem-duplication;Left=chr9:34670979-34671480;Right=chr9:34671811-34671976
chr9	CG	SV	36352905	36354347	53	.	.	ID=2399;Type=deletion;Left=chr9:36352905-36353448+;Right=chr9:36354103-36354347+;Distance=1198;DiscordantMatePairAlignments=53;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=NM_022781:-;NM_194328:-;NM_194329:-;NM_194330:-;NM_194332:-;RightGenes=NM_022781:-;NM_194328:-;NM_194329:-;NM_194330:-;NM_194332:-;XRef=;Frequency=0.88
chr9	CG	SV	36352905	36353448	53	+	.	ID=2399;Type=deletion;Left=chr9:36352905-36353448;Right=chr9:36354103-36354347
chr9	CG	SV	36354103	36354347	53	+	.	ID=2399;Type=deletion;Left=chr9:36352905-36353448;Right=chr9:36354103-36354347
chr9	CG	SV	42405904	44010782	74	.	.	ID=286;Type=complex;Left=chr9:42405904-42405991-;Right=chr9:44010660-44010782+;Distance=1604669;DiscordantMatePairAlignments=74;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=SegDup;Self chain;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	42405904	42405991	74	-	.	ID=286;Type=complex;Left=chr9:42405904-42405991;Right=chr9:44010660-44010782
chr9	CG	SV	44010660	44010782	74	-	.	ID=286;Type=complex;Left=chr9:42405904-42405991;Right=chr9:44010660-44010782
chr9	CG	SV	42405932	42406068	20	.	.	ID=1020;Type=complex;Left=chr9:42405932-42406005-;Right=chr9:42405992-42406068-;Distance=63;DiscordantMatePairAlignments=20;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=SegDup;Self chain;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr9	CG	SV	42405932	42406005	20	-	.	ID=1020;Type=complex;Left=chr9:42405932-42406005;Right=chr9:42405992-42406068
chr9	CG	SV	42405992	42406068	20	-	.	ID=1020;Type=complex;Left=chr9:42405932-42406005;Right=chr9:42405992-42406068
chr9	CG	SV	44010534	44010783	176	.	.	ID=1019;Type=complex;Left=chr9:44010534-44010660-;Right=chr9:44010678-44010783-;Distance=123;DiscordantMatePairAlignments=176;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=SegDup;Self chain;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	44010534	44010660	176	-	.	ID=1019;Type=complex;Left=chr9:44010534-44010660;Right=chr9:44010678-44010783
chr9	CG	SV	44010678	44010783	176	-	.	ID=1019;Type=complex;Left=chr9:44010534-44010660;Right=chr9:44010678-44010783
chr9	CG	SV	67912569	67914078	60	.	.	ID=2396;Type=deletion;Left=chr9:67912569-67913288+;Right=chr9:67913643-67914078+;Distance=1074;DiscordantMatePairAlignments=60;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	67912569	67913288	60	+	.	ID=2396;Type=deletion;Left=chr9:67912569-67913288;Right=chr9:67913643-67914078
chr9	CG	SV	67913643	67914078	60	+	.	ID=2396;Type=deletion;Left=chr9:67912569-67913288;Right=chr9:67913643-67914078
chr9	CG	SV	70927942	70933713	15	.	.	ID=2394;Type=deletion;Left=chr9:70927942-70928539+;Right=chr9:70933176-70933713+;Distance=5234;DiscordantMatePairAlignments=15;LeftRepeat=;RightRepeat=L1MB8:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs67209752 (chr9:70927942-70933176);Frequency=0.88
chr9	CG	SV	70927942	70928539	15	+	.	ID=2394;Type=deletion;Left=chr9:70927942-70928539;Right=chr9:70933176-70933713
chr9	CG	SV	70933176	70933713	15	+	.	ID=2394;Type=deletion;Left=chr9:70927942-70928539;Right=chr9:70933176-70933713
chr9	CG	SV	70994347	70995300	38	.	.	ID=2393;Type=deletion;Left=chr9:70994347-70994899+;Right=chr9:70994821-70995300+;Distance=474;DiscordantMatePairAlignments=38;LeftRepeat=FAM:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_004817:+;NM_201629:+;RightGenes=NM_004817:+;NM_201629:+;XRef=rs71843308 (chr9:70994347-70994821);Frequency=0.65
chr9	CG	SV	70994347	70994899	38	+	.	ID=2393;Type=deletion;Left=chr9:70994347-70994899;Right=chr9:70994821-70995300
chr9	CG	SV	70994821	70995300	38	+	.	ID=2393;Type=deletion;Left=chr9:70994347-70994899;Right=chr9:70994821-70995300
chr9	CG	SV	71085299	71086573	14	.	.	ID=2392;Type=deletion;Left=chr9:71085299-71085905+;Right=chr9:71086459-71086573+;Distance=1160;DiscordantMatePairAlignments=14;LeftRepeat=HAL1:LINE:L1;RightRepeat=HAL1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71953158 (chr9:71085307-71086467);Frequency=0.94
chr9	CG	SV	71085299	71085905	14	+	.	ID=2392;Type=deletion;Left=chr9:71085299-71085905;Right=chr9:71086459-71086573
chr9	CG	SV	71086459	71086573	14	+	.	ID=2392;Type=deletion;Left=chr9:71085299-71085905;Right=chr9:71086459-71086573
chr9	CG	SV	75549991	75550404	19	-	.	ID=86;Type=interchromosomal;Left=chr9:75549991-75550404-;Right=chrX:72225872-72226317+;Distance=;DiscordantMatePairAlignments=19;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1M4:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	72225872	72226317	19	-	.	ID=86;Type=interchromosomal;Left=chr9:75549991-75550404-;Right=chrX:72225872-72226317+;Distance=;DiscordantMatePairAlignments=19;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1M4:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	78745580	78748425	78	.	.	ID=2390;Type=deletion;Left=chr9:78745580-78746139+;Right=chr9:78747922-78748425+;Distance=2342;DiscordantMatePairAlignments=78;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67936913 (chr9:78745579-78747921);Frequency=0.12
chr9	CG	SV	78745580	78746139	78	+	.	ID=2390;Type=deletion;Left=chr9:78745580-78746139;Right=chr9:78747922-78748425
chr9	CG	SV	78747922	78748425	78	+	.	ID=2390;Type=deletion;Left=chr9:78745580-78746139;Right=chr9:78747922-78748425
chr9	CG	SV	83514183	83517292	104	.	.	ID=2388;Type=deletion;Left=chr9:83514183-83514753+;Right=chr9:83516761-83517292+;Distance=2578;DiscordantMatePairAlignments=104;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67720670 (chr9:83514168-83516746);Frequency=1.00
chr9	CG	SV	83514183	83514753	104	+	.	ID=2388;Type=deletion;Left=chr9:83514183-83514753;Right=chr9:83516761-83517292
chr9	CG	SV	83516761	83517292	104	+	.	ID=2388;Type=deletion;Left=chr9:83514183-83514753;Right=chr9:83516761-83517292
chr9	CG	SV	86965117	86966186	10	.	.	ID=2386;Type=deletion;Left=chr9:86965117-86965641+;Right=chr9:86966088-86966186+;Distance=971;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72108290 (chr9:86964897-86965868);Frequency=0.35
chr9	CG	SV	86965117	86965641	10	+	.	ID=2386;Type=deletion;Left=chr9:86965117-86965641;Right=chr9:86966088-86966186
chr9	CG	SV	86966088	86966186	10	+	.	ID=2386;Type=deletion;Left=chr9:86965117-86965641;Right=chr9:86966088-86966186
chr9	CG	SV	90048816	90051387	88	.	.	ID=2383;Type=deletion;Left=chr9:90048816-90049227+;Right=chr9:90050796-90051387+;Distance=1980;DiscordantMatePairAlignments=88;LeftRepeat=;RightRepeat=MER21C:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs71317224 (chr9:90048816-90050796);Frequency=1.00
chr9	CG	SV	90048816	90049227	88	+	.	ID=2383;Type=deletion;Left=chr9:90048816-90049227;Right=chr9:90050796-90051387
chr9	CG	SV	90050796	90051387	88	+	.	ID=2383;Type=deletion;Left=chr9:90048816-90049227;Right=chr9:90050796-90051387
chr9	CG	SV	100348867	100351943	126	.	.	ID=2377;Type=deletion;Left=chr9:100348867-100349355+;Right=chr9:100351488-100351943+;Distance=2621;DiscordantMatePairAlignments=126;LeftRepeat=;RightRepeat=;LeftGenes=NM_005458:-;RightGenes=NM_005458:-;XRef=rs71885665 (chr9:100348864-100351485);Frequency=0.82
chr9	CG	SV	100348867	100349355	126	+	.	ID=2377;Type=deletion;Left=chr9:100348867-100349355;Right=chr9:100351488-100351943
chr9	CG	SV	100351488	100351943	126	+	.	ID=2377;Type=deletion;Left=chr9:100348867-100349355;Right=chr9:100351488-100351943
chr9	CG	SV	103221617	103222241	35	.	.	ID=1015;Type=tandem-duplication;Left=chr9:103221617-103221936-;Right=chr9:103221938-103222241-;Distance=305;DiscordantMatePairAlignments=35;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.30
chr9	CG	SV	103221617	103221936	35	-	.	ID=1015;Type=tandem-duplication;Left=chr9:103221617-103221936;Right=chr9:103221938-103222241
chr9	CG	SV	103221938	103222241	35	-	.	ID=1015;Type=tandem-duplication;Left=chr9:103221617-103221936;Right=chr9:103221938-103222241
chr9	CG	SV	103259526	103260884	146	.	.	ID=2375;Type=deletion;Left=chr9:103259526-103260028+;Right=chr9:103260209-103260884+;Distance=683;DiscordantMatePairAlignments=146;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr9	CG	SV	103259526	103260028	146	+	.	ID=2375;Type=deletion;Left=chr9:103259526-103260028;Right=chr9:103260209-103260884
chr9	CG	SV	103260209	103260884	146	+	.	ID=2375;Type=deletion;Left=chr9:103259526-103260028;Right=chr9:103260209-103260884
chr9	CG	SV	103483791	103484820	115	.	.	ID=2374;Type=deletion;Left=chr9:103483791-103484399+;Right=chr9:103484557-103484820+;Distance=766;DiscordantMatePairAlignments=115;LeftRepeat=;RightRepeat=;LeftGenes=NM_133445:-;RightGenes=NM_133445:-;XRef=rs66469119 (chr9:103483782-103484548);Frequency=1.00
chr9	CG	SV	103483791	103484399	115	+	.	ID=2374;Type=deletion;Left=chr9:103483791-103484399;Right=chr9:103484557-103484820
chr9	CG	SV	103484557	103484820	115	+	.	ID=2374;Type=deletion;Left=chr9:103483791-103484399;Right=chr9:103484557-103484820
chr9	CG	SV	106856114	106857527	15	.	.	ID=278;Type=distal-duplication;Left=chr9:106856114-106856457-;Right=chr9:106857169-106857527+;Distance=712;DiscordantMatePairAlignments=15;LeftRepeat=HUERS-P1:LTR:ERV1;Self chain;RightRepeat=LTR57-int:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr9	CG	SV	106856114	106856457	15	-	.	ID=278;Type=distal-duplication;Left=chr9:106856114-106856457;Right=chr9:106857169-106857527
chr9	CG	SV	106857169	106857527	15	-	.	ID=278;Type=distal-duplication;Left=chr9:106856114-106856457;Right=chr9:106857169-106857527
chr9	CG	SV	106856800	106857162	52	.	.	ID=3624;Type=distal-duplication;Left=chr9:106856800-106857130+;Right=chr9:106856768-106857162-;Distance=362;DiscordantMatePairAlignments=52;LeftRepeat=Self chain;RightRepeat=LTR57-int:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr9	CG	SV	106856800	106857130	52	+	.	ID=3624;Type=distal-duplication;Left=chr9:106856800-106857130;Right=chr9:106856768-106857162
chr9	CG	SV	106856768	106857162	52	+	.	ID=3624;Type=distal-duplication;Left=chr9:106856800-106857130;Right=chr9:106856768-106857162
chr9	CG	SV	109577353	109580777	42	.	.	ID=2371;Type=deletion;Left=chr9:109577353-109577699+;Right=chr9:109580428-109580777+;Distance=3075;DiscordantMatePairAlignments=42;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67559039 (chr9:109577341-109580416);Frequency=0.94
chr9	CG	SV	109577353	109577699	42	+	.	ID=2371;Type=deletion;Left=chr9:109577353-109577699;Right=chr9:109580428-109580777
chr9	CG	SV	109580428	109580777	42	+	.	ID=2371;Type=deletion;Left=chr9:109577353-109577699;Right=chr9:109580428-109580777
chr9	CG	SV	114976918	114977740	17	.	.	ID=2368;Type=deletion;Left=chr9:114976918-114977594+;Right=chr9:114977213-114977740+;Distance=295;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=;LeftGenes=NM_015258:-;RightGenes=NM_015258:-;XRef=rs72190807 (chr9:114976905-114977200);Frequency=1.00
chr9	CG	SV	114976918	114977594	17	+	.	ID=2368;Type=deletion;Left=chr9:114976918-114977594;Right=chr9:114977213-114977740
chr9	CG	SV	114977213	114977740	17	+	.	ID=2368;Type=deletion;Left=chr9:114976918-114977594;Right=chr9:114977213-114977740
chr9	CG	SV	118038697	118256269	123	.	.	ID=2367;Type=deletion;Left=chr9:118038697-118039336+;Right=chr9:118255720-118256269+;Distance=217023;DiscordantMatePairAlignments=123;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_002581:+;RightGenes=NM_014010:-;NM_198186:-;NM_198187:-;NM_198188:-;XRef=;Frequency=0.00
chr9	CG	SV	118038697	118039336	123	+	.	ID=2367;Type=deletion;Left=chr9:118038697-118039336;Right=chr9:118255720-118256269
chr9	CG	SV	118255720	118256269	123	+	.	ID=2367;Type=deletion;Left=chr9:118038697-118039336;Right=chr9:118255720-118256269
chr9	CG	SV	118266861	118270833	127	.	.	ID=2366;Type=deletion;Left=chr9:118266861-118267327+;Right=chr9:118270262-118270833+;Distance=3401;DiscordantMatePairAlignments=127;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_014010:-;NM_198186:-;NM_198187:-;NM_198188:-;RightGenes=NM_014010:-;NM_198186:-;NM_198187:-;NM_198188:-;XRef=;Frequency=0.00
chr9	CG	SV	118266861	118267327	127	+	.	ID=2366;Type=deletion;Left=chr9:118266861-118267327;Right=chr9:118270262-118270833
chr9	CG	SV	118270262	118270833	127	+	.	ID=2366;Type=deletion;Left=chr9:118266861-118267327;Right=chr9:118270262-118270833
chr9	CG	SV	118516898	118517780	24	.	.	ID=2364;Type=deletion;Left=chr9:118516898-118517259+;Right=chr9:118517232-118517780+;Distance=334;DiscordantMatePairAlignments=24;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_014010:-;NM_198186:-;NM_198187:-;RightGenes=NM_014010:-;NM_198186:-;NM_198187:-;XRef=rs72440176 (chr9:118516898-118517232);Frequency=0.94
chr9	CG	SV	118516898	118517259	24	+	.	ID=2364;Type=deletion;Left=chr9:118516898-118517259;Right=chr9:118517232-118517780
chr9	CG	SV	118517232	118517780	24	+	.	ID=2364;Type=deletion;Left=chr9:118516898-118517259;Right=chr9:118517232-118517780
chr9	CG	SV	118746773	119112713	64	.	.	ID=2363;Type=deletion;Left=chr9:118746773-118747424+;Right=chr9:119112244-119112713+;Distance=365471;DiscordantMatePairAlignments=64;LeftRepeat=AluSx:SINE:Alu;RightRepeat=(CATA)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=NM_014010:-;NM_198186:-;NM_198187:-;RightGenes=NM_014010:-;NM_198186:-;NM_198187:-;XRef=;Frequency=0.00
chr9	CG	SV	118746773	118747424	64	+	.	ID=2363;Type=deletion;Left=chr9:118746773-118747424;Right=chr9:119112244-119112713
chr9	CG	SV	119112244	119112713	64	+	.	ID=2363;Type=deletion;Left=chr9:118746773-118747424;Right=chr9:119112244-119112713
chr9	CG	SV	121571666	121572596	24	.	.	ID=2362;Type=deletion;Left=chr9:121571666-121572163+;Right=chr9:121571984-121572596+;Distance=318;DiscordantMatePairAlignments=24;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71317246 (chr9:121571666-121571984);Frequency=1.00
chr9	CG	SV	121571666	121572163	24	+	.	ID=2362;Type=deletion;Left=chr9:121571666-121572163;Right=chr9:121571984-121572596
chr9	CG	SV	121571984	121572596	24	+	.	ID=2362;Type=deletion;Left=chr9:121571666-121572163;Right=chr9:121571984-121572596
chr9	CG	SV	121829943	121849385	23	.	.	ID=3623;Type=probable-inversion;Left=chr9:121829943-121830257+;Right=chr9:121848942-121849385-;Distance=19442;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=Tigger3b:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	121829943	121830257	23	+	.	ID=3623;Type=probable-inversion;Left=chr9:121829943-121830257;Right=chr9:121848942-121849385
chr9	CG	SV	121848942	121849385	23	+	.	ID=3623;Type=probable-inversion;Left=chr9:121829943-121830257;Right=chr9:121848942-121849385
chr9	CG	SV	122527174	123058804	61	.	.	ID=1014;Type=tandem-duplication;Left=chr9:122527174-122527431-;Right=chr9:123058215-123058804-;Distance=531373;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	122527174	122527431	61	-	.	ID=1014;Type=tandem-duplication;Left=chr9:122527174-122527431;Right=chr9:123058215-123058804
chr9	CG	SV	123058215	123058804	61	-	.	ID=1014;Type=tandem-duplication;Left=chr9:122527174-122527431;Right=chr9:123058215-123058804
chr9	CG	SV	122733488	122775193	94	.	.	ID=3622;Type=distal-duplication;Left=chr9:122733488-122733903+;Right=chr9:122774686-122775193-;Distance=41705;DiscordantMatePairAlignments=94;LeftRepeat=Self chain;RightRepeat=(TTTAA)n:Simple_repeat:Simple_repeat;LeftGenes=;RightGenes=NM_001735:-;XRef=;Frequency=0.00
chr9	CG	SV	122733488	122733903	94	+	.	ID=3622;Type=distal-duplication;Left=chr9:122733488-122733903;Right=chr9:122774686-122775193
chr9	CG	SV	122774686	122775193	94	+	.	ID=3622;Type=distal-duplication;Left=chr9:122733488-122733903;Right=chr9:122774686-122775193
chr9	CG	SV	122733846	122743678	161	.	.	ID=275;Type=distal-duplication;Left=chr9:122733846-122734331-;Right=chr9:122743021-122743678+;Distance=8690;DiscordantMatePairAlignments=161;LeftRepeat=;RightRepeat=MLT1C:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	122733846	122734331	161	-	.	ID=275;Type=distal-duplication;Left=chr9:122733846-122734331;Right=chr9:122743021-122743678
chr9	CG	SV	122743021	122743678	161	-	.	ID=275;Type=distal-duplication;Left=chr9:122733846-122734331;Right=chr9:122743021-122743678
chr9	CG	SV	123266245	123267639	69	.	.	ID=1013;Type=tandem-duplication;Left=chr9:123266245-123266724-;Right=chr9:123267118-123267639-;Distance=915;DiscordantMatePairAlignments=69;LeftRepeat=(CAAAAA)n:Simple_repeat:Simple_repeat;Tandem AAAACA;Tandem CAAAA;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=NR_003191:-;RightGenes=NR_003191:-;XRef=;Frequency=0.24
chr9	CG	SV	123266245	123266724	69	-	.	ID=1013;Type=tandem-duplication;Left=chr9:123266245-123266724;Right=chr9:123267118-123267639
chr9	CG	SV	123267118	123267639	69	-	.	ID=1013;Type=tandem-duplication;Left=chr9:123266245-123266724;Right=chr9:123267118-123267639
chr9	CG	SV	126338340	126338955	127	+	.	ID=1904;Type=interchromosomal;Left=chr9:126338340-126338955+;Right=chrX:71238542-71239062+;Distance=;DiscordantMatePairAlignments=127;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_001489:-;NM_033334:-;RightGenes=NM_001013627:+;XRef=;Frequency=0.00
chrX	CG	SV	71238542	71239062	127	+	.	ID=1904;Type=interchromosomal;Left=chr9:126338340-126338955+;Right=chrX:71238542-71239062+;Distance=;DiscordantMatePairAlignments=127;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_001489:-;NM_033334:-;RightGenes=NM_001013627:+;XRef=;Frequency=0.00
chr9	CG	SV	129739334	129742403	42	.	.	ID=3621;Type=probable-inversion;Left=chr9:129739334-129739855+;Right=chr9:129741883-129742403-;Distance=3069;DiscordantMatePairAlignments=42;LeftRepeat=MIR:SINE:MIR;RightRepeat=MIRm:SINE:MIR;LeftGenes=NM_003863:-;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	129739334	129739855	42	+	.	ID=3621;Type=probable-inversion;Left=chr9:129739334-129739855;Right=chr9:129741883-129742403
chr9	CG	SV	129741883	129742403	42	+	.	ID=3621;Type=probable-inversion;Left=chr9:129739334-129739855;Right=chr9:129741883-129742403
chr9	CG	SV	130402343	130405899	110	.	.	ID=2360;Type=deletion;Left=chr9:130402343-130402829+;Right=chr9:130405306-130405899+;Distance=2963;DiscordantMatePairAlignments=110;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001130438:+;NM_003127:+;RightGenes=NM_001130438:+;NM_003127:+;XRef=;Frequency=0.00
chr9	CG	SV	130402343	130402829	110	+	.	ID=2360;Type=deletion;Left=chr9:130402343-130402829;Right=chr9:130405306-130405899
chr9	CG	SV	130405306	130405899	110	+	.	ID=2360;Type=deletion;Left=chr9:130402343-130402829;Right=chr9:130405306-130405899
chr9	CG	SV	130881752	130882245	60	+	.	ID=2111;Type=interchromosomal;Left=chr9:130881752-130882245+;Right=chr13:84855587-84856007+;Distance=;DiscordantMatePairAlignments=60;LeftRepeat=AluSc:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	84855587	84856007	60	+	.	ID=2111;Type=interchromosomal;Left=chr9:130881752-130882245+;Right=chr13:84855587-84856007+;Distance=;DiscordantMatePairAlignments=60;LeftRepeat=AluSc:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	132070467	132075232	53	.	.	ID=2358;Type=deletion;Left=chr9:132070467-132070979+;Right=chr9:132074626-132075232+;Distance=4159;DiscordantMatePairAlignments=53;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr9	CG	SV	132070467	132070979	53	+	.	ID=2358;Type=deletion;Left=chr9:132070467-132070979;Right=chr9:132074626-132075232
chr9	CG	SV	132074626	132075232	53	+	.	ID=2358;Type=deletion;Left=chr9:132070467-132070979;Right=chr9:132074626-132075232
chr9	CG	SV	132372948	132377720	12	.	.	ID=2357;Type=deletion;Left=chr9:132372948-132373282+;Right=chr9:132377243-132377720+;Distance=4295;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L1PB2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr9	CG	SV	132372948	132373282	12	+	.	ID=2357;Type=deletion;Left=chr9:132372948-132373282;Right=chr9:132377243-132377720
chr9	CG	SV	132377243	132377720	12	+	.	ID=2357;Type=deletion;Left=chr9:132372948-132373282;Right=chr9:132377243-132377720
chr9	CG	SV	134378623	134379060	47	-	.	ID=919;Type=interchromosomal;Left=chr9:134378623-134379060-;Right=chr13:31015480-31015963-;Distance=;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_207417:+;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	31015480	31015963	47	-	.	ID=919;Type=interchromosomal;Left=chr9:134378623-134379060-;Right=chr13:31015480-31015963-;Distance=;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_207417:+;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	134748909	134750055	77	.	.	ID=2354;Type=distal-duplication;Left=chr9:134748909-134749469+;Right=chr9:134749953-134750055+;Distance=1044;DiscordantMatePairAlignments=77;LeftRepeat=;RightRepeat=;LeftGenes=NM_018956:+;RightGenes=NM_018956:+;XRef=;Frequency=0.35
chr9	CG	SV	134748909	134749469	77	+	.	ID=2354;Type=distal-duplication;Left=chr9:134748909-134749469;Right=chr9:134749953-134750055
chr9	CG	SV	134749953	134750055	77	+	.	ID=2354;Type=distal-duplication;Left=chr9:134748909-134749469;Right=chr9:134749953-134750055
chr9	CG	SV	134748358	134750089	49	.	.	ID=1009;Type=distal-duplication;Left=chr9:134748358-134748911-;Right=chr9:134749949-134750089-;Distance=1178;DiscordantMatePairAlignments=49;LeftRepeat=;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_018956:+;RightGenes=NM_018956:+;XRef=;Frequency=0.35
chr9	CG	SV	134748358	134748911	49	-	.	ID=1009;Type=distal-duplication;Left=chr9:134748358-134748911;Right=chr9:134749949-134750089
chr9	CG	SV	134749949	134750089	49	-	.	ID=1009;Type=distal-duplication;Left=chr9:134748358-134748911;Right=chr9:134749949-134750089
chr9	CG	SV	135369043	135370048	11	.	.	ID=2351;Type=deletion;Left=chr9:135369043-135369466+;Right=chr9:135369385-135370048+;Distance=342;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs36107150 (chr9:135369043-135369385);Frequency=1.00
chr9	CG	SV	135369043	135369466	11	+	.	ID=2351;Type=deletion;Left=chr9:135369043-135369466;Right=chr9:135369385-135370048
chr9	CG	SV	135369385	135370048	11	+	.	ID=2351;Type=deletion;Left=chr9:135369043-135369466;Right=chr9:135369385-135370048
chr9	CG	SV	135403936	135404680	20	.	.	ID=2350;Type=deletion;Left=chr9:135403936-135404617+;Right=chr9:135404260-135404680+;Distance=324;DiscordantMatePairAlignments=20;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=ERVL-E:LTR:ERVL;LeftGenes=NM_001145320:+;NM_014694:+;RightGenes=NM_001145320:+;NM_014694:+;XRef=;Frequency=1.00
chr9	CG	SV	135403936	135404617	20	+	.	ID=2350;Type=deletion;Left=chr9:135403936-135404617;Right=chr9:135404260-135404680
chr9	CG	SV	135404260	135404680	20	+	.	ID=2350;Type=deletion;Left=chr9:135403936-135404617;Right=chr9:135404260-135404680
chr9	CG	SV	135443450	135443656	15	.	.	ID=1008;Type=tandem-duplication;Left=chr9:135443450-135443526-;Right=chr9:135443522-135443656-;Distance=130;DiscordantMatePairAlignments=15;LeftRepeat=Tandem period 17;RightRepeat=Tandem period 17;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	135443450	135443526	15	-	.	ID=1008;Type=tandem-duplication;Left=chr9:135443450-135443526;Right=chr9:135443522-135443656
chr9	CG	SV	135443522	135443656	15	-	.	ID=1008;Type=tandem-duplication;Left=chr9:135443450-135443526;Right=chr9:135443522-135443656
chr9	CG	SV	135615015	135616622	91	.	.	ID=2349;Type=deletion;Left=chr9:135615015-135615366+;Right=chr9:135616088-135616622+;Distance=1073;DiscordantMatePairAlignments=91;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr9	CG	SV	135615015	135615366	91	+	.	ID=2349;Type=deletion;Left=chr9:135615015-135615366;Right=chr9:135616088-135616622
chr9	CG	SV	135616088	135616622	91	+	.	ID=2349;Type=deletion;Left=chr9:135615015-135615366;Right=chr9:135616088-135616622
chr9	CG	SV	137353887	137357981	456	.	.	ID=2347;Type=deletion;Left=chr9:137353887-137354504+;Right=chr9:137357427-137357981+;Distance=3540;DiscordantMatePairAlignments=456;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66913532 (chr9:137353884-137357424);Frequency=0.82
chr9	CG	SV	137353887	137354504	456	+	.	ID=2347;Type=deletion;Left=chr9:137353887-137354504;Right=chr9:137357427-137357981
chr9	CG	SV	137357427	137357981	456	+	.	ID=2347;Type=deletion;Left=chr9:137353887-137354504;Right=chr9:137357427-137357981
chr9	CG	SV	138547345	138548227	15	.	.	ID=2346;Type=deletion;Left=chr9:138547345-138548018+;Right=chr9:138547616-138548227+;Distance=271;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_017617:-;RightGenes=NM_017617:-;XRef=rs10525313 (chr9:138547345-138547608);Frequency=0.47
chr9	CG	SV	138547345	138548018	15	+	.	ID=2346;Type=deletion;Left=chr9:138547345-138548018;Right=chr9:138547616-138548227
chr9	CG	SV	138547616	138548227	15	+	.	ID=2346;Type=deletion;Left=chr9:138547345-138548018;Right=chr9:138547616-138548227
chr9	CG	SV	139373330	139376408	10	.	.	ID=2345;Type=deletion;Left=chr9:139373330-139373610+;Right=chr9:139375795-139376408+;Distance=2465;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_017820:-;RightGenes=NM_017820:-;XRef=;Frequency=0.71
chr9	CG	SV	139373330	139373610	10	+	.	ID=2345;Type=deletion;Left=chr9:139373330-139373610;Right=chr9:139375795-139376408
chr9	CG	SV	139375795	139376408	10	+	.	ID=2345;Type=deletion;Left=chr9:139373330-139373610;Right=chr9:139375795-139376408
chr9	CG	SV	139683434	139683852	22	.	.	ID=1006;Type=tandem-duplication;Left=chr9:139683434-139683588-;Right=chr9:139683648-139683852-;Distance=264;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;Tandem period 37;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_001145527:+;NM_024757:+;RightGenes=NM_001145527:+;NM_024757:+;XRef=;Frequency=0.88
chr9	CG	SV	139683434	139683588	22	-	.	ID=1006;Type=tandem-duplication;Left=chr9:139683434-139683588;Right=chr9:139683648-139683852
chr9	CG	SV	139683648	139683852	22	-	.	ID=1006;Type=tandem-duplication;Left=chr9:139683434-139683588;Right=chr9:139683648-139683852
chr9	CG	SV	139892490	139897374	79	.	.	ID=2344;Type=complex;Left=chr9:139892490-139892714+;Right=chr9:139897015-139897374+;Distance=4525;DiscordantMatePairAlignments=79;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000718:+;RightGenes=NM_000718:+;XRef=;Frequency=1.00
chr9	CG	SV	139892490	139892714	79	+	.	ID=2344;Type=complex;Left=chr9:139892490-139892714;Right=chr9:139897015-139897374
chr9	CG	SV	139897015	139897374	79	+	.	ID=2344;Type=complex;Left=chr9:139892490-139892714;Right=chr9:139897015-139897374
chr9	CG	SV	139893433	139897503	16	.	.	ID=2343;Type=complex;Left=chr9:139893433-139893542+;Right=chr9:139897017-139897503+;Distance=3584;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000718:+;RightGenes=NM_000718:+;XRef=rs72411053 (chr9:139893431-139897015);Frequency=1.00
chr9	CG	SV	139893433	139893542	16	+	.	ID=2343;Type=complex;Left=chr9:139893433-139893542;Right=chr9:139897017-139897503
chr9	CG	SV	139897017	139897503	16	+	.	ID=2343;Type=complex;Left=chr9:139893433-139893542;Right=chr9:139897017-139897503
chr9	CG	SV	140032195	140034049	23	.	.	ID=2342;Type=deletion;Left=chr9:140032195-140032516+;Right=chr9:140033860-140034049+;Distance=1665;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;Tandem period 37;RightRepeat=Self chain;Tandem period 37;LeftGenes=NM_000718:+;RightGenes=NM_000718:+;XRef=;Frequency=0.06
chr9	CG	SV	140032195	140032516	23	+	.	ID=2342;Type=deletion;Left=chr9:140032195-140032516;Right=chr9:140033860-140034049
chr9	CG	SV	140033860	140034049	23	+	.	ID=2342;Type=deletion;Left=chr9:140032195-140032516;Right=chr9:140033860-140034049
chr10	CG	SV	1082622	1083821	12	.	.	ID=2339;Type=deletion;Left=chr10:1082622-1083053+;Right=chr10:1083609-1083821+;Distance=987;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem period 30;RightRepeat=Self chain;Tigger3(Golem):DNA:MER2_type;LeftGenes=NM_004508:-;RightGenes=NM_004508:-;XRef=;Frequency=0.65
chr10	CG	SV	1082622	1083053	12	+	.	ID=2339;Type=deletion;Left=chr10:1082622-1083053;Right=chr10:1083609-1083821
chr10	CG	SV	1083609	1083821	12	+	.	ID=2339;Type=deletion;Left=chr10:1082622-1083053;Right=chr10:1083609-1083821
chr10	CG	SV	4280063	4282260	56	.	.	ID=2336;Type=deletion;Left=chr10:4280063-4280709+;Right=chr10:4281683-4282260+;Distance=1620;DiscordantMatePairAlignments=56;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66666838 (chr10:4280063-4281683);Frequency=1.00
chr10	CG	SV	4280063	4280709	56	+	.	ID=2336;Type=deletion;Left=chr10:4280063-4280709;Right=chr10:4281683-4282260
chr10	CG	SV	4281683	4282260	56	+	.	ID=2336;Type=deletion;Left=chr10:4280063-4280709;Right=chr10:4281683-4282260
chr10	CG	SV	4698518	4701069	73	.	.	ID=2335;Type=deletion;Left=chr10:4698518-4698990+;Right=chr10:4700522-4701069+;Distance=2004;DiscordantMatePairAlignments=73;LeftRepeat=L1MB7:LINE:L1;RightRepeat=L1MB7:LINE:L1;LeftGenes=NR_024475:-;RightGenes=NR_024475:-;XRef=;Frequency=0.88
chr10	CG	SV	4698518	4698990	73	+	.	ID=2335;Type=deletion;Left=chr10:4698518-4698990;Right=chr10:4700522-4701069
chr10	CG	SV	4700522	4701069	73	+	.	ID=2335;Type=deletion;Left=chr10:4698518-4698990;Right=chr10:4700522-4701069
chr10	CG	SV	5627101	5677750	180	.	.	ID=2333;Type=deletion;Left=chr10:5627101-5627958+;Right=chr10:5677121-5677750+;Distance=50020;DiscordantMatePairAlignments=180;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	5627101	5627958	180	+	.	ID=2333;Type=deletion;Left=chr10:5627101-5627958;Right=chr10:5677121-5677750
chr10	CG	SV	5677121	5677750	180	+	.	ID=2333;Type=deletion;Left=chr10:5627101-5627958;Right=chr10:5677121-5677750
chr10	CG	SV	6137392	6138392	66	.	.	ID=2332;Type=deletion;Left=chr10:6137392-6137976+;Right=chr10:6137890-6138392+;Distance=498;DiscordantMatePairAlignments=66;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=NM_000417:-;RightGenes=NM_000417:-;XRef=rs71389922 (chr10:6137392-6137890);Frequency=1.00
chr10	CG	SV	6137392	6137976	66	+	.	ID=2332;Type=deletion;Left=chr10:6137392-6137976;Right=chr10:6137890-6138392
chr10	CG	SV	6137890	6138392	66	+	.	ID=2332;Type=deletion;Left=chr10:6137392-6137976;Right=chr10:6137890-6138392
chr10	CG	SV	6292018	6293581	12	.	.	ID=2331;Type=deletion;Left=chr10:6292018-6292369+;Right=chr10:6292974-6293581+;Distance=956;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_001145443:+;NM_004566:+;RightGenes=NM_001145443:+;NM_004566:+;XRef=;Frequency=0.94
chr10	CG	SV	6292018	6292369	12	+	.	ID=2331;Type=deletion;Left=chr10:6292018-6292369;Right=chr10:6292974-6293581
chr10	CG	SV	6292974	6293581	12	+	.	ID=2331;Type=deletion;Left=chr10:6292018-6292369;Right=chr10:6292974-6293581
chr10	CG	SV	6451575	6458259	177	.	.	ID=2330;Type=deletion;Left=chr10:6451575-6452134+;Right=chr10:6457641-6458259+;Distance=6066;DiscordantMatePairAlignments=177;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71389924 (chr10:6451586-6457652);Frequency=0.94
chr10	CG	SV	6451575	6452134	177	+	.	ID=2330;Type=deletion;Left=chr10:6451575-6452134;Right=chr10:6457641-6458259
chr10	CG	SV	6457641	6458259	177	+	.	ID=2330;Type=deletion;Left=chr10:6451575-6452134;Right=chr10:6457641-6458259
chr10	CG	SV	6687906	6689138	53	.	.	ID=2329;Type=deletion;Left=chr10:6687906-6688620+;Right=chr10:6688865-6689138+;Distance=959;DiscordantMatePairAlignments=53;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	6687906	6688620	53	+	.	ID=2329;Type=deletion;Left=chr10:6687906-6688620;Right=chr10:6688865-6689138
chr10	CG	SV	6688865	6689138	53	+	.	ID=2329;Type=deletion;Left=chr10:6687906-6688620;Right=chr10:6688865-6689138
chr10	CG	SV	7117046	7118811	171	.	.	ID=2328;Type=deletion;Left=chr10:7117046-7117567+;Right=chr10:7118307-7118811+;Distance=1261;DiscordantMatePairAlignments=171;LeftRepeat=;RightRepeat=L1ME3A:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr10	CG	SV	7117046	7117567	171	+	.	ID=2328;Type=deletion;Left=chr10:7117046-7117567;Right=chr10:7118307-7118811
chr10	CG	SV	7118307	7118811	171	+	.	ID=2328;Type=deletion;Left=chr10:7117046-7117567;Right=chr10:7118307-7118811
chr10	CG	SV	18543082	18544124	67	.	.	ID=2326;Type=deletion;Left=chr10:18543082-18543578+;Right=chr10:18543596-18544124+;Distance=514;DiscordantMatePairAlignments=67;LeftRepeat=;RightRepeat=;LeftGenes=NM_001167945:+;NM_201571:+;NM_201572:+;NM_201593:+;NM_201596:+;NM_201597:+;RightGenes=NM_001167945:+;NM_201571:+;NM_201572:+;NM_201593:+;NM_201596:+;NM_201597:+;XRef=rs71727498 (chr10:18543082-18543596);Frequency=0.88
chr10	CG	SV	18543082	18543578	67	+	.	ID=2326;Type=deletion;Left=chr10:18543082-18543578;Right=chr10:18543596-18544124
chr10	CG	SV	18543596	18544124	67	+	.	ID=2326;Type=deletion;Left=chr10:18543082-18543578;Right=chr10:18543596-18544124
chr10	CG	SV	27039096	27042495	34	.	.	ID=2320;Type=deletion;Left=chr10:27039096-27039632+;Right=chr10:27042232-27042495+;Distance=3136;DiscordantMatePairAlignments=34;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_014317:+;RightGenes=NM_014317:+;XRef=rs67040591 (chr10:27038982-27042120);Frequency=0.88
chr10	CG	SV	27039096	27039632	34	+	.	ID=2320;Type=deletion;Left=chr10:27039096-27039632;Right=chr10:27042232-27042495
chr10	CG	SV	27042232	27042495	34	+	.	ID=2320;Type=deletion;Left=chr10:27039096-27039632;Right=chr10:27042232-27042495
chr10	CG	SV	27264206	27268480	11	.	.	ID=2319;Type=distal-duplication;Left=chr10:27264206-27264623+;Right=chr10:27268091-27268480+;Distance=3885;DiscordantMatePairAlignments=11;LeftRepeat=AluSc:SINE:Alu;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NR_026795:-;RightGenes=NR_026795:-;XRef=rs72174406 (chr10:27264209-27268094);Frequency=0.76
chr10	CG	SV	27264206	27264623	11	+	.	ID=2319;Type=distal-duplication;Left=chr10:27264206-27264623;Right=chr10:27268091-27268480
chr10	CG	SV	27268091	27268480	11	+	.	ID=2319;Type=distal-duplication;Left=chr10:27264206-27264623;Right=chr10:27268091-27268480
chr10	CG	SV	27264287	27269313	22	.	.	ID=1003;Type=distal-duplication;Left=chr10:27264287-27264633-;Right=chr10:27268902-27269313-;Distance=4680;DiscordantMatePairAlignments=22;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NR_026795:-;RightGenes=NR_026795:-;XRef=;Frequency=0.76
chr10	CG	SV	27264287	27264633	22	-	.	ID=1003;Type=distal-duplication;Left=chr10:27264287-27264633;Right=chr10:27268902-27269313
chr10	CG	SV	27268902	27269313	22	-	.	ID=1003;Type=distal-duplication;Left=chr10:27264287-27264633;Right=chr10:27268902-27269313
chr10	CG	SV	27482760	61185883	40	.	.	ID=269;Type=probable-inversion;Left=chr10:27482760-27483457-;Right=chr10:61185535-61185883+;Distance=33702078;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;RightRepeat=MLT1C:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	27482760	27483457	40	-	.	ID=269;Type=probable-inversion;Left=chr10:27482760-27483457;Right=chr10:61185535-61185883
chr10	CG	SV	61185535	61185883	40	-	.	ID=269;Type=probable-inversion;Left=chr10:27482760-27483457;Right=chr10:61185535-61185883
chr10	CG	SV	29016808	29018646	24	.	.	ID=271;Type=probable-inversion;Left=chr10:29016808-29017163-;Right=chr10:29018334-29018646+;Distance=1171;DiscordantMatePairAlignments=24;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	29016808	29017163	24	-	.	ID=271;Type=probable-inversion;Left=chr10:29016808-29017163;Right=chr10:29018334-29018646
chr10	CG	SV	29018334	29018646	24	-	.	ID=271;Type=probable-inversion;Left=chr10:29016808-29017163;Right=chr10:29018334-29018646
chr10	CG	SV	32297884	32301182	156	.	.	ID=2318;Type=deletion;Left=chr10:32297884-32298443+;Right=chr10:32300616-32301182+;Distance=2732;DiscordantMatePairAlignments=156;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72294841 (chr10:32297901-32300633);Frequency=0.88
chr10	CG	SV	32297884	32298443	156	+	.	ID=2318;Type=deletion;Left=chr10:32297884-32298443;Right=chr10:32300616-32301182
chr10	CG	SV	32300616	32301182	156	+	.	ID=2318;Type=deletion;Left=chr10:32297884-32298443;Right=chr10:32300616-32301182
chr10	CG	SV	46508382	46508954	19	.	.	ID=2305;Type=complex;Left=chr10:46508382-46509065+;Right=chr10:46508710-46508954+;Distance=328;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	46508382	46509065	19	+	.	ID=2305;Type=complex;Left=chr10:46508382-46509065;Right=chr10:46508710-46508954
chr10	CG	SV	46508710	46508954	19	+	.	ID=2305;Type=complex;Left=chr10:46508382-46509065;Right=chr10:46508710-46508954
chr10	CG	SV	46508391	46509269	21	.	.	ID=2306;Type=complex;Left=chr10:46508391-46508852+;Right=chr10:46508719-46509269+;Distance=328;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	46508391	46508852	21	+	.	ID=2306;Type=complex;Left=chr10:46508391-46508852;Right=chr10:46508719-46509269
chr10	CG	SV	46508719	46509269	21	+	.	ID=2306;Type=complex;Left=chr10:46508391-46508852;Right=chr10:46508719-46509269
chr10	CG	SV	47112700	47113503	41	.	.	ID=2304;Type=deletion;Left=chr10:47112700-47113214+;Right=chr10:47113192-47113503+;Distance=492;DiscordantMatePairAlignments=41;LeftRepeat=(CCCTAA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem CTAACT;RightRepeat=(CCCTAA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem CTAACT;LeftGenes=;RightGenes=;XRef=rs71702761 (chr10:47112617-47113103);Frequency=1.00
chr10	CG	SV	47112700	47113214	41	+	.	ID=2304;Type=deletion;Left=chr10:47112700-47113214;Right=chr10:47113192-47113503
chr10	CG	SV	47113192	47113503	41	+	.	ID=2304;Type=deletion;Left=chr10:47112700-47113214;Right=chr10:47113192-47113503
chr10	CG	SV	47124524	51159023	17	.	.	ID=3609;Type=probable-inversion;Left=chr10:47124524-47125166+;Right=chr10:51158598-51159023-;Distance=4034499;DiscordantMatePairAlignments=17;LeftRepeat=MIRb:SINE:MIR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr10	CG	SV	47124524	47125166	17	+	.	ID=3609;Type=probable-inversion;Left=chr10:47124524-47125166;Right=chr10:51158598-51159023
chr10	CG	SV	51158598	51159023	17	+	.	ID=3609;Type=probable-inversion;Left=chr10:47124524-47125166;Right=chr10:51158598-51159023
chr10	CG	SV	49587177	49588105	18	.	.	ID=2303;Type=deletion;Left=chr10:49587177-49587806+;Right=chr10:49587500-49588105+;Distance=323;DiscordantMatePairAlignments=18;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_020945:+;RightGenes=NM_020945:+;XRef=rs10705872 (chr10:49587177-49587500);Frequency=1.00
chr10	CG	SV	49587177	49587806	18	+	.	ID=2303;Type=deletion;Left=chr10:49587177-49587806;Right=chr10:49587500-49588105
chr10	CG	SV	49587500	49588105	18	+	.	ID=2303;Type=deletion;Left=chr10:49587177-49587806;Right=chr10:49587500-49588105
chr10	CG	SV	52657709	52930781	62	.	.	ID=2301;Type=deletion;Left=chr10:52657709-52658265+;Right=chr10:52930251-52930781+;Distance=272542;DiscordantMatePairAlignments=62;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001098512:+;NM_006258:+;RightGenes=NM_001098512:+;NM_006258:+;XRef=;Frequency=0.00
chr10	CG	SV	52657709	52658265	62	+	.	ID=2301;Type=deletion;Left=chr10:52657709-52658265;Right=chr10:52930251-52930781
chr10	CG	SV	52930251	52930781	62	+	.	ID=2301;Type=deletion;Left=chr10:52657709-52658265;Right=chr10:52930251-52930781
chr10	CG	SV	54453548	54459356	32	.	.	ID=2297;Type=deletion;Left=chr10:54453548-54453971+;Right=chr10:54458835-54459356+;Distance=5287;DiscordantMatePairAlignments=32;LeftRepeat=LTR8:LTR:ERV1;Self chain;RightRepeat=HERV30:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr10	CG	SV	54453548	54453971	32	+	.	ID=2297;Type=deletion;Left=chr10:54453548-54453971;Right=chr10:54458835-54459356
chr10	CG	SV	54458835	54459356	32	+	.	ID=2297;Type=deletion;Left=chr10:54453548-54453971;Right=chr10:54458835-54459356
chr10	CG	SV	58927377	58928372	35	.	.	ID=254;Type=probable-inversion;Left=chr10:58927377-58927664-;Right=chr10:58927992-58928372+;Distance=328;DiscordantMatePairAlignments=35;LeftRepeat=Self chain;RightRepeat=MIRb:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr10	CG	SV	58927377	58927664	35	-	.	ID=254;Type=probable-inversion;Left=chr10:58927377-58927664;Right=chr10:58927992-58928372
chr10	CG	SV	58927992	58928372	35	-	.	ID=254;Type=probable-inversion;Left=chr10:58927377-58927664;Right=chr10:58927992-58928372
chr10	CG	SV	59943899	72057756	44	.	.	ID=3606;Type=complex;Left=chr10:59943899-59944447+;Right=chr10:72057277-72057756-;Distance=12113857;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;RightRepeat=L1MB7:LINE:L1;Self chain;LeftGenes=NM_001080512:+;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	59943899	59944447	44	+	.	ID=3606;Type=complex;Left=chr10:59943899-59944447;Right=chr10:72057277-72057756
chr10	CG	SV	72057277	72057756	44	+	.	ID=3606;Type=complex;Left=chr10:59943899-59944447;Right=chr10:72057277-72057756
chr10	CG	SV	62860591	72058330	17	.	.	ID=2291;Type=complex;Left=chr10:62860591-62861065+;Right=chr10:72057866-72058330+;Distance=9197275;DiscordantMatePairAlignments=17;LeftRepeat=L1MC1:LINE:L1;Self chain;RightRepeat=L1MB7:LINE:L1;Self chain;LeftGenes=NM_178505:-;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	62860591	62861065	17	+	.	ID=2291;Type=complex;Left=chr10:62860591-62861065;Right=chr10:72057866-72058330
chr10	CG	SV	72057866	72058330	17	+	.	ID=2291;Type=complex;Left=chr10:62860591-62861065;Right=chr10:72057866-72058330
chr10	CG	SV	67098537	67099215	18	.	.	ID=252;Type=probable-inversion;Left=chr10:67098537-67098629-;Right=chr10:67098743-67099215+;Distance=114;DiscordantMatePairAlignments=18;LeftRepeat=MER87:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	67098537	67098629	18	-	.	ID=252;Type=probable-inversion;Left=chr10:67098537-67098629;Right=chr10:67098743-67099215
chr10	CG	SV	67098743	67099215	18	-	.	ID=252;Type=probable-inversion;Left=chr10:67098537-67098629;Right=chr10:67098743-67099215
chr10	CG	SV	75474370	75755170	14	.	.	ID=2290;Type=deletion;Left=chr10:75474370-75474616+;Right=chr10:75754722-75755170+;Distance=280352;DiscordantMatePairAlignments=14;LeftRepeat=L1ME3B:LINE:L1;Self chain;RightRepeat=L1MA6:LINE:L1;Self chain;LeftGenes=NM_003373:+;NM_014000:+;RightGenes=NM_001123:+;NM_006721:+;XRef=;Frequency=0.00
chr10	CG	SV	75474370	75474616	14	+	.	ID=2290;Type=deletion;Left=chr10:75474370-75474616;Right=chr10:75754722-75755170
chr10	CG	SV	75754722	75755170	14	+	.	ID=2290;Type=deletion;Left=chr10:75474370-75474616;Right=chr10:75754722-75755170
chr10	CG	SV	77925584	77931494	37	.	.	ID=2289;Type=deletion;Left=chr10:77925584-77925899+;Right=chr10:77931031-77931494+;Distance=5447;DiscordantMatePairAlignments=37;LeftRepeat=L1MD:LINE:L1;Self chain;RightRepeat=L1PA16:LINE:L1;Self chain;LeftGenes=NM_032024:+;RightGenes=NM_032024:+;XRef=;Frequency=1.00
chr10	CG	SV	77925584	77925899	37	+	.	ID=2289;Type=deletion;Left=chr10:77925584-77925899;Right=chr10:77931031-77931494
chr10	CG	SV	77931031	77931494	37	+	.	ID=2289;Type=deletion;Left=chr10:77925584-77925899;Right=chr10:77931031-77931494
chr10	CG	SV	80762188	80763305	110	.	.	ID=2286;Type=deletion;Left=chr10:80762188-80762705+;Right=chr10:80762786-80763305+;Distance=598;DiscordantMatePairAlignments=110;LeftRepeat=Self chain;RightRepeat=L1ME3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr10	CG	SV	80762188	80762705	110	+	.	ID=2286;Type=deletion;Left=chr10:80762188-80762705;Right=chr10:80762786-80763305
chr10	CG	SV	80762786	80763305	110	+	.	ID=2286;Type=deletion;Left=chr10:80762188-80762705;Right=chr10:80762786-80763305
chr10	CG	SV	84227963	84228985	66	.	.	ID=2284;Type=deletion;Left=chr10:84227963-84228595+;Right=chr10:84228456-84228985+;Distance=493;DiscordantMatePairAlignments=66;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;RightGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;XRef=rs66512026 (chr10:84227952-84228445);Frequency=0.82
chr10	CG	SV	84227963	84228595	66	+	.	ID=2284;Type=deletion;Left=chr10:84227963-84228595;Right=chr10:84228456-84228985
chr10	CG	SV	84228456	84228985	66	+	.	ID=2284;Type=deletion;Left=chr10:84227963-84228595;Right=chr10:84228456-84228985
chr10	CG	SV	89265777	89266797	43	.	.	ID=2283;Type=deletion;Left=chr10:89265777-89266318+;Right=chr10:89266548-89266797+;Distance=771;DiscordantMatePairAlignments=43;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_004897:+;RightGenes=NM_004897:+;XRef=;Frequency=0.71
chr10	CG	SV	89265777	89266318	43	+	.	ID=2283;Type=deletion;Left=chr10:89265777-89266318;Right=chr10:89266548-89266797
chr10	CG	SV	89266548	89266797	43	+	.	ID=2283;Type=deletion;Left=chr10:89265777-89266318;Right=chr10:89266548-89266797
chr10	CG	SV	94124579	94128014	27	.	.	ID=2281;Type=deletion;Left=chr10:94124579-94125085+;Right=chr10:94127633-94128014+;Distance=3054;DiscordantMatePairAlignments=27;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=rs66665405 (chr10:94124594-94127633);Frequency=1.00
chr10	CG	SV	94124579	94125085	27	+	.	ID=2281;Type=deletion;Left=chr10:94124579-94125085;Right=chr10:94127633-94128014
chr10	CG	SV	94127633	94128014	27	+	.	ID=2281;Type=deletion;Left=chr10:94124579-94125085;Right=chr10:94127633-94128014
chr10	CG	SV	95535467	95537084	86	.	.	ID=2280;Type=deletion;Left=chr10:95535467-95535811+;Right=chr10:95536485-95537084+;Distance=1018;DiscordantMatePairAlignments=86;LeftRepeat=L4:LINE:RTE;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=NM_005097:+;RightGenes=NM_005097:+;XRef=;Frequency=1.00
chr10	CG	SV	95535467	95535811	86	+	.	ID=2280;Type=deletion;Left=chr10:95535467-95535811;Right=chr10:95536485-95537084
chr10	CG	SV	95536485	95537084	86	+	.	ID=2280;Type=deletion;Left=chr10:95535467-95535811;Right=chr10:95536485-95537084
chr10	CG	SV	97196763	97198015	26	.	.	ID=971;Type=distal-duplication;Left=chr10:97196763-97196904-;Right=chr10:97197311-97198015-;Distance=1111;DiscordantMatePairAlignments=26;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_015385:-;NM_024991:-;RightGenes=NM_015385:-;NM_024991:-;XRef=;Frequency=0.76
chr10	CG	SV	97196763	97196904	26	-	.	ID=971;Type=distal-duplication;Left=chr10:97196763-97196904;Right=chr10:97197311-97198015
chr10	CG	SV	97197311	97198015	26	-	.	ID=971;Type=distal-duplication;Left=chr10:97196763-97196904;Right=chr10:97197311-97198015
chr10	CG	SV	97197045	97198672	36	.	.	ID=2279;Type=distal-duplication;Left=chr10:97197045-97197316+;Right=chr10:97198018-97198672+;Distance=973;DiscordantMatePairAlignments=36;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=NM_015385:-;NM_024991:-;RightGenes=NM_015385:-;NM_024991:-;XRef=rs71977870 (chr10:97197044-97198017);Frequency=0.76
chr10	CG	SV	97197045	97197316	36	+	.	ID=2279;Type=distal-duplication;Left=chr10:97197045-97197316;Right=chr10:97198018-97198672
chr10	CG	SV	97198018	97198672	36	+	.	ID=2279;Type=distal-duplication;Left=chr10:97197045-97197316;Right=chr10:97198018-97198672
chr10	CG	SV	99024863	99027921	229	.	.	ID=2278;Type=deletion;Left=chr10:99024863-99025504+;Right=chr10:99027397-99027921+;Distance=2534;DiscordantMatePairAlignments=229;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=NM_032900:-;RightGenes=NM_032900:-;XRef=rs67953540 (chr10:99024853-99027387);Frequency=1.00
chr10	CG	SV	99024863	99025504	229	+	.	ID=2278;Type=deletion;Left=chr10:99024863-99025504;Right=chr10:99027397-99027921
chr10	CG	SV	99027397	99027921	229	+	.	ID=2278;Type=deletion;Left=chr10:99024863-99025504;Right=chr10:99027397-99027921
chr10	CG	SV	107242992	107243918	11	.	.	ID=2276;Type=deletion;Left=chr10:107242992-107243554+;Right=chr10:107243345-107243918+;Distance=353;DiscordantMatePairAlignments=11;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67319612 (chr10:107242992-107243345);Frequency=0.76
chr10	CG	SV	107242992	107243554	11	+	.	ID=2276;Type=deletion;Left=chr10:107242992-107243554;Right=chr10:107243345-107243918
chr10	CG	SV	107243345	107243918	11	+	.	ID=2276;Type=deletion;Left=chr10:107242992-107243554;Right=chr10:107243345-107243918
chr10	CG	SV	107940674	107942266	182	.	.	ID=2275;Type=deletion;Left=chr10:107940674-107941218+;Right=chr10:107941587-107942266+;Distance=913;DiscordantMatePairAlignments=182;LeftRepeat=MER5A1:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67619770 (chr10:107940674-107941587);Frequency=0.94
chr10	CG	SV	107940674	107941218	182	+	.	ID=2275;Type=deletion;Left=chr10:107940674-107941218;Right=chr10:107941587-107942266
chr10	CG	SV	107941587	107942266	182	+	.	ID=2275;Type=deletion;Left=chr10:107940674-107941218;Right=chr10:107941587-107942266
chr10	CG	SV	108020311	108023030	53	.	.	ID=2274;Type=deletion;Left=chr10:108020311-108020802+;Right=chr10:108022535-108023030+;Distance=2224;DiscordantMatePairAlignments=53;LeftRepeat=MER52-int:LTR:ERV1;RightRepeat=MER52-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr10	CG	SV	108020311	108020802	53	+	.	ID=2274;Type=deletion;Left=chr10:108020311-108020802;Right=chr10:108022535-108023030
chr10	CG	SV	108022535	108023030	53	+	.	ID=2274;Type=deletion;Left=chr10:108020311-108020802;Right=chr10:108022535-108023030
chr10	CG	SV	111562110	111568832	83	.	.	ID=2272;Type=deletion;Left=chr10:111562110-111562721+;Right=chr10:111568216-111568832+;Distance=6106;DiscordantMatePairAlignments=83;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66614434 (chr10:111562100-111568206);Frequency=1.00
chr10	CG	SV	111562110	111562721	83	+	.	ID=2272;Type=deletion;Left=chr10:111562110-111562721;Right=chr10:111568216-111568832
chr10	CG	SV	111568216	111568832	83	+	.	ID=2272;Type=deletion;Left=chr10:111562110-111562721;Right=chr10:111568216-111568832
chr10	CG	SV	114102173	114107198	90	.	.	ID=2271;Type=deletion;Left=chr10:114102173-114102776+;Right=chr10:114106650-114107198+;Distance=4477;DiscordantMatePairAlignments=90;LeftRepeat=AluSx:SINE:Alu;RightRepeat=MIRm:SINE:MIR;LeftGenes=NR_028134:-;RightGenes=;XRef=rs68033286 (chr10:114102171-114106648);Frequency=0.88
chr10	CG	SV	114102173	114102776	90	+	.	ID=2271;Type=deletion;Left=chr10:114102173-114102776;Right=chr10:114106650-114107198
chr10	CG	SV	114106650	114107198	90	+	.	ID=2271;Type=deletion;Left=chr10:114102173-114102776;Right=chr10:114106650-114107198
chr10	CG	SV	119189274	119191809	83	.	.	ID=2268;Type=deletion;Left=chr10:119189274-119189823+;Right=chr10:119191396-119191809+;Distance=2122;DiscordantMatePairAlignments=83;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	119189274	119189823	83	+	.	ID=2268;Type=deletion;Left=chr10:119189274-119189823;Right=chr10:119191396-119191809
chr10	CG	SV	119191396	119191809	83	+	.	ID=2268;Type=deletion;Left=chr10:119189274-119189823;Right=chr10:119191396-119191809
chr10	CG	SV	119624273	119625267	11	.	.	ID=2267;Type=deletion;Left=chr10:119624273-119624851+;Right=chr10:119624604-119625267+;Distance=331;DiscordantMatePairAlignments=11;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71389988 (chr10:119624273-119624604);Frequency=1.00
chr10	CG	SV	119624273	119624851	11	+	.	ID=2267;Type=deletion;Left=chr10:119624273-119624851;Right=chr10:119624604-119625267
chr10	CG	SV	119624604	119625267	11	+	.	ID=2267;Type=deletion;Left=chr10:119624273-119624851;Right=chr10:119624604-119625267
chr10	CG	SV	122216763	122219317	52	.	.	ID=2266;Type=deletion;Left=chr10:122216763-122217199+;Right=chr10:122218911-122219317+;Distance=2148;DiscordantMatePairAlignments=52;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_001030059:+;RightGenes=NM_001030059:+;XRef=rs66889305 (chr10:122216588-122218737);Frequency=1.00
chr10	CG	SV	122216763	122217199	52	+	.	ID=2266;Type=deletion;Left=chr10:122216763-122217199;Right=chr10:122218911-122219317
chr10	CG	SV	122218911	122219317	52	+	.	ID=2266;Type=deletion;Left=chr10:122216763-122217199;Right=chr10:122218911-122219317
chr10	CG	SV	127180184	127181244	60	.	.	ID=251;Type=complex;Left=chr10:127180184-127180407-;Right=chr10:127180684-127181244+;Distance=277;DiscordantMatePairAlignments=60;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr10	CG	SV	127180184	127180407	60	-	.	ID=251;Type=complex;Left=chr10:127180184-127180407;Right=chr10:127180684-127181244
chr10	CG	SV	127180684	127181244	60	-	.	ID=251;Type=complex;Left=chr10:127180184-127180407;Right=chr10:127180684-127181244
chr10	CG	SV	127180959	127187217	142	.	.	ID=3602;Type=complex;Left=chr10:127180959-127181513+;Right=chr10:127186659-127187217-;Distance=6258;DiscordantMatePairAlignments=142;LeftRepeat=Alu:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr10	CG	SV	127180959	127181513	142	+	.	ID=3602;Type=complex;Left=chr10:127180959-127181513;Right=chr10:127186659-127187217
chr10	CG	SV	127186659	127187217	142	+	.	ID=3602;Type=complex;Left=chr10:127180959-127181513;Right=chr10:127186659-127187217
chr10	CG	SV	127181647	127187587	42	.	.	ID=2262;Type=complex;Left=chr10:127181647-127182268+;Right=chr10:127187226-127187587+;Distance=5579;DiscordantMatePairAlignments=42;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66681237 (chr10:127181645-127187224);Frequency=0.82
chr10	CG	SV	127181647	127182268	42	+	.	ID=2262;Type=complex;Left=chr10:127181647-127182268;Right=chr10:127187226-127187587
chr10	CG	SV	127187226	127187587	42	+	.	ID=2262;Type=complex;Left=chr10:127181647-127182268;Right=chr10:127187226-127187587
chr10	CG	SV	127573311	127580007	23	.	.	ID=2261;Type=deletion;Left=chr10:127573311-127573765+;Right=chr10:127579340-127580007+;Distance=6029;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=NM_145235:+;XRef=;Frequency=0.47
chr10	CG	SV	127573311	127573765	23	+	.	ID=2261;Type=deletion;Left=chr10:127573311-127573765;Right=chr10:127579340-127580007
chr10	CG	SV	127579340	127580007	23	+	.	ID=2261;Type=deletion;Left=chr10:127573311-127573765;Right=chr10:127579340-127580007
chr10	CG	SV	127735173	127736505	141	.	.	ID=2260;Type=deletion;Left=chr10:127735173-127735804+;Right=chr10:127735974-127736505+;Distance=801;DiscordantMatePairAlignments=141;LeftRepeat=;RightRepeat=;LeftGenes=NM_003474:-;NM_021641:-;RightGenes=NM_003474:-;NM_021641:-;XRef=rs67650775 (chr10:127735174-127735974);Frequency=0.94
chr10	CG	SV	127735173	127735804	141	+	.	ID=2260;Type=deletion;Left=chr10:127735173-127735804;Right=chr10:127735974-127736505
chr10	CG	SV	127735974	127736505	141	+	.	ID=2260;Type=deletion;Left=chr10:127735173-127735804;Right=chr10:127735974-127736505
chr10	CG	SV	132048555	132049455	20	.	.	ID=2257;Type=deletion;Left=chr10:132048555-132049131+;Right=chr10:132048967-132049455+;Distance=412;DiscordantMatePairAlignments=20;LeftRepeat=(TC)n:Simple_repeat:Simple_repeat;Tandem CTCTCT;Tandem period 10;Tandem period 14;Tandem period 8;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs33996726 (chr10:132048415-132048801);Frequency=1.00
chr10	CG	SV	132048555	132049131	20	+	.	ID=2257;Type=deletion;Left=chr10:132048555-132049131;Right=chr10:132048967-132049455
chr10	CG	SV	132048967	132049455	20	+	.	ID=2257;Type=deletion;Left=chr10:132048555-132049131;Right=chr10:132048967-132049455
chr10	CG	SV	132147796	132148581	14	.	.	ID=2256;Type=deletion;Left=chr10:132147796-132148280+;Right=chr10:132148340-132148581+;Distance=544;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 26;RightRepeat=Self chain;Tandem period 26;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr10	CG	SV	132147796	132148280	14	+	.	ID=2256;Type=deletion;Left=chr10:132147796-132148280;Right=chr10:132148340-132148581
chr10	CG	SV	132148340	132148581	14	+	.	ID=2256;Type=deletion;Left=chr10:132147796-132148280;Right=chr10:132148340-132148581
chr10	CG	SV	133501903	133502333	29	.	.	ID=966;Type=tandem-duplication;Left=chr10:133501903-133502101-;Right=chr10:133502130-133502333-;Distance=232;DiscordantMatePairAlignments=29;LeftRepeat=L1MD2:LINE:L1;Self chain;RightRepeat=L1MD2:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr10	CG	SV	133501903	133502101	29	-	.	ID=966;Type=tandem-duplication;Left=chr10:133501903-133502101;Right=chr10:133502130-133502333
chr10	CG	SV	133502130	133502333	29	-	.	ID=966;Type=tandem-duplication;Left=chr10:133501903-133502101;Right=chr10:133502130-133502333
chr10	CG	SV	134577615	134578990	71	.	.	ID=2254;Type=deletion;Left=chr10:134577615-134578180+;Right=chr10:134578341-134578990+;Distance=726;DiscordantMatePairAlignments=71;LeftRepeat=Self chain;Tandem period 33;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr10	CG	SV	134577615	134578180	71	+	.	ID=2254;Type=deletion;Left=chr10:134577615-134578180;Right=chr10:134578341-134578990
chr10	CG	SV	134578341	134578990	71	+	.	ID=2254;Type=deletion;Left=chr10:134577615-134578180;Right=chr10:134578341-134578990
chr10	CG	SV	134954790	134956448	141	.	.	ID=2251;Type=deletion;Left=chr10:134954790-134955469+;Right=chr10:134955981-134956448+;Distance=1191;DiscordantMatePairAlignments=141;LeftRepeat=Self chain;Tandem period 188;Tandem period 94;RightRepeat=Self chain;LeftGenes=NM_006659:-;RightGenes=NM_006659:-;XRef=rs72187097 (chr10:134954841-134955956);Frequency=0.88
chr10	CG	SV	134954790	134955469	141	+	.	ID=2251;Type=deletion;Left=chr10:134954790-134955469;Right=chr10:134955981-134956448
chr10	CG	SV	134955981	134956448	141	+	.	ID=2251;Type=deletion;Left=chr10:134954790-134955469;Right=chr10:134955981-134956448
chr11	CG	SV	1169071	1170150	25	.	.	ID=959;Type=tandem-duplication;Left=chr11:1169071-1169425-;Right=chr11:1169683-1170150-;Distance=725;DiscordantMatePairAlignments=25;LeftRepeat=(CCA)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 24;Tandem period 48;Tandem period 96;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	1169071	1169425	25	-	.	ID=959;Type=tandem-duplication;Left=chr11:1169071-1169425;Right=chr11:1169683-1170150
chr11	CG	SV	1169683	1170150	25	-	.	ID=959;Type=tandem-duplication;Left=chr11:1169071-1169425;Right=chr11:1169683-1170150
chr11	CG	SV	1619557	1620583	91	.	.	ID=2247;Type=deletion;Left=chr11:1619557-1620186+;Right=chr11:1620138-1620583+;Distance=581;DiscordantMatePairAlignments=91;LeftRepeat=(CACCC)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 16;Tandem period 31;RightRepeat=(CACCC)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 16;Tandem period 31;LeftGenes=NM_053005:-;RightGenes=NM_053005:-;XRef=;Frequency=0.94
chr11	CG	SV	1619557	1620186	91	+	.	ID=2247;Type=deletion;Left=chr11:1619557-1620186;Right=chr11:1620138-1620583
chr11	CG	SV	1620138	1620583	91	+	.	ID=2247;Type=deletion;Left=chr11:1619557-1620186;Right=chr11:1620138-1620583
chr11	CG	SV	1871855	1894138	61	.	.	ID=2246;Type=deletion;Left=chr11:1871855-1872359+;Right=chr11:1893533-1894138+;Distance=21678;DiscordantMatePairAlignments=61;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	1871855	1872359	61	+	.	ID=2246;Type=deletion;Left=chr11:1871855-1872359;Right=chr11:1893533-1894138
chr11	CG	SV	1893533	1894138	61	+	.	ID=2246;Type=deletion;Left=chr11:1871855-1872359;Right=chr11:1893533-1894138
chr11	CG	SV	5716663	5719440	37	.	.	ID=2243;Type=deletion;Left=chr11:5716663-5717116+;Right=chr11:5718941-5719440+;Distance=2278;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr11	CG	SV	5716663	5717116	37	+	.	ID=2243;Type=deletion;Left=chr11:5716663-5717116;Right=chr11:5718941-5719440
chr11	CG	SV	5718941	5719440	37	+	.	ID=2243;Type=deletion;Left=chr11:5716663-5717116;Right=chr11:5718941-5719440
chr11	CG	SV	5741151	5766364	27	.	.	ID=2242;Type=deletion;Left=chr11:5741151-5741475+;Right=chr11:5765860-5766364+;Distance=24709;DiscordantMatePairAlignments=27;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001001913:-;XRef=;Frequency=0.47
chr11	CG	SV	5741151	5741475	27	+	.	ID=2242;Type=deletion;Left=chr11:5741151-5741475;Right=chr11:5765860-5766364
chr11	CG	SV	5765860	5766364	27	+	.	ID=2242;Type=deletion;Left=chr11:5741151-5741475;Right=chr11:5765860-5766364
chr11	CG	SV	7673491	7674323	15	.	.	ID=2240;Type=deletion;Left=chr11:7673491-7674203+;Right=chr11:7673807-7674323+;Distance=316;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_198185:-;RightGenes=NM_198185:-;XRef=rs6144199 (chr11:7673479-7673795);Frequency=1.00
chr11	CG	SV	7673491	7674203	15	+	.	ID=2240;Type=deletion;Left=chr11:7673491-7674203;Right=chr11:7673807-7674323
chr11	CG	SV	7673807	7674323	15	+	.	ID=2240;Type=deletion;Left=chr11:7673491-7674203;Right=chr11:7673807-7674323
chr11	CG	SV	9280318	9281646	19	.	.	ID=2239;Type=deletion;Left=chr11:9280318-9280869+;Right=chr11:9281326-9281646+;Distance=1008;DiscordantMatePairAlignments=19;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001165030:-;NM_015012:-;NR_028491:-;RightGenes=NM_001165030:-;NM_015012:-;NR_028491:-;XRef=rs72400718 (chr11:9280262-9281272);Frequency=0.71
chr11	CG	SV	9280318	9280869	19	+	.	ID=2239;Type=deletion;Left=chr11:9280318-9280869;Right=chr11:9281326-9281646
chr11	CG	SV	9281326	9281646	19	+	.	ID=2239;Type=deletion;Left=chr11:9280318-9280869;Right=chr11:9281326-9281646
chr11	CG	SV	19708432	19714663	55	.	.	ID=2233;Type=deletion;Left=chr11:19708432-19708989+;Right=chr11:19714181-19714663+;Distance=5749;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=;LeftGenes=NM_001111018:+;NM_145117:+;NM_182964:+;RightGenes=NM_001111018:+;NM_145117:+;NM_182964:+;XRef=;Frequency=0.00
chr11	CG	SV	19708432	19708989	55	+	.	ID=2233;Type=deletion;Left=chr11:19708432-19708989;Right=chr11:19714181-19714663
chr11	CG	SV	19714181	19714663	55	+	.	ID=2233;Type=deletion;Left=chr11:19708432-19708989;Right=chr11:19714181-19714663
chr11	CG	SV	20801133	20807017	91	.	.	ID=2232;Type=deletion;Left=chr11:20801133-20801704+;Right=chr11:20806526-20807017+;Distance=5393;DiscordantMatePairAlignments=91;LeftRepeat=;RightRepeat=;LeftGenes=NM_006157:+;NM_201551:+;RightGenes=NM_006157:+;NM_201551:+;XRef=;Frequency=0.20
chr11	CG	SV	20801133	20801704	91	+	.	ID=2232;Type=deletion;Left=chr11:20801133-20801704;Right=chr11:20806526-20807017
chr11	CG	SV	20806526	20807017	91	+	.	ID=2232;Type=deletion;Left=chr11:20801133-20801704;Right=chr11:20806526-20807017
chr11	CG	SV	24399729	24409336	74	.	.	ID=2231;Type=deletion;Left=chr11:24399729-24400212+;Right=chr11:24408863-24409336+;Distance=9134;DiscordantMatePairAlignments=74;LeftRepeat=;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr11	CG	SV	24399729	24400212	74	+	.	ID=2231;Type=deletion;Left=chr11:24399729-24400212;Right=chr11:24408863-24409336
chr11	CG	SV	24408863	24409336	74	+	.	ID=2231;Type=deletion;Left=chr11:24399729-24400212;Right=chr11:24408863-24409336
chr11	CG	SV	29096079	29097179	11	.	.	ID=2228;Type=deletion;Left=chr11:29096079-29096580+;Right=chr11:29097028-29097179+;Distance=949;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr11	CG	SV	29096079	29096580	11	+	.	ID=2228;Type=deletion;Left=chr11:29096079-29096580;Right=chr11:29097028-29097179
chr11	CG	SV	29097028	29097179	11	+	.	ID=2228;Type=deletion;Left=chr11:29096079-29096580;Right=chr11:29097028-29097179
chr11	CG	SV	29924155	29925412	21	.	.	ID=2227;Type=deletion;Left=chr11:29924155-29924743+;Right=chr11:29925043-29925412+;Distance=888;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72176999 (chr11:29924154-29925042);Frequency=0.71
chr11	CG	SV	29924155	29924743	21	+	.	ID=2227;Type=deletion;Left=chr11:29924155-29924743;Right=chr11:29925043-29925412
chr11	CG	SV	29925043	29925412	21	+	.	ID=2227;Type=deletion;Left=chr11:29924155-29924743;Right=chr11:29925043-29925412
chr11	CG	SV	33494263	33495183	10	.	.	ID=2225;Type=deletion;Left=chr11:33494263-33494763+;Right=chr11:33494586-33495183+;Distance=323;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71016499 (chr11:33494263-33494586);Frequency=0.71
chr11	CG	SV	33494263	33494763	10	+	.	ID=2225;Type=deletion;Left=chr11:33494263-33494763;Right=chr11:33494586-33495183
chr11	CG	SV	33494586	33495183	10	+	.	ID=2225;Type=deletion;Left=chr11:33494263-33494763;Right=chr11:33494586-33495183
chr11	CG	SV	41118872	41123605	18	.	.	ID=3600;Type=probable-inversion;Left=chr11:41118872-41119174+;Right=chr11:41123147-41123605-;Distance=4733;DiscordantMatePairAlignments=18;LeftRepeat=MER92B:LTR:ERV1;Self chain;RightRepeat=MER58A:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.25
chr11	CG	SV	41118872	41119174	18	+	.	ID=3600;Type=probable-inversion;Left=chr11:41118872-41119174;Right=chr11:41123147-41123605
chr11	CG	SV	41123147	41123605	18	+	.	ID=3600;Type=probable-inversion;Left=chr11:41118872-41119174;Right=chr11:41123147-41123605
chr11	CG	SV	43848420	43849374	10	.	.	ID=2220;Type=deletion;Left=chr11:43848420-43849024+;Right=chr11:43848756-43849374+;Distance=336;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs10525689 (chr11:43848420-43848756);Frequency=1.00
chr11	CG	SV	43848420	43849024	10	+	.	ID=2220;Type=deletion;Left=chr11:43848420-43849024;Right=chr11:43848756-43849374
chr11	CG	SV	43848756	43849374	10	+	.	ID=2220;Type=deletion;Left=chr11:43848420-43849024;Right=chr11:43848756-43849374
chr11	CG	SV	45386425	45388654	65	.	.	ID=2219;Type=deletion;Left=chr11:45386425-45386986+;Right=chr11:45388192-45388654+;Distance=1767;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs71940309 (chr11:45386422-45388189);Frequency=0.94
chr11	CG	SV	45386425	45386986	65	+	.	ID=2219;Type=deletion;Left=chr11:45386425-45386986;Right=chr11:45388192-45388654
chr11	CG	SV	45388192	45388654	65	+	.	ID=2219;Type=deletion;Left=chr11:45386425-45386986;Right=chr11:45388192-45388654
chr11	CG	SV	47844243	47845179	31	.	.	ID=2217;Type=deletion;Left=chr11:47844243-47844699+;Right=chr11:47844770-47845179+;Distance=527;DiscordantMatePairAlignments=31;LeftRepeat=AluSp:SINE:Alu;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr11	CG	SV	47844243	47844699	31	+	.	ID=2217;Type=deletion;Left=chr11:47844243-47844699;Right=chr11:47844770-47845179
chr11	CG	SV	47844770	47845179	31	+	.	ID=2217;Type=deletion;Left=chr11:47844243-47844699;Right=chr11:47844770-47845179
chr11	CG	SV	48076645	48077424	12	.	.	ID=2216;Type=deletion;Left=chr11:48076645-48077274+;Right=chr11:48076954-48077424+;Distance=309;DiscordantMatePairAlignments=12;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=;LeftGenes=NM_001098503:+;NM_002843:+;RightGenes=NM_001098503:+;NM_002843:+;XRef=rs72286428 (chr11:48076637-48076946);Frequency=0.94
chr11	CG	SV	48076645	48077274	12	+	.	ID=2216;Type=deletion;Left=chr11:48076645-48077274;Right=chr11:48076954-48077424
chr11	CG	SV	48076954	48077424	12	+	.	ID=2216;Type=deletion;Left=chr11:48076645-48077274;Right=chr11:48076954-48077424
chr11	CG	SV	48324097	48330741	72	.	.	ID=2214;Type=deletion;Left=chr11:48324097-48324653+;Right=chr11:48330278-48330741+;Distance=6181;DiscordantMatePairAlignments=72;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001005513:-;RightGenes=NM_001005513:-;XRef=rs71787435 (chr11:48324104-48330285);Frequency=1.00
chr11	CG	SV	48324097	48324653	72	+	.	ID=2214;Type=deletion;Left=chr11:48324097-48324653;Right=chr11:48330278-48330741
chr11	CG	SV	48330278	48330741	72	+	.	ID=2214;Type=deletion;Left=chr11:48324097-48324653;Right=chr11:48330278-48330741
chr11	CG	SV	57723924	78046672	44	.	.	ID=3589;Type=probable-inversion;Left=chr11:57723924-57724392+;Right=chr11:78046505-78046672-;Distance=20322748;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001098816:-;XRef=;Frequency=0.65
chr11	CG	SV	57723924	57724392	44	+	.	ID=3589;Type=probable-inversion;Left=chr11:57723924-57724392;Right=chr11:78046505-78046672
chr11	CG	SV	78046505	78046672	44	+	.	ID=3589;Type=probable-inversion;Left=chr11:57723924-57724392;Right=chr11:78046505-78046672
chr11	CG	SV	57923575	57925274	79	.	.	ID=2202;Type=deletion;Left=chr11:57923575-57924108+;Right=chr11:57924743-57925274+;Distance=1168;DiscordantMatePairAlignments=79;LeftRepeat=(TTTTA)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72147631 (chr11:57923575-57924743);Frequency=0.71
chr11	CG	SV	57923575	57924108	79	+	.	ID=2202;Type=deletion;Left=chr11:57923575-57924108;Right=chr11:57924743-57925274
chr11	CG	SV	57924743	57925274	79	+	.	ID=2202;Type=deletion;Left=chr11:57923575-57924108;Right=chr11:57924743-57925274
chr11	CG	SV	58350764	58353018	26	.	.	ID=2201;Type=deletion;Left=chr11:58350764-58351117+;Right=chr11:58352595-58353018+;Distance=1831;DiscordantMatePairAlignments=26;LeftRepeat=MER4A1-int:LTR:ERV1;Self chain;RightRepeat=MER4A1:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr11	CG	SV	58350764	58351117	26	+	.	ID=2201;Type=deletion;Left=chr11:58350764-58351117;Right=chr11:58352595-58353018
chr11	CG	SV	58352595	58353018	26	+	.	ID=2201;Type=deletion;Left=chr11:58350764-58351117;Right=chr11:58352595-58353018
chr11	CG	SV	58388350	58393586	24	.	.	ID=2200;Type=deletion;Left=chr11:58388350-58388906+;Right=chr11:58393131-58393586+;Distance=4781;DiscordantMatePairAlignments=24;LeftRepeat=L1M2:LINE:L1;Self chain;RightRepeat=LOR1-int:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	58388350	58388906	24	+	.	ID=2200;Type=deletion;Left=chr11:58388350-58388906;Right=chr11:58393131-58393586
chr11	CG	SV	58393131	58393586	24	+	.	ID=2200;Type=deletion;Left=chr11:58388350-58388906;Right=chr11:58393131-58393586
chr11	CG	SV	60328198	60328972	42	.	.	ID=2199;Type=deletion;Left=chr11:60328198-60328728+;Right=chr11:60328685-60328972+;Distance=487;DiscordantMatePairAlignments=42;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr11	CG	SV	60328198	60328728	42	+	.	ID=2199;Type=deletion;Left=chr11:60328198-60328728;Right=chr11:60328685-60328972
chr11	CG	SV	60328685	60328972	42	+	.	ID=2199;Type=deletion;Left=chr11:60328198-60328728;Right=chr11:60328685-60328972
chr11	CG	SV	63455485	63458518	27	.	.	ID=2197;Type=deletion;Left=chr11:63455485-63455941+;Right=chr11:63458230-63458518+;Distance=2745;DiscordantMatePairAlignments=27;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs67483435 (chr11:63455485-63458230);Frequency=1.00
chr11	CG	SV	63455485	63455941	27	+	.	ID=2197;Type=deletion;Left=chr11:63455485-63455941;Right=chr11:63458230-63458518
chr11	CG	SV	63458230	63458518	27	+	.	ID=2197;Type=deletion;Left=chr11:63455485-63455941;Right=chr11:63458230-63458518
chr11	CG	SV	65775274	65776457	47	.	.	ID=3588;Type=complex;Left=chr11:65775274-65775693+;Right=chr11:65775929-65776457-;Distance=1183;DiscordantMatePairAlignments=47;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr11	CG	SV	65775274	65775693	47	+	.	ID=3588;Type=complex;Left=chr11:65775274-65775693;Right=chr11:65775929-65776457
chr11	CG	SV	65775929	65776457	47	+	.	ID=3588;Type=complex;Left=chr11:65775274-65775693;Right=chr11:65775929-65776457
chr11	CG	SV	65775015	65776925	35	.	.	ID=246;Type=complex;Left=chr11:65775015-65775568-;Right=chr11:65776578-65776925+;Distance=1010;DiscordantMatePairAlignments=35;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr11	CG	SV	65775015	65775568	35	-	.	ID=246;Type=complex;Left=chr11:65775015-65775568;Right=chr11:65776578-65776925
chr11	CG	SV	65776578	65776925	35	-	.	ID=246;Type=complex;Left=chr11:65775015-65775568;Right=chr11:65776578-65776925
chr11	CG	SV	67086873	67089291	16	.	.	ID=2194;Type=deletion;Left=chr11:67086873-67087462+;Right=chr11:67089129-67089291+;Distance=2256;DiscordantMatePairAlignments=16;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	67086873	67087462	16	+	.	ID=2194;Type=deletion;Left=chr11:67086873-67087462;Right=chr11:67089129-67089291
chr11	CG	SV	67089129	67089291	16	+	.	ID=2194;Type=deletion;Left=chr11:67086873-67087462;Right=chr11:67089129-67089291
chr11	CG	SV	69110024	69111224	30	.	.	ID=2191;Type=deletion;Left=chr11:69110024-69110305+;Right=chr11:69110586-69111224+;Distance=562;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72437253 (chr11:69110024-69110586);Frequency=1.00
chr11	CG	SV	69110024	69110305	30	+	.	ID=2191;Type=deletion;Left=chr11:69110024-69110305;Right=chr11:69110586-69111224
chr11	CG	SV	69110586	69111224	30	+	.	ID=2191;Type=deletion;Left=chr11:69110024-69110305;Right=chr11:69110586-69111224
chr11	CG	SV	69367715	69368229	29	.	.	ID=2190;Type=deletion;Left=chr11:69367715-69368027+;Right=chr11:69367871-69368229+;Distance=156;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;RightRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GAT;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	69367715	69368027	29	+	.	ID=2190;Type=deletion;Left=chr11:69367715-69368027;Right=chr11:69367871-69368229
chr11	CG	SV	69367871	69368229	29	+	.	ID=2190;Type=deletion;Left=chr11:69367715-69368027;Right=chr11:69367871-69368229
chr11	CG	SV	69660203	69662621	65	.	.	ID=2189;Type=deletion;Left=chr11:69660203-69660688+;Right=chr11:69662138-69662621+;Distance=1935;DiscordantMatePairAlignments=65;LeftRepeat=Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=NM_018043:+;NR_030691:+;RightGenes=NM_018043:+;NR_030691:+;XRef=;Frequency=0.06
chr11	CG	SV	69660203	69660688	65	+	.	ID=2189;Type=deletion;Left=chr11:69660203-69660688;Right=chr11:69662138-69662621
chr11	CG	SV	69662138	69662621	65	+	.	ID=2189;Type=deletion;Left=chr11:69660203-69660688;Right=chr11:69662138-69662621
chr11	CG	SV	69894936	69895322	20	.	.	ID=944;Type=tandem-duplication;Left=chr11:69894936-69895078-;Right=chr11:69895081-69895322-;Distance=244;DiscordantMatePairAlignments=20;LeftRepeat=L1MD:LINE:L1;Self chain;Tandem period 27;RightRepeat=L1M5:LINE:L1;Self chain;Tandem period 27;LeftGenes=NM_003626:+;NM_177423:+;RightGenes=NM_003626:+;NM_177423:+;XRef=;Frequency=1.00
chr11	CG	SV	69894936	69895078	20	-	.	ID=944;Type=tandem-duplication;Left=chr11:69894936-69895078;Right=chr11:69895081-69895322
chr11	CG	SV	69895081	69895322	20	-	.	ID=944;Type=tandem-duplication;Left=chr11:69894936-69895078;Right=chr11:69895081-69895322
chr11	CG	SV	85963609	85965111	74	.	.	ID=2184;Type=deletion;Left=chr11:85963609-85964122+;Right=chr11:85964370-85965111+;Distance=761;DiscordantMatePairAlignments=74;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001014811:-;NM_001161586:-;NM_006680:-;RightGenes=NM_001014811:-;NM_001161586:-;NM_006680:-;XRef=rs71790699 (chr11:85963609-85964370);Frequency=0.18
chr11	CG	SV	85963609	85964122	74	+	.	ID=2184;Type=deletion;Left=chr11:85963609-85964122;Right=chr11:85964370-85965111
chr11	CG	SV	85964370	85965111	74	+	.	ID=2184;Type=deletion;Left=chr11:85963609-85964122;Right=chr11:85964370-85965111
chr11	CG	SV	89833356	89836186	68	.	.	ID=2183;Type=deletion;Left=chr11:89833356-89833738+;Right=chr11:89835647-89836186+;Distance=2291;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=L1MB1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr11	CG	SV	89833356	89833738	68	+	.	ID=2183;Type=deletion;Left=chr11:89833356-89833738;Right=chr11:89835647-89836186
chr11	CG	SV	89835647	89836186	68	+	.	ID=2183;Type=deletion;Left=chr11:89833356-89833738;Right=chr11:89835647-89836186
chr11	CG	SV	97753418	97754495	22	.	.	ID=2181;Type=deletion;Left=chr11:97753418-97753985+;Right=chr11:97753812-97754495+;Distance=394;DiscordantMatePairAlignments=22;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67075251 (chr11:97753418-97753812);Frequency=0.59
chr11	CG	SV	97753418	97753985	22	+	.	ID=2181;Type=deletion;Left=chr11:97753418-97753985;Right=chr11:97753812-97754495
chr11	CG	SV	97753812	97754495	22	+	.	ID=2181;Type=deletion;Left=chr11:97753418-97753985;Right=chr11:97753812-97754495
chr11	CG	SV	99195693	99196517	65	.	.	ID=3587;Type=probable-inversion;Left=chr11:99195693-99196094+;Right=chr11:99196166-99196517-;Distance=824;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=;LeftGenes=NM_014361:+;NM_175566:+;RightGenes=NM_014361:+;NM_175566:+;XRef=;Frequency=1.00
chr11	CG	SV	99195693	99196094	65	+	.	ID=3587;Type=probable-inversion;Left=chr11:99195693-99196094;Right=chr11:99196166-99196517
chr11	CG	SV	99196166	99196517	65	+	.	ID=3587;Type=probable-inversion;Left=chr11:99195693-99196094;Right=chr11:99196166-99196517
chr11	CG	SV	103772959	103778945	84	.	.	ID=2178;Type=deletion;Left=chr11:103772959-103773472+;Right=chr11:103778440-103778945+;Distance=5481;DiscordantMatePairAlignments=84;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67498645 (chr11:103772958-103778439);Frequency=0.88
chr11	CG	SV	103772959	103773472	84	+	.	ID=2178;Type=deletion;Left=chr11:103772959-103773472;Right=chr11:103778440-103778945
chr11	CG	SV	103778440	103778945	84	+	.	ID=2178;Type=deletion;Left=chr11:103772959-103773472;Right=chr11:103778440-103778945
chr11	CG	SV	113930123	113937773	88	.	.	ID=2176;Type=deletion;Left=chr11:113930123-113930731+;Right=chr11:113937140-113937773+;Distance=7017;DiscordantMatePairAlignments=88;LeftRepeat=MLT1J:LTR:MaLR;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_152315:-;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	113930123	113930731	88	+	.	ID=2176;Type=deletion;Left=chr11:113930123-113930731;Right=chr11:113937140-113937773
chr11	CG	SV	113937140	113937773	88	+	.	ID=2176;Type=deletion;Left=chr11:113930123-113930731;Right=chr11:113937140-113937773
chr11	CG	SV	113938523	130736049	124	.	.	ID=2174;Type=deletion;Left=chr11:113938523-113939091+;Right=chr11:130735676-130736049+;Distance=16797153;DiscordantMatePairAlignments=124;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	113938523	113939091	124	+	.	ID=2174;Type=deletion;Left=chr11:113938523-113939091;Right=chr11:130735676-130736049
chr11	CG	SV	130735676	130736049	124	+	.	ID=2174;Type=deletion;Left=chr11:113938523-113939091;Right=chr11:130735676-130736049
chr11	CG	SV	121852806	121855172	132	.	.	ID=2173;Type=deletion;Left=chr11:121852806-121853297+;Right=chr11:121854510-121855172+;Distance=1704;DiscordantMatePairAlignments=132;LeftRepeat=L1HS:LINE:L1;RightRepeat=GA-rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	121852806	121853297	132	+	.	ID=2173;Type=deletion;Left=chr11:121852806-121853297;Right=chr11:121854510-121855172
chr11	CG	SV	121854510	121855172	132	+	.	ID=2173;Type=deletion;Left=chr11:121852806-121853297;Right=chr11:121854510-121855172
chr11	CG	SV	122515941	122737846	77	.	.	ID=931;Type=tandem-duplication;Left=chr11:122515941-122516506-;Right=chr11:122737369-122737846-;Distance=221340;DiscordantMatePairAlignments=77;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_024769:-;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	122515941	122516506	77	-	.	ID=931;Type=tandem-duplication;Left=chr11:122515941-122516506;Right=chr11:122737369-122737846
chr11	CG	SV	122737369	122737846	77	-	.	ID=931;Type=tandem-duplication;Left=chr11:122515941-122516506;Right=chr11:122737369-122737846
chr11	CG	SV	126007804	126007877	12	.	.	ID=3586;Type=probable-inversion;Left=chr11:126007804-126008167+;Right=chr11:126007788-126007877-;Distance=73;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=NM_001161707:-;NM_032531:-;RightGenes=NM_001161707:-;NM_032531:-;XRef=;Frequency=1.00
chr11	CG	SV	126007804	126008167	12	+	.	ID=3586;Type=probable-inversion;Left=chr11:126007804-126008167;Right=chr11:126007788-126007877
chr11	CG	SV	126007788	126007877	12	+	.	ID=3586;Type=probable-inversion;Left=chr11:126007804-126008167;Right=chr11:126007788-126007877
chr11	CG	SV	128187926	128189076	40	.	.	ID=2172;Type=deletion;Left=chr11:128187926-128188400+;Right=chr11:128188620-128189076+;Distance=694;DiscordantMatePairAlignments=40;LeftRepeat=;RightRepeat=;LeftGenes=NM_001167681:+;NM_002017:+;RightGenes=;XRef=rs71759766 (chr11:128187927-128188620);Frequency=0.65
chr11	CG	SV	128187926	128188400	40	+	.	ID=2172;Type=deletion;Left=chr11:128187926-128188400;Right=chr11:128188620-128189076
chr11	CG	SV	128188620	128189076	40	+	.	ID=2172;Type=deletion;Left=chr11:128187926-128188400;Right=chr11:128188620-128189076
chr11	CG	SV	128518725	128521112	84	.	.	ID=2171;Type=deletion;Left=chr11:128518725-128519245+;Right=chr11:128520492-128521112+;Distance=1767;DiscordantMatePairAlignments=84;LeftRepeat=MER44C:DNA:MER2_type;RightRepeat=;LeftGenes=NM_001142685:-;RightGenes=NM_001142685:-;XRef=;Frequency=0.29
chr11	CG	SV	128518725	128519245	84	+	.	ID=2171;Type=deletion;Left=chr11:128518725-128519245;Right=chr11:128520492-128521112
chr11	CG	SV	128520492	128521112	84	+	.	ID=2171;Type=deletion;Left=chr11:128518725-128519245;Right=chr11:128520492-128521112
chr11	CG	SV	129730891	129735950	14	.	.	ID=2170;Type=deletion;Left=chr11:129730891-129731312+;Right=chr11:129735616-129735950+;Distance=4725;DiscordantMatePairAlignments=14;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	129730891	129731312	14	+	.	ID=2170;Type=deletion;Left=chr11:129730891-129731312;Right=chr11:129735616-129735950
chr11	CG	SV	129735616	129735950	14	+	.	ID=2170;Type=deletion;Left=chr11:129730891-129731312;Right=chr11:129735616-129735950
chr11	CG	SV	134110463	134111556	55	.	.	ID=2168;Type=deletion;Left=chr11:134110463-134111273+;Right=chr11:134111075-134111556+;Distance=612;DiscordantMatePairAlignments=55;LeftRepeat=Self chain;Tandem period 36;RightRepeat=Self chain;Tandem period 36;LeftGenes=;RightGenes=;XRef=rs67758116 (chr11:134110307-134110991);Frequency=0.29
chr11	CG	SV	134110463	134111273	55	+	.	ID=2168;Type=deletion;Left=chr11:134110463-134111273;Right=chr11:134111075-134111556
chr11	CG	SV	134111075	134111556	55	+	.	ID=2168;Type=deletion;Left=chr11:134110463-134111273;Right=chr11:134111075-134111556
chr12	CG	SV	737066	745538	17	.	.	ID=2167;Type=deletion;Left=chr12:737066-737450+;Right=chr12:745049-745538+;Distance=7983;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=;LeftGenes=NM_018979:+;RightGenes=NM_018979:+;XRef=rs71967863 (chr12:737061-745044);Frequency=0.29
chr12	CG	SV	737066	737450	17	+	.	ID=2167;Type=deletion;Left=chr12:737066-737450;Right=chr12:745049-745538
chr12	CG	SV	745049	745538	17	+	.	ID=2167;Type=deletion;Left=chr12:737066-737450;Right=chr12:745049-745538
chr12	CG	SV	899181	900364	19	.	.	ID=2166;Type=deletion;Left=chr12:899181-899561+;Right=chr12:899990-900364+;Distance=809;DiscordantMatePairAlignments=19;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_134424:-;RightGenes=NM_134424:-;XRef=;Frequency=0.82
chr12	CG	SV	899181	899561	19	+	.	ID=2166;Type=deletion;Left=chr12:899181-899561;Right=chr12:899990-900364
chr12	CG	SV	899990	900364	19	+	.	ID=2166;Type=deletion;Left=chr12:899181-899561;Right=chr12:899990-900364
chr12	CG	SV	4952480	4953789	73	.	.	ID=2164;Type=deletion;Left=chr12:4952480-4952907+;Right=chr12:4953423-4953789+;Distance=943;DiscordantMatePairAlignments=73;LeftRepeat=Self chain;Tandem period 41;RightRepeat=Self chain;Tandem period 41;LeftGenes=;RightGenes=;XRef=rs71064124 (chr12:4952495-4953234);Frequency=1.00
chr12	CG	SV	4952480	4952907	73	+	.	ID=2164;Type=deletion;Left=chr12:4952480-4952907;Right=chr12:4953423-4953789
chr12	CG	SV	4953423	4953789	73	+	.	ID=2164;Type=deletion;Left=chr12:4952480-4952907;Right=chr12:4953423-4953789
chr12	CG	SV	6718000	6719175	17	.	.	ID=2163;Type=deletion;Left=chr12:6718000-6718337+;Right=chr12:6718785-6719175+;Distance=785;DiscordantMatePairAlignments=17;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	6718000	6718337	17	+	.	ID=2163;Type=deletion;Left=chr12:6718000-6718337;Right=chr12:6718785-6719175
chr12	CG	SV	6718785	6719175	17	+	.	ID=2163;Type=deletion;Left=chr12:6718000-6718337;Right=chr12:6718785-6719175
chr12	CG	SV	8908347	8909625	50	.	.	ID=2161;Type=deletion;Left=chr12:8908347-8908966+;Right=chr12:8909373-8909625+;Distance=1026;DiscordantMatePairAlignments=50;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=NM_144670:+;RightGenes=NM_144670:+;XRef=rs71042150 (chr12:8908119-8909146);Frequency=1.00
chr12	CG	SV	8908347	8908966	50	+	.	ID=2161;Type=deletion;Left=chr12:8908347-8908966;Right=chr12:8909373-8909625
chr12	CG	SV	8909373	8909625	50	+	.	ID=2161;Type=deletion;Left=chr12:8908347-8908966;Right=chr12:8909373-8909625
chr12	CG	SV	12435686	12438251	50	.	.	ID=241;Type=distal-duplication;Left=chr12:12435686-12436120-;Right=chr12:12437888-12438251+;Distance=1768;DiscordantMatePairAlignments=50;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_058169:+;RightGenes=NM_058169:+;XRef=;Frequency=1.00
chr12	CG	SV	12435686	12436120	50	-	.	ID=241;Type=distal-duplication;Left=chr12:12435686-12436120;Right=chr12:12437888-12438251
chr12	CG	SV	12437888	12438251	50	-	.	ID=241;Type=distal-duplication;Left=chr12:12435686-12436120;Right=chr12:12437888-12438251
chr12	CG	SV	12436200	12437784	41	.	.	ID=3582;Type=distal-duplication;Left=chr12:12436200-12436539+;Right=chr12:12437443-12437784-;Distance=1584;DiscordantMatePairAlignments=41;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_058169:+;RightGenes=NM_058169:+;XRef=;Frequency=1.00
chr12	CG	SV	12436200	12436539	41	+	.	ID=3582;Type=distal-duplication;Left=chr12:12436200-12436539;Right=chr12:12437443-12437784
chr12	CG	SV	12437443	12437784	41	+	.	ID=3582;Type=distal-duplication;Left=chr12:12436200-12436539;Right=chr12:12437443-12437784
chr12	CG	SV	16311390	16313094	92	.	.	ID=2157;Type=deletion;Left=chr12:16311390-16311916+;Right=chr12:16312550-16313094+;Distance=1160;DiscordantMatePairAlignments=92;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67843530 (chr12:16311390-16312549);Frequency=0.59
chr12	CG	SV	16311390	16311916	92	+	.	ID=2157;Type=deletion;Left=chr12:16311390-16311916;Right=chr12:16312550-16313094
chr12	CG	SV	16312550	16313094	92	+	.	ID=2157;Type=deletion;Left=chr12:16311390-16311916;Right=chr12:16312550-16313094
chr12	CG	SV	17498636	17499504	10	.	.	ID=2155;Type=deletion;Left=chr12:17498636-17499073+;Right=chr12:17499140-17499504+;Distance=504;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr12	CG	SV	17498636	17499073	10	+	.	ID=2155;Type=deletion;Left=chr12:17498636-17499073;Right=chr12:17499140-17499504
chr12	CG	SV	17499140	17499504	10	+	.	ID=2155;Type=deletion;Left=chr12:17498636-17499073;Right=chr12:17499140-17499504
chr12	CG	SV	23830789	23831764	26	.	.	ID=2151;Type=deletion;Left=chr12:23830789-23831221+;Right=chr12:23831356-23831764+;Distance=567;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=;LeftGenes=NM_006940:-;NM_152989:-;RightGenes=NM_006940:-;NM_152989:-;XRef=;Frequency=0.59
chr12	CG	SV	23830789	23831221	26	+	.	ID=2151;Type=deletion;Left=chr12:23830789-23831221;Right=chr12:23831356-23831764
chr12	CG	SV	23831356	23831764	26	+	.	ID=2151;Type=deletion;Left=chr12:23830789-23831221;Right=chr12:23831356-23831764
chr12	CG	SV	24832191	24833410	253	.	.	ID=2150;Type=deletion;Left=chr12:24832191-24832812+;Right=chr12:24832893-24833410+;Distance=702;DiscordantMatePairAlignments=253;LeftRepeat=LTR16A:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr12	CG	SV	24832191	24832812	253	+	.	ID=2150;Type=deletion;Left=chr12:24832191-24832812;Right=chr12:24832893-24833410
chr12	CG	SV	24832893	24833410	253	+	.	ID=2150;Type=deletion;Left=chr12:24832191-24832812;Right=chr12:24832893-24833410
chr12	CG	SV	25846872	124367506	40	.	.	ID=232;Type=complex;Left=chr12:25846872-25847393-;Right=chr12:124367100-124367506+;Distance=98519707;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	25846872	25847393	40	-	.	ID=232;Type=complex;Left=chr12:25846872-25847393;Right=chr12:124367100-124367506
chr12	CG	SV	124367100	124367506	40	-	.	ID=232;Type=complex;Left=chr12:25846872-25847393;Right=chr12:124367100-124367506
chr12	CG	SV	27325270	27325974	10	.	.	ID=2149;Type=deletion;Left=chr12:27325270-27325850+;Right=chr12:27325601-27325974+;Distance=331;DiscordantMatePairAlignments=10;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_015000:+;RightGenes=NM_015000:+;XRef=;Frequency=0.88
chr12	CG	SV	27325270	27325850	10	+	.	ID=2149;Type=deletion;Left=chr12:27325270-27325850;Right=chr12:27325601-27325974
chr12	CG	SV	27325601	27325974	10	+	.	ID=2149;Type=deletion;Left=chr12:27325270-27325850;Right=chr12:27325601-27325974
chr12	CG	SV	29052943	29056501	39	.	.	ID=2148;Type=deletion;Left=chr12:29052943-29053632+;Right=chr12:29056104-29056501+;Distance=3161;DiscordantMatePairAlignments=39;LeftRepeat=MLT1B:LTR:MaLR;RightRepeat=MER93B:LTR:ERV1;Tandem period 31;LeftGenes=;RightGenes=;XRef=rs66659443 (chr12:29052943-29056085);Frequency=0.15
chr12	CG	SV	29052943	29053632	39	+	.	ID=2148;Type=deletion;Left=chr12:29052943-29053632;Right=chr12:29056104-29056501
chr12	CG	SV	29056104	29056501	39	+	.	ID=2148;Type=deletion;Left=chr12:29052943-29053632;Right=chr12:29056104-29056501
chr12	CG	SV	30262584	30263523	16	.	.	ID=2146;Type=deletion;Left=chr12:30262584-30263060+;Right=chr12:30263009-30263523+;Distance=425;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;RightRepeat=Self chain;Tigger3b:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr12	CG	SV	30262584	30263060	16	+	.	ID=2146;Type=deletion;Left=chr12:30262584-30263060;Right=chr12:30263009-30263523
chr12	CG	SV	30263009	30263523	16	+	.	ID=2146;Type=deletion;Left=chr12:30262584-30263060;Right=chr12:30263009-30263523
chr12	CG	SV	30369554	30372755	86	.	.	ID=2145;Type=deletion;Left=chr12:30369554-30370072+;Right=chr12:30372260-30372755+;Distance=2706;DiscordantMatePairAlignments=86;LeftRepeat=LTR41:LTR:ERVL;Self chain;RightRepeat=MER52C:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs66727704 (chr12:30369554-30372260);Frequency=0.41
chr12	CG	SV	30369554	30370072	86	+	.	ID=2145;Type=deletion;Left=chr12:30369554-30370072;Right=chr12:30372260-30372755
chr12	CG	SV	30372260	30372755	86	+	.	ID=2145;Type=deletion;Left=chr12:30369554-30370072;Right=chr12:30372260-30372755
chr12	CG	SV	40524337	40525338	25	.	.	ID=2138;Type=deletion;Left=chr12:40524337-40524998+;Right=chr12:40525161-40525338+;Distance=824;DiscordantMatePairAlignments=25;LeftRepeat=L1HS:LINE:L1;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66498842 (chr12:40524320-40525144);Frequency=0.88
chr12	CG	SV	40524337	40524998	25	+	.	ID=2138;Type=deletion;Left=chr12:40524337-40524998;Right=chr12:40525161-40525338
chr12	CG	SV	40525161	40525338	25	+	.	ID=2138;Type=deletion;Left=chr12:40524337-40524998;Right=chr12:40525161-40525338
chr12	CG	SV	42263726	42266362	207	.	.	ID=2137;Type=deletion;Left=chr12:42263726-42264194+;Right=chr12:42265826-42266362+;Distance=2100;DiscordantMatePairAlignments=207;LeftRepeat=L1P1:LINE:L1;RightRepeat=LTR52:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs67022104 (chr12:42263727-42265827);Frequency=1.00
chr12	CG	SV	42263726	42264194	207	+	.	ID=2137;Type=deletion;Left=chr12:42263726-42264194;Right=chr12:42265826-42266362
chr12	CG	SV	42265826	42266362	207	+	.	ID=2137;Type=deletion;Left=chr12:42263726-42264194;Right=chr12:42265826-42266362
chr12	CG	SV	44189420	44196699	90	.	.	ID=2136;Type=deletion;Left=chr12:44189420-44189918+;Right=chr12:44196206-44196699+;Distance=6786;DiscordantMatePairAlignments=90;LeftRepeat=MSTD-int:LTR:MaLR;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72102706 (chr12:44189420-44196206);Frequency=0.76
chr12	CG	SV	44189420	44189918	90	+	.	ID=2136;Type=deletion;Left=chr12:44189420-44189918;Right=chr12:44196206-44196699
chr12	CG	SV	44196206	44196699	90	+	.	ID=2136;Type=deletion;Left=chr12:44189420-44189918;Right=chr12:44196206-44196699
chr12	CG	SV	58808112	58811678	57	.	.	ID=2132;Type=deletion;Left=chr12:58808112-58808562+;Right=chr12:58811308-58811678+;Distance=3196;DiscordantMatePairAlignments=57;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71042189 (chr12:58808112-58811308);Frequency=0.59
chr12	CG	SV	58808112	58808562	57	+	.	ID=2132;Type=deletion;Left=chr12:58808112-58808562;Right=chr12:58811308-58811678
chr12	CG	SV	58811308	58811678	57	+	.	ID=2132;Type=deletion;Left=chr12:58808112-58808562;Right=chr12:58811308-58811678
chr12	CG	SV	64813918	64816634	49	.	.	ID=2131;Type=deletion;Left=chr12:64813918-64814401+;Right=chr12:64816159-64816634+;Distance=2241;DiscordantMatePairAlignments=49;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67481727 (chr12:64813918-64816159);Frequency=0.41
chr12	CG	SV	64813918	64814401	49	+	.	ID=2131;Type=deletion;Left=chr12:64813918-64814401;Right=chr12:64816159-64816634
chr12	CG	SV	64816159	64816634	49	+	.	ID=2131;Type=deletion;Left=chr12:64813918-64814401;Right=chr12:64816159-64816634
chr12	CG	SV	67833186	117217340	26	.	.	ID=909;Type=tandem-duplication;Left=chr12:67833186-67833639-;Right=chr12:117216957-117217340-;Distance=49383701;DiscordantMatePairAlignments=26;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=NM_016281:-;XRef=;Frequency=0.59
chr12	CG	SV	67833186	67833639	26	-	.	ID=909;Type=tandem-duplication;Left=chr12:67833186-67833639;Right=chr12:117216957-117217340
chr12	CG	SV	117216957	117217340	26	-	.	ID=909;Type=tandem-duplication;Left=chr12:67833186-67833639;Right=chr12:117216957-117217340
chr12	CG	SV	68881131	68884305	55	.	.	ID=2129;Type=deletion;Left=chr12:68881131-68881470+;Right=chr12:68883862-68884305+;Distance=2731;DiscordantMatePairAlignments=55;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67387579 (chr12:68881131-68883862);Frequency=0.88
chr12	CG	SV	68881131	68881470	55	+	.	ID=2129;Type=deletion;Left=chr12:68881131-68881470;Right=chr12:68883862-68884305
chr12	CG	SV	68883862	68884305	55	+	.	ID=2129;Type=deletion;Left=chr12:68881131-68881470;Right=chr12:68883862-68884305
chr12	CG	SV	69818594	69820549	74	.	.	ID=238;Type=distal-duplication;Left=chr12:69818594-69819060-;Right=chr12:69820021-69820549+;Distance=961;DiscordantMatePairAlignments=74;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_004616:-;RightGenes=NM_004616:-;XRef=;Frequency=0.65
chr12	CG	SV	69818594	69819060	74	-	.	ID=238;Type=distal-duplication;Left=chr12:69818594-69819060;Right=chr12:69820021-69820549
chr12	CG	SV	69820021	69820549	74	-	.	ID=238;Type=distal-duplication;Left=chr12:69818594-69819060;Right=chr12:69820021-69820549
chr12	CG	SV	69819545	69820019	81	.	.	ID=3575;Type=distal-duplication;Left=chr12:69819545-69819988+;Right=chr12:69819525-69820019-;Distance=474;DiscordantMatePairAlignments=81;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_004616:-;RightGenes=NM_004616:-;XRef=;Frequency=0.65
chr12	CG	SV	69819545	69819988	81	+	.	ID=3575;Type=distal-duplication;Left=chr12:69819545-69819988;Right=chr12:69819525-69820019
chr12	CG	SV	69819525	69820019	81	+	.	ID=3575;Type=distal-duplication;Left=chr12:69819545-69819988;Right=chr12:69819525-69820019
chr12	CG	SV	70642949	70644843	16	.	.	ID=2128;Type=deletion;Left=chr12:70642949-70643618+;Right=chr12:70644513-70644843+;Distance=1564;DiscordantMatePairAlignments=16;LeftRepeat=AluSg/x:SINE:Alu;Self chain;RightRepeat=Tandem period 9;LeftGenes=NM_173353:+;RightGenes=NM_173353:+;XRef=rs72355357 (chr12:70642775-70644339);Frequency=1.00
chr12	CG	SV	70642949	70643618	16	+	.	ID=2128;Type=deletion;Left=chr12:70642949-70643618;Right=chr12:70644513-70644843
chr12	CG	SV	70644513	70644843	16	+	.	ID=2128;Type=deletion;Left=chr12:70642949-70643618;Right=chr12:70644513-70644843
chr12	CG	SV	78678026	78686731	41	.	.	ID=924;Type=tandem-duplication;Left=chr12:78678026-78678848-;Right=chr12:78686392-78686731-;Distance=7883;DiscordantMatePairAlignments=41;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr12	CG	SV	78678026	78678848	41	-	.	ID=924;Type=tandem-duplication;Left=chr12:78678026-78678848;Right=chr12:78686392-78686731
chr12	CG	SV	78686392	78686731	41	-	.	ID=924;Type=tandem-duplication;Left=chr12:78678026-78678848;Right=chr12:78686392-78686731
chr12	CG	SV	80663849	80668878	48	.	.	ID=2126;Type=deletion;Left=chr12:80663849-80664331+;Right=chr12:80668453-80668878+;Distance=4604;DiscordantMatePairAlignments=48;LeftRepeat=;RightRepeat=;LeftGenes=NM_003625:-;RightGenes=NM_003625:-;XRef=;Frequency=0.12
chr12	CG	SV	80663849	80664331	48	+	.	ID=2126;Type=deletion;Left=chr12:80663849-80664331;Right=chr12:80668453-80668878
chr12	CG	SV	80668453	80668878	48	+	.	ID=2126;Type=deletion;Left=chr12:80663849-80664331;Right=chr12:80668453-80668878
chr12	CG	SV	82368191	82369215	56	.	.	ID=2124;Type=deletion;Left=chr12:82368191-82368778+;Right=chr12:82368755-82369215+;Distance=564;DiscordantMatePairAlignments=56;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66762260 (chr12:82368175-82368739);Frequency=0.82
chr12	CG	SV	82368191	82368778	56	+	.	ID=2124;Type=deletion;Left=chr12:82368191-82368778;Right=chr12:82368755-82369215
chr12	CG	SV	82368755	82369215	56	+	.	ID=2124;Type=deletion;Left=chr12:82368191-82368778;Right=chr12:82368755-82369215
chr12	CG	SV	83117245	83120606	21	.	.	ID=2122;Type=deletion;Left=chr12:83117245-83117610+;Right=chr12:83120148-83120606+;Distance=2903;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72045293 (chr12:83117245-83120148);Frequency=0.71
chr12	CG	SV	83117245	83117610	21	+	.	ID=2122;Type=deletion;Left=chr12:83117245-83117610;Right=chr12:83120148-83120606
chr12	CG	SV	83120148	83120606	21	+	.	ID=2122;Type=deletion;Left=chr12:83117245-83117610;Right=chr12:83120148-83120606
chr12	CG	SV	85728289	85729948	14	.	.	ID=923;Type=distal-duplication;Left=chr12:85728289-85728935-;Right=chr12:85729821-85729948-;Distance=1013;DiscordantMatePairAlignments=14;LeftRepeat=L1MDb:LINE:L1;RightRepeat=L1MDb:LINE:L1;LeftGenes=NM_013244:-;RightGenes=NM_013244:-;XRef=;Frequency=0.88
chr12	CG	SV	85728289	85728935	14	-	.	ID=923;Type=distal-duplication;Left=chr12:85728289-85728935;Right=chr12:85729821-85729948
chr12	CG	SV	85729821	85729948	14	-	.	ID=923;Type=distal-duplication;Left=chr12:85728289-85728935;Right=chr12:85729821-85729948
chr12	CG	SV	85728936	85729944	13	.	.	ID=2121;Type=distal-duplication;Left=chr12:85728936-85729412+;Right=chr12:85729839-85729944+;Distance=903;DiscordantMatePairAlignments=13;LeftRepeat=L1MDb:LINE:L1;RightRepeat=L1MDb:LINE:L1;LeftGenes=NM_013244:-;RightGenes=NM_013244:-;XRef=;Frequency=0.88
chr12	CG	SV	85728936	85729412	13	+	.	ID=2121;Type=distal-duplication;Left=chr12:85728936-85729412;Right=chr12:85729839-85729944
chr12	CG	SV	85729839	85729944	13	+	.	ID=2121;Type=distal-duplication;Left=chr12:85728936-85729412;Right=chr12:85729839-85729944
chr12	CG	SV	92028424	92030031	68	.	.	ID=2120;Type=deletion;Left=chr12:92028424-92028985+;Right=chr12:92029518-92030031+;Distance=1094;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72391384 (chr12:92028431-92029518);Frequency=0.06
chr12	CG	SV	92028424	92028985	68	+	.	ID=2120;Type=deletion;Left=chr12:92028424-92028985;Right=chr12:92029518-92030031
chr12	CG	SV	92029518	92030031	68	+	.	ID=2120;Type=deletion;Left=chr12:92028424-92028985;Right=chr12:92029518-92030031
chr12	CG	SV	92368317	92370673	66	.	.	ID=922;Type=tandem-duplication;Left=chr12:92368317-92368863-;Right=chr12:92370126-92370673-;Distance=1810;DiscordantMatePairAlignments=66;LeftRepeat=AluJ/FLAM:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr12	CG	SV	92368317	92368863	66	-	.	ID=922;Type=tandem-duplication;Left=chr12:92368317-92368863;Right=chr12:92370126-92370673
chr12	CG	SV	92370126	92370673	66	-	.	ID=922;Type=tandem-duplication;Left=chr12:92368317-92368863;Right=chr12:92370126-92370673
chr12	CG	SV	93768157	93768895	13	.	.	ID=2119;Type=deletion;Left=chr12:93768157-93768836+;Right=chr12:93768580-93768895+;Distance=423;DiscordantMatePairAlignments=13;LeftRepeat=L1MA4A:LINE:L1;RightRepeat=MSTB1:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr12	CG	SV	93768157	93768836	13	+	.	ID=2119;Type=deletion;Left=chr12:93768157-93768836;Right=chr12:93768580-93768895
chr12	CG	SV	93768580	93768895	13	+	.	ID=2119;Type=deletion;Left=chr12:93768157-93768836;Right=chr12:93768580-93768895
chr12	CG	SV	94757723	94760982	33	.	.	ID=2118;Type=deletion;Left=chr12:94757723-94758235+;Right=chr12:94760469-94760982+;Distance=2746;DiscordantMatePairAlignments=33;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66521162 (chr12:94757723-94760469);Frequency=0.94
chr12	CG	SV	94757723	94758235	33	+	.	ID=2118;Type=deletion;Left=chr12:94757723-94758235;Right=chr12:94760469-94760982
chr12	CG	SV	94760469	94760982	33	+	.	ID=2118;Type=deletion;Left=chr12:94757723-94758235;Right=chr12:94760469-94760982
chr12	CG	SV	100626541	100631557	29	.	.	ID=2115;Type=deletion;Left=chr12:100626541-100626903+;Right=chr12:100631221-100631557+;Distance=4680;DiscordantMatePairAlignments=29;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L1MEc:LINE:L1;LeftGenes=NM_020244:+;RightGenes=NM_020244:+;XRef=;Frequency=0.53
chr12	CG	SV	100626541	100626903	29	+	.	ID=2115;Type=deletion;Left=chr12:100626541-100626903;Right=chr12:100631221-100631557
chr12	CG	SV	100631221	100631557	29	+	.	ID=2115;Type=deletion;Left=chr12:100626541-100626903;Right=chr12:100631221-100631557
chr12	CG	SV	102883561	124367784	54	.	.	ID=229;Type=complex;Left=chr12:102883561-102883759-;Right=chr12:124367100-124367784+;Distance=21483341;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_003211:+;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	102883561	102883759	54	-	.	ID=229;Type=complex;Left=chr12:102883561-102883759;Right=chr12:124367100-124367784
chr12	CG	SV	124367100	124367784	54	-	.	ID=229;Type=complex;Left=chr12:102883561-102883759;Right=chr12:124367100-124367784
chr12	CG	SV	109100513	109102337	14	.	.	ID=237;Type=probable-inversion;Left=chr12:109100513-109100971-;Right=chr12:109102205-109102337+;Distance=1234;DiscordantMatePairAlignments=14;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_001143779:+;NM_014055:+;RightGenes=NM_001143779:+;NM_014055:+;XRef=;Frequency=1.00
chr12	CG	SV	109100513	109100971	14	-	.	ID=237;Type=probable-inversion;Left=chr12:109100513-109100971;Right=chr12:109102205-109102337
chr12	CG	SV	109102205	109102337	14	-	.	ID=237;Type=probable-inversion;Left=chr12:109100513-109100971;Right=chr12:109102205-109102337
chr12	CG	SV	114561908	114564816	10	.	.	ID=2100;Type=deletion;Left=chr12:114561908-114561989+;Right=chr12:114564288-114564816+;Distance=2380;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67352178 (chr12:114561908-114564286);Frequency=0.53
chr12	CG	SV	114561908	114561989	10	+	.	ID=2100;Type=deletion;Left=chr12:114561908-114561989;Right=chr12:114564288-114564816
chr12	CG	SV	114564288	114564816	10	+	.	ID=2100;Type=deletion;Left=chr12:114561908-114561989;Right=chr12:114564288-114564816
chr12	CG	SV	125349458	125356138	98	.	.	ID=2095;Type=deletion;Left=chr12:125349458-125350085+;Right=chr12:125355552-125356138+;Distance=6094;DiscordantMatePairAlignments=98;LeftRepeat=MSTB1:LTR:MaLR;Self chain;RightRepeat=MSTB1:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr12	CG	SV	125349458	125350085	98	+	.	ID=2095;Type=deletion;Left=chr12:125349458-125350085;Right=chr12:125355552-125356138
chr12	CG	SV	125355552	125356138	98	+	.	ID=2095;Type=deletion;Left=chr12:125349458-125350085;Right=chr12:125355552-125356138
chr12	CG	SV	126957019	126957891	19	.	.	ID=3569;Type=probable-inversion;Left=chr12:126957019-126957518+;Right=chr12:126957780-126957891-;Distance=872;DiscordantMatePairAlignments=19;LeftRepeat=(TA)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=L1ME1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	126957019	126957518	19	+	.	ID=3569;Type=probable-inversion;Left=chr12:126957019-126957518;Right=chr12:126957780-126957891
chr12	CG	SV	126957780	126957891	19	+	.	ID=3569;Type=probable-inversion;Left=chr12:126957019-126957518;Right=chr12:126957780-126957891
chr12	CG	SV	129932861	129933862	35	.	.	ID=2094;Type=deletion;Left=chr12:129932861-129933479+;Right=chr12:129933405-129933862+;Distance=544;DiscordantMatePairAlignments=35;LeftRepeat=Self chain;Tandem period 134;Tandem period 68;RightRepeat=Self chain;Tandem period 134;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr12	CG	SV	129932861	129933479	35	+	.	ID=2094;Type=deletion;Left=chr12:129932861-129933479;Right=chr12:129933405-129933862
chr12	CG	SV	129933405	129933862	35	+	.	ID=2094;Type=deletion;Left=chr12:129932861-129933479;Right=chr12:129933405-129933862
chr12	CG	SV	131452393	131453261	19	.	.	ID=2093;Type=deletion;Left=chr12:131452393-131452904+;Right=chr12:131452806-131453261+;Distance=413;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;Tandem period 118;Tandem period 59;RightRepeat=Self chain;Tandem period 118;Tandem period 59;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr12	CG	SV	131452393	131452904	19	+	.	ID=2093;Type=deletion;Left=chr12:131452393-131452904;Right=chr12:131452806-131453261
chr12	CG	SV	131452806	131453261	19	+	.	ID=2093;Type=deletion;Left=chr12:131452393-131452904;Right=chr12:131452806-131453261
chr13	CG	SV	26444546	26445667	10	.	.	ID=906;Type=tandem-duplication;Left=chr13:26444546-26444935-;Right=chr13:26445535-26445667-;Distance=732;DiscordantMatePairAlignments=10;LeftRepeat=(CA)n:Simple_repeat:Simple_repeat;Tandem CA;Tandem period 9;RightRepeat=(CA)n:Simple_repeat:Simple_repeat;Tandem AC;Tandem ACACAC;Tandem period 13;Tandem period 9;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr13	CG	SV	26444546	26444935	10	-	.	ID=906;Type=tandem-duplication;Left=chr13:26444546-26444935;Right=chr13:26445535-26445667
chr13	CG	SV	26445535	26445667	10	-	.	ID=906;Type=tandem-duplication;Left=chr13:26444546-26444935;Right=chr13:26445535-26445667
chr13	CG	SV	27166143	27167401	10	.	.	ID=2089;Type=deletion;Left=chr13:27166143-27166480+;Right=chr13:27167052-27167401+;Distance=909;DiscordantMatePairAlignments=10;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1PA16:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr13	CG	SV	27166143	27166480	10	+	.	ID=2089;Type=deletion;Left=chr13:27166143-27166480;Right=chr13:27167052-27167401
chr13	CG	SV	27167052	27167401	10	+	.	ID=2089;Type=deletion;Left=chr13:27166143-27166480;Right=chr13:27167052-27167401
chr13	CG	SV	30094958	30096299	46	.	.	ID=2087;Type=deletion;Left=chr13:30094958-30095272+;Right=chr13:30095770-30096299+;Distance=812;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=MER21B:LTR:ERV1;LeftGenes=NM_005800:+;RightGenes=NM_005800:+;XRef=;Frequency=0.00
chr13	CG	SV	30094958	30095272	46	+	.	ID=2087;Type=deletion;Left=chr13:30094958-30095272;Right=chr13:30095770-30096299
chr13	CG	SV	30095770	30096299	46	+	.	ID=2087;Type=deletion;Left=chr13:30094958-30095272;Right=chr13:30095770-30096299
chr13	CG	SV	41844885	41845652	54	.	.	ID=904;Type=tandem-duplication;Left=chr13:41844885-41845268-;Right=chr13:41845288-41845652-;Distance=384;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr13	CG	SV	41844885	41845268	54	-	.	ID=904;Type=tandem-duplication;Left=chr13:41844885-41845268;Right=chr13:41845288-41845652
chr13	CG	SV	41845288	41845652	54	-	.	ID=904;Type=tandem-duplication;Left=chr13:41844885-41845268;Right=chr13:41845288-41845652
chr13	CG	SV	41951318	41952383	61	.	.	ID=2083;Type=deletion;Left=chr13:41951318-41951861+;Right=chr13:41951962-41952383+;Distance=644;DiscordantMatePairAlignments=61;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72375475 (chr13:41951191-41951835);Frequency=0.29
chr13	CG	SV	41951318	41951861	61	+	.	ID=2083;Type=deletion;Left=chr13:41951318-41951861;Right=chr13:41951962-41952383
chr13	CG	SV	41951962	41952383	61	+	.	ID=2083;Type=deletion;Left=chr13:41951318-41951861;Right=chr13:41951962-41952383
chr13	CG	SV	42437798	42440115	130	.	.	ID=2082;Type=deletion;Left=chr13:42437798-42438277+;Right=chr13:42439451-42440115+;Distance=1653;DiscordantMatePairAlignments=130;LeftRepeat=;RightRepeat=;LeftGenes=NM_001002264:-;NM_033255:-;RightGenes=NM_001002264:-;NM_033255:-;XRef=rs67713275 (chr13:42437794-42439447);Frequency=0.82
chr13	CG	SV	42437798	42438277	130	+	.	ID=2082;Type=deletion;Left=chr13:42437798-42438277;Right=chr13:42439451-42440115
chr13	CG	SV	42439451	42440115	130	+	.	ID=2082;Type=deletion;Left=chr13:42437798-42438277;Right=chr13:42439451-42440115
chr13	CG	SV	49967351	49973624	105	.	.	ID=2077;Type=deletion;Left=chr13:49967351-49967878+;Right=chr13:49973083-49973624+;Distance=5732;DiscordantMatePairAlignments=105;LeftRepeat=Self chain;RightRepeat=MSTB-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67883993 (chr13:49967351-49973083);Frequency=0.94
chr13	CG	SV	49967351	49967878	105	+	.	ID=2077;Type=deletion;Left=chr13:49967351-49967878;Right=chr13:49973083-49973624
chr13	CG	SV	49973083	49973624	105	+	.	ID=2077;Type=deletion;Left=chr13:49967351-49967878;Right=chr13:49973083-49973624
chr13	CG	SV	62024188	68619584	22	.	.	ID=226;Type=probable-inversion;Left=chr13:62024188-62024590-;Right=chr13:68619141-68619584+;Distance=6594551;DiscordantMatePairAlignments=22;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	62024188	62024590	22	-	.	ID=226;Type=probable-inversion;Left=chr13:62024188-62024590;Right=chr13:68619141-68619584
chr13	CG	SV	68619141	68619584	22	-	.	ID=226;Type=probable-inversion;Left=chr13:62024188-62024590;Right=chr13:68619141-68619584
chr13	CG	SV	62503487	62504127	16	.	.	ID=227;Type=probable-inversion;Left=chr13:62503487-62503564-;Right=chr13:62503672-62504127+;Distance=108;DiscordantMatePairAlignments=16;LeftRepeat=L2:LINE:L2;SegDup;RightRepeat=L2:LINE:L2;SegDup;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	62503487	62503564	16	-	.	ID=227;Type=probable-inversion;Left=chr13:62503487-62503564;Right=chr13:62503672-62504127
chr13	CG	SV	62503672	62504127	16	-	.	ID=227;Type=probable-inversion;Left=chr13:62503487-62503564;Right=chr13:62503672-62504127
chr13	CG	SV	66072781	66075811	58	.	.	ID=2071;Type=deletion;Left=chr13:66072781-66073347+;Right=chr13:66075423-66075811+;Distance=2642;DiscordantMatePairAlignments=58;LeftRepeat=;RightRepeat=;LeftGenes=NM_020403:-;NM_203487:-;RightGenes=NM_020403:-;NM_203487:-;XRef=;Frequency=0.53
chr13	CG	SV	66072781	66073347	58	+	.	ID=2071;Type=deletion;Left=chr13:66072781-66073347;Right=chr13:66075423-66075811
chr13	CG	SV	66075423	66075811	58	+	.	ID=2071;Type=deletion;Left=chr13:66072781-66073347;Right=chr13:66075423-66075811
chr13	CG	SV	77662970	77666452	217	.	.	ID=2068;Type=deletion;Left=chr13:77662970-77663511+;Right=chr13:77665838-77666452+;Distance=2868;DiscordantMatePairAlignments=217;LeftRepeat=MER21B:LTR:ERV1;RightRepeat=L1MEc:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr13	CG	SV	77662970	77663511	217	+	.	ID=2068;Type=deletion;Left=chr13:77662970-77663511;Right=chr13:77665838-77666452
chr13	CG	SV	77665838	77666452	217	+	.	ID=2068;Type=deletion;Left=chr13:77662970-77663511;Right=chr13:77665838-77666452
chr13	CG	SV	77895793	77897262	18	.	.	ID=2067;Type=deletion;Left=chr13:77895793-77896393+;Right=chr13:77896892-77897262+;Distance=1099;DiscordantMatePairAlignments=18;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71729399 (chr13:77895641-77896751);Frequency=0.53
chr13	CG	SV	77895793	77896393	18	+	.	ID=2067;Type=deletion;Left=chr13:77895793-77896393;Right=chr13:77896892-77897262
chr13	CG	SV	77896892	77897262	18	+	.	ID=2067;Type=deletion;Left=chr13:77895793-77896393;Right=chr13:77896892-77897262
chr13	CG	SV	81254789	81255502	25	.	.	ID=225;Type=probable-inversion;Left=chr13:81254789-81254877-;Right=chr13:81254977-81255502+;Distance=100;DiscordantMatePairAlignments=25;LeftRepeat=HERVL40:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	81254789	81254877	25	-	.	ID=225;Type=probable-inversion;Left=chr13:81254789-81254877;Right=chr13:81254977-81255502
chr13	CG	SV	81254977	81255502	25	-	.	ID=225;Type=probable-inversion;Left=chr13:81254789-81254877;Right=chr13:81254977-81255502
chr13	CG	SV	89160806	89182894	17	.	.	ID=3564;Type=probable-inversion;Left=chr13:89160806-89161288+;Right=chr13:89182455-89182894-;Distance=22088;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	89160806	89161288	17	+	.	ID=3564;Type=probable-inversion;Left=chr13:89160806-89161288;Right=chr13:89182455-89182894
chr13	CG	SV	89182455	89182894	17	+	.	ID=3564;Type=probable-inversion;Left=chr13:89160806-89161288;Right=chr13:89182455-89182894
chr13	CG	SV	89660856	89663334	20	.	.	ID=2062;Type=deletion;Left=chr13:89660856-89661286+;Right=chr13:89662811-89663334+;Distance=1955;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr13	CG	SV	89660856	89661286	20	+	.	ID=2062;Type=deletion;Left=chr13:89660856-89661286;Right=chr13:89662811-89663334
chr13	CG	SV	89662811	89663334	20	+	.	ID=2062;Type=deletion;Left=chr13:89660856-89661286;Right=chr13:89662811-89663334
chr13	CG	SV	92042636	92044388	30	.	.	ID=2061;Type=deletion;Left=chr13:92042636-92043106+;Right=chr13:92044030-92044388+;Distance=1394;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_004466:+;RightGenes=NM_004466:+;XRef=;Frequency=0.00
chr13	CG	SV	92042636	92043106	30	+	.	ID=2061;Type=deletion;Left=chr13:92042636-92043106;Right=chr13:92044030-92044388
chr13	CG	SV	92044030	92044388	30	+	.	ID=2061;Type=deletion;Left=chr13:92042636-92043106;Right=chr13:92044030-92044388
chr13	CG	SV	96739659	96742615	13	.	.	ID=2059;Type=deletion;Left=chr13:96739659-96739848+;Right=chr13:96742171-96742615+;Distance=2512;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=;LeftGenes=NM_144778:+;NM_207304:+;RightGenes=NM_144778:+;NM_207304:+;XRef=;Frequency=0.00
chr13	CG	SV	96739659	96739848	13	+	.	ID=2059;Type=deletion;Left=chr13:96739659-96739848;Right=chr13:96742171-96742615
chr13	CG	SV	96742171	96742615	13	+	.	ID=2059;Type=deletion;Left=chr13:96739659-96739848;Right=chr13:96742171-96742615
chr13	CG	SV	99323149	111745204	28	.	.	ID=223;Type=probable-inversion;Left=chr13:99323149-99323725-;Right=chr13:111744707-111745204+;Distance=12420982;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=;LeftGenes=NM_206808:+;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	99323149	99323725	28	-	.	ID=223;Type=probable-inversion;Left=chr13:99323149-99323725;Right=chr13:111744707-111745204
chr13	CG	SV	111744707	111745204	28	-	.	ID=223;Type=probable-inversion;Left=chr13:99323149-99323725;Right=chr13:111744707-111745204
chr13	CG	SV	100692147	100694930	27	.	.	ID=2057;Type=deletion;Left=chr13:100692147-100692598+;Right=chr13:100694428-100694930+;Distance=2281;DiscordantMatePairAlignments=27;LeftRepeat=L1MEd:LINE:L1;RightRepeat=;LeftGenes=NM_052867:-;RightGenes=NM_052867:-;XRef=rs71085658 (chr13:100692147-100694428);Frequency=0.82
chr13	CG	SV	100692147	100692598	27	+	.	ID=2057;Type=deletion;Left=chr13:100692147-100692598;Right=chr13:100694428-100694930
chr13	CG	SV	100694428	100694930	27	+	.	ID=2057;Type=deletion;Left=chr13:100692147-100692598;Right=chr13:100694428-100694930
chr13	CG	SV	102807864	102808716	12	.	.	ID=2056;Type=deletion;Left=chr13:102807864-102808526+;Right=chr13:102808183-102808716+;Distance=319;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr13	CG	SV	102807864	102808526	12	+	.	ID=2056;Type=deletion;Left=chr13:102807864-102808526;Right=chr13:102808183-102808716
chr13	CG	SV	102808183	102808716	12	+	.	ID=2056;Type=deletion;Left=chr13:102807864-102808526;Right=chr13:102808183-102808716
chr13	CG	SV	102889766	102890693	17	.	.	ID=2055;Type=deletion;Left=chr13:102889766-102890289+;Right=chr13:102890248-102890693+;Distance=482;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66819995 (chr13:102889765-102890247);Frequency=1.00
chr13	CG	SV	102889766	102890289	17	+	.	ID=2055;Type=deletion;Left=chr13:102889766-102890289;Right=chr13:102890248-102890693
chr13	CG	SV	102890248	102890693	17	+	.	ID=2055;Type=deletion;Left=chr13:102889766-102890289;Right=chr13:102890248-102890693
chr13	CG	SV	103570461	104881237	26	.	.	ID=2054;Type=deletion;Left=chr13:103570461-103570919+;Right=chr13:104880997-104881237+;Distance=1310536;DiscordantMatePairAlignments=26;LeftRepeat=L1MCc:LINE:L1;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	103570461	103570919	26	+	.	ID=2054;Type=deletion;Left=chr13:103570461-103570919;Right=chr13:104880997-104881237
chr13	CG	SV	104880997	104881237	26	+	.	ID=2054;Type=deletion;Left=chr13:103570461-103570919;Right=chr13:104880997-104881237
chr13	CG	SV	107745025	107750279	73	.	.	ID=2053;Type=deletion;Left=chr13:107745025-107745296+;Right=chr13:107749811-107750279+;Distance=4786;DiscordantMatePairAlignments=73;LeftRepeat=L1MB5:LINE:L1;RightRepeat=L1MB5:LINE:L1;LeftGenes=NM_001145645:+;NM_006573:+;RightGenes=NM_001145645:+;NM_006573:+;XRef=;Frequency=0.24
chr13	CG	SV	107745025	107745296	73	+	.	ID=2053;Type=deletion;Left=chr13:107745025-107745296;Right=chr13:107749811-107750279
chr13	CG	SV	107749811	107750279	73	+	.	ID=2053;Type=deletion;Left=chr13:107745025-107745296;Right=chr13:107749811-107750279
chr13	CG	SV	108159749	108160939	115	.	.	ID=2052;Type=deletion;Left=chr13:108159749-108160448+;Right=chr13:108160441-108160939+;Distance=692;DiscordantMatePairAlignments=115;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_015011:+;RightGenes=NM_015011:+;XRef=;Frequency=0.53
chr13	CG	SV	108159749	108160448	115	+	.	ID=2052;Type=deletion;Left=chr13:108159749-108160448;Right=chr13:108160441-108160939
chr13	CG	SV	108160441	108160939	115	+	.	ID=2052;Type=deletion;Left=chr13:108159749-108160448;Right=chr13:108160441-108160939
chr13	CG	SV	110502473	110503354	31	.	.	ID=2049;Type=deletion;Left=chr13:110502473-110502985+;Right=chr13:110502983-110503354+;Distance=510;DiscordantMatePairAlignments=31;LeftRepeat=Self chain;Tandem period 134;Tandem period 27;RightRepeat=MER39:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs71085666 (chr13:110502520-110502896);Frequency=0.94
chr13	CG	SV	110502473	110502985	31	+	.	ID=2049;Type=deletion;Left=chr13:110502473-110502985;Right=chr13:110502983-110503354
chr13	CG	SV	110502983	110503354	31	+	.	ID=2049;Type=deletion;Left=chr13:110502473-110502985;Right=chr13:110502983-110503354
chr13	CG	SV	112469197	112470191	10	.	.	ID=2048;Type=deletion;Left=chr13:112469197-112469521+;Right=chr13:112469872-112470191+;Distance=675;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 159;Tandem period 40;Tandem period 79;RightRepeat=Self chain;LeftGenes=NM_015205:+;NM_032189:+;RightGenes=NM_015205:+;NM_032189:+;XRef=;Frequency=0.12
chr13	CG	SV	112469197	112469521	10	+	.	ID=2048;Type=deletion;Left=chr13:112469197-112469521;Right=chr13:112469872-112470191
chr13	CG	SV	112469872	112470191	10	+	.	ID=2048;Type=deletion;Left=chr13:112469197-112469521;Right=chr13:112469872-112470191
chr13	CG	SV	114008694	114010622	51	.	.	ID=2047;Type=deletion;Left=chr13:114008694-114009256+;Right=chr13:114009982-114010622+;Distance=1288;DiscordantMatePairAlignments=51;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr13	CG	SV	114008694	114009256	51	+	.	ID=2047;Type=deletion;Left=chr13:114008694-114009256;Right=chr13:114009982-114010622
chr13	CG	SV	114009982	114010622	51	+	.	ID=2047;Type=deletion;Left=chr13:114008694-114009256;Right=chr13:114009982-114010622
chr14	CG	SV	21100019	21101880	40	.	.	ID=2045;Type=deletion;Left=chr14:21100019-21100577+;Right=chr14:21101665-21101880+;Distance=1646;DiscordantMatePairAlignments=40;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr14	CG	SV	21100019	21100577	40	+	.	ID=2045;Type=deletion;Left=chr14:21100019-21100577;Right=chr14:21101665-21101880
chr14	CG	SV	21101665	21101880	40	+	.	ID=2045;Type=deletion;Left=chr14:21100019-21100577;Right=chr14:21101665-21101880
chr14	CG	SV	21951507	21952734	124	.	.	ID=2044;Type=deletion;Left=chr14:21951507-21952134+;Right=chr14:21952100-21952734+;Distance=593;DiscordantMatePairAlignments=124;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66716556 (chr14:21951506-21952099);Frequency=0.94
chr14	CG	SV	21951507	21952134	124	+	.	ID=2044;Type=deletion;Left=chr14:21951507-21952134;Right=chr14:21952100-21952734
chr14	CG	SV	21952100	21952734	124	+	.	ID=2044;Type=deletion;Left=chr14:21951507-21952134;Right=chr14:21952100-21952734
chr14	CG	SV	22122064	22123995	86	.	.	ID=2043;Type=deletion;Left=chr14:22122064-22122353+;Right=chr14:22123393-22123995+;Distance=1329;DiscordantMatePairAlignments=86;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_001344:-;RightGenes=NM_001344:-;XRef=;Frequency=0.00
chr14	CG	SV	22122064	22122353	86	+	.	ID=2043;Type=deletion;Left=chr14:22122064-22122353;Right=chr14:22123393-22123995
chr14	CG	SV	22123393	22123995	86	+	.	ID=2043;Type=deletion;Left=chr14:22122064-22122353;Right=chr14:22123393-22123995
chr14	CG	SV	25353716	25354972	22	.	.	ID=2040;Type=deletion;Left=chr14:25353716-25354258+;Right=chr14:25354642-25354972+;Distance=926;DiscordantMatePairAlignments=22;LeftRepeat=L1PA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr14	CG	SV	25353716	25354258	22	+	.	ID=2040;Type=deletion;Left=chr14:25353716-25354258;Right=chr14:25354642-25354972
chr14	CG	SV	25354642	25354972	22	+	.	ID=2040;Type=deletion;Left=chr14:25353716-25354258;Right=chr14:25354642-25354972
chr14	CG	SV	28797800	28799161	106	.	.	ID=2039;Type=deletion;Left=chr14:28797800-28798326+;Right=chr14:28798564-28799161+;Distance=764;DiscordantMatePairAlignments=106;LeftRepeat=;RightRepeat=L1MC3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr14	CG	SV	28797800	28798326	106	+	.	ID=2039;Type=deletion;Left=chr14:28797800-28798326;Right=chr14:28798564-28799161
chr14	CG	SV	28798564	28799161	106	+	.	ID=2039;Type=deletion;Left=chr14:28797800-28798326;Right=chr14:28798564-28799161
chr14	CG	SV	39168148	39170353	75	.	.	ID=2034;Type=deletion;Left=chr14:39168148-39168640+;Right=chr14:39169970-39170353+;Distance=1822;DiscordantMatePairAlignments=75;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66498065 (chr14:39168160-39169982);Frequency=0.59
chr14	CG	SV	39168148	39168640	75	+	.	ID=2034;Type=deletion;Left=chr14:39168148-39168640;Right=chr14:39169970-39170353
chr14	CG	SV	39169970	39170353	75	+	.	ID=2034;Type=deletion;Left=chr14:39168148-39168640;Right=chr14:39169970-39170353
chr14	CG	SV	42442661	42443564	22	.	.	ID=2032;Type=deletion;Left=chr14:42442661-42443272+;Right=chr14:42443073-42443564+;Distance=412;DiscordantMatePairAlignments=22;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=L1MCa:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr14	CG	SV	42442661	42443272	22	+	.	ID=2032;Type=deletion;Left=chr14:42442661-42443272;Right=chr14:42443073-42443564
chr14	CG	SV	42443073	42443564	22	+	.	ID=2032;Type=deletion;Left=chr14:42442661-42443272;Right=chr14:42443073-42443564
chr14	CG	SV	49261459	49262106	46	.	.	ID=893;Type=tandem-duplication;Left=chr14:49261459-49261790-;Right=chr14:49261782-49262106-;Distance=316;DiscordantMatePairAlignments=46;LeftRepeat=L3:LINE:CR1;RightRepeat=;LeftGenes=NM_172193:+;RightGenes=NM_172193:+;XRef=;Frequency=1.00
chr14	CG	SV	49261459	49261790	46	-	.	ID=893;Type=tandem-duplication;Left=chr14:49261459-49261790;Right=chr14:49261782-49262106
chr14	CG	SV	49261782	49262106	46	-	.	ID=893;Type=tandem-duplication;Left=chr14:49261459-49261790;Right=chr14:49261782-49262106
chr14	CG	SV	51448094	51449088	114	.	.	ID=2030;Type=deletion;Left=chr14:51448094-51448658+;Right=chr14:51448653-51449088+;Distance=559;DiscordantMatePairAlignments=114;LeftRepeat=AluJo:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_053064:+;RightGenes=NM_053064:+;XRef=rs72381763 (chr14:51448094-51448653);Frequency=0.12
chr14	CG	SV	51448094	51448658	114	+	.	ID=2030;Type=deletion;Left=chr14:51448094-51448658;Right=chr14:51448653-51449088
chr14	CG	SV	51448653	51449088	114	+	.	ID=2030;Type=deletion;Left=chr14:51448094-51448658;Right=chr14:51448653-51449088
chr14	CG	SV	59411151	59413438	17	.	.	ID=2028;Type=deletion;Left=chr14:59411151-59411649+;Right=chr14:59412995-59413438+;Distance=1844;DiscordantMatePairAlignments=17;LeftRepeat=L1MA3:LINE:L1;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr14	CG	SV	59411151	59411649	17	+	.	ID=2028;Type=deletion;Left=chr14:59411151-59411649;Right=chr14:59412995-59413438
chr14	CG	SV	59412995	59413438	17	+	.	ID=2028;Type=deletion;Left=chr14:59411151-59411649;Right=chr14:59412995-59413438
chr14	CG	SV	64358647	64359339	15	.	.	ID=221;Type=probable-inversion;Left=chr14:64358647-64358740-;Right=chr14:64358847-64359339+;Distance=107;DiscordantMatePairAlignments=15;LeftRepeat=;RightRepeat=(CA)n:Simple_repeat:Simple_repeat;Tandem CA;LeftGenes=NM_000347:-;NM_001024858:-;RightGenes=NM_000347:-;NM_001024858:-;XRef=;Frequency=1.00
chr14	CG	SV	64358647	64358740	15	-	.	ID=221;Type=probable-inversion;Left=chr14:64358647-64358740;Right=chr14:64358847-64359339
chr14	CG	SV	64358847	64359339	15	-	.	ID=221;Type=probable-inversion;Left=chr14:64358647-64358740;Right=chr14:64358847-64359339
chr14	CG	SV	64430149	64433764	164	.	.	ID=2026;Type=deletion;Left=chr14:64430149-64430693+;Right=chr14:64433303-64433764+;Distance=3154;DiscordantMatePairAlignments=164;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71948642 (chr14:64430149-64433302);Frequency=1.00
chr14	CG	SV	64430149	64430693	164	+	.	ID=2026;Type=deletion;Left=chr14:64430149-64430693;Right=chr14:64433303-64433764
chr14	CG	SV	64433303	64433764	164	+	.	ID=2026;Type=deletion;Left=chr14:64430149-64430693;Right=chr14:64433303-64433764
chr14	CG	SV	65327972	65328163	10	.	.	ID=892;Type=tandem-duplication;Left=chr14:65327972-65328052-;Right=chr14:65328041-65328163-;Distance=111;DiscordantMatePairAlignments=10;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr14	CG	SV	65327972	65328052	10	-	.	ID=892;Type=tandem-duplication;Left=chr14:65327972-65328052;Right=chr14:65328041-65328163
chr14	CG	SV	65328041	65328163	10	-	.	ID=892;Type=tandem-duplication;Left=chr14:65327972-65328052;Right=chr14:65328041-65328163
chr14	CG	SV	67672900	67674133	79	.	.	ID=2024;Type=deletion;Left=chr14:67672900-67673425+;Right=chr14:67673598-67674133+;Distance=698;DiscordantMatePairAlignments=79;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_002877:+;NM_133509:+;NM_133510:+;RightGenes=NM_002877:+;NM_133509:+;NM_133510:+;XRef=rs67710758 (chr14:67672811-67673511);Frequency=0.94
chr14	CG	SV	67672900	67673425	79	+	.	ID=2024;Type=deletion;Left=chr14:67672900-67673425;Right=chr14:67673598-67674133
chr14	CG	SV	67673598	67674133	79	+	.	ID=2024;Type=deletion;Left=chr14:67672900-67673425;Right=chr14:67673598-67674133
chr14	CG	SV	69757592	69759598	39	.	.	ID=2023;Type=deletion;Left=chr14:69757592-69758138+;Right=chr14:69759213-69759598+;Distance=1621;DiscordantMatePairAlignments=39;LeftRepeat=L1M:LINE:L1;Self chain;RightRepeat=MER53:DNA:DNA;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr14	CG	SV	69757592	69758138	39	+	.	ID=2023;Type=deletion;Left=chr14:69757592-69758138;Right=chr14:69759213-69759598
chr14	CG	SV	69759213	69759598	39	+	.	ID=2023;Type=deletion;Left=chr14:69757592-69758138;Right=chr14:69759213-69759598
chr14	CG	SV	75883527	75884513	60	.	.	ID=2022;Type=deletion;Left=chr14:75883527-75884205+;Right=chr14:75883962-75884513+;Distance=435;DiscordantMatePairAlignments=60;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72100137 (chr14:75883527-75883962);Frequency=0.59
chr14	CG	SV	75883527	75884205	60	+	.	ID=2022;Type=deletion;Left=chr14:75883527-75884205;Right=chr14:75883962-75884513
chr14	CG	SV	75883962	75884513	60	+	.	ID=2022;Type=deletion;Left=chr14:75883527-75884205;Right=chr14:75883962-75884513
chr14	CG	SV	77897998	77898827	10	.	.	ID=2021;Type=deletion;Left=chr14:77897998-77898649+;Right=chr14:77898349-77898827+;Distance=351;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71105289 (chr14:77897998-77898349);Frequency=1.00
chr14	CG	SV	77897998	77898649	10	+	.	ID=2021;Type=deletion;Left=chr14:77897998-77898649;Right=chr14:77898349-77898827
chr14	CG	SV	77898349	77898827	10	+	.	ID=2021;Type=deletion;Left=chr14:77897998-77898649;Right=chr14:77898349-77898827
chr14	CG	SV	82705594	82706643	60	.	.	ID=2019;Type=deletion;Left=chr14:82705594-82706193+;Right=chr14:82706241-82706643+;Distance=647;DiscordantMatePairAlignments=60;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71765712 (chr14:82705589-82706236);Frequency=0.94
chr14	CG	SV	82705594	82706193	60	+	.	ID=2019;Type=deletion;Left=chr14:82705594-82706193;Right=chr14:82706241-82706643
chr14	CG	SV	82706241	82706643	60	+	.	ID=2019;Type=deletion;Left=chr14:82705594-82706193;Right=chr14:82706241-82706643
chr14	CG	SV	84208899	84209797	17	.	.	ID=2018;Type=deletion;Left=chr14:84208899-84209337+;Right=chr14:84209379-84209797+;Distance=480;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72056555 (chr14:84208899-84209378);Frequency=0.65
chr14	CG	SV	84208899	84209337	17	+	.	ID=2018;Type=deletion;Left=chr14:84208899-84209337;Right=chr14:84209379-84209797
chr14	CG	SV	84209379	84209797	17	+	.	ID=2018;Type=deletion;Left=chr14:84208899-84209337;Right=chr14:84209379-84209797
chr14	CG	SV	92995768	92996137	15	.	.	ID=3557;Type=probable-inversion;Left=chr14:92995768-92996025+;Right=chr14:92996060-92996137-;Distance=369;DiscordantMatePairAlignments=15;LeftRepeat=MIRb:SINE:MIR;RightRepeat=MIRb:SINE:MIR;LeftGenes=NM_020818:+;RightGenes=NM_020818:+;XRef=;Frequency=1.00
chr14	CG	SV	92995768	92996025	15	+	.	ID=3557;Type=probable-inversion;Left=chr14:92995768-92996025;Right=chr14:92996060-92996137
chr14	CG	SV	92996060	92996137	15	+	.	ID=3557;Type=probable-inversion;Left=chr14:92995768-92996025;Right=chr14:92996060-92996137
chr14	CG	SV	100062590	100063048	13	.	.	ID=886;Type=tandem-duplication;Left=chr14:100062590-100062801-;Right=chr14:100062870-100063048-;Distance=247;DiscordantMatePairAlignments=13;LeftRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;RightRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;LeftGenes=NM_001161476:+;NM_024515:+;RightGenes=NM_001161476:+;NM_024515:+;XRef=;Frequency=1.00
chr14	CG	SV	100062590	100062801	13	-	.	ID=886;Type=tandem-duplication;Left=chr14:100062590-100062801;Right=chr14:100062870-100063048
chr14	CG	SV	100062870	100063048	13	-	.	ID=886;Type=tandem-duplication;Left=chr14:100062590-100062801;Right=chr14:100062870-100063048
chr14	CG	SV	103432446	103432879	37	.	.	ID=885;Type=tandem-duplication;Left=chr14:103432446-103432642-;Right=chr14:103432785-103432879-;Distance=237;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;Tandem period 33;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	103432446	103432642	37	-	.	ID=885;Type=tandem-duplication;Left=chr14:103432446-103432642;Right=chr14:103432785-103432879
chr14	CG	SV	103432785	103432879	37	-	.	ID=885;Type=tandem-duplication;Left=chr14:103432446-103432642;Right=chr14:103432785-103432879
chr14	CG	SV	104345015	104346281	101	.	.	ID=2013;Type=deletion;Left=chr14:104345015-104345489+;Right=chr14:104345851-104346281+;Distance=836;DiscordantMatePairAlignments=101;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71803557 (chr14:104344945-104345705);Frequency=0.94
chr14	CG	SV	104345015	104345489	101	+	.	ID=2013;Type=deletion;Left=chr14:104345015-104345489;Right=chr14:104345851-104346281
chr14	CG	SV	104345851	104346281	101	+	.	ID=2013;Type=deletion;Left=chr14:104345015-104345489;Right=chr14:104345851-104346281
chr14	CG	SV	105119926	105120379	12	.	.	ID=883;Type=tandem-duplication;Left=chr14:105119926-105120080-;Right=chr14:105120172-105120379-;Distance=299;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;Tandem period 20;RightRepeat=SegDup;Self chain;Tandem period 20;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	105119926	105120080	12	-	.	ID=883;Type=tandem-duplication;Left=chr14:105119926-105120080;Right=chr14:105120172-105120379
chr14	CG	SV	105120172	105120379	12	-	.	ID=883;Type=tandem-duplication;Left=chr14:105119926-105120080;Right=chr14:105120172-105120379
chr14	CG	SV	106108708	106334538	20	.	.	ID=878;Type=tandem-duplication;Left=chr14:106108708-106109115-;Right=chr14:106334068-106334538-;Distance=225423;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr14	CG	SV	106108708	106109115	20	-	.	ID=878;Type=tandem-duplication;Left=chr14:106108708-106109115;Right=chr14:106334068-106334538
chr14	CG	SV	106334068	106334538	20	-	.	ID=878;Type=tandem-duplication;Left=chr14:106108708-106109115;Right=chr14:106334068-106334538
chr14	CG	SV	106232602	106232836	95	.	.	ID=880;Type=tandem-duplication;Left=chr14:106232602-106232718-;Right=chr14:106232699-106232836-;Distance=118;DiscordantMatePairAlignments=95;LeftRepeat=Self chain;Tandem period 59;RightRepeat=Self chain;Tandem period 59;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	106232602	106232718	95	-	.	ID=880;Type=tandem-duplication;Left=chr14:106232602-106232718;Right=chr14:106232699-106232836
chr14	CG	SV	106232699	106232836	95	-	.	ID=880;Type=tandem-duplication;Left=chr14:106232602-106232718;Right=chr14:106232699-106232836
chr15	CG	SV	23497200	23504594	59	.	.	ID=876;Type=tandem-duplication;Left=chr15:23497200-23497698-;Right=chr15:23504009-23504594-;Distance=6896;DiscordantMatePairAlignments=59;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_024490:-;RightGenes=NM_024490:-;XRef=;Frequency=0.00
chr15	CG	SV	23497200	23497698	59	-	.	ID=876;Type=tandem-duplication;Left=chr15:23497200-23497698;Right=chr15:23504009-23504594
chr15	CG	SV	23504009	23504594	59	-	.	ID=876;Type=tandem-duplication;Left=chr15:23497200-23497698;Right=chr15:23504009-23504594
chr15	CG	SV	27198774	27199898	45	.	.	ID=2005;Type=deletion;Left=chr15:27198774-27199310+;Right=chr15:27199196-27199898+;Distance=422;DiscordantMatePairAlignments=45;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=L1MEc:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs67495753 (chr15:27198766-27199188);Frequency=1.00
chr15	CG	SV	27198774	27199310	45	+	.	ID=2005;Type=deletion;Left=chr15:27198774-27199310;Right=chr15:27199196-27199898
chr15	CG	SV	27199196	27199898	45	+	.	ID=2005;Type=deletion;Left=chr15:27198774-27199310;Right=chr15:27199196-27199898
chr15	CG	SV	37054308	37055201	13	.	.	ID=2002;Type=deletion;Left=chr15:37054308-37054923+;Right=chr15:37054662-37055201+;Distance=354;DiscordantMatePairAlignments=13;LeftRepeat=(TTA)n:Simple_repeat:Simple_repeat;Tandem TTA;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71114025 (chr15:37054308-37054662);Frequency=0.94
chr15	CG	SV	37054308	37054923	13	+	.	ID=2002;Type=deletion;Left=chr15:37054308-37054923;Right=chr15:37054662-37055201
chr15	CG	SV	37054662	37055201	13	+	.	ID=2002;Type=deletion;Left=chr15:37054308-37054923;Right=chr15:37054662-37055201
chr15	CG	SV	38609272	38611209	61	.	.	ID=2001;Type=deletion;Left=chr15:38609272-38609764+;Right=chr15:38610933-38611209+;Distance=1661;DiscordantMatePairAlignments=61;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr15	CG	SV	38609272	38609764	61	+	.	ID=2001;Type=deletion;Left=chr15:38609272-38609764;Right=chr15:38610933-38611209
chr15	CG	SV	38610933	38611209	61	+	.	ID=2001;Type=deletion;Left=chr15:38609272-38609764;Right=chr15:38610933-38611209
chr15	CG	SV	39653307	39657854	14	.	.	ID=1994;Type=deletion;Left=chr15:39653307-39654056+;Right=chr15:39657377-39657854+;Distance=4070;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_006293:+;RightGenes=NM_006293:+;XRef=rs71638058 (chr15:39653305-39657375);Frequency=0.24
chr15	CG	SV	39653307	39654056	14	+	.	ID=1994;Type=deletion;Left=chr15:39653307-39654056;Right=chr15:39657377-39657854
chr15	CG	SV	39657377	39657854	14	+	.	ID=1994;Type=deletion;Left=chr15:39653307-39654056;Right=chr15:39657377-39657854
chr15	CG	SV	43855272	43856179	15	.	.	ID=1992;Type=deletion;Left=chr15:43855272-43855836+;Right=chr15:43855622-43856179+;Distance=350;DiscordantMatePairAlignments=15;LeftRepeat=L1MEa:LINE:L1;Tandem T;RightRepeat=L1MEa:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67712655 (chr15:43855272-43855622);Frequency=1.00
chr15	CG	SV	43855272	43855836	15	+	.	ID=1992;Type=deletion;Left=chr15:43855272-43855836;Right=chr15:43855622-43856179
chr15	CG	SV	43855622	43856179	15	+	.	ID=1992;Type=deletion;Left=chr15:43855272-43855836;Right=chr15:43855622-43856179
chr15	CG	SV	53005510	53012542	42	.	.	ID=1989;Type=deletion;Left=chr15:53005510-53005974+;Right=chr15:53011719-53012542+;Distance=6209;DiscordantMatePairAlignments=42;LeftRepeat=L1M1:LINE:L1;RightRepeat=L1ME3:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71114035 (chr15:53005522-53011731);Frequency=1.00
chr15	CG	SV	53005510	53005974	42	+	.	ID=1989;Type=deletion;Left=chr15:53005510-53005974;Right=chr15:53011719-53012542
chr15	CG	SV	53011719	53012542	42	+	.	ID=1989;Type=deletion;Left=chr15:53005510-53005974;Right=chr15:53011719-53012542
chr15	CG	SV	57500190	57501074	10	.	.	ID=1987;Type=deletion;Left=chr15:57500190-57500621+;Right=chr15:57500521-57501074+;Distance=331;DiscordantMatePairAlignments=10;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67321160 (chr15:57500178-57500509);Frequency=1.00
chr15	CG	SV	57500190	57500621	10	+	.	ID=1987;Type=deletion;Left=chr15:57500190-57500621;Right=chr15:57500521-57501074
chr15	CG	SV	57500521	57501074	10	+	.	ID=1987;Type=deletion;Left=chr15:57500190-57500621;Right=chr15:57500521-57501074
chr15	CG	SV	65191558	65192989	13	.	.	ID=1985;Type=deletion;Left=chr15:65191558-65191829+;Right=chr15:65192658-65192989+;Distance=1100;DiscordantMatePairAlignments=13;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_005902:+;RightGenes=NM_005902:+;XRef=;Frequency=0.18
chr15	CG	SV	65191558	65191829	13	+	.	ID=1985;Type=deletion;Left=chr15:65191558-65191829;Right=chr15:65192658-65192989
chr15	CG	SV	65192658	65192989	13	+	.	ID=1985;Type=deletion;Left=chr15:65191558-65191829;Right=chr15:65192658-65192989
chr15	CG	SV	65321533	65322420	14	.	.	ID=1984;Type=deletion;Left=chr15:65321533-65322029+;Right=chr15:65321867-65322420+;Distance=334;DiscordantMatePairAlignments=14;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_024666:-;RightGenes=NM_024666:-;XRef=rs72322625 (chr15:65321533-65321867);Frequency=0.41
chr15	CG	SV	65321533	65322029	14	+	.	ID=1984;Type=deletion;Left=chr15:65321533-65322029;Right=chr15:65321867-65322420
chr15	CG	SV	65321867	65322420	14	+	.	ID=1984;Type=deletion;Left=chr15:65321533-65322029;Right=chr15:65321867-65322420
chr15	CG	SV	66213059	66216570	107	.	.	ID=1983;Type=deletion;Left=chr15:66213059-66213534+;Right=chr15:66215984-66216570+;Distance=2925;DiscordantMatePairAlignments=107;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_016166:+;RightGenes=NM_016166:+;XRef=rs67675605 (chr15:66213056-66215981);Frequency=1.00
chr15	CG	SV	66213059	66213534	107	+	.	ID=1983;Type=deletion;Left=chr15:66213059-66213534;Right=chr15:66215984-66216570
chr15	CG	SV	66215984	66216570	107	+	.	ID=1983;Type=deletion;Left=chr15:66213059-66213534;Right=chr15:66215984-66216570
chr15	CG	SV	69495663	69501043	10	.	.	ID=1981;Type=deletion;Left=chr15:69495663-69496162+;Right=chr15:69500744-69501043+;Distance=5081;DiscordantMatePairAlignments=10;LeftRepeat=L1MA2:LINE:L1;Self chain;RightRepeat=L1M1:LINE:L1;Self chain;LeftGenes=NM_024817:+;RightGenes=NM_024817:+;XRef=;Frequency=0.47
chr15	CG	SV	69495663	69496162	10	+	.	ID=1981;Type=deletion;Left=chr15:69495663-69496162;Right=chr15:69500744-69501043
chr15	CG	SV	69500744	69501043	10	+	.	ID=1981;Type=deletion;Left=chr15:69495663-69496162;Right=chr15:69500744-69501043
chr15	CG	SV	69804361	69805190	13	.	.	ID=1979;Type=deletion;Left=chr15:69804361-69804762+;Right=chr15:69804721-69805190+;Distance=360;DiscordantMatePairAlignments=13;LeftRepeat=L2:LINE:L2;Self chain;Tandem period 180;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_024817:+;RightGenes=NM_024817:+;XRef=rs71114044 (chr15:69804361-69804721);Frequency=1.00
chr15	CG	SV	69804361	69804762	13	+	.	ID=1979;Type=deletion;Left=chr15:69804361-69804762;Right=chr15:69804721-69805190
chr15	CG	SV	69804721	69805190	13	+	.	ID=1979;Type=deletion;Left=chr15:69804361-69804762;Right=chr15:69804721-69805190
chr15	CG	SV	75697927	75698819	21	.	.	ID=1976;Type=deletion;Left=chr15:75697927-75698445+;Right=chr15:75698301-75698819+;Distance=374;DiscordantMatePairAlignments=21;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_032808:-;RightGenes=NM_032808:-;XRef=rs66895003 (chr15:75697927-75698301);Frequency=1.00
chr15	CG	SV	75697927	75698445	21	+	.	ID=1976;Type=deletion;Left=chr15:75697927-75698445;Right=chr15:75698301-75698819
chr15	CG	SV	75698301	75698819	21	+	.	ID=1976;Type=deletion;Left=chr15:75697927-75698445;Right=chr15:75698301-75698819
chr15	CG	SV	77592040	77592699	16	.	.	ID=1975;Type=deletion;Left=chr15:77592040-77592651+;Right=chr15:77592399-77592699+;Distance=359;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 359;RightRepeat=Self chain;Tandem period 359;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr15	CG	SV	77592040	77592651	16	+	.	ID=1975;Type=deletion;Left=chr15:77592040-77592651;Right=chr15:77592399-77592699
chr15	CG	SV	77592399	77592699	16	+	.	ID=1975;Type=deletion;Left=chr15:77592040-77592651;Right=chr15:77592399-77592699
chr15	CG	SV	85500980	85501969	26	.	.	ID=1971;Type=deletion;Left=chr15:85500980-85501415+;Right=chr15:85501463-85501969+;Distance=483;DiscordantMatePairAlignments=26;LeftRepeat=(TTCC)n:Simple_repeat:Simple_repeat;Tandem TTCC;Tandem period 28;Tandem period 43;Tandem period 71;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem TTCC;Tandem period 28;Tandem period 43;Tandem period 71;LeftGenes=;RightGenes=;XRef=rs67982659 (chr15:85501027-85501436);Frequency=0.71
chr15	CG	SV	85500980	85501415	26	+	.	ID=1971;Type=deletion;Left=chr15:85500980-85501415;Right=chr15:85501463-85501969
chr15	CG	SV	85501463	85501969	26	+	.	ID=1971;Type=deletion;Left=chr15:85500980-85501415;Right=chr15:85501463-85501969
chr15	CG	SV	89782584	89790609	34	.	.	ID=1969;Type=deletion;Left=chr15:89782584-89783183+;Right=chr15:89790272-89790609+;Distance=7688;DiscordantMatePairAlignments=34;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr15	CG	SV	89782584	89783183	34	+	.	ID=1969;Type=deletion;Left=chr15:89782584-89783183;Right=chr15:89790272-89790609
chr15	CG	SV	89790272	89790609	34	+	.	ID=1969;Type=deletion;Left=chr15:89782584-89783183;Right=chr15:89790272-89790609
chr15	CG	SV	91316802	91317703	17	.	.	ID=1968;Type=deletion;Left=chr15:91316802-91317391+;Right=chr15:91317115-91317703+;Distance=313;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001271:+;RightGenes=NM_001271:+;XRef=rs67178621 (chr15:91316802-91317115);Frequency=0.94
chr15	CG	SV	91316802	91317391	17	+	.	ID=1968;Type=deletion;Left=chr15:91316802-91317391;Right=chr15:91317115-91317703
chr15	CG	SV	91317115	91317703	17	+	.	ID=1968;Type=deletion;Left=chr15:91316802-91317391;Right=chr15:91317115-91317703
chr15	CG	SV	96717592	96718610	48	.	.	ID=1966;Type=deletion;Left=chr15:96717592-96718041+;Right=chr15:96718158-96718610+;Distance=566;DiscordantMatePairAlignments=48;LeftRepeat=L1MC:LINE:L1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67424211 (chr15:96717594-96718160);Frequency=0.71
chr15	CG	SV	96717592	96718041	48	+	.	ID=1966;Type=deletion;Left=chr15:96717592-96718041;Right=chr15:96718158-96718610
chr15	CG	SV	96718158	96718610	48	+	.	ID=1966;Type=deletion;Left=chr15:96717592-96718041;Right=chr15:96718158-96718610
chr15	CG	SV	98869353	98870200	17	.	.	ID=1964;Type=deletion;Left=chr15:98869353-98869716+;Right=chr15:98869855-98870200+;Distance=502;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem period 63;RightRepeat=Self chain;LeftGenes=NM_178842:-;RightGenes=NM_178842:-;XRef=rs72451132 (chr15:98869262-98869701);Frequency=1.00
chr15	CG	SV	98869353	98869716	17	+	.	ID=1964;Type=deletion;Left=chr15:98869353-98869716;Right=chr15:98869855-98870200
chr15	CG	SV	98869855	98870200	17	+	.	ID=1964;Type=deletion;Left=chr15:98869353-98869716;Right=chr15:98869855-98870200
chr15	CG	SV	99844016	100131539	53	.	.	ID=869;Type=tandem-duplication;Left=chr15:99844016-99844519-;Right=chr15:100130957-100131539-;Distance=287020;DiscordantMatePairAlignments=53;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=NM_002570:-;NM_138319:-;NM_138320:-;NM_138321:-;NM_138322:-;NM_138323:-;NM_138324:-;NM_138325:-;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	99844016	99844519	53	-	.	ID=869;Type=tandem-duplication;Left=chr15:99844016-99844519;Right=chr15:100130957-100131539
chr15	CG	SV	100130957	100131539	53	-	.	ID=869;Type=tandem-duplication;Left=chr15:99844016-99844519;Right=chr15:100130957-100131539
chr15	CG	SV	99968989	99983555	67	.	.	ID=3555;Type=probable-inversion;Left=chr15:99968989-99969539+;Right=chr15:99983134-99983555-;Distance=14566;DiscordantMatePairAlignments=67;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	99968989	99969539	67	+	.	ID=3555;Type=probable-inversion;Left=chr15:99968989-99969539;Right=chr15:99983134-99983555
chr15	CG	SV	99983134	99983555	67	+	.	ID=3555;Type=probable-inversion;Left=chr15:99968989-99969539;Right=chr15:99983134-99983555
chr15	CG	SV	99981886	100040150	173	.	.	ID=220;Type=probable-inversion;Left=chr15:99981886-99982422-;Right=chr15:100039687-100040150+;Distance=57265;DiscordantMatePairAlignments=173;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=NM_152334:-;XRef=;Frequency=0.00
chr15	CG	SV	99981886	99982422	173	-	.	ID=220;Type=probable-inversion;Left=chr15:99981886-99982422;Right=chr15:100039687-100040150
chr15	CG	SV	100039687	100040150	173	-	.	ID=220;Type=probable-inversion;Left=chr15:99981886-99982422;Right=chr15:100039687-100040150
chr16	CG	SV	1362901	1364523	38	.	.	ID=1962;Type=deletion;Left=chr16:1362901-1363364+;Right=chr16:1364219-1364523+;Distance=1318;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;Tandem period 55;RightRepeat=Self chain;LeftGenes=NM_023076:-;RightGenes=NM_023076:-;XRef=;Frequency=1.00
chr16	CG	SV	1362901	1363364	38	+	.	ID=1962;Type=deletion;Left=chr16:1362901-1363364;Right=chr16:1364219-1364523
chr16	CG	SV	1364219	1364523	38	+	.	ID=1962;Type=deletion;Left=chr16:1362901-1363364;Right=chr16:1364219-1364523
chr16	CG	SV	11591258	11593290	25	.	.	ID=1868;Type=deletion;Left=chr16:11591258-11591825+;Right=chr16:11592819-11593290+;Distance=1561;DiscordantMatePairAlignments=25;LeftRepeat=AluJo:SINE:Alu;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr16	CG	SV	11591258	11591825	25	+	.	ID=1868;Type=deletion;Left=chr16:11591258-11591825;Right=chr16:11592819-11593290
chr16	CG	SV	11592819	11593290	25	+	.	ID=1868;Type=deletion;Left=chr16:11591258-11591825;Right=chr16:11592819-11593290
chr16	CG	SV	14360737	14361803	13	.	.	ID=1867;Type=deletion;Left=chr16:14360737-14361337+;Right=chr16:14361155-14361803+;Distance=418;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=rs72460419 (chr16:14360736-14361154);Frequency=0.00
chr16	CG	SV	14360737	14361337	13	+	.	ID=1867;Type=deletion;Left=chr16:14360737-14361337;Right=chr16:14361155-14361803
chr16	CG	SV	14361155	14361803	13	+	.	ID=1867;Type=deletion;Left=chr16:14360737-14361337;Right=chr16:14361155-14361803
chr16	CG	SV	14488263	33858184	168	.	.	ID=73;Type=complex;Left=chr16:14488263-14488376-;Right=chr16:33857677-33858184+;Distance=19369301;DiscordantMatePairAlignments=168;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=NM_001134477:-;NM_002582:-;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	14488263	14488376	168	-	.	ID=73;Type=complex;Left=chr16:14488263-14488376;Right=chr16:33857677-33858184
chr16	CG	SV	33857677	33858184	168	-	.	ID=73;Type=complex;Left=chr16:14488263-14488376;Right=chr16:33857677-33858184
chr16	CG	SV	16841872	16848429	97	.	.	ID=1866;Type=deletion;Left=chr16:16841872-16842385+;Right=chr16:16847923-16848429+;Distance=6051;DiscordantMatePairAlignments=97;LeftRepeat=Self chain;RightRepeat=L1ME3B:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71962966 (chr16:16841879-16847930);Frequency=0.94
chr16	CG	SV	16841872	16842385	97	+	.	ID=1866;Type=deletion;Left=chr16:16841872-16842385;Right=chr16:16847923-16848429
chr16	CG	SV	16847923	16848429	97	+	.	ID=1866;Type=deletion;Left=chr16:16841872-16842385;Right=chr16:16847923-16848429
chr16	CG	SV	18740045	18746274	10	.	.	ID=1865;Type=deletion;Left=chr16:18740045-18740530+;Right=chr16:18745897-18746274+;Distance=5852;DiscordantMatePairAlignments=10;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_015092:-;RightGenes=NM_015092:-;XRef=rs67687398 (chr16:18740025-18745877);Frequency=0.88
chr16	CG	SV	18740045	18740530	10	+	.	ID=1865;Type=deletion;Left=chr16:18740045-18740530;Right=chr16:18745897-18746274
chr16	CG	SV	18745897	18746274	10	+	.	ID=1865;Type=deletion;Left=chr16:18740045-18740530;Right=chr16:18745897-18746274
chr16	CG	SV	20150831	20199992	40	.	.	ID=759;Type=tandem-duplication;Left=chr16:20150831-20151282-;Right=chr16:20199406-20199992-;Distance=48710;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	20150831	20151282	40	-	.	ID=759;Type=tandem-duplication;Left=chr16:20150831-20151282;Right=chr16:20199406-20199992
chr16	CG	SV	20199406	20199992	40	-	.	ID=759;Type=tandem-duplication;Left=chr16:20150831-20151282;Right=chr16:20199406-20199992
chr16	CG	SV	22955276	22957580	207	.	.	ID=1861;Type=deletion;Left=chr16:22955276-22955842+;Right=chr16:22957032-22957580+;Distance=1756;DiscordantMatePairAlignments=207;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67692612 (chr16:22955282-22957032);Frequency=0.88
chr16	CG	SV	22955276	22955842	207	+	.	ID=1861;Type=deletion;Left=chr16:22955276-22955842;Right=chr16:22957032-22957580
chr16	CG	SV	22957032	22957580	207	+	.	ID=1861;Type=deletion;Left=chr16:22955276-22955842;Right=chr16:22957032-22957580
chr16	CG	SV	24413171	24633756	22	.	.	ID=758;Type=tandem-duplication;Left=chr16:24413171-24413589-;Right=chr16:24633432-24633756-;Distance=220167;DiscordantMatePairAlignments=22;LeftRepeat=AluJ:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	24413171	24413589	22	-	.	ID=758;Type=tandem-duplication;Left=chr16:24413171-24413589;Right=chr16:24633432-24633756
chr16	CG	SV	24633432	24633756	22	-	.	ID=758;Type=tandem-duplication;Left=chr16:24413171-24413589;Right=chr16:24633432-24633756
chr16	CG	SV	26292296	26293776	53	.	.	ID=757;Type=tandem-duplication;Left=chr16:26292296-26292872-;Right=chr16:26293310-26293776-;Distance=904;DiscordantMatePairAlignments=53;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;Tandem GATG;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	26292296	26292872	53	-	.	ID=757;Type=tandem-duplication;Left=chr16:26292296-26292872;Right=chr16:26293310-26293776
chr16	CG	SV	26293310	26293776	53	-	.	ID=757;Type=tandem-duplication;Left=chr16:26292296-26292872;Right=chr16:26293310-26293776
chr16	CG	SV	26515538	26516437	10	.	.	ID=1859;Type=deletion;Left=chr16:26515538-26516104+;Right=chr16:26515880-26516437+;Distance=342;DiscordantMatePairAlignments=10;LeftRepeat=L1MD3:LINE:L1;Self chain;Tandem T;RightRepeat=L1MD3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71136521 (chr16:26515538-26515880);Frequency=1.00
chr16	CG	SV	26515538	26516104	10	+	.	ID=1859;Type=deletion;Left=chr16:26515538-26516104;Right=chr16:26515880-26516437
chr16	CG	SV	26515880	26516437	10	+	.	ID=1859;Type=deletion;Left=chr16:26515538-26516104;Right=chr16:26515880-26516437
chr16	CG	SV	29716255	30966163	184	.	.	ID=756;Type=tandem-duplication;Left=chr16:29716255-29716800-;Right=chr16:30965743-30966163-;Distance=1249363;DiscordantMatePairAlignments=184;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	29716255	29716800	184	-	.	ID=756;Type=tandem-duplication;Left=chr16:29716255-29716800;Right=chr16:30965743-30966163
chr16	CG	SV	30965743	30966163	184	-	.	ID=756;Type=tandem-duplication;Left=chr16:29716255-29716800;Right=chr16:30965743-30966163
chr16	CG	SV	33829643	33830964	13	.	.	ID=1855;Type=deletion;Left=chr16:33829643-33829896+;Right=chr16:33830566-33830964+;Distance=923;DiscordantMatePairAlignments=13;LeftRepeat=L1MEc:LINE:L1;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	33829643	33829896	13	+	.	ID=1855;Type=deletion;Left=chr16:33829643-33829896;Right=chr16:33830566-33830964
chr16	CG	SV	33830566	33830964	13	+	.	ID=1855;Type=deletion;Left=chr16:33829643-33829896;Right=chr16:33830566-33830964
chr16	CG	SV	33834286	33840648	14	.	.	ID=1854;Type=deletion;Left=chr16:33834286-33834743+;Right=chr16:33840259-33840648+;Distance=5973;DiscordantMatePairAlignments=14;LeftRepeat=L1PA4:LINE:L1;SegDup;Self chain;RightRepeat=L1MA9:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr16	CG	SV	33834286	33834743	14	+	.	ID=1854;Type=deletion;Left=chr16:33834286-33834743;Right=chr16:33840259-33840648
chr16	CG	SV	33840259	33840648	14	+	.	ID=1854;Type=deletion;Left=chr16:33834286-33834743;Right=chr16:33840259-33840648
chr16	CG	SV	33857196	33858091	20	.	.	ID=1851;Type=complex;Left=chr16:33857196-33857710+;Right=chr16:33857588-33858091+;Distance=392;DiscordantMatePairAlignments=20;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	33857196	33857710	20	+	.	ID=1851;Type=complex;Left=chr16:33857196-33857710;Right=chr16:33857588-33858091
chr16	CG	SV	33857588	33858091	20	+	.	ID=1851;Type=complex;Left=chr16:33857196-33857710;Right=chr16:33857588-33858091
chr16	CG	SV	33859795	33863532	103	.	.	ID=754;Type=tandem-duplication;Left=chr16:33859795-33860096-;Right=chr16:33862767-33863532-;Distance=3436;DiscordantMatePairAlignments=103;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	33859795	33860096	103	-	.	ID=754;Type=tandem-duplication;Left=chr16:33859795-33860096;Right=chr16:33862767-33863532
chr16	CG	SV	33862767	33863532	103	-	.	ID=754;Type=tandem-duplication;Left=chr16:33859795-33860096;Right=chr16:33862767-33863532
chr16	CG	SV	56282896	56285886	163	.	.	ID=1845;Type=deletion;Left=chr16:56282896-56283223+;Right=chr16:56285347-56285886+;Distance=2451;DiscordantMatePairAlignments=163;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr16	CG	SV	56282896	56283223	163	+	.	ID=1845;Type=deletion;Left=chr16:56282896-56283223;Right=chr16:56285347-56285886
chr16	CG	SV	56285347	56285886	163	+	.	ID=1845;Type=deletion;Left=chr16:56282896-56283223;Right=chr16:56285347-56285886
chr16	CG	SV	59467542	59471936	28	.	.	ID=1842;Type=deletion;Left=chr16:59467542-59468201+;Right=chr16:59471429-59471936+;Distance=3887;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr16	CG	SV	59467542	59468201	28	+	.	ID=1842;Type=deletion;Left=chr16:59467542-59468201;Right=chr16:59471429-59471936
chr16	CG	SV	59471429	59471936	28	+	.	ID=1842;Type=deletion;Left=chr16:59467542-59468201;Right=chr16:59471429-59471936
chr16	CG	SV	68319024	68321052	36	.	.	ID=71;Type=distal-duplication;Left=chr16:68319024-68319320-;Right=chr16:68320549-68321052+;Distance=1229;DiscordantMatePairAlignments=36;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr16	CG	SV	68319024	68319320	36	-	.	ID=71;Type=distal-duplication;Left=chr16:68319024-68319320;Right=chr16:68320549-68321052
chr16	CG	SV	68320549	68321052	36	-	.	ID=71;Type=distal-duplication;Left=chr16:68319024-68319320;Right=chr16:68320549-68321052
chr16	CG	SV	68319632	68320388	106	.	.	ID=3454;Type=distal-duplication;Left=chr16:68319632-68319917+;Right=chr16:68319832-68320388-;Distance=756;DiscordantMatePairAlignments=106;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr16	CG	SV	68319632	68319917	106	+	.	ID=3454;Type=distal-duplication;Left=chr16:68319632-68319917;Right=chr16:68319832-68320388
chr16	CG	SV	68319832	68320388	106	+	.	ID=3454;Type=distal-duplication;Left=chr16:68319632-68319917;Right=chr16:68319832-68320388
chr16	CG	SV	68411832	68416522	12	.	.	ID=1840;Type=distal-duplication;Left=chr16:68411832-68412281+;Right=chr16:68416306-68416522+;Distance=4474;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_007014:+;NM_199423:+;RightGenes=NM_007014:+;NM_199423:+;XRef=;Frequency=0.41
chr16	CG	SV	68411832	68412281	12	+	.	ID=1840;Type=distal-duplication;Left=chr16:68411832-68412281;Right=chr16:68416306-68416522
chr16	CG	SV	68416306	68416522	12	+	.	ID=1840;Type=distal-duplication;Left=chr16:68411832-68412281;Right=chr16:68416306-68416522
chr16	CG	SV	68411466	68416522	25	.	.	ID=748;Type=distal-duplication;Left=chr16:68411466-68412186-;Right=chr16:68416396-68416522-;Distance=4336;DiscordantMatePairAlignments=25;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=Self chain;LeftGenes=NM_007014:+;NM_199423:+;RightGenes=NM_007014:+;NM_199423:+;XRef=;Frequency=0.41
chr16	CG	SV	68411466	68412186	25	-	.	ID=748;Type=distal-duplication;Left=chr16:68411466-68412186;Right=chr16:68416396-68416522
chr16	CG	SV	68416396	68416522	25	-	.	ID=748;Type=distal-duplication;Left=chr16:68411466-68412186;Right=chr16:68416396-68416522
chr16	CG	SV	69535299	69537909	184	.	.	ID=1838;Type=deletion;Left=chr16:69535299-69535804+;Right=chr16:69537394-69537909+;Distance=2095;DiscordantMatePairAlignments=184;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_032821:-;RightGenes=NM_032821:-;XRef=rs67363752 (chr16:69535300-69537395);Frequency=1.00
chr16	CG	SV	69535299	69535804	184	+	.	ID=1838;Type=deletion;Left=chr16:69535299-69535804;Right=chr16:69537394-69537909
chr16	CG	SV	69537394	69537909	184	+	.	ID=1838;Type=deletion;Left=chr16:69535299-69535804;Right=chr16:69537394-69537909
chr16	CG	SV	69721878	69722739	13	.	.	ID=1837;Type=deletion;Left=chr16:69721878-69722270+;Right=chr16:69722205-69722739+;Distance=327;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_017558:-;NM_032821:-;RightGenes=NM_017558:-;NM_032821:-;XRef=;Frequency=1.00
chr16	CG	SV	69721878	69722270	13	+	.	ID=1837;Type=deletion;Left=chr16:69721878-69722270;Right=chr16:69722205-69722739
chr16	CG	SV	69722205	69722739	13	+	.	ID=1837;Type=deletion;Left=chr16:69721878-69722270;Right=chr16:69722205-69722739
chr16	CG	SV	73987398	73988356	20	.	.	ID=1834;Type=deletion;Left=chr16:73987398-73988049+;Right=chr16:73988240-73988356+;Distance=842;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_006324:-;RightGenes=NM_006324:-;XRef=;Frequency=0.82
chr16	CG	SV	73987398	73988049	20	+	.	ID=1834;Type=deletion;Left=chr16:73987398-73988049;Right=chr16:73988240-73988356
chr16	CG	SV	73988240	73988356	20	+	.	ID=1834;Type=deletion;Left=chr16:73987398-73988049;Right=chr16:73988240-73988356
chr16	CG	SV	75096634	75102093	103	.	.	ID=1833;Type=deletion;Left=chr16:75096634-75097197+;Right=chr16:75101526-75102093+;Distance=4892;DiscordantMatePairAlignments=103;LeftRepeat=L1ME1:LINE:L1;Self chain;RightRepeat=L1MB8:LINE:L1;Self chain;LeftGenes=NM_033401:+;NM_138994:+;RightGenes=NM_033401:+;NM_138994:+;XRef=rs67420665 (chr16:75096635-75101526);Frequency=1.00
chr16	CG	SV	75096634	75097197	103	+	.	ID=1833;Type=deletion;Left=chr16:75096634-75097197;Right=chr16:75101526-75102093
chr16	CG	SV	75101526	75102093	103	+	.	ID=1833;Type=deletion;Left=chr16:75096634-75097197;Right=chr16:75101526-75102093
chr16	CG	SV	76613600	76838182	41	.	.	ID=747;Type=tandem-duplication;Left=chr16:76613600-76614057-;Right=chr16:76837651-76838182-;Distance=224125;DiscordantMatePairAlignments=41;LeftRepeat=;RightRepeat=;LeftGenes=NM_005752:+;RightGenes=NM_016373:+;NM_130791:+;XRef=;Frequency=0.00
chr16	CG	SV	76613600	76614057	41	-	.	ID=747;Type=tandem-duplication;Left=chr16:76613600-76614057;Right=chr16:76837651-76838182
chr16	CG	SV	76837651	76838182	41	-	.	ID=747;Type=tandem-duplication;Left=chr16:76613600-76614057;Right=chr16:76837651-76838182
chr16	CG	SV	79731420	79732244	49	.	.	ID=1831;Type=deletion;Left=chr16:79731420-79731986+;Right=chr16:79731927-79732244+;Distance=507;DiscordantMatePairAlignments=49;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_052892:-;RightGenes=NM_052892:-;XRef=rs71136601 (chr16:79731342-79731850);Frequency=0.94
chr16	CG	SV	79731420	79731986	49	+	.	ID=1831;Type=deletion;Left=chr16:79731420-79731986;Right=chr16:79731927-79732244
chr16	CG	SV	79731927	79732244	49	+	.	ID=1831;Type=deletion;Left=chr16:79731420-79731986;Right=chr16:79731927-79732244
chr16	CG	SV	80355836	80356702	88	.	.	ID=746;Type=tandem-duplication;Left=chr16:80355836-80356159-;Right=chr16:80356206-80356702-;Distance=543;DiscordantMatePairAlignments=88;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr16	CG	SV	80355836	80356159	88	-	.	ID=746;Type=tandem-duplication;Left=chr16:80355836-80356159;Right=chr16:80356206-80356702
chr16	CG	SV	80356206	80356702	88	-	.	ID=746;Type=tandem-duplication;Left=chr16:80355836-80356159;Right=chr16:80356206-80356702
chr16	CG	SV	83745574	83747669	62	.	.	ID=69;Type=distal-duplication;Left=chr16:83745574-83746170-;Right=chr16:83747348-83747669+;Distance=1178;DiscordantMatePairAlignments=62;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	83745574	83746170	62	-	.	ID=69;Type=distal-duplication;Left=chr16:83745574-83746170;Right=chr16:83747348-83747669
chr16	CG	SV	83747348	83747669	62	-	.	ID=69;Type=distal-duplication;Left=chr16:83745574-83746170;Right=chr16:83747348-83747669
chr16	CG	SV	83746438	83747116	46	.	.	ID=3453;Type=distal-duplication;Left=chr16:83746438-83747021+;Right=chr16:83746822-83747116-;Distance=678;DiscordantMatePairAlignments=46;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	83746438	83747021	46	+	.	ID=3453;Type=distal-duplication;Left=chr16:83746438-83747021;Right=chr16:83746822-83747116
chr16	CG	SV	83746822	83747116	46	+	.	ID=3453;Type=distal-duplication;Left=chr16:83746438-83747021;Right=chr16:83746822-83747116
chr17	CG	SV	20656	22190	105	.	.	ID=1828;Type=deletion;Left=chr17:20656-21095+;Right=chr17:21796-22190+;Distance=1140;DiscordantMatePairAlignments=105;LeftRepeat=(CCGGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 32;Tandem period 98;RightRepeat=SUBTEL_sa:Satellite:Satellite;Self chain;Tandem period 32;Tandem period 98;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr17	CG	SV	20656	21095	105	+	.	ID=1828;Type=deletion;Left=chr17:20656-21095;Right=chr17:21796-22190
chr17	CG	SV	21796	22190	105	+	.	ID=1828;Type=deletion;Left=chr17:20656-21095;Right=chr17:21796-22190
chr17	CG	SV	203146	203431	14	.	.	ID=744;Type=tandem-duplication;Left=chr17:203146-203334-;Right=chr17:203349-203431-;Distance=97;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 97;RightRepeat=Self chain;Tandem period 97;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr17	CG	SV	203146	203334	14	-	.	ID=744;Type=tandem-duplication;Left=chr17:203146-203334;Right=chr17:203349-203431
chr17	CG	SV	203349	203431	14	-	.	ID=744;Type=tandem-duplication;Left=chr17:203146-203334;Right=chr17:203349-203431
chr17	CG	SV	670609	671947	16	.	.	ID=1822;Type=deletion;Left=chr17:670609-671155+;Right=chr17:671748-671947+;Distance=1139;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem period 312;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_022463:-;RightGenes=NM_022463:-;XRef=;Frequency=0.94
chr17	CG	SV	670609	671155	16	+	.	ID=1822;Type=deletion;Left=chr17:670609-671155;Right=chr17:671748-671947
chr17	CG	SV	671748	671947	16	+	.	ID=1822;Type=deletion;Left=chr17:670609-671155;Right=chr17:671748-671947
chr17	CG	SV	685760	686643	31	.	.	ID=1821;Type=deletion;Left=chr17:685760-686203+;Right=chr17:686161-686643+;Distance=401;DiscordantMatePairAlignments=31;LeftRepeat=Self chain;Tandem period 133;Tandem period 45;RightRepeat=Self chain;LeftGenes=NM_022463:-;RightGenes=NM_022463:-;XRef=rs71371583 (chr17:685701-686103);Frequency=0.65
chr17	CG	SV	685760	686203	31	+	.	ID=1821;Type=deletion;Left=chr17:685760-686203;Right=chr17:686161-686643
chr17	CG	SV	686161	686643	31	+	.	ID=1821;Type=deletion;Left=chr17:685760-686203;Right=chr17:686161-686643
chr17	CG	SV	1068561	1070015	26	.	.	ID=63;Type=probable-inversion;Left=chr17:1068561-1069110-;Right=chr17:1069788-1070015+;Distance=678;DiscordantMatePairAlignments=26;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr17	CG	SV	1068561	1069110	26	-	.	ID=63;Type=probable-inversion;Left=chr17:1068561-1069110;Right=chr17:1069788-1070015
chr17	CG	SV	1069788	1070015	26	-	.	ID=63;Type=probable-inversion;Left=chr17:1068561-1069110;Right=chr17:1069788-1070015
chr17	CG	SV	1093322	1094814	12	.	.	ID=1820;Type=deletion;Left=chr17:1093322-1093847+;Right=chr17:1094664-1094814+;Distance=1342;DiscordantMatePairAlignments=12;LeftRepeat=Alu:SINE:Alu;Self chain;RightRepeat=L1M:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr17	CG	SV	1093322	1093847	12	+	.	ID=1820;Type=deletion;Left=chr17:1093322-1093847;Right=chr17:1094664-1094814
chr17	CG	SV	1094664	1094814	12	+	.	ID=1820;Type=deletion;Left=chr17:1093322-1093847;Right=chr17:1094664-1094814
chr17	CG	SV	1601419	1602631	32	.	.	ID=1819;Type=deletion;Left=chr17:1601419-1601984+;Right=chr17:1602150-1602631+;Distance=731;DiscordantMatePairAlignments=32;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSq:SINE:Alu;LeftGenes=NM_000934:+;NM_001165920:+;NM_001165921:+;RightGenes=NM_000934:+;NM_001165920:+;NM_001165921:+;XRef=;Frequency=0.47
chr17	CG	SV	1601419	1601984	32	+	.	ID=1819;Type=deletion;Left=chr17:1601419-1601984;Right=chr17:1602150-1602631
chr17	CG	SV	1602150	1602631	32	+	.	ID=1819;Type=deletion;Left=chr17:1601419-1601984;Right=chr17:1602150-1602631
chr17	CG	SV	8187408	8189199	54	.	.	ID=1817;Type=deletion;Left=chr17:8187408-8188091+;Right=chr17:8188764-8189199+;Distance=1356;DiscordantMatePairAlignments=54;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_153007:+;RightGenes=NM_153007:+;XRef=;Frequency=0.29
chr17	CG	SV	8187408	8188091	54	+	.	ID=1817;Type=deletion;Left=chr17:8187408-8188091;Right=chr17:8188764-8189199
chr17	CG	SV	8188764	8189199	54	+	.	ID=1817;Type=deletion;Left=chr17:8187408-8188091;Right=chr17:8188764-8189199
chr17	CG	SV	14130636	14132766	35	.	.	ID=1815;Type=deletion;Left=chr17:14130636-14131099+;Right=chr17:14132281-14132766+;Distance=1645;DiscordantMatePairAlignments=35;LeftRepeat=MER49:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71143412 (chr17:14130636-14132281);Frequency=1.00
chr17	CG	SV	14130636	14131099	35	+	.	ID=1815;Type=deletion;Left=chr17:14130636-14131099;Right=chr17:14132281-14132766
chr17	CG	SV	14132281	14132766	35	+	.	ID=1815;Type=deletion;Left=chr17:14130636-14131099;Right=chr17:14132281-14132766
chr17	CG	SV	17171101	17172481	131	.	.	ID=1813;Type=deletion;Left=chr17:17171101-17171618+;Right=chr17:17171977-17172481+;Distance=876;DiscordantMatePairAlignments=131;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_020201:+;RightGenes=NM_020201:+;XRef=rs66473553 (chr17:17171082-17171958);Frequency=0.82
chr17	CG	SV	17171101	17171618	131	+	.	ID=1813;Type=deletion;Left=chr17:17171101-17171618;Right=chr17:17171977-17172481
chr17	CG	SV	17171977	17172481	131	+	.	ID=1813;Type=deletion;Left=chr17:17171101-17171618;Right=chr17:17171977-17172481
chr17	CG	SV	18731878	18733360	32	.	.	ID=1812;Type=deletion;Left=chr17:18731878-18732328+;Right=chr17:18732903-18733360+;Distance=1025;DiscordantMatePairAlignments=32;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=NM_002767:+;RightGenes=NM_002767:+;XRef=rs67043860 (chr17:18731878-18732903);Frequency=0.94
chr17	CG	SV	18731878	18732328	32	+	.	ID=1812;Type=deletion;Left=chr17:18731878-18732328;Right=chr17:18732903-18733360
chr17	CG	SV	18732903	18733360	32	+	.	ID=1812;Type=deletion;Left=chr17:18731878-18732328;Right=chr17:18732903-18733360
chr17	CG	SV	21261870	21264043	166	.	.	ID=1810;Type=deletion;Left=chr17:21261870-21262450+;Right=chr17:21263414-21264043+;Distance=1544;DiscordantMatePairAlignments=166;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_021012:+;RightGenes=NM_021012:+;XRef=rs66470213 (chr17:21261871-21263414);Frequency=1.00
chr17	CG	SV	21261870	21262450	166	+	.	ID=1810;Type=deletion;Left=chr17:21261870-21262450;Right=chr17:21263414-21264043
chr17	CG	SV	21263414	21264043	166	+	.	ID=1810;Type=deletion;Left=chr17:21261870-21262450;Right=chr17:21263414-21264043
chr17	CG	SV	23804514	23808012	75	.	.	ID=1808;Type=deletion;Left=chr17:23804514-23805265+;Right=chr17:23807620-23808012+;Distance=3106;DiscordantMatePairAlignments=75;LeftRepeat=MER21B:LTR:ERV1;Self chain;RightRepeat=SVA:Other:Other;Self chain;Tandem period 40;LeftGenes=;RightGenes=;XRef=rs72148141 (chr17:23804512-23807618);Frequency=0.76
chr17	CG	SV	23804514	23805265	75	+	.	ID=1808;Type=deletion;Left=chr17:23804514-23805265;Right=chr17:23807620-23808012
chr17	CG	SV	23807620	23808012	75	+	.	ID=1808;Type=deletion;Left=chr17:23804514-23805265;Right=chr17:23807620-23808012
chr17	CG	SV	35631636	35632418	11	.	.	ID=1805;Type=deletion;Left=chr17:35631636-35632247+;Right=chr17:35632107-35632418+;Distance=471;DiscordantMatePairAlignments=11;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_133264:+;RightGenes=NM_133264:+;XRef=;Frequency=1.00
chr17	CG	SV	35631636	35632247	11	+	.	ID=1805;Type=deletion;Left=chr17:35631636-35632247;Right=chr17:35632107-35632418
chr17	CG	SV	35632107	35632418	11	+	.	ID=1805;Type=deletion;Left=chr17:35631636-35632247;Right=chr17:35632107-35632418
chr17	CG	SV	37065098	37344668	82	.	.	ID=742;Type=tandem-duplication;Left=chr17:37065098-37065806-;Right=chr17:37344361-37344668-;Distance=278862;DiscordantMatePairAlignments=82;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_031421:+;XRef=;Frequency=0.00
chr17	CG	SV	37065098	37065806	82	-	.	ID=742;Type=tandem-duplication;Left=chr17:37065098-37065806;Right=chr17:37344361-37344668
chr17	CG	SV	37344361	37344668	82	-	.	ID=742;Type=tandem-duplication;Left=chr17:37065098-37065806;Right=chr17:37344361-37344668
chr17	CG	SV	38736674	38819416	47	.	.	ID=61;Type=probable-inversion;Left=chr17:38736674-38737115-;Right=chr17:38819104-38819416+;Distance=81989;DiscordantMatePairAlignments=47;LeftRepeat=SegDup;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=NR_027412:-;NR_027413:-;XRef=;Frequency=1.00
chr17	CG	SV	38736674	38737115	47	-	.	ID=61;Type=probable-inversion;Left=chr17:38736674-38737115;Right=chr17:38819104-38819416
chr17	CG	SV	38819104	38819416	47	-	.	ID=61;Type=probable-inversion;Left=chr17:38736674-38737115;Right=chr17:38819104-38819416
chr17	CG	SV	38738252	38755692	25	.	.	ID=1804;Type=deletion;Left=chr17:38738252-38738888+;Right=chr17:38755376-38755692+;Distance=17124;DiscordantMatePairAlignments=25;LeftRepeat=AluSx:SINE:Alu;SegDup;Self chain;RightRepeat=AluSg:SINE:Alu;SegDup;Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr17	CG	SV	38738252	38738888	25	+	.	ID=1804;Type=deletion;Left=chr17:38738252-38738888;Right=chr17:38755376-38755692
chr17	CG	SV	38755376	38755692	25	+	.	ID=1804;Type=deletion;Left=chr17:38738252-38738888;Right=chr17:38755376-38755692
chr17	CG	SV	38739015	38821936	21	.	.	ID=1803;Type=deletion;Left=chr17:38739015-38739338+;Right=chr17:38821536-38821936+;Distance=82521;DiscordantMatePairAlignments=21;LeftRepeat=MIRb:SINE:MIR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NR_027412:-;NR_027413:-;XRef=;Frequency=0.82
chr17	CG	SV	38739015	38739338	21	+	.	ID=1803;Type=deletion;Left=chr17:38739015-38739338;Right=chr17:38821536-38821936
chr17	CG	SV	38821536	38821936	21	+	.	ID=1803;Type=deletion;Left=chr17:38739015-38739338;Right=chr17:38821536-38821936
chr17	CG	SV	38793625	38796261	51	.	.	ID=1802;Type=deletion;Left=chr17:38793625-38794151+;Right=chr17:38795844-38796261+;Distance=2219;DiscordantMatePairAlignments=51;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66799059 (chr17:38793491-38795710);Frequency=0.41
chr17	CG	SV	38793625	38794151	51	+	.	ID=1802;Type=deletion;Left=chr17:38793625-38794151;Right=chr17:38795844-38796261
chr17	CG	SV	38795844	38796261	51	+	.	ID=1802;Type=deletion;Left=chr17:38793625-38794151;Right=chr17:38795844-38796261
chr17	CG	SV	38872593	38874171	20	.	.	ID=1801;Type=deletion;Left=chr17:38872593-38873164+;Right=chr17:38873881-38874171+;Distance=1288;DiscordantMatePairAlignments=20;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr17	CG	SV	38872593	38873164	20	+	.	ID=1801;Type=deletion;Left=chr17:38872593-38873164;Right=chr17:38873881-38874171
chr17	CG	SV	38873881	38874171	20	+	.	ID=1801;Type=deletion;Left=chr17:38872593-38873164;Right=chr17:38873881-38874171
chr17	CG	SV	41643138	42530827	18	.	.	ID=741;Type=tandem-duplication;Left=chr17:41643138-41643642-;Right=chr17:42530743-42530827-;Distance=887185;DiscordantMatePairAlignments=18;LeftRepeat=AluSc:SINE:Alu;Self chain;Tandem A;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr17	CG	SV	41643138	41643642	18	-	.	ID=741;Type=tandem-duplication;Left=chr17:41643138-41643642;Right=chr17:42530743-42530827
chr17	CG	SV	42530743	42530827	18	-	.	ID=741;Type=tandem-duplication;Left=chr17:41643138-41643642;Right=chr17:42530743-42530827
chr17	CG	SV	42569727	42571258	335	.	.	ID=1799;Type=complex;Left=chr17:42569727-42570315+;Right=chr17:42571105-42571258+;Distance=1378;DiscordantMatePairAlignments=335;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42569727	42570315	335	+	.	ID=1799;Type=complex;Left=chr17:42569727-42570315;Right=chr17:42571105-42571258
chr17	CG	SV	42571105	42571258	335	+	.	ID=1799;Type=complex;Left=chr17:42569727-42570315;Right=chr17:42571105-42571258
chr17	CG	SV	42569727	42574765	391	.	.	ID=1798;Type=complex;Left=chr17:42569727-42570196+;Right=chr17:42574216-42574765+;Distance=4489;DiscordantMatePairAlignments=391;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42569727	42570196	391	+	.	ID=1798;Type=complex;Left=chr17:42569727-42570196;Right=chr17:42574216-42574765
chr17	CG	SV	42574216	42574765	391	+	.	ID=1798;Type=complex;Left=chr17:42569727-42570196;Right=chr17:42574216-42574765
chr17	CG	SV	42571256	42574802	46	.	.	ID=1795;Type=complex;Left=chr17:42571256-42571409+;Right=chr17:42574595-42574802+;Distance=3339;DiscordantMatePairAlignments=46;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42571256	42571409	46	+	.	ID=1795;Type=complex;Left=chr17:42571256-42571409;Right=chr17:42574595-42574802
chr17	CG	SV	42574595	42574802	46	+	.	ID=1795;Type=complex;Left=chr17:42571256-42571409;Right=chr17:42574595-42574802
chr17	CG	SV	42574391	42576349	28	.	.	ID=1793;Type=complex;Left=chr17:42574391-42574554+;Right=chr17:42576250-42576349+;Distance=1859;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42574391	42574554	28	+	.	ID=1793;Type=complex;Left=chr17:42574391-42574554;Right=chr17:42576250-42576349
chr17	CG	SV	42576250	42576349	28	+	.	ID=1793;Type=complex;Left=chr17:42574391-42574554;Right=chr17:42576250-42576349
chr17	CG	SV	42574803	42589398	79	.	.	ID=1790;Type=complex;Left=chr17:42574803-42575378+;Right=chr17:42589277-42589398+;Distance=14474;DiscordantMatePairAlignments=79;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42574803	42575378	79	+	.	ID=1790;Type=complex;Left=chr17:42574803-42575378;Right=chr17:42589277-42589398
chr17	CG	SV	42589277	42589398	79	+	.	ID=1790;Type=complex;Left=chr17:42574803-42575378;Right=chr17:42589277-42589398
chr17	CG	SV	42576345	42589636	242	.	.	ID=1789;Type=complex;Left=chr17:42576345-42576447+;Right=chr17:42589277-42589636+;Distance=12932;DiscordantMatePairAlignments=242;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42576345	42576447	242	+	.	ID=1789;Type=complex;Left=chr17:42576345-42576447;Right=chr17:42589277-42589636
chr17	CG	SV	42589277	42589636	242	+	.	ID=1789;Type=complex;Left=chr17:42576345-42576447;Right=chr17:42589277-42589636
chr17	CG	SV	42589489	42590670	147	.	.	ID=1786;Type=complex;Left=chr17:42589489-42589692+;Right=chr17:42590569-42590670+;Distance=1080;DiscordantMatePairAlignments=147;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42589489	42589692	147	+	.	ID=1786;Type=complex;Left=chr17:42589489-42589692;Right=chr17:42590569-42590670
chr17	CG	SV	42590569	42590670	147	+	.	ID=1786;Type=complex;Left=chr17:42589489-42589692;Right=chr17:42590569-42590670
chr17	CG	SV	42589747	42604387	64	.	.	ID=1784;Type=complex;Left=chr17:42589747-42590207+;Right=chr17:42604280-42604387+;Distance=14533;DiscordantMatePairAlignments=64;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42589747	42590207	64	+	.	ID=1784;Type=complex;Left=chr17:42589747-42590207;Right=chr17:42604280-42604387
chr17	CG	SV	42604280	42604387	64	+	.	ID=1784;Type=complex;Left=chr17:42589747-42590207;Right=chr17:42604280-42604387
chr17	CG	SV	42589747	42602408	54	.	.	ID=1785;Type=complex;Left=chr17:42589747-42590207+;Right=chr17:42602281-42602408+;Distance=12534;DiscordantMatePairAlignments=54;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42589747	42590207	54	+	.	ID=1785;Type=complex;Left=chr17:42589747-42590207;Right=chr17:42602281-42602408
chr17	CG	SV	42602281	42602408	54	+	.	ID=1785;Type=complex;Left=chr17:42589747-42590207;Right=chr17:42602281-42602408
chr17	CG	SV	42590669	42621655	135	.	.	ID=1780;Type=complex;Left=chr17:42590669-42590770+;Right=chr17:42621509-42621655+;Distance=30840;DiscordantMatePairAlignments=135;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42590669	42590770	135	+	.	ID=1780;Type=complex;Left=chr17:42590669-42590770;Right=chr17:42621509-42621655
chr17	CG	SV	42621509	42621655	135	+	.	ID=1780;Type=complex;Left=chr17:42590669-42590770;Right=chr17:42621509-42621655
chr17	CG	SV	44392249	44393279	72	.	.	ID=1775;Type=deletion;Left=chr17:44392249-44392726+;Right=chr17:44392849-44393279+;Distance=600;DiscordantMatePairAlignments=72;LeftRepeat=Self chain;Tandem period 40;RightRepeat=Self chain;Tandem period 40;LeftGenes=NM_004123:-;RightGenes=NM_004123:-;XRef=rs71886448 (chr17:44392094-44392694);Frequency=1.00
chr17	CG	SV	44392249	44392726	72	+	.	ID=1775;Type=deletion;Left=chr17:44392249-44392726;Right=chr17:44392849-44393279
chr17	CG	SV	44392849	44393279	72	+	.	ID=1775;Type=deletion;Left=chr17:44392249-44392726;Right=chr17:44392849-44393279
chr17	CG	SV	44706794	44708472	38	.	.	ID=1774;Type=deletion;Left=chr17:44706794-44707289+;Right=chr17:44708097-44708472+;Distance=1303;DiscordantMatePairAlignments=38;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr17	CG	SV	44706794	44707289	38	+	.	ID=1774;Type=deletion;Left=chr17:44706794-44707289;Right=chr17:44708097-44708472
chr17	CG	SV	44708097	44708472	38	+	.	ID=1774;Type=deletion;Left=chr17:44706794-44707289;Right=chr17:44708097-44708472
chr17	CG	SV	45782537	45783262	12	.	.	ID=1773;Type=deletion;Left=chr17:45782537-45783107+;Right=chr17:45782921-45783262+;Distance=384;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_022167:+;RightGenes=NM_022167:+;XRef=rs71967066 (chr17:45782410-45782794);Frequency=0.47
chr17	CG	SV	45782537	45783107	12	+	.	ID=1773;Type=deletion;Left=chr17:45782537-45783107;Right=chr17:45782921-45783262
chr17	CG	SV	45782921	45783262	12	+	.	ID=1773;Type=deletion;Left=chr17:45782537-45783107;Right=chr17:45782921-45783262
chr17	CG	SV	46220485	46415520	40	.	.	ID=740;Type=tandem-duplication;Left=chr17:46220485-46221059-;Right=chr17:46415029-46415520-;Distance=194461;DiscordantMatePairAlignments=40;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=NM_001130528:-;NM_003971:-;XRef=;Frequency=0.00
chr17	CG	SV	46220485	46221059	40	-	.	ID=740;Type=tandem-duplication;Left=chr17:46220485-46221059;Right=chr17:46415029-46415520
chr17	CG	SV	46415029	46415520	40	-	.	ID=740;Type=tandem-duplication;Left=chr17:46220485-46221059;Right=chr17:46415029-46415520
chr17	CG	SV	53042810	53045113	10	.	.	ID=1771;Type=deletion;Left=chr17:53042810-53043354+;Right=chr17:53044915-53045113+;Distance=2105;DiscordantMatePairAlignments=10;LeftRepeat=AluSg:SINE:Alu;RightRepeat=;LeftGenes=NM_138962:+;NM_170721:+;RightGenes=NM_138962:+;NM_170721:+;XRef=;Frequency=0.88
chr17	CG	SV	53042810	53043354	10	+	.	ID=1771;Type=deletion;Left=chr17:53042810-53043354;Right=chr17:53044915-53045113
chr17	CG	SV	53044915	53045113	10	+	.	ID=1771;Type=deletion;Left=chr17:53042810-53043354;Right=chr17:53044915-53045113
chr17	CG	SV	55235541	55386414	17	.	.	ID=739;Type=tandem-duplication;Left=chr17:55235541-55236003-;Right=chr17:55385957-55386414-;Distance=150411;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_030938:+;RightGenes=NM_016125:-;XRef=;Frequency=0.00
chr17	CG	SV	55235541	55236003	17	-	.	ID=739;Type=tandem-duplication;Left=chr17:55235541-55236003;Right=chr17:55385957-55386414
chr17	CG	SV	55385957	55386414	17	-	.	ID=739;Type=tandem-duplication;Left=chr17:55235541-55236003;Right=chr17:55385957-55386414
chr17	CG	SV	65468893	65469678	146	.	.	ID=737;Type=tandem-duplication;Left=chr17:65468893-65469279-;Right=chr17:65469254-65469678-;Distance=399;DiscordantMatePairAlignments=146;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr17	CG	SV	65468893	65469279	146	-	.	ID=737;Type=tandem-duplication;Left=chr17:65468893-65469279;Right=chr17:65469254-65469678
chr17	CG	SV	65469254	65469678	146	-	.	ID=737;Type=tandem-duplication;Left=chr17:65468893-65469279;Right=chr17:65469254-65469678
chr17	CG	SV	73793875	73795312	11	.	.	ID=1758;Type=deletion;Left=chr17:73793875-73794135+;Right=chr17:73795069-73795312+;Distance=1194;DiscordantMatePairAlignments=11;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr17	CG	SV	73793875	73794135	11	+	.	ID=1758;Type=deletion;Left=chr17:73793875-73794135;Right=chr17:73795069-73795312
chr17	CG	SV	73795069	73795312	11	+	.	ID=1758;Type=deletion;Left=chr17:73793875-73794135;Right=chr17:73795069-73795312
chr17	CG	SV	76076479	76078836	33	.	.	ID=1757;Type=deletion;Left=chr17:76076479-76077020+;Right=chr17:76078431-76078836+;Distance=1952;DiscordantMatePairAlignments=33;LeftRepeat=G-rich:Low_complexity:Low_complexity;Tandem period 18;Tandem period 36;RightRepeat=G-rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=0.25
chr17	CG	SV	76076479	76077020	33	+	.	ID=1757;Type=deletion;Left=chr17:76076479-76077020;Right=chr17:76078431-76078836
chr17	CG	SV	76078431	76078836	33	+	.	ID=1757;Type=deletion;Left=chr17:76076479-76077020;Right=chr17:76078431-76078836
chr17	CG	SV	77085099	77086345	13	.	.	ID=1756;Type=deletion;Left=chr17:77085099-77085543+;Right=chr17:77086086-77086345+;Distance=987;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72252307 (chr17:77085099-77086086);Frequency=0.88
chr17	CG	SV	77085099	77085543	13	+	.	ID=1756;Type=deletion;Left=chr17:77085099-77085543;Right=chr17:77086086-77086345
chr17	CG	SV	77086086	77086345	13	+	.	ID=1756;Type=deletion;Left=chr17:77085099-77085543;Right=chr17:77086086-77086345
chr17	CG	SV	78653184	78654731	84	.	.	ID=1755;Type=deletion;Left=chr17:78653184-78653809+;Right=chr17:78654274-78654731+;Distance=1090;DiscordantMatePairAlignments=84;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72246678 (chr17:78653184-78654274);Frequency=0.59
chr17	CG	SV	78653184	78653809	84	+	.	ID=1755;Type=deletion;Left=chr17:78653184-78653809;Right=chr17:78654274-78654731
chr17	CG	SV	78654274	78654731	84	+	.	ID=1755;Type=deletion;Left=chr17:78653184-78653809;Right=chr17:78654274-78654731
chr18	CG	SV	5314645	5316761	24	.	.	ID=1732;Type=deletion;Left=chr18:5314645-5315149+;Right=chr18:5316244-5316761+;Distance=1599;DiscordantMatePairAlignments=24;LeftRepeat=;RightRepeat=L1PA11:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71657028 (chr18:5314645-5316244);Frequency=0.94
chr18	CG	SV	5314645	5315149	24	+	.	ID=1732;Type=deletion;Left=chr18:5314645-5315149;Right=chr18:5316244-5316761
chr18	CG	SV	5316244	5316761	24	+	.	ID=1732;Type=deletion;Left=chr18:5314645-5315149;Right=chr18:5316244-5316761
chr18	CG	SV	20244740	20246373	175	.	.	ID=1723;Type=deletion;Left=chr18:20244740-20245312+;Right=chr18:20246045-20246373+;Distance=1305;DiscordantMatePairAlignments=175;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr18	CG	SV	20244740	20245312	175	+	.	ID=1723;Type=deletion;Left=chr18:20244740-20245312;Right=chr18:20246045-20246373
chr18	CG	SV	20246045	20246373	175	+	.	ID=1723;Type=deletion;Left=chr18:20244740-20245312;Right=chr18:20246045-20246373
chr18	CG	SV	22001811	22005725	14	.	.	ID=1722;Type=deletion;Left=chr18:22001811-22002353+;Right=chr18:22005328-22005725+;Distance=3517;DiscordantMatePairAlignments=14;LeftRepeat=MLT1B:LTR:MaLR;Self chain;RightRepeat=Self chain;LeftGenes=NM_001025096:+;NM_001025097:+;NM_144662:+;RightGenes=NM_001025096:+;NM_001025097:+;NM_144662:+;XRef=rs71170272 (chr18:22001811-22005328);Frequency=0.12
chr18	CG	SV	22001811	22002353	14	+	.	ID=1722;Type=deletion;Left=chr18:22001811-22002353;Right=chr18:22005328-22005725
chr18	CG	SV	22005328	22005725	14	+	.	ID=1722;Type=deletion;Left=chr18:22001811-22002353;Right=chr18:22005328-22005725
chr18	CG	SV	30915970	30916682	10	.	.	ID=1721;Type=deletion;Left=chr18:30915970-30916591+;Right=chr18:30916287-30916682+;Distance=317;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001143826:+;NM_001143827:+;NM_014268:+;NR_026570:+;RightGenes=NM_001143826:+;NM_001143827:+;NM_014268:+;NR_026570:+;XRef=;Frequency=0.47
chr18	CG	SV	30915970	30916591	10	+	.	ID=1721;Type=deletion;Left=chr18:30915970-30916591;Right=chr18:30916287-30916682
chr18	CG	SV	30916287	30916682	10	+	.	ID=1721;Type=deletion;Left=chr18:30915970-30916591;Right=chr18:30916287-30916682
chr18	CG	SV	31924384	31927552	33	.	.	ID=1720;Type=deletion;Left=chr18:31924384-31924697+;Right=chr18:31927139-31927552+;Distance=2755;DiscordantMatePairAlignments=33;LeftRepeat=AluSx:SINE:Alu;RightRepeat=MER90a:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	31924384	31924697	33	+	.	ID=1720;Type=deletion;Left=chr18:31924384-31924697;Right=chr18:31927139-31927552
chr18	CG	SV	31927139	31927552	33	+	.	ID=1720;Type=deletion;Left=chr18:31924384-31924697;Right=chr18:31927139-31927552
chr18	CG	SV	33560058	33561240	89	.	.	ID=1719;Type=deletion;Left=chr18:33560058-33560640+;Right=chr18:33560630-33561240+;Distance=572;DiscordantMatePairAlignments=89;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68016188 (chr18:33560058-33560620);Frequency=0.71
chr18	CG	SV	33560058	33560640	89	+	.	ID=1719;Type=deletion;Left=chr18:33560058-33560640;Right=chr18:33560630-33561240
chr18	CG	SV	33560630	33561240	89	+	.	ID=1719;Type=deletion;Left=chr18:33560058-33560640;Right=chr18:33560630-33561240
chr18	CG	SV	39285547	39287134	63	.	.	ID=1715;Type=deletion;Left=chr18:39285547-39286179+;Right=chr18:39286531-39287134+;Distance=984;DiscordantMatePairAlignments=63;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72163979 (chr18:39285542-39286526);Frequency=0.88
chr18	CG	SV	39285547	39286179	63	+	.	ID=1715;Type=deletion;Left=chr18:39285547-39286179;Right=chr18:39286531-39287134
chr18	CG	SV	39286531	39287134	63	+	.	ID=1715;Type=deletion;Left=chr18:39285547-39286179;Right=chr18:39286531-39287134
chr18	CG	SV	45273866	45274526	11	.	.	ID=1712;Type=deletion;Left=chr18:45273866-45274468+;Right=chr18:45274188-45274526+;Distance=322;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr18	CG	SV	45273866	45274468	11	+	.	ID=1712;Type=deletion;Left=chr18:45273866-45274468;Right=chr18:45274188-45274526
chr18	CG	SV	45274188	45274526	11	+	.	ID=1712;Type=deletion;Left=chr18:45273866-45274468;Right=chr18:45274188-45274526
chr18	CG	SV	48716565	48717505	16	.	.	ID=1711;Type=deletion;Left=chr18:48716565-48717025+;Right=chr18:48717030-48717505+;Distance=465;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=;LeftGenes=NM_005215:+;RightGenes=NM_005215:+;XRef=rs72465148 (chr18:48716563-48717028);Frequency=0.53
chr18	CG	SV	48716565	48717025	16	+	.	ID=1711;Type=deletion;Left=chr18:48716565-48717025;Right=chr18:48717030-48717505
chr18	CG	SV	48717030	48717505	16	+	.	ID=1711;Type=deletion;Left=chr18:48716565-48717025;Right=chr18:48717030-48717505
chr18	CG	SV	49390403	49392250	61	.	.	ID=1708;Type=deletion;Left=chr18:49390403-49390885+;Right=chr18:49391772-49392250+;Distance=1369;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr18	CG	SV	49390403	49390885	61	+	.	ID=1708;Type=deletion;Left=chr18:49390403-49390885;Right=chr18:49391772-49392250
chr18	CG	SV	49391772	49392250	61	+	.	ID=1708;Type=deletion;Left=chr18:49390403-49390885;Right=chr18:49391772-49392250
chr18	CG	SV	49459967	49464982	88	.	.	ID=1707;Type=deletion;Left=chr18:49459967-49460490+;Right=chr18:49464572-49464982+;Distance=4605;DiscordantMatePairAlignments=88;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr18	CG	SV	49459967	49460490	88	+	.	ID=1707;Type=deletion;Left=chr18:49459967-49460490;Right=chr18:49464572-49464982
chr18	CG	SV	49464572	49464982	88	+	.	ID=1707;Type=deletion;Left=chr18:49459967-49460490;Right=chr18:49464572-49464982
chr18	CG	SV	50206966	50211465	114	.	.	ID=1706;Type=deletion;Left=chr18:50206966-50207447+;Right=chr18:50210962-50211465+;Distance=3996;DiscordantMatePairAlignments=114;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67019264 (chr18:50206966-50210962);Frequency=0.94
chr18	CG	SV	50206966	50207447	114	+	.	ID=1706;Type=deletion;Left=chr18:50206966-50207447;Right=chr18:50210962-50211465
chr18	CG	SV	50210962	50211465	114	+	.	ID=1706;Type=deletion;Left=chr18:50206966-50207447;Right=chr18:50210962-50211465
chr18	CG	SV	53097735	53100326	197	.	.	ID=1705;Type=deletion;Left=chr18:53097735-53098275+;Right=chr18:53099715-53100326+;Distance=1980;DiscordantMatePairAlignments=197;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66803181 (chr18:53097735-53099715);Frequency=1.00
chr18	CG	SV	53097735	53098275	197	+	.	ID=1705;Type=deletion;Left=chr18:53097735-53098275;Right=chr18:53099715-53100326
chr18	CG	SV	53099715	53100326	197	+	.	ID=1705;Type=deletion;Left=chr18:53097735-53098275;Right=chr18:53099715-53100326
chr18	CG	SV	53328446	53329329	26	.	.	ID=1704;Type=deletion;Left=chr18:53328446-53328985+;Right=chr18:53329075-53329329+;Distance=629;DiscordantMatePairAlignments=26;LeftRepeat=AluSp:SINE:Alu;Tandem period 313;RightRepeat=AluSq:SINE:Alu;Tandem period 313;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr18	CG	SV	53328446	53328985	26	+	.	ID=1704;Type=deletion;Left=chr18:53328446-53328985;Right=chr18:53329075-53329329
chr18	CG	SV	53329075	53329329	26	+	.	ID=1704;Type=deletion;Left=chr18:53328446-53328985;Right=chr18:53329075-53329329
chr18	CG	SV	53340479	53511875	19	.	.	ID=681;Type=tandem-duplication;Left=chr18:53340479-53340890-;Right=chr18:53511375-53511875-;Distance=170985;DiscordantMatePairAlignments=19;LeftRepeat=MLT1J2:LTR:MaLR;SegDup;Self chain;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=NM_005603:-;XRef=;Frequency=0.00
chr18	CG	SV	53340479	53340890	19	-	.	ID=681;Type=tandem-duplication;Left=chr18:53340479-53340890;Right=chr18:53511375-53511875
chr18	CG	SV	53511375	53511875	19	-	.	ID=681;Type=tandem-duplication;Left=chr18:53340479-53340890;Right=chr18:53511375-53511875
chr18	CG	SV	57823761	57825619	17	.	.	ID=1703;Type=deletion;Left=chr18:57823761-57824237+;Right=chr18:57825220-57825619+;Distance=1459;DiscordantMatePairAlignments=17;LeftRepeat=THE1A:LTR:MaLR;RightRepeat=THE1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr18	CG	SV	57823761	57824237	17	+	.	ID=1703;Type=deletion;Left=chr18:57823761-57824237;Right=chr18:57825220-57825619
chr18	CG	SV	57825220	57825619	17	+	.	ID=1703;Type=deletion;Left=chr18:57823761-57824237;Right=chr18:57825220-57825619
chr18	CG	SV	59036707	59037037	10	.	.	ID=678;Type=tandem-duplication;Left=chr18:59036707-59036814-;Right=chr18:59036822-59037037-;Distance=223;DiscordantMatePairAlignments=10;LeftRepeat=(TCCA)n:Simple_repeat:Simple_repeat;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;LeftGenes=NM_000633:-;RightGenes=NM_000633:-;XRef=;Frequency=1.00
chr18	CG	SV	59036707	59036814	10	-	.	ID=678;Type=tandem-duplication;Left=chr18:59036707-59036814;Right=chr18:59036822-59037037
chr18	CG	SV	59036822	59037037	10	-	.	ID=678;Type=tandem-duplication;Left=chr18:59036707-59036814;Right=chr18:59036822-59037037
chr18	CG	SV	66997721	66998610	12	.	.	ID=1693;Type=deletion;Left=chr18:66997721-66998279+;Right=chr18:66998055-66998610+;Distance=334;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10705382 (chr18:66997721-66998055);Frequency=0.88
chr18	CG	SV	66997721	66998279	12	+	.	ID=1693;Type=deletion;Left=chr18:66997721-66998279;Right=chr18:66998055-66998610
chr18	CG	SV	66998055	66998610	12	+	.	ID=1693;Type=deletion;Left=chr18:66997721-66998279;Right=chr18:66998055-66998610
chr18	CG	SV	69153643	69155430	17	.	.	ID=1692;Type=deletion;Left=chr18:69153643-69154121+;Right=chr18:69155235-69155430+;Distance=1592;DiscordantMatePairAlignments=17;LeftRepeat=AluY:SINE:Alu;Tandem A;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	69153643	69154121	17	+	.	ID=1692;Type=deletion;Left=chr18:69153643-69154121;Right=chr18:69155235-69155430
chr18	CG	SV	69155235	69155430	17	+	.	ID=1692;Type=deletion;Left=chr18:69153643-69154121;Right=chr18:69155235-69155430
chr18	CG	SV	72476184	72477561	147	.	.	ID=1689;Type=deletion;Left=chr18:72476184-72476761+;Right=chr18:72476985-72477561+;Distance=801;DiscordantMatePairAlignments=147;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr18	CG	SV	72476184	72476761	147	+	.	ID=1689;Type=deletion;Left=chr18:72476184-72476761;Right=chr18:72476985-72477561
chr18	CG	SV	72476985	72477561	147	+	.	ID=1689;Type=deletion;Left=chr18:72476184-72476761;Right=chr18:72476985-72477561
chr18	CG	SV	73395986	73397761	67	.	.	ID=1687;Type=deletion;Left=chr18:73395986-73396483+;Right=chr18:73397148-73397761+;Distance=1162;DiscordantMatePairAlignments=67;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66626305 (chr18:73395985-73397147);Frequency=0.82
chr18	CG	SV	73395986	73396483	67	+	.	ID=1687;Type=deletion;Left=chr18:73395986-73396483;Right=chr18:73397148-73397761
chr18	CG	SV	73397148	73397761	67	+	.	ID=1687;Type=deletion;Left=chr18:73395986-73396483;Right=chr18:73397148-73397761
chr18	CG	SV	74763429	74767737	53	.	.	ID=1685;Type=deletion;Left=chr18:74763429-74763986+;Right=chr18:74767312-74767737+;Distance=3883;DiscordantMatePairAlignments=53;LeftRepeat=Self chain;Tandem period 48;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72010801 (chr18:74763476-74767311);Frequency=0.29
chr18	CG	SV	74763429	74763986	53	+	.	ID=1685;Type=deletion;Left=chr18:74763429-74763986;Right=chr18:74767312-74767737
chr18	CG	SV	74767312	74767737	53	+	.	ID=1685;Type=deletion;Left=chr18:74763429-74763986;Right=chr18:74767312-74767737
chr18	CG	SV	75061600	75061767	289	.	.	ID=677;Type=tandem-duplication;Left=chr18:75061600-75061690-;Right=chr18:75061662-75061767-;Distance=77;DiscordantMatePairAlignments=289;LeftRepeat=Self chain;Tandem period 33;RightRepeat=G-rich:Low_complexity:Low_complexity;Self chain;LeftGenes=NM_198531:+;RightGenes=NM_198531:+;XRef=;Frequency=1.00
chr18	CG	SV	75061600	75061690	289	-	.	ID=677;Type=tandem-duplication;Left=chr18:75061600-75061690;Right=chr18:75061662-75061767
chr18	CG	SV	75061662	75061767	289	-	.	ID=677;Type=tandem-duplication;Left=chr18:75061600-75061690;Right=chr18:75061662-75061767
chr18	CG	SV	75410938	75413623	172	.	.	ID=1684;Type=deletion;Left=chr18:75410938-75411536+;Right=chr18:75413079-75413623+;Distance=2141;DiscordantMatePairAlignments=172;LeftRepeat=Self chain;Tandem period 54;RightRepeat=Self chain;Tandem period 54;LeftGenes=;RightGenes=;XRef=rs71172180 (chr18:75410938-75413079);Frequency=0.59
chr18	CG	SV	75410938	75411536	172	+	.	ID=1684;Type=deletion;Left=chr18:75410938-75411536;Right=chr18:75413079-75413623
chr18	CG	SV	75413079	75413623	172	+	.	ID=1684;Type=deletion;Left=chr18:75410938-75411536;Right=chr18:75413079-75413623
chr19	CG	SV	966492	966995	18	.	.	ID=675;Type=tandem-duplication;Left=chr19:966492-966732-;Right=chr19:966791-966995-;Distance=263;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001033026:-;NM_033420:-;RightGenes=NM_001033026:-;NM_033420:-;XRef=;Frequency=0.06
chr19	CG	SV	966492	966732	18	-	.	ID=675;Type=tandem-duplication;Left=chr19:966492-966732;Right=chr19:966791-966995
chr19	CG	SV	966791	966995	18	-	.	ID=675;Type=tandem-duplication;Left=chr19:966492-966732;Right=chr19:966791-966995
chr19	CG	SV	1092836	1093274	14	.	.	ID=674;Type=tandem-duplication;Left=chr19:1092836-1093020-;Right=chr19:1093114-1093274-;Distance=254;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 30;RightRepeat=Self chain;LeftGenes=NM_014963:-;RightGenes=NM_014963:-;XRef=;Frequency=1.00
chr19	CG	SV	1092836	1093020	14	-	.	ID=674;Type=tandem-duplication;Left=chr19:1092836-1093020;Right=chr19:1093114-1093274
chr19	CG	SV	1093114	1093274	14	-	.	ID=674;Type=tandem-duplication;Left=chr19:1092836-1093020;Right=chr19:1093114-1093274
chr19	CG	SV	2058518	2200476	53	.	.	ID=673;Type=tandem-duplication;Left=chr19:2058518-2058995-;Right=chr19:2199882-2200476-;Distance=141481;DiscordantMatePairAlignments=53;LeftRepeat=L1MD:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_001077523:-;NM_003938:-;RightGenes=NM_000479:+;XRef=;Frequency=0.00
chr19	CG	SV	2058518	2058995	53	-	.	ID=673;Type=tandem-duplication;Left=chr19:2058518-2058995;Right=chr19:2199882-2200476
chr19	CG	SV	2199882	2200476	53	-	.	ID=673;Type=tandem-duplication;Left=chr19:2058518-2058995;Right=chr19:2199882-2200476
chr19	CG	SV	4569623	4571262	94	.	.	ID=1682;Type=deletion;Left=chr19:4569623-4570114+;Right=chr19:4570607-4571262+;Distance=984;DiscordantMatePairAlignments=94;LeftRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 17;RightRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 17;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr19	CG	SV	4569623	4570114	94	+	.	ID=1682;Type=deletion;Left=chr19:4569623-4570114;Right=chr19:4570607-4571262
chr19	CG	SV	4570607	4571262	94	+	.	ID=1682;Type=deletion;Left=chr19:4569623-4570114;Right=chr19:4570607-4571262
chr19	CG	SV	7209364	7210867	36	.	.	ID=1681;Type=deletion;Left=chr19:7209364-7209944+;Right=chr19:7210294-7210867+;Distance=930;DiscordantMatePairAlignments=36;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=NM_000208:-;NM_001079817:-;RightGenes=NM_000208:-;NM_001079817:-;XRef=;Frequency=0.12
chr19	CG	SV	7209364	7209944	36	+	.	ID=1681;Type=deletion;Left=chr19:7209364-7209944;Right=chr19:7210294-7210867
chr19	CG	SV	7210294	7210867	36	+	.	ID=1681;Type=deletion;Left=chr19:7209364-7209944;Right=chr19:7210294-7210867
chr19	CG	SV	8420425	8421305	13	.	.	ID=1679;Type=deletion;Left=chr19:8420425-8420892+;Right=chr19:8420732-8421305+;Distance=307;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_005968:+;NM_031203:+;RightGenes=NM_005968:+;NM_031203:+;XRef=rs71166204 (chr19:8420425-8420732);Frequency=1.00
chr19	CG	SV	8420425	8420892	13	+	.	ID=1679;Type=deletion;Left=chr19:8420425-8420892;Right=chr19:8420732-8421305
chr19	CG	SV	8420732	8421305	13	+	.	ID=1679;Type=deletion;Left=chr19:8420425-8420892;Right=chr19:8420732-8421305
chr19	CG	SV	14907392	14911047	60	.	.	ID=1678;Type=deletion;Left=chr19:14907392-14907834+;Right=chr19:14910478-14911047+;Distance=3086;DiscordantMatePairAlignments=60;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr19	CG	SV	14907392	14907834	60	+	.	ID=1678;Type=deletion;Left=chr19:14907392-14907834;Right=chr19:14910478-14911047
chr19	CG	SV	14910478	14911047	60	+	.	ID=1678;Type=deletion;Left=chr19:14907392-14907834;Right=chr19:14910478-14911047
chr19	CG	SV	17303083	17311547	24	.	.	ID=669;Type=tandem-duplication;Left=chr19:17303083-17303743-;Right=chr19:17311367-17311547-;Distance=7804;DiscordantMatePairAlignments=24;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_020959:-;RightGenes=NM_001128855:+;NM_032620:+;NM_133644:+;XRef=;Frequency=0.00
chr19	CG	SV	17303083	17303743	24	-	.	ID=669;Type=tandem-duplication;Left=chr19:17303083-17303743;Right=chr19:17311367-17311547
chr19	CG	SV	17311367	17311547	24	-	.	ID=669;Type=tandem-duplication;Left=chr19:17303083-17303743;Right=chr19:17311367-17311547
chr19	CG	SV	18851156	19064661	121	.	.	ID=668;Type=tandem-duplication;Left=chr19:18851156-18851627-;Right=chr19:19064023-19064661-;Distance=213034;DiscordantMatePairAlignments=121;LeftRepeat=Self chain;Tandem period 63;RightRepeat=Self chain;LeftGenes=NM_001492:-;NM_021267:-;NM_198207:-;RightGenes=NM_178526:+;XRef=;Frequency=0.00
chr19	CG	SV	18851156	18851627	121	-	.	ID=668;Type=tandem-duplication;Left=chr19:18851156-18851627;Right=chr19:19064023-19064661
chr19	CG	SV	19064023	19064661	121	-	.	ID=668;Type=tandem-duplication;Left=chr19:18851156-18851627;Right=chr19:19064023-19064661
chr19	CG	SV	18873916	18877584	14	.	.	ID=1676;Type=deletion;Left=chr19:18873916-18874389+;Right=chr19:18877332-18877584+;Distance=3416;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;Tandem period 15;LeftGenes=NM_007263:-;NM_199442:-;NM_199444:-;RightGenes=NM_007263:-;NM_199442:-;NM_199444:-;XRef=;Frequency=0.00
chr19	CG	SV	18873916	18874389	14	+	.	ID=1676;Type=deletion;Left=chr19:18873916-18874389;Right=chr19:18877332-18877584
chr19	CG	SV	18877332	18877584	14	+	.	ID=1676;Type=deletion;Left=chr19:18873916-18874389;Right=chr19:18877332-18877584
chr19	CG	SV	20377009	20380347	14	.	.	ID=1675;Type=deletion;Left=chr19:20377009-20377634+;Right=chr19:20379861-20380347+;Distance=2852;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=L1MB2:LINE:L1;Self chain;LeftGenes=NM_001039884:-;RightGenes=NM_001039884:-;XRef=rs72102339 (chr19:20377009-20379861);Frequency=0.88
chr19	CG	SV	20377009	20377634	14	+	.	ID=1675;Type=deletion;Left=chr19:20377009-20377634;Right=chr19:20379861-20380347
chr19	CG	SV	20379861	20380347	14	+	.	ID=1675;Type=deletion;Left=chr19:20377009-20377634;Right=chr19:20379861-20380347
chr19	CG	SV	21542570	21544021	29	.	.	ID=1674;Type=deletion;Left=chr19:21542570-21542882+;Right=chr19:21543553-21544021+;Distance=983;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr19	CG	SV	21542570	21542882	29	+	.	ID=1674;Type=deletion;Left=chr19:21542570-21542882;Right=chr19:21543553-21544021
chr19	CG	SV	21543553	21544021	29	+	.	ID=1674;Type=deletion;Left=chr19:21542570-21542882;Right=chr19:21543553-21544021
chr19	CG	SV	34642028	34648536	97	.	.	ID=1654;Type=deletion;Left=chr19:34642028-34642631+;Right=chr19:34648011-34648536+;Distance=5983;DiscordantMatePairAlignments=97;LeftRepeat=HAL1b:LINE:L1;Self chain;RightRepeat=HAL1b:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs72413604 (chr19:34642037-34648020);Frequency=0.59
chr19	CG	SV	34642028	34642631	97	+	.	ID=1654;Type=deletion;Left=chr19:34642028-34642631;Right=chr19:34648011-34648536
chr19	CG	SV	34648011	34648536	97	+	.	ID=1654;Type=deletion;Left=chr19:34642028-34642631;Right=chr19:34648011-34648536
chr19	CG	SV	35080655	35085458	51	.	.	ID=1653;Type=deletion;Left=chr19:35080655-35081228+;Right=chr19:35084966-35085458+;Distance=4311;DiscordantMatePairAlignments=51;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem ATTTTT;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	35080655	35081228	51	+	.	ID=1653;Type=deletion;Left=chr19:35080655-35081228;Right=chr19:35084966-35085458
chr19	CG	SV	35084966	35085458	51	+	.	ID=1653;Type=deletion;Left=chr19:35080655-35081228;Right=chr19:35084966-35085458
chr19	CG	SV	35979345	35981874	23	.	.	ID=1652;Type=deletion;Left=chr19:35979345-35979920+;Right=chr19:35981618-35981874+;Distance=2273;DiscordantMatePairAlignments=23;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs66944303 (chr19:35979085-35981358);Frequency=0.94
chr19	CG	SV	35979345	35979920	23	+	.	ID=1652;Type=deletion;Left=chr19:35979345-35979920;Right=chr19:35981618-35981874
chr19	CG	SV	35981618	35981874	23	+	.	ID=1652;Type=deletion;Left=chr19:35979345-35979920;Right=chr19:35981618-35981874
chr19	CG	SV	36444443	36758282	35	.	.	ID=640;Type=tandem-duplication;Left=chr19:36444443-36444847-;Right=chr19:36757930-36758282-;Distance=313435;DiscordantMatePairAlignments=35;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	36444443	36444847	35	-	.	ID=640;Type=tandem-duplication;Left=chr19:36444443-36444847;Right=chr19:36757930-36758282
chr19	CG	SV	36757930	36758282	35	-	.	ID=640;Type=tandem-duplication;Left=chr19:36444443-36444847;Right=chr19:36757930-36758282
chr19	CG	SV	37778432	37779241	31	.	.	ID=639;Type=tandem-duplication;Left=chr19:37778432-37778751-;Right=chr19:37778881-37779241-;Distance=490;DiscordantMatePairAlignments=31;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr19	CG	SV	37778432	37778751	31	-	.	ID=639;Type=tandem-duplication;Left=chr19:37778432-37778751;Right=chr19:37778881-37779241
chr19	CG	SV	37778881	37779241	31	-	.	ID=639;Type=tandem-duplication;Left=chr19:37778432-37778751;Right=chr19:37778881-37779241
chr19	CG	SV	48220365	48548654	32	.	.	ID=637;Type=tandem-duplication;Left=chr19:48220365-48220955-;Right=chr19:48548248-48548654-;Distance=327699;DiscordantMatePairAlignments=32;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=NM_001113410:-;NM_002785:-;NM_203287:-;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	48220365	48220955	32	-	.	ID=637;Type=tandem-duplication;Left=chr19:48220365-48220955;Right=chr19:48548248-48548654
chr19	CG	SV	48548248	48548654	32	-	.	ID=637;Type=tandem-duplication;Left=chr19:48220365-48220955;Right=chr19:48548248-48548654
chr19	CG	SV	48874703	48875794	54	.	.	ID=636;Type=tandem-duplication;Left=chr19:48874703-48875206-;Right=chr19:48875504-48875794-;Distance=588;DiscordantMatePairAlignments=54;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	48874703	48875206	54	-	.	ID=636;Type=tandem-duplication;Left=chr19:48874703-48875206;Right=chr19:48875504-48875794
chr19	CG	SV	48875504	48875794	54	-	.	ID=636;Type=tandem-duplication;Left=chr19:48874703-48875206;Right=chr19:48875504-48875794
chr19	CG	SV	52115277	52115514	25	-	.	ID=587;Type=interchromosomal;Left=chr19:52115277-52115514-;Right=chrX:133781007-133781474-;Distance=;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_004491:+;RightGenes=NM_138819:+;XRef=;Frequency=0.00
chrX	CG	SV	133781007	133781474	25	-	.	ID=587;Type=interchromosomal;Left=chr19:52115277-52115514-;Right=chrX:133781007-133781474-;Distance=;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_004491:+;RightGenes=NM_138819:+;XRef=;Frequency=0.00
chr19	CG	SV	57787833	57790081	10	.	.	ID=1648;Type=deletion;Left=chr19:57787833-57788251+;Right=chr19:57789435-57790081+;Distance=1602;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72196700 (chr19:57787818-57789420);Frequency=0.47
chr19	CG	SV	57787833	57788251	10	+	.	ID=1648;Type=deletion;Left=chr19:57787833-57788251;Right=chr19:57789435-57790081
chr19	CG	SV	57789435	57790081	10	+	.	ID=1648;Type=deletion;Left=chr19:57787833-57788251;Right=chr19:57789435-57790081
chr19	CG	SV	58114012	58116255	22	.	.	ID=1647;Type=deletion;Left=chr19:58114012-58114477+;Right=chr19:58116022-58116255+;Distance=2010;DiscordantMatePairAlignments=22;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr19	CG	SV	58114012	58114477	22	+	.	ID=1647;Type=deletion;Left=chr19:58114012-58114477;Right=chr19:58116022-58116255
chr19	CG	SV	58116022	58116255	22	+	.	ID=1647;Type=deletion;Left=chr19:58114012-58114477;Right=chr19:58116022-58116255
chr19	CG	SV	58380998	58384273	56	.	.	ID=1646;Type=deletion;Left=chr19:58380998-58381308+;Right=chr19:58383780-58384273+;Distance=2782;DiscordantMatePairAlignments=56;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;Tandem T;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_024733:-;RightGenes=NM_024733:-;XRef=;Frequency=1.00
chr19	CG	SV	58380998	58381308	56	+	.	ID=1646;Type=deletion;Left=chr19:58380998-58381308;Right=chr19:58383780-58384273
chr19	CG	SV	58383780	58384273	56	+	.	ID=1646;Type=deletion;Left=chr19:58380998-58381308;Right=chr19:58383780-58384273
chr19	CG	SV	60296572	60297917	19	.	.	ID=1645;Type=deletion;Left=chr19:60296572-60296955+;Right=chr19:60297515-60297917+;Distance=943;DiscordantMatePairAlignments=19;LeftRepeat=MSR1:Satellite:Satellite;Self chain;Tandem period 109;Tandem period 36;Tandem period 73;RightRepeat=Self chain;LeftGenes=NM_017607:-;RightGenes=NM_017607:-;XRef=;Frequency=0.82
chr19	CG	SV	60296572	60296955	19	+	.	ID=1645;Type=deletion;Left=chr19:60296572-60296955;Right=chr19:60297515-60297917
chr19	CG	SV	60297515	60297917	19	+	.	ID=1645;Type=deletion;Left=chr19:60296572-60296955;Right=chr19:60297515-60297917
chr19	CG	SV	60605633	60606067	37	-	.	ID=29;Type=complex;Left=chr19:60605633-60606067-;Right=chr21:33998225-33998688+;Distance=;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_014501:-;RightGenes=NM_001001132:+;NM_003024:+;XRef=;Frequency=0.00
chr21	CG	SV	33998225	33998688	37	-	.	ID=29;Type=complex;Left=chr19:60605633-60606067-;Right=chr21:33998225-33998688+;Distance=;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_014501:-;RightGenes=NM_001001132:+;NM_003024:+;XRef=;Frequency=0.00
chr19	CG	SV	60733675	60734654	12	.	.	ID=1643;Type=deletion;Left=chr19:60733675-60734080+;Right=chr19:60734011-60734654+;Distance=336;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem period 131;Tandem period 168;Tandem period 19;Tandem period 57;RightRepeat=Self chain;Tandem period 37;Tandem period 38;LeftGenes=NM_001101401:-;RightGenes=NM_001101401:-;XRef=rs71171963 (chr19:60733648-60733984);Frequency=1.00
chr19	CG	SV	60733675	60734080	12	+	.	ID=1643;Type=deletion;Left=chr19:60733675-60734080;Right=chr19:60734011-60734654
chr19	CG	SV	60734011	60734654	12	+	.	ID=1643;Type=deletion;Left=chr19:60733675-60734080;Right=chr19:60734011-60734654
chr19	CG	SV	61283168	61284024	11	.	.	ID=1642;Type=deletion;Left=chr19:61283168-61283581+;Right=chr19:61283858-61284024+;Distance=690;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 69;RightRepeat=Self chain;Tandem period 69;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	61283168	61283581	11	+	.	ID=1642;Type=deletion;Left=chr19:61283168-61283581;Right=chr19:61283858-61284024
chr19	CG	SV	61283858	61284024	11	+	.	ID=1642;Type=deletion;Left=chr19:61283168-61283581;Right=chr19:61283858-61284024
chr19	CG	SV	61509555	61510542	27	.	.	ID=1641;Type=deletion;Left=chr19:61509555-61509948+;Right=chr19:61510395-61510542+;Distance=840;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;Tandem period 84;RightRepeat=Self chain;Tandem period 84;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr19	CG	SV	61509555	61509948	27	+	.	ID=1641;Type=deletion;Left=chr19:61509555-61509948;Right=chr19:61510395-61510542
chr19	CG	SV	61510395	61510542	27	+	.	ID=1641;Type=deletion;Left=chr19:61509555-61509948;Right=chr19:61510395-61510542
chr19	CG	SV	61558270	61562233	55	.	.	ID=1640;Type=deletion;Left=chr19:61558270-61558799+;Right=chr19:61561735-61562233+;Distance=3465;DiscordantMatePairAlignments=55;LeftRepeat=Self chain;RightRepeat=L1PA10:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs72037353 (chr19:61558270-61561735);Frequency=0.12
chr19	CG	SV	61558270	61558799	55	+	.	ID=1640;Type=deletion;Left=chr19:61558270-61558799;Right=chr19:61561735-61562233
chr19	CG	SV	61561735	61562233	55	+	.	ID=1640;Type=deletion;Left=chr19:61558270-61558799;Right=chr19:61561735-61562233
chr19	CG	SV	62078040	62105475	11	.	.	ID=633;Type=tandem-duplication;Left=chr19:62078040-62078571-;Right=chr19:62105188-62105475-;Distance=26904;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	62078040	62078571	11	-	.	ID=633;Type=tandem-duplication;Left=chr19:62078040-62078571;Right=chr19:62105188-62105475
chr19	CG	SV	62105188	62105475	11	-	.	ID=633;Type=tandem-duplication;Left=chr19:62078040-62078571;Right=chr19:62105188-62105475
chr20	CG	SV	1337146	1339245	43	.	.	ID=1638;Type=deletion;Left=chr20:1337146-1337674+;Right=chr20:1338817-1339245+;Distance=1671;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs66897164 (chr20:1337143-1338814);Frequency=0.94
chr20	CG	SV	1337146	1337674	43	+	.	ID=1638;Type=deletion;Left=chr20:1337146-1337674;Right=chr20:1338817-1339245
chr20	CG	SV	1338817	1339245	43	+	.	ID=1638;Type=deletion;Left=chr20:1337146-1337674;Right=chr20:1338817-1339245
chr20	CG	SV	1943501	1945851	18	.	.	ID=1637;Type=deletion;Left=chr20:1943501-1943900+;Right=chr20:1945532-1945851+;Distance=2031;DiscordantMatePairAlignments=18;LeftRepeat=L1MD2:LINE:L1;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr20	CG	SV	1943501	1943900	18	+	.	ID=1637;Type=deletion;Left=chr20:1943501-1943900;Right=chr20:1945532-1945851
chr20	CG	SV	1945532	1945851	18	+	.	ID=1637;Type=deletion;Left=chr20:1943501-1943900;Right=chr20:1945532-1945851
chr20	CG	SV	2164857	2165103	98	.	.	ID=632;Type=tandem-duplication;Left=chr20:2164857-2164983-;Right=chr20:2164972-2165103-;Distance=120;DiscordantMatePairAlignments=98;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr20	CG	SV	2164857	2164983	98	-	.	ID=632;Type=tandem-duplication;Left=chr20:2164857-2164983;Right=chr20:2164972-2165103
chr20	CG	SV	2164972	2165103	98	-	.	ID=632;Type=tandem-duplication;Left=chr20:2164857-2164983;Right=chr20:2164972-2165103
chr20	CG	SV	2307903	2309076	25	.	.	ID=1636;Type=deletion;Left=chr20:2307903-2308110+;Right=chr20:2308608-2309076+;Distance=705;DiscordantMatePairAlignments=25;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67473611 (chr20:2307903-2308608);Frequency=0.76
chr20	CG	SV	2307903	2308110	25	+	.	ID=1636;Type=deletion;Left=chr20:2307903-2308110;Right=chr20:2308608-2309076
chr20	CG	SV	2308608	2309076	25	+	.	ID=1636;Type=deletion;Left=chr20:2307903-2308110;Right=chr20:2308608-2309076
chr20	CG	SV	4879297	4920461	21	.	.	ID=1635;Type=deletion;Left=chr20:4879297-4879749+;Right=chr20:4919975-4920461+;Distance=40678;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=NM_005116:-;NM_203327:-;RightGenes=NM_005116:-;NM_203327:-;XRef=;Frequency=0.00
chr20	CG	SV	4879297	4879749	21	+	.	ID=1635;Type=deletion;Left=chr20:4879297-4879749;Right=chr20:4919975-4920461
chr20	CG	SV	4919975	4920461	21	+	.	ID=1635;Type=deletion;Left=chr20:4879297-4879749;Right=chr20:4919975-4920461
chr20	CG	SV	6098959	6099813	10	.	.	ID=1634;Type=deletion;Left=chr20:6098959-6099436+;Right=chr20:6099291-6099813+;Distance=332;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs36062344 (chr20:6098959-6099291);Frequency=0.88
chr20	CG	SV	6098959	6099436	10	+	.	ID=1634;Type=deletion;Left=chr20:6098959-6099436;Right=chr20:6099291-6099813
chr20	CG	SV	6099291	6099813	10	+	.	ID=1634;Type=deletion;Left=chr20:6098959-6099436;Right=chr20:6099291-6099813
chr20	CG	SV	14711393	14829671	25	.	.	ID=1629;Type=deletion;Left=chr20:14711393-14711933+;Right=chr20:14829307-14829671+;Distance=117914;DiscordantMatePairAlignments=25;LeftRepeat=LTR16A:LTR:ERVL;RightRepeat=L1M4:LINE:L1;LeftGenes=NM_080676:+;RightGenes=NM_080676:+;XRef=;Frequency=0.00
chr20	CG	SV	14711393	14711933	25	+	.	ID=1629;Type=deletion;Left=chr20:14711393-14711933;Right=chr20:14829307-14829671
chr20	CG	SV	14829307	14829671	25	+	.	ID=1629;Type=deletion;Left=chr20:14711393-14711933;Right=chr20:14829307-14829671
chr20	CG	SV	14864688	14895829	21	.	.	ID=1628;Type=deletion;Left=chr20:14864688-14865241+;Right=chr20:14895387-14895829+;Distance=30699;DiscordantMatePairAlignments=21;LeftRepeat=L2:LINE:L2;RightRepeat=L1ME3:LINE:L1;LeftGenes=NM_080676:+;RightGenes=NM_080676:+;XRef=;Frequency=0.00
chr20	CG	SV	14864688	14865241	21	+	.	ID=1628;Type=deletion;Left=chr20:14864688-14865241;Right=chr20:14895387-14895829
chr20	CG	SV	14895387	14895829	21	+	.	ID=1628;Type=deletion;Left=chr20:14864688-14865241;Right=chr20:14895387-14895829
chr20	CG	SV	15249734	15252274	47	.	.	ID=1625;Type=deletion;Left=chr20:15249734-15250172+;Right=chr20:15251771-15252274+;Distance=2037;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=;LeftGenes=NM_001033087:+;NM_080676:+;RightGenes=NM_001033087:+;NM_080676:+;XRef=rs71725651 (chr20:15249731-15251768);Frequency=0.47
chr20	CG	SV	15249734	15250172	47	+	.	ID=1625;Type=deletion;Left=chr20:15249734-15250172;Right=chr20:15251771-15252274
chr20	CG	SV	15251771	15252274	47	+	.	ID=1625;Type=deletion;Left=chr20:15249734-15250172;Right=chr20:15251771-15252274
chr20	CG	SV	21234115	21237114	47	.	.	ID=1623;Type=deletion;Left=chr20:21234115-21234733+;Right=chr20:21236797-21237114+;Distance=2682;DiscordantMatePairAlignments=47;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_012255:+;RightGenes=NM_012255:+;XRef=rs67065922 (chr20:21234127-21236809);Frequency=0.88
chr20	CG	SV	21234115	21234733	47	+	.	ID=1623;Type=deletion;Left=chr20:21234115-21234733;Right=chr20:21236797-21237114
chr20	CG	SV	21236797	21237114	47	+	.	ID=1623;Type=deletion;Left=chr20:21234115-21234733;Right=chr20:21236797-21237114
chr20	CG	SV	24458243	24458672	12	.	.	ID=627;Type=tandem-duplication;Left=chr20:24458243-24458445-;Right=chr20:24458462-24458672-;Distance=227;DiscordantMatePairAlignments=12;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 42;RightRepeat=Self chain;LeftGenes=NM_024893:+;RightGenes=NM_024893:+;XRef=;Frequency=0.71
chr20	CG	SV	24458243	24458445	12	-	.	ID=627;Type=tandem-duplication;Left=chr20:24458243-24458445;Right=chr20:24458462-24458672
chr20	CG	SV	24458462	24458672	12	-	.	ID=627;Type=tandem-duplication;Left=chr20:24458243-24458445;Right=chr20:24458462-24458672
chr20	CG	SV	28252473	28255546	81	.	.	ID=1620;Type=deletion;Left=chr20:28252473-28253004+;Right=chr20:28255076-28255546+;Distance=2603;DiscordantMatePairAlignments=81;LeftRepeat=Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr20	CG	SV	28252473	28253004	81	+	.	ID=1620;Type=deletion;Left=chr20:28252473-28253004;Right=chr20:28255076-28255546
chr20	CG	SV	28255076	28255546	81	+	.	ID=1620;Type=deletion;Left=chr20:28252473-28253004;Right=chr20:28255076-28255546
chr20	CG	SV	32279599	32283444	109	.	.	ID=1619;Type=deletion;Left=chr20:32279599-32280069+;Right=chr20:32282896-32283444+;Distance=3297;DiscordantMatePairAlignments=109;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71190078 (chr20:32279599-32282896);Frequency=1.00
chr20	CG	SV	32279599	32280069	109	+	.	ID=1619;Type=deletion;Left=chr20:32279599-32280069;Right=chr20:32282896-32283444
chr20	CG	SV	32282896	32283444	109	+	.	ID=1619;Type=deletion;Left=chr20:32279599-32280069;Right=chr20:32282896-32283444
chr20	CG	SV	32705610	32708389	17	.	.	ID=1617;Type=deletion;Left=chr20:32705610-32706104+;Right=chr20:32708035-32708389+;Distance=2425;DiscordantMatePairAlignments=17;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_080476:-;RightGenes=NM_080476:-;XRef=rs67282265 (chr20:32705520-32707945);Frequency=0.59
chr20	CG	SV	32705610	32706104	17	+	.	ID=1617;Type=deletion;Left=chr20:32705610-32706104;Right=chr20:32708035-32708389
chr20	CG	SV	32708035	32708389	17	+	.	ID=1617;Type=deletion;Left=chr20:32705610-32706104;Right=chr20:32708035-32708389
chr20	CG	SV	39339933	39341301	11	.	.	ID=1614;Type=deletion;Left=chr20:39339933-39340753+;Right=chr20:39341119-39341301+;Distance=1186;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_015035:-;RightGenes=NM_015035:-;XRef=;Frequency=0.06
chr20	CG	SV	39339933	39340753	11	+	.	ID=1614;Type=deletion;Left=chr20:39339933-39340753;Right=chr20:39341119-39341301
chr20	CG	SV	39341119	39341301	11	+	.	ID=1614;Type=deletion;Left=chr20:39339933-39340753;Right=chr20:39341119-39341301
chr20	CG	SV	41458026	41459700	104	.	.	ID=1613;Type=deletion;Left=chr20:41458026-41458588+;Right=chr20:41459224-41459700+;Distance=1198;DiscordantMatePairAlignments=104;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67207892 (chr20:41458026-41459224);Frequency=0.94
chr20	CG	SV	41458026	41458588	104	+	.	ID=1613;Type=deletion;Left=chr20:41458026-41458588;Right=chr20:41459224-41459700
chr20	CG	SV	41459224	41459700	104	+	.	ID=1613;Type=deletion;Left=chr20:41458026-41458588;Right=chr20:41459224-41459700
chr20	CG	SV	41758296	41759053	72	.	.	ID=626;Type=tandem-duplication;Left=chr20:41758296-41758549-;Right=chr20:41758569-41759053-;Distance=504;DiscordantMatePairAlignments=72;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_002466:+;RightGenes=NM_002466:+;XRef=;Frequency=1.00
chr20	CG	SV	41758296	41758549	72	-	.	ID=626;Type=tandem-duplication;Left=chr20:41758296-41758549;Right=chr20:41758569-41759053
chr20	CG	SV	41758569	41759053	72	-	.	ID=626;Type=tandem-duplication;Left=chr20:41758296-41758549;Right=chr20:41758569-41759053
chr20	CG	SV	43637478	43641284	38	.	.	ID=1610;Type=deletion;Left=chr20:43637478-43638056+;Right=chr20:43640716-43641284+;Distance=3238;DiscordantMatePairAlignments=38;LeftRepeat=L1M3:LINE:L1;RightRepeat=;LeftGenes=NM_130896:-;NM_181510:-;RightGenes=NM_130896:-;NM_181510:-;XRef=;Frequency=0.29
chr20	CG	SV	43637478	43638056	38	+	.	ID=1610;Type=deletion;Left=chr20:43637478-43638056;Right=chr20:43640716-43641284
chr20	CG	SV	43640716	43641284	38	+	.	ID=1610;Type=deletion;Left=chr20:43637478-43638056;Right=chr20:43640716-43641284
chr20	CG	SV	43968913	43969661	28	.	.	ID=1609;Type=deletion;Left=chr20:43968913-43969471+;Right=chr20:43969349-43969661+;Distance=436;DiscordantMatePairAlignments=28;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_006227:-;NM_182676:-;RightGenes=NM_006227:-;NM_182676:-;XRef=rs72513541 (chr20:43968754-43969190);Frequency=0.88
chr20	CG	SV	43968913	43969471	28	+	.	ID=1609;Type=deletion;Left=chr20:43968913-43969471;Right=chr20:43969349-43969661
chr20	CG	SV	43969349	43969661	28	+	.	ID=1609;Type=deletion;Left=chr20:43968913-43969471;Right=chr20:43969349-43969661
chr20	CG	SV	46808837	46811473	59	.	.	ID=1607;Type=deletion;Left=chr20:46808837-46809612+;Right=chr20:46811253-46811473+;Distance=2416;DiscordantMatePairAlignments=59;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_020820:-;RightGenes=NM_020820:-;XRef=;Frequency=0.00
chr20	CG	SV	46808837	46809612	59	+	.	ID=1607;Type=deletion;Left=chr20:46808837-46809612;Right=chr20:46811253-46811473
chr20	CG	SV	46811253	46811473	59	+	.	ID=1607;Type=deletion;Left=chr20:46808837-46809612;Right=chr20:46811253-46811473
chr20	CG	SV	52080477	52091853	21	.	.	ID=1606;Type=deletion;Left=chr20:52080477-52080965+;Right=chr20:52091415-52091853+;Distance=10938;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=L1MC4a:LINE:L1;LeftGenes=NM_003657:-;RightGenes=NM_003657:-;XRef=;Frequency=0.29
chr20	CG	SV	52080477	52080965	21	+	.	ID=1606;Type=deletion;Left=chr20:52080477-52080965;Right=chr20:52091415-52091853
chr20	CG	SV	52091415	52091853	21	+	.	ID=1606;Type=deletion;Left=chr20:52080477-52080965;Right=chr20:52091415-52091853
chr20	CG	SV	53868030	53874532	128	.	.	ID=1604;Type=deletion;Left=chr20:53868030-53868607+;Right=chr20:53874036-53874532+;Distance=6006;DiscordantMatePairAlignments=128;LeftRepeat=L1HS:LINE:L1;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67942761 (chr20:53868017-53874023);Frequency=0.94
chr20	CG	SV	53868030	53868607	128	+	.	ID=1604;Type=deletion;Left=chr20:53868030-53868607;Right=chr20:53874036-53874532
chr20	CG	SV	53874036	53874532	128	+	.	ID=1604;Type=deletion;Left=chr20:53868030-53868607;Right=chr20:53874036-53874532
chr20	CG	SV	55512726	55514295	35	.	.	ID=1602;Type=deletion;Left=chr20:55512726-55513235+;Right=chr20:55514006-55514295+;Distance=1280;DiscordantMatePairAlignments=35;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_080618:-;RightGenes=NM_080618:-;XRef=;Frequency=0.18
chr20	CG	SV	55512726	55513235	35	+	.	ID=1602;Type=deletion;Left=chr20:55512726-55513235;Right=chr20:55514006-55514295
chr20	CG	SV	55514006	55514295	35	+	.	ID=1602;Type=deletion;Left=chr20:55512726-55513235;Right=chr20:55514006-55514295
chr20	CG	SV	57156850	57157699	19	.	.	ID=1601;Type=deletion;Left=chr20:57156850-57157457+;Right=chr20:57157184-57157699+;Distance=334;DiscordantMatePairAlignments=19;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35933436 (chr20:57156839-57157173);Frequency=0.12
chr20	CG	SV	57156850	57157457	19	+	.	ID=1601;Type=deletion;Left=chr20:57156850-57157457;Right=chr20:57157184-57157699
chr20	CG	SV	57157184	57157699	19	+	.	ID=1601;Type=deletion;Left=chr20:57156850-57157457;Right=chr20:57157184-57157699
chr20	CG	SV	58545066	58558693	31	.	.	ID=1600;Type=deletion;Left=chr20:58545066-58545474+;Right=chr20:58558260-58558693+;Distance=13194;DiscordantMatePairAlignments=31;LeftRepeat=AluSq:SINE:Alu;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr20	CG	SV	58545066	58545474	31	+	.	ID=1600;Type=deletion;Left=chr20:58545066-58545474;Right=chr20:58558260-58558693
chr20	CG	SV	58558260	58558693	31	+	.	ID=1600;Type=deletion;Left=chr20:58545066-58545474;Right=chr20:58558260-58558693
chr20	CG	SV	59337601	59337925	24	.	.	ID=610;Type=tandem-duplication;Left=chr20:59337601-59337734-;Right=chr20:59337738-59337925-;Distance=191;DiscordantMatePairAlignments=24;LeftRepeat=;RightRepeat=;LeftGenes=NM_001794:+;RightGenes=NM_001794:+;XRef=;Frequency=0.88
chr20	CG	SV	59337601	59337734	24	-	.	ID=610;Type=tandem-duplication;Left=chr20:59337601-59337734;Right=chr20:59337738-59337925
chr20	CG	SV	59337738	59337925	24	-	.	ID=610;Type=tandem-duplication;Left=chr20:59337601-59337734;Right=chr20:59337738-59337925
chr20	CG	SV	61195143	61196625	182	.	.	ID=1582;Type=deletion;Left=chr20:61195143-61195729+;Right=chr20:61196042-61196625+;Distance=899;DiscordantMatePairAlignments=182;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67749901 (chr20:61195143-61196041);Frequency=1.00
chr20	CG	SV	61195143	61195729	182	+	.	ID=1582;Type=deletion;Left=chr20:61195143-61195729;Right=chr20:61196042-61196625
chr20	CG	SV	61196042	61196625	182	+	.	ID=1582;Type=deletion;Left=chr20:61195143-61195729;Right=chr20:61196042-61196625
chr20	CG	SV	61862543	61863288	37	.	.	ID=1580;Type=deletion;Left=chr20:61862543-61863030+;Right=chr20:61863085-61863288+;Distance=542;DiscordantMatePairAlignments=37;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_025224:-;RightGenes=NM_025224:-;XRef=;Frequency=0.00
chr20	CG	SV	61862543	61863030	37	+	.	ID=1580;Type=deletion;Left=chr20:61862543-61863030;Right=chr20:61863085-61863288
chr20	CG	SV	61863085	61863288	37	+	.	ID=1580;Type=deletion;Left=chr20:61862543-61863030;Right=chr20:61863085-61863288
chr20	CG	SV	61981505	61982367	11	.	.	ID=1579;Type=deletion;Left=chr20:61981505-61981789+;Right=chr20:61982265-61982367+;Distance=760;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 40;RightRepeat=Self chain;Tandem period 40;LeftGenes=NM_003288:+;NM_199359:+;NM_199360:+;NM_199361:+;NM_199362:+;NM_199363:+;RightGenes=NM_003288:+;NM_199359:+;NM_199360:+;NM_199361:+;NM_199362:+;NM_199363:+;XRef=;Frequency=0.10
chr20	CG	SV	61981505	61981789	11	+	.	ID=1579;Type=deletion;Left=chr20:61981505-61981789;Right=chr20:61982265-61982367
chr20	CG	SV	61982265	61982367	11	+	.	ID=1579;Type=deletion;Left=chr20:61981505-61981789;Right=chr20:61982265-61982367
chr20	CG	SV	62066710	62068404	133	.	.	ID=1578;Type=deletion;Left=chr20:62066710-62067401+;Right=chr20:62067944-62068404+;Distance=1234;DiscordantMatePairAlignments=133;LeftRepeat=Self chain;Tandem period 43;RightRepeat=Self chain;Tandem period 43;LeftGenes=NM_020713:-;RightGenes=NM_020713:-;XRef=;Frequency=0.65
chr20	CG	SV	62066710	62067401	133	+	.	ID=1578;Type=deletion;Left=chr20:62066710-62067401;Right=chr20:62067944-62068404
chr20	CG	SV	62067944	62068404	133	+	.	ID=1578;Type=deletion;Left=chr20:62066710-62067401;Right=chr20:62067944-62068404
chr21	CG	SV	17534203	17535992	22	.	.	ID=1566;Type=deletion;Left=chr21:17534203-17534721+;Right=chr21:17535507-17535992+;Distance=1304;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;RightRepeat=L1PA7:LINE:L1;Tandem period 27;LeftGenes=;RightGenes=;XRef=rs71781010 (chr21:17534203-17535507);Frequency=0.76
chr21	CG	SV	17534203	17534721	22	+	.	ID=1566;Type=deletion;Left=chr21:17534203-17534721;Right=chr21:17535507-17535992
chr21	CG	SV	17535507	17535992	22	+	.	ID=1566;Type=deletion;Left=chr21:17534203-17534721;Right=chr21:17535507-17535992
chr21	CG	SV	18248710	18251506	31	.	.	ID=1565;Type=deletion;Left=chr21:18248710-18249195+;Right=chr21:18251219-18251506+;Distance=2509;DiscordantMatePairAlignments=31;LeftRepeat=MLT2B1:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr21	CG	SV	18248710	18249195	31	+	.	ID=1565;Type=deletion;Left=chr21:18248710-18249195;Right=chr21:18251219-18251506
chr21	CG	SV	18251219	18251506	31	+	.	ID=1565;Type=deletion;Left=chr21:18248710-18249195;Right=chr21:18251219-18251506
chr21	CG	SV	23296667	23297707	55	.	.	ID=1562;Type=deletion;Left=chr21:23296667-23297140+;Right=chr21:23297282-23297707+;Distance=615;DiscordantMatePairAlignments=55;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71775386 (chr21:23296667-23297282);Frequency=0.76
chr21	CG	SV	23296667	23297140	55	+	.	ID=1562;Type=deletion;Left=chr21:23296667-23297140;Right=chr21:23297282-23297707
chr21	CG	SV	23297282	23297707	55	+	.	ID=1562;Type=deletion;Left=chr21:23296667-23297140;Right=chr21:23297282-23297707
chr21	CG	SV	26296029	26296570	146	.	.	ID=3401;Type=inversion;Left=chr21:26296029-26296618+;Right=chr21:26296032-26296570-;Distance=541;DiscordantMatePairAlignments=146;LeftRepeat=;RightRepeat=;LeftGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;RightGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;XRef=;Frequency=1.00
chr21	CG	SV	26296029	26296618	146	+	.	ID=3401;Type=inversion;Left=chr21:26296029-26296618;Right=chr21:26296032-26296570
chr21	CG	SV	26296032	26296570	146	+	.	ID=3401;Type=inversion;Left=chr21:26296029-26296618;Right=chr21:26296032-26296570
chr21	CG	SV	26295478	26297089	167	.	.	ID=21;Type=inversion;Left=chr21:26295478-26296029-;Right=chr21:26296571-26297089+;Distance=542;DiscordantMatePairAlignments=167;LeftRepeat=;RightRepeat=;LeftGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;RightGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;XRef=;Frequency=1.00
chr21	CG	SV	26295478	26296029	167	-	.	ID=21;Type=inversion;Left=chr21:26295478-26296029;Right=chr21:26296571-26297089
chr21	CG	SV	26296571	26297089	167	-	.	ID=21;Type=inversion;Left=chr21:26295478-26296029;Right=chr21:26296571-26297089
chr21	CG	SV	26942548	26943506	55	.	.	ID=3400;Type=complex;Left=chr21:26942548-26943063+;Right=chr21:26943194-26943506-;Distance=958;DiscordantMatePairAlignments=55;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	26942548	26943063	55	+	.	ID=3400;Type=complex;Left=chr21:26942548-26943063;Right=chr21:26943194-26943506
chr21	CG	SV	26943194	26943506	55	+	.	ID=3400;Type=complex;Left=chr21:26942548-26943063;Right=chr21:26943194-26943506
chr21	CG	SV	26942019	26944146	63	.	.	ID=20;Type=complex;Left=chr21:26942019-26942554-;Right=chr21:26943596-26944146+;Distance=1042;DiscordantMatePairAlignments=63;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	26942019	26942554	63	-	.	ID=20;Type=complex;Left=chr21:26942019-26942554;Right=chr21:26943596-26944146
chr21	CG	SV	26943596	26944146	63	-	.	ID=20;Type=complex;Left=chr21:26942019-26942554;Right=chr21:26943596-26944146
chr21	CG	SV	29185623	29186445	27	.	.	ID=1560;Type=deletion;Left=chr21:29185623-29186038+;Right=chr21:29186172-29186445+;Distance=549;DiscordantMatePairAlignments=27;LeftRepeat=L1MC1:LINE:L1;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66547158 (chr21:29185404-29185953);Frequency=1.00
chr21	CG	SV	29185623	29186038	27	+	.	ID=1560;Type=deletion;Left=chr21:29185623-29186038;Right=chr21:29186172-29186445
chr21	CG	SV	29186172	29186445	27	+	.	ID=1560;Type=deletion;Left=chr21:29185623-29186038;Right=chr21:29186172-29186445
chr21	CG	SV	41833816	41834766	25	.	.	ID=1551;Type=deletion;Left=chr21:41833816-41834500+;Right=chr21:41834266-41834766+;Distance=450;DiscordantMatePairAlignments=25;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr21	CG	SV	41833816	41834500	25	+	.	ID=1551;Type=deletion;Left=chr21:41833816-41834500;Right=chr21:41834266-41834766
chr21	CG	SV	41834266	41834766	25	+	.	ID=1551;Type=deletion;Left=chr21:41833816-41834500;Right=chr21:41834266-41834766
chr21	CG	SV	42099828	42100680	25	.	.	ID=1549;Type=deletion;Left=chr21:42099828-42099988+;Right=chr21:42100435-42100680+;Distance=607;DiscordantMatePairAlignments=25;LeftRepeat=(CCA)n:Simple_repeat:Simple_repeat;Tandem CAC;Tandem period 15;RightRepeat=(CCA)n:Simple_repeat:Simple_repeat;LeftGenes=NM_001040424:-;NM_022115:-;RightGenes=NM_001040424:-;NM_022115:-;XRef=;Frequency=1.00
chr21	CG	SV	42099828	42099988	25	+	.	ID=1549;Type=deletion;Left=chr21:42099828-42099988;Right=chr21:42100435-42100680
chr21	CG	SV	42100435	42100680	25	+	.	ID=1549;Type=deletion;Left=chr21:42099828-42099988;Right=chr21:42100435-42100680
chr21	CG	SV	42223189	42227107	181	.	.	ID=1548;Type=deletion;Left=chr21:42223189-42223850+;Right=chr21:42226558-42227107+;Distance=3369;DiscordantMatePairAlignments=181;LeftRepeat=LTR36:LTR:ERV1;RightRepeat=;LeftGenes=NM_015500:-;RightGenes=NM_015500:-;XRef=rs72055785 (chr21:42223185-42226554);Frequency=0.41
chr21	CG	SV	42223189	42223850	181	+	.	ID=1548;Type=deletion;Left=chr21:42223189-42223850;Right=chr21:42226558-42227107
chr21	CG	SV	42226558	42227107	181	+	.	ID=1548;Type=deletion;Left=chr21:42223189-42223850;Right=chr21:42226558-42227107
chr21	CG	SV	43794796	43798362	244	.	.	ID=1547;Type=deletion;Left=chr21:43794796-43795349+;Right=chr21:43797732-43798362+;Distance=2936;DiscordantMatePairAlignments=244;LeftRepeat=;RightRepeat=Tigger4(Zombi):DNA:MER2_type;LeftGenes=NM_007031:-;RightGenes=NM_007031:-;XRef=rs72438714 (chr21:43794796-43797732);Frequency=0.53
chr21	CG	SV	43794796	43795349	244	+	.	ID=1547;Type=deletion;Left=chr21:43794796-43795349;Right=chr21:43797732-43798362
chr21	CG	SV	43797732	43798362	244	+	.	ID=1547;Type=deletion;Left=chr21:43794796-43795349;Right=chr21:43797732-43798362
chr21	CG	SV	44443627	44445542	68	.	.	ID=1546;Type=deletion;Left=chr21:44443627-44444206+;Right=chr21:44445149-44445542+;Distance=1522;DiscordantMatePairAlignments=68;LeftRepeat=AluSq:SINE:Alu;RightRepeat=MER65B-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr21	CG	SV	44443627	44444206	68	+	.	ID=1546;Type=deletion;Left=chr21:44443627-44444206;Right=chr21:44445149-44445542
chr21	CG	SV	44445149	44445542	68	+	.	ID=1546;Type=deletion;Left=chr21:44443627-44444206;Right=chr21:44445149-44445542
chr21	CG	SV	45299343	45299457	275	.	.	ID=605;Type=tandem-duplication;Left=chr21:45299343-45299413-;Right=chr21:45299365-45299457-;Distance=44;DiscordantMatePairAlignments=275;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	45299343	45299413	275	-	.	ID=605;Type=tandem-duplication;Left=chr21:45299343-45299413;Right=chr21:45299365-45299457
chr21	CG	SV	45299365	45299457	275	-	.	ID=605;Type=tandem-duplication;Left=chr21:45299343-45299413;Right=chr21:45299365-45299457
chr21	CG	SV	46212457	46214648	15	.	.	ID=1545;Type=deletion;Left=chr21:46212457-46213043+;Right=chr21:46214160-46214648+;Distance=1703;DiscordantMatePairAlignments=15;LeftRepeat=L1MC4a:LINE:L1;Self chain;RightRepeat=MLT1B:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=rs72238485 (chr21:46212457-46214160);Frequency=0.94
chr21	CG	SV	46212457	46213043	15	+	.	ID=1545;Type=deletion;Left=chr21:46212457-46213043;Right=chr21:46214160-46214648
chr21	CG	SV	46214160	46214648	15	+	.	ID=1545;Type=deletion;Left=chr21:46212457-46213043;Right=chr21:46214160-46214648
chr21	CG	SV	46481780	46483682	14	.	.	ID=1544;Type=deletion;Left=chr21:46481780-46482313+;Right=chr21:46483102-46483682+;Distance=1322;DiscordantMatePairAlignments=14;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_003906:-;NR_002776:+;RightGenes=NM_003906:-;NR_002776:+;XRef=rs72308699 (chr21:46481779-46483101);Frequency=0.35
chr21	CG	SV	46481780	46482313	14	+	.	ID=1544;Type=deletion;Left=chr21:46481780-46482313;Right=chr21:46483102-46483682
chr21	CG	SV	46483102	46483682	14	+	.	ID=1544;Type=deletion;Left=chr21:46481780-46482313;Right=chr21:46483102-46483682
chr22	CG	SV	16150350	16159573	13	.	.	ID=1543;Type=deletion;Left=chr22:16150350-16150754+;Right=chr22:16159108-16159573+;Distance=8758;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=L1PA6:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr22	CG	SV	16150350	16150754	13	+	.	ID=1543;Type=deletion;Left=chr22:16150350-16150754;Right=chr22:16159108-16159573
chr22	CG	SV	16159108	16159573	13	+	.	ID=1543;Type=deletion;Left=chr22:16150350-16150754;Right=chr22:16159108-16159573
chr22	CG	SV	16437876	16440779	10	.	.	ID=1540;Type=deletion;Left=chr22:16437876-16438233+;Right=chr22:16440582-16440779+;Distance=2706;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_031481:+;RightGenes=NM_031481:+;XRef=rs71187331 (chr22:16437770-16440477);Frequency=0.94
chr22	CG	SV	16437876	16438233	10	+	.	ID=1540;Type=deletion;Left=chr22:16437876-16438233;Right=chr22:16440582-16440779
chr22	CG	SV	16440582	16440779	10	+	.	ID=1540;Type=deletion;Left=chr22:16437876-16438233;Right=chr22:16440582-16440779
chr22	CG	SV	17951619	17953305	36	.	.	ID=1538;Type=deletion;Left=chr22:17951619-17952148+;Right=chr22:17953102-17953305+;Distance=1483;DiscordantMatePairAlignments=36;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L1MA4A:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr22	CG	SV	17951619	17952148	36	+	.	ID=1538;Type=deletion;Left=chr22:17951619-17952148;Right=chr22:17953102-17953305
chr22	CG	SV	17953102	17953305	36	+	.	ID=1538;Type=deletion;Left=chr22:17951619-17952148;Right=chr22:17953102-17953305
chr22	CG	SV	21032951	21082531	34	.	.	ID=603;Type=tandem-duplication;Left=chr22:21032951-21033195-;Right=chr22:21082120-21082531-;Distance=49336;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr22	CG	SV	21032951	21033195	34	-	.	ID=603;Type=tandem-duplication;Left=chr22:21032951-21033195;Right=chr22:21082120-21082531
chr22	CG	SV	21082120	21082531	34	-	.	ID=603;Type=tandem-duplication;Left=chr22:21032951-21033195;Right=chr22:21082120-21082531
chr22	CG	SV	21808575	21809952	56	.	.	ID=1536;Type=deletion;Left=chr22:21808575-21808972+;Right=chr22:21809706-21809952+;Distance=1131;DiscordantMatePairAlignments=56;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_014433:-;RightGenes=NM_014433:-;XRef=rs66466474 (chr22:21808353-21809484);Frequency=0.41
chr22	CG	SV	21808575	21808972	56	+	.	ID=1536;Type=deletion;Left=chr22:21808575-21808972;Right=chr22:21809706-21809952
chr22	CG	SV	21809706	21809952	56	+	.	ID=1536;Type=deletion;Left=chr22:21808575-21808972;Right=chr22:21809706-21809952
chr22	CG	SV	23780079	23783199	22	.	.	ID=1534;Type=deletion;Left=chr22:23780079-23780518+;Right=chr22:23782684-23783199+;Distance=2605;DiscordantMatePairAlignments=22;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_001145206:+;RightGenes=NM_001145206:+;XRef=;Frequency=0.06
chr22	CG	SV	23780079	23780518	22	+	.	ID=1534;Type=deletion;Left=chr22:23780079-23780518;Right=chr22:23782684-23783199
chr22	CG	SV	23782684	23783199	22	+	.	ID=1534;Type=deletion;Left=chr22:23780079-23780518;Right=chr22:23782684-23783199
chr22	CG	SV	25498076	25500312	112	.	.	ID=1533;Type=deletion;Left=chr22:25498076-25498662+;Right=chr22:25499802-25500312+;Distance=1726;DiscordantMatePairAlignments=112;LeftRepeat=(TTTTA)n:Simple_repeat:Simple_repeat;Self chain;Tandem TTTTA;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67812002 (chr22:25498076-25499802);Frequency=1.00
chr22	CG	SV	25498076	25498662	112	+	.	ID=1533;Type=deletion;Left=chr22:25498076-25498662;Right=chr22:25499802-25500312
chr22	CG	SV	25499802	25500312	112	+	.	ID=1533;Type=deletion;Left=chr22:25498076-25498662;Right=chr22:25499802-25500312
chr22	CG	SV	29375468	29376736	25	.	.	ID=1532;Type=deletion;Left=chr22:29375468-29375861+;Right=chr22:29376235-29376736+;Distance=767;DiscordantMatePairAlignments=25;LeftRepeat=;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr22	CG	SV	29375468	29375861	25	+	.	ID=1532;Type=deletion;Left=chr22:29375468-29375861;Right=chr22:29376235-29376736
chr22	CG	SV	29376235	29376736	25	+	.	ID=1532;Type=deletion;Left=chr22:29375468-29375861;Right=chr22:29376235-29376736
chr22	CG	SV	33789001	33789784	15	.	.	ID=1530;Type=deletion;Left=chr22:33789001-33789694+;Right=chr22:33789421-33789784+;Distance=420;DiscordantMatePairAlignments=15;LeftRepeat=MSTA:LTR:MaLR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66506111 (chr22:33789010-33789421);Frequency=0.41
chr22	CG	SV	33789001	33789694	15	+	.	ID=1530;Type=deletion;Left=chr22:33789001-33789694;Right=chr22:33789421-33789784
chr22	CG	SV	33789421	33789784	15	+	.	ID=1530;Type=deletion;Left=chr22:33789001-33789694;Right=chr22:33789421-33789784
chr22	CG	SV	35473132	35478299	19	.	.	ID=1528;Type=deletion;Left=chr22:35473132-35473582+;Right=chr22:35477858-35478299+;Distance=4726;DiscordantMatePairAlignments=19;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71819381 (chr22:35473093-35477819);Frequency=1.00
chr22	CG	SV	35473132	35473582	19	+	.	ID=1528;Type=deletion;Left=chr22:35473132-35473582;Right=chr22:35477858-35478299
chr22	CG	SV	35477858	35478299	19	+	.	ID=1528;Type=deletion;Left=chr22:35473132-35473582;Right=chr22:35477858-35478299
chr22	CG	SV	37624054	37629003	22	.	.	ID=1526;Type=deletion;Left=chr22:37624054-37624412+;Right=chr22:37628634-37629003+;Distance=4580;DiscordantMatePairAlignments=22;LeftRepeat=L1MC4a:LINE:L1;Self chain;RightRepeat=LTR38-int:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs66483755 (chr22:37624054-37628634);Frequency=0.35
chr22	CG	SV	37624054	37624412	22	+	.	ID=1526;Type=deletion;Left=chr22:37624054-37624412;Right=chr22:37628634-37629003
chr22	CG	SV	37628634	37629003	22	+	.	ID=1526;Type=deletion;Left=chr22:37624054-37624412;Right=chr22:37628634-37629003
chr22	CG	SV	39124216	39125509	14	.	.	ID=1523;Type=deletion;Left=chr22:39124216-39124773+;Right=chr22:39125235-39125509+;Distance=1019;DiscordantMatePairAlignments=14;LeftRepeat=L2:LINE:L2;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_015705:+;RightGenes=NM_015705:+;XRef=;Frequency=0.47
chr22	CG	SV	39124216	39124773	14	+	.	ID=1523;Type=deletion;Left=chr22:39124216-39124773;Right=chr22:39125235-39125509
chr22	CG	SV	39125235	39125509	14	+	.	ID=1523;Type=deletion;Left=chr22:39124216-39124773;Right=chr22:39125235-39125509
chr22	CG	SV	41431538	41432470	10	.	.	ID=1521;Type=deletion;Left=chr22:41431538-41432121+;Right=chr22:41432310-41432470+;Distance=772;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_017436:-;RightGenes=NM_017436:-;XRef=;Frequency=0.76
chr22	CG	SV	41431538	41432121	10	+	.	ID=1521;Type=deletion;Left=chr22:41431538-41432121;Right=chr22:41432310-41432470
chr22	CG	SV	41432310	41432470	10	+	.	ID=1521;Type=deletion;Left=chr22:41431538-41432121;Right=chr22:41432310-41432470
chr22	CG	SV	42006673	42007959	29	.	.	ID=1520;Type=deletion;Left=chr22:42006673-42006861+;Right=chr22:42007349-42007959+;Distance=676;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;Tandem period 121;RightRepeat=Self chain;Tandem period 121;Tandem period 47;LeftGenes=NM_173050:-;RightGenes=NM_173050:-;XRef=;Frequency=0.59
chr22	CG	SV	42006673	42006861	29	+	.	ID=1520;Type=deletion;Left=chr22:42006673-42006861;Right=chr22:42007349-42007959
chr22	CG	SV	42007349	42007959	29	+	.	ID=1520;Type=deletion;Left=chr22:42006673-42006861;Right=chr22:42007349-42007959
chr22	CG	SV	43631106	43632097	60	.	.	ID=1519;Type=deletion;Left=chr22:43631106-43631719+;Right=chr22:43631772-43632097+;Distance=666;DiscordantMatePairAlignments=60;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSp:SINE:Alu;LeftGenes=NM_001017526:+;NM_181334:+;NM_181335:+;RightGenes=NM_001017526:+;NM_181334:+;NM_181335:+;XRef=rs72110256 (chr22:43631077-43631743);Frequency=0.29
chr22	CG	SV	43631106	43631719	60	+	.	ID=1519;Type=deletion;Left=chr22:43631106-43631719;Right=chr22:43631772-43632097
chr22	CG	SV	43631772	43632097	60	+	.	ID=1519;Type=deletion;Left=chr22:43631106-43631719;Right=chr22:43631772-43632097
chr22	CG	SV	46075133	46076033	29	.	.	ID=1517;Type=deletion;Left=chr22:46075133-46075528+;Right=chr22:46075529-46076033+;Distance=396;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67878846 (chr22:46075127-46075523);Frequency=0.53
chr22	CG	SV	46075133	46075528	29	+	.	ID=1517;Type=deletion;Left=chr22:46075133-46075528;Right=chr22:46075529-46076033
chr22	CG	SV	46075529	46076033	29	+	.	ID=1517;Type=deletion;Left=chr22:46075133-46075528;Right=chr22:46075529-46076033
chr22	CG	SV	47450166	47451300	15	.	.	ID=1515;Type=deletion;Left=chr22:47450166-47450679+;Right=chr22:47451027-47451300+;Distance=861;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem period 41;RightRepeat=Self chain;Tandem period 41;LeftGenes=NM_001082967:+;NM_015381:+;RightGenes=NM_001082967:+;NM_015381:+;XRef=rs71194978 (chr22:47450008-47450787);Frequency=0.35
chr22	CG	SV	47450166	47450679	15	+	.	ID=1515;Type=deletion;Left=chr22:47450166-47450679;Right=chr22:47451027-47451300
chr22	CG	SV	47451027	47451300	15	+	.	ID=1515;Type=deletion;Left=chr22:47450166-47450679;Right=chr22:47451027-47451300
chrX	CG	SV	1158401	1158865	16	.	.	ID=597;Type=tandem-duplication;Left=chrX:1158401-1158621-;Right=chrX:1158677-1158865-;Distance=244;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chrX	CG	SV	1158401	1158621	16	-	.	ID=597;Type=tandem-duplication;Left=chrX:1158401-1158621;Right=chrX:1158677-1158865
chrX	CG	SV	1158677	1158865	16	-	.	ID=597;Type=tandem-duplication;Left=chrX:1158401-1158621;Right=chrX:1158677-1158865
chrX	CG	SV	1176109	1176729	10	.	.	ID=1509;Type=deletion;Left=chrX:1176109-1176598+;Right=chrX:1176523-1176729+;Distance=414;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem period 138;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chrX	CG	SV	1176109	1176598	10	+	.	ID=1509;Type=deletion;Left=chrX:1176109-1176598;Right=chrX:1176523-1176729
chrX	CG	SV	1176523	1176729	10	+	.	ID=1509;Type=deletion;Left=chrX:1176109-1176598;Right=chrX:1176523-1176729
chrX	CG	SV	1393246	1394212	14	.	.	ID=1508;Type=deletion;Left=chrX:1393246-1393541+;Right=chrX:1393911-1394212+;Distance=665;DiscordantMatePairAlignments=14;LeftRepeat=(CACCC)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem period 19;RightRepeat=SegDup;Self chain;Tandem period 19;LeftGenes=;RightGenes=;XRef=rs72364093 (chrX:1393288-1393744);Frequency=0.71
chrX	CG	SV	1393246	1393541	14	+	.	ID=1508;Type=deletion;Left=chrX:1393246-1393541;Right=chrX:1393911-1394212
chrX	CG	SV	1393911	1394212	14	+	.	ID=1508;Type=deletion;Left=chrX:1393246-1393541;Right=chrX:1393911-1394212
chrX	CG	SV	1780516	1781889	12	.	.	ID=1504;Type=deletion;Left=chrX:1780516-1780661+;Right=chrX:1781547-1781889+;Distance=1031;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;Tandem period 43;RightRepeat=SegDup;Self chain;Tandem period 43;LeftGenes=;RightGenes=;XRef=rs66487877 (chrX:1780536-1781309);Frequency=0.65
chrX	CG	SV	1780516	1780661	12	+	.	ID=1504;Type=deletion;Left=chrX:1780516-1780661;Right=chrX:1781547-1781889
chrX	CG	SV	1781547	1781889	12	+	.	ID=1504;Type=deletion;Left=chrX:1780516-1780661;Right=chrX:1781547-1781889
chrX	CG	SV	1871122	1872390	102	.	.	ID=1503;Type=deletion;Left=chrX:1871122-1871473+;Right=chrX:1871721-1872390+;Distance=599;DiscordantMatePairAlignments=102;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs72117520 (chrX:1870931-1871530);Frequency=0.41
chrX	CG	SV	1871122	1871473	102	+	.	ID=1503;Type=deletion;Left=chrX:1871122-1871473;Right=chrX:1871721-1872390
chrX	CG	SV	1871721	1872390	102	+	.	ID=1503;Type=deletion;Left=chrX:1871122-1871473;Right=chrX:1871721-1872390
chrX	CG	SV	2302763	2305512	53	.	.	ID=1501;Type=deletion;Left=chrX:2302763-2303548+;Right=chrX:2305018-2305512+;Distance=2255;DiscordantMatePairAlignments=53;LeftRepeat=AluSp:SINE:Alu;SegDup;Self chain;RightRepeat=AluSc:SINE:Alu;SegDup;Self chain;LeftGenes=NM_145177:-;RightGenes=NM_145177:-;XRef=;Frequency=0.18
chrX	CG	SV	2302763	2303548	53	+	.	ID=1501;Type=deletion;Left=chrX:2302763-2303548;Right=chrX:2305018-2305512
chrX	CG	SV	2305018	2305512	53	+	.	ID=1501;Type=deletion;Left=chrX:2302763-2303548;Right=chrX:2305018-2305512
chrX	CG	SV	5065346	5067929	57	.	.	ID=1499;Type=deletion;Left=chrX:5065346-5065952+;Right=chrX:5067502-5067929+;Distance=2156;DiscordantMatePairAlignments=57;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67919263 (chrX:5065343-5067499);Frequency=0.94
chrX	CG	SV	5065346	5065952	57	+	.	ID=1499;Type=deletion;Left=chrX:5065346-5065952;Right=chrX:5067502-5067929
chrX	CG	SV	5067502	5067929	57	+	.	ID=1499;Type=deletion;Left=chrX:5065346-5065952;Right=chrX:5067502-5067929
chrX	CG	SV	5738580	5740795	41	.	.	ID=17;Type=distal-duplication;Left=chrX:5738580-5739124-;Right=chrX:5740611-5740795+;Distance=1487;DiscordantMatePairAlignments=41;LeftRepeat=Self chain;RightRepeat=Self chain;THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	5738580	5739124	41	-	.	ID=17;Type=distal-duplication;Left=chrX:5738580-5739124;Right=chrX:5740611-5740795
chrX	CG	SV	5740611	5740795	41	-	.	ID=17;Type=distal-duplication;Left=chrX:5738580-5739124;Right=chrX:5740611-5740795
chrX	CG	SV	5739126	5740791	15	.	.	ID=3395;Type=distal-duplication;Left=chrX:5739126-5739635+;Right=chrX:5740662-5740791-;Distance=1665;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	5739126	5739635	15	+	.	ID=3395;Type=distal-duplication;Left=chrX:5739126-5739635;Right=chrX:5740662-5740791
chrX	CG	SV	5740662	5740791	15	+	.	ID=3395;Type=distal-duplication;Left=chrX:5739126-5739635;Right=chrX:5740662-5740791
chrX	CG	SV	11863117	11869904	119	.	.	ID=1495;Type=deletion;Left=chrX:11863117-11863698+;Right=chrX:11869367-11869904+;Distance=6250;DiscordantMatePairAlignments=119;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67708312 (chrX:11863106-11869356);Frequency=0.47
chrX	CG	SV	11863117	11863698	119	+	.	ID=1495;Type=deletion;Left=chrX:11863117-11863698;Right=chrX:11869367-11869904
chrX	CG	SV	11869367	11869904	119	+	.	ID=1495;Type=deletion;Left=chrX:11863117-11863698;Right=chrX:11869367-11869904
chrX	CG	SV	17430551	17431418	12	.	.	ID=1492;Type=deletion;Left=chrX:17430551-17431163+;Right=chrX:17430866-17431418+;Distance=315;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_198270:+;RightGenes=NM_198270:+;XRef=rs66968754 (chrX:17430537-17430852);Frequency=0.88
chrX	CG	SV	17430551	17431163	12	+	.	ID=1492;Type=deletion;Left=chrX:17430551-17431163;Right=chrX:17430866-17431418
chrX	CG	SV	17430866	17431418	12	+	.	ID=1492;Type=deletion;Left=chrX:17430551-17431163;Right=chrX:17430866-17431418
chrX	CG	SV	52902893	55695675	23	.	.	ID=592;Type=distal-duplication;Left=chrX:52902893-52903445-;Right=chrX:55695254-55695675-;Distance=2792230;DiscordantMatePairAlignments=23;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	52902893	52903445	23	-	.	ID=592;Type=distal-duplication;Left=chrX:52902893-52903445;Right=chrX:55695254-55695675
chrX	CG	SV	55695254	55695675	23	-	.	ID=592;Type=distal-duplication;Left=chrX:52902893-52903445;Right=chrX:55695254-55695675
chrX	CG	SV	52904502	52907076	20	.	.	ID=1480;Type=deletion;Left=chrX:52904502-52904932+;Right=chrX:52906757-52907076+;Distance=2255;DiscordantMatePairAlignments=20;LeftRepeat=L1M5:LINE:L1;L1PA3:LINE:L1;Self chain;RightRepeat=L1PA4:LINE:L1;Self chain;Tandem period 385;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	52904502	52904932	20	+	.	ID=1480;Type=deletion;Left=chrX:52904502-52904932;Right=chrX:52906757-52907076
chrX	CG	SV	52906757	52907076	20	+	.	ID=1480;Type=deletion;Left=chrX:52904502-52904932;Right=chrX:52906757-52907076
chrX	CG	SV	52908835	55696096	13	.	.	ID=1478;Type=distal-duplication;Left=chrX:52908835-52909373+;Right=chrX:55695826-55696096+;Distance=2786991;DiscordantMatePairAlignments=13;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_130776:-;NM_133179:-;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	52908835	52909373	13	+	.	ID=1478;Type=distal-duplication;Left=chrX:52908835-52909373;Right=chrX:55695826-55696096
chrX	CG	SV	55695826	55696096	13	+	.	ID=1478;Type=distal-duplication;Left=chrX:52908835-52909373;Right=chrX:55695826-55696096
chrX	CG	SV	55189472	55202389	43	.	.	ID=1479;Type=deletion;Left=chrX:55189472-55189887+;Right=chrX:55202293-55202389+;Distance=12821;DiscordantMatePairAlignments=43;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001166699:-;NM_001166700:-;NM_001166701:-;NM_001166702:-;NM_001166703:-;NM_001166704:-;NM_138362:-;NR_030722:-;RightGenes=NM_001166699:-;NM_001166700:-;NM_001166701:-;NM_001166702:-;NM_001166703:-;NM_001166704:-;NM_138362:-;NR_030722:-;XRef=;Frequency=1.00
chrX	CG	SV	55189472	55189887	43	+	.	ID=1479;Type=deletion;Left=chrX:55189472-55189887;Right=chrX:55202293-55202389
chrX	CG	SV	55202293	55202389	43	+	.	ID=1479;Type=deletion;Left=chrX:55189472-55189887;Right=chrX:55202293-55202389
chrX	CG	SV	69363395	69363478	12	.	.	ID=3382;Type=probable-inversion;Left=chrX:69363395-69363527+;Right=chrX:69363399-69363478-;Distance=83;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chrX	CG	SV	69363395	69363527	12	+	.	ID=3382;Type=probable-inversion;Left=chrX:69363395-69363527;Right=chrX:69363399-69363478
chrX	CG	SV	69363399	69363478	12	+	.	ID=3382;Type=probable-inversion;Left=chrX:69363395-69363527;Right=chrX:69363399-69363478
chrX	CG	SV	77008281	77011141	15	.	.	ID=1477;Type=deletion;Left=chrX:77008281-77008836+;Right=chrX:77010767-77011141+;Distance=2486;DiscordantMatePairAlignments=15;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=NM_032121:-;RightGenes=NM_032121:-;XRef=rs72063817 (chrX:77008123-77010604);Frequency=0.94
chrX	CG	SV	77008281	77008836	15	+	.	ID=1477;Type=deletion;Left=chrX:77008281-77008836;Right=chrX:77010767-77011141
chrX	CG	SV	77010767	77011141	15	+	.	ID=1477;Type=deletion;Left=chrX:77008281-77008836;Right=chrX:77010767-77011141
chrX	CG	SV	77583513	77584580	86	.	.	ID=1476;Type=deletion;Left=chrX:77583513-77584056+;Right=chrX:77584111-77584580+;Distance=598;DiscordantMatePairAlignments=86;LeftRepeat=Self chain;RightRepeat=HUERS-P1:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	77583513	77584056	86	+	.	ID=1476;Type=deletion;Left=chrX:77583513-77584056;Right=chrX:77584111-77584580
chrX	CG	SV	77584111	77584580	86	+	.	ID=1476;Type=deletion;Left=chrX:77583513-77584056;Right=chrX:77584111-77584580
chrX	CG	SV	78808545	78813034	13	.	.	ID=1475;Type=complex;Left=chrX:78808545-78808852+;Right=chrX:78812727-78813034+;Distance=4182;DiscordantMatePairAlignments=13;LeftRepeat=L1PA16:LINE:L1;Self chain;RightRepeat=L1MA1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chrX	CG	SV	78808545	78808852	13	+	.	ID=1475;Type=complex;Left=chrX:78808545-78808852;Right=chrX:78812727-78813034
chrX	CG	SV	78812727	78813034	13	+	.	ID=1475;Type=complex;Left=chrX:78808545-78808852;Right=chrX:78812727-78813034
chrX	CG	SV	78809769	78813259	10	.	.	ID=11;Type=complex;Left=chrX:78809769-78809881-;Right=chrX:78812735-78813259+;Distance=2854;DiscordantMatePairAlignments=10;LeftRepeat=L1PA16:LINE:L1;Self chain;RightRepeat=L1MA1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chrX	CG	SV	78809769	78809881	10	-	.	ID=11;Type=complex;Left=chrX:78809769-78809881;Right=chrX:78812735-78813259
chrX	CG	SV	78812735	78813259	10	-	.	ID=11;Type=complex;Left=chrX:78809769-78809881;Right=chrX:78812735-78813259
chrX	CG	SV	80929159	80930142	17	.	.	ID=1473;Type=deletion;Left=chrX:80929159-80929756+;Right=chrX:80929739-80930142+;Distance=580;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;THE1B-int:LTR:MaLR;RightRepeat=Self chain;THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	80929159	80929756	17	+	.	ID=1473;Type=deletion;Left=chrX:80929159-80929756;Right=chrX:80929739-80930142
chrX	CG	SV	80929739	80930142	17	+	.	ID=1473;Type=deletion;Left=chrX:80929159-80929756;Right=chrX:80929739-80930142
chrX	CG	SV	80983309	80989789	43	.	.	ID=1472;Type=deletion;Left=chrX:80983309-80983880+;Right=chrX:80989360-80989789+;Distance=6051;DiscordantMatePairAlignments=43;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=L1MC3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	80983309	80983880	43	+	.	ID=1472;Type=deletion;Left=chrX:80983309-80983880;Right=chrX:80989360-80989789
chrX	CG	SV	80989360	80989789	43	+	.	ID=1472;Type=deletion;Left=chrX:80983309-80983880;Right=chrX:80989360-80989789
chrX	CG	SV	85491835	85496966	18	.	.	ID=1470;Type=deletion;Left=chrX:85491835-85492429+;Right=chrX:85496527-85496966+;Distance=4692;DiscordantMatePairAlignments=18;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=(CAAAA)n:Simple_repeat:Simple_repeat;Self chain;Tandem AATAA;LeftGenes=NM_001139514:+;NM_001139515:+;NM_053281:+;RightGenes=NM_001139514:+;NM_001139515:+;NM_053281:+;XRef=rs67983647 (chrX:85491839-85496531);Frequency=0.88
chrX	CG	SV	85491835	85492429	18	+	.	ID=1470;Type=deletion;Left=chrX:85491835-85492429;Right=chrX:85496527-85496966
chrX	CG	SV	85496527	85496966	18	+	.	ID=1470;Type=deletion;Left=chrX:85491835-85492429;Right=chrX:85496527-85496966
chrX	CG	SV	89465022	89467539	30	.	.	ID=1466;Type=deletion;Left=chrX:89465022-89465474+;Right=chrX:89467036-89467539+;Distance=2014;DiscordantMatePairAlignments=30;LeftRepeat=MLT-int:LTR:MaLR;SegDup;Self chain;RightRepeat=L1MB3:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chrX	CG	SV	89465022	89465474	30	+	.	ID=1466;Type=deletion;Left=chrX:89465022-89465474;Right=chrX:89467036-89467539
chrX	CG	SV	89467036	89467539	30	+	.	ID=1466;Type=deletion;Left=chrX:89465022-89465474;Right=chrX:89467036-89467539
chrX	CG	SV	90170015	90171361	190	.	.	ID=1465;Type=deletion;Left=chrX:90170015-90170528+;Right=chrX:90170742-90171361+;Distance=727;DiscordantMatePairAlignments=190;LeftRepeat=LTR9B:LTR:ERV1;SegDup;Self chain;RightRepeat=L1MA9:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chrX	CG	SV	90170015	90170528	190	+	.	ID=1465;Type=deletion;Left=chrX:90170015-90170528;Right=chrX:90170742-90171361
chrX	CG	SV	90170742	90171361	190	+	.	ID=1465;Type=deletion;Left=chrX:90170015-90170528;Right=chrX:90170742-90171361
chrX	CG	SV	94937503	94938577	25	.	.	ID=1464;Type=deletion;Left=chrX:94937503-94938087+;Right=chrX:94938136-94938577+;Distance=633;DiscordantMatePairAlignments=25;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs72179039 (chrX:94937503-94938136);Frequency=0.88
chrX	CG	SV	94937503	94938087	25	+	.	ID=1464;Type=deletion;Left=chrX:94937503-94938087;Right=chrX:94938136-94938577
chrX	CG	SV	94938136	94938577	25	+	.	ID=1464;Type=deletion;Left=chrX:94937503-94938087;Right=chrX:94938136-94938577
chrX	CG	SV	112995078	113013072	44	.	.	ID=10;Type=probable-inversion;Left=chrX:112995078-112995499-;Right=chrX:113012571-113013072+;Distance=17072;DiscordantMatePairAlignments=44;LeftRepeat=L1ME1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	112995078	112995499	44	-	.	ID=10;Type=probable-inversion;Left=chrX:112995078-112995499;Right=chrX:113012571-113013072
chrX	CG	SV	113012571	113013072	44	-	.	ID=10;Type=probable-inversion;Left=chrX:112995078-112995499;Right=chrX:113012571-113013072
chrX	CG	SV	114448780	114450979	12	.	.	ID=1462;Type=deletion;Left=chrX:114448780-114449292+;Right=chrX:114450769-114450979+;Distance=1989;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L1MB2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chrX	CG	SV	114448780	114449292	12	+	.	ID=1462;Type=deletion;Left=chrX:114448780-114449292;Right=chrX:114450769-114450979
chrX	CG	SV	114450769	114450979	12	+	.	ID=1462;Type=deletion;Left=chrX:114448780-114449292;Right=chrX:114450769-114450979
chrX	CG	SV	117905654	117908314	29	.	.	ID=1460;Type=deletion;Left=chrX:117905654-117906165+;Right=chrX:117907917-117908314+;Distance=2263;DiscordantMatePairAlignments=29;LeftRepeat=HERVP71A:LTR:ERV1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	117905654	117906165	29	+	.	ID=1460;Type=deletion;Left=chrX:117905654-117906165;Right=chrX:117907917-117908314
chrX	CG	SV	117907917	117908314	29	+	.	ID=1460;Type=deletion;Left=chrX:117905654-117906165;Right=chrX:117907917-117908314
chrX	CG	SV	118758268	118761235	16	.	.	ID=1459;Type=deletion;Left=chrX:118758268-118758751+;Right=chrX:118760865-118761235+;Distance=2597;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	118758268	118758751	16	+	.	ID=1459;Type=deletion;Left=chrX:118758268-118758751;Right=chrX:118760865-118761235
chrX	CG	SV	118760865	118761235	16	+	.	ID=1459;Type=deletion;Left=chrX:118758268-118758751;Right=chrX:118760865-118761235
chrX	CG	SV	130832975	130836403	42	.	.	ID=1456;Type=deletion;Left=chrX:130832975-130833287+;Right=chrX:130836311-130836403+;Distance=3336;DiscordantMatePairAlignments=42;LeftRepeat=AluSp:SINE:Alu;Self chain;RightRepeat=MER70-int:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chrX	CG	SV	130832975	130833287	42	+	.	ID=1456;Type=deletion;Left=chrX:130832975-130833287;Right=chrX:130836311-130836403
chrX	CG	SV	130836311	130836403	42	+	.	ID=1456;Type=deletion;Left=chrX:130832975-130833287;Right=chrX:130836311-130836403
chrX	CG	SV	131220905	131221967	27	.	.	ID=9;Type=probable-inversion;Left=chrX:131220905-131221272-;Right=chrX:131221878-131221967+;Distance=606;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chrX	CG	SV	131220905	131221272	27	-	.	ID=9;Type=probable-inversion;Left=chrX:131220905-131221272;Right=chrX:131221878-131221967
chrX	CG	SV	131221878	131221967	27	-	.	ID=9;Type=probable-inversion;Left=chrX:131220905-131221272;Right=chrX:131221878-131221967
chrX	CG	SV	134985665	134986651	16	.	.	ID=1454;Type=deletion;Left=chrX:134985665-134986228+;Right=chrX:134985996-134986651+;Distance=331;DiscordantMatePairAlignments=16;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs67779071 (chrX:134985665-134985996);Frequency=1.00
chrX	CG	SV	134985665	134986228	16	+	.	ID=1454;Type=deletion;Left=chrX:134985665-134986228;Right=chrX:134985996-134986651
chrX	CG	SV	134985996	134986651	16	+	.	ID=1454;Type=deletion;Left=chrX:134985665-134986228;Right=chrX:134985996-134986651
chrX	CG	SV	138984751	139048563	12	.	.	ID=586;Type=tandem-duplication;Left=chrX:138984751-138985349-;Right=chrX:139048315-139048563-;Distance=63214;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	138984751	138985349	12	-	.	ID=586;Type=tandem-duplication;Left=chrX:138984751-138985349;Right=chrX:139048315-139048563
chrX	CG	SV	139048315	139048563	12	-	.	ID=586;Type=tandem-duplication;Left=chrX:138984751-138985349;Right=chrX:139048315-139048563
chrX	CG	SV	144229769	144232697	58	.	.	ID=1452;Type=deletion;Left=chrX:144229769-144230291+;Right=chrX:144232200-144232697+;Distance=2431;DiscordantMatePairAlignments=58;LeftRepeat=L1M1:LINE:L1;RightRepeat=MSTA:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	144229769	144230291	58	+	.	ID=1452;Type=deletion;Left=chrX:144229769-144230291;Right=chrX:144232200-144232697
chrX	CG	SV	144232200	144232697	58	+	.	ID=1452;Type=deletion;Left=chrX:144229769-144230291;Right=chrX:144232200-144232697
chrX	CG	SV	147317388	147319218	148	.	.	ID=1450;Type=deletion;Left=chrX:147317388-147318034+;Right=chrX:147318927-147319218+;Distance=1539;DiscordantMatePairAlignments=148;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs68151473 (chrX:147317390-147318927);Frequency=0.82
chrX	CG	SV	147317388	147318034	148	+	.	ID=1450;Type=deletion;Left=chrX:147317388-147318034;Right=chrX:147318927-147319218
chrX	CG	SV	147318927	147319218	148	+	.	ID=1450;Type=deletion;Left=chrX:147317388-147318034;Right=chrX:147318927-147319218
chrX	CG	SV	154139109	154140730	75	.	.	ID=1449;Type=deletion;Left=chrX:154139109-154139597+;Right=chrX:154140140-154140730+;Distance=1031;DiscordantMatePairAlignments=75;LeftRepeat=;RightRepeat=CT-rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	154139109	154139597	75	+	.	ID=1449;Type=deletion;Left=chrX:154139109-154139597;Right=chrX:154140140-154140730
chrX	CG	SV	154140140	154140730	75	+	.	ID=1449;Type=deletion;Left=chrX:154139109-154139597;Right=chrX:154140140-154140730
chrX	CG	SV	154571654	154575501	12	.	.	ID=1448;Type=deletion;Left=chrX:154571654-154571876+;Right=chrX:154574919-154575501+;Distance=3265;DiscordantMatePairAlignments=12;LeftRepeat=L1PA10:LINE:L1;RightRepeat=L1MA4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	154571654	154571876	12	+	.	ID=1448;Type=deletion;Left=chrX:154571654-154571876;Right=chrX:154574919-154575501
chrX	CG	SV	154574919	154575501	12	+	.	ID=1448;Type=deletion;Left=chrX:154571654-154571876;Right=chrX:154574919-154575501
chrM	CG	SV	67	16497	15	.	.	ID=584;Type=tandem-duplication;Left=chrM:67-421-;Right=chrM:15879-16497-;Distance=16076;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chrM	CG	SV	67	421	15	-	.	ID=584;Type=tandem-duplication;Left=chrM:67-421;Right=chrM:15879-16497
chrM	CG	SV	15879	16497	15	-	.	ID=584;Type=tandem-duplication;Left=chrM:67-421;Right=chrM:15879-16497