chr1	CG	SV	815593	5649595	20	.	.	ID=1891;Type=complex;Left=chr1:815593-815689-;Right=chr1:5648701-5649595-;Distance=4833906;DiscordantMatePairAlignments=20;LeftRepeat=AluS:SINE:Alu;SegDup;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	815593	815689	20	-	.	ID=1891;Type=complex;Left=chr1:815593-815689;Right=chr1:5648701-5649595
chr1	CG	SV	5648701	5649595	20	-	.	ID=1891;Type=complex;Left=chr1:815593-815689;Right=chr1:5648701-5649595
chr1	CG	SV	816028	5650228	10	.	.	ID=4636;Type=complex;Left=chr1:816028-816344+;Right=chr1:5649936-5650228+;Distance=4833908;DiscordantMatePairAlignments=10;LeftRepeat=LTR41:LTR:ERVL;SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	816028	816344	10	+	.	ID=4636;Type=complex;Left=chr1:816028-816344;Right=chr1:5649936-5650228
chr1	CG	SV	5649936	5650228	10	+	.	ID=4636;Type=complex;Left=chr1:816028-816344;Right=chr1:5649936-5650228
chr1	CG	SV	816176	5651101	21	.	.	ID=4635;Type=complex;Left=chr1:816176-816436+;Right=chr1:5650842-5651101+;Distance=4834666;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 100;Tandem period 34;Tandem period 66;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	816176	816436	21	+	.	ID=4635;Type=complex;Left=chr1:816176-816436;Right=chr1:5650842-5651101
chr1	CG	SV	5650842	5651101	21	+	.	ID=4635;Type=complex;Left=chr1:816176-816436;Right=chr1:5650842-5651101
chr1	CG	SV	859302	860486	15	.	.	ID=4647;Type=deletion;Left=chr1:859302-859619+;Right=chr1:860198-860486+;Distance=896;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem period 28;RightRepeat=Self chain;Tandem period 28;LeftGenes=NM_152486:+;RightGenes=NM_152486:+;XRef=rs70949527 (chr1:859334-860175);Frequency=1.00
chr1	CG	SV	859302	859619	15	+	.	ID=4647;Type=deletion;Left=chr1:859302-859619;Right=chr1:860198-860486
chr1	CG	SV	860198	860486	15	+	.	ID=4647;Type=deletion;Left=chr1:859302-859619;Right=chr1:860198-860486
chr1	CG	SV	953835	954727	36	.	.	ID=4646;Type=deletion;Left=chr1:953835-954457+;Right=chr1:954384-954727+;Distance=549;DiscordantMatePairAlignments=36;LeftRepeat=Self chain;Tandem period 61;RightRepeat=Self chain;Tandem period 61;LeftGenes=NM_198576:+;RightGenes=NM_198576:+;XRef=;Frequency=0.29
chr1	CG	SV	953835	954457	36	+	.	ID=4646;Type=deletion;Left=chr1:953835-954457;Right=chr1:954384-954727
chr1	CG	SV	954384	954727	36	+	.	ID=4646;Type=deletion;Left=chr1:953835-954457;Right=chr1:954384-954727
chr1	CG	SV	2908894	2909835	20	.	.	ID=4639;Type=deletion;Left=chr1:2908894-2909267+;Right=chr1:2909229-2909835+;Distance=335;DiscordantMatePairAlignments=20;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	2908894	2909267	20	+	.	ID=4639;Type=deletion;Left=chr1:2908894-2909267;Right=chr1:2909229-2909835
chr1	CG	SV	2909229	2909835	20	+	.	ID=4639;Type=deletion;Left=chr1:2908894-2909267;Right=chr1:2909229-2909835
chr1	CG	SV	3550142	3551059	17	.	.	ID=4638;Type=deletion;Left=chr1:3550142-3550497+;Right=chr1:3550856-3551059+;Distance=714;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;LeftGenes=NM_017818:-;RightGenes=NM_017818:-;XRef=;Frequency=0.18
chr1	CG	SV	3550142	3550497	17	+	.	ID=4638;Type=deletion;Left=chr1:3550142-3550497;Right=chr1:3550856-3551059
chr1	CG	SV	3550856	3551059	17	+	.	ID=4638;Type=deletion;Left=chr1:3550142-3550497;Right=chr1:3550856-3551059
chr1	CG	SV	5639887	5648781	18	.	.	ID=4634;Type=deletion;Left=chr1:5639887-5640086+;Right=chr1:5648482-5648781+;Distance=8595;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr1	CG	SV	5639887	5640086	18	+	.	ID=4634;Type=deletion;Left=chr1:5639887-5640086;Right=chr1:5648482-5648781
chr1	CG	SV	5648482	5648781	18	+	.	ID=4634;Type=deletion;Left=chr1:5639887-5640086;Right=chr1:5648482-5648781
chr1	CG	SV	5650238	5651348	142	.	.	ID=4633;Type=complex;Left=chr1:5650238-5650465+;Right=chr1:5650904-5651348+;Distance=666;DiscordantMatePairAlignments=142;LeftRepeat=Self chain;Tandem period 100;Tandem period 34;Tandem period 66;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	5650238	5650465	142	+	.	ID=4633;Type=complex;Left=chr1:5650238-5650465;Right=chr1:5650904-5651348
chr1	CG	SV	5650904	5651348	142	+	.	ID=4633;Type=complex;Left=chr1:5650238-5650465;Right=chr1:5650904-5651348
chr1	CG	SV	5943284	5949240	79	.	.	ID=4631;Type=deletion;Left=chr1:5943284-5943820+;Right=chr1:5948663-5949240+;Distance=5379;DiscordantMatePairAlignments=79;LeftRepeat=Self chain;RightRepeat=MER72:LTR:ERV1;Self chain;LeftGenes=NM_015102:-;RightGenes=NM_015102:-;XRef=;Frequency=0.00
chr1	CG	SV	5943284	5943820	79	+	.	ID=4631;Type=deletion;Left=chr1:5943284-5943820;Right=chr1:5948663-5949240
chr1	CG	SV	5948663	5949240	79	+	.	ID=4631;Type=deletion;Left=chr1:5943284-5943820;Right=chr1:5948663-5949240
chr1	CG	SV	10482363	10484374	10	.	.	ID=4630;Type=deletion;Left=chr1:10482363-10482776+;Right=chr1:10484217-10484374+;Distance=1854;DiscordantMatePairAlignments=10;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_004565:+;RightGenes=NM_004565:+;XRef=;Frequency=0.00
chr1	CG	SV	10482363	10482776	10	+	.	ID=4630;Type=deletion;Left=chr1:10482363-10482776;Right=chr1:10484217-10484374
chr1	CG	SV	10484217	10484374	10	+	.	ID=4630;Type=deletion;Left=chr1:10482363-10482776;Right=chr1:10484217-10484374
chr1	CG	SV	15422313	25363088	78	.	.	ID=862;Type=probable-inversion;Left=chr1:15422313-15422806-;Right=chr1:25362531-25363088+;Distance=9939725;DiscordantMatePairAlignments=78;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluJ/FLAM:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	15422313	15422806	78	-	.	ID=862;Type=probable-inversion;Left=chr1:15422313-15422806;Right=chr1:25362531-25363088
chr1	CG	SV	25362531	25363088	78	-	.	ID=862;Type=probable-inversion;Left=chr1:15422313-15422806;Right=chr1:25362531-25363088
chr1	CG	SV	15616806	25365520	48	.	.	ID=4913;Type=probable-inversion;Left=chr1:15616806-15617262+;Right=chr1:25365079-25365520-;Distance=9748714;DiscordantMatePairAlignments=48;LeftRepeat=Self chain;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_024329:+;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	15616806	15617262	48	+	.	ID=4913;Type=probable-inversion;Left=chr1:15616806-15617262;Right=chr1:25365079-25365520
chr1	CG	SV	25365079	25365520	48	+	.	ID=4913;Type=probable-inversion;Left=chr1:15616806-15617262;Right=chr1:25365079-25365520
chr1	CG	SV	16923887	232979410	264	.	.	ID=858;Type=probable-inversion;Left=chr1:16923887-16924326-;Right=chr1:232978810-232979410+;Distance=216054484;DiscordantMatePairAlignments=264;LeftRepeat=SegDup;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	16923887	16924326	264	-	.	ID=858;Type=probable-inversion;Left=chr1:16923887-16924326;Right=chr1:232978810-232979410
chr1	CG	SV	232978810	232979410	264	-	.	ID=858;Type=probable-inversion;Left=chr1:16923887-16924326;Right=chr1:232978810-232979410
chr1	CG	SV	25031290	25034375	24	.	.	ID=4627;Type=deletion;Left=chr1:25031290-25031598+;Right=chr1:25034112-25034375+;Distance=2822;DiscordantMatePairAlignments=24;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=NM_013943:+;RightGenes=NM_013943:+;XRef=rs67502578 (chr1:25031274-25034096);Frequency=1.00
chr1	CG	SV	25031290	25031598	24	+	.	ID=4627;Type=deletion;Left=chr1:25031290-25031598;Right=chr1:25034112-25034375
chr1	CG	SV	25034112	25034375	24	+	.	ID=4627;Type=deletion;Left=chr1:25031290-25031598;Right=chr1:25034112-25034375
chr1	CG	SV	27997056	27997266	23	-	.	ID=584;Type=interchromosomal;Left=chr1:27997056-27997266-;Right=chr20:58911843-58912498+;Distance=;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=NM_177424:+;RightGenes=;XRef=;Frequency=0.00
chr20	CG	SV	58911843	58912498	23	-	.	ID=584;Type=interchromosomal;Left=chr1:27997056-27997266-;Right=chr20:58911843-58912498+;Distance=;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=NM_177424:+;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	29593178	30651693	29	.	.	ID=861;Type=probable-inversion;Left=chr1:29593178-29593426-;Right=chr1:30651405-30651693+;Distance=1057979;DiscordantMatePairAlignments=29;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	29593178	29593426	29	-	.	ID=861;Type=probable-inversion;Left=chr1:29593178-29593426;Right=chr1:30651405-30651693
chr1	CG	SV	30651405	30651693	29	-	.	ID=861;Type=probable-inversion;Left=chr1:29593178-29593426;Right=chr1:30651405-30651693
chr1	CG	SV	31743939	31744450	12	.	.	ID=859;Type=probable-inversion;Left=chr1:31743939-31744128-;Right=chr1:31744235-31744450+;Distance=107;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	31743939	31744128	12	-	.	ID=859;Type=probable-inversion;Left=chr1:31743939-31744128;Right=chr1:31744235-31744450
chr1	CG	SV	31744235	31744450	12	-	.	ID=859;Type=probable-inversion;Left=chr1:31743939-31744128;Right=chr1:31744235-31744450
chr1	CG	SV	32965913	32968719	38	.	.	ID=1887;Type=tandem-duplication;Left=chr1:32965913-32966450-;Right=chr1:32968320-32968719-;Distance=2269;DiscordantMatePairAlignments=38;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSp:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	32965913	32966450	38	-	.	ID=1887;Type=tandem-duplication;Left=chr1:32965913-32966450;Right=chr1:32968320-32968719
chr1	CG	SV	32968320	32968719	38	-	.	ID=1887;Type=tandem-duplication;Left=chr1:32965913-32966450;Right=chr1:32968320-32968719
chr1	CG	SV	43831883	43832473	72	.	.	ID=4911;Type=probable-inversion;Left=chr1:43831883-43832423+;Right=chr1:43832033-43832473-;Distance=590;DiscordantMatePairAlignments=72;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_002840:+;NM_130440:+;RightGenes=NM_002840:+;NM_130440:+;XRef=;Frequency=0.94
chr1	CG	SV	43831883	43832423	72	+	.	ID=4911;Type=probable-inversion;Left=chr1:43831883-43832423;Right=chr1:43832033-43832473
chr1	CG	SV	43832033	43832473	72	+	.	ID=4911;Type=probable-inversion;Left=chr1:43831883-43832423;Right=chr1:43832033-43832473
chr1	CG	SV	56173881	56174753	15	.	.	ID=4619;Type=deletion;Left=chr1:56173881-56174359+;Right=chr1:56174202-56174753+;Distance=321;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10525686 (chr1:56173881-56174202);Frequency=1.00
chr1	CG	SV	56173881	56174359	15	+	.	ID=4619;Type=deletion;Left=chr1:56173881-56174359;Right=chr1:56174202-56174753
chr1	CG	SV	56174202	56174753	15	+	.	ID=4619;Type=deletion;Left=chr1:56173881-56174359;Right=chr1:56174202-56174753
chr1	CG	SV	56603701	56607947	123	.	.	ID=4618;Type=deletion;Left=chr1:56603701-56604238+;Right=chr1:56607556-56607947+;Distance=3855;DiscordantMatePairAlignments=123;LeftRepeat=L1MC4a:LINE:L1;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr1	CG	SV	56603701	56604238	123	+	.	ID=4618;Type=deletion;Left=chr1:56603701-56604238;Right=chr1:56607556-56607947
chr1	CG	SV	56607556	56607947	123	+	.	ID=4618;Type=deletion;Left=chr1:56603701-56604238;Right=chr1:56607556-56607947
chr1	CG	SV	56768293	56768934	96	.	.	ID=1884;Type=tandem-duplication;Left=chr1:56768293-56768620-;Right=chr1:56768589-56768934-;Distance=314;DiscordantMatePairAlignments=96;LeftRepeat=;RightRepeat=;LeftGenes=NM_003713:-;NM_177414:-;RightGenes=NM_003713:-;NM_177414:-;XRef=;Frequency=0.71
chr1	CG	SV	56768293	56768620	96	-	.	ID=1884;Type=tandem-duplication;Left=chr1:56768293-56768620;Right=chr1:56768589-56768934
chr1	CG	SV	56768589	56768934	96	-	.	ID=1884;Type=tandem-duplication;Left=chr1:56768293-56768620;Right=chr1:56768589-56768934
chr1	CG	SV	58516501	58517930	148	.	.	ID=4615;Type=deletion;Left=chr1:58516501-58517049+;Right=chr1:58517414-58517930+;Distance=913;DiscordantMatePairAlignments=148;LeftRepeat=THE1D:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67857551 (chr1:58516497-58517410);Frequency=1.00
chr1	CG	SV	58516501	58517049	148	+	.	ID=4615;Type=deletion;Left=chr1:58516501-58517049;Right=chr1:58517414-58517930
chr1	CG	SV	58517414	58517930	148	+	.	ID=4615;Type=deletion;Left=chr1:58516501-58517049;Right=chr1:58517414-58517930
chr1	CG	SV	62163190	62164038	13	.	.	ID=4610;Type=deletion;Left=chr1:62163190-62163714+;Right=chr1:62163539-62164038+;Distance=349;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_176877:+;RightGenes=NM_176877:+;XRef=rs6143236 (chr1:62163174-62163523);Frequency=1.00
chr1	CG	SV	62163190	62163714	13	+	.	ID=4610;Type=deletion;Left=chr1:62163190-62163714;Right=chr1:62163539-62164038
chr1	CG	SV	62163539	62164038	13	+	.	ID=4610;Type=deletion;Left=chr1:62163190-62163714;Right=chr1:62163539-62164038
chr1	CG	SV	62924423	62925175	11	.	.	ID=4609;Type=deletion;Left=chr1:62924423-62924911+;Right=chr1:62924762-62925175+;Distance=339;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_033407:-;RightGenes=NM_033407:-;XRef=rs66945421 (chr1:62924407-62924746);Frequency=1.00
chr1	CG	SV	62924423	62924911	11	+	.	ID=4609;Type=deletion;Left=chr1:62924423-62924911;Right=chr1:62924762-62925175
chr1	CG	SV	62924762	62925175	11	+	.	ID=4609;Type=deletion;Left=chr1:62924423-62924911;Right=chr1:62924762-62925175
chr1	CG	SV	63477954	63481223	120	.	.	ID=4608;Type=deletion;Left=chr1:63477954-63478461+;Right=chr1:63480744-63481223+;Distance=2790;DiscordantMatePairAlignments=120;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68164570 (chr1:63477954-63480744);Frequency=0.65
chr1	CG	SV	63477954	63478461	120	+	.	ID=4608;Type=deletion;Left=chr1:63477954-63478461;Right=chr1:63480744-63481223
chr1	CG	SV	63480744	63481223	120	+	.	ID=4608;Type=deletion;Left=chr1:63477954-63478461;Right=chr1:63480744-63481223
chr1	CG	SV	67780611	67781738	61	.	.	ID=4607;Type=deletion;Left=chr1:67780611-67781075+;Right=chr1:67781468-67781738+;Distance=857;DiscordantMatePairAlignments=61;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	67780611	67781075	61	+	.	ID=4607;Type=deletion;Left=chr1:67780611-67781075;Right=chr1:67781468-67781738
chr1	CG	SV	67781468	67781738	61	+	.	ID=4607;Type=deletion;Left=chr1:67780611-67781075;Right=chr1:67781468-67781738
chr1	CG	SV	72528284	72537072	65	.	.	ID=4601;Type=deletion;Left=chr1:72528284-72528897+;Right=chr1:72536666-72537072+;Distance=8382;DiscordantMatePairAlignments=65;LeftRepeat=MLT2D:LTR:ERVL;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	72528284	72528897	65	+	.	ID=4601;Type=deletion;Left=chr1:72528284-72528897;Right=chr1:72536666-72537072
chr1	CG	SV	72536666	72537072	65	+	.	ID=4601;Type=deletion;Left=chr1:72528284-72528897;Right=chr1:72536666-72537072
chr1	CG	SV	72538912	72585030	120	.	.	ID=4600;Type=deletion;Left=chr1:72538912-72539389+;Right=chr1:72584428-72585030+;Distance=45516;DiscordantMatePairAlignments=120;LeftRepeat=;RightRepeat=MLT1E3:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	72538912	72539389	120	+	.	ID=4600;Type=deletion;Left=chr1:72538912-72539389;Right=chr1:72584428-72585030
chr1	CG	SV	72584428	72585030	120	+	.	ID=4600;Type=deletion;Left=chr1:72538912-72539389;Right=chr1:72584428-72585030
chr1	CG	SV	77248635	77249313	60	.	.	ID=1880;Type=tandem-duplication;Left=chr1:77248635-77248983-;Right=chr1:77248967-77249313-;Distance=330;DiscordantMatePairAlignments=60;LeftRepeat=;RightRepeat=;LeftGenes=NM_030965:+;RightGenes=NM_030965:+;XRef=;Frequency=0.18
chr1	CG	SV	77248635	77248983	60	-	.	ID=1880;Type=tandem-duplication;Left=chr1:77248635-77248983;Right=chr1:77248967-77249313
chr1	CG	SV	77248967	77249313	60	-	.	ID=1880;Type=tandem-duplication;Left=chr1:77248635-77248983;Right=chr1:77248967-77249313
chr1	CG	SV	80567002	80568223	35	.	.	ID=856;Type=probable-inversion;Left=chr1:80567002-80567211-;Right=chr1:80567701-80568223+;Distance=490;DiscordantMatePairAlignments=35;LeftRepeat=L1MC:LINE:L1;RightRepeat=(TA)n:Simple_repeat:Simple_repeat;Tandem AC;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	80567002	80567211	35	-	.	ID=856;Type=probable-inversion;Left=chr1:80567002-80567211;Right=chr1:80567701-80568223
chr1	CG	SV	80567701	80568223	35	-	.	ID=856;Type=probable-inversion;Left=chr1:80567002-80567211;Right=chr1:80567701-80568223
chr1	CG	SV	81177360	81183997	38	.	.	ID=4595;Type=deletion;Left=chr1:81177360-81177854+;Right=chr1:81183551-81183997+;Distance=6191;DiscordantMatePairAlignments=38;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=MSTD:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	81177360	81177854	38	+	.	ID=4595;Type=deletion;Left=chr1:81177360-81177854;Right=chr1:81183551-81183997
chr1	CG	SV	81183551	81183997	38	+	.	ID=4595;Type=deletion;Left=chr1:81177360-81177854;Right=chr1:81183551-81183997
chr1	CG	SV	81432939	81434143	52	.	.	ID=4910;Type=probable-inversion;Left=chr1:81432939-81433345+;Right=chr1:81433957-81434143-;Distance=1204;DiscordantMatePairAlignments=52;LeftRepeat=;RightRepeat=L1MD3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr1	CG	SV	81432939	81433345	52	+	.	ID=4910;Type=probable-inversion;Left=chr1:81432939-81433345;Right=chr1:81433957-81434143
chr1	CG	SV	81433957	81434143	52	+	.	ID=4910;Type=probable-inversion;Left=chr1:81432939-81433345;Right=chr1:81433957-81434143
chr1	CG	SV	82898564	82900692	83	.	.	ID=4593;Type=deletion;Left=chr1:82898564-82898945+;Right=chr1:82900175-82900692+;Distance=1611;DiscordantMatePairAlignments=83;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70959281 (chr1:82898546-82900157);Frequency=1.00
chr1	CG	SV	82898564	82898945	83	+	.	ID=4593;Type=deletion;Left=chr1:82898564-82898945;Right=chr1:82900175-82900692
chr1	CG	SV	82900175	82900692	83	+	.	ID=4593;Type=deletion;Left=chr1:82898564-82898945;Right=chr1:82900175-82900692
chr1	CG	SV	85521222	85522013	21	.	.	ID=4590;Type=deletion;Left=chr1:85521222-85521690+;Right=chr1:85521552-85522013+;Distance=330;DiscordantMatePairAlignments=21;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67084614 (chr1:85521208-85521538);Frequency=0.94
chr1	CG	SV	85521222	85521690	21	+	.	ID=4590;Type=deletion;Left=chr1:85521222-85521690;Right=chr1:85521552-85522013
chr1	CG	SV	85521552	85522013	21	+	.	ID=4590;Type=deletion;Left=chr1:85521222-85521690;Right=chr1:85521552-85522013
chr1	CG	SV	86173439	86177573	73	.	.	ID=4589;Type=deletion;Left=chr1:86173439-86173888+;Right=chr1:86177126-86177573+;Distance=3687;DiscordantMatePairAlignments=73;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=LTR16A:LTR:ERVL;Self chain;LeftGenes=NM_152890:-;RightGenes=NM_152890:-;XRef=;Frequency=0.12
chr1	CG	SV	86173439	86173888	73	+	.	ID=4589;Type=deletion;Left=chr1:86173439-86173888;Right=chr1:86177126-86177573
chr1	CG	SV	86177126	86177573	73	+	.	ID=4589;Type=deletion;Left=chr1:86173439-86173888;Right=chr1:86177126-86177573
chr1	CG	SV	87689140	87689927	19	.	.	ID=1879;Type=tandem-duplication;Left=chr1:87689140-87689469-;Right=chr1:87689558-87689927-;Distance=458;DiscordantMatePairAlignments=19;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr1	CG	SV	87689140	87689469	19	-	.	ID=1879;Type=tandem-duplication;Left=chr1:87689140-87689469;Right=chr1:87689558-87689927
chr1	CG	SV	87689558	87689927	19	-	.	ID=1879;Type=tandem-duplication;Left=chr1:87689140-87689469;Right=chr1:87689558-87689927
chr1	CG	SV	89371762	89425222	11	.	.	ID=4586;Type=deletion;Left=chr1:89371762-89371955+;Right=chr1:89424837-89425222+;Distance=53075;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_207398:-;RightGenes=NM_052941:-;XRef=;Frequency=0.35
chr1	CG	SV	89371762	89371955	11	+	.	ID=4586;Type=deletion;Left=chr1:89371762-89371955;Right=chr1:89424837-89425222
chr1	CG	SV	89424837	89425222	11	+	.	ID=4586;Type=deletion;Left=chr1:89371762-89371955;Right=chr1:89424837-89425222
chr1	CG	SV	91686699	91687514	19	.	.	ID=4585;Type=deletion;Left=chr1:91686699-91687034+;Right=chr1:91687154-91687514+;Distance=455;DiscordantMatePairAlignments=19;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72186914 (chr1:91686699-91687153);Frequency=1.00
chr1	CG	SV	91686699	91687034	19	+	.	ID=4585;Type=deletion;Left=chr1:91686699-91687034;Right=chr1:91687154-91687514
chr1	CG	SV	91687154	91687514	19	+	.	ID=4585;Type=deletion;Left=chr1:91686699-91687034;Right=chr1:91687154-91687514
chr1	CG	SV	93034666	93035454	11	.	.	ID=854;Type=probable-inversion;Left=chr1:93034666-93034805-;Right=chr1:93035056-93035454+;Distance=251;DiscordantMatePairAlignments=11;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	93034666	93034805	11	-	.	ID=854;Type=probable-inversion;Left=chr1:93034666-93034805;Right=chr1:93035056-93035454
chr1	CG	SV	93035056	93035454	11	-	.	ID=854;Type=probable-inversion;Left=chr1:93034666-93034805;Right=chr1:93035056-93035454
chr1	CG	SV	94060963	94064375	207	.	.	ID=4580;Type=deletion;Left=chr1:94060963-94061353+;Right=chr1:94063847-94064375+;Distance=2884;DiscordantMatePairAlignments=207;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68045023 (chr1:94060963-94063847);Frequency=0.82
chr1	CG	SV	94060963	94061353	207	+	.	ID=4580;Type=deletion;Left=chr1:94060963-94061353;Right=chr1:94063847-94064375
chr1	CG	SV	94063847	94064375	207	+	.	ID=4580;Type=deletion;Left=chr1:94060963-94061353;Right=chr1:94063847-94064375
chr1	CG	SV	104244722	104245702	37	.	.	ID=4577;Type=deletion;Left=chr1:104244722-104245163+;Right=chr1:104245248-104245702+;Distance=526;DiscordantMatePairAlignments=37;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66586618 (chr1:104244722-104245248);Frequency=0.76
chr1	CG	SV	104244722	104245163	37	+	.	ID=4577;Type=deletion;Left=chr1:104244722-104245163;Right=chr1:104245248-104245702
chr1	CG	SV	104245248	104245702	37	+	.	ID=4577;Type=deletion;Left=chr1:104244722-104245163;Right=chr1:104245248-104245702
chr1	CG	SV	109988740	109993254	12	.	.	ID=4574;Type=deletion;Left=chr1:109988740-109989146+;Right=chr1:109992972-109993254+;Distance=4232;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr1	CG	SV	109988740	109989146	12	+	.	ID=4574;Type=deletion;Left=chr1:109988740-109989146;Right=chr1:109992972-109993254
chr1	CG	SV	109992972	109993254	12	+	.	ID=4574;Type=deletion;Left=chr1:109988740-109989146;Right=chr1:109992972-109993254
chr1	CG	SV	112493315	112506653	71	.	.	ID=4573;Type=deletion;Left=chr1:112493315-112493800+;Right=chr1:112506228-112506653+;Distance=12913;DiscordantMatePairAlignments=71;LeftRepeat=MLT1B-int:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	112493315	112493800	71	+	.	ID=4573;Type=deletion;Left=chr1:112493315-112493800;Right=chr1:112506228-112506653
chr1	CG	SV	112506228	112506653	71	+	.	ID=4573;Type=deletion;Left=chr1:112493315-112493800;Right=chr1:112506228-112506653
chr1	CG	SV	114447401	114456462	36	.	.	ID=853;Type=distal-duplication;Left=chr1:114447401-114447477-;Right=chr1:114455894-114456462+;Distance=8417;DiscordantMatePairAlignments=36;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_205848:-;RightGenes=NM_205848:-;XRef=;Frequency=0.76
chr1	CG	SV	114447401	114447477	36	-	.	ID=853;Type=distal-duplication;Left=chr1:114447401-114447477;Right=chr1:114455894-114456462
chr1	CG	SV	114455894	114456462	36	-	.	ID=853;Type=distal-duplication;Left=chr1:114447401-114447477;Right=chr1:114455894-114456462
chr1	CG	SV	114447553	114455872	26	.	.	ID=4905;Type=distal-duplication;Left=chr1:114447553-114447634+;Right=chr1:114455256-114455872-;Distance=8319;DiscordantMatePairAlignments=26;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_205848:-;RightGenes=NM_205848:-;XRef=;Frequency=0.76
chr1	CG	SV	114447553	114447634	26	+	.	ID=4905;Type=distal-duplication;Left=chr1:114447553-114447634;Right=chr1:114455256-114455872
chr1	CG	SV	114455256	114455872	26	+	.	ID=4905;Type=distal-duplication;Left=chr1:114447553-114447634;Right=chr1:114455256-114455872
chr1	CG	SV	143605642	143606892	33	.	.	ID=4080;Type=deletion;Left=chr1:143605642-143606085+;Right=chr1:143606640-143606892+;Distance=998;DiscordantMatePairAlignments=33;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;RightGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;XRef=rs68115952 (chr1:143605449-143606445);Frequency=1.00
chr1	CG	SV	143605642	143606085	33	+	.	ID=4080;Type=deletion;Left=chr1:143605642-143606085;Right=chr1:143606640-143606892
chr1	CG	SV	143606640	143606892	33	+	.	ID=4080;Type=deletion;Left=chr1:143605642-143606085;Right=chr1:143606640-143606892
chr1	CG	SV	143607654	143618406	16	.	.	ID=4079;Type=complex;Left=chr1:143607654-143607876+;Right=chr1:143618166-143618406+;Distance=10512;DiscordantMatePairAlignments=16;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;RightGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;XRef=;Frequency=1.00
chr1	CG	SV	143607654	143607876	16	+	.	ID=4079;Type=complex;Left=chr1:143607654-143607876;Right=chr1:143618166-143618406
chr1	CG	SV	143618166	143618406	16	+	.	ID=4079;Type=complex;Left=chr1:143607654-143607876;Right=chr1:143618166-143618406
chr1	CG	SV	143612537	143618479	14	.	.	ID=4078;Type=complex;Left=chr1:143612537-143612674+;Right=chr1:143618166-143618479+;Distance=5629;DiscordantMatePairAlignments=14;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;RightGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;XRef=rs67558530 (chr1:143612537-143618166);Frequency=0.41
chr1	CG	SV	143612537	143612674	14	+	.	ID=4078;Type=complex;Left=chr1:143612537-143612674;Right=chr1:143618166-143618479
chr1	CG	SV	143618166	143618479	14	+	.	ID=4078;Type=complex;Left=chr1:143612537-143612674;Right=chr1:143618166-143618479
chr1	CG	SV	143804305	143808914	495	.	.	ID=4076;Type=deletion;Left=chr1:143804305-143804922+;Right=chr1:143808440-143808914+;Distance=4135;DiscordantMatePairAlignments=495;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_004892:+;XRef=rs67330508 (chr1:143804305-143808439);Frequency=1.00
chr1	CG	SV	143804305	143804922	495	+	.	ID=4076;Type=deletion;Left=chr1:143804305-143804922;Right=chr1:143808440-143808914
chr1	CG	SV	143808440	143808914	495	+	.	ID=4076;Type=deletion;Left=chr1:143804305-143804922;Right=chr1:143808440-143808914
chr1	CG	SV	148200908	148201319	60	+	.	ID=4864;Type=interchromosomal;Left=chr1:148200908-148201319+;Right=chr5:1616038-1616581-;Distance=;DiscordantMatePairAlignments=60;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_020205:-;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	1616038	1616581	60	+	.	ID=4864;Type=interchromosomal;Left=chr1:148200908-148201319+;Right=chr5:1616038-1616581-;Distance=;DiscordantMatePairAlignments=60;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_020205:-;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	151482637	151483427	10	.	.	ID=4074;Type=deletion;Left=chr1:151482637-151483017+;Right=chr1:151483295-151483427+;Distance=658;DiscordantMatePairAlignments=10;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGG;Tandem period 94;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGG;Tandem period 94;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr1	CG	SV	151482637	151483017	10	+	.	ID=4074;Type=deletion;Left=chr1:151482637-151483017;Right=chr1:151483295-151483427
chr1	CG	SV	151483295	151483427	10	+	.	ID=4074;Type=deletion;Left=chr1:151482637-151483017;Right=chr1:151483295-151483427
chr1	CG	SV	154110985	154111836	17	.	.	ID=4073;Type=deletion;Left=chr1:154110985-154111603+;Right=chr1:154111640-154111836+;Distance=655;DiscordantMatePairAlignments=17;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_152280:+;RightGenes=NM_152280:+;XRef=rs72087925 (chr1:154110887-154111635);Frequency=0.35
chr1	CG	SV	154110985	154111603	17	+	.	ID=4073;Type=deletion;Left=chr1:154110985-154111603;Right=chr1:154111640-154111836
chr1	CG	SV	154111640	154111836	17	+	.	ID=4073;Type=deletion;Left=chr1:154110985-154111603;Right=chr1:154111640-154111836
chr1	CG	SV	154793338	154796115	271	.	.	ID=4072;Type=deletion;Left=chr1:154793338-154793960+;Right=chr1:154795569-154796115+;Distance=2231;DiscordantMatePairAlignments=271;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_178229:-;RightGenes=NM_178229:-;XRef=rs68110015 (chr1:154793347-154795578);Frequency=1.00
chr1	CG	SV	154793338	154793960	271	+	.	ID=4072;Type=deletion;Left=chr1:154793338-154793960;Right=chr1:154795569-154796115
chr1	CG	SV	154795569	154796115	271	+	.	ID=4072;Type=deletion;Left=chr1:154793338-154793960;Right=chr1:154795569-154796115
chr1	CG	SV	157134157	157137033	24	.	.	ID=4058;Type=deletion;Left=chr1:157134157-157134559+;Right=chr1:157136608-157137033+;Distance=2451;DiscordantMatePairAlignments=24;LeftRepeat=L1MA9:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66519609 (chr1:157134154-157136605);Frequency=1.00
chr1	CG	SV	157134157	157134559	24	+	.	ID=4058;Type=deletion;Left=chr1:157134157-157134559;Right=chr1:157136608-157137033
chr1	CG	SV	157136608	157137033	24	+	.	ID=4058;Type=deletion;Left=chr1:157134157-157134559;Right=chr1:157136608-157137033
chr1	CG	SV	157915332	157916857	60	.	.	ID=4057;Type=deletion;Left=chr1:157915332-157915929+;Right=chr1:157916282-157916857+;Distance=950;DiscordantMatePairAlignments=60;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67706473 (chr1:157915331-157916281);Frequency=0.88
chr1	CG	SV	157915332	157915929	60	+	.	ID=4057;Type=deletion;Left=chr1:157915332-157915929;Right=chr1:157916282-157916857
chr1	CG	SV	157916282	157916857	60	+	.	ID=4057;Type=deletion;Left=chr1:157915332-157915929;Right=chr1:157916282-157916857
chr1	CG	SV	178450469	178450997	16	.	.	ID=4051;Type=deletion;Left=chr1:178450469-178451021+;Right=chr1:178450788-178450997+;Distance=319;DiscordantMatePairAlignments=16;LeftRepeat=AluYh9:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	178450469	178451021	16	+	.	ID=4051;Type=deletion;Left=chr1:178450469-178451021;Right=chr1:178450788-178450997
chr1	CG	SV	178450788	178450997	16	+	.	ID=4051;Type=deletion;Left=chr1:178450469-178451021;Right=chr1:178450788-178450997
chr1	CG	SV	183081366	183087850	86	.	.	ID=4050;Type=deletion;Left=chr1:183081366-183081888+;Right=chr1:183087422-183087850+;Distance=6056;DiscordantMatePairAlignments=86;LeftRepeat=;RightRepeat=;LeftGenes=NM_052966:-;RightGenes=NM_052966:-;XRef=rs67214927 (chr1:183081351-183087407);Frequency=0.59
chr1	CG	SV	183081366	183081888	86	+	.	ID=4050;Type=deletion;Left=chr1:183081366-183081888;Right=chr1:183087422-183087850
chr1	CG	SV	183087422	183087850	86	+	.	ID=4050;Type=deletion;Left=chr1:183081366-183081888;Right=chr1:183087422-183087850
chr1	CG	SV	185731451	185733350	30	.	.	ID=4899;Type=complex;Left=chr1:185731451-185731875+;Right=chr1:185733098-185733350-;Distance=1899;DiscordantMatePairAlignments=30;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185731451	185731875	30	+	.	ID=4899;Type=complex;Left=chr1:185731451-185731875;Right=chr1:185733098-185733350
chr1	CG	SV	185733098	185733350	30	+	.	ID=4899;Type=complex;Left=chr1:185731451-185731875;Right=chr1:185733098-185733350
chr1	CG	SV	185731451	185733546	14	.	.	ID=4049;Type=complex;Left=chr1:185731451-185731545+;Right=chr1:185733347-185733546+;Distance=1896;DiscordantMatePairAlignments=14;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185731451	185731545	14	+	.	ID=4049;Type=complex;Left=chr1:185731451-185731545;Right=chr1:185733347-185733546
chr1	CG	SV	185733347	185733546	14	+	.	ID=4049;Type=complex;Left=chr1:185731451-185731545;Right=chr1:185733347-185733546
chr1	CG	SV	185732845	185733829	65	.	.	ID=843;Type=complex;Left=chr1:185732845-185733098-;Right=chr1:185733355-185733829+;Distance=257;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185732845	185733098	65	-	.	ID=843;Type=complex;Left=chr1:185732845-185733098;Right=chr1:185733355-185733829
chr1	CG	SV	185733355	185733829	65	-	.	ID=843;Type=complex;Left=chr1:185732845-185733098;Right=chr1:185733355-185733829
chr1	CG	SV	186806079	186807245	88	.	.	ID=4047;Type=deletion;Left=chr1:186806079-186806545+;Right=chr1:186806854-186807245+;Distance=775;DiscordantMatePairAlignments=88;LeftRepeat=L1MB7:LINE:L1;RightRepeat=L1MCa:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72255816 (chr1:186806077-186806852);Frequency=1.00
chr1	CG	SV	186806079	186806545	88	+	.	ID=4047;Type=deletion;Left=chr1:186806079-186806545;Right=chr1:186806854-186807245
chr1	CG	SV	186806854	186807245	88	+	.	ID=4047;Type=deletion;Left=chr1:186806079-186806545;Right=chr1:186806854-186807245
chr1	CG	SV	187467473	187468690	17	.	.	ID=4046;Type=deletion;Left=chr1:187467473-187467907+;Right=chr1:187468454-187468690+;Distance=981;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=L1P5:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	187467473	187467907	17	+	.	ID=4046;Type=deletion;Left=chr1:187467473-187467907;Right=chr1:187468454-187468690
chr1	CG	SV	187468454	187468690	17	+	.	ID=4046;Type=deletion;Left=chr1:187467473-187467907;Right=chr1:187468454-187468690
chr1	CG	SV	195767143	195770356	121	.	.	ID=4045;Type=deletion;Left=chr1:195767143-195767683+;Right=chr1:195769906-195770356+;Distance=2763;DiscordantMatePairAlignments=121;LeftRepeat=L1HS:LINE:L1;Tandem T;RightRepeat=;LeftGenes=NM_001142795:-;RightGenes=NM_001142795:-;XRef=rs68029239 (chr1:195767131-195769894);Frequency=1.00
chr1	CG	SV	195767143	195767683	121	+	.	ID=4045;Type=deletion;Left=chr1:195767143-195767683;Right=chr1:195769906-195770356
chr1	CG	SV	195769906	195770356	121	+	.	ID=4045;Type=deletion;Left=chr1:195767143-195767683;Right=chr1:195769906-195770356
chr1	CG	SV	197040372	197042498	96	.	.	ID=4042;Type=deletion;Left=chr1:197040372-197040926+;Right=chr1:197042037-197042498+;Distance=1665;DiscordantMatePairAlignments=96;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs71795251 (chr1:197040372-197042037);Frequency=0.29
chr1	CG	SV	197040372	197040926	96	+	.	ID=4042;Type=deletion;Left=chr1:197040372-197040926;Right=chr1:197042037-197042498
chr1	CG	SV	197042037	197042498	96	+	.	ID=4042;Type=deletion;Left=chr1:197040372-197040926;Right=chr1:197042037-197042498
chr1	CG	SV	197705360	197707220	20	.	.	ID=4041;Type=deletion;Left=chr1:197705360-197705797+;Right=chr1:197706867-197707220+;Distance=1507;DiscordantMatePairAlignments=20;LeftRepeat=MLT1A1:LTR:MaLR;RightRepeat=MLT1A1:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67023442 (chr1:197705349-197706856);Frequency=1.00
chr1	CG	SV	197705360	197705797	20	+	.	ID=4041;Type=deletion;Left=chr1:197705360-197705797;Right=chr1:197706867-197707220
chr1	CG	SV	197706867	197707220	20	+	.	ID=4041;Type=deletion;Left=chr1:197705360-197705797;Right=chr1:197706867-197707220
chr1	CG	SV	203445294	203445416	17	.	.	ID=4897;Type=probable-inversion;Left=chr1:203445294-203445811+;Right=chr1:203445280-203445416-;Distance=122;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_015375:-;NM_199462:-;RightGenes=NM_015375:-;NM_199462:-;XRef=;Frequency=0.88
chr1	CG	SV	203445294	203445811	17	+	.	ID=4897;Type=probable-inversion;Left=chr1:203445294-203445811;Right=chr1:203445280-203445416
chr1	CG	SV	203445280	203445416	17	+	.	ID=4897;Type=probable-inversion;Left=chr1:203445294-203445811;Right=chr1:203445280-203445416
chr1	CG	SV	205358889	205360308	14	.	.	ID=840;Type=complex;Left=chr1:205358889-205358969-;Right=chr1:205359818-205360308+;Distance=849;DiscordantMatePairAlignments=14;LeftRepeat=MLT2F:LTR:ERVL;Self chain;RightRepeat=ERVL-F:LTR:ERVL;Self chain;LeftGenes=NM_000715:+;RightGenes=NM_000715:+;XRef=;Frequency=0.94
chr1	CG	SV	205358889	205358969	14	-	.	ID=840;Type=complex;Left=chr1:205358889-205358969;Right=chr1:205359818-205360308
chr1	CG	SV	205359818	205360308	14	-	.	ID=840;Type=complex;Left=chr1:205358889-205358969;Right=chr1:205359818-205360308
chr1	CG	SV	205358985	205359052	19	.	.	ID=4896;Type=complex;Left=chr1:205358985-205359386+;Right=chr1:205358968-205359052-;Distance=67;DiscordantMatePairAlignments=19;LeftRepeat=MLT2F:LTR:ERVL;Self chain;RightRepeat=MLT2F:LTR:ERVL;Self chain;LeftGenes=NM_000715:+;RightGenes=NM_000715:+;XRef=;Frequency=0.94
chr1	CG	SV	205358985	205359386	19	+	.	ID=4896;Type=complex;Left=chr1:205358985-205359386;Right=chr1:205358968-205359052
chr1	CG	SV	205358968	205359052	19	+	.	ID=4896;Type=complex;Left=chr1:205358985-205359386;Right=chr1:205358968-205359052
chr1	CG	SV	205358985	205360198	56	.	.	ID=4039;Type=complex;Left=chr1:205358985-205359283+;Right=chr1:205359818-205360198+;Distance=833;DiscordantMatePairAlignments=56;LeftRepeat=MLT2F:LTR:ERVL;Self chain;RightRepeat=ERVL-F:LTR:ERVL;Self chain;LeftGenes=NM_000715:+;RightGenes=NM_000715:+;XRef=;Frequency=0.94
chr1	CG	SV	205358985	205359283	56	+	.	ID=4039;Type=complex;Left=chr1:205358985-205359283;Right=chr1:205359818-205360198
chr1	CG	SV	205359818	205360198	56	+	.	ID=4039;Type=complex;Left=chr1:205358985-205359283;Right=chr1:205359818-205360198
chr1	CG	SV	205608647	205612672	45	.	.	ID=4038;Type=deletion;Left=chr1:205608647-205609062+;Right=chr1:205612248-205612672+;Distance=3601;DiscordantMatePairAlignments=45;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66713152 (chr1:205608586-205612187);Frequency=0.59
chr1	CG	SV	205608647	205609062	45	+	.	ID=4038;Type=deletion;Left=chr1:205608647-205609062;Right=chr1:205612248-205612672
chr1	CG	SV	205612248	205612672	45	+	.	ID=4038;Type=deletion;Left=chr1:205608647-205609062;Right=chr1:205612248-205612672
chr1	CG	SV	208144678	208153111	134	.	.	ID=4037;Type=deletion;Left=chr1:208144678-208145127+;Right=chr1:208152600-208153111+;Distance=7922;DiscordantMatePairAlignments=134;LeftRepeat=;RightRepeat=HERVL:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs72202560 (chr1:208144684-208152600);Frequency=0.53
chr1	CG	SV	208144678	208145127	134	+	.	ID=4037;Type=deletion;Left=chr1:208144678-208145127;Right=chr1:208152600-208153111
chr1	CG	SV	208152600	208153111	134	+	.	ID=4037;Type=deletion;Left=chr1:208144678-208145127;Right=chr1:208152600-208153111
chr1	CG	SV	208893708	208894190	11	.	.	ID=1859;Type=tandem-duplication;Left=chr1:208893708-208893848-;Right=chr1:208893906-208894190-;Distance=342;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 14;Tandem period 30;RightRepeat=Self chain;LeftGenes=NM_001122834:+;NM_018194:+;RightGenes=NM_001122834:+;NM_018194:+;XRef=;Frequency=1.00
chr1	CG	SV	208893708	208893848	11	-	.	ID=1859;Type=tandem-duplication;Left=chr1:208893708-208893848;Right=chr1:208893906-208894190
chr1	CG	SV	208893906	208894190	11	-	.	ID=1859;Type=tandem-duplication;Left=chr1:208893708-208893848;Right=chr1:208893906-208894190
chr1	CG	SV	210537776	210539704	49	.	.	ID=4036;Type=deletion;Left=chr1:210537776-210538146+;Right=chr1:210539257-210539704+;Distance=1481;DiscordantMatePairAlignments=49;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_006243:+;RightGenes=NM_006243:+;XRef=rs67798000 (chr1:210537776-210539257);Frequency=0.88
chr1	CG	SV	210537776	210538146	49	+	.	ID=4036;Type=deletion;Left=chr1:210537776-210538146;Right=chr1:210539257-210539704
chr1	CG	SV	210539257	210539704	49	+	.	ID=4036;Type=deletion;Left=chr1:210537776-210538146;Right=chr1:210539257-210539704
chr1	CG	SV	216249125	216255586	36	.	.	ID=4034;Type=deletion;Left=chr1:216249125-216249435+;Right=chr1:216255231-216255586+;Distance=6106;DiscordantMatePairAlignments=36;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	216249125	216249435	36	+	.	ID=4034;Type=deletion;Left=chr1:216249125-216249435;Right=chr1:216255231-216255586
chr1	CG	SV	216255231	216255586	36	+	.	ID=4034;Type=deletion;Left=chr1:216249125-216249435;Right=chr1:216255231-216255586
chr1	CG	SV	220440788	220447414	52	.	.	ID=4029;Type=deletion;Left=chr1:220440788-220441266+;Right=chr1:220447162-220447414+;Distance=6374;DiscordantMatePairAlignments=52;LeftRepeat=AluSg:SINE:Alu;RightRepeat=L1PA17:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	220440788	220441266	52	+	.	ID=4029;Type=deletion;Left=chr1:220440788-220441266;Right=chr1:220447162-220447414
chr1	CG	SV	220447162	220447414	52	+	.	ID=4029;Type=deletion;Left=chr1:220440788-220441266;Right=chr1:220447162-220447414
chr1	CG	SV	222313740	222314703	167	.	.	ID=4027;Type=complex;Left=chr1:222313740-222314316+;Right=chr1:222314216-222314703+;Distance=476;DiscordantMatePairAlignments=167;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67408596 (chr1:222313740-222314216);Frequency=1.00
chr1	CG	SV	222313740	222314316	167	+	.	ID=4027;Type=complex;Left=chr1:222313740-222314316;Right=chr1:222314216-222314703
chr1	CG	SV	222314216	222314703	167	+	.	ID=4027;Type=complex;Left=chr1:222313740-222314316;Right=chr1:222314216-222314703
chr1	CG	SV	222313740	222314612	46	.	.	ID=4028;Type=complex;Left=chr1:222313740-222314196+;Right=chr1:222314216-222314612+;Distance=476;DiscordantMatePairAlignments=46;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67408596 (chr1:222313740-222314216);Frequency=1.00
chr1	CG	SV	222313740	222314196	46	+	.	ID=4028;Type=complex;Left=chr1:222313740-222314196;Right=chr1:222314216-222314612
chr1	CG	SV	222314216	222314612	46	+	.	ID=4028;Type=complex;Left=chr1:222313740-222314196;Right=chr1:222314216-222314612
chr1	CG	SV	222459457	222460421	31	.	.	ID=4025;Type=deletion;Left=chr1:222459457-222459888+;Right=chr1:222459770-222460421+;Distance=313;DiscordantMatePairAlignments=31;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10525121 (chr1:222459457-222459770);Frequency=1.00
chr1	CG	SV	222459457	222459888	31	+	.	ID=4025;Type=deletion;Left=chr1:222459457-222459888;Right=chr1:222459770-222460421
chr1	CG	SV	222459770	222460421	31	+	.	ID=4025;Type=deletion;Left=chr1:222459457-222459888;Right=chr1:222459770-222460421
chr1	CG	SV	224069440	224070221	25	.	.	ID=4023;Type=deletion;Left=chr1:224069440-224069885+;Right=chr1:224069767-224070221+;Distance=327;DiscordantMatePairAlignments=25;LeftRepeat=;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_001136018:+;RightGenes=NM_001136018:+;XRef=;Frequency=0.35
chr1	CG	SV	224069440	224069885	25	+	.	ID=4023;Type=deletion;Left=chr1:224069440-224069885;Right=chr1:224069767-224070221
chr1	CG	SV	224069767	224070221	25	+	.	ID=4023;Type=deletion;Left=chr1:224069440-224069885;Right=chr1:224069767-224070221
chr1	CG	SV	227440011	227440872	13	.	.	ID=4021;Type=deletion;Left=chr1:227440011-227440551+;Right=chr1:227440385-227440872+;Distance=374;DiscordantMatePairAlignments=13;LeftRepeat=L1ME4a:LINE:L1;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71748063 (chr1:227440011-227440385);Frequency=0.59
chr1	CG	SV	227440011	227440551	13	+	.	ID=4021;Type=deletion;Left=chr1:227440011-227440551;Right=chr1:227440385-227440872
chr1	CG	SV	227440385	227440872	13	+	.	ID=4021;Type=deletion;Left=chr1:227440011-227440551;Right=chr1:227440385-227440872
chr1	CG	SV	227879160	227887979	84	.	.	ID=4020;Type=deletion;Left=chr1:227879160-227879335+;Right=chr1:227887463-227887979+;Distance=8303;DiscordantMatePairAlignments=84;LeftRepeat=;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66826980 (chr1:227879160-227887463);Frequency=0.47
chr1	CG	SV	227879160	227879335	84	+	.	ID=4020;Type=deletion;Left=chr1:227879160-227879335;Right=chr1:227887463-227887979
chr1	CG	SV	227887463	227887979	84	+	.	ID=4020;Type=deletion;Left=chr1:227879160-227879335;Right=chr1:227887463-227887979
chr1	CG	SV	228199261	228200974	84	.	.	ID=4019;Type=deletion;Left=chr1:228199261-228199695+;Right=chr1:228200501-228200974+;Distance=1240;DiscordantMatePairAlignments=84;LeftRepeat=AluSc:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr1	CG	SV	228199261	228199695	84	+	.	ID=4019;Type=deletion;Left=chr1:228199261-228199695;Right=chr1:228200501-228200974
chr1	CG	SV	228200501	228200974	84	+	.	ID=4019;Type=deletion;Left=chr1:228199261-228199695;Right=chr1:228200501-228200974
chr1	CG	SV	234121214	234122102	10	.	.	ID=4016;Type=deletion;Left=chr1:234121214-234121633+;Right=chr1:234121552-234122102+;Distance=338;DiscordantMatePairAlignments=10;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68079622 (chr1:234121214-234121552);Frequency=0.88
chr1	CG	SV	234121214	234121633	10	+	.	ID=4016;Type=deletion;Left=chr1:234121214-234121633;Right=chr1:234121552-234122102
chr1	CG	SV	234121552	234122102	10	+	.	ID=4016;Type=deletion;Left=chr1:234121214-234121633;Right=chr1:234121552-234122102
chr1	CG	SV	234615726	234618425	45	.	.	ID=4013;Type=deletion;Left=chr1:234615726-234616108+;Right=chr1:234617969-234618425+;Distance=2243;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67414199 (chr1:234615726-234617969);Frequency=1.00
chr1	CG	SV	234615726	234616108	45	+	.	ID=4013;Type=deletion;Left=chr1:234615726-234616108;Right=chr1:234617969-234618425
chr1	CG	SV	234617969	234618425	45	+	.	ID=4013;Type=deletion;Left=chr1:234615726-234616108;Right=chr1:234617969-234618425
chr1	CG	SV	238707870	238708564	16	.	.	ID=4011;Type=deletion;Left=chr1:238707870-238708386+;Right=chr1:238708272-238708564+;Distance=402;DiscordantMatePairAlignments=16;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72000745 (chr1:238707748-238708150);Frequency=0.76
chr1	CG	SV	238707870	238708386	16	+	.	ID=4011;Type=deletion;Left=chr1:238707870-238708386;Right=chr1:238708272-238708564
chr1	CG	SV	238708272	238708564	16	+	.	ID=4011;Type=deletion;Left=chr1:238707870-238708386;Right=chr1:238708272-238708564
chr1	CG	SV	239702746	243353657	79	.	.	ID=4891;Type=probable-inversion;Left=chr1:239702746-239703160+;Right=chr1:243353148-243353657-;Distance=3650911;DiscordantMatePairAlignments=79;LeftRepeat=L1MC2:LINE:L1;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001143943:+;NR_026586:+;NR_026587:+;XRef=;Frequency=0.00
chr1	CG	SV	239702746	239703160	79	+	.	ID=4891;Type=probable-inversion;Left=chr1:239702746-239703160;Right=chr1:243353148-243353657
chr1	CG	SV	243353148	243353657	79	+	.	ID=4891;Type=probable-inversion;Left=chr1:239702746-239703160;Right=chr1:243353148-243353657
chr1	CG	SV	239843180	239845134	38	.	.	ID=837;Type=probable-inversion;Left=chr1:239843180-239843487-;Right=chr1:239844780-239845134+;Distance=1293;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=Tandem period 45;LeftGenes=NM_014322:-;RightGenes=NM_014322:-;XRef=;Frequency=0.00
chr1	CG	SV	239843180	239843487	38	-	.	ID=837;Type=probable-inversion;Left=chr1:239843180-239843487;Right=chr1:239844780-239845134
chr1	CG	SV	239844780	239845134	38	-	.	ID=837;Type=probable-inversion;Left=chr1:239843180-239843487;Right=chr1:239844780-239845134
chr1	CG	SV	241194419	241196242	41	.	.	ID=4008;Type=deletion;Left=chr1:241194419-241194857+;Right=chr1:241195863-241196242+;Distance=1444;DiscordantMatePairAlignments=41;LeftRepeat=AluJo:SINE:Alu;SegDup;Self chain;RightRepeat=AluSp:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr1	CG	SV	241194419	241194857	41	+	.	ID=4008;Type=deletion;Left=chr1:241194419-241194857;Right=chr1:241195863-241196242
chr1	CG	SV	241195863	241196242	41	+	.	ID=4008;Type=deletion;Left=chr1:241194419-241194857;Right=chr1:241195863-241196242
chr1	CG	SV	241849368	241850855	138	.	.	ID=4007;Type=deletion;Left=chr1:241849368-241849839+;Right=chr1:241850378-241850855+;Distance=1010;DiscordantMatePairAlignments=138;LeftRepeat=L1MA4:LINE:L1;RightRepeat=;LeftGenes=NM_005465:-;NM_181690:-;RightGenes=NM_005465:-;NM_181690:-;XRef=rs72260277 (chr1:241849390-241850386);Frequency=0.94
chr1	CG	SV	241849368	241849839	138	+	.	ID=4007;Type=deletion;Left=chr1:241849368-241849839;Right=chr1:241850378-241850855
chr1	CG	SV	241850378	241850855	138	+	.	ID=4007;Type=deletion;Left=chr1:241849368-241849839;Right=chr1:241850378-241850855
chr1	CG	SV	245917096	245923707	38	.	.	ID=4005;Type=deletion;Left=chr1:245917096-245917515+;Right=chr1:245923149-245923707+;Distance=6053;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72075933 (chr1:245917078-245923131);Frequency=0.94
chr1	CG	SV	245917096	245917515	38	+	.	ID=4005;Type=deletion;Left=chr1:245917096-245917515;Right=chr1:245923149-245923707
chr1	CG	SV	245923149	245923707	38	+	.	ID=4005;Type=deletion;Left=chr1:245917096-245917515;Right=chr1:245923149-245923707
chr2	CG	SV	1337076	1337975	47	.	.	ID=4002;Type=deletion;Left=chr2:1337076-1337544+;Right=chr2:1337523-1337975+;Distance=447;DiscordantMatePairAlignments=47;LeftRepeat=Self chain;Tandem period 106;RightRepeat=MIRb:SINE:MIR;Self chain;Tandem period 115;LeftGenes=NM_018968:+;RightGenes=NM_018968:+;XRef=rs66735644 (chr2:1337076-1337519);Frequency=0.94
chr2	CG	SV	1337076	1337544	47	+	.	ID=4002;Type=deletion;Left=chr2:1337076-1337544;Right=chr2:1337523-1337975
chr2	CG	SV	1337523	1337975	47	+	.	ID=4002;Type=deletion;Left=chr2:1337076-1337544;Right=chr2:1337523-1337975
chr2	CG	SV	1780753	1781499	15	.	.	ID=3999;Type=deletion;Left=chr2:1780753-1781202+;Right=chr2:1781074-1781499+;Distance=321;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem period 29;Tandem period 59;Tandem period 88;RightRepeat=Self chain;LeftGenes=NM_015025:-;RightGenes=NM_015025:-;XRef=rs71915727 (chr2:1780621-1780945);Frequency=0.71
chr2	CG	SV	1780753	1781202	15	+	.	ID=3999;Type=deletion;Left=chr2:1780753-1781202;Right=chr2:1781074-1781499
chr2	CG	SV	1781074	1781499	15	+	.	ID=3999;Type=deletion;Left=chr2:1780753-1781202;Right=chr2:1781074-1781499
chr2	CG	SV	2628405	2628590	10	.	.	ID=1853;Type=tandem-duplication;Left=chr2:2628405-2628509-;Right=chr2:2628518-2628590-;Distance=81;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 36;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr2	CG	SV	2628405	2628509	10	-	.	ID=1853;Type=tandem-duplication;Left=chr2:2628405-2628509;Right=chr2:2628518-2628590
chr2	CG	SV	2628518	2628590	10	-	.	ID=1853;Type=tandem-duplication;Left=chr2:2628405-2628509;Right=chr2:2628518-2628590
chr2	CG	SV	2777781	2778774	120	.	.	ID=3998;Type=deletion;Left=chr2:2777781-2778317+;Right=chr2:2778290-2778774+;Distance=509;DiscordantMatePairAlignments=120;LeftRepeat=Self chain;Tandem period 31;Tandem period 32;Tandem period 63;RightRepeat=Self chain;Tandem period 29;LeftGenes=;RightGenes=;XRef=rs67035310 (chr2:2777781-2778251);Frequency=0.76
chr2	CG	SV	2777781	2778317	120	+	.	ID=3998;Type=deletion;Left=chr2:2777781-2778317;Right=chr2:2778290-2778774
chr2	CG	SV	2778290	2778774	120	+	.	ID=3998;Type=deletion;Left=chr2:2777781-2778317;Right=chr2:2778290-2778774
chr2	CG	SV	3800658	3801679	11	.	.	ID=3997;Type=deletion;Left=chr2:3800658-3800792+;Right=chr2:3801456-3801679+;Distance=798;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 21;RightRepeat=Self chain;Tandem period 21;LeftGenes=;RightGenes=;XRef=rs72441557 (chr2:3800578-3801166);Frequency=0.65
chr2	CG	SV	3800658	3800792	11	+	.	ID=3997;Type=deletion;Left=chr2:3800658-3800792;Right=chr2:3801456-3801679
chr2	CG	SV	3801456	3801679	11	+	.	ID=3997;Type=deletion;Left=chr2:3800658-3800792;Right=chr2:3801456-3801679
chr2	CG	SV	4759185	4765782	61	.	.	ID=3996;Type=deletion;Left=chr2:4759185-4759485+;Right=chr2:4765250-4765782+;Distance=6065;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=L1M:LINE:L1;LeftGenes=;RightGenes=;XRef=rs74164256 (chr2:4759185-4765250);Frequency=1.00
chr2	CG	SV	4759185	4759485	61	+	.	ID=3996;Type=deletion;Left=chr2:4759185-4759485;Right=chr2:4765250-4765782
chr2	CG	SV	4765250	4765782	61	+	.	ID=3996;Type=deletion;Left=chr2:4759185-4759485;Right=chr2:4765250-4765782
chr2	CG	SV	7014439	7017907	89	.	.	ID=3994;Type=deletion;Left=chr2:7014439-7014947+;Right=chr2:7017433-7017907+;Distance=2994;DiscordantMatePairAlignments=89;LeftRepeat=;RightRepeat=MSTC:LTR:MaLR;LeftGenes=NM_014746:+;RightGenes=NM_014746:+;XRef=;Frequency=0.00
chr2	CG	SV	7014439	7014947	89	+	.	ID=3994;Type=deletion;Left=chr2:7014439-7014947;Right=chr2:7017433-7017907
chr2	CG	SV	7017433	7017907	89	+	.	ID=3994;Type=deletion;Left=chr2:7014439-7014947;Right=chr2:7017433-7017907
chr2	CG	SV	8534264	8535101	14	.	.	ID=3993;Type=deletion;Left=chr2:8534264-8534675+;Right=chr2:8534571-8535101+;Distance=307;DiscordantMatePairAlignments=14;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs74164259 (chr2:8534264-8534571);Frequency=1.00
chr2	CG	SV	8534264	8534675	14	+	.	ID=3993;Type=deletion;Left=chr2:8534264-8534675;Right=chr2:8534571-8535101
chr2	CG	SV	8534571	8535101	14	+	.	ID=3993;Type=deletion;Left=chr2:8534264-8534675;Right=chr2:8534571-8535101
chr2	CG	SV	9876688	9877552	29	.	.	ID=3992;Type=deletion;Left=chr2:9876688-9877138+;Right=chr2:9877038-9877552+;Distance=350;DiscordantMatePairAlignments=29;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=FRAM:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr2	CG	SV	9876688	9877138	29	+	.	ID=3992;Type=deletion;Left=chr2:9876688-9877138;Right=chr2:9877038-9877552
chr2	CG	SV	9877038	9877552	29	+	.	ID=3992;Type=deletion;Left=chr2:9876688-9877138;Right=chr2:9877038-9877552
chr2	CG	SV	10743489	10744646	75	.	.	ID=4890;Type=distal-duplication;Left=chr2:10743489-10743895+;Right=chr2:10744474-10744646-;Distance=1157;DiscordantMatePairAlignments=75;LeftRepeat=AluJb:SINE:Alu;RightRepeat=L3:LINE:CR1;LeftGenes=NM_024894:-;RightGenes=NM_024894:-;XRef=;Frequency=0.35
chr2	CG	SV	10743489	10743895	75	+	.	ID=4890;Type=distal-duplication;Left=chr2:10743489-10743895;Right=chr2:10744474-10744646
chr2	CG	SV	10744474	10744646	75	+	.	ID=4890;Type=distal-duplication;Left=chr2:10743489-10743895;Right=chr2:10744474-10744646
chr2	CG	SV	10742983	10744647	75	.	.	ID=836;Type=distal-duplication;Left=chr2:10742983-10743497-;Right=chr2:10744476-10744647+;Distance=979;DiscordantMatePairAlignments=75;LeftRepeat=AluJb:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=NM_024894:-;RightGenes=NM_024894:-;XRef=;Frequency=0.35
chr2	CG	SV	10742983	10743497	75	-	.	ID=836;Type=distal-duplication;Left=chr2:10742983-10743497;Right=chr2:10744476-10744647
chr2	CG	SV	10744476	10744647	75	-	.	ID=836;Type=distal-duplication;Left=chr2:10742983-10743497;Right=chr2:10744476-10744647
chr2	CG	SV	11166249	11166714	10	.	.	ID=3991;Type=deletion;Left=chr2:11166249-11166845+;Right=chr2:11166610-11166714+;Distance=361;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66907370 (chr2:11165958-11166323);Frequency=0.35
chr2	CG	SV	11166249	11166845	10	+	.	ID=3991;Type=deletion;Left=chr2:11166249-11166845;Right=chr2:11166610-11166714
chr2	CG	SV	11166610	11166714	10	+	.	ID=3991;Type=deletion;Left=chr2:11166249-11166845;Right=chr2:11166610-11166714
chr2	CG	SV	14595272	14687963	49	.	.	ID=3990;Type=deletion;Left=chr2:14595272-14595742+;Right=chr2:14687503-14687963+;Distance=92231;DiscordantMatePairAlignments=49;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	14595272	14595742	49	+	.	ID=3990;Type=deletion;Left=chr2:14595272-14595742;Right=chr2:14687503-14687963
chr2	CG	SV	14687503	14687963	49	+	.	ID=3990;Type=deletion;Left=chr2:14595272-14595742;Right=chr2:14687503-14687963
chr2	CG	SV	16168571	16169530	10	.	.	ID=3989;Type=deletion;Left=chr2:16168571-16169025+;Right=chr2:16168896-16169530+;Distance=325;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs74164266 (chr2:16168571-16168896);Frequency=0.94
chr2	CG	SV	16168571	16169025	10	+	.	ID=3989;Type=deletion;Left=chr2:16168571-16169025;Right=chr2:16168896-16169530
chr2	CG	SV	16168896	16169530	10	+	.	ID=3989;Type=deletion;Left=chr2:16168571-16169025;Right=chr2:16168896-16169530
chr2	CG	SV	17109916	17110039	61	-	.	ID=782;Type=interchromosomal;Left=chr2:17109916-17110039-;Right=chr9:121845640-121846281+;Distance=;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	121845640	121846281	61	-	.	ID=782;Type=interchromosomal;Left=chr2:17109916-17110039-;Right=chr9:121845640-121846281+;Distance=;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	17112030	17113246	14	.	.	ID=4887;Type=probable-inversion;Left=chr2:17112030-17112171+;Right=chr2:17112800-17113246-;Distance=1216;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	17112030	17112171	14	+	.	ID=4887;Type=probable-inversion;Left=chr2:17112030-17112171;Right=chr2:17112800-17113246
chr2	CG	SV	17112800	17113246	14	+	.	ID=4887;Type=probable-inversion;Left=chr2:17112030-17112171;Right=chr2:17112800-17113246
chr2	CG	SV	20530159	20531115	20	.	.	ID=3987;Type=deletion;Left=chr2:20530159-20530594+;Right=chr2:20530466-20531115+;Distance=307;DiscordantMatePairAlignments=20;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67436233 (chr2:20530159-20530466);Frequency=0.47
chr2	CG	SV	20530159	20530594	20	+	.	ID=3987;Type=deletion;Left=chr2:20530159-20530594;Right=chr2:20530466-20531115
chr2	CG	SV	20530466	20531115	20	+	.	ID=3987;Type=deletion;Left=chr2:20530159-20530594;Right=chr2:20530466-20531115
chr2	CG	SV	33077966	33081249	135	.	.	ID=3983;Type=deletion;Left=chr2:33077966-33078422+;Right=chr2:33080796-33081249+;Distance=2830;DiscordantMatePairAlignments=135;LeftRepeat=MER5B:DNA:MER1_type;RightRepeat=;LeftGenes=NM_206943:+;RightGenes=NM_206943:+;XRef=rs72458672 (chr2:33077966-33080796);Frequency=0.59
chr2	CG	SV	33077966	33078422	135	+	.	ID=3983;Type=deletion;Left=chr2:33077966-33078422;Right=chr2:33080796-33081249
chr2	CG	SV	33080796	33081249	135	+	.	ID=3983;Type=deletion;Left=chr2:33077966-33078422;Right=chr2:33080796-33081249
chr2	CG	SV	34377160	34379551	60	.	.	ID=3982;Type=deletion;Left=chr2:34377160-34377570+;Right=chr2:34379225-34379551+;Distance=2065;DiscordantMatePairAlignments=60;LeftRepeat=;RightRepeat=L1PA6:LINE:L1;LeftGenes=;RightGenes=;XRef=rs68009994 (chr2:34377160-34379225);Frequency=0.76
chr2	CG	SV	34377160	34377570	60	+	.	ID=3982;Type=deletion;Left=chr2:34377160-34377570;Right=chr2:34379225-34379551
chr2	CG	SV	34379225	34379551	60	+	.	ID=3982;Type=deletion;Left=chr2:34377160-34377570;Right=chr2:34379225-34379551
chr2	CG	SV	41629470	41635284	35	.	.	ID=3978;Type=deletion;Left=chr2:41629470-41629872+;Right=chr2:41634787-41635284+;Distance=5317;DiscordantMatePairAlignments=35;LeftRepeat=;RightRepeat=L1P5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66488562 (chr2:41629470-41634786);Frequency=0.47
chr2	CG	SV	41629470	41629872	35	+	.	ID=3978;Type=deletion;Left=chr2:41629470-41629872;Right=chr2:41634787-41635284
chr2	CG	SV	41634787	41635284	35	+	.	ID=3978;Type=deletion;Left=chr2:41629470-41629872;Right=chr2:41634787-41635284
chr2	CG	SV	41826660	41829876	17	.	.	ID=3977;Type=deletion;Left=chr2:41826660-41826989+;Right=chr2:41829384-41829876+;Distance=2724;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66596405 (chr2:41826660-41829384);Frequency=1.00
chr2	CG	SV	41826660	41826989	17	+	.	ID=3977;Type=deletion;Left=chr2:41826660-41826989;Right=chr2:41829384-41829876
chr2	CG	SV	41829384	41829876	17	+	.	ID=3977;Type=deletion;Left=chr2:41826660-41826989;Right=chr2:41829384-41829876
chr2	CG	SV	42199763	42201281	58	.	.	ID=3976;Type=deletion;Left=chr2:42199763-42200094+;Right=chr2:42200822-42201281+;Distance=1059;DiscordantMatePairAlignments=58;LeftRepeat=L1ME1:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr2	CG	SV	42199763	42200094	58	+	.	ID=3976;Type=deletion;Left=chr2:42199763-42200094;Right=chr2:42200822-42201281
chr2	CG	SV	42200822	42201281	58	+	.	ID=3976;Type=deletion;Left=chr2:42199763-42200094;Right=chr2:42200822-42201281
chr2	CG	SV	44337789	44345195	18	.	.	ID=3974;Type=deletion;Left=chr2:44337789-44338091+;Right=chr2:44345032-44345195+;Distance=7243;DiscordantMatePairAlignments=18;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	44337789	44338091	18	+	.	ID=3974;Type=deletion;Left=chr2:44337789-44338091;Right=chr2:44345032-44345195
chr2	CG	SV	44345032	44345195	18	+	.	ID=3974;Type=deletion;Left=chr2:44337789-44338091;Right=chr2:44345032-44345195
chr2	CG	SV	46763654	46764512	10	.	.	ID=3973;Type=deletion;Left=chr2:46763654-46764150+;Right=chr2:46763970-46764512+;Distance=316;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71757447 (chr2:46763636-46763952);Frequency=1.00
chr2	CG	SV	46763654	46764150	10	+	.	ID=3973;Type=deletion;Left=chr2:46763654-46764150;Right=chr2:46763970-46764512
chr2	CG	SV	46763970	46764512	10	+	.	ID=3973;Type=deletion;Left=chr2:46763654-46764150;Right=chr2:46763970-46764512
chr2	CG	SV	51078052	51079491	23	.	.	ID=3971;Type=deletion;Left=chr2:51078052-51078452+;Right=chr2:51079047-51079491+;Distance=995;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_001135659:-;NM_004801:-;RightGenes=NM_001135659:-;NM_004801:-;XRef=rs67948039 (chr2:51078051-51079046);Frequency=0.06
chr2	CG	SV	51078052	51078452	23	+	.	ID=3971;Type=deletion;Left=chr2:51078052-51078452;Right=chr2:51079047-51079491
chr2	CG	SV	51079047	51079491	23	+	.	ID=3971;Type=deletion;Left=chr2:51078052-51078452;Right=chr2:51079047-51079491
chr2	CG	SV	53626037	53631764	88	.	.	ID=3967;Type=deletion;Left=chr2:53626037-53626496+;Right=chr2:53631348-53631764+;Distance=5311;DiscordantMatePairAlignments=88;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	53626037	53626496	88	+	.	ID=3967;Type=deletion;Left=chr2:53626037-53626496;Right=chr2:53631348-53631764
chr2	CG	SV	53631348	53631764	88	+	.	ID=3967;Type=deletion;Left=chr2:53626037-53626496;Right=chr2:53631348-53631764
chr2	CG	SV	54418997	54421339	14	.	.	ID=3966;Type=deletion;Left=chr2:54418997-54419476+;Right=chr2:54420977-54421339+;Distance=1980;DiscordantMatePairAlignments=14;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_001100396:+;RightGenes=NM_001100396:+;XRef=rs66784896 (chr2:54419000-54420977);Frequency=0.94
chr2	CG	SV	54418997	54419476	14	+	.	ID=3966;Type=deletion;Left=chr2:54418997-54419476;Right=chr2:54420977-54421339
chr2	CG	SV	54420977	54421339	14	+	.	ID=3966;Type=deletion;Left=chr2:54418997-54419476;Right=chr2:54420977-54421339
chr2	CG	SV	61553925	61556963	49	.	.	ID=835;Type=probable-inversion;Left=chr2:61553925-61554269-;Right=chr2:61556436-61556963+;Distance=2167;DiscordantMatePairAlignments=49;LeftRepeat=AluJo:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr2	CG	SV	61553925	61554269	49	-	.	ID=835;Type=probable-inversion;Left=chr2:61553925-61554269;Right=chr2:61556436-61556963
chr2	CG	SV	61556436	61556963	49	-	.	ID=835;Type=probable-inversion;Left=chr2:61553925-61554269;Right=chr2:61556436-61556963
chr2	CG	SV	66359098	66361562	166	.	.	ID=3960;Type=deletion;Left=chr2:66359098-66359511+;Right=chr2:66361062-66361562+;Distance=1964;DiscordantMatePairAlignments=166;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs67498305 (chr2:66359098-66361062);Frequency=0.41
chr2	CG	SV	66359098	66359511	166	+	.	ID=3960;Type=deletion;Left=chr2:66359098-66359511;Right=chr2:66361062-66361562
chr2	CG	SV	66361062	66361562	166	+	.	ID=3960;Type=deletion;Left=chr2:66359098-66359511;Right=chr2:66361062-66361562
chr2	CG	SV	69978557	69979487	57	.	.	ID=3959;Type=deletion;Left=chr2:69978557-69978945+;Right=chr2:69979078-69979487+;Distance=521;DiscordantMatePairAlignments=57;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;LeftGenes=NM_006857:+;RightGenes=NM_006857:+;XRef=rs67525018 (chr2:69978548-69979069);Frequency=0.76
chr2	CG	SV	69978557	69978945	57	+	.	ID=3959;Type=deletion;Left=chr2:69978557-69978945;Right=chr2:69979078-69979487
chr2	CG	SV	69979078	69979487	57	+	.	ID=3959;Type=deletion;Left=chr2:69978557-69978945;Right=chr2:69979078-69979487
chr2	CG	SV	76380020	76382948	47	.	.	ID=3956;Type=deletion;Left=chr2:76380020-76380433+;Right=chr2:76382415-76382948+;Distance=2395;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68153335 (chr2:76380020-76382415);Frequency=1.00
chr2	CG	SV	76380020	76380433	47	+	.	ID=3956;Type=deletion;Left=chr2:76380020-76380433;Right=chr2:76382415-76382948
chr2	CG	SV	76382415	76382948	47	+	.	ID=3956;Type=deletion;Left=chr2:76380020-76380433;Right=chr2:76382415-76382948
chr2	CG	SV	77971399	77972377	43	.	.	ID=3955;Type=deletion;Left=chr2:77971399-77971832+;Right=chr2:77971866-77972377+;Distance=467;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=L1MA7:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72224379 (chr2:77971399-77971865);Frequency=0.47
chr2	CG	SV	77971399	77971832	43	+	.	ID=3955;Type=deletion;Left=chr2:77971399-77971832;Right=chr2:77971866-77972377
chr2	CG	SV	77971866	77972377	43	+	.	ID=3955;Type=deletion;Left=chr2:77971399-77971832;Right=chr2:77971866-77972377
chr2	CG	SV	79970592	80021758	73	.	.	ID=1850;Type=tandem-duplication;Left=chr2:79970592-79970949-;Right=chr2:80021252-80021758-;Distance=50809;DiscordantMatePairAlignments=73;LeftRepeat=;RightRepeat=;LeftGenes=NM_001164883:+;NM_004389:+;RightGenes=NM_001164883:+;NM_004389:+;XRef=;Frequency=0.00
chr2	CG	SV	79970592	79970949	73	-	.	ID=1850;Type=tandem-duplication;Left=chr2:79970592-79970949;Right=chr2:80021252-80021758
chr2	CG	SV	80021252	80021758	73	-	.	ID=1850;Type=tandem-duplication;Left=chr2:79970592-79970949;Right=chr2:80021252-80021758
chr2	CG	SV	88810361	88813925	259	.	.	ID=3951;Type=deletion;Left=chr2:88810361-88810931+;Right=chr2:88813415-88813925+;Distance=3054;DiscordantMatePairAlignments=259;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_144563:+;RightGenes=NM_144563:+;XRef=rs71858468 (chr2:88810361-88813415);Frequency=1.00
chr2	CG	SV	88810361	88810931	259	+	.	ID=3951;Type=deletion;Left=chr2:88810361-88810931;Right=chr2:88813415-88813925
chr2	CG	SV	88813415	88813925	259	+	.	ID=3951;Type=deletion;Left=chr2:88810361-88810931;Right=chr2:88813415-88813925
chr2	CG	SV	91148225	91149210	11	.	.	ID=3948;Type=deletion;Left=chr2:91148225-91148604+;Right=chr2:91149003-91149210+;Distance=778;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=AluSq:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs6146841 (chr2:91148022-91148798);Frequency=0.94
chr2	CG	SV	91148225	91148604	11	+	.	ID=3948;Type=deletion;Left=chr2:91148225-91148604;Right=chr2:91149003-91149210
chr2	CG	SV	91149003	91149210	11	+	.	ID=3948;Type=deletion;Left=chr2:91148225-91148604;Right=chr2:91149003-91149210
chr2	CG	SV	94892322	94912097	44	.	.	ID=3946;Type=deletion;Left=chr2:94892322-94892727+;Right=chr2:94911773-94912097+;Distance=19451;DiscordantMatePairAlignments=44;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr2	CG	SV	94892322	94892727	44	+	.	ID=3946;Type=deletion;Left=chr2:94892322-94892727;Right=chr2:94911773-94912097
chr2	CG	SV	94911773	94912097	44	+	.	ID=3946;Type=deletion;Left=chr2:94892322-94892727;Right=chr2:94911773-94912097
chr2	CG	SV	101341646	101342404	10	.	.	ID=3841;Type=deletion;Left=chr2:101341646-101342036+;Right=chr2:101341979-101342404+;Distance=333;DiscordantMatePairAlignments=10;LeftRepeat=MER50:LTR:ERV1;Self chain;RightRepeat=MER50:LTR:ERV1;Self chain;LeftGenes=NM_153836:-;RightGenes=NM_153836:-;XRef=rs66612024 (chr2:101341646-101341979);Frequency=0.94
chr2	CG	SV	101341646	101342036	10	+	.	ID=3841;Type=deletion;Left=chr2:101341646-101342036;Right=chr2:101341979-101342404
chr2	CG	SV	101341979	101342404	10	+	.	ID=3841;Type=deletion;Left=chr2:101341646-101342036;Right=chr2:101341979-101342404
chr2	CG	SV	101343610	101347200	28	.	.	ID=3840;Type=deletion;Left=chr2:101343610-101344085+;Right=chr2:101346945-101347200+;Distance=3335;DiscordantMatePairAlignments=28;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=MER20B:DNA:MER1_type;Self chain;LeftGenes=NM_153836:-;RightGenes=NM_153836:-;XRef=;Frequency=0.00
chr2	CG	SV	101343610	101344085	28	+	.	ID=3840;Type=deletion;Left=chr2:101343610-101344085;Right=chr2:101346945-101347200
chr2	CG	SV	101346945	101347200	28	+	.	ID=3840;Type=deletion;Left=chr2:101343610-101344085;Right=chr2:101346945-101347200
chr2	CG	SV	110210043	111170094	90	.	.	ID=3836;Type=deletion;Left=chr2:110210043-110210528+;Right=chr2:111169574-111170094+;Distance=959531;DiscordantMatePairAlignments=90;LeftRepeat=SegDup;Self chain;RightRepeat=LTR19B:LTR:ERV1;Self chain;LeftGenes=NM_005434:-;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	110210043	110210528	90	+	.	ID=3836;Type=deletion;Left=chr2:110210043-110210528;Right=chr2:111169574-111170094
chr2	CG	SV	111169574	111170094	90	+	.	ID=3836;Type=deletion;Left=chr2:110210043-110210528;Right=chr2:111169574-111170094
chr2	CG	SV	116690528	116698760	48	.	.	ID=781;Type=complex;Left=chr2:116690528-116690809-;Right=chr2:116698356-116698760+;Distance=7547;DiscordantMatePairAlignments=48;LeftRepeat=;RightRepeat=L1M4c:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr2	CG	SV	116690528	116690809	48	-	.	ID=781;Type=complex;Left=chr2:116690528-116690809;Right=chr2:116698356-116698760
chr2	CG	SV	116698356	116698760	48	-	.	ID=781;Type=complex;Left=chr2:116690528-116690809;Right=chr2:116698356-116698760
chr2	CG	SV	116694769	116698777	43	.	.	ID=4812;Type=complex;Left=chr2:116694769-116695215+;Right=chr2:116698357-116698777-;Distance=4008;DiscordantMatePairAlignments=43;LeftRepeat=L1M4c:LINE:L1;RightRepeat=L1M4c:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr2	CG	SV	116694769	116695215	43	+	.	ID=4812;Type=complex;Left=chr2:116694769-116695215;Right=chr2:116698357-116698777
chr2	CG	SV	116698357	116698777	43	+	.	ID=4812;Type=complex;Left=chr2:116694769-116695215;Right=chr2:116698357-116698777
chr2	CG	SV	119762084	119767557	75	.	.	ID=3831;Type=deletion;Left=chr2:119762084-119762500+;Right=chr2:119767011-119767557+;Distance=4927;DiscordantMatePairAlignments=75;LeftRepeat=L1ME2:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	119762084	119762500	75	+	.	ID=3831;Type=deletion;Left=chr2:119762084-119762500;Right=chr2:119767011-119767557
chr2	CG	SV	119767011	119767557	75	+	.	ID=3831;Type=deletion;Left=chr2:119762084-119762500;Right=chr2:119767011-119767557
chr2	CG	SV	119998875	119999614	153	.	.	ID=1779;Type=tandem-duplication;Left=chr2:119998875-119999252-;Right=chr2:119999300-119999614-;Distance=362;DiscordantMatePairAlignments=153;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr2	CG	SV	119998875	119999252	153	-	.	ID=1779;Type=tandem-duplication;Left=chr2:119998875-119999252;Right=chr2:119999300-119999614
chr2	CG	SV	119999300	119999614	153	-	.	ID=1779;Type=tandem-duplication;Left=chr2:119998875-119999252;Right=chr2:119999300-119999614
chr2	CG	SV	120133426	120134958	51	.	.	ID=1778;Type=distal-duplication;Left=chr2:120133426-120133549-;Right=chr2:120134371-120134958-;Distance=1409;DiscordantMatePairAlignments=51;LeftRepeat=L1MC4a:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	120133426	120133549	51	-	.	ID=1778;Type=distal-duplication;Left=chr2:120133426-120133549;Right=chr2:120134371-120134958
chr2	CG	SV	120134371	120134958	51	-	.	ID=1778;Type=distal-duplication;Left=chr2:120133426-120133549;Right=chr2:120134371-120134958
chr2	CG	SV	120133670	120135492	43	.	.	ID=3830;Type=distal-duplication;Left=chr2:120133670-120133793+;Right=chr2:120134968-120135492+;Distance=1298;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72020679 (chr2:120133667-120134965);Frequency=0.94
chr2	CG	SV	120133670	120133793	43	+	.	ID=3830;Type=distal-duplication;Left=chr2:120133670-120133793;Right=chr2:120134968-120135492
chr2	CG	SV	120134968	120135492	43	+	.	ID=3830;Type=distal-duplication;Left=chr2:120133670-120133793;Right=chr2:120134968-120135492
chr2	CG	SV	123081348	123082299	66	.	.	ID=3829;Type=deletion;Left=chr2:123081348-123081801+;Right=chr2:123081846-123082299+;Distance=498;DiscordantMatePairAlignments=66;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr2	CG	SV	123081348	123081801	66	+	.	ID=3829;Type=deletion;Left=chr2:123081348-123081801;Right=chr2:123081846-123082299
chr2	CG	SV	123081846	123082299	66	+	.	ID=3829;Type=deletion;Left=chr2:123081348-123081801;Right=chr2:123081846-123082299
chr2	CG	SV	124768226	124769710	69	.	.	ID=4811;Type=probable-inversion;Left=chr2:124768226-124768702+;Right=chr2:124769383-124769710-;Distance=1484;DiscordantMatePairAlignments=69;LeftRepeat=;RightRepeat=MER41B:LTR:ERV1;LeftGenes=NM_130773:+;RightGenes=NM_130773:+;XRef=;Frequency=0.82
chr2	CG	SV	124768226	124768702	69	+	.	ID=4811;Type=probable-inversion;Left=chr2:124768226-124768702;Right=chr2:124769383-124769710
chr2	CG	SV	124769383	124769710	69	+	.	ID=4811;Type=probable-inversion;Left=chr2:124768226-124768702;Right=chr2:124769383-124769710
chr2	CG	SV	125483031	125484873	47	.	.	ID=3828;Type=distal-duplication;Left=chr2:125483031-125483434+;Right=chr2:125484718-125484873+;Distance=1687;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr2	CG	SV	125483031	125483434	47	+	.	ID=3828;Type=distal-duplication;Left=chr2:125483031-125483434;Right=chr2:125484718-125484873
chr2	CG	SV	125484718	125484873	47	+	.	ID=3828;Type=distal-duplication;Left=chr2:125483031-125483434;Right=chr2:125484718-125484873
chr2	CG	SV	125482613	125484871	37	.	.	ID=1777;Type=distal-duplication;Left=chr2:125482613-125483031-;Right=chr2:125484715-125484871-;Distance=1840;DiscordantMatePairAlignments=37;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr2	CG	SV	125482613	125483031	37	-	.	ID=1777;Type=distal-duplication;Left=chr2:125482613-125483031;Right=chr2:125484715-125484871
chr2	CG	SV	125484715	125484871	37	-	.	ID=1777;Type=distal-duplication;Left=chr2:125482613-125483031;Right=chr2:125484715-125484871
chr2	CG	SV	126159721	126168837	149	.	.	ID=3827;Type=deletion;Left=chr2:126159721-126160148+;Right=chr2:126168305-126168837+;Distance=8584;DiscordantMatePairAlignments=149;LeftRepeat=L1MD1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66740069 (chr2:126159717-126168301);Frequency=0.88
chr2	CG	SV	126159721	126160148	149	+	.	ID=3827;Type=deletion;Left=chr2:126159721-126160148;Right=chr2:126168305-126168837
chr2	CG	SV	126168305	126168837	149	+	.	ID=3827;Type=deletion;Left=chr2:126159721-126160148;Right=chr2:126168305-126168837
chr2	CG	SV	127391226	127394227	186	.	.	ID=3826;Type=deletion;Left=chr2:127391226-127391796+;Right=chr2:127393742-127394227+;Distance=2516;DiscordantMatePairAlignments=186;LeftRepeat=;RightRepeat=L1MEd:LINE:L1;LeftGenes=;RightGenes=;XRef=rs74164329 (chr2:127391228-127393744);Frequency=1.00
chr2	CG	SV	127391226	127391796	186	+	.	ID=3826;Type=deletion;Left=chr2:127391226-127391796;Right=chr2:127393742-127394227
chr2	CG	SV	127393742	127394227	186	+	.	ID=3826;Type=deletion;Left=chr2:127391226-127391796;Right=chr2:127393742-127394227
chr2	CG	SV	131603371	131603560	26	.	.	ID=4810;Type=probable-inversion;Left=chr2:131603371-131603697+;Right=chr2:131603388-131603560-;Distance=189;DiscordantMatePairAlignments=26;LeftRepeat=AluSx:SINE:Alu;Self chain;Tandem A;RightRepeat=AluSq:SINE:Alu;Self chain;LeftGenes=NM_001100623:+;NM_017958:+;RightGenes=NM_001100623:+;NM_017958:+;XRef=;Frequency=0.94
chr2	CG	SV	131603371	131603697	26	+	.	ID=4810;Type=probable-inversion;Left=chr2:131603371-131603697;Right=chr2:131603388-131603560
chr2	CG	SV	131603388	131603560	26	+	.	ID=4810;Type=probable-inversion;Left=chr2:131603371-131603697;Right=chr2:131603388-131603560
chr2	CG	SV	132733902	132735636	697	.	.	ID=3825;Type=deletion;Left=chr2:132733902-132734468+;Right=chr2:132735185-132735636+;Distance=1283;DiscordantMatePairAlignments=697;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs72407802 (chr2:132733904-132735114);Frequency=1.00
chr2	CG	SV	132733902	132734468	697	+	.	ID=3825;Type=deletion;Left=chr2:132733902-132734468;Right=chr2:132735185-132735636
chr2	CG	SV	132735185	132735636	697	+	.	ID=3825;Type=deletion;Left=chr2:132733902-132734468;Right=chr2:132735185-132735636
chr2	CG	SV	132736921	132737339	94	+	.	ID=4566;Type=complex;Left=chr2:132736921-132737339+;Right=chr17:42569525-42569727-;Distance=;DiscordantMatePairAlignments=94;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=0.00
chr17	CG	SV	42569525	42569727	94	+	.	ID=4566;Type=complex;Left=chr2:132736921-132737339+;Right=chr17:42569525-42569727-;Distance=;DiscordantMatePairAlignments=94;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=0.00
chr2	CG	SV	132742798	132747171	320	.	.	ID=1776;Type=complex;Left=chr2:132742798-132743161-;Right=chr2:132746841-132747171-;Distance=4010;DiscordantMatePairAlignments=320;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	132742798	132743161	320	-	.	ID=1776;Type=complex;Left=chr2:132742798-132743161;Right=chr2:132746841-132747171
chr2	CG	SV	132746841	132747171	320	-	.	ID=1776;Type=complex;Left=chr2:132742798-132743161;Right=chr2:132746841-132747171
chr2	CG	SV	132747167	132747457	331	+	.	ID=4664;Type=complex;Left=chr2:132747167-132747457+;Right=chr16:33862766-33863532-;Distance=;DiscordantMatePairAlignments=331;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	33862766	33863532	331	+	.	ID=4664;Type=complex;Left=chr2:132747167-132747457+;Right=chr16:33862766-33863532-;Distance=;DiscordantMatePairAlignments=331;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	132747191	132747541	52	+	.	ID=3451;Type=complex;Left=chr2:132747191-132747541+;Right=chr12:36735016-36735173+;Distance=;DiscordantMatePairAlignments=52;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	36735016	36735173	52	+	.	ID=3451;Type=complex;Left=chr2:132747191-132747541+;Right=chr12:36735016-36735173+;Distance=;DiscordantMatePairAlignments=52;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	134683177	134687090	167	.	.	ID=3820;Type=deletion;Left=chr2:134683177-134683642+;Right=chr2:134686607-134687090+;Distance=3430;DiscordantMatePairAlignments=167;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67845770 (chr2:134683170-134686600);Frequency=0.94
chr2	CG	SV	134683177	134683642	167	+	.	ID=3820;Type=deletion;Left=chr2:134683177-134683642;Right=chr2:134686607-134687090
chr2	CG	SV	134686607	134687090	167	+	.	ID=3820;Type=deletion;Left=chr2:134683177-134683642;Right=chr2:134686607-134687090
chr2	CG	SV	146579091	146593901	68	.	.	ID=3816;Type=deletion;Left=chr2:146579091-146579571+;Right=chr2:146593334-146593901+;Distance=14243;DiscordantMatePairAlignments=68;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=MLT1H-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr2	CG	SV	146579091	146579571	68	+	.	ID=3816;Type=deletion;Left=chr2:146579091-146579571;Right=chr2:146593334-146593901
chr2	CG	SV	146593334	146593901	68	+	.	ID=3816;Type=deletion;Left=chr2:146579091-146579571;Right=chr2:146593334-146593901
chr2	CG	SV	153168165	153169677	22	.	.	ID=4809;Type=complex;Left=chr2:153168165-153168652+;Right=chr2:153169338-153169677-;Distance=1512;DiscordantMatePairAlignments=22;LeftRepeat=;RightRepeat=;LeftGenes=NM_052905:+;RightGenes=NM_052905:+;XRef=;Frequency=0.29
chr2	CG	SV	153168165	153168652	22	+	.	ID=4809;Type=complex;Left=chr2:153168165-153168652;Right=chr2:153169338-153169677
chr2	CG	SV	153169338	153169677	22	+	.	ID=4809;Type=complex;Left=chr2:153168165-153168652;Right=chr2:153169338-153169677
chr2	CG	SV	153168165	153169851	16	.	.	ID=3813;Type=complex;Left=chr2:153168165-153168312+;Right=chr2:153169692-153169851+;Distance=1527;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=;LeftGenes=NM_052905:+;RightGenes=NM_052905:+;XRef=;Frequency=0.29
chr2	CG	SV	153168165	153168312	16	+	.	ID=3813;Type=complex;Left=chr2:153168165-153168312;Right=chr2:153169692-153169851
chr2	CG	SV	153169692	153169851	16	+	.	ID=3813;Type=complex;Left=chr2:153168165-153168312;Right=chr2:153169692-153169851
chr2	CG	SV	153169003	153170039	13	.	.	ID=775;Type=complex;Left=chr2:153169003-153169341-;Right=chr2:153169694-153170039+;Distance=353;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=;LeftGenes=NM_052905:+;RightGenes=NM_052905:+;XRef=;Frequency=0.29
chr2	CG	SV	153169003	153169341	13	-	.	ID=775;Type=complex;Left=chr2:153169003-153169341;Right=chr2:153169694-153170039
chr2	CG	SV	153169694	153170039	13	-	.	ID=775;Type=complex;Left=chr2:153169003-153169341;Right=chr2:153169694-153170039
chr2	CG	SV	153504241	153508335	30	.	.	ID=3812;Type=deletion;Left=chr2:153504241-153504636+;Right=chr2:153507989-153508335+;Distance=3748;DiscordantMatePairAlignments=30;LeftRepeat=L1PA14:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr2	CG	SV	153504241	153504636	30	+	.	ID=3812;Type=deletion;Left=chr2:153504241-153504636;Right=chr2:153507989-153508335
chr2	CG	SV	153507989	153508335	30	+	.	ID=3812;Type=deletion;Left=chr2:153504241-153504636;Right=chr2:153507989-153508335
chr2	CG	SV	159857369	159860459	108	.	.	ID=3811;Type=deletion;Left=chr2:159857369-159857875+;Right=chr2:159859900-159860459+;Distance=2531;DiscordantMatePairAlignments=108;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66496159 (chr2:159857363-159859894);Frequency=1.00
chr2	CG	SV	159857369	159857875	108	+	.	ID=3811;Type=deletion;Left=chr2:159857369-159857875;Right=chr2:159859900-159860459
chr2	CG	SV	159859900	159860459	108	+	.	ID=3811;Type=deletion;Left=chr2:159857369-159857875;Right=chr2:159859900-159860459
chr2	CG	SV	161503856	161504656	11	.	.	ID=3809;Type=deletion;Left=chr2:161503856-161504430+;Right=chr2:161504180-161504656+;Distance=324;DiscordantMatePairAlignments=11;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67778032 (chr2:161503846-161504170);Frequency=1.00
chr2	CG	SV	161503856	161504430	11	+	.	ID=3809;Type=deletion;Left=chr2:161503856-161504430;Right=chr2:161504180-161504656
chr2	CG	SV	161504180	161504656	11	+	.	ID=3809;Type=deletion;Left=chr2:161503856-161504430;Right=chr2:161504180-161504656
chr2	CG	SV	176973891	176980777	64	.	.	ID=3805;Type=deletion;Left=chr2:176973891-176974222+;Right=chr2:176980290-176980777+;Distance=6399;DiscordantMatePairAlignments=64;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66861570 (chr2:176973891-176980290);Frequency=0.82
chr2	CG	SV	176973891	176974222	64	+	.	ID=3805;Type=deletion;Left=chr2:176973891-176974222;Right=chr2:176980290-176980777
chr2	CG	SV	176980290	176980777	64	+	.	ID=3805;Type=deletion;Left=chr2:176973891-176974222;Right=chr2:176980290-176980777
chr2	CG	SV	177081925	177094907	27	.	.	ID=4808;Type=complex;Left=chr2:177081925-177082337+;Right=chr2:177094535-177094907-;Distance=12982;DiscordantMatePairAlignments=27;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	177081925	177082337	27	+	.	ID=4808;Type=complex;Left=chr2:177081925-177082337;Right=chr2:177094535-177094907
chr2	CG	SV	177094535	177094907	27	+	.	ID=4808;Type=complex;Left=chr2:177081925-177082337;Right=chr2:177094535-177094907
chr2	CG	SV	177085201	177094599	41	.	.	ID=774;Type=complex;Left=chr2:177085201-177085681-;Right=chr2:177094247-177094599+;Distance=8566;DiscordantMatePairAlignments=41;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	177085201	177085681	41	-	.	ID=774;Type=complex;Left=chr2:177085201-177085681;Right=chr2:177094247-177094599
chr2	CG	SV	177094247	177094599	41	-	.	ID=774;Type=complex;Left=chr2:177085201-177085681;Right=chr2:177094247-177094599
chr2	CG	SV	182064228	182065049	14	.	.	ID=3803;Type=deletion;Left=chr2:182064228-182064693+;Right=chr2:182064543-182065049+;Distance=315;DiscordantMatePairAlignments=14;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=;LeftGenes=NM_000885:+;RightGenes=NM_000885:+;XRef=rs66936328 (chr2:182064228-182064543);Frequency=1.00
chr2	CG	SV	182064228	182064693	14	+	.	ID=3803;Type=deletion;Left=chr2:182064228-182064693;Right=chr2:182064543-182065049
chr2	CG	SV	182064543	182065049	14	+	.	ID=3803;Type=deletion;Left=chr2:182064228-182064693;Right=chr2:182064543-182065049
chr2	CG	SV	183958226	183958891	14	.	.	ID=3800;Type=deletion;Left=chr2:183958226-183958716+;Right=chr2:183958569-183958891+;Distance=343;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68117218 (chr2:183958211-183958554);Frequency=1.00
chr2	CG	SV	183958226	183958716	14	+	.	ID=3800;Type=deletion;Left=chr2:183958226-183958716;Right=chr2:183958569-183958891
chr2	CG	SV	183958569	183958891	14	+	.	ID=3800;Type=deletion;Left=chr2:183958226-183958716;Right=chr2:183958569-183958891
chr2	CG	SV	184039475	184045815	51	.	.	ID=1761;Type=tandem-duplication;Left=chr2:184039475-184040004-;Right=chr2:184045449-184045815-;Distance=5811;DiscordantMatePairAlignments=51;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	184039475	184040004	51	-	.	ID=1761;Type=tandem-duplication;Left=chr2:184039475-184040004;Right=chr2:184045449-184045815
chr2	CG	SV	184045449	184045815	51	-	.	ID=1761;Type=tandem-duplication;Left=chr2:184039475-184040004;Right=chr2:184045449-184045815
chr2	CG	SV	188827864	188829651	30	.	.	ID=3798;Type=deletion;Left=chr2:188827864-188828155+;Right=chr2:188829227-188829651+;Distance=1363;DiscordantMatePairAlignments=30;LeftRepeat=L1ME1:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr2	CG	SV	188827864	188828155	30	+	.	ID=3798;Type=deletion;Left=chr2:188827864-188828155;Right=chr2:188829227-188829651
chr2	CG	SV	188829227	188829651	30	+	.	ID=3798;Type=deletion;Left=chr2:188827864-188828155;Right=chr2:188829227-188829651
chr2	CG	SV	195923061	195923848	18	.	.	ID=3790;Type=deletion;Left=chr2:195923061-195923485+;Right=chr2:195923473-195923848+;Distance=412;DiscordantMatePairAlignments=18;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67052058 (chr2:195923059-195923471);Frequency=0.94
chr2	CG	SV	195923061	195923485	18	+	.	ID=3790;Type=deletion;Left=chr2:195923061-195923485;Right=chr2:195923473-195923848
chr2	CG	SV	195923473	195923848	18	+	.	ID=3790;Type=deletion;Left=chr2:195923061-195923485;Right=chr2:195923473-195923848
chr2	CG	SV	201854903	201858290	101	.	.	ID=3789;Type=deletion;Left=chr2:201854903-201855374+;Right=chr2:201857695-201858290+;Distance=2792;DiscordantMatePairAlignments=101;LeftRepeat=SVA:Other:Other;RightRepeat=;LeftGenes=NM_001080124:+;NM_001080125:+;NM_001228:+;NM_033355:+;NM_033356:+;RightGenes=NM_001080124:+;NM_001080125:+;NM_001228:+;NM_033355:+;NM_033356:+;XRef=rs66948615 (chr2:201854903-201857695);Frequency=0.71
chr2	CG	SV	201854903	201855374	101	+	.	ID=3789;Type=deletion;Left=chr2:201854903-201855374;Right=chr2:201857695-201858290
chr2	CG	SV	201857695	201858290	101	+	.	ID=3789;Type=deletion;Left=chr2:201854903-201855374;Right=chr2:201857695-201858290
chr2	CG	SV	206439444	206440173	14	.	.	ID=3786;Type=complex;Left=chr2:206439444-206439962+;Right=chr2:206439767-206440173+;Distance=323;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35551757 (chr2:206439427-206439750);Frequency=1.00
chr2	CG	SV	206439444	206439962	14	+	.	ID=3786;Type=complex;Left=chr2:206439444-206439962;Right=chr2:206439767-206440173
chr2	CG	SV	206439767	206440173	14	+	.	ID=3786;Type=complex;Left=chr2:206439444-206439962;Right=chr2:206439767-206440173
chr2	CG	SV	206439444	206440338	19	.	.	ID=3787;Type=complex;Left=chr2:206439444-206439860+;Right=chr2:206439767-206440338+;Distance=323;DiscordantMatePairAlignments=19;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6147135 (chr2:206439444-206439767);Frequency=1.00
chr2	CG	SV	206439444	206439860	19	+	.	ID=3787;Type=complex;Left=chr2:206439444-206439860;Right=chr2:206439767-206440338
chr2	CG	SV	206439767	206440338	19	+	.	ID=3787;Type=complex;Left=chr2:206439444-206439860;Right=chr2:206439767-206440338
chr2	CG	SV	208798531	208806068	31	.	.	ID=3782;Type=deletion;Left=chr2:208798531-208798984+;Right=chr2:208805688-208806068+;Distance=7157;DiscordantMatePairAlignments=31;LeftRepeat=AluSq:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	208798531	208798984	31	+	.	ID=3782;Type=deletion;Left=chr2:208798531-208798984;Right=chr2:208805688-208806068
chr2	CG	SV	208805688	208806068	31	+	.	ID=3782;Type=deletion;Left=chr2:208798531-208798984;Right=chr2:208805688-208806068
chr2	CG	SV	216798187	216800917	37	.	.	ID=3781;Type=deletion;Left=chr2:216798187-216798674+;Right=chr2:216800755-216800917+;Distance=2568;DiscordantMatePairAlignments=37;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	216798187	216798674	37	+	.	ID=3781;Type=deletion;Left=chr2:216798187-216798674;Right=chr2:216800755-216800917
chr2	CG	SV	216800755	216800917	37	+	.	ID=3781;Type=deletion;Left=chr2:216798187-216798674;Right=chr2:216800755-216800917
chr2	CG	SV	219760799	219764646	12	.	.	ID=3780;Type=deletion;Left=chr2:219760799-219761301+;Right=chr2:219764477-219764646+;Distance=3678;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	219760799	219761301	12	+	.	ID=3780;Type=deletion;Left=chr2:219760799-219761301;Right=chr2:219764477-219764646
chr2	CG	SV	219764477	219764646	12	+	.	ID=3780;Type=deletion;Left=chr2:219760799-219761301;Right=chr2:219764477-219764646
chr2	CG	SV	221793989	221798279	60	.	.	ID=3778;Type=deletion;Left=chr2:221793989-221794355+;Right=chr2:221797850-221798279+;Distance=3861;DiscordantMatePairAlignments=60;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	221793989	221794355	60	+	.	ID=3778;Type=deletion;Left=chr2:221793989-221794355;Right=chr2:221797850-221798279
chr2	CG	SV	221797850	221798279	60	+	.	ID=3778;Type=deletion;Left=chr2:221793989-221794355;Right=chr2:221797850-221798279
chr2	CG	SV	223468427	223471449	114	.	.	ID=3777;Type=deletion;Left=chr2:223468427-223468970+;Right=chr2:223470920-223471449+;Distance=2493;DiscordantMatePairAlignments=114;LeftRepeat=;RightRepeat=;LeftGenes=NM_004457:+;NM_203372:+;RightGenes=NM_004457:+;NM_203372:+;XRef=rs67796571 (chr2:223468435-223470928);Frequency=0.94
chr2	CG	SV	223468427	223468970	114	+	.	ID=3777;Type=deletion;Left=chr2:223468427-223468970;Right=chr2:223470920-223471449
chr2	CG	SV	223470920	223471449	114	+	.	ID=3777;Type=deletion;Left=chr2:223468427-223468970;Right=chr2:223470920-223471449
chr2	CG	SV	225747827	225748813	104	.	.	ID=3776;Type=deletion;Left=chr2:225747827-225748384+;Right=chr2:225748304-225748813+;Distance=477;DiscordantMatePairAlignments=104;LeftRepeat=Self chain;RightRepeat=Alu:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	225747827	225748384	104	+	.	ID=3776;Type=deletion;Left=chr2:225747827-225748384;Right=chr2:225748304-225748813
chr2	CG	SV	225748304	225748813	104	+	.	ID=3776;Type=deletion;Left=chr2:225747827-225748384;Right=chr2:225748304-225748813
chr2	CG	SV	226873670	226879815	18	.	.	ID=3775;Type=deletion;Left=chr2:226873670-226873978+;Right=chr2:226879415-226879815+;Distance=5745;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72094991 (chr2:226873668-226879413);Frequency=0.65
chr2	CG	SV	226873670	226873978	18	+	.	ID=3775;Type=deletion;Left=chr2:226873670-226873978;Right=chr2:226879415-226879815
chr2	CG	SV	226879415	226879815	18	+	.	ID=3775;Type=deletion;Left=chr2:226873670-226873978;Right=chr2:226879415-226879815
chr2	CG	SV	237596582	237612289	44	.	.	ID=3771;Type=deletion;Left=chr2:237596582-237597034+;Right=chr2:237611957-237612289+;Distance=15375;DiscordantMatePairAlignments=44;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	237596582	237597034	44	+	.	ID=3771;Type=deletion;Left=chr2:237596582-237597034;Right=chr2:237611957-237612289
chr2	CG	SV	237611957	237612289	44	+	.	ID=3771;Type=deletion;Left=chr2:237596582-237597034;Right=chr2:237611957-237612289
chr2	CG	SV	239732680	239749389	67	.	.	ID=4805;Type=probable-inversion;Left=chr2:239732680-239733144+;Right=chr2:239748789-239749389-;Distance=16709;DiscordantMatePairAlignments=67;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_006037:-;RightGenes=NM_006037:-;XRef=;Frequency=0.00
chr2	CG	SV	239732680	239733144	67	+	.	ID=4805;Type=probable-inversion;Left=chr2:239732680-239733144;Right=chr2:239748789-239749389
chr2	CG	SV	239748789	239749389	67	+	.	ID=4805;Type=probable-inversion;Left=chr2:239732680-239733144;Right=chr2:239748789-239749389
chr2	CG	SV	240607627	240608503	10	.	.	ID=3769;Type=deletion;Left=chr2:240607627-240608115+;Right=chr2:240607949-240608503+;Distance=322;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_004544:-;RightGenes=NM_004544:-;XRef=rs10705194 (chr2:240607627-240607949);Frequency=0.82
chr2	CG	SV	240607627	240608115	10	+	.	ID=3769;Type=deletion;Left=chr2:240607627-240608115;Right=chr2:240607949-240608503
chr2	CG	SV	240607949	240608503	10	+	.	ID=3769;Type=deletion;Left=chr2:240607627-240608115;Right=chr2:240607949-240608503
chr2	CG	SV	240630257	240631126	17	.	.	ID=3768;Type=deletion;Left=chr2:240630257-240630728+;Right=chr2:240630818-240631126+;Distance=561;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem period 14;Tandem period 56;Tandem period 84;RightRepeat=Self chain;Tandem period 14;Tandem period 56;Tandem period 84;LeftGenes=NM_001080835:-;RightGenes=NM_001080835:-;XRef=;Frequency=0.59
chr2	CG	SV	240630257	240630728	17	+	.	ID=3768;Type=deletion;Left=chr2:240630257-240630728;Right=chr2:240630818-240631126
chr2	CG	SV	240630818	240631126	17	+	.	ID=3768;Type=deletion;Left=chr2:240630257-240630728;Right=chr2:240630818-240631126
chr2	CG	SV	240890846	240891294	11	.	.	ID=3767;Type=deletion;Left=chr2:240890846-240891505+;Right=chr2:240891209-240891294+;Distance=363;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 363;Tandem period 45;Tandem period 90;RightRepeat=Self chain;Tandem period 363;Tandem period 45;LeftGenes=;RightGenes=;XRef=rs71727712 (chr2:240890419-240890782);Frequency=0.94
chr2	CG	SV	240890846	240891505	11	+	.	ID=3767;Type=deletion;Left=chr2:240890846-240891505;Right=chr2:240891209-240891294
chr2	CG	SV	240891209	240891294	11	+	.	ID=3767;Type=deletion;Left=chr2:240890846-240891505;Right=chr2:240891209-240891294
chr2	CG	SV	241115145	241115873	10	.	.	ID=1758;Type=tandem-duplication;Left=chr2:241115145-241115358-;Right=chr2:241115622-241115873-;Distance=515;DiscordantMatePairAlignments=10;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=NM_016552:-;NM_017844:-;RightGenes=NM_016552:-;NM_017844:-;XRef=;Frequency=0.88
chr2	CG	SV	241115145	241115358	10	-	.	ID=1758;Type=tandem-duplication;Left=chr2:241115145-241115358;Right=chr2:241115622-241115873
chr2	CG	SV	241115622	241115873	10	-	.	ID=1758;Type=tandem-duplication;Left=chr2:241115145-241115358;Right=chr2:241115622-241115873
chr3	CG	SV	1191561	1192449	38	.	.	ID=1756;Type=tandem-duplication;Left=chr3:1191561-1191890-;Right=chr3:1192032-1192449-;Distance=559;DiscordantMatePairAlignments=38;LeftRepeat=AluJb:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=NM_014461:+;RightGenes=NM_014461:+;XRef=;Frequency=0.12
chr3	CG	SV	1191561	1191890	38	-	.	ID=1756;Type=tandem-duplication;Left=chr3:1191561-1191890;Right=chr3:1192032-1192449
chr3	CG	SV	1192032	1192449	38	-	.	ID=1756;Type=tandem-duplication;Left=chr3:1191561-1191890;Right=chr3:1192032-1192449
chr3	CG	SV	3197768	3557169	53	.	.	ID=1755;Type=tandem-duplication;Left=chr3:3197768-3198211-;Right=chr3:3556654-3557169-;Distance=358958;DiscordantMatePairAlignments=53;LeftRepeat=;RightRepeat=MIR3:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	3197768	3198211	53	-	.	ID=1755;Type=tandem-duplication;Left=chr3:3197768-3198211;Right=chr3:3556654-3557169
chr3	CG	SV	3556654	3557169	53	-	.	ID=1755;Type=tandem-duplication;Left=chr3:3197768-3198211;Right=chr3:3556654-3557169
chr3	CG	SV	8300639	8302349	64	.	.	ID=3758;Type=deletion;Left=chr3:8300639-8301119+;Right=chr3:8301812-8302349+;Distance=1173;DiscordantMatePairAlignments=64;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71052654 (chr3:8300639-8301812);Frequency=0.59
chr3	CG	SV	8300639	8301119	64	+	.	ID=3758;Type=deletion;Left=chr3:8300639-8301119;Right=chr3:8301812-8302349
chr3	CG	SV	8301812	8302349	64	+	.	ID=3758;Type=deletion;Left=chr3:8300639-8301119;Right=chr3:8301812-8302349
chr3	CG	SV	10372475	10373140	19	.	.	ID=3756;Type=complex;Left=chr3:10372475-10372982+;Right=chr3:10372841-10373140+;Distance=366;DiscordantMatePairAlignments=19;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TG;LeftGenes=NM_001001331:-;NM_001683:-;RightGenes=NM_001001331:-;NM_001683:-;XRef=;Frequency=1.00
chr3	CG	SV	10372475	10372982	19	+	.	ID=3756;Type=complex;Left=chr3:10372475-10372982;Right=chr3:10372841-10373140
chr3	CG	SV	10372841	10373140	19	+	.	ID=3756;Type=complex;Left=chr3:10372475-10372982;Right=chr3:10372841-10373140
chr3	CG	SV	10372475	10373331	39	.	.	ID=3757;Type=complex;Left=chr3:10372475-10372891+;Right=chr3:10372841-10373331+;Distance=366;DiscordantMatePairAlignments=39;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TG;LeftGenes=NM_001001331:-;NM_001683:-;RightGenes=NM_001001331:-;NM_001683:-;XRef=;Frequency=1.00
chr3	CG	SV	10372475	10372891	39	+	.	ID=3757;Type=complex;Left=chr3:10372475-10372891;Right=chr3:10372841-10373331
chr3	CG	SV	10372841	10373331	39	+	.	ID=3757;Type=complex;Left=chr3:10372475-10372891;Right=chr3:10372841-10373331
chr3	CG	SV	22067365	22073347	58	.	.	ID=3750;Type=deletion;Left=chr3:22067365-22067718+;Right=chr3:22072813-22073347+;Distance=5448;DiscordantMatePairAlignments=58;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67464987 (chr3:22067365-22072813);Frequency=0.88
chr3	CG	SV	22067365	22067718	58	+	.	ID=3750;Type=deletion;Left=chr3:22067365-22067718;Right=chr3:22072813-22073347
chr3	CG	SV	22072813	22073347	58	+	.	ID=3750;Type=deletion;Left=chr3:22067365-22067718;Right=chr3:22072813-22073347
chr3	CG	SV	25005891	25007669	72	.	.	ID=3748;Type=deletion;Left=chr3:25005891-25006237+;Right=chr3:25007253-25007669+;Distance=1362;DiscordantMatePairAlignments=72;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=L1ME3B:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72404999 (chr3:25005891-25007246);Frequency=0.65
chr3	CG	SV	25005891	25006237	72	+	.	ID=3748;Type=deletion;Left=chr3:25005891-25006237;Right=chr3:25007253-25007669
chr3	CG	SV	25007253	25007669	72	+	.	ID=3748;Type=deletion;Left=chr3:25005891-25006237;Right=chr3:25007253-25007669
chr3	CG	SV	26425974	26427741	70	.	.	ID=3747;Type=deletion;Left=chr3:26425974-26426417+;Right=chr3:26427303-26427741+;Distance=1329;DiscordantMatePairAlignments=70;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66805914 (chr3:26425974-26427303);Frequency=0.94
chr3	CG	SV	26425974	26426417	70	+	.	ID=3747;Type=deletion;Left=chr3:26425974-26426417;Right=chr3:26427303-26427741
chr3	CG	SV	26427303	26427741	70	+	.	ID=3747;Type=deletion;Left=chr3:26425974-26426417;Right=chr3:26427303-26427741
chr3	CG	SV	31908032	32331754	40	.	.	ID=1753;Type=tandem-duplication;Left=chr3:31908032-31908327-;Right=chr3:32331290-32331754-;Distance=423427;DiscordantMatePairAlignments=40;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_017784:-;RightGenes=NM_178868:+;XRef=;Frequency=0.00
chr3	CG	SV	31908032	31908327	40	-	.	ID=1753;Type=tandem-duplication;Left=chr3:31908032-31908327;Right=chr3:32331290-32331754
chr3	CG	SV	32331290	32331754	40	-	.	ID=1753;Type=tandem-duplication;Left=chr3:31908032-31908327;Right=chr3:32331290-32331754
chr3	CG	SV	32077056	32083379	164	.	.	ID=3746;Type=deletion;Left=chr3:32077056-32077528+;Right=chr3:32082889-32083379+;Distance=5833;DiscordantMatePairAlignments=164;LeftRepeat=;RightRepeat=MER31B:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs71946771 (chr3:32077054-32082887);Frequency=0.94
chr3	CG	SV	32077056	32077528	164	+	.	ID=3746;Type=deletion;Left=chr3:32077056-32077528;Right=chr3:32082889-32083379
chr3	CG	SV	32082889	32083379	164	+	.	ID=3746;Type=deletion;Left=chr3:32077056-32077528;Right=chr3:32082889-32083379
chr3	CG	SV	32176833	32177662	18	.	.	ID=3745;Type=deletion;Left=chr3:32176833-32177298+;Right=chr3:32177165-32177662+;Distance=332;DiscordantMatePairAlignments=18;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Tandem GGAT;RightRepeat=;LeftGenes=NM_015141:+;RightGenes=NM_015141:+;XRef=rs72009600 (chr3:32176730-32177061);Frequency=0.47
chr3	CG	SV	32176833	32177298	18	+	.	ID=3745;Type=deletion;Left=chr3:32176833-32177298;Right=chr3:32177165-32177662
chr3	CG	SV	32177165	32177662	18	+	.	ID=3745;Type=deletion;Left=chr3:32176833-32177298;Right=chr3:32177165-32177662
chr3	CG	SV	32781826	32783382	29	.	.	ID=3744;Type=deletion;Left=chr3:32781826-32782394+;Right=chr3:32783141-32783382+;Distance=1315;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_015442:+;RightGenes=NM_015442:+;XRef=rs72274862 (chr3:32781540-32782847);Frequency=0.94
chr3	CG	SV	32781826	32782394	29	+	.	ID=3744;Type=deletion;Left=chr3:32781826-32782394;Right=chr3:32783141-32783382
chr3	CG	SV	32783141	32783382	29	+	.	ID=3744;Type=deletion;Left=chr3:32781826-32782394;Right=chr3:32783141-32783382
chr3	CG	SV	33528209	33529494	14	.	.	ID=3743;Type=deletion;Left=chr3:33528209-33528592+;Right=chr3:33529095-33529494+;Distance=886;DiscordantMatePairAlignments=14;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_015097:-;RightGenes=NM_015097:-;XRef=;Frequency=0.82
chr3	CG	SV	33528209	33528592	14	+	.	ID=3743;Type=deletion;Left=chr3:33528209-33528592;Right=chr3:33529095-33529494
chr3	CG	SV	33529095	33529494	14	+	.	ID=3743;Type=deletion;Left=chr3:33528209-33528592;Right=chr3:33529095-33529494
chr3	CG	SV	42813372	42816280	47	.	.	ID=3741;Type=deletion;Left=chr3:42813372-42813800+;Right=chr3:42815826-42816280+;Distance=2454;DiscordantMatePairAlignments=47;LeftRepeat=LTR8:LTR:ERV1;RightRepeat=LTR8:LTR:ERV1;LeftGenes=NM_001099668:-;NM_001099669:-;NM_014056:-;RightGenes=NM_001099668:-;NM_001099669:-;NM_014056:-;XRef=rs71052669 (chr3:42813377-42815831);Frequency=1.00
chr3	CG	SV	42813372	42813800	47	+	.	ID=3741;Type=deletion;Left=chr3:42813372-42813800;Right=chr3:42815826-42816280
chr3	CG	SV	42815826	42816280	47	+	.	ID=3741;Type=deletion;Left=chr3:42813372-42813800;Right=chr3:42815826-42816280
chr3	CG	SV	44715490	44717489	18	.	.	ID=770;Type=distal-duplication;Left=chr3:44715490-44715994-;Right=chr3:44717289-44717489+;Distance=1295;DiscordantMatePairAlignments=18;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	44715490	44715994	18	-	.	ID=770;Type=distal-duplication;Left=chr3:44715490-44715994;Right=chr3:44717289-44717489
chr3	CG	SV	44717289	44717489	18	-	.	ID=770;Type=distal-duplication;Left=chr3:44715490-44715994;Right=chr3:44717289-44717489
chr3	CG	SV	44716161	44717125	21	.	.	ID=4803;Type=distal-duplication;Left=chr3:44716161-44716477+;Right=chr3:44716773-44717125-;Distance=964;DiscordantMatePairAlignments=21;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	44716161	44716477	21	+	.	ID=4803;Type=distal-duplication;Left=chr3:44716161-44716477;Right=chr3:44716773-44717125
chr3	CG	SV	44716773	44717125	21	+	.	ID=4803;Type=distal-duplication;Left=chr3:44716161-44716477;Right=chr3:44716773-44717125
chr3	CG	SV	45584921	45585765	64	.	.	ID=3739;Type=deletion;Left=chr3:45584921-45585404+;Right=chr3:45585337-45585765+;Distance=416;DiscordantMatePairAlignments=64;LeftRepeat=L1PA14:LINE:L1;RightRepeat=L1PA14:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71052671 (chr3:45584851-45585267);Frequency=1.00
chr3	CG	SV	45584921	45585404	64	+	.	ID=3739;Type=deletion;Left=chr3:45584921-45585404;Right=chr3:45585337-45585765
chr3	CG	SV	45585337	45585765	64	+	.	ID=3739;Type=deletion;Left=chr3:45584921-45585404;Right=chr3:45585337-45585765
chr3	CG	SV	47465673	47468975	78	.	.	ID=3737;Type=deletion;Left=chr3:47465673-47466126+;Right=chr3:47468446-47468975+;Distance=2773;DiscordantMatePairAlignments=78;LeftRepeat=L1MD2:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=NM_012235:-;RightGenes=NM_012235:-;XRef=rs71996089 (chr3:47465671-47468444);Frequency=0.47
chr3	CG	SV	47465673	47466126	78	+	.	ID=3737;Type=deletion;Left=chr3:47465673-47466126;Right=chr3:47468446-47468975
chr3	CG	SV	47468446	47468975	78	+	.	ID=3737;Type=deletion;Left=chr3:47465673-47466126;Right=chr3:47468446-47468975
chr3	CG	SV	49469291	49470050	17	.	.	ID=3735;Type=deletion;Left=chr3:49469291-49469761+;Right=chr3:49469620-49470050+;Distance=329;DiscordantMatePairAlignments=17;LeftRepeat=MIRb:SINE:MIR;Tandem T;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66794416 (chr3:49469291-49469620);Frequency=1.00
chr3	CG	SV	49469291	49469761	17	+	.	ID=3735;Type=deletion;Left=chr3:49469291-49469761;Right=chr3:49469620-49470050
chr3	CG	SV	49469620	49470050	17	+	.	ID=3735;Type=deletion;Left=chr3:49469291-49469761;Right=chr3:49469620-49470050
chr3	CG	SV	63109897	63110798	29	.	.	ID=3732;Type=deletion;Left=chr3:63109897-63110349+;Right=chr3:63110350-63110798+;Distance=453;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs68090124 (chr3:63109897-63110350);Frequency=0.00
chr3	CG	SV	63109897	63110349	29	+	.	ID=3732;Type=deletion;Left=chr3:63109897-63110349;Right=chr3:63110350-63110798
chr3	CG	SV	63110350	63110798	29	+	.	ID=3732;Type=deletion;Left=chr3:63109897-63110349;Right=chr3:63110350-63110798
chr3	CG	SV	65092943	65095025	47	.	.	ID=3731;Type=deletion;Left=chr3:65092943-65093527+;Right=chr3:65094815-65095025+;Distance=1872;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr3	CG	SV	65092943	65093527	47	+	.	ID=3731;Type=deletion;Left=chr3:65092943-65093527;Right=chr3:65094815-65095025
chr3	CG	SV	65094815	65095025	47	+	.	ID=3731;Type=deletion;Left=chr3:65092943-65093527;Right=chr3:65094815-65095025
chr3	CG	SV	66034439	66035576	38	.	.	ID=1746;Type=tandem-duplication;Left=chr3:66034439-66034969-;Right=chr3:66035352-66035576-;Distance=607;DiscordantMatePairAlignments=38;LeftRepeat=Alu:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr3	CG	SV	66034439	66034969	38	-	.	ID=1746;Type=tandem-duplication;Left=chr3:66034439-66034969;Right=chr3:66035352-66035576
chr3	CG	SV	66035352	66035576	38	-	.	ID=1746;Type=tandem-duplication;Left=chr3:66034439-66034969;Right=chr3:66035352-66035576
chr3	CG	SV	67576396	67579967	22	.	.	ID=3730;Type=deletion;Left=chr3:67576396-67576809+;Right=chr3:67579500-67579967+;Distance=3104;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_003848:-;RightGenes=NM_003848:-;XRef=rs71052690 (chr3:67576398-67579502);Frequency=1.00
chr3	CG	SV	67576396	67576809	22	+	.	ID=3730;Type=deletion;Left=chr3:67576396-67576809;Right=chr3:67579500-67579967
chr3	CG	SV	67579500	67579967	22	+	.	ID=3730;Type=deletion;Left=chr3:67576396-67576809;Right=chr3:67579500-67579967
chr3	CG	SV	68822377	68830981	15	.	.	ID=3729;Type=deletion;Left=chr3:68822377-68822650+;Right=chr3:68830552-68830981+;Distance=8175;DiscordantMatePairAlignments=15;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67150556 (chr3:68822377-68830553);Frequency=0.88
chr3	CG	SV	68822377	68822650	15	+	.	ID=3729;Type=deletion;Left=chr3:68822377-68822650;Right=chr3:68830552-68830981
chr3	CG	SV	68830552	68830981	15	+	.	ID=3729;Type=deletion;Left=chr3:68822377-68822650;Right=chr3:68830552-68830981
chr3	CG	SV	75359579	75361903	58	.	.	ID=3727;Type=deletion;Left=chr3:75359579-75360084+;Right=chr3:75361608-75361903+;Distance=2029;DiscordantMatePairAlignments=58;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72396976 (chr3:75359579-75361608);Frequency=1.00
chr3	CG	SV	75359579	75360084	58	+	.	ID=3727;Type=deletion;Left=chr3:75359579-75360084;Right=chr3:75361608-75361903
chr3	CG	SV	75361608	75361903	58	+	.	ID=3727;Type=deletion;Left=chr3:75359579-75360084;Right=chr3:75361608-75361903
chr3	CG	SV	75779122	75780014	27	.	.	ID=3725;Type=deletion;Left=chr3:75779122-75779543+;Right=chr3:75779615-75780014+;Distance=493;DiscordantMatePairAlignments=27;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	75779122	75779543	27	+	.	ID=3725;Type=deletion;Left=chr3:75779122-75779543;Right=chr3:75779615-75780014
chr3	CG	SV	75779615	75780014	27	+	.	ID=3725;Type=deletion;Left=chr3:75779122-75779543;Right=chr3:75779615-75780014
chr3	CG	SV	75869985	75870814	15	.	.	ID=3723;Type=deletion;Left=chr3:75869985-75870418+;Right=chr3:75870489-75870814+;Distance=504;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem period 84;RightRepeat=Self chain;LeftGenes=NM_001128223:-;RightGenes=NM_001128223:-;XRef=;Frequency=0.88
chr3	CG	SV	75869985	75870418	15	+	.	ID=3723;Type=deletion;Left=chr3:75869985-75870418;Right=chr3:75870489-75870814
chr3	CG	SV	75870489	75870814	15	+	.	ID=3723;Type=deletion;Left=chr3:75869985-75870418;Right=chr3:75870489-75870814
chr3	CG	SV	76097055	76097427	44	.	.	ID=1744;Type=tandem-duplication;Left=chr3:76097055-76097246-;Right=chr3:76097271-76097427-;Distance=181;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	76097055	76097246	44	-	.	ID=1744;Type=tandem-duplication;Left=chr3:76097055-76097246;Right=chr3:76097271-76097427
chr3	CG	SV	76097271	76097427	44	-	.	ID=1744;Type=tandem-duplication;Left=chr3:76097055-76097246;Right=chr3:76097271-76097427
chr3	CG	SV	76901816	76969883	83	.	.	ID=3722;Type=deletion;Left=chr3:76901816-76902233+;Right=chr3:76969495-76969883+;Distance=67679;DiscordantMatePairAlignments=83;LeftRepeat=;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	76901816	76902233	83	+	.	ID=3722;Type=deletion;Left=chr3:76901816-76902233;Right=chr3:76969495-76969883
chr3	CG	SV	76969495	76969883	83	+	.	ID=3722;Type=deletion;Left=chr3:76901816-76902233;Right=chr3:76969495-76969883
chr3	CG	SV	81008004	81009740	45	.	.	ID=3720;Type=deletion;Left=chr3:81008004-81008373+;Right=chr3:81009297-81009740+;Distance=1293;DiscordantMatePairAlignments=45;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71052702 (chr3:81008004-81009297);Frequency=0.88
chr3	CG	SV	81008004	81008373	45	+	.	ID=3720;Type=deletion;Left=chr3:81008004-81008373;Right=chr3:81009297-81009740
chr3	CG	SV	81009297	81009740	45	+	.	ID=3720;Type=deletion;Left=chr3:81008004-81008373;Right=chr3:81009297-81009740
chr3	CG	SV	84187632	84190546	53	.	.	ID=3717;Type=deletion;Left=chr3:84187632-84188083+;Right=chr3:84190074-84190546+;Distance=2442;DiscordantMatePairAlignments=53;LeftRepeat=L1MC1:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr3	CG	SV	84187632	84188083	53	+	.	ID=3717;Type=deletion;Left=chr3:84187632-84188083;Right=chr3:84190074-84190546
chr3	CG	SV	84190074	84190546	53	+	.	ID=3717;Type=deletion;Left=chr3:84187632-84188083;Right=chr3:84190074-84190546
chr3	CG	SV	100426496	100432614	17	.	.	ID=3714;Type=deletion;Left=chr3:100426496-100426824+;Right=chr3:100432208-100432614+;Distance=5712;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=L1PA15:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr3	CG	SV	100426496	100426824	17	+	.	ID=3714;Type=deletion;Left=chr3:100426496-100426824;Right=chr3:100432208-100432614
chr3	CG	SV	100432208	100432614	17	+	.	ID=3714;Type=deletion;Left=chr3:100426496-100426824;Right=chr3:100432208-100432614
chr3	CG	SV	101111472	101112775	156	.	.	ID=3712;Type=deletion;Left=chr3:101111472-101112047+;Right=chr3:101112321-101112775+;Distance=849;DiscordantMatePairAlignments=156;LeftRepeat=;RightRepeat=;LeftGenes=NM_001042459:-;NM_032359:+;NM_182909:-;RightGenes=NM_001042459:-;NM_032359:+;NM_182909:-;XRef=rs68054323 (chr3:101111472-101112320);Frequency=0.47
chr3	CG	SV	101111472	101112047	156	+	.	ID=3712;Type=deletion;Left=chr3:101111472-101112047;Right=chr3:101112321-101112775
chr3	CG	SV	101112321	101112775	156	+	.	ID=3712;Type=deletion;Left=chr3:101111472-101112047;Right=chr3:101112321-101112775
chr3	CG	SV	103766477	103767339	12	.	.	ID=3710;Type=deletion;Left=chr3:103766477-103766962+;Right=chr3:103766815-103767339+;Distance=338;DiscordantMatePairAlignments=12;LeftRepeat=Tandem T;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67864955 (chr3:103766477-103766815);Frequency=0.76
chr3	CG	SV	103766477	103766962	12	+	.	ID=3710;Type=deletion;Left=chr3:103766477-103766962;Right=chr3:103766815-103767339
chr3	CG	SV	103766815	103767339	12	+	.	ID=3710;Type=deletion;Left=chr3:103766477-103766962;Right=chr3:103766815-103767339
chr3	CG	SV	106558358	106561080	54	.	.	ID=3708;Type=deletion;Left=chr3:106558358-106558779+;Right=chr3:106560683-106561080+;Distance=2325;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr3	CG	SV	106558358	106558779	54	+	.	ID=3708;Type=deletion;Left=chr3:106558358-106558779;Right=chr3:106560683-106561080
chr3	CG	SV	106560683	106561080	54	+	.	ID=3708;Type=deletion;Left=chr3:106558358-106558779;Right=chr3:106560683-106561080
chr3	CG	SV	107311554	107314772	37	.	.	ID=3706;Type=deletion;Left=chr3:107311554-107311979+;Right=chr3:107314321-107314772+;Distance=2767;DiscordantMatePairAlignments=37;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr3	CG	SV	107311554	107311979	37	+	.	ID=3706;Type=deletion;Left=chr3:107311554-107311979;Right=chr3:107314321-107314772
chr3	CG	SV	107314321	107314772	37	+	.	ID=3706;Type=deletion;Left=chr3:107311554-107311979;Right=chr3:107314321-107314772
chr3	CG	SV	113950091	113950963	22	.	.	ID=3704;Type=deletion;Left=chr3:113950091-113950423+;Right=chr3:113950421-113950963+;Distance=330;DiscordantMatePairAlignments=22;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10524801 (chr3:113950091-113950421);Frequency=1.00
chr3	CG	SV	113950091	113950423	22	+	.	ID=3704;Type=deletion;Left=chr3:113950091-113950423;Right=chr3:113950421-113950963
chr3	CG	SV	113950421	113950963	22	+	.	ID=3704;Type=deletion;Left=chr3:113950091-113950423;Right=chr3:113950421-113950963
chr3	CG	SV	117687524	117688355	11	.	.	ID=3701;Type=deletion;Left=chr3:117687524-117688071+;Right=chr3:117687868-117688355+;Distance=344;DiscordantMatePairAlignments=11;LeftRepeat=L1PA12:LINE:L1;RightRepeat=L1PA12:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr3	CG	SV	117687524	117688071	11	+	.	ID=3701;Type=deletion;Left=chr3:117687524-117688071;Right=chr3:117687868-117688355
chr3	CG	SV	117687868	117688355	11	+	.	ID=3701;Type=deletion;Left=chr3:117687524-117688071;Right=chr3:117687868-117688355
chr3	CG	SV	121376675	121377652	99	.	.	ID=3698;Type=deletion;Left=chr3:121376675-121377197+;Right=chr3:121377135-121377652+;Distance=460;DiscordantMatePairAlignments=99;LeftRepeat=;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=NM_001168271:-;NM_153002:-;RightGenes=NM_001168271:-;NM_153002:-;XRef=rs67310162 (chr3:121376675-121377135);Frequency=1.00
chr3	CG	SV	121376675	121377197	99	+	.	ID=3698;Type=deletion;Left=chr3:121376675-121377197;Right=chr3:121377135-121377652
chr3	CG	SV	121377135	121377652	99	+	.	ID=3698;Type=deletion;Left=chr3:121376675-121377197;Right=chr3:121377135-121377652
chr3	CG	SV	124680312	124681052	15	.	.	ID=3697;Type=deletion;Left=chr3:124680312-124680840+;Right=chr3:124680665-124681052+;Distance=353;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem period 32;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	124680312	124680840	15	+	.	ID=3697;Type=deletion;Left=chr3:124680312-124680840;Right=chr3:124680665-124681052
chr3	CG	SV	124680665	124681052	15	+	.	ID=3697;Type=deletion;Left=chr3:124680312-124680840;Right=chr3:124680665-124681052
chr3	CG	SV	126372743	126374100	16	.	.	ID=3695;Type=deletion;Left=chr3:126372743-126373013+;Right=chr3:126373513-126374100+;Distance=770;DiscordantMatePairAlignments=16;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_024628:-;RightGenes=NM_024628:-;XRef=rs66464009 (chr3:126372743-126373513);Frequency=1.00
chr3	CG	SV	126372743	126373013	16	+	.	ID=3695;Type=deletion;Left=chr3:126372743-126373013;Right=chr3:126373513-126374100
chr3	CG	SV	126373513	126374100	16	+	.	ID=3695;Type=deletion;Left=chr3:126372743-126373013;Right=chr3:126373513-126374100
chr3	CG	SV	126418990	126420274	51	.	.	ID=3694;Type=deletion;Left=chr3:126418990-126419221+;Right=chr3:126419859-126420274+;Distance=869;DiscordantMatePairAlignments=51;LeftRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72308239 (chr3:126418985-126419853);Frequency=0.82
chr3	CG	SV	126418990	126419221	51	+	.	ID=3694;Type=deletion;Left=chr3:126418990-126419221;Right=chr3:126419859-126420274
chr3	CG	SV	126419859	126420274	51	+	.	ID=3694;Type=deletion;Left=chr3:126418990-126419221;Right=chr3:126419859-126420274
chr3	CG	SV	133471886	133478097	26	.	.	ID=3689;Type=deletion;Left=chr3:133471886-133472287+;Right=chr3:133477843-133478097+;Distance=5957;DiscordantMatePairAlignments=26;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67599226 (chr3:133471815-133477774);Frequency=0.41
chr3	CG	SV	133471886	133472287	26	+	.	ID=3689;Type=deletion;Left=chr3:133471886-133472287;Right=chr3:133477843-133478097
chr3	CG	SV	133477843	133478097	26	+	.	ID=3689;Type=deletion;Left=chr3:133471886-133472287;Right=chr3:133477843-133478097
chr3	CG	SV	134986459	134988212	125	.	.	ID=3688;Type=deletion;Left=chr3:134986459-134986878+;Right=chr3:134987775-134988212+;Distance=1316;DiscordantMatePairAlignments=125;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71056134 (chr3:134986472-134987788);Frequency=0.53
chr3	CG	SV	134986459	134986878	125	+	.	ID=3688;Type=deletion;Left=chr3:134986459-134986878;Right=chr3:134987775-134988212
chr3	CG	SV	134987775	134988212	125	+	.	ID=3688;Type=deletion;Left=chr3:134986459-134986878;Right=chr3:134987775-134988212
chr3	CG	SV	136156596	136157737	161	.	.	ID=3687;Type=deletion;Left=chr3:136156596-136157133+;Right=chr3:136157249-136157737+;Distance=653;DiscordantMatePairAlignments=161;LeftRepeat=;RightRepeat=;LeftGenes=NM_004441:+;RightGenes=NM_004441:+;XRef=rs68037545 (chr3:136156592-136157245);Frequency=0.82
chr3	CG	SV	136156596	136157133	161	+	.	ID=3687;Type=deletion;Left=chr3:136156596-136157133;Right=chr3:136157249-136157737
chr3	CG	SV	136157249	136157737	161	+	.	ID=3687;Type=deletion;Left=chr3:136156596-136157133;Right=chr3:136157249-136157737
chr3	CG	SV	142103520	142105048	49	.	.	ID=1739;Type=tandem-duplication;Left=chr3:142103520-142103797-;Right=chr3:142104543-142105048-;Distance=1251;DiscordantMatePairAlignments=49;LeftRepeat=Self chain;RightRepeat=Tigger3b:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr3	CG	SV	142103520	142103797	49	-	.	ID=1739;Type=tandem-duplication;Left=chr3:142103520-142103797;Right=chr3:142104543-142105048
chr3	CG	SV	142104543	142105048	49	-	.	ID=1739;Type=tandem-duplication;Left=chr3:142103520-142103797;Right=chr3:142104543-142105048
chr3	CG	SV	147867880	147873213	11	.	.	ID=3680;Type=complex;Left=chr3:147867880-147868109+;Right=chr3:147873094-147873213+;Distance=5214;DiscordantMatePairAlignments=11;LeftRepeat=L2:LINE:L2;RightRepeat=L1PA16:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	147867880	147868109	11	+	.	ID=3680;Type=complex;Left=chr3:147867880-147868109;Right=chr3:147873094-147873213
chr3	CG	SV	147873094	147873213	11	+	.	ID=3680;Type=complex;Left=chr3:147867880-147868109;Right=chr3:147873094-147873213
chr3	CG	SV	147867880	147877847	30	.	.	ID=3681;Type=complex;Left=chr3:147867880-147868330+;Right=chr3:147877553-147877847+;Distance=9673;DiscordantMatePairAlignments=30;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs72156653 (chr3:147867880-147877553);Frequency=0.94
chr3	CG	SV	147867880	147868330	30	+	.	ID=3681;Type=complex;Left=chr3:147867880-147868330;Right=chr3:147877553-147877847
chr3	CG	SV	147877553	147877847	30	+	.	ID=3681;Type=complex;Left=chr3:147867880-147868330;Right=chr3:147877553-147877847
chr3	CG	SV	147872658	147877855	49	.	.	ID=1738;Type=complex;Left=chr3:147872658-147873094-;Right=chr3:147877553-147877855-;Distance=4761;DiscordantMatePairAlignments=49;LeftRepeat=L1PA16:LINE:L1;RightRepeat=THE1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	147872658	147873094	49	-	.	ID=1738;Type=complex;Left=chr3:147872658-147873094;Right=chr3:147877553-147877855
chr3	CG	SV	147877553	147877855	49	-	.	ID=1738;Type=complex;Left=chr3:147872658-147873094;Right=chr3:147877553-147877855
chr3	CG	SV	150751166	150753365	57	.	.	ID=3675;Type=deletion;Left=chr3:150751166-150751538+;Right=chr3:150752841-150753365+;Distance=1675;DiscordantMatePairAlignments=57;LeftRepeat=;RightRepeat=;LeftGenes=NM_001168278:-;NM_001168280:-;NM_015472:-;RightGenes=NM_001168278:-;NM_001168280:-;NM_015472:-;XRef=rs67511215 (chr3:150751166-150752841);Frequency=0.35
chr3	CG	SV	150751166	150751538	57	+	.	ID=3675;Type=deletion;Left=chr3:150751166-150751538;Right=chr3:150752841-150753365
chr3	CG	SV	150752841	150753365	57	+	.	ID=3675;Type=deletion;Left=chr3:150751166-150751538;Right=chr3:150752841-150753365
chr3	CG	SV	153794423	153796281	94	.	.	ID=3674;Type=deletion;Left=chr3:153794423-153794904+;Right=chr3:153795855-153796281+;Distance=1432;DiscordantMatePairAlignments=94;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67110903 (chr3:153794413-153795845);Frequency=1.00
chr3	CG	SV	153794423	153794904	94	+	.	ID=3674;Type=deletion;Left=chr3:153794423-153794904;Right=chr3:153795855-153796281
chr3	CG	SV	153795855	153796281	94	+	.	ID=3674;Type=deletion;Left=chr3:153794423-153794904;Right=chr3:153795855-153796281
chr3	CG	SV	159833434	159835006	13	.	.	ID=3672;Type=deletion;Left=chr3:159833434-159833829+;Right=chr3:159834606-159835006+;Distance=1172;DiscordantMatePairAlignments=13;LeftRepeat=Charlie3:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71056148 (chr3:159833434-159834606);Frequency=0.53
chr3	CG	SV	159833434	159833829	13	+	.	ID=3672;Type=deletion;Left=chr3:159833434-159833829;Right=chr3:159834606-159835006
chr3	CG	SV	159834606	159835006	13	+	.	ID=3672;Type=deletion;Left=chr3:159833434-159833829;Right=chr3:159834606-159835006
chr3	CG	SV	164008436	164030335	147	.	.	ID=4791;Type=complex;Left=chr3:164008436-164008869+;Right=chr3:164029831-164030335-;Distance=21899;DiscordantMatePairAlignments=147;LeftRepeat=MIR:SINE:MIR;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr3	CG	SV	164008436	164008869	147	+	.	ID=4791;Type=complex;Left=chr3:164008436-164008869;Right=chr3:164029831-164030335
chr3	CG	SV	164029831	164030335	147	+	.	ID=4791;Type=complex;Left=chr3:164008436-164008869;Right=chr3:164029831-164030335
chr3	CG	SV	164027575	164030619	50	.	.	ID=761;Type=complex;Left=chr3:164027575-164028056-;Right=chr3:164030352-164030619+;Distance=2296;DiscordantMatePairAlignments=50;LeftRepeat=THE1C:LTR:MaLR;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr3	CG	SV	164027575	164028056	50	-	.	ID=761;Type=complex;Left=chr3:164027575-164028056;Right=chr3:164030352-164030619
chr3	CG	SV	164030352	164030619	50	-	.	ID=761;Type=complex;Left=chr3:164027575-164028056;Right=chr3:164030352-164030619
chr3	CG	SV	164247591	164252173	55	.	.	ID=3669;Type=deletion;Left=chr3:164247591-164247972+;Right=chr3:164251778-164252173+;Distance=4187;DiscordantMatePairAlignments=55;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Tandem TG;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67657160 (chr3:164247595-164251776);Frequency=0.88
chr3	CG	SV	164247591	164247972	55	+	.	ID=3669;Type=deletion;Left=chr3:164247591-164247972;Right=chr3:164251778-164252173
chr3	CG	SV	164251778	164252173	55	+	.	ID=3669;Type=deletion;Left=chr3:164247591-164247972;Right=chr3:164251778-164252173
chr3	CG	SV	169685465	169730430	23	.	.	ID=1736;Type=tandem-duplication;Left=chr3:169685465-169685856-;Right=chr3:169730097-169730430-;Distance=44574;DiscordantMatePairAlignments=23;LeftRepeat=MER104:DNA:Tc2;RightRepeat=THE1C:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	169685465	169685856	23	-	.	ID=1736;Type=tandem-duplication;Left=chr3:169685465-169685856;Right=chr3:169730097-169730430
chr3	CG	SV	169730097	169730430	23	-	.	ID=1736;Type=tandem-duplication;Left=chr3:169685465-169685856;Right=chr3:169730097-169730430
chr3	CG	SV	175552679	175562478	58	.	.	ID=1735;Type=tandem-duplication;Left=chr3:175552679-175553075-;Right=chr3:175562011-175562478-;Distance=9403;DiscordantMatePairAlignments=58;LeftRepeat=L1MC3:LINE:L1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	175552679	175553075	58	-	.	ID=1735;Type=tandem-duplication;Left=chr3:175552679-175553075;Right=chr3:175562011-175562478
chr3	CG	SV	175562011	175562478	58	-	.	ID=1735;Type=tandem-duplication;Left=chr3:175552679-175553075;Right=chr3:175562011-175562478
chr3	CG	SV	181137034	181137854	19	.	.	ID=3664;Type=deletion;Left=chr3:181137034-181137534+;Right=chr3:181137499-181137854+;Distance=465;DiscordantMatePairAlignments=19;LeftRepeat=;RightRepeat=;LeftGenes=NM_016559:-;RightGenes=NM_016559:-;XRef=rs66526785 (chr3:181137035-181137500);Frequency=0.94
chr3	CG	SV	181137034	181137534	19	+	.	ID=3664;Type=deletion;Left=chr3:181137034-181137534;Right=chr3:181137499-181137854
chr3	CG	SV	181137499	181137854	19	+	.	ID=3664;Type=deletion;Left=chr3:181137034-181137534;Right=chr3:181137499-181137854
chr3	CG	SV	185359392	185360384	14	.	.	ID=3663;Type=deletion;Left=chr3:185359392-185359635+;Right=chr3:185360115-185360384+;Distance=723;DiscordantMatePairAlignments=14;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_004423:+;RightGenes=NM_004423:+;XRef=;Frequency=0.76
chr3	CG	SV	185359392	185359635	14	+	.	ID=3663;Type=deletion;Left=chr3:185359392-185359635;Right=chr3:185360115-185360384
chr3	CG	SV	185360115	185360384	14	+	.	ID=3663;Type=deletion;Left=chr3:185359392-185359635;Right=chr3:185360115-185360384
chr3	CG	SV	188063727	188068456	61	.	.	ID=3661;Type=deletion;Left=chr3:188063727-188064235+;Right=chr3:188067996-188068456+;Distance=4269;DiscordantMatePairAlignments=61;LeftRepeat=Tandem TCCCTC;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66463946 (chr3:188063709-188067978);Frequency=1.00
chr3	CG	SV	188063727	188064235	61	+	.	ID=3661;Type=deletion;Left=chr3:188063727-188064235;Right=chr3:188067996-188068456
chr3	CG	SV	188067996	188068456	61	+	.	ID=3661;Type=deletion;Left=chr3:188063727-188064235;Right=chr3:188067996-188068456
chr3	CG	SV	193338792	193339624	30	.	.	ID=3657;Type=deletion;Left=chr3:193338792-193339303+;Right=chr3:193339130-193339624+;Distance=338;DiscordantMatePairAlignments=30;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10530679 (chr3:193338779-193339117);Frequency=1.00
chr3	CG	SV	193338792	193339303	30	+	.	ID=3657;Type=deletion;Left=chr3:193338792-193339303;Right=chr3:193339130-193339624
chr3	CG	SV	193339130	193339624	30	+	.	ID=3657;Type=deletion;Left=chr3:193338792-193339303;Right=chr3:193339130-193339624
chr3	CG	SV	194358026	194368619	47	.	.	ID=3654;Type=deletion;Left=chr3:194358026-194358542+;Right=chr3:194368102-194368619+;Distance=10076;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	194358026	194358542	47	+	.	ID=3654;Type=deletion;Left=chr3:194358026-194358542;Right=chr3:194368102-194368619
chr3	CG	SV	194368102	194368619	47	+	.	ID=3654;Type=deletion;Left=chr3:194358026-194358542;Right=chr3:194368102-194368619
chr3	CG	SV	195865460	195866145	16	.	.	ID=3653;Type=deletion;Left=chr3:195865460-195865986+;Right=chr3:195865824-195866145+;Distance=364;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 28;RightRepeat=Self chain;Tandem period 28;LeftGenes=NM_018385:-;RightGenes=NM_018385:-;XRef=rs10705443 (chr3:195865374-195865766);Frequency=0.94
chr3	CG	SV	195865460	195865986	16	+	.	ID=3653;Type=deletion;Left=chr3:195865460-195865986;Right=chr3:195865824-195866145
chr3	CG	SV	195865824	195866145	16	+	.	ID=3653;Type=deletion;Left=chr3:195865460-195865986;Right=chr3:195865824-195866145
chr3	CG	SV	196024581	196027724	125	.	.	ID=3652;Type=distal-duplication;Left=chr3:196024581-196025138+;Right=chr3:196027547-196027724+;Distance=2966;DiscordantMatePairAlignments=125;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72236752 (chr3:196024579-196027545);Frequency=0.76
chr3	CG	SV	196024581	196025138	125	+	.	ID=3652;Type=distal-duplication;Left=chr3:196024581-196025138;Right=chr3:196027547-196027724
chr3	CG	SV	196027547	196027724	125	+	.	ID=3652;Type=distal-duplication;Left=chr3:196024581-196025138;Right=chr3:196027547-196027724
chr3	CG	SV	196024078	196027718	171	.	.	ID=1734;Type=distal-duplication;Left=chr3:196024078-196024598-;Right=chr3:196027543-196027718-;Distance=3120;DiscordantMatePairAlignments=171;LeftRepeat=;RightRepeat=Tandem period 120;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr3	CG	SV	196024078	196024598	171	-	.	ID=1734;Type=distal-duplication;Left=chr3:196024078-196024598;Right=chr3:196027543-196027718
chr3	CG	SV	196027543	196027718	171	-	.	ID=1734;Type=distal-duplication;Left=chr3:196024078-196024598;Right=chr3:196027543-196027718
chr3	CG	SV	197138792	197140057	19	.	.	ID=3650;Type=deletion;Left=chr3:197138792-197139272+;Right=chr3:197139765-197140057+;Distance=973;DiscordantMatePairAlignments=19;LeftRepeat=LTR5_Hs:LTR:ERVK;Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr3	CG	SV	197138792	197139272	19	+	.	ID=3650;Type=deletion;Left=chr3:197138792-197139272;Right=chr3:197139765-197140057
chr3	CG	SV	197139765	197140057	19	+	.	ID=3650;Type=deletion;Left=chr3:197138792-197139272;Right=chr3:197139765-197140057
chr4	CG	SV	3581987	3582751	31	.	.	ID=3646;Type=deletion;Left=chr4:3581987-3582582+;Right=chr4:3582466-3582751+;Distance=479;DiscordantMatePairAlignments=31;LeftRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Self chain;Tandem CATC;Tandem period 19;Tandem period 27;Tandem period 35;Tandem period 53;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Self chain;Tandem CATC;Tandem period 19;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	3581987	3582582	31	+	.	ID=3646;Type=deletion;Left=chr4:3581987-3582582;Right=chr4:3582466-3582751
chr4	CG	SV	3582466	3582751	31	+	.	ID=3646;Type=deletion;Left=chr4:3581987-3582582;Right=chr4:3582466-3582751
chr4	CG	SV	3583173	3588582	61	.	.	ID=3645;Type=deletion;Left=chr4:3583173-3583731+;Right=chr4:3588418-3588582+;Distance=5245;DiscordantMatePairAlignments=61;LeftRepeat=Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	3583173	3583731	61	+	.	ID=3645;Type=deletion;Left=chr4:3583173-3583731;Right=chr4:3588418-3588582
chr4	CG	SV	3588418	3588582	61	+	.	ID=3645;Type=deletion;Left=chr4:3583173-3583731;Right=chr4:3588418-3588582
chr4	CG	SV	10001528	10011816	124	.	.	ID=3640;Type=deletion;Left=chr4:10001528-10001942+;Right=chr4:10011279-10011816+;Distance=9751;DiscordantMatePairAlignments=124;LeftRepeat=L1MA3:LINE:L1;RightRepeat=L1MEe:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr4	CG	SV	10001528	10001942	124	+	.	ID=3640;Type=deletion;Left=chr4:10001528-10001942;Right=chr4:10011279-10011816
chr4	CG	SV	10011279	10011816	124	+	.	ID=3640;Type=deletion;Left=chr4:10001528-10001942;Right=chr4:10011279-10011816
chr4	CG	SV	18688559	18695131	148	.	.	ID=3639;Type=deletion;Left=chr4:18688559-18689026+;Right=chr4:18694659-18695131+;Distance=6100;DiscordantMatePairAlignments=148;LeftRepeat=L1ME1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67516407 (chr4:18688548-18694648);Frequency=0.71
chr4	CG	SV	18688559	18689026	148	+	.	ID=3639;Type=deletion;Left=chr4:18688559-18689026;Right=chr4:18694659-18695131
chr4	CG	SV	18694659	18695131	148	+	.	ID=3639;Type=deletion;Left=chr4:18688559-18689026;Right=chr4:18694659-18695131
chr4	CG	SV	28030689	28031489	15	.	.	ID=3638;Type=deletion;Left=chr4:28030689-28031140+;Right=chr4:28031039-28031489+;Distance=350;DiscordantMatePairAlignments=15;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10705246 (chr4:28030688-28031038);Frequency=0.94
chr4	CG	SV	28030689	28031140	15	+	.	ID=3638;Type=deletion;Left=chr4:28030689-28031140;Right=chr4:28031039-28031489
chr4	CG	SV	28031039	28031489	15	+	.	ID=3638;Type=deletion;Left=chr4:28030689-28031140;Right=chr4:28031039-28031489
chr4	CG	SV	33523565	33524970	28	.	.	ID=3632;Type=deletion;Left=chr4:33523565-33523847+;Right=chr4:33524623-33524970+;Distance=1058;DiscordantMatePairAlignments=28;LeftRepeat=MER11C:LTR:ERVK;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66649474 (chr4:33523565-33524622);Frequency=1.00
chr4	CG	SV	33523565	33523847	28	+	.	ID=3632;Type=deletion;Left=chr4:33523565-33523847;Right=chr4:33524623-33524970
chr4	CG	SV	33524623	33524970	28	+	.	ID=3632;Type=deletion;Left=chr4:33523565-33523847;Right=chr4:33524623-33524970
chr4	CG	SV	43626253	43627062	15	.	.	ID=3628;Type=deletion;Left=chr4:43626253-43626670+;Right=chr4:43626594-43627062+;Distance=341;DiscordantMatePairAlignments=15;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs6148417 (chr4:43626253-43626594);Frequency=1.00
chr4	CG	SV	43626253	43626670	15	+	.	ID=3628;Type=deletion;Left=chr4:43626253-43626670;Right=chr4:43626594-43627062
chr4	CG	SV	43626594	43627062	15	+	.	ID=3628;Type=deletion;Left=chr4:43626253-43626670;Right=chr4:43626594-43627062
chr4	CG	SV	44202036	44202964	13	.	.	ID=3627;Type=deletion;Left=chr4:44202036-44202418+;Right=chr4:44202490-44202964+;Distance=454;DiscordantMatePairAlignments=13;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66878865 (chr4:44202032-44202486);Frequency=1.00
chr4	CG	SV	44202036	44202418	13	+	.	ID=3627;Type=deletion;Left=chr4:44202036-44202418;Right=chr4:44202490-44202964
chr4	CG	SV	44202490	44202964	13	+	.	ID=3627;Type=deletion;Left=chr4:44202036-44202418;Right=chr4:44202490-44202964
chr4	CG	SV	57782107	57782912	38	.	.	ID=3622;Type=deletion;Left=chr4:57782107-57782581+;Right=chr4:57782505-57782912+;Distance=398;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10525076 (chr4:57782093-57782491);Frequency=1.00
chr4	CG	SV	57782107	57782581	38	+	.	ID=3622;Type=deletion;Left=chr4:57782107-57782581;Right=chr4:57782505-57782912
chr4	CG	SV	57782505	57782912	38	+	.	ID=3622;Type=deletion;Left=chr4:57782107-57782581;Right=chr4:57782505-57782912
chr4	CG	SV	57842787	57843812	11	.	.	ID=3621;Type=deletion;Left=chr4:57842787-57843194+;Right=chr4:57843113-57843812+;Distance=326;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71180070 (chr4:57842787-57843113);Frequency=0.82
chr4	CG	SV	57842787	57843194	11	+	.	ID=3621;Type=deletion;Left=chr4:57842787-57843194;Right=chr4:57843113-57843812
chr4	CG	SV	57843113	57843812	11	+	.	ID=3621;Type=deletion;Left=chr4:57842787-57843194;Right=chr4:57843113-57843812
chr4	CG	SV	59627160	59633620	72	.	.	ID=3620;Type=deletion;Left=chr4:59627160-59627579+;Right=chr4:59633202-59633620+;Distance=6042;DiscordantMatePairAlignments=72;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72460317 (chr4:59627160-59633202);Frequency=0.94
chr4	CG	SV	59627160	59627579	72	+	.	ID=3620;Type=deletion;Left=chr4:59627160-59627579;Right=chr4:59633202-59633620
chr4	CG	SV	59633202	59633620	72	+	.	ID=3620;Type=deletion;Left=chr4:59627160-59627579;Right=chr4:59633202-59633620
chr4	CG	SV	61012701	61016198	17	.	.	ID=3619;Type=deletion;Left=chr4:61012701-61013062+;Right=chr4:61015781-61016198+;Distance=3080;DiscordantMatePairAlignments=17;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1PA4:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66908185 (chr4:61012701-61015780);Frequency=0.76
chr4	CG	SV	61012701	61013062	17	+	.	ID=3619;Type=deletion;Left=chr4:61012701-61013062;Right=chr4:61015781-61016198
chr4	CG	SV	61015781	61016198	17	+	.	ID=3619;Type=deletion;Left=chr4:61012701-61013062;Right=chr4:61015781-61016198
chr4	CG	SV	79488158	79494719	212	.	.	ID=3613;Type=deletion;Left=chr4:79488158-79488694+;Right=chr4:79494233-79494719+;Distance=6075;DiscordantMatePairAlignments=212;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001166133:+;NM_025074:+;RightGenes=NM_001166133:+;NM_025074:+;XRef=;Frequency=1.00
chr4	CG	SV	79488158	79488694	212	+	.	ID=3613;Type=deletion;Left=chr4:79488158-79488694;Right=chr4:79494233-79494719
chr4	CG	SV	79494233	79494719	212	+	.	ID=3613;Type=deletion;Left=chr4:79488158-79488694;Right=chr4:79494233-79494719
chr4	CG	SV	82210554	82211296	10	.	.	ID=3611;Type=deletion;Left=chr4:82210554-82211072+;Right=chr4:82210875-82211296+;Distance=321;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6148545 (chr4:82210539-82210860);Frequency=1.00
chr4	CG	SV	82210554	82211072	10	+	.	ID=3611;Type=deletion;Left=chr4:82210554-82211072;Right=chr4:82210875-82211296
chr4	CG	SV	82210875	82211296	10	+	.	ID=3611;Type=deletion;Left=chr4:82210554-82211072;Right=chr4:82210875-82211296
chr4	CG	SV	86879793	86880436	15	.	.	ID=3609;Type=deletion;Left=chr4:86879793-86880347+;Right=chr4:86880115-86880436+;Distance=322;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=NM_001025616:+;RightGenes=NM_001025616:+;XRef=rs10705059 (chr4:86879793-86880115);Frequency=1.00
chr4	CG	SV	86879793	86880347	15	+	.	ID=3609;Type=deletion;Left=chr4:86879793-86880347;Right=chr4:86880115-86880436
chr4	CG	SV	86880115	86880436	15	+	.	ID=3609;Type=deletion;Left=chr4:86879793-86880347;Right=chr4:86880115-86880436
chr4	CG	SV	88702911	88705800	78	.	.	ID=3608;Type=deletion;Left=chr4:88702911-88703413+;Right=chr4:88705340-88705800+;Distance=2429;DiscordantMatePairAlignments=78;LeftRepeat=;RightRepeat=L1ME3B:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66992231 (chr4:88702907-88705336);Frequency=0.65
chr4	CG	SV	88702911	88703413	78	+	.	ID=3608;Type=deletion;Left=chr4:88702911-88703413;Right=chr4:88705340-88705800
chr4	CG	SV	88705340	88705800	78	+	.	ID=3608;Type=deletion;Left=chr4:88702911-88703413;Right=chr4:88705340-88705800
chr4	CG	SV	94778477	94785006	68	.	.	ID=3600;Type=deletion;Left=chr4:94778477-94778867+;Right=chr4:94784528-94785006+;Distance=6051;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=;LeftGenes=NM_001510:+;RightGenes=NM_001510:+;XRef=rs67415856 (chr4:94778477-94784528);Frequency=0.41
chr4	CG	SV	94778477	94778867	68	+	.	ID=3600;Type=deletion;Left=chr4:94778477-94778867;Right=chr4:94784528-94785006
chr4	CG	SV	94784528	94785006	68	+	.	ID=3600;Type=deletion;Left=chr4:94778477-94778867;Right=chr4:94784528-94785006
chr4	CG	SV	100242071	100242884	17	.	.	ID=3597;Type=deletion;Left=chr4:100242071-100242509+;Right=chr4:100242405-100242884+;Distance=334;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	100242071	100242509	17	+	.	ID=3597;Type=deletion;Left=chr4:100242071-100242509;Right=chr4:100242405-100242884
chr4	CG	SV	100242405	100242884	17	+	.	ID=3597;Type=deletion;Left=chr4:100242071-100242509;Right=chr4:100242405-100242884
chr4	CG	SV	100289327	100290113	10	.	.	ID=3596;Type=deletion;Left=chr4:100289327-100289887+;Right=chr4:100289643-100290113+;Distance=316;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6148595 (chr4:100289311-100289627);Frequency=1.00
chr4	CG	SV	100289327	100289887	10	+	.	ID=3596;Type=deletion;Left=chr4:100289327-100289887;Right=chr4:100289643-100290113
chr4	CG	SV	100289643	100290113	10	+	.	ID=3596;Type=deletion;Left=chr4:100289327-100289887;Right=chr4:100289643-100290113
chr4	CG	SV	104004615	104005496	16	.	.	ID=3595;Type=deletion;Left=chr4:104004615-104005046+;Right=chr4:104004962-104005496+;Distance=347;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=;LeftGenes=NM_181890:-;NM_181893:-;RightGenes=NM_181890:-;NM_181893:-;XRef=rs6148603 (chr4:104004614-104004961);Frequency=0.59
chr4	CG	SV	104004615	104005046	16	+	.	ID=3595;Type=deletion;Left=chr4:104004615-104005046;Right=chr4:104004962-104005496
chr4	CG	SV	104004962	104005496	16	+	.	ID=3595;Type=deletion;Left=chr4:104004615-104005046;Right=chr4:104004962-104005496
chr4	CG	SV	105113495	105114542	65	.	.	ID=3594;Type=deletion;Left=chr4:105113495-105113977+;Right=chr4:105114129-105114542+;Distance=634;DiscordantMatePairAlignments=65;LeftRepeat=HERV4_I:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71662133 (chr4:105113495-105114126);Frequency=0.94
chr4	CG	SV	105113495	105113977	65	+	.	ID=3594;Type=deletion;Left=chr4:105113495-105113977;Right=chr4:105114129-105114542
chr4	CG	SV	105114129	105114542	65	+	.	ID=3594;Type=deletion;Left=chr4:105113495-105113977;Right=chr4:105114129-105114542
chr4	CG	SV	108347264	108351633	97	.	.	ID=3593;Type=deletion;Left=chr4:108347264-108347753+;Right=chr4:108351170-108351633+;Distance=3906;DiscordantMatePairAlignments=97;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66829191 (chr4:108347277-108351183);Frequency=1.00
chr4	CG	SV	108347264	108347753	97	+	.	ID=3593;Type=deletion;Left=chr4:108347264-108347753;Right=chr4:108351170-108351633
chr4	CG	SV	108351170	108351633	97	+	.	ID=3593;Type=deletion;Left=chr4:108347264-108347753;Right=chr4:108351170-108351633
chr4	CG	SV	114205394	114206189	23	.	.	ID=3590;Type=deletion;Left=chr4:114205394-114205900+;Right=chr4:114205856-114206189+;Distance=462;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;Tandem period 33;RightRepeat=Self chain;Tandem period 33;LeftGenes=NM_001127493:+;NM_001148:+;NM_020977:+;RightGenes=NM_001127493:+;NM_001148:+;NM_020977:+;XRef=rs72075860 (chr4:114205429-114205858);Frequency=0.94
chr4	CG	SV	114205394	114205900	23	+	.	ID=3590;Type=deletion;Left=chr4:114205394-114205900;Right=chr4:114205856-114206189
chr4	CG	SV	114205856	114206189	23	+	.	ID=3590;Type=deletion;Left=chr4:114205394-114205900;Right=chr4:114205856-114206189
chr4	CG	SV	120246692	120247559	24	.	.	ID=3588;Type=deletion;Left=chr4:120246692-120247122+;Right=chr4:120247028-120247559+;Distance=336;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;RightRepeat=MLT1K:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr4	CG	SV	120246692	120247122	24	+	.	ID=3588;Type=deletion;Left=chr4:120246692-120247122;Right=chr4:120247028-120247559
chr4	CG	SV	120247028	120247559	24	+	.	ID=3588;Type=deletion;Left=chr4:120246692-120247122;Right=chr4:120247028-120247559
chr4	CG	SV	125163017	125165139	36	.	.	ID=3586;Type=deletion;Left=chr4:125163017-125163408+;Right=chr4:125164651-125165139+;Distance=1634;DiscordantMatePairAlignments=36;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68108143 (chr4:125163017-125164651);Frequency=0.53
chr4	CG	SV	125163017	125163408	36	+	.	ID=3586;Type=deletion;Left=chr4:125163017-125163408;Right=chr4:125164651-125165139
chr4	CG	SV	125164651	125165139	36	+	.	ID=3586;Type=deletion;Left=chr4:125163017-125163408;Right=chr4:125164651-125165139
chr4	CG	SV	130435952	130439494	284	.	.	ID=3585;Type=deletion;Left=chr4:130435952-130436438+;Right=chr4:130438935-130439494+;Distance=2983;DiscordantMatePairAlignments=284;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr4	CG	SV	130435952	130436438	284	+	.	ID=3585;Type=deletion;Left=chr4:130435952-130436438;Right=chr4:130438935-130439494
chr4	CG	SV	130438935	130439494	284	+	.	ID=3585;Type=deletion;Left=chr4:130435952-130436438;Right=chr4:130438935-130439494
chr4	CG	SV	135652452	135655562	47	.	.	ID=3584;Type=deletion;Left=chr4:135652452-135652752+;Right=chr4:135655151-135655562+;Distance=2699;DiscordantMatePairAlignments=47;LeftRepeat=Arthur1:DNA:Tip100;RightRepeat=L1MA9:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72144499 (chr4:135652457-135655151);Frequency=0.71
chr4	CG	SV	135652452	135652752	47	+	.	ID=3584;Type=deletion;Left=chr4:135652452-135652752;Right=chr4:135655151-135655562
chr4	CG	SV	135655151	135655562	47	+	.	ID=3584;Type=deletion;Left=chr4:135652452-135652752;Right=chr4:135655151-135655562
chr4	CG	SV	139185661	139187053	112	.	.	ID=3583;Type=deletion;Left=chr4:139185661-139186153+;Right=chr4:139186668-139187053+;Distance=1007;DiscordantMatePairAlignments=112;LeftRepeat=MER61D:LTR:ERV1;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66727003 (chr4:139185661-139186667);Frequency=0.59
chr4	CG	SV	139185661	139186153	112	+	.	ID=3583;Type=deletion;Left=chr4:139185661-139186153;Right=chr4:139186668-139187053
chr4	CG	SV	139186668	139187053	112	+	.	ID=3583;Type=deletion;Left=chr4:139185661-139186153;Right=chr4:139186668-139187053
chr4	CG	SV	146658263	146660423	64	.	.	ID=3582;Type=deletion;Left=chr4:146658263-146658706+;Right=chr4:146659907-146660423+;Distance=1644;DiscordantMatePairAlignments=64;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001003688:+;NM_005900:+;RightGenes=NM_001003688:+;NM_005900:+;XRef=rs67125785 (chr4:146658263-146659907);Frequency=0.59
chr4	CG	SV	146658263	146658706	64	+	.	ID=3582;Type=deletion;Left=chr4:146658263-146658706;Right=chr4:146659907-146660423
chr4	CG	SV	146659907	146660423	64	+	.	ID=3582;Type=deletion;Left=chr4:146658263-146658706;Right=chr4:146659907-146660423
chr4	CG	SV	152560157	152561534	208	.	.	ID=3581;Type=deletion;Left=chr4:152560157-152560817+;Right=chr4:152561004-152561534+;Distance=847;DiscordantMatePairAlignments=208;LeftRepeat=;RightRepeat=L1HS:LINE:L1;LeftGenes=NM_001109977:+;RightGenes=NM_001109977:+;XRef=rs72214776 (chr4:152560155-152561002);Frequency=0.94
chr4	CG	SV	152560157	152560817	208	+	.	ID=3581;Type=deletion;Left=chr4:152560157-152560817;Right=chr4:152561004-152561534
chr4	CG	SV	152561004	152561534	208	+	.	ID=3581;Type=deletion;Left=chr4:152560157-152560817;Right=chr4:152561004-152561534
chr4	CG	SV	153315133	153316232	25	.	.	ID=3580;Type=deletion;Left=chr4:153315133-153315592+;Right=chr4:153315732-153316232+;Distance=599;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr4	CG	SV	153315133	153315592	25	+	.	ID=3580;Type=deletion;Left=chr4:153315133-153315592;Right=chr4:153315732-153316232
chr4	CG	SV	153315732	153316232	25	+	.	ID=3580;Type=deletion;Left=chr4:153315133-153315592;Right=chr4:153315732-153316232
chr4	CG	SV	166222112	166224816	40	.	.	ID=3575;Type=deletion;Left=chr4:166222112-166222492+;Right=chr4:166224550-166224816+;Distance=2438;DiscordantMatePairAlignments=40;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_001100389:-;RightGenes=NM_001100389:-;XRef=rs71937308 (chr4:166222054-166224492);Frequency=1.00
chr4	CG	SV	166222112	166222492	40	+	.	ID=3575;Type=deletion;Left=chr4:166222112-166222492;Right=chr4:166224550-166224816
chr4	CG	SV	166224550	166224816	40	+	.	ID=3575;Type=deletion;Left=chr4:166222112-166222492;Right=chr4:166224550-166224816
chr4	CG	SV	167223766	167224903	42	.	.	ID=3574;Type=deletion;Left=chr4:167223766-167223984+;Right=chr4:167224369-167224903+;Distance=603;DiscordantMatePairAlignments=42;LeftRepeat=Self chain;RightRepeat=L1MA8:LINE:L1;Self chain;LeftGenes=NM_012464:+;RightGenes=NM_012464:+;XRef=rs72050237 (chr4:167223766-167224362);Frequency=0.76
chr4	CG	SV	167223766	167223984	42	+	.	ID=3574;Type=deletion;Left=chr4:167223766-167223984;Right=chr4:167224369-167224903
chr4	CG	SV	167224369	167224903	42	+	.	ID=3574;Type=deletion;Left=chr4:167223766-167223984;Right=chr4:167224369-167224903
chr4	CG	SV	167913613	167920090	50	.	.	ID=3572;Type=deletion;Left=chr4:167913613-167914030+;Right=chr4:167919648-167920090+;Distance=6035;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=;LeftGenes=NM_001040159:-;NM_016950:-;RightGenes=NM_001040159:-;NM_016950:-;XRef=rs71929678 (chr4:167913623-167919658);Frequency=0.88
chr4	CG	SV	167913613	167914030	50	+	.	ID=3572;Type=deletion;Left=chr4:167913613-167914030;Right=chr4:167919648-167920090
chr4	CG	SV	167919648	167920090	50	+	.	ID=3572;Type=deletion;Left=chr4:167913613-167914030;Right=chr4:167919648-167920090
chr4	CG	SV	170515039	170515940	20	.	.	ID=3571;Type=deletion;Left=chr4:170515039-170515416+;Right=chr4:170515460-170515940+;Distance=421;DiscordantMatePairAlignments=20;LeftRepeat=AluJo:SINE:Alu;RightRepeat=MER58A:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs67724482 (chr4:170515039-170515460);Frequency=0.82
chr4	CG	SV	170515039	170515416	20	+	.	ID=3571;Type=deletion;Left=chr4:170515039-170515416;Right=chr4:170515460-170515940
chr4	CG	SV	170515460	170515940	20	+	.	ID=3571;Type=deletion;Left=chr4:170515039-170515416;Right=chr4:170515460-170515940
chr4	CG	SV	173661607	173670481	38	.	.	ID=3570;Type=deletion;Left=chr4:173661607-173661931+;Right=chr4:173670095-173670481+;Distance=8488;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=L1PB1:LINE:L1;LeftGenes=NM_001034845:+;RightGenes=NM_001034845:+;XRef=rs67651552 (chr4:173661607-173670094);Frequency=0.94
chr4	CG	SV	173661607	173661931	38	+	.	ID=3570;Type=deletion;Left=chr4:173661607-173661931;Right=chr4:173670095-173670481
chr4	CG	SV	173670095	173670481	38	+	.	ID=3570;Type=deletion;Left=chr4:173661607-173661931;Right=chr4:173670095-173670481
chr4	CG	SV	175741511	175742283	27	.	.	ID=3569;Type=deletion;Left=chr4:175741511-175742001+;Right=chr4:175741934-175742283+;Distance=423;DiscordantMatePairAlignments=27;LeftRepeat=AluSc:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72035570 (chr4:175741516-175741934);Frequency=0.10
chr4	CG	SV	175741511	175742001	27	+	.	ID=3569;Type=deletion;Left=chr4:175741511-175742001;Right=chr4:175741934-175742283
chr4	CG	SV	175741934	175742283	27	+	.	ID=3569;Type=deletion;Left=chr4:175741511-175742001;Right=chr4:175741934-175742283
chr4	CG	SV	182113796	182115802	187	.	.	ID=3563;Type=deletion;Left=chr4:182113796-182114358+;Right=chr4:182115298-182115802+;Distance=1502;DiscordantMatePairAlignments=187;LeftRepeat=L1HS:LINE:L1;Tandem T;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66719029 (chr4:182113780-182115282);Frequency=1.00
chr4	CG	SV	182113796	182114358	187	+	.	ID=3563;Type=deletion;Left=chr4:182113796-182114358;Right=chr4:182115298-182115802
chr4	CG	SV	182115298	182115802	187	+	.	ID=3563;Type=deletion;Left=chr4:182113796-182114358;Right=chr4:182115298-182115802
chr4	CG	SV	184494941	184495807	13	.	.	ID=3562;Type=deletion;Left=chr4:184494941-184495170+;Right=chr4:184495571-184495807+;Distance=630;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 42;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10704947 (chr4:184494864-184495242);Frequency=0.82
chr4	CG	SV	184494941	184495170	13	+	.	ID=3562;Type=deletion;Left=chr4:184494941-184495170;Right=chr4:184495571-184495807
chr4	CG	SV	184495571	184495807	13	+	.	ID=3562;Type=deletion;Left=chr4:184494941-184495170;Right=chr4:184495571-184495807
chr4	CG	SV	184892827	184896473	33	.	.	ID=3561;Type=deletion;Left=chr4:184892827-184893104+;Right=chr4:184895979-184896473+;Distance=3152;DiscordantMatePairAlignments=33;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71162502 (chr4:184892827-184895979);Frequency=0.35
chr4	CG	SV	184892827	184893104	33	+	.	ID=3561;Type=deletion;Left=chr4:184892827-184893104;Right=chr4:184895979-184896473
chr4	CG	SV	184895979	184896473	33	+	.	ID=3561;Type=deletion;Left=chr4:184892827-184893104;Right=chr4:184895979-184896473
chr4	CG	SV	184911425	184913016	32	.	.	ID=3560;Type=deletion;Left=chr4:184911425-184911900+;Right=chr4:184912885-184913016+;Distance=1460;DiscordantMatePairAlignments=32;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr4	CG	SV	184911425	184911900	32	+	.	ID=3560;Type=deletion;Left=chr4:184911425-184911900;Right=chr4:184912885-184913016
chr4	CG	SV	184912885	184913016	32	+	.	ID=3560;Type=deletion;Left=chr4:184911425-184911900;Right=chr4:184912885-184913016
chr4	CG	SV	185741828	185964707	54	.	.	ID=756;Type=probable-inversion;Left=chr4:185741828-185742332-;Right=chr4:185964343-185964707+;Distance=222011;DiscordantMatePairAlignments=54;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=NM_001995:-;XRef=;Frequency=0.00
chr4	CG	SV	185741828	185742332	54	-	.	ID=756;Type=probable-inversion;Left=chr4:185741828-185742332;Right=chr4:185964343-185964707
chr4	CG	SV	185964343	185964707	54	-	.	ID=756;Type=probable-inversion;Left=chr4:185741828-185742332;Right=chr4:185964343-185964707
chr4	CG	SV	186576504	186577973	30	.	.	ID=3557;Type=deletion;Left=chr4:186576504-186576783+;Right=chr4:186577558-186577973+;Distance=1054;DiscordantMatePairAlignments=30;LeftRepeat=MIR3:SINE:MIR;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_018359:-;NR_028085:-;RightGenes=NM_018359:-;NR_028085:-;XRef=;Frequency=0.00
chr4	CG	SV	186576504	186576783	30	+	.	ID=3557;Type=deletion;Left=chr4:186576504-186576783;Right=chr4:186577558-186577973
chr4	CG	SV	186577558	186577973	30	+	.	ID=3557;Type=deletion;Left=chr4:186576504-186576783;Right=chr4:186577558-186577973
chr4	CG	SV	186585901	186586447	13	.	.	ID=3556;Type=deletion;Left=chr4:186585901-186586428+;Right=chr4:186586228-186586447+;Distance=327;DiscordantMatePairAlignments=13;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr4	CG	SV	186585901	186586428	13	+	.	ID=3556;Type=deletion;Left=chr4:186585901-186586428;Right=chr4:186586228-186586447
chr4	CG	SV	186586228	186586447	13	+	.	ID=3556;Type=deletion;Left=chr4:186585901-186586428;Right=chr4:186586228-186586447
chr4	CG	SV	186678631	186681614	179	.	.	ID=3555;Type=deletion;Left=chr4:186678631-186679169+;Right=chr4:186681069-186681614+;Distance=2438;DiscordantMatePairAlignments=179;LeftRepeat=;RightRepeat=;LeftGenes=NM_001114107:-;NM_014476:-;RightGenes=NM_001114107:-;NM_014476:-;XRef=;Frequency=0.94
chr4	CG	SV	186678631	186679169	179	+	.	ID=3555;Type=deletion;Left=chr4:186678631-186679169;Right=chr4:186681069-186681614
chr4	CG	SV	186681069	186681614	179	+	.	ID=3555;Type=deletion;Left=chr4:186678631-186679169;Right=chr4:186681069-186681614
chr4	CG	SV	187330481	187335401	15	.	.	ID=3554;Type=deletion;Left=chr4:187330481-187330713+;Right=chr4:187335231-187335401+;Distance=4750;DiscordantMatePairAlignments=15;LeftRepeat=;RightRepeat=;LeftGenes=NM_001006655:+;NM_015398:+;RightGenes=;XRef=;Frequency=0.88
chr4	CG	SV	187330481	187330713	15	+	.	ID=3554;Type=deletion;Left=chr4:187330481-187330713;Right=chr4:187335231-187335401
chr4	CG	SV	187335231	187335401	15	+	.	ID=3554;Type=deletion;Left=chr4:187330481-187330713;Right=chr4:187335231-187335401
chr4	CG	SV	190206689	190207490	12	.	.	ID=3552;Type=deletion;Left=chr4:190206689-190207234+;Right=chr4:190207043-190207490+;Distance=354;DiscordantMatePairAlignments=12;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10704951 (chr4:190206670-190207024);Frequency=1.00
chr4	CG	SV	190206689	190207234	12	+	.	ID=3552;Type=deletion;Left=chr4:190206689-190207234;Right=chr4:190207043-190207490
chr4	CG	SV	190207043	190207490	12	+	.	ID=3552;Type=deletion;Left=chr4:190206689-190207234;Right=chr4:190207043-190207490
chr4	CG	SV	190295008	190301720	38	.	.	ID=3551;Type=deletion;Left=chr4:190295008-190295465+;Right=chr4:190301282-190301720+;Distance=6274;DiscordantMatePairAlignments=38;LeftRepeat=L1P1:LINE:L1;RightRepeat=THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67851464 (chr4:190294992-190301266);Frequency=0.94
chr4	CG	SV	190295008	190295465	38	+	.	ID=3551;Type=deletion;Left=chr4:190295008-190295465;Right=chr4:190301282-190301720
chr4	CG	SV	190301282	190301720	38	+	.	ID=3551;Type=deletion;Left=chr4:190295008-190295465;Right=chr4:190301282-190301720
chr4	CG	SV	190342510	190343690	94	.	.	ID=3550;Type=deletion;Left=chr4:190342510-190342931+;Right=chr4:190343316-190343690+;Distance=806;DiscordantMatePairAlignments=94;LeftRepeat=Self chain;Tandem period 161;Tandem period 54;RightRepeat=Self chain;Tandem period 161;Tandem period 54;LeftGenes=;RightGenes=;XRef=rs66954860 (chr4:190342578-190343277);Frequency=1.00
chr4	CG	SV	190342510	190342931	94	+	.	ID=3550;Type=deletion;Left=chr4:190342510-190342931;Right=chr4:190343316-190343690
chr4	CG	SV	190343316	190343690	94	+	.	ID=3550;Type=deletion;Left=chr4:190342510-190342931;Right=chr4:190343316-190343690
chr4	CG	SV	190772342	190772491	17	.	.	ID=1711;Type=complex;Left=chr4:190772342-190772423-;Right=chr4:190772403-190772491-;Distance=68;DiscordantMatePairAlignments=17;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr4	CG	SV	190772342	190772423	17	-	.	ID=1711;Type=complex;Left=chr4:190772342-190772423;Right=chr4:190772403-190772491
chr4	CG	SV	190772403	190772491	17	-	.	ID=1711;Type=complex;Left=chr4:190772342-190772423;Right=chr4:190772403-190772491
chr4	CG	SV	190772499	190775518	16	.	.	ID=3548;Type=complex;Left=chr4:190772499-190772712+;Right=chr4:190775357-190775518+;Distance=2858;DiscordantMatePairAlignments=16;LeftRepeat=SegDup;Self chain;RightRepeat=LTR12C:LTR:ERV1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190772499	190772712	16	+	.	ID=3548;Type=complex;Left=chr4:190772499-190772712;Right=chr4:190775357-190775518
chr4	CG	SV	190775357	190775518	16	+	.	ID=3548;Type=complex;Left=chr4:190772499-190772712;Right=chr4:190775357-190775518
chr4	CG	SV	190822807	190850110	314	.	.	ID=4472;Type=probable-inversion;Left=chr4:190822807-190823363+;Right=chr4:190849597-190850110-;Distance=27303;DiscordantMatePairAlignments=314;LeftRepeat=Self chain;RightRepeat=LTR12C:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190822807	190823363	314	+	.	ID=4472;Type=probable-inversion;Left=chr4:190822807-190823363;Right=chr4:190849597-190850110
chr4	CG	SV	190849597	190850110	314	+	.	ID=4472;Type=probable-inversion;Left=chr4:190822807-190823363;Right=chr4:190849597-190850110
chr4	CG	SV	190844116	190847718	12	.	.	ID=3546;Type=deletion;Left=chr4:190844116-190844460+;Right=chr4:190847321-190847718+;Distance=3205;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;Tandem period 110;Tandem period 57;RightRepeat=MER2:DNA:MER2_type;Self chain;LeftGenes=;RightGenes=;XRef=rs71954462 (chr4:190843962-190847275);Frequency=1.00
chr4	CG	SV	190844116	190844460	12	+	.	ID=3546;Type=deletion;Left=chr4:190844116-190844460;Right=chr4:190847321-190847718
chr4	CG	SV	190847321	190847718	12	+	.	ID=3546;Type=deletion;Left=chr4:190844116-190844460;Right=chr4:190847321-190847718
chr4	CG	SV	190899926	190901199	63	.	.	ID=3543;Type=deletion;Left=chr4:190899926-190900367+;Right=chr4:190900721-190901199+;Distance=795;DiscordantMatePairAlignments=63;LeftRepeat=L1PBa:LINE:L1;Self chain;RightRepeat=L1PBa:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190899926	190900367	63	+	.	ID=3543;Type=deletion;Left=chr4:190899926-190900367;Right=chr4:190900721-190901199
chr4	CG	SV	190900721	190901199	63	+	.	ID=3543;Type=deletion;Left=chr4:190899926-190900367;Right=chr4:190900721-190901199
chr4	CG	SV	191035650	191038073	16	.	.	ID=3542;Type=deletion;Left=chr4:191035650-191035834+;Right=chr4:191037595-191038073+;Distance=1945;DiscordantMatePairAlignments=16;LeftRepeat=L1PA4:LINE:L1;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	191035650	191035834	16	+	.	ID=3542;Type=deletion;Left=chr4:191035650-191035834;Right=chr4:191037595-191038073
chr4	CG	SV	191037595	191038073	16	+	.	ID=3542;Type=deletion;Left=chr4:191035650-191035834;Right=chr4:191037595-191038073
chr4	CG	SV	191179202	191179805	13	-	.	ID=1482;Type=interchromosomal;Left=chr4:191179202-191179805-;Right=chr18:102252-102542-;Distance=;DiscordantMatePairAlignments=13;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	102252	102542	13	-	.	ID=1482;Type=interchromosomal;Left=chr4:191179202-191179805-;Right=chr18:102252-102542-;Distance=;DiscordantMatePairAlignments=13;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	540106	541117	60	.	.	ID=3538;Type=deletion;Left=chr5:540106-540749+;Right=chr5:540680-541117+;Distance=574;DiscordantMatePairAlignments=60;LeftRepeat=(CACAC)n:Simple_repeat:Simple_repeat;(CACCG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 15;Tandem period 38;Tandem period 68;RightRepeat=(CACCG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 15;Tandem period 68;LeftGenes=NM_004174:-;RightGenes=NM_004174:-;XRef=rs67969321 (chr5:540079-540691);Frequency=0.88
chr5	CG	SV	540106	540749	60	+	.	ID=3538;Type=deletion;Left=chr5:540106-540749;Right=chr5:540680-541117
chr5	CG	SV	540680	541117	60	+	.	ID=3538;Type=deletion;Left=chr5:540106-540749;Right=chr5:540680-541117
chr5	CG	SV	721126	721830	12	.	.	ID=3537;Type=deletion;Left=chr5:721126-721633+;Right=chr5:721608-721830+;Distance=482;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem period 289;Tandem period 48;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=NM_007030:-;RightGenes=NM_007030:-;XRef=rs70955282 (chr5:720962-721299);Frequency=0.82
chr5	CG	SV	721126	721633	12	+	.	ID=3537;Type=deletion;Left=chr5:721126-721633;Right=chr5:721608-721830
chr5	CG	SV	721608	721830	12	+	.	ID=3537;Type=deletion;Left=chr5:721126-721633;Right=chr5:721608-721830
chr5	CG	SV	1291456	1292174	12	.	.	ID=3534;Type=deletion;Left=chr5:1291456-1291979+;Right=chr5:1291791-1292174+;Distance=335;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem period 112;Tandem period 149;Tandem period 37;RightRepeat=Self chain;LeftGenes=NM_182632:+;RightGenes=NM_182632:+;XRef=rs72365262 (chr5:1291456-1291791);Frequency=0.53
chr5	CG	SV	1291456	1291979	12	+	.	ID=3534;Type=deletion;Left=chr5:1291456-1291979;Right=chr5:1291791-1292174
chr5	CG	SV	1291791	1292174	12	+	.	ID=3534;Type=deletion;Left=chr5:1291456-1291979;Right=chr5:1291791-1292174
chr5	CG	SV	1716858	1717712	27	.	.	ID=3533;Type=deletion;Left=chr5:1716858-1717295+;Right=chr5:1717352-1717712+;Distance=494;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66494513 (chr5:1716815-1717347);Frequency=0.82
chr5	CG	SV	1716858	1717295	27	+	.	ID=3533;Type=deletion;Left=chr5:1716858-1717295;Right=chr5:1717352-1717712
chr5	CG	SV	1717352	1717712	27	+	.	ID=3533;Type=deletion;Left=chr5:1716858-1717295;Right=chr5:1717352-1717712
chr5	CG	SV	1977591	1978705	60	.	.	ID=3532;Type=deletion;Left=chr5:1977591-1978041+;Right=chr5:1978203-1978705+;Distance=612;DiscordantMatePairAlignments=60;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67696355 (chr5:1977591-1978203);Frequency=0.94
chr5	CG	SV	1977591	1978041	60	+	.	ID=3532;Type=deletion;Left=chr5:1977591-1978041;Right=chr5:1978203-1978705
chr5	CG	SV	1978203	1978705	60	+	.	ID=3532;Type=deletion;Left=chr5:1977591-1978041;Right=chr5:1978203-1978705
chr5	CG	SV	2021410	2025030	31	.	.	ID=3531;Type=deletion;Left=chr5:2021410-2022009+;Right=chr5:2024598-2025030+;Distance=3188;DiscordantMatePairAlignments=31;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71809671 (chr5:2021413-2024601);Frequency=1.00
chr5	CG	SV	2021410	2022009	31	+	.	ID=3531;Type=deletion;Left=chr5:2021410-2022009;Right=chr5:2024598-2025030
chr5	CG	SV	2024598	2025030	31	+	.	ID=3531;Type=deletion;Left=chr5:2021410-2022009;Right=chr5:2024598-2025030
chr5	CG	SV	2915761	2916610	11	.	.	ID=3530;Type=deletion;Left=chr5:2915761-2916175+;Right=chr5:2916386-2916610+;Distance=625;DiscordantMatePairAlignments=11;LeftRepeat=(CCCCAG)n:Simple_repeat:Simple_repeat;Tandem AGCCAC;RightRepeat=(CCCCAG)n:Simple_repeat:Simple_repeat;Tandem AGCCAC;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr5	CG	SV	2915761	2916175	11	+	.	ID=3530;Type=deletion;Left=chr5:2915761-2916175;Right=chr5:2916386-2916610
chr5	CG	SV	2916386	2916610	11	+	.	ID=3530;Type=deletion;Left=chr5:2915761-2916175;Right=chr5:2916386-2916610
chr5	CG	SV	10692169	10693644	73	.	.	ID=3525;Type=deletion;Left=chr5:10692169-10692647+;Right=chr5:10693285-10693644+;Distance=1116;DiscordantMatePairAlignments=73;LeftRepeat=(CGCGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 31;RightRepeat=Self chain;LeftGenes=NM_001164440:+;RightGenes=NM_001164440:+;XRef=;Frequency=0.59
chr5	CG	SV	10692169	10692647	73	+	.	ID=3525;Type=deletion;Left=chr5:10692169-10692647;Right=chr5:10693285-10693644
chr5	CG	SV	10693285	10693644	73	+	.	ID=3525;Type=deletion;Left=chr5:10692169-10692647;Right=chr5:10693285-10693644
chr5	CG	SV	12864021	12873967	43	.	.	ID=3524;Type=deletion;Left=chr5:12864021-12864394+;Right=chr5:12873528-12873967+;Distance=9507;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66987566 (chr5:12864019-12873525);Frequency=0.88
chr5	CG	SV	12864021	12864394	43	+	.	ID=3524;Type=deletion;Left=chr5:12864021-12864394;Right=chr5:12873528-12873967
chr5	CG	SV	12873528	12873967	43	+	.	ID=3524;Type=deletion;Left=chr5:12864021-12864394;Right=chr5:12873528-12873967
chr5	CG	SV	13469603	13476363	152	.	.	ID=3523;Type=deletion;Left=chr5:13469603-13470027+;Right=chr5:13475865-13476363+;Distance=6262;DiscordantMatePairAlignments=152;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr5	CG	SV	13469603	13470027	152	+	.	ID=3523;Type=deletion;Left=chr5:13469603-13470027;Right=chr5:13475865-13476363
chr5	CG	SV	13475865	13476363	152	+	.	ID=3523;Type=deletion;Left=chr5:13469603-13470027;Right=chr5:13475865-13476363
chr5	CG	SV	16184703	16230925	64	.	.	ID=1477;Type=tandem-duplication;Left=chr5:16184703-16185352-;Right=chr5:16230497-16230925-;Distance=45573;DiscordantMatePairAlignments=64;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_001102562:-;RightGenes=NM_001102562:-;XRef=;Frequency=0.00
chr5	CG	SV	16184703	16185352	64	-	.	ID=1477;Type=tandem-duplication;Left=chr5:16184703-16185352;Right=chr5:16230497-16230925
chr5	CG	SV	16230497	16230925	64	-	.	ID=1477;Type=tandem-duplication;Left=chr5:16184703-16185352;Right=chr5:16230497-16230925
chr5	CG	SV	24463678	24464762	85	.	.	ID=3331;Type=deletion;Left=chr5:24463678-24464103+;Right=chr5:24464258-24464762+;Distance=580;DiscordantMatePairAlignments=85;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=ERVL-B4:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	24463678	24464103	85	+	.	ID=3331;Type=deletion;Left=chr5:24463678-24464103;Right=chr5:24464258-24464762
chr5	CG	SV	24464258	24464762	85	+	.	ID=3331;Type=deletion;Left=chr5:24463678-24464103;Right=chr5:24464258-24464762
chr5	CG	SV	29105074	29105382	12	.	.	ID=4470;Type=probable-inversion;Left=chr5:29105074-29105429+;Right=chr5:29105099-29105382-;Distance=308;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=THE1-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr5	CG	SV	29105074	29105429	12	+	.	ID=4470;Type=probable-inversion;Left=chr5:29105074-29105429;Right=chr5:29105099-29105382
chr5	CG	SV	29105099	29105382	12	+	.	ID=4470;Type=probable-inversion;Left=chr5:29105074-29105429;Right=chr5:29105099-29105382
chr5	CG	SV	53158235	53161708	11	.	.	ID=394;Type=distal-duplication;Left=chr5:53158235-53158370-;Right=chr5:53161268-53161708+;Distance=2898;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr5	CG	SV	53158235	53158370	11	-	.	ID=394;Type=distal-duplication;Left=chr5:53158235-53158370;Right=chr5:53161268-53161708
chr5	CG	SV	53161268	53161708	11	-	.	ID=394;Type=distal-duplication;Left=chr5:53158235-53158370;Right=chr5:53161268-53161708
chr5	CG	SV	53158520	53161242	11	.	.	ID=4468;Type=distal-duplication;Left=chr5:53158520-53158659+;Right=chr5:53160852-53161242-;Distance=2722;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr5	CG	SV	53158520	53158659	11	+	.	ID=4468;Type=distal-duplication;Left=chr5:53158520-53158659;Right=chr5:53160852-53161242
chr5	CG	SV	53160852	53161242	11	+	.	ID=4468;Type=distal-duplication;Left=chr5:53158520-53158659;Right=chr5:53160852-53161242
chr5	CG	SV	53212698	53213476	10	.	.	ID=3324;Type=deletion;Left=chr5:53212698-53213240+;Right=chr5:53213003-53213476+;Distance=305;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs33919885 (chr5:53212685-53212990);Frequency=1.00
chr5	CG	SV	53212698	53213240	10	+	.	ID=3324;Type=deletion;Left=chr5:53212698-53213240;Right=chr5:53213003-53213476
chr5	CG	SV	53213003	53213476	10	+	.	ID=3324;Type=deletion;Left=chr5:53212698-53213240;Right=chr5:53213003-53213476
chr5	CG	SV	57359235	57369973	30	.	.	ID=3322;Type=deletion;Left=chr5:57359235-57359694+;Right=chr5:57369537-57369973+;Distance=10302;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr5	CG	SV	57359235	57359694	30	+	.	ID=3322;Type=deletion;Left=chr5:57359235-57359694;Right=chr5:57369537-57369973
chr5	CG	SV	57369537	57369973	30	+	.	ID=3322;Type=deletion;Left=chr5:57359235-57359694;Right=chr5:57369537-57369973
chr5	CG	SV	57715758	57722438	60	.	.	ID=3321;Type=deletion;Left=chr5:57715758-57716227+;Right=chr5:57721867-57722438+;Distance=6109;DiscordantMatePairAlignments=60;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67036290 (chr5:57715758-57721867);Frequency=1.00
chr5	CG	SV	57715758	57716227	60	+	.	ID=3321;Type=deletion;Left=chr5:57715758-57716227;Right=chr5:57721867-57722438
chr5	CG	SV	57721867	57722438	60	+	.	ID=3321;Type=deletion;Left=chr5:57715758-57716227;Right=chr5:57721867-57722438
chr5	CG	SV	60037466	60039818	101	.	.	ID=3320;Type=deletion;Left=chr5:60037466-60037931+;Right=chr5:60039427-60039818+;Distance=1961;DiscordantMatePairAlignments=101;LeftRepeat=MLT1E3:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67780732 (chr5:60037461-60039422);Frequency=0.88
chr5	CG	SV	60037466	60037931	101	+	.	ID=3320;Type=deletion;Left=chr5:60037466-60037931;Right=chr5:60039427-60039818
chr5	CG	SV	60039427	60039818	101	+	.	ID=3320;Type=deletion;Left=chr5:60037466-60037931;Right=chr5:60039427-60039818
chr5	CG	SV	65063855	65066590	68	.	.	ID=3318;Type=deletion;Left=chr5:65063855-65064317+;Right=chr5:65066152-65066590+;Distance=2297;DiscordantMatePairAlignments=68;LeftRepeat=SegDup;Self chain;RightRepeat=;LeftGenes=NM_020726:+;RightGenes=NM_020726:+;XRef=rs71731346 (chr5:65063855-65066152);Frequency=0.65
chr5	CG	SV	65063855	65064317	68	+	.	ID=3318;Type=deletion;Left=chr5:65063855-65064317;Right=chr5:65066152-65066590
chr5	CG	SV	65066152	65066590	68	+	.	ID=3318;Type=deletion;Left=chr5:65063855-65064317;Right=chr5:65066152-65066590
chr5	CG	SV	65539110	65563412	37	.	.	ID=3317;Type=deletion;Left=chr5:65539110-65539726+;Right=chr5:65562909-65563412+;Distance=23799;DiscordantMatePairAlignments=37;LeftRepeat=MER21C:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	65539110	65539726	37	+	.	ID=3317;Type=deletion;Left=chr5:65539110-65539726;Right=chr5:65562909-65563412
chr5	CG	SV	65562909	65563412	37	+	.	ID=3317;Type=deletion;Left=chr5:65539110-65539726;Right=chr5:65562909-65563412
chr5	CG	SV	68232893	118321229	12	.	.	ID=393;Type=probable-inversion;Left=chr5:68232893-68233273-;Right=chr5:118320808-118321229+;Distance=50087535;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_173666:-;XRef=;Frequency=0.00
chr5	CG	SV	68232893	68233273	12	-	.	ID=393;Type=probable-inversion;Left=chr5:68232893-68233273;Right=chr5:118320808-118321229
chr5	CG	SV	118320808	118321229	12	-	.	ID=393;Type=probable-inversion;Left=chr5:68232893-68233273;Right=chr5:118320808-118321229
chr5	CG	SV	68759802	68760676	13	.	.	ID=3316;Type=deletion;Left=chr5:68759802-68760315+;Right=chr5:68760254-68760676+;Distance=452;DiscordantMatePairAlignments=13;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_001038603:+;NM_144724:+;NR_029426:-;RightGenes=NM_001038603:+;NM_144724:+;NR_029426:-;XRef=;Frequency=0.94
chr5	CG	SV	68759802	68760315	13	+	.	ID=3316;Type=deletion;Left=chr5:68759802-68760315;Right=chr5:68760254-68760676
chr5	CG	SV	68760254	68760676	13	+	.	ID=3316;Type=deletion;Left=chr5:68759802-68760315;Right=chr5:68760254-68760676
chr5	CG	SV	78145555	78148026	38	.	.	ID=3312;Type=deletion;Left=chr5:78145555-78145846+;Right=chr5:78147626-78148026+;Distance=2071;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=;LeftGenes=NM_000046:-;RightGenes=NM_000046:-;NM_198709:-;XRef=rs72356644 (chr5:78145555-78147626);Frequency=0.35
chr5	CG	SV	78145555	78145846	38	+	.	ID=3312;Type=deletion;Left=chr5:78145555-78145846;Right=chr5:78147626-78148026
chr5	CG	SV	78147626	78148026	38	+	.	ID=3312;Type=deletion;Left=chr5:78145555-78145846;Right=chr5:78147626-78148026
chr5	CG	SV	88067785	88068516	15	.	.	ID=3304;Type=deletion;Left=chr5:88067785-88068328+;Right=chr5:88068115-88068516+;Distance=330;DiscordantMatePairAlignments=15;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001131005:-;NM_002397:-;RightGenes=NM_001131005:-;NM_002397:-;XRef=rs66495905 (chr5:88067768-88068098);Frequency=1.00
chr5	CG	SV	88067785	88068328	15	+	.	ID=3304;Type=deletion;Left=chr5:88067785-88068328;Right=chr5:88068115-88068516
chr5	CG	SV	88068115	88068516	15	+	.	ID=3304;Type=deletion;Left=chr5:88067785-88068328;Right=chr5:88068115-88068516
chr5	CG	SV	90535531	90538307	86	.	.	ID=3302;Type=deletion;Left=chr5:90535531-90535958+;Right=chr5:90537854-90538307+;Distance=2323;DiscordantMatePairAlignments=86;LeftRepeat=L1ME2:LINE:L1;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=;RightGenes=;XRef=rs72404559 (chr5:90535531-90537854);Frequency=1.00
chr5	CG	SV	90535531	90535958	86	+	.	ID=3302;Type=deletion;Left=chr5:90535531-90535958;Right=chr5:90537854-90538307
chr5	CG	SV	90537854	90538307	86	+	.	ID=3302;Type=deletion;Left=chr5:90535531-90535958;Right=chr5:90537854-90538307
chr5	CG	SV	93735398	93739207	66	.	.	ID=392;Type=probable-inversion;Left=chr5:93735398-93735869-;Right=chr5:93738713-93739207+;Distance=2844;DiscordantMatePairAlignments=66;LeftRepeat=;RightRepeat=;LeftGenes=NM_001145678:-;RightGenes=NM_001145678:-;XRef=;Frequency=0.00
chr5	CG	SV	93735398	93735869	66	-	.	ID=392;Type=probable-inversion;Left=chr5:93735398-93735869;Right=chr5:93738713-93739207
chr5	CG	SV	93738713	93739207	66	-	.	ID=392;Type=probable-inversion;Left=chr5:93735398-93735869;Right=chr5:93738713-93739207
chr5	CG	SV	98373017	98375579	11	.	.	ID=3295;Type=deletion;Left=chr5:98373017-98373449+;Right=chr5:98375382-98375579+;Distance=2365;DiscordantMatePairAlignments=11;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=HERVH:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr5	CG	SV	98373017	98373449	11	+	.	ID=3295;Type=deletion;Left=chr5:98373017-98373449;Right=chr5:98375382-98375579
chr5	CG	SV	98375382	98375579	11	+	.	ID=3295;Type=deletion;Left=chr5:98373017-98373449;Right=chr5:98375382-98375579
chr5	CG	SV	104388037	104388466	24	+	.	ID=3222;Type=interchromosomal;Left=chr5:104388037-104388466+;Right=chr10:59071734-59072169+;Distance=;DiscordantMatePairAlignments=24;LeftRepeat=L1MEc:LINE:L1;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	59071734	59072169	24	+	.	ID=3222;Type=interchromosomal;Left=chr5:104388037-104388466+;Right=chr10:59071734-59072169+;Distance=;DiscordantMatePairAlignments=24;LeftRepeat=L1MEc:LINE:L1;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	106352650	106354859	39	.	.	ID=3290;Type=deletion;Left=chr5:106352650-106353116+;Right=chr5:106354342-106354859+;Distance=1692;DiscordantMatePairAlignments=39;LeftRepeat=LTR67:LTR:ERVL;RightRepeat=MER65A:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs72419952 (chr5:106352650-106354329);Frequency=0.65
chr5	CG	SV	106352650	106353116	39	+	.	ID=3290;Type=deletion;Left=chr5:106352650-106353116;Right=chr5:106354342-106354859
chr5	CG	SV	106354342	106354859	39	+	.	ID=3290;Type=deletion;Left=chr5:106352650-106353116;Right=chr5:106354342-106354859
chr5	CG	SV	113075055	128695457	16	.	.	ID=1474;Type=tandem-duplication;Left=chr5:113075055-113075321-;Right=chr5:128695104-128695457-;Distance=15620136;DiscordantMatePairAlignments=16;LeftRepeat=HAL1:LINE:L1;RightRepeat=L1MA2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	113075055	113075321	16	-	.	ID=1474;Type=tandem-duplication;Left=chr5:113075055-113075321;Right=chr5:128695104-128695457
chr5	CG	SV	128695104	128695457	16	-	.	ID=1474;Type=tandem-duplication;Left=chr5:113075055-113075321;Right=chr5:128695104-128695457
chr5	CG	SV	115158366	115159225	22	.	.	ID=3288;Type=deletion;Left=chr5:115158366-115158734+;Right=chr5:115158715-115159225+;Distance=349;DiscordantMatePairAlignments=22;LeftRepeat=MER5A:DNA:MER1_type;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67420920 (chr5:115158366-115158715);Frequency=1.00
chr5	CG	SV	115158366	115158734	22	+	.	ID=3288;Type=deletion;Left=chr5:115158366-115158734;Right=chr5:115158715-115159225
chr5	CG	SV	115158715	115159225	22	+	.	ID=3288;Type=deletion;Left=chr5:115158366-115158734;Right=chr5:115158715-115159225
chr5	CG	SV	115374153	115378963	30	.	.	ID=391;Type=probable-inversion;Left=chr5:115374153-115374637-;Right=chr5:115378804-115378963+;Distance=4167;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=;LeftGenes=NM_173800:+;RightGenes=NM_173800:+;XRef=;Frequency=0.71
chr5	CG	SV	115374153	115374637	30	-	.	ID=391;Type=probable-inversion;Left=chr5:115374153-115374637;Right=chr5:115378804-115378963
chr5	CG	SV	115378804	115378963	30	-	.	ID=391;Type=probable-inversion;Left=chr5:115374153-115374637;Right=chr5:115378804-115378963
chr5	CG	SV	116210704	163407056	69	.	.	ID=1473;Type=tandem-duplication;Left=chr5:116210704-116211166-;Right=chr5:163406602-163407056-;Distance=47195890;DiscordantMatePairAlignments=69;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	116210704	116211166	69	-	.	ID=1473;Type=tandem-duplication;Left=chr5:116210704-116211166;Right=chr5:163406602-163407056
chr5	CG	SV	163406602	163407056	69	-	.	ID=1473;Type=tandem-duplication;Left=chr5:116210704-116211166;Right=chr5:163406602-163407056
chr5	CG	SV	119408045	119410981	55	.	.	ID=3284;Type=deletion;Left=chr5:119408045-119408385+;Right=chr5:119410579-119410981+;Distance=2534;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=L1ME3A:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72401694 (chr5:119408045-119410576);Frequency=0.88
chr5	CG	SV	119408045	119408385	55	+	.	ID=3284;Type=deletion;Left=chr5:119408045-119408385;Right=chr5:119410579-119410981
chr5	CG	SV	119410579	119410981	55	+	.	ID=3284;Type=deletion;Left=chr5:119408045-119408385;Right=chr5:119410579-119410981
chr5	CG	SV	120253252	120496403	32	.	.	ID=3283;Type=deletion;Left=chr5:120253252-120253809+;Right=chr5:120495940-120496403+;Distance=242688;DiscordantMatePairAlignments=32;LeftRepeat=L1P4:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	120253252	120253809	32	+	.	ID=3283;Type=deletion;Left=chr5:120253252-120253809;Right=chr5:120495940-120496403
chr5	CG	SV	120495940	120496403	32	+	.	ID=3283;Type=deletion;Left=chr5:120253252-120253809;Right=chr5:120495940-120496403
chr5	CG	SV	121604018	121609089	45	.	.	ID=3281;Type=deletion;Left=chr5:121604018-121604567+;Right=chr5:121608711-121609089+;Distance=4693;DiscordantMatePairAlignments=45;LeftRepeat=L1MA9:LINE:L1;RightRepeat=L1MA9:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr5	CG	SV	121604018	121604567	45	+	.	ID=3281;Type=deletion;Left=chr5:121604018-121604567;Right=chr5:121608711-121609089
chr5	CG	SV	121608711	121609089	45	+	.	ID=3281;Type=deletion;Left=chr5:121604018-121604567;Right=chr5:121608711-121609089
chr5	CG	SV	121952170	121955813	166	.	.	ID=3280;Type=deletion;Left=chr5:121952170-121952721+;Right=chr5:121955333-121955813+;Distance=3163;DiscordantMatePairAlignments=166;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	121952170	121952721	166	+	.	ID=3280;Type=deletion;Left=chr5:121952170-121952721;Right=chr5:121955333-121955813
chr5	CG	SV	121955333	121955813	166	+	.	ID=3280;Type=deletion;Left=chr5:121952170-121952721;Right=chr5:121955333-121955813
chr5	CG	SV	126486277	126487267	152	.	.	ID=3278;Type=deletion;Left=chr5:126486277-126486740+;Right=chr5:126486715-126487267+;Distance=438;DiscordantMatePairAlignments=152;LeftRepeat=HERV16:LTR:ERVL;RightRepeat=HERV16:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs67355812 (chr5:126486277-126486715);Frequency=0.82
chr5	CG	SV	126486277	126486740	152	+	.	ID=3278;Type=deletion;Left=chr5:126486277-126486740;Right=chr5:126486715-126487267
chr5	CG	SV	126486715	126487267	152	+	.	ID=3278;Type=deletion;Left=chr5:126486277-126486740;Right=chr5:126486715-126487267
chr5	CG	SV	127200231	127201697	22	.	.	ID=3277;Type=deletion;Left=chr5:127200231-127200743+;Right=chr5:127201181-127201697+;Distance=950;DiscordantMatePairAlignments=22;LeftRepeat=THE1C-int:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72270848 (chr5:127200229-127201179);Frequency=0.88
chr5	CG	SV	127200231	127200743	22	+	.	ID=3277;Type=deletion;Left=chr5:127200231-127200743;Right=chr5:127201181-127201697
chr5	CG	SV	127201181	127201697	22	+	.	ID=3277;Type=deletion;Left=chr5:127200231-127200743;Right=chr5:127201181-127201697
chr5	CG	SV	129523564	129917563	45	.	.	ID=3276;Type=deletion;Left=chr5:129523564-129524035+;Right=chr5:129917097-129917563+;Distance=393533;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=MER66C:LTR:ERV1;Self chain;LeftGenes=NM_175856:+;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	129523564	129524035	45	+	.	ID=3276;Type=deletion;Left=chr5:129523564-129524035;Right=chr5:129917097-129917563
chr5	CG	SV	129917097	129917563	45	+	.	ID=3276;Type=deletion;Left=chr5:129523564-129524035;Right=chr5:129917097-129917563
chr5	CG	SV	132946873	132953422	122	.	.	ID=3272;Type=deletion;Left=chr5:132946873-132947389+;Right=chr5:132952899-132953422+;Distance=6026;DiscordantMatePairAlignments=122;LeftRepeat=;RightRepeat=;LeftGenes=NM_015082:-;RightGenes=NM_015082:-;XRef=rs66911382 (chr5:132946863-132952889);Frequency=0.24
chr5	CG	SV	132946873	132947389	122	+	.	ID=3272;Type=deletion;Left=chr5:132946873-132947389;Right=chr5:132952899-132953422
chr5	CG	SV	132952899	132953422	122	+	.	ID=3272;Type=deletion;Left=chr5:132946873-132947389;Right=chr5:132952899-132953422
chr5	CG	SV	133458702	179588247	11	.	.	ID=3264;Type=deletion;Left=chr5:133458702-133459095+;Right=chr5:179587691-179588247+;Distance=46128989;DiscordantMatePairAlignments=11;LeftRepeat=MER103:DNA:DNA;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	133458702	133459095	11	+	.	ID=3264;Type=deletion;Left=chr5:133458702-133459095;Right=chr5:179587691-179588247
chr5	CG	SV	179587691	179588247	11	+	.	ID=3264;Type=deletion;Left=chr5:133458702-133459095;Right=chr5:179587691-179588247
chr5	CG	SV	135143128	135149019	84	.	.	ID=3271;Type=deletion;Left=chr5:135143128-135143728+;Right=chr5:135148627-135149019+;Distance=5499;DiscordantMatePairAlignments=84;LeftRepeat=SATR1:Satellite:Satellite;Self chain;Tandem period 76;RightRepeat=SATR1:Satellite:Satellite;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr5	CG	SV	135143128	135143728	84	+	.	ID=3271;Type=deletion;Left=chr5:135143128-135143728;Right=chr5:135148627-135149019
chr5	CG	SV	135148627	135149019	84	+	.	ID=3271;Type=deletion;Left=chr5:135143128-135143728;Right=chr5:135148627-135149019
chr5	CG	SV	136882605	136884716	51	.	.	ID=3270;Type=deletion;Left=chr5:136882605-136882918+;Right=chr5:136884321-136884716+;Distance=1716;DiscordantMatePairAlignments=51;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg/x:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67020614 (chr5:136882557-136884273);Frequency=1.00
chr5	CG	SV	136882605	136882918	51	+	.	ID=3270;Type=deletion;Left=chr5:136882605-136882918;Right=chr5:136884321-136884716
chr5	CG	SV	136884321	136884716	51	+	.	ID=3270;Type=deletion;Left=chr5:136882605-136882918;Right=chr5:136884321-136884716
chr5	CG	SV	137050477	137052248	81	.	.	ID=3269;Type=deletion;Left=chr5:137050477-137050970+;Right=chr5:137051801-137052248+;Distance=1324;DiscordantMatePairAlignments=81;LeftRepeat=SVA:Other:Other;RightRepeat=;LeftGenes=NM_017415:-;RightGenes=NM_017415:-;XRef=rs72257455 (chr5:137050461-137051785);Frequency=0.82
chr5	CG	SV	137050477	137050970	81	+	.	ID=3269;Type=deletion;Left=chr5:137050477-137050970;Right=chr5:137051801-137052248
chr5	CG	SV	137051801	137052248	81	+	.	ID=3269;Type=deletion;Left=chr5:137050477-137050970;Right=chr5:137051801-137052248
chr5	CG	SV	142841383	142846731	82	.	.	ID=3267;Type=deletion;Left=chr5:142841383-142841838+;Right=chr5:142846270-142846731+;Distance=4887;DiscordantMatePairAlignments=82;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr5	CG	SV	142841383	142841838	82	+	.	ID=3267;Type=deletion;Left=chr5:142841383-142841838;Right=chr5:142846270-142846731
chr5	CG	SV	142846270	142846731	82	+	.	ID=3267;Type=deletion;Left=chr5:142841383-142841838;Right=chr5:142846270-142846731
chr5	CG	SV	143492305	143495244	213	.	.	ID=1466;Type=distal-duplication;Left=chr5:143492305-143492681-;Right=chr5:143494743-143495244-;Distance=2563;DiscordantMatePairAlignments=213;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	143492305	143492681	213	-	.	ID=1466;Type=distal-duplication;Left=chr5:143492305-143492681;Right=chr5:143494743-143495244
chr5	CG	SV	143494743	143495244	213	-	.	ID=1466;Type=distal-duplication;Left=chr5:143492305-143492681;Right=chr5:143494743-143495244
chr5	CG	SV	143493060	143495719	134	.	.	ID=3266;Type=distal-duplication;Left=chr5:143493060-143493417+;Right=chr5:143495240-143495719+;Distance=2180;DiscordantMatePairAlignments=134;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	143493060	143493417	134	+	.	ID=3266;Type=distal-duplication;Left=chr5:143493060-143493417;Right=chr5:143495240-143495719
chr5	CG	SV	143495240	143495719	134	+	.	ID=3266;Type=distal-duplication;Left=chr5:143493060-143493417;Right=chr5:143495240-143495719
chr5	CG	SV	144852099	144853338	37	.	.	ID=3265;Type=deletion;Left=chr5:144852099-144852429+;Right=chr5:144853000-144853338+;Distance=901;DiscordantMatePairAlignments=37;LeftRepeat=L1MA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67005411 (chr5:144852097-144852998);Frequency=0.71
chr5	CG	SV	144852099	144852429	37	+	.	ID=3265;Type=deletion;Left=chr5:144852099-144852429;Right=chr5:144853000-144853338
chr5	CG	SV	144853000	144853338	37	+	.	ID=3265;Type=deletion;Left=chr5:144852099-144852429;Right=chr5:144853000-144853338
chr5	CG	SV	147533232	147534808	134	.	.	ID=4459;Type=complex;Left=chr5:147533232-147533686+;Right=chr5:147534438-147534808-;Distance=1576;DiscordantMatePairAlignments=134;LeftRepeat=;RightRepeat=;LeftGenes=NM_001001325:+;RightGenes=NM_001001325:+;XRef=;Frequency=1.00
chr5	CG	SV	147533232	147533686	134	+	.	ID=4459;Type=complex;Left=chr5:147533232-147533686;Right=chr5:147534438-147534808
chr5	CG	SV	147534438	147534808	134	+	.	ID=4459;Type=complex;Left=chr5:147533232-147533686;Right=chr5:147534438-147534808
chr5	CG	SV	147534081	147535447	38	.	.	ID=387;Type=complex;Left=chr5:147534081-147534432-;Right=chr5:147534971-147535447+;Distance=539;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=MIR3:SINE:MIR;LeftGenes=NM_001001325:+;RightGenes=NM_001001325:+;XRef=;Frequency=1.00
chr5	CG	SV	147534081	147534432	38	-	.	ID=387;Type=complex;Left=chr5:147534081-147534432;Right=chr5:147534971-147535447
chr5	CG	SV	147534971	147535447	38	-	.	ID=387;Type=complex;Left=chr5:147534081-147534432;Right=chr5:147534971-147535447
chr5	CG	SV	148677662	149858598	36	.	.	ID=386;Type=probable-inversion;Left=chr5:148677662-148678140-;Right=chr5:149858133-149858598+;Distance=1179993;DiscordantMatePairAlignments=36;LeftRepeat=L3:LINE:CR1;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_001146337:+;NM_152406:+;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	148677662	148678140	36	-	.	ID=386;Type=probable-inversion;Left=chr5:148677662-148678140;Right=chr5:149858133-149858598
chr5	CG	SV	149858133	149858598	36	-	.	ID=386;Type=probable-inversion;Left=chr5:148677662-148678140;Right=chr5:149858133-149858598
chr5	CG	SV	151436616	151443031	58	.	.	ID=3262;Type=deletion;Left=chr5:151436616-151437102+;Right=chr5:151442650-151443031+;Distance=6034;DiscordantMatePairAlignments=58;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70950672 (chr5:151436623-151442657);Frequency=0.88
chr5	CG	SV	151436616	151437102	58	+	.	ID=3262;Type=deletion;Left=chr5:151436616-151437102;Right=chr5:151442650-151443031
chr5	CG	SV	151442650	151443031	58	+	.	ID=3262;Type=deletion;Left=chr5:151436616-151437102;Right=chr5:151442650-151443031
chr5	CG	SV	156512968	169342197	45	.	.	ID=384;Type=probable-inversion;Left=chr5:156512968-156513349-;Right=chr5:169341706-169342197+;Distance=12828357;DiscordantMatePairAlignments=45;LeftRepeat=L1MD:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=NM_004946:+;XRef=;Frequency=0.00
chr5	CG	SV	156512968	156513349	45	-	.	ID=384;Type=probable-inversion;Left=chr5:156512968-156513349;Right=chr5:169341706-169342197
chr5	CG	SV	169341706	169342197	45	-	.	ID=384;Type=probable-inversion;Left=chr5:156512968-156513349;Right=chr5:169341706-169342197
chr5	CG	SV	156527451	156527857	68	+	.	ID=3038;Type=interchromosomal;Left=chr5:156527451-156527857+;Right=chr10:133957281-133957752+;Distance=;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_173575:-;XRef=;Frequency=0.00
chr10	CG	SV	133957281	133957752	68	+	.	ID=3038;Type=interchromosomal;Left=chr5:156527451-156527857+;Right=chr10:133957281-133957752+;Distance=;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_173575:-;XRef=;Frequency=0.00
chr5	CG	SV	165104041	165236820	74	.	.	ID=3259;Type=deletion;Left=chr5:165104041-165104531+;Right=chr5:165236386-165236820+;Distance=132345;DiscordantMatePairAlignments=74;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	165104041	165104531	74	+	.	ID=3259;Type=deletion;Left=chr5:165104041-165104531;Right=chr5:165236386-165236820
chr5	CG	SV	165236386	165236820	74	+	.	ID=3259;Type=deletion;Left=chr5:165104041-165104531;Right=chr5:165236386-165236820
chr5	CG	SV	169529816	169531833	65	.	.	ID=383;Type=distal-duplication;Left=chr5:169529816-169530045-;Right=chr5:169531333-169531833+;Distance=1288;DiscordantMatePairAlignments=65;LeftRepeat=MER20:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr5	CG	SV	169529816	169530045	65	-	.	ID=383;Type=distal-duplication;Left=chr5:169529816-169530045;Right=chr5:169531333-169531833
chr5	CG	SV	169531333	169531833	65	-	.	ID=383;Type=distal-duplication;Left=chr5:169529816-169530045;Right=chr5:169531333-169531833
chr5	CG	SV	169530275	169531327	63	.	.	ID=4456;Type=distal-duplication;Left=chr5:169530275-169530507+;Right=chr5:169530857-169531327-;Distance=1052;DiscordantMatePairAlignments=63;LeftRepeat=MIR3:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr5	CG	SV	169530275	169530507	63	+	.	ID=4456;Type=distal-duplication;Left=chr5:169530275-169530507;Right=chr5:169530857-169531327
chr5	CG	SV	169530857	169531327	63	+	.	ID=4456;Type=distal-duplication;Left=chr5:169530275-169530507;Right=chr5:169530857-169531327
chr5	CG	SV	178280974	178286144	45	.	.	ID=3255;Type=deletion;Left=chr5:178280974-178281434+;Right=chr5:178285807-178286144+;Distance=4833;DiscordantMatePairAlignments=45;LeftRepeat=L1MD2:LINE:L1;Self chain;RightRepeat=L1ME3B:LINE:L1;Self chain;LeftGenes=NM_030613:+;RightGenes=NM_030613:+;XRef=;Frequency=0.24
chr5	CG	SV	178280974	178281434	45	+	.	ID=3255;Type=deletion;Left=chr5:178280974-178281434;Right=chr5:178285807-178286144
chr5	CG	SV	178285807	178286144	45	+	.	ID=3255;Type=deletion;Left=chr5:178280974-178281434;Right=chr5:178285807-178286144
chr5	CG	SV	179718847	179720864	26	.	.	ID=4454;Type=probable-inversion;Left=chr5:179718847-179719160+;Right=chr5:179720460-179720864-;Distance=2017;DiscordantMatePairAlignments=26;LeftRepeat=L2:LINE:L2;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	179718847	179719160	26	+	.	ID=4454;Type=probable-inversion;Left=chr5:179718847-179719160;Right=chr5:179720460-179720864
chr5	CG	SV	179720460	179720864	26	+	.	ID=4454;Type=probable-inversion;Left=chr5:179718847-179719160;Right=chr5:179720460-179720864
chr6	CG	SV	414162	415002	60	.	.	ID=3254;Type=deletion;Left=chr6:414162-414586+;Right=chr6:414663-415002+;Distance=501;DiscordantMatePairAlignments=60;LeftRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Tandem TCTGTC;Tandem period 10;Tandem period 36;RightRepeat=(TCTCC)n:Simple_repeat:Simple_repeat;Tandem CTCTC;Tandem period 30;Tandem period 36;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	414162	414586	60	+	.	ID=3254;Type=deletion;Left=chr6:414162-414586;Right=chr6:414663-415002
chr6	CG	SV	414663	415002	60	+	.	ID=3254;Type=deletion;Left=chr6:414162-414586;Right=chr6:414663-415002
chr6	CG	SV	802143	803142	41	.	.	ID=3253;Type=deletion;Left=chr6:802143-802303+;Right=chr6:802910-803142+;Distance=767;DiscordantMatePairAlignments=41;LeftRepeat=;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Tandem ATCC;Tandem period 52;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr6	CG	SV	802143	802303	41	+	.	ID=3253;Type=deletion;Left=chr6:802143-802303;Right=chr6:802910-803142
chr6	CG	SV	802910	803142	41	+	.	ID=3253;Type=deletion;Left=chr6:802143-802303;Right=chr6:802910-803142
chr6	CG	SV	998494	999142	13	.	.	ID=1461;Type=tandem-duplication;Left=chr6:998494-998889-;Right=chr6:998951-999142-;Distance=253;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=(CATATA)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=NR_027115:-;NR_027116:-;RightGenes=NR_027115:-;NR_027116:-;XRef=;Frequency=0.88
chr6	CG	SV	998494	998889	13	-	.	ID=1461;Type=tandem-duplication;Left=chr6:998494-998889;Right=chr6:998951-999142
chr6	CG	SV	998951	999142	13	-	.	ID=1461;Type=tandem-duplication;Left=chr6:998494-998889;Right=chr6:998951-999142
chr6	CG	SV	4199863	4200718	35	.	.	ID=3249;Type=deletion;Left=chr6:4199863-4200264+;Right=chr6:4200352-4200718+;Distance=489;DiscordantMatePairAlignments=35;LeftRepeat=Self chain;Tandem period 49;RightRepeat=MER20:DNA:MER1_type;Self chain;LeftGenes=;RightGenes=;XRef=rs72174483 (chr6:4199813-4200156);Frequency=0.29
chr6	CG	SV	4199863	4200264	35	+	.	ID=3249;Type=deletion;Left=chr6:4199863-4200264;Right=chr6:4200352-4200718
chr6	CG	SV	4200352	4200718	35	+	.	ID=3249;Type=deletion;Left=chr6:4199863-4200264;Right=chr6:4200352-4200718
chr6	CG	SV	4982248	4984661	134	.	.	ID=3248;Type=deletion;Left=chr6:4982248-4982734+;Right=chr6:4984182-4984661+;Distance=1934;DiscordantMatePairAlignments=134;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	4982248	4982734	134	+	.	ID=3248;Type=deletion;Left=chr6:4982248-4982734;Right=chr6:4984182-4984661
chr6	CG	SV	4984182	4984661	134	+	.	ID=3248;Type=deletion;Left=chr6:4982248-4982734;Right=chr6:4984182-4984661
chr6	CG	SV	11664092	11664959	18	.	.	ID=3244;Type=deletion;Left=chr6:11664092-11664433+;Right=chr6:11664412-11664959+;Distance=320;DiscordantMatePairAlignments=18;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1MCc:LINE:L1;LeftGenes=NM_001100829:+;RightGenes=NM_001100829:+;XRef=rs70976611 (chr6:11664092-11664412);Frequency=1.00
chr6	CG	SV	11664092	11664433	18	+	.	ID=3244;Type=deletion;Left=chr6:11664092-11664433;Right=chr6:11664412-11664959
chr6	CG	SV	11664412	11664959	18	+	.	ID=3244;Type=deletion;Left=chr6:11664092-11664433;Right=chr6:11664412-11664959
chr6	CG	SV	12540000	12540505	81	.	.	ID=4453;Type=probable-inversion;Left=chr6:12540000-12540490+;Right=chr6:12540127-12540505-;Distance=505;DiscordantMatePairAlignments=81;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr6	CG	SV	12540000	12540490	81	+	.	ID=4453;Type=probable-inversion;Left=chr6:12540000-12540490;Right=chr6:12540127-12540505
chr6	CG	SV	12540127	12540505	81	+	.	ID=4453;Type=probable-inversion;Left=chr6:12540000-12540490;Right=chr6:12540127-12540505
chr6	CG	SV	13990531	13992212	17	.	.	ID=3243;Type=deletion;Left=chr6:13990531-13991001+;Right=chr6:13991834-13992212+;Distance=1303;DiscordantMatePairAlignments=17;LeftRepeat=HERV17:LTR:ERV1;RightRepeat=LTR17:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr6	CG	SV	13990531	13991001	17	+	.	ID=3243;Type=deletion;Left=chr6:13990531-13991001;Right=chr6:13991834-13992212
chr6	CG	SV	13991834	13992212	17	+	.	ID=3243;Type=deletion;Left=chr6:13990531-13991001;Right=chr6:13991834-13992212
chr6	CG	SV	16992947	16994460	26	.	.	ID=3241;Type=deletion;Left=chr6:16992947-16993305+;Right=chr6:16994075-16994460+;Distance=1128;DiscordantMatePairAlignments=26;LeftRepeat=LTR49:LTR:ERV1;RightRepeat=MER4D1:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr6	CG	SV	16992947	16993305	26	+	.	ID=3241;Type=deletion;Left=chr6:16992947-16993305;Right=chr6:16994075-16994460
chr6	CG	SV	16994075	16994460	26	+	.	ID=3241;Type=deletion;Left=chr6:16992947-16993305;Right=chr6:16994075-16994460
chr6	CG	SV	18510068	18511338	159	.	.	ID=3240;Type=deletion;Left=chr6:18510068-18510598+;Right=chr6:18510848-18511338+;Distance=780;DiscordantMatePairAlignments=159;LeftRepeat=;RightRepeat=MER103:DNA:DNA;LeftGenes=NM_182757:+;RightGenes=NM_182757:+;XRef=rs67792192 (chr6:18510066-18510846);Frequency=0.94
chr6	CG	SV	18510068	18510598	159	+	.	ID=3240;Type=deletion;Left=chr6:18510068-18510598;Right=chr6:18510848-18511338
chr6	CG	SV	18510848	18511338	159	+	.	ID=3240;Type=deletion;Left=chr6:18510068-18510598;Right=chr6:18510848-18511338
chr6	CG	SV	19784583	19785864	21	.	.	ID=3239;Type=deletion;Left=chr6:19784583-19785019+;Right=chr6:19785628-19785864+;Distance=1045;DiscordantMatePairAlignments=21;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr6	CG	SV	19784583	19785019	21	+	.	ID=3239;Type=deletion;Left=chr6:19784583-19785019;Right=chr6:19785628-19785864
chr6	CG	SV	19785628	19785864	21	+	.	ID=3239;Type=deletion;Left=chr6:19784583-19785019;Right=chr6:19785628-19785864
chr6	CG	SV	24919857	24926477	22	.	.	ID=3237;Type=deletion;Left=chr6:24919857-24920403+;Right=chr6:24925932-24926477+;Distance=6075;DiscordantMatePairAlignments=22;LeftRepeat=;RightRepeat=;LeftGenes=NM_014722:-;RightGenes=NM_014722:-;XRef=rs72246104 (chr6:24919854-24925929);Frequency=0.94
chr6	CG	SV	24919857	24920403	22	+	.	ID=3237;Type=deletion;Left=chr6:24919857-24920403;Right=chr6:24925932-24926477
chr6	CG	SV	24925932	24926477	22	+	.	ID=3237;Type=deletion;Left=chr6:24919857-24920403;Right=chr6:24925932-24926477
chr6	CG	SV	32886732	32888160	97	.	.	ID=3235;Type=deletion;Left=chr6:32886732-32887196+;Right=chr6:32887798-32888160+;Distance=1066;DiscordantMatePairAlignments=97;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=L1MC5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs70976641 (chr6:32886732-32887798);Frequency=0.94
chr6	CG	SV	32886732	32887196	97	+	.	ID=3235;Type=deletion;Left=chr6:32886732-32887196;Right=chr6:32887798-32888160
chr6	CG	SV	32887798	32888160	97	+	.	ID=3235;Type=deletion;Left=chr6:32886732-32887196;Right=chr6:32887798-32888160
chr6	CG	SV	33201402	33202320	21	.	.	ID=3234;Type=deletion;Left=chr6:33201402-33201904+;Right=chr6:33201733-33202320+;Distance=331;DiscordantMatePairAlignments=21;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NR_001435:+;RightGenes=NR_001435:+;XRef=;Frequency=0.94
chr6	CG	SV	33201402	33201904	21	+	.	ID=3234;Type=deletion;Left=chr6:33201402-33201904;Right=chr6:33201733-33202320
chr6	CG	SV	33201733	33202320	21	+	.	ID=3234;Type=deletion;Left=chr6:33201402-33201904;Right=chr6:33201733-33202320
chr6	CG	SV	33691176	33694240	142	.	.	ID=3233;Type=deletion;Left=chr6:33691176-33691682+;Right=chr6:33693823-33694240+;Distance=2647;DiscordantMatePairAlignments=142;LeftRepeat=AluSq:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67749647 (chr6:33691175-33693822);Frequency=0.53
chr6	CG	SV	33691176	33691682	142	+	.	ID=3233;Type=deletion;Left=chr6:33691176-33691682;Right=chr6:33693823-33694240
chr6	CG	SV	33693823	33694240	142	+	.	ID=3233;Type=deletion;Left=chr6:33691176-33691682;Right=chr6:33693823-33694240
chr6	CG	SV	34807900	34809560	118	.	.	ID=3232;Type=deletion;Left=chr6:34807900-34808195+;Right=chr6:34809096-34809560+;Distance=1196;DiscordantMatePairAlignments=118;LeftRepeat=MIRb:SINE:MIR;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr6	CG	SV	34807900	34808195	118	+	.	ID=3232;Type=deletion;Left=chr6:34807900-34808195;Right=chr6:34809096-34809560
chr6	CG	SV	34809096	34809560	118	+	.	ID=3232;Type=deletion;Left=chr6:34807900-34808195;Right=chr6:34809096-34809560
chr6	CG	SV	35734412	35738039	41	.	.	ID=3231;Type=deletion;Left=chr6:35734412-35734746+;Right=chr6:35737724-35738039+;Distance=3312;DiscordantMatePairAlignments=41;LeftRepeat=L1M4:LINE:L1;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_001145775:-;NM_001145776:-;NM_001145777:-;NM_004117:-;RightGenes=NM_001145775:-;NM_001145776:-;NM_001145777:-;NM_004117:-;XRef=rs67674318 (chr6:35734410-35737722);Frequency=0.82
chr6	CG	SV	35734412	35734746	41	+	.	ID=3231;Type=deletion;Left=chr6:35734412-35734746;Right=chr6:35737724-35738039
chr6	CG	SV	35737724	35738039	41	+	.	ID=3231;Type=deletion;Left=chr6:35734412-35734746;Right=chr6:35737724-35738039
chr6	CG	SV	41972822	41973752	43	.	.	ID=3229;Type=deletion;Left=chr6:41972822-41973250+;Right=chr6:41973385-41973752+;Distance=563;DiscordantMatePairAlignments=43;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr6	CG	SV	41972822	41973250	43	+	.	ID=3229;Type=deletion;Left=chr6:41972822-41973250;Right=chr6:41973385-41973752
chr6	CG	SV	41973385	41973752	43	+	.	ID=3229;Type=deletion;Left=chr6:41972822-41973250;Right=chr6:41973385-41973752
chr6	CG	SV	51307435	51308497	37	.	.	ID=3220;Type=deletion;Left=chr6:51307435-51307736+;Right=chr6:51308085-51308497+;Distance=650;DiscordantMatePairAlignments=37;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr6	CG	SV	51307435	51307736	37	+	.	ID=3220;Type=deletion;Left=chr6:51307435-51307736;Right=chr6:51308085-51308497
chr6	CG	SV	51308085	51308497	37	+	.	ID=3220;Type=deletion;Left=chr6:51307435-51307736;Right=chr6:51308085-51308497
chr6	CG	SV	51844070	51845173	82	.	.	ID=3218;Type=deletion;Left=chr6:51844070-51844447+;Right=chr6:51844765-51845173+;Distance=695;DiscordantMatePairAlignments=82;LeftRepeat=L1ME1:LINE:L1;RightRepeat=HAL1:LINE:L1;LeftGenes=NM_138694:-;NM_170724:-;RightGenes=NM_138694:-;NM_170724:-;XRef=rs66493455 (chr6:51844068-51844763);Frequency=0.88
chr6	CG	SV	51844070	51844447	82	+	.	ID=3218;Type=deletion;Left=chr6:51844070-51844447;Right=chr6:51844765-51845173
chr6	CG	SV	51844765	51845173	82	+	.	ID=3218;Type=deletion;Left=chr6:51844070-51844447;Right=chr6:51844765-51845173
chr6	CG	SV	54032473	54036668	48	.	.	ID=1451;Type=complex;Left=chr6:54032473-54032616-;Right=chr6:54036150-54036668-;Distance=4052;DiscordantMatePairAlignments=48;LeftRepeat=;RightRepeat=;LeftGenes=NM_138569:+;RightGenes=NM_138569:+;XRef=;Frequency=0.88
chr6	CG	SV	54032473	54032616	48	-	.	ID=1451;Type=complex;Left=chr6:54032473-54032616;Right=chr6:54036150-54036668
chr6	CG	SV	54036150	54036668	48	-	.	ID=1451;Type=complex;Left=chr6:54032473-54032616;Right=chr6:54036150-54036668
chr6	CG	SV	54032764	54043281	54	.	.	ID=3215;Type=complex;Left=chr6:54032764-54032916+;Right=chr6:54042789-54043281+;Distance=10025;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=;LeftGenes=NM_138569:+;RightGenes=NM_138569:+;XRef=;Frequency=0.88
chr6	CG	SV	54032764	54032916	54	+	.	ID=3215;Type=complex;Left=chr6:54032764-54032916;Right=chr6:54042789-54043281
chr6	CG	SV	54042789	54043281	54	+	.	ID=3215;Type=complex;Left=chr6:54032764-54032916;Right=chr6:54042789-54043281
chr6	CG	SV	54036668	54043305	96	.	.	ID=3216;Type=complex;Left=chr6:54036668-54037041+;Right=chr6:54042787-54043305+;Distance=6119;DiscordantMatePairAlignments=96;LeftRepeat=;RightRepeat=;LeftGenes=NM_138569:+;RightGenes=NM_138569:+;XRef=;Frequency=0.88
chr6	CG	SV	54036668	54037041	96	+	.	ID=3216;Type=complex;Left=chr6:54036668-54037041;Right=chr6:54042787-54043305
chr6	CG	SV	54042787	54043305	96	+	.	ID=3216;Type=complex;Left=chr6:54036668-54037041;Right=chr6:54042787-54043305
chr6	CG	SV	57392870	57397719	98	.	.	ID=3212;Type=deletion;Left=chr6:57392870-57393458+;Right=chr6:57397315-57397719+;Distance=4445;DiscordantMatePairAlignments=98;LeftRepeat=;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs72273072 (chr6:57392872-57397315);Frequency=1.00
chr6	CG	SV	57392870	57393458	98	+	.	ID=3212;Type=deletion;Left=chr6:57392870-57393458;Right=chr6:57397315-57397719
chr6	CG	SV	57397315	57397719	98	+	.	ID=3212;Type=deletion;Left=chr6:57392870-57393458;Right=chr6:57397315-57397719
chr6	CG	SV	57405149	57409661	26	.	.	ID=3211;Type=deletion;Left=chr6:57405149-57405536+;Right=chr6:57409205-57409661+;Distance=4056;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=;Frequency=1.00
chr6	CG	SV	57405149	57405536	26	+	.	ID=3211;Type=deletion;Left=chr6:57405149-57405536;Right=chr6:57409205-57409661
chr6	CG	SV	57409205	57409661	26	+	.	ID=3211;Type=deletion;Left=chr6:57405149-57405536;Right=chr6:57409205-57409661
chr6	CG	SV	57531027	57537556	270	.	.	ID=3210;Type=deletion;Left=chr6:57531027-57531492+;Right=chr6:57537079-57537556+;Distance=6052;DiscordantMatePairAlignments=270;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs68023605 (chr6:57531027-57537079);Frequency=1.00
chr6	CG	SV	57531027	57531492	270	+	.	ID=3210;Type=deletion;Left=chr6:57531027-57531492;Right=chr6:57537079-57537556
chr6	CG	SV	57537079	57537556	270	+	.	ID=3210;Type=deletion;Left=chr6:57531027-57531492;Right=chr6:57537079-57537556
chr6	CG	SV	57586119	57587331	152	.	.	ID=3209;Type=deletion;Left=chr6:57586119-57586598+;Right=chr6:57586826-57587331+;Distance=707;DiscordantMatePairAlignments=152;LeftRepeat=L1PA2:LINE:L1;RightRepeat=L1ME1:LINE:L1;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs72194487 (chr6:57586107-57586814);Frequency=1.00
chr6	CG	SV	57586119	57586598	152	+	.	ID=3209;Type=deletion;Left=chr6:57586119-57586598;Right=chr6:57586826-57587331
chr6	CG	SV	57586826	57587331	152	+	.	ID=3209;Type=deletion;Left=chr6:57586119-57586598;Right=chr6:57586826-57587331
chr6	CG	SV	57691648	57698763	13	.	.	ID=3208;Type=deletion;Left=chr6:57691648-57691919+;Right=chr6:57698241-57698763+;Distance=6593;DiscordantMatePairAlignments=13;LeftRepeat=(TTTTTA)n:Simple_repeat:Simple_repeat;RightRepeat=Charlie5:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs66514956 (chr6:57691631-57698224);Frequency=1.00
chr6	CG	SV	57691648	57691919	13	+	.	ID=3208;Type=deletion;Left=chr6:57691648-57691919;Right=chr6:57698241-57698763
chr6	CG	SV	57698241	57698763	13	+	.	ID=3208;Type=deletion;Left=chr6:57691648-57691919;Right=chr6:57698241-57698763
chr6	CG	SV	62606288	62609588	47	.	.	ID=1440;Type=tandem-duplication;Left=chr6:62606288-62606676-;Right=chr6:62609285-62609588-;Distance=2912;DiscordantMatePairAlignments=47;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_152688:-;RightGenes=NM_152688:-;XRef=;Frequency=0.00
chr6	CG	SV	62606288	62606676	47	-	.	ID=1440;Type=tandem-duplication;Left=chr6:62606288-62606676;Right=chr6:62609285-62609588
chr6	CG	SV	62609285	62609588	47	-	.	ID=1440;Type=tandem-duplication;Left=chr6:62606288-62606676;Right=chr6:62609285-62609588
chr6	CG	SV	64724970	64726795	94	.	.	ID=3197;Type=deletion;Left=chr6:64724970-64725352+;Right=chr6:64726309-64726795+;Distance=1339;DiscordantMatePairAlignments=94;LeftRepeat=MER82:DNA:MER2_type;Self chain;RightRepeat=MLT1A1:LTR:MaLR;LeftGenes=NM_001142800:-;RightGenes=NM_001142800:-;XRef=rs71765003 (chr6:64724970-64726309);Frequency=0.65
chr6	CG	SV	64724970	64725352	94	+	.	ID=3197;Type=deletion;Left=chr6:64724970-64725352;Right=chr6:64726309-64726795
chr6	CG	SV	64726309	64726795	94	+	.	ID=3197;Type=deletion;Left=chr6:64724970-64725352;Right=chr6:64726309-64726795
chr6	CG	SV	66316753	66319277	281	.	.	ID=3196;Type=deletion;Left=chr6:66316753-66317280+;Right=chr6:66318747-66319277+;Distance=1994;DiscordantMatePairAlignments=281;LeftRepeat=;RightRepeat=L1HS:LINE:L1;LeftGenes=NM_001142800:-;NM_001142801:-;NM_198283:-;RightGenes=NM_001142800:-;NM_001142801:-;NM_198283:-;XRef=rs67260056 (chr6:66316748-66318742);Frequency=1.00
chr6	CG	SV	66316753	66317280	281	+	.	ID=3196;Type=deletion;Left=chr6:66316753-66317280;Right=chr6:66318747-66319277
chr6	CG	SV	66318747	66319277	281	+	.	ID=3196;Type=deletion;Left=chr6:66316753-66317280;Right=chr6:66318747-66319277
chr6	CG	SV	68158254	68169283	38	.	.	ID=3194;Type=deletion;Left=chr6:68158254-68158671+;Right=chr6:68168889-68169283+;Distance=10635;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	68158254	68158671	38	+	.	ID=3194;Type=deletion;Left=chr6:68158254-68158671;Right=chr6:68168889-68169283
chr6	CG	SV	68168889	68169283	38	+	.	ID=3194;Type=deletion;Left=chr6:68158254-68158671;Right=chr6:68168889-68169283
chr6	CG	SV	69198885	69200220	186	.	.	ID=3193;Type=deletion;Left=chr6:69198885-69199376+;Right=chr6:69199828-69200220+;Distance=943;DiscordantMatePairAlignments=186;LeftRepeat=;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr6	CG	SV	69198885	69199376	186	+	.	ID=3193;Type=deletion;Left=chr6:69198885-69199376;Right=chr6:69199828-69200220
chr6	CG	SV	69199828	69200220	186	+	.	ID=3193;Type=deletion;Left=chr6:69198885-69199376;Right=chr6:69199828-69200220
chr6	CG	SV	74648790	74659557	58	.	.	ID=3190;Type=deletion;Left=chr6:74648790-74649241+;Right=chr6:74659169-74659557+;Distance=10379;DiscordantMatePairAlignments=58;LeftRepeat=;RightRepeat=MSTA:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr6	CG	SV	74648790	74649241	58	+	.	ID=3190;Type=deletion;Left=chr6:74648790-74649241;Right=chr6:74659169-74659557
chr6	CG	SV	74659169	74659557	58	+	.	ID=3190;Type=deletion;Left=chr6:74648790-74649241;Right=chr6:74659169-74659557
chr6	CG	SV	74922163	74923796	125	.	.	ID=3189;Type=deletion;Left=chr6:74922163-74922643+;Right=chr6:74923314-74923796+;Distance=1151;DiscordantMatePairAlignments=125;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66965905 (chr6:74922153-74923304);Frequency=0.94
chr6	CG	SV	74922163	74922643	125	+	.	ID=3189;Type=deletion;Left=chr6:74922163-74922643;Right=chr6:74923314-74923796
chr6	CG	SV	74923314	74923796	125	+	.	ID=3189;Type=deletion;Left=chr6:74922163-74922643;Right=chr6:74923314-74923796
chr6	CG	SV	77154216	77159845	36	.	.	ID=3188;Type=deletion;Left=chr6:77154216-77154690+;Right=chr6:77159365-77159845+;Distance=5149;DiscordantMatePairAlignments=36;LeftRepeat=L1MA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67536422 (chr6:77154212-77159361);Frequency=0.71
chr6	CG	SV	77154216	77154690	36	+	.	ID=3188;Type=deletion;Left=chr6:77154216-77154690;Right=chr6:77159365-77159845
chr6	CG	SV	77159365	77159845	36	+	.	ID=3188;Type=deletion;Left=chr6:77154216-77154690;Right=chr6:77159365-77159845
chr6	CG	SV	81112924	81115052	116	.	.	ID=3186;Type=deletion;Left=chr6:81112924-81113335+;Right=chr6:81114606-81115052+;Distance=1682;DiscordantMatePairAlignments=116;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	81112924	81113335	116	+	.	ID=3186;Type=deletion;Left=chr6:81112924-81113335;Right=chr6:81114606-81115052
chr6	CG	SV	81114606	81115052	116	+	.	ID=3186;Type=deletion;Left=chr6:81112924-81113335;Right=chr6:81114606-81115052
chr6	CG	SV	82134807	82147963	44	.	.	ID=377;Type=probable-inversion;Left=chr6:82134807-82135227-;Right=chr6:82147560-82147963+;Distance=12333;DiscordantMatePairAlignments=44;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	82134807	82135227	44	-	.	ID=377;Type=probable-inversion;Left=chr6:82134807-82135227;Right=chr6:82147560-82147963
chr6	CG	SV	82147560	82147963	44	-	.	ID=377;Type=probable-inversion;Left=chr6:82134807-82135227;Right=chr6:82147560-82147963
chr6	CG	SV	85374877	85381362	88	.	.	ID=3185;Type=deletion;Left=chr6:85374877-85375375+;Right=chr6:85380954-85381362+;Distance=6077;DiscordantMatePairAlignments=88;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70976689 (chr6:85374870-85380947);Frequency=1.00
chr6	CG	SV	85374877	85375375	88	+	.	ID=3185;Type=deletion;Left=chr6:85374877-85375375;Right=chr6:85380954-85381362
chr6	CG	SV	85380954	85381362	88	+	.	ID=3185;Type=deletion;Left=chr6:85374877-85375375;Right=chr6:85380954-85381362
chr6	CG	SV	89980352	89980662	44	.	.	ID=4448;Type=probable-inversion;Left=chr6:89980352-89980812+;Right=chr6:89980350-89980662-;Distance=310;DiscordantMatePairAlignments=44;LeftRepeat=L1M3:LINE:L1;RightRepeat=L1MA7:LINE:L1;LeftGenes=NM_002042:-;RightGenes=NM_002042:-;XRef=;Frequency=1.00
chr6	CG	SV	89980352	89980812	44	+	.	ID=4448;Type=probable-inversion;Left=chr6:89980352-89980812;Right=chr6:89980350-89980662
chr6	CG	SV	89980350	89980662	44	+	.	ID=4448;Type=probable-inversion;Left=chr6:89980352-89980812;Right=chr6:89980350-89980662
chr6	CG	SV	92967388	92968226	11	.	.	ID=3184;Type=deletion;Left=chr6:92967388-92967869+;Right=chr6:92967711-92968226+;Distance=323;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=LTR8A-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr6	CG	SV	92967388	92967869	11	+	.	ID=3184;Type=deletion;Left=chr6:92967388-92967869;Right=chr6:92967711-92968226
chr6	CG	SV	92967711	92968226	11	+	.	ID=3184;Type=deletion;Left=chr6:92967388-92967869;Right=chr6:92967711-92968226
chr6	CG	SV	94797795	94798049	35	.	.	ID=4447;Type=probable-inversion;Left=chr6:94797795-94798049+;Right=chr6:94797821-94798049-;Distance=254;DiscordantMatePairAlignments=35;LeftRepeat=;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr6	CG	SV	94797795	94798049	35	+	.	ID=4447;Type=probable-inversion;Left=chr6:94797795-94798049;Right=chr6:94797821-94798049
chr6	CG	SV	94797821	94798049	35	+	.	ID=4447;Type=probable-inversion;Left=chr6:94797795-94798049;Right=chr6:94797821-94798049
chr6	CG	SV	95250045	95251433	39	.	.	ID=3183;Type=deletion;Left=chr6:95250045-95250472+;Right=chr6:95251059-95251433+;Distance=1014;DiscordantMatePairAlignments=39;LeftRepeat=L1M5:LINE:L1;RightRepeat=L1MEc:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67517600 (chr6:95250045-95251059);Frequency=0.76
chr6	CG	SV	95250045	95250472	39	+	.	ID=3183;Type=deletion;Left=chr6:95250045-95250472;Right=chr6:95251059-95251433
chr6	CG	SV	95251059	95251433	39	+	.	ID=3183;Type=deletion;Left=chr6:95250045-95250472;Right=chr6:95251059-95251433
chr6	CG	SV	100141222	100142452	123	.	.	ID=3181;Type=deletion;Left=chr6:100141222-100141655+;Right=chr6:100142042-100142452+;Distance=820;DiscordantMatePairAlignments=123;LeftRepeat=Tigger1:DNA:MER2_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67162792 (chr6:100141227-100142042);Frequency=1.00
chr6	CG	SV	100141222	100141655	123	+	.	ID=3181;Type=deletion;Left=chr6:100141222-100141655;Right=chr6:100142042-100142452
chr6	CG	SV	100142042	100142452	123	+	.	ID=3181;Type=deletion;Left=chr6:100141222-100141655;Right=chr6:100142042-100142452
chr6	CG	SV	101150632	101345173	17	.	.	ID=1434;Type=tandem-duplication;Left=chr6:101150632-101150970-;Right=chr6:101344654-101345173-;Distance=194203;DiscordantMatePairAlignments=17;LeftRepeat=L1M5:LINE:L1;RightRepeat=Self chain;LeftGenes=NM_006828:-;RightGenes=NM_006828:-;XRef=;Frequency=0.00
chr6	CG	SV	101150632	101150970	17	-	.	ID=1434;Type=tandem-duplication;Left=chr6:101150632-101150970;Right=chr6:101344654-101345173
chr6	CG	SV	101344654	101345173	17	-	.	ID=1434;Type=tandem-duplication;Left=chr6:101150632-101150970;Right=chr6:101344654-101345173
chr6	CG	SV	103844157	103870042	23	.	.	ID=3180;Type=deletion;Left=chr6:103844157-103844403+;Right=chr6:103869582-103870042+;Distance=25425;DiscordantMatePairAlignments=23;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1PA7:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr6	CG	SV	103844157	103844403	23	+	.	ID=3180;Type=deletion;Left=chr6:103844157-103844403;Right=chr6:103869582-103870042
chr6	CG	SV	103869582	103870042	23	+	.	ID=3180;Type=deletion;Left=chr6:103844157-103844403;Right=chr6:103869582-103870042
chr6	CG	SV	107090329	107090989	14	.	.	ID=3176;Type=deletion;Left=chr6:107090329-107090855+;Right=chr6:107090648-107090989+;Distance=319;DiscordantMatePairAlignments=14;LeftRepeat=L1MC4:LINE:L1;Tandem T;RightRepeat=L1MC4:LINE:L1;LeftGenes=NM_001624:+;RightGenes=NM_001624:+;XRef=rs72069284 (chr6:107090315-107090634);Frequency=1.00
chr6	CG	SV	107090329	107090855	14	+	.	ID=3176;Type=deletion;Left=chr6:107090329-107090855;Right=chr6:107090648-107090989
chr6	CG	SV	107090648	107090989	14	+	.	ID=3176;Type=deletion;Left=chr6:107090329-107090855;Right=chr6:107090648-107090989
chr6	CG	SV	108138035	108139624	86	.	.	ID=3175;Type=deletion;Left=chr6:108138035-108138512+;Right=chr6:108139095-108139624+;Distance=1060;DiscordantMatePairAlignments=86;LeftRepeat=;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_198081:-;RightGenes=NM_198081:-;XRef=rs66561424 (chr6:108138035-108139079);Frequency=1.00
chr6	CG	SV	108138035	108138512	86	+	.	ID=3175;Type=deletion;Left=chr6:108138035-108138512;Right=chr6:108139095-108139624
chr6	CG	SV	108139095	108139624	86	+	.	ID=3175;Type=deletion;Left=chr6:108138035-108138512;Right=chr6:108139095-108139624
chr6	CG	SV	113807653	113810225	33	.	.	ID=3173;Type=deletion;Left=chr6:113807653-113808153+;Right=chr6:113809812-113810225+;Distance=2159;DiscordantMatePairAlignments=33;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	113807653	113808153	33	+	.	ID=3173;Type=deletion;Left=chr6:113807653-113808153;Right=chr6:113809812-113810225
chr6	CG	SV	113809812	113810225	33	+	.	ID=3173;Type=deletion;Left=chr6:113807653-113808153;Right=chr6:113809812-113810225
chr6	CG	SV	119303327	119304017	31	.	.	ID=1432;Type=tandem-duplication;Left=chr6:119303327-119303689-;Right=chr6:119303675-119304017-;Distance=328;DiscordantMatePairAlignments=31;LeftRepeat=L1M1:LINE:L1;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	119303327	119303689	31	-	.	ID=1432;Type=tandem-duplication;Left=chr6:119303327-119303689;Right=chr6:119303675-119304017
chr6	CG	SV	119303675	119304017	31	-	.	ID=1432;Type=tandem-duplication;Left=chr6:119303327-119303689;Right=chr6:119303675-119304017
chr6	CG	SV	125750464	125753366	25	.	.	ID=3165;Type=deletion;Left=chr6:125750464-125750795+;Right=chr6:125753067-125753366+;Distance=2603;DiscordantMatePairAlignments=25;LeftRepeat=L1MDa:LINE:L1;Tandem period 11;Tandem period 8;RightRepeat=L1MDa:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr6	CG	SV	125750464	125750795	25	+	.	ID=3165;Type=deletion;Left=chr6:125750464-125750795;Right=chr6:125753067-125753366
chr6	CG	SV	125753067	125753366	25	+	.	ID=3165;Type=deletion;Left=chr6:125750464-125750795;Right=chr6:125753067-125753366
chr6	CG	SV	129361211	129367720	283	.	.	ID=3164;Type=deletion;Left=chr6:129361211-129361699+;Right=chr6:129367270-129367720+;Distance=6059;DiscordantMatePairAlignments=283;LeftRepeat=;RightRepeat=;LeftGenes=NM_000426:+;NM_001079823:+;RightGenes=NM_000426:+;NM_001079823:+;XRef=rs71701877 (chr6:129361208-129367267);Frequency=0.41
chr6	CG	SV	129361211	129361699	283	+	.	ID=3164;Type=deletion;Left=chr6:129361211-129361699;Right=chr6:129367270-129367720
chr6	CG	SV	129367270	129367720	283	+	.	ID=3164;Type=deletion;Left=chr6:129361211-129361699;Right=chr6:129367270-129367720
chr6	CG	SV	129778782	129779251	10	.	.	ID=3163;Type=deletion;Left=chr6:129778782-129779347+;Right=chr6:129779096-129779251+;Distance=314;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_000426:+;NM_001079823:+;RightGenes=NM_000426:+;NM_001079823:+;XRef=;Frequency=0.71
chr6	CG	SV	129778782	129779347	10	+	.	ID=3163;Type=deletion;Left=chr6:129778782-129779347;Right=chr6:129779096-129779251
chr6	CG	SV	129779096	129779251	10	+	.	ID=3163;Type=deletion;Left=chr6:129778782-129779347;Right=chr6:129779096-129779251
chr6	CG	SV	131926366	131927041	48	.	.	ID=376;Type=distal-duplication;Left=chr6:131926366-131926491-;Right=chr6:131926654-131927041+;Distance=163;DiscordantMatePairAlignments=48;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	131926366	131926491	48	-	.	ID=376;Type=distal-duplication;Left=chr6:131926366-131926491;Right=chr6:131926654-131927041
chr6	CG	SV	131926654	131927041	48	-	.	ID=376;Type=distal-duplication;Left=chr6:131926366-131926491;Right=chr6:131926654-131927041
chr6	CG	SV	131926537	131926608	15	.	.	ID=4446;Type=distal-duplication;Left=chr6:131926537-131927039+;Right=chr6:131926510-131926608-;Distance=71;DiscordantMatePairAlignments=15;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	131926537	131927039	15	+	.	ID=4446;Type=distal-duplication;Left=chr6:131926537-131927039;Right=chr6:131926510-131926608
chr6	CG	SV	131926510	131926608	15	+	.	ID=4446;Type=distal-duplication;Left=chr6:131926537-131927039;Right=chr6:131926510-131926608
chr6	CG	SV	133383527	133390024	139	.	.	ID=3162;Type=deletion;Left=chr6:133383527-133383938+;Right=chr6:133389592-133390024+;Distance=6065;DiscordantMatePairAlignments=139;LeftRepeat=L1ME3B:LINE:L1;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70979714 (chr6:133383513-133389578);Frequency=0.82
chr6	CG	SV	133383527	133383938	139	+	.	ID=3162;Type=deletion;Left=chr6:133383527-133383938;Right=chr6:133389592-133390024
chr6	CG	SV	133389592	133390024	139	+	.	ID=3162;Type=deletion;Left=chr6:133383527-133383938;Right=chr6:133389592-133390024
chr6	CG	SV	133991366	133992610	66	.	.	ID=3161;Type=deletion;Left=chr6:133991366-133991795+;Right=chr6:133992232-133992610+;Distance=866;DiscordantMatePairAlignments=66;LeftRepeat=ERVL-C1:LTR:ERVL;RightRepeat=ERVL-C1:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr6	CG	SV	133991366	133991795	66	+	.	ID=3161;Type=deletion;Left=chr6:133991366-133991795;Right=chr6:133992232-133992610
chr6	CG	SV	133992232	133992610	66	+	.	ID=3161;Type=deletion;Left=chr6:133991366-133991795;Right=chr6:133992232-133992610
chr6	CG	SV	134310673	134312044	375	.	.	ID=3160;Type=deletion;Left=chr6:134310673-134311213+;Right=chr6:134311421-134312044+;Distance=748;DiscordantMatePairAlignments=375;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66832735 (chr6:134310669-134311417);Frequency=1.00
chr6	CG	SV	134310673	134311213	375	+	.	ID=3160;Type=deletion;Left=chr6:134310673-134311213;Right=chr6:134311421-134312044
chr6	CG	SV	134311421	134312044	375	+	.	ID=3160;Type=deletion;Left=chr6:134310673-134311213;Right=chr6:134311421-134312044
chr6	CG	SV	137355387	137356293	52	.	.	ID=3151;Type=deletion;Left=chr6:137355387-137355843+;Right=chr6:137355880-137356293+;Distance=493;DiscordantMatePairAlignments=52;LeftRepeat=L1MC:LINE:L1;RightRepeat=;LeftGenes=NR_027994:-;RightGenes=NR_027994:-;XRef=rs67777601 (chr6:137355386-137355879);Frequency=1.00
chr6	CG	SV	137355387	137355843	52	+	.	ID=3151;Type=deletion;Left=chr6:137355387-137355843;Right=chr6:137355880-137356293
chr6	CG	SV	137355880	137356293	52	+	.	ID=3151;Type=deletion;Left=chr6:137355387-137355843;Right=chr6:137355880-137356293
chr6	CG	SV	143290869	143296334	30	.	.	ID=375;Type=probable-inversion;Left=chr6:143290869-143291260-;Right=chr6:143295957-143296334+;Distance=4697;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=;LeftGenes=NM_006734:-;RightGenes=NM_006734:-;XRef=;Frequency=0.00
chr6	CG	SV	143290869	143291260	30	-	.	ID=375;Type=probable-inversion;Left=chr6:143290869-143291260;Right=chr6:143295957-143296334
chr6	CG	SV	143295957	143296334	30	-	.	ID=375;Type=probable-inversion;Left=chr6:143290869-143291260;Right=chr6:143295957-143296334
chr6	CG	SV	153071683	153076104	38	.	.	ID=3148;Type=deletion;Left=chr6:153071683-153071988+;Right=chr6:153075501-153076104+;Distance=3818;DiscordantMatePairAlignments=38;LeftRepeat=L1MEb:LINE:L1;RightRepeat=L1MEb:LINE:L1;LeftGenes=NM_025107:+;RightGenes=NM_025107:+;XRef=;Frequency=1.00
chr6	CG	SV	153071683	153071988	38	+	.	ID=3148;Type=deletion;Left=chr6:153071683-153071988;Right=chr6:153075501-153076104
chr6	CG	SV	153075501	153076104	38	+	.	ID=3148;Type=deletion;Left=chr6:153071683-153071988;Right=chr6:153075501-153076104
chr6	CG	SV	154488622	154489424	12	.	.	ID=3147;Type=deletion;Left=chr6:154488622-154489117+;Right=chr6:154488944-154489424+;Distance=322;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_001008503:+;RightGenes=NM_001008503:+;XRef=rs10525587 (chr6:154488607-154488929);Frequency=1.00
chr6	CG	SV	154488622	154489117	12	+	.	ID=3147;Type=deletion;Left=chr6:154488622-154489117;Right=chr6:154488944-154489424
chr6	CG	SV	154488944	154489424	12	+	.	ID=3147;Type=deletion;Left=chr6:154488622-154489117;Right=chr6:154488944-154489424
chr6	CG	SV	158468258	158469574	149	.	.	ID=3145;Type=deletion;Left=chr6:158468258-158468757+;Right=chr6:158469058-158469574+;Distance=800;DiscordantMatePairAlignments=149;LeftRepeat=;RightRepeat=Tandem A;LeftGenes=NM_032861:-;RightGenes=NM_032861:-;XRef=rs67440464 (chr6:158468254-158469054);Frequency=1.00
chr6	CG	SV	158468258	158468757	149	+	.	ID=3145;Type=deletion;Left=chr6:158468258-158468757;Right=chr6:158469058-158469574
chr6	CG	SV	158469058	158469574	149	+	.	ID=3145;Type=deletion;Left=chr6:158468258-158468757;Right=chr6:158469058-158469574
chr6	CG	SV	159042077	159042592	15	.	.	ID=1428;Type=tandem-duplication;Left=chr6:159042077-159042319-;Right=chr6:159042398-159042592-;Distance=273;DiscordantMatePairAlignments=15;LeftRepeat=(AGGTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 26;RightRepeat=Self chain;LeftGenes=NM_001009991:+;RightGenes=NM_001009991:+;XRef=;Frequency=0.59
chr6	CG	SV	159042077	159042319	15	-	.	ID=1428;Type=tandem-duplication;Left=chr6:159042077-159042319;Right=chr6:159042398-159042592
chr6	CG	SV	159042398	159042592	15	-	.	ID=1428;Type=tandem-duplication;Left=chr6:159042077-159042319;Right=chr6:159042398-159042592
chr6	CG	SV	159046017	159046649	17	.	.	ID=3143;Type=deletion;Left=chr6:159046017-159046444+;Right=chr6:159046429-159046649+;Distance=412;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;Tandem period 51;LeftGenes=NM_001009991:+;RightGenes=NM_001009991:+;XRef=;Frequency=0.24
chr6	CG	SV	159046017	159046444	17	+	.	ID=3143;Type=deletion;Left=chr6:159046017-159046444;Right=chr6:159046429-159046649
chr6	CG	SV	159046429	159046649	17	+	.	ID=3143;Type=deletion;Left=chr6:159046017-159046444;Right=chr6:159046429-159046649
chr6	CG	SV	159586768	159587559	13	.	.	ID=3141;Type=deletion;Left=chr6:159586768-159587234+;Right=chr6:159587091-159587559+;Distance=323;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_032532:+;RightGenes=NM_032532:+;XRef=rs68008895 (chr6:159586768-159587091);Frequency=1.00
chr6	CG	SV	159586768	159587234	13	+	.	ID=3141;Type=deletion;Left=chr6:159586768-159587234;Right=chr6:159587091-159587559
chr6	CG	SV	159587091	159587559	13	+	.	ID=3141;Type=deletion;Left=chr6:159586768-159587234;Right=chr6:159587091-159587559
chr6	CG	SV	160797152	160876609	21	.	.	ID=1426;Type=tandem-duplication;Left=chr6:160797152-160797741-;Right=chr6:160876500-160876609-;Distance=78868;DiscordantMatePairAlignments=21;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 9;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGATGG;Tandem period 9;LeftGenes=;RightGenes=NM_005577:-;XRef=;Frequency=0.94
chr6	CG	SV	160797152	160797741	21	-	.	ID=1426;Type=tandem-duplication;Left=chr6:160797152-160797741;Right=chr6:160876500-160876609
chr6	CG	SV	160876500	160876609	21	-	.	ID=1426;Type=tandem-duplication;Left=chr6:160797152-160797741;Right=chr6:160876500-160876609
chr6	CG	SV	165644657	165652548	35	.	.	ID=3138;Type=deletion;Left=chr6:165644657-165645243+;Right=chr6:165652123-165652548+;Distance=7466;DiscordantMatePairAlignments=35;LeftRepeat=LTR46:LTR:ERV1;RightRepeat=L1PA8:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72196192 (chr6:165644656-165652122);Frequency=0.88
chr6	CG	SV	165644657	165645243	35	+	.	ID=3138;Type=deletion;Left=chr6:165644657-165645243;Right=chr6:165652123-165652548
chr6	CG	SV	165652123	165652548	35	+	.	ID=3138;Type=deletion;Left=chr6:165644657-165645243;Right=chr6:165652123-165652548
chr6	CG	SV	166173136	166173570	15	.	.	ID=1425;Type=tandem-duplication;Left=chr6:166173136-166173290-;Right=chr6:166173283-166173570-;Distance=280;DiscordantMatePairAlignments=15;LeftRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;(CCCCAA)n:Simple_repeat:Simple_repeat;Tandem period 12;Tandem period 18;RightRepeat=C-rich:Low_complexity:Low_complexity;Tandem CATCCC;Tandem period 12;Tandem period 18;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr6	CG	SV	166173136	166173290	15	-	.	ID=1425;Type=tandem-duplication;Left=chr6:166173136-166173290;Right=chr6:166173283-166173570
chr6	CG	SV	166173283	166173570	15	-	.	ID=1425;Type=tandem-duplication;Left=chr6:166173136-166173290;Right=chr6:166173283-166173570
chr6	CG	SV	167408060	167410019	78	.	.	ID=3136;Type=deletion;Left=chr6:167408060-167408610+;Right=chr6:167409566-167410019+;Distance=1506;DiscordantMatePairAlignments=78;LeftRepeat=L1MEe:LINE:L1;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem CTTC;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	167408060	167408610	78	+	.	ID=3136;Type=deletion;Left=chr6:167408060-167408610;Right=chr6:167409566-167410019
chr6	CG	SV	167409566	167410019	78	+	.	ID=3136;Type=deletion;Left=chr6:167408060-167408610;Right=chr6:167409566-167410019
chr6	CG	SV	168459860	168462030	63	.	.	ID=3133;Type=deletion;Left=chr6:168459860-168460162+;Right=chr6:168461691-168462030+;Distance=1831;DiscordantMatePairAlignments=63;LeftRepeat=Self chain;Tandem period 109;RightRepeat=Self chain;Tandem period 109;LeftGenes=NM_214462:-;RightGenes=NM_214462:-;XRef=rs71731358 (chr6:168459767-168461373);Frequency=0.71
chr6	CG	SV	168459860	168460162	63	+	.	ID=3133;Type=deletion;Left=chr6:168459860-168460162;Right=chr6:168461691-168462030
chr6	CG	SV	168461691	168462030	63	+	.	ID=3133;Type=deletion;Left=chr6:168459860-168460162;Right=chr6:168461691-168462030
chr6	CG	SV	169056265	169056416	10	.	.	ID=1419;Type=tandem-duplication;Left=chr6:169056265-169056342-;Right=chr6:169056316-169056416-;Distance=74;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	169056265	169056342	10	-	.	ID=1419;Type=tandem-duplication;Left=chr6:169056265-169056342;Right=chr6:169056316-169056416
chr6	CG	SV	169056316	169056416	10	-	.	ID=1419;Type=tandem-duplication;Left=chr6:169056265-169056342;Right=chr6:169056316-169056416
chr6	CG	SV	169951948	169952849	13	.	.	ID=3131;Type=deletion;Left=chr6:169951948-169952326+;Right=chr6:169952331-169952849+;Distance=383;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.25
chr6	CG	SV	169951948	169952326	13	+	.	ID=3131;Type=deletion;Left=chr6:169951948-169952326;Right=chr6:169952331-169952849
chr6	CG	SV	169952331	169952849	13	+	.	ID=3131;Type=deletion;Left=chr6:169951948-169952326;Right=chr6:169952331-169952849
chr6	CG	SV	170270964	170271323	11	.	.	ID=4442;Type=probable-inversion;Left=chr6:170270964-170271166+;Right=chr6:170271053-170271323-;Distance=359;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem TGCAGA;RightRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem CATCTG;Tandem period 12;Tandem period 18;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	170270964	170271166	11	+	.	ID=4442;Type=probable-inversion;Left=chr6:170270964-170271166;Right=chr6:170271053-170271323
chr6	CG	SV	170271053	170271323	11	+	.	ID=4442;Type=probable-inversion;Left=chr6:170270964-170271166;Right=chr6:170271053-170271323
chr6	CG	SV	170603690	170604047	57	.	.	ID=1418;Type=tandem-duplication;Left=chr6:170603690-170603853-;Right=chr6:170603848-170604047-;Distance=194;DiscordantMatePairAlignments=57;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GT;Tandem GTGAGT;Tandem period 8;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr6	CG	SV	170603690	170603853	57	-	.	ID=1418;Type=tandem-duplication;Left=chr6:170603690-170603853;Right=chr6:170603848-170604047
chr6	CG	SV	170603848	170604047	57	-	.	ID=1418;Type=tandem-duplication;Left=chr6:170603690-170603853;Right=chr6:170603848-170604047
chr7	CG	SV	319254	321312	17	.	.	ID=3130;Type=deletion;Left=chr7:319254-319611+;Right=chr7:321095-321312+;Distance=1841;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem period 119;Tandem period 178;Tandem period 59;RightRepeat=Self chain;Tandem period 119;Tandem period 178;Tandem period 59;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr7	CG	SV	319254	319611	17	+	.	ID=3130;Type=deletion;Left=chr7:319254-319611;Right=chr7:321095-321312
chr7	CG	SV	321095	321312	17	+	.	ID=3130;Type=deletion;Left=chr7:319254-319611;Right=chr7:321095-321312
chr7	CG	SV	572329	572931	24	.	.	ID=1416;Type=tandem-duplication;Left=chr7:572329-572568-;Right=chr7:572600-572931-;Distance=363;DiscordantMatePairAlignments=24;LeftRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;Self chain;Tandem TCA;Tandem period 12;Tandem period 9;RightRepeat=(CAT)n:Simple_repeat:Simple_repeat;Self chain;Tandem TCA;Tandem period 12;Tandem period 15;Tandem period 9;LeftGenes=NM_001164758:-;NM_001164759:-;NM_001164760:-;NM_001164761:-;NM_001164762:-;NM_002735:-;RightGenes=NM_001164758:-;NM_001164759:-;NM_001164760:-;NM_001164761:-;NM_001164762:-;NM_002735:-;XRef=;Frequency=1.00
chr7	CG	SV	572329	572568	24	-	.	ID=1416;Type=tandem-duplication;Left=chr7:572329-572568;Right=chr7:572600-572931
chr7	CG	SV	572600	572931	24	-	.	ID=1416;Type=tandem-duplication;Left=chr7:572329-572568;Right=chr7:572600-572931
chr7	CG	SV	1134012	1135973	21	.	.	ID=3125;Type=deletion;Left=chr7:1134012-1134469+;Right=chr7:1135682-1135973+;Distance=1670;DiscordantMatePairAlignments=21;LeftRepeat=AluSg/x:SINE:Alu;Self chain;Tandem period 46;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_001134395:-;NM_001134396:-;NM_032350:-;RightGenes=NM_001134395:-;NM_001134396:-;NM_032350:-;XRef=;Frequency=0.47
chr7	CG	SV	1134012	1134469	21	+	.	ID=3125;Type=deletion;Left=chr7:1134012-1134469;Right=chr7:1135682-1135973
chr7	CG	SV	1135682	1135973	21	+	.	ID=3125;Type=deletion;Left=chr7:1134012-1134469;Right=chr7:1135682-1135973
chr7	CG	SV	1151596	1154624	55	.	.	ID=3124;Type=deletion;Left=chr7:1151596-1152040+;Right=chr7:1154186-1154624+;Distance=2590;DiscordantMatePairAlignments=55;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71703948 (chr7:1151590-1154180);Frequency=0.94
chr7	CG	SV	1151596	1152040	55	+	.	ID=3124;Type=deletion;Left=chr7:1151596-1152040;Right=chr7:1154186-1154624
chr7	CG	SV	1154186	1154624	55	+	.	ID=3124;Type=deletion;Left=chr7:1151596-1152040;Right=chr7:1154186-1154624
chr7	CG	SV	4047791	4049255	108	.	.	ID=3119;Type=deletion;Left=chr7:4047791-4048219+;Right=chr7:4048823-4049255+;Distance=1032;DiscordantMatePairAlignments=108;LeftRepeat=L1MC1:LINE:L1;RightRepeat=;LeftGenes=NM_152744:+;RightGenes=NM_152744:+;XRef=rs72449159 (chr7:4047790-4048822);Frequency=0.06
chr7	CG	SV	4047791	4048219	108	+	.	ID=3119;Type=deletion;Left=chr7:4047791-4048219;Right=chr7:4048823-4049255
chr7	CG	SV	4048823	4049255	108	+	.	ID=3119;Type=deletion;Left=chr7:4047791-4048219;Right=chr7:4048823-4049255
chr7	CG	SV	4089724	4089947	15	.	.	ID=1415;Type=tandem-duplication;Left=chr7:4089724-4089812-;Right=chr7:4089833-4089947-;Distance=135;DiscordantMatePairAlignments=15;LeftRepeat=CT-rich:Low_complexity:Low_complexity;Tandem period 20;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem period 20;LeftGenes=NM_152744:+;RightGenes=NM_152744:+;XRef=;Frequency=0.15
chr7	CG	SV	4089724	4089812	15	-	.	ID=1415;Type=tandem-duplication;Left=chr7:4089724-4089812;Right=chr7:4089833-4089947
chr7	CG	SV	4089833	4089947	15	-	.	ID=1415;Type=tandem-duplication;Left=chr7:4089724-4089812;Right=chr7:4089833-4089947
chr7	CG	SV	9601175	9603037	29	.	.	ID=3118;Type=deletion;Left=chr7:9601175-9601549+;Right=chr7:9602518-9603037+;Distance=1343;DiscordantMatePairAlignments=29;LeftRepeat=THE1D-int:LTR:MaLR;RightRepeat=THE1D-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs71014005 (chr7:9601175-9602518);Frequency=1.00
chr7	CG	SV	9601175	9601549	29	+	.	ID=3118;Type=deletion;Left=chr7:9601175-9601549;Right=chr7:9602518-9603037
chr7	CG	SV	9602518	9603037	29	+	.	ID=3118;Type=deletion;Left=chr7:9601175-9601549;Right=chr7:9602518-9603037
chr7	CG	SV	16138298	16141195	41	.	.	ID=3115;Type=deletion;Left=chr7:16138298-16138731+;Right=chr7:16140597-16141195+;Distance=2299;DiscordantMatePairAlignments=41;LeftRepeat=MLT1A0-int:LTR:MaLR;RightRepeat=Charlie3:DNA:MER1_type;LeftGenes=NM_001101417:-;NM_001101426:-;RightGenes=NM_001101417:-;NM_001101426:-;XRef=rs67864719 (chr7:16138298-16140597);Frequency=0.71
chr7	CG	SV	16138298	16138731	41	+	.	ID=3115;Type=deletion;Left=chr7:16138298-16138731;Right=chr7:16140597-16141195
chr7	CG	SV	16140597	16141195	41	+	.	ID=3115;Type=deletion;Left=chr7:16138298-16138731;Right=chr7:16140597-16141195
chr7	CG	SV	22401328	22403698	161	.	.	ID=3114;Type=deletion;Left=chr7:22401328-22401843+;Right=chr7:22403288-22403698+;Distance=1960;DiscordantMatePairAlignments=161;LeftRepeat=LOR1a:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71839705 (chr7:22401325-22403285);Frequency=0.71
chr7	CG	SV	22401328	22401843	161	+	.	ID=3114;Type=deletion;Left=chr7:22401328-22401843;Right=chr7:22403288-22403698
chr7	CG	SV	22403288	22403698	161	+	.	ID=3114;Type=deletion;Left=chr7:22401328-22401843;Right=chr7:22403288-22403698
chr7	CG	SV	24004690	24007130	58	.	.	ID=3113;Type=deletion;Left=chr7:24004690-24005107+;Right=chr7:24006599-24007130+;Distance=1909;DiscordantMatePairAlignments=58;LeftRepeat=;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=rs68096632 (chr7:24004686-24006595);Frequency=0.94
chr7	CG	SV	24004690	24005107	58	+	.	ID=3113;Type=deletion;Left=chr7:24004690-24005107;Right=chr7:24006599-24007130
chr7	CG	SV	24006599	24007130	58	+	.	ID=3113;Type=deletion;Left=chr7:24004690-24005107;Right=chr7:24006599-24007130
chr7	CG	SV	24224612	24225289	11	.	.	ID=3112;Type=deletion;Left=chr7:24224612-24224996+;Right=chr7:24225008-24225289+;Distance=396;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr7	CG	SV	24224612	24224996	11	+	.	ID=3112;Type=deletion;Left=chr7:24224612-24224996;Right=chr7:24225008-24225289
chr7	CG	SV	24225008	24225289	11	+	.	ID=3112;Type=deletion;Left=chr7:24224612-24224996;Right=chr7:24225008-24225289
chr7	CG	SV	25023986	25026802	36	.	.	ID=3110;Type=deletion;Left=chr7:25023986-25024363+;Right=chr7:25026395-25026802+;Distance=2409;DiscordantMatePairAlignments=36;LeftRepeat=Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr7	CG	SV	25023986	25024363	36	+	.	ID=3110;Type=deletion;Left=chr7:25023986-25024363;Right=chr7:25026395-25026802
chr7	CG	SV	25026395	25026802	36	+	.	ID=3110;Type=deletion;Left=chr7:25023986-25024363;Right=chr7:25026395-25026802
chr7	CG	SV	28180829	28181689	34	.	.	ID=3109;Type=deletion;Left=chr7:28180829-28181302+;Right=chr7:28181193-28181689+;Distance=364;DiscordantMatePairAlignments=34;LeftRepeat=;RightRepeat=;LeftGenes=NM_175061:-;RightGenes=NM_175061:-;XRef=rs67581067 (chr7:28180829-28181193);Frequency=0.76
chr7	CG	SV	28180829	28181302	34	+	.	ID=3109;Type=deletion;Left=chr7:28180829-28181302;Right=chr7:28181193-28181689
chr7	CG	SV	28181193	28181689	34	+	.	ID=3109;Type=deletion;Left=chr7:28180829-28181302;Right=chr7:28181193-28181689
chr7	CG	SV	28540908	28542062	27	.	.	ID=3108;Type=deletion;Left=chr7:28540908-28541365+;Right=chr7:28541751-28542062+;Distance=843;DiscordantMatePairAlignments=27;LeftRepeat=MIR:SINE:MIR;Self chain;RightRepeat=Self chain;LeftGenes=NM_004904:+;NM_182898:+;NM_182899:+;RightGenes=NM_004904:+;NM_182898:+;NM_182899:+;XRef=;Frequency=0.59
chr7	CG	SV	28540908	28541365	27	+	.	ID=3108;Type=deletion;Left=chr7:28540908-28541365;Right=chr7:28541751-28542062
chr7	CG	SV	28541751	28542062	27	+	.	ID=3108;Type=deletion;Left=chr7:28540908-28541365;Right=chr7:28541751-28542062
chr7	CG	SV	31282268	31286005	31	.	.	ID=3106;Type=deletion;Left=chr7:31282268-31282737+;Right=chr7:31285702-31286005+;Distance=3434;DiscordantMatePairAlignments=31;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr7	CG	SV	31282268	31282737	31	+	.	ID=3106;Type=deletion;Left=chr7:31282268-31282737;Right=chr7:31285702-31286005
chr7	CG	SV	31285702	31286005	31	+	.	ID=3106;Type=deletion;Left=chr7:31282268-31282737;Right=chr7:31285702-31286005
chr7	CG	SV	31553141	31558932	23	.	.	ID=373;Type=complex;Left=chr7:31553141-31553296-;Right=chr7:31558520-31558932+;Distance=5224;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=NM_194300:+;RightGenes=NM_194300:+;XRef=;Frequency=0.59
chr7	CG	SV	31553141	31553296	23	-	.	ID=373;Type=complex;Left=chr7:31553141-31553296;Right=chr7:31558520-31558932
chr7	CG	SV	31558520	31558932	23	-	.	ID=373;Type=complex;Left=chr7:31553141-31553296;Right=chr7:31558520-31558932
chr7	CG	SV	31553554	31556796	76	.	.	ID=4441;Type=complex;Left=chr7:31553554-31553811+;Right=chr7:31556408-31556796-;Distance=3242;DiscordantMatePairAlignments=76;LeftRepeat=Self chain;THE1C:LTR:MaLR;RightRepeat=Self chain;LeftGenes=NM_194300:+;RightGenes=NM_194300:+;XRef=;Frequency=0.59
chr7	CG	SV	31553554	31553811	76	+	.	ID=4441;Type=complex;Left=chr7:31553554-31553811;Right=chr7:31556408-31556796
chr7	CG	SV	31556408	31556796	76	+	.	ID=4441;Type=complex;Left=chr7:31553554-31553811;Right=chr7:31556408-31556796
chr7	CG	SV	31556796	31558731	28	.	.	ID=3105;Type=complex;Left=chr7:31556796-31557084+;Right=chr7:31558520-31558731+;Distance=1724;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=NM_194300:+;RightGenes=NM_194300:+;XRef=;Frequency=0.59
chr7	CG	SV	31556796	31557084	28	+	.	ID=3105;Type=complex;Left=chr7:31556796-31557084;Right=chr7:31558520-31558731
chr7	CG	SV	31558520	31558731	28	+	.	ID=3105;Type=complex;Left=chr7:31556796-31557084;Right=chr7:31558520-31558731
chr7	CG	SV	32356681	32360085	77	.	.	ID=3104;Type=deletion;Left=chr7:32356681-32357194+;Right=chr7:32359642-32360085+;Distance=2961;DiscordantMatePairAlignments=77;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67720953 (chr7:32356676-32359637);Frequency=0.94
chr7	CG	SV	32356681	32357194	77	+	.	ID=3104;Type=deletion;Left=chr7:32356681-32357194;Right=chr7:32359642-32360085
chr7	CG	SV	32359642	32360085	77	+	.	ID=3104;Type=deletion;Left=chr7:32356681-32357194;Right=chr7:32359642-32360085
chr7	CG	SV	33865381	33866136	22	.	.	ID=3102;Type=deletion;Left=chr7:33865381-33865895+;Right=chr7:33865712-33866136+;Distance=331;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66914971 (chr7:33865366-33865697);Frequency=1.00
chr7	CG	SV	33865381	33865895	22	+	.	ID=3102;Type=deletion;Left=chr7:33865381-33865895;Right=chr7:33865712-33866136
chr7	CG	SV	33865712	33866136	22	+	.	ID=3102;Type=deletion;Left=chr7:33865381-33865895;Right=chr7:33865712-33866136
chr7	CG	SV	47674733	47676054	58	.	.	ID=1413;Type=tandem-duplication;Left=chr7:47674733-47675243-;Right=chr7:47675558-47676054-;Distance=811;DiscordantMatePairAlignments=58;LeftRepeat=MLT1B:LTR:MaLR;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr7	CG	SV	47674733	47675243	58	-	.	ID=1413;Type=tandem-duplication;Left=chr7:47674733-47675243;Right=chr7:47675558-47676054
chr7	CG	SV	47675558	47676054	58	-	.	ID=1413;Type=tandem-duplication;Left=chr7:47674733-47675243;Right=chr7:47675558-47676054
chr7	CG	SV	54563980	54565428	43	.	.	ID=3099;Type=deletion;Left=chr7:54563980-54564447+;Right=chr7:54564927-54565428+;Distance=947;DiscordantMatePairAlignments=43;LeftRepeat=L1MC3:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72118222 (chr7:54563980-54564927);Frequency=0.12
chr7	CG	SV	54563980	54564447	43	+	.	ID=3099;Type=deletion;Left=chr7:54563980-54564447;Right=chr7:54564927-54565428
chr7	CG	SV	54564927	54565428	43	+	.	ID=3099;Type=deletion;Left=chr7:54563980-54564447;Right=chr7:54564927-54565428
chr7	CG	SV	55254252	55256970	20	.	.	ID=3098;Type=deletion;Left=chr7:55254252-55254482+;Right=chr7:55256570-55256970+;Distance=2318;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71805120 (chr7:55254237-55256555);Frequency=0.82
chr7	CG	SV	55254252	55254482	20	+	.	ID=3098;Type=deletion;Left=chr7:55254252-55254482;Right=chr7:55256570-55256970
chr7	CG	SV	55256570	55256970	20	+	.	ID=3098;Type=deletion;Left=chr7:55254252-55254482;Right=chr7:55256570-55256970
chr7	CG	SV	63953252	63955905	35	.	.	ID=3089;Type=deletion;Left=chr7:63953252-63953711+;Right=chr7:63955503-63955905+;Distance=2251;DiscordantMatePairAlignments=35;LeftRepeat=Self chain;RightRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;LeftGenes=;RightGenes=;XRef=rs71014041 (chr7:63953259-63955510);Frequency=1.00
chr7	CG	SV	63953252	63953711	35	+	.	ID=3089;Type=deletion;Left=chr7:63953252-63953711;Right=chr7:63955503-63955905
chr7	CG	SV	63955503	63955905	35	+	.	ID=3089;Type=deletion;Left=chr7:63953252-63953711;Right=chr7:63955503-63955905
chr7	CG	SV	65831301	73020312	15	.	.	ID=3084;Type=deletion;Left=chr7:65831301-65831458+;Right=chr7:73020078-73020312+;Distance=7188777;DiscordantMatePairAlignments=15;LeftRepeat=C-rich:Low_complexity:Low_complexity;SegDup;Self chain;Tandem period 12;Tandem period 36;RightRepeat=C-rich:Low_complexity:Low_complexity;SegDup;Self chain;Tandem period 12;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	65831301	65831458	15	+	.	ID=3084;Type=deletion;Left=chr7:65831301-65831458;Right=chr7:73020078-73020312
chr7	CG	SV	73020078	73020312	15	+	.	ID=3084;Type=deletion;Left=chr7:65831301-65831458;Right=chr7:73020078-73020312
chr7	CG	SV	67273208	97920775	35	.	.	ID=4437;Type=probable-inversion;Left=chr7:67273208-67273554+;Right=chr7:97920491-97920775-;Distance=30647567;DiscordantMatePairAlignments=35;LeftRepeat=MER5A:DNA:MER1_type;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	67273208	67273554	35	+	.	ID=4437;Type=probable-inversion;Left=chr7:67273208-67273554;Right=chr7:97920491-97920775
chr7	CG	SV	97920491	97920775	35	+	.	ID=4437;Type=probable-inversion;Left=chr7:67273208-67273554;Right=chr7:97920491-97920775
chr7	CG	SV	70058905	70076821	42	.	.	ID=4440;Type=probable-inversion;Left=chr7:70058905-70059294+;Right=chr7:70076353-70076821-;Distance=17916;DiscordantMatePairAlignments=42;LeftRepeat=MER4C:LTR:ERV1;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr7	CG	SV	70058905	70059294	42	+	.	ID=4440;Type=probable-inversion;Left=chr7:70058905-70059294;Right=chr7:70076353-70076821
chr7	CG	SV	70076353	70076821	42	+	.	ID=4440;Type=probable-inversion;Left=chr7:70058905-70059294;Right=chr7:70076353-70076821
chr7	CG	SV	70849842	70851294	68	.	.	ID=3086;Type=deletion;Left=chr7:70849842-70850330+;Right=chr7:70850899-70851294+;Distance=1057;DiscordantMatePairAlignments=68;LeftRepeat=AluSp:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	70849842	70850330	68	+	.	ID=3086;Type=deletion;Left=chr7:70849842-70850330;Right=chr7:70850899-70851294
chr7	CG	SV	70850899	70851294	68	+	.	ID=3086;Type=deletion;Left=chr7:70849842-70850330;Right=chr7:70850899-70851294
chr7	CG	SV	71283978	71374368	15	.	.	ID=1407;Type=tandem-duplication;Left=chr7:71283978-71284485-;Right=chr7:71374159-71374368-;Distance=89883;DiscordantMatePairAlignments=15;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=FRAM:SINE:Alu;Self chain;LeftGenes=NM_001017440:-;NM_031468:-;RightGenes=NM_001017440:-;NM_031468:-;XRef=;Frequency=0.00
chr7	CG	SV	71283978	71284485	15	-	.	ID=1407;Type=tandem-duplication;Left=chr7:71283978-71284485;Right=chr7:71374159-71374368
chr7	CG	SV	71374159	71374368	15	-	.	ID=1407;Type=tandem-duplication;Left=chr7:71283978-71284485;Right=chr7:71374159-71374368
chr7	CG	SV	81279598	81280768	19	.	.	ID=3077;Type=deletion;Left=chr7:81279598-81280066+;Right=chr7:81280505-81280768+;Distance=907;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr7	CG	SV	81279598	81280066	19	+	.	ID=3077;Type=deletion;Left=chr7:81279598-81280066;Right=chr7:81280505-81280768
chr7	CG	SV	81280505	81280768	19	+	.	ID=3077;Type=deletion;Left=chr7:81279598-81280066;Right=chr7:81280505-81280768
chr7	CG	SV	87929243	87930189	27	.	.	ID=3075;Type=deletion;Left=chr7:87929243-87929790+;Right=chr7:87929693-87930189+;Distance=450;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66468286 (chr7:87929235-87929685);Frequency=1.00
chr7	CG	SV	87929243	87929790	27	+	.	ID=3075;Type=deletion;Left=chr7:87929243-87929790;Right=chr7:87929693-87930189
chr7	CG	SV	87929693	87930189	27	+	.	ID=3075;Type=deletion;Left=chr7:87929243-87929790;Right=chr7:87929693-87930189
chr7	CG	SV	89392108	89392846	12	.	.	ID=3074;Type=deletion;Left=chr7:89392108-89392502+;Right=chr7:89392528-89392846+;Distance=420;DiscordantMatePairAlignments=12;LeftRepeat=GA-rich:Low_complexity:Low_complexity;Tandem period 35;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71014061 (chr7:89392102-89392487);Frequency=1.00
chr7	CG	SV	89392108	89392502	12	+	.	ID=3074;Type=deletion;Left=chr7:89392108-89392502;Right=chr7:89392528-89392846
chr7	CG	SV	89392528	89392846	12	+	.	ID=3074;Type=deletion;Left=chr7:89392108-89392502;Right=chr7:89392528-89392846
chr7	CG	SV	96313837	96320366	77	.	.	ID=3069;Type=deletion;Left=chr7:96313837-96314466+;Right=chr7:96319945-96320366+;Distance=6108;DiscordantMatePairAlignments=77;LeftRepeat=Self chain;T-rich:Low_complexity:Low_complexity;RightRepeat=L1MD2:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71014064 (chr7:96313837-96319945);Frequency=1.00
chr7	CG	SV	96313837	96314466	77	+	.	ID=3069;Type=deletion;Left=chr7:96313837-96314466;Right=chr7:96319945-96320366
chr7	CG	SV	96319945	96320366	77	+	.	ID=3069;Type=deletion;Left=chr7:96313837-96314466;Right=chr7:96319945-96320366
chr7	CG	SV	100388672	100389462	20	.	.	ID=3067;Type=deletion;Left=chr7:100388672-100389418+;Right=chr7:100389182-100389462+;Distance=510;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	100388672	100389418	20	+	.	ID=3067;Type=deletion;Left=chr7:100388672-100389418;Right=chr7:100389182-100389462
chr7	CG	SV	100389182	100389462	20	+	.	ID=3067;Type=deletion;Left=chr7:100388672-100389418;Right=chr7:100389182-100389462
chr7	CG	SV	100787986	100790847	36	.	.	ID=3065;Type=deletion;Left=chr7:100787986-100788428+;Right=chr7:100790532-100790847+;Distance=2546;DiscordantMatePairAlignments=36;LeftRepeat=Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs66862807 (chr7:100787986-100790532);Frequency=0.41
chr7	CG	SV	100787986	100788428	36	+	.	ID=3065;Type=deletion;Left=chr7:100787986-100788428;Right=chr7:100790532-100790847
chr7	CG	SV	100790532	100790847	36	+	.	ID=3065;Type=deletion;Left=chr7:100787986-100788428;Right=chr7:100790532-100790847
chr7	CG	SV	100845922	100847354	60	.	.	ID=3064;Type=deletion;Left=chr7:100845922-100846410+;Right=chr7:100847031-100847354+;Distance=1109;DiscordantMatePairAlignments=60;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_133457:+;RightGenes=NM_133457:+;XRef=;Frequency=0.29
chr7	CG	SV	100845922	100846410	60	+	.	ID=3064;Type=deletion;Left=chr7:100845922-100846410;Right=chr7:100847031-100847354
chr7	CG	SV	100847031	100847354	60	+	.	ID=3064;Type=deletion;Left=chr7:100845922-100846410;Right=chr7:100847031-100847354
chr7	CG	SV	113203409	113209890	88	.	.	ID=3058;Type=deletion;Left=chr7:113203409-113203968+;Right=chr7:113209455-113209890+;Distance=6046;DiscordantMatePairAlignments=88;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66950453 (chr7:113203397-113209443);Frequency=1.00
chr7	CG	SV	113203409	113203968	88	+	.	ID=3058;Type=deletion;Left=chr7:113203409-113203968;Right=chr7:113209455-113209890
chr7	CG	SV	113209455	113209890	88	+	.	ID=3058;Type=deletion;Left=chr7:113203409-113203968;Right=chr7:113209455-113209890
chr7	CG	SV	118131051	118131771	17	.	.	ID=3056;Type=deletion;Left=chr7:118131051-118131524+;Right=chr7:118131406-118131771+;Distance=355;DiscordantMatePairAlignments=17;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=ERVL-E:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=rs72457038 (chr7:118131036-118131391);Frequency=1.00
chr7	CG	SV	118131051	118131524	17	+	.	ID=3056;Type=deletion;Left=chr7:118131051-118131524;Right=chr7:118131406-118131771
chr7	CG	SV	118131406	118131771	17	+	.	ID=3056;Type=deletion;Left=chr7:118131051-118131524;Right=chr7:118131406-118131771
chr7	CG	SV	118618484	118622300	49	.	.	ID=3055;Type=deletion;Left=chr7:118618484-118618891+;Right=chr7:118621990-118622300+;Distance=3506;DiscordantMatePairAlignments=49;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66490609 (chr7:118618495-118621990);Frequency=0.53
chr7	CG	SV	118618484	118618891	49	+	.	ID=3055;Type=deletion;Left=chr7:118618484-118618891;Right=chr7:118621990-118622300
chr7	CG	SV	118621990	118622300	49	+	.	ID=3055;Type=deletion;Left=chr7:118618484-118618891;Right=chr7:118621990-118622300
chr7	CG	SV	125833125	125839003	38	.	.	ID=3030;Type=deletion;Left=chr7:125833125-125833585+;Right=chr7:125838686-125839003+;Distance=5561;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=MLT1J:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs66526160 (chr7:125833122-125838683);Frequency=0.94
chr7	CG	SV	125833125	125833585	38	+	.	ID=3030;Type=deletion;Left=chr7:125833125-125833585;Right=chr7:125838686-125839003
chr7	CG	SV	125838686	125839003	38	+	.	ID=3030;Type=deletion;Left=chr7:125833125-125833585;Right=chr7:125838686-125839003
chr7	CG	SV	132648602	132648851	10	-	.	ID=1137;Type=interchromosomal;Left=chr7:132648602-132648851-;Right=chr19:48238372-48238737-;Distance=;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=L1MCa:LINE:L1;SegDup;Self chain;LeftGenes=NM_001037126:+;NM_021807:+;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	48238372	48238737	10	-	.	ID=1137;Type=interchromosomal;Left=chr7:132648602-132648851-;Right=chr19:48238372-48238737-;Distance=;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=L1MCa:LINE:L1;SegDup;Self chain;LeftGenes=NM_001037126:+;NM_021807:+;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	133435543	133449285	69	.	.	ID=3026;Type=deletion;Left=chr7:133435543-133435875+;Right=chr7:133448872-133449285+;Distance=13329;DiscordantMatePairAlignments=69;LeftRepeat=MLT1C:LTR:MaLR;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr7	CG	SV	133435543	133435875	69	+	.	ID=3026;Type=deletion;Left=chr7:133435543-133435875;Right=chr7:133448872-133449285
chr7	CG	SV	133448872	133449285	69	+	.	ID=3026;Type=deletion;Left=chr7:133435543-133435875;Right=chr7:133448872-133449285
chr7	CG	SV	134000547	134001140	15	.	.	ID=3025;Type=deletion;Left=chr7:134000547-134001017+;Right=chr7:134000970-134001140+;Distance=423;DiscordantMatePairAlignments=15;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001724:+;NM_199186:+;RightGenes=NM_001724:+;NM_199186:+;XRef=;Frequency=0.59
chr7	CG	SV	134000547	134001017	15	+	.	ID=3025;Type=deletion;Left=chr7:134000547-134001017;Right=chr7:134000970-134001140
chr7	CG	SV	134000970	134001140	15	+	.	ID=3025;Type=deletion;Left=chr7:134000547-134001017;Right=chr7:134000970-134001140
chr7	CG	SV	137946996	137948202	18	.	.	ID=3023;Type=deletion;Left=chr7:137946996-137947355+;Right=chr7:137947763-137948202+;Distance=767;DiscordantMatePairAlignments=18;LeftRepeat=L1MA5A:LINE:L1;RightRepeat=;LeftGenes=NM_001139456:-;NM_174959:-;RightGenes=NM_001139456:-;NM_174959:-;XRef=rs72467481 (chr7:137946996-137947763);Frequency=0.82
chr7	CG	SV	137946996	137947355	18	+	.	ID=3023;Type=deletion;Left=chr7:137946996-137947355;Right=chr7:137947763-137948202
chr7	CG	SV	137947763	137948202	18	+	.	ID=3023;Type=deletion;Left=chr7:137946996-137947355;Right=chr7:137947763-137948202
chr7	CG	SV	139827969	139835689	12	.	.	ID=1382;Type=tandem-duplication;Left=chr7:139827969-139828055-;Right=chr7:139835328-139835689-;Distance=7634;DiscordantMatePairAlignments=12;LeftRepeat=LTR49:LTR:ERV1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr7	CG	SV	139827969	139828055	12	-	.	ID=1382;Type=tandem-duplication;Left=chr7:139827969-139828055;Right=chr7:139835328-139835689
chr7	CG	SV	139835328	139835689	12	-	.	ID=1382;Type=tandem-duplication;Left=chr7:139827969-139828055;Right=chr7:139835328-139835689
chr7	CG	SV	141726639	141727496	13	.	.	ID=3017;Type=deletion;Left=chr7:141726639-141727152+;Right=chr7:141726977-141727496+;Distance=338;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71014097 (chr7:141726639-141726977);Frequency=1.00
chr7	CG	SV	141726639	141727152	13	+	.	ID=3017;Type=deletion;Left=chr7:141726639-141727152;Right=chr7:141726977-141727496
chr7	CG	SV	141726977	141727496	13	+	.	ID=3017;Type=deletion;Left=chr7:141726639-141727152;Right=chr7:141726977-141727496
chr7	CG	SV	144547817	144552695	70	.	.	ID=3015;Type=deletion;Left=chr7:144547817-144548293+;Right=chr7:144552334-144552695+;Distance=4517;DiscordantMatePairAlignments=70;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr7	CG	SV	144547817	144548293	70	+	.	ID=3015;Type=deletion;Left=chr7:144547817-144548293;Right=chr7:144552334-144552695
chr7	CG	SV	144552334	144552695	70	+	.	ID=3015;Type=deletion;Left=chr7:144547817-144548293;Right=chr7:144552334-144552695
chr7	CG	SV	144634401	144650370	105	.	.	ID=3014;Type=deletion;Left=chr7:144634401-144634768+;Right=chr7:144649787-144650370+;Distance=15386;DiscordantMatePairAlignments=105;LeftRepeat=;RightRepeat=HERV16:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	144634401	144634768	105	+	.	ID=3014;Type=deletion;Left=chr7:144634401-144634768;Right=chr7:144649787-144650370
chr7	CG	SV	144649787	144650370	105	+	.	ID=3014;Type=deletion;Left=chr7:144634401-144634768;Right=chr7:144649787-144650370
chr7	CG	SV	147703798	147707742	21	.	.	ID=3013;Type=deletion;Left=chr7:147703798-147704183+;Right=chr7:147707258-147707742+;Distance=3460;DiscordantMatePairAlignments=21;LeftRepeat=AluSg1:SINE:Alu;RightRepeat=;LeftGenes=NM_014141:+;RightGenes=NM_014141:+;XRef=rs67994340 (chr7:147703796-147707256);Frequency=1.00
chr7	CG	SV	147703798	147704183	21	+	.	ID=3013;Type=deletion;Left=chr7:147703798-147704183;Right=chr7:147707258-147707742
chr7	CG	SV	147707258	147707742	21	+	.	ID=3013;Type=deletion;Left=chr7:147703798-147704183;Right=chr7:147707258-147707742
chr7	CG	SV	150349957	150350544	14	.	.	ID=3010;Type=deletion;Left=chr7:150349957-150350417+;Right=chr7:150350444-150350544+;Distance=487;DiscordantMatePairAlignments=14;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_173681:-;RightGenes=NM_173681:-;XRef=;Frequency=0.18
chr7	CG	SV	150349957	150350417	14	+	.	ID=3010;Type=deletion;Left=chr7:150349957-150350417;Right=chr7:150350444-150350544
chr7	CG	SV	150350444	150350544	14	+	.	ID=3010;Type=deletion;Left=chr7:150349957-150350417;Right=chr7:150350444-150350544
chr7	CG	SV	151795880	151796679	21	.	.	ID=3009;Type=deletion;Left=chr7:151795880-151796373+;Right=chr7:151796549-151796679+;Distance=669;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	151795880	151796373	21	+	.	ID=3009;Type=deletion;Left=chr7:151795880-151796373;Right=chr7:151796549-151796679
chr7	CG	SV	151796549	151796679	21	+	.	ID=3009;Type=deletion;Left=chr7:151795880-151796373;Right=chr7:151796549-151796679
chr7	CG	SV	151876302	151877487	10	.	.	ID=3008;Type=deletion;Left=chr7:151876302-151876471+;Right=chr7:151877263-151877487+;Distance=961;DiscordantMatePairAlignments=10;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=FLAM_C:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs68013241 (chr7:151876302-151877263);Frequency=0.71
chr7	CG	SV	151876302	151876471	10	+	.	ID=3008;Type=deletion;Left=chr7:151876302-151876471;Right=chr7:151877263-151877487
chr7	CG	SV	151877263	151877487	10	+	.	ID=3008;Type=deletion;Left=chr7:151876302-151876471;Right=chr7:151877263-151877487
chr7	CG	SV	152941071	152942191	37	.	.	ID=3006;Type=deletion;Left=chr7:152941071-152941549+;Right=chr7:152941761-152942191+;Distance=690;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;RightRepeat=L1MC4:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71016803 (chr7:152941071-152941761);Frequency=1.00
chr7	CG	SV	152941071	152941549	37	+	.	ID=3006;Type=deletion;Left=chr7:152941071-152941549;Right=chr7:152941761-152942191
chr7	CG	SV	152941761	152942191	37	+	.	ID=3006;Type=deletion;Left=chr7:152941071-152941549;Right=chr7:152941761-152942191
chr7	CG	SV	153784749	153786347	45	.	.	ID=3005;Type=deletion;Left=chr7:153784749-153785219+;Right=chr7:153786008-153786347+;Distance=1259;DiscordantMatePairAlignments=45;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=;LeftGenes=NM_001039350:+;NM_001936:+;NM_130797:+;RightGenes=NM_001039350:+;NM_001936:+;NM_130797:+;XRef=rs67517515 (chr7:153784744-153786003);Frequency=0.94
chr7	CG	SV	153784749	153785219	45	+	.	ID=3005;Type=deletion;Left=chr7:153784749-153785219;Right=chr7:153786008-153786347
chr7	CG	SV	153786008	153786347	45	+	.	ID=3005;Type=deletion;Left=chr7:153784749-153785219;Right=chr7:153786008-153786347
chr7	CG	SV	154023035	154030970	22	.	.	ID=3004;Type=deletion;Left=chr7:154023035-154023471+;Right=chr7:154030884-154030970+;Distance=7849;DiscordantMatePairAlignments=22;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_001039350:+;NM_001936:+;NM_130797:+;RightGenes=NM_001039350:+;NM_001936:+;NM_130797:+;XRef=rs71016805 (chr7:154022834-154030686);Frequency=0.53
chr7	CG	SV	154023035	154023471	22	+	.	ID=3004;Type=deletion;Left=chr7:154023035-154023471;Right=chr7:154030884-154030970
chr7	CG	SV	154030884	154030970	22	+	.	ID=3004;Type=deletion;Left=chr7:154023035-154023471;Right=chr7:154030884-154030970
chr7	CG	SV	154079670	154080573	14	.	.	ID=3003;Type=deletion;Left=chr7:154079670-154080023+;Right=chr7:154080402-154080573+;Distance=732;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 109;Tandem period 37;RightRepeat=Self chain;LeftGenes=NM_001039350:+;NM_001936:+;NM_130797:+;RightGenes=NM_001039350:+;NM_001936:+;NM_130797:+;XRef=rs72400603 (chr7:154079476-154080208);Frequency=0.76
chr7	CG	SV	154079670	154080023	14	+	.	ID=3003;Type=deletion;Left=chr7:154079670-154080023;Right=chr7:154080402-154080573
chr7	CG	SV	154080402	154080573	14	+	.	ID=3003;Type=deletion;Left=chr7:154079670-154080023;Right=chr7:154080402-154080573
chr7	CG	SV	154507047	154511559	118	.	.	ID=1380;Type=distal-duplication;Left=chr7:154507047-154507485-;Right=chr7:154511065-154511559-;Distance=4074;DiscordantMatePairAlignments=118;LeftRepeat=;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=NM_024012:+;RightGenes=;XRef=;Frequency=0.35
chr7	CG	SV	154507047	154507485	118	-	.	ID=1380;Type=distal-duplication;Left=chr7:154507047-154507485;Right=chr7:154511065-154511559
chr7	CG	SV	154511065	154511559	118	-	.	ID=1380;Type=distal-duplication;Left=chr7:154507047-154507485;Right=chr7:154511065-154511559
chr7	CG	SV	154507932	154512056	58	.	.	ID=3001;Type=distal-duplication;Left=chr7:154507932-154508348+;Right=chr7:154511564-154512056+;Distance=3632;DiscordantMatePairAlignments=58;LeftRepeat=;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=NM_024012:+;RightGenes=;XRef=;Frequency=0.29
chr7	CG	SV	154507932	154508348	58	+	.	ID=3001;Type=distal-duplication;Left=chr7:154507932-154508348;Right=chr7:154511564-154512056
chr7	CG	SV	154511564	154512056	58	+	.	ID=3001;Type=distal-duplication;Left=chr7:154507932-154508348;Right=chr7:154511564-154512056
chr7	CG	SV	157722236	157723753	246	.	.	ID=2997;Type=deletion;Left=chr7:157722236-157722717+;Right=chr7:157723210-157723753+;Distance=974;DiscordantMatePairAlignments=246;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_002847:-;NM_130842:-;NM_130843:-;RightGenes=NM_002847:-;NM_130842:-;NM_130843:-;XRef=rs67815723 (chr7:157722235-157723209);Frequency=0.94
chr7	CG	SV	157722236	157722717	246	+	.	ID=2997;Type=deletion;Left=chr7:157722236-157722717;Right=chr7:157723210-157723753
chr7	CG	SV	157723210	157723753	246	+	.	ID=2997;Type=deletion;Left=chr7:157722236-157722717;Right=chr7:157723210-157723753
chr7	CG	SV	157739405	157740588	115	.	.	ID=2996;Type=deletion;Left=chr7:157739405-157739965+;Right=chr7:157740148-157740588+;Distance=743;DiscordantMatePairAlignments=115;LeftRepeat=Self chain;Tandem period 74;RightRepeat=Self chain;Tandem period 74;LeftGenes=NM_002847:-;NM_130842:-;NM_130843:-;RightGenes=NM_002847:-;NM_130842:-;NM_130843:-;XRef=rs67809280 (chr7:157739419-157740162);Frequency=0.76
chr7	CG	SV	157739405	157739965	115	+	.	ID=2996;Type=deletion;Left=chr7:157739405-157739965;Right=chr7:157740148-157740588
chr7	CG	SV	157740148	157740588	115	+	.	ID=2996;Type=deletion;Left=chr7:157739405-157739965;Right=chr7:157740148-157740588
chr7	CG	SV	158080582	158080775	94	.	.	ID=1378;Type=tandem-duplication;Left=chr7:158080582-158080674-;Right=chr7:158080677-158080775-;Distance=101;DiscordantMatePairAlignments=94;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGG;Tandem period 9;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	158080582	158080674	94	-	.	ID=1378;Type=tandem-duplication;Left=chr7:158080582-158080674;Right=chr7:158080677-158080775
chr7	CG	SV	158080677	158080775	94	-	.	ID=1378;Type=tandem-duplication;Left=chr7:158080582-158080674;Right=chr7:158080677-158080775
chr7	CG	SV	158691753	158692831	19	.	.	ID=2993;Type=deletion;Left=chr7:158691753-158692077+;Right=chr7:158692614-158692831+;Distance=861;DiscordantMatePairAlignments=19;LeftRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;Tandem period 32;Tandem period 61;RightRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;Tandem period 32;Tandem period 61;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr7	CG	SV	158691753	158692077	19	+	.	ID=2993;Type=deletion;Left=chr7:158691753-158692077;Right=chr7:158692614-158692831
chr7	CG	SV	158692614	158692831	19	+	.	ID=2993;Type=deletion;Left=chr7:158691753-158692077;Right=chr7:158692614-158692831
chr7	CG	SV	158802673	158817786	42	.	.	ID=2992;Type=deletion;Left=chr7:158802673-158803094+;Right=chr7:158817343-158817786+;Distance=14670;DiscordantMatePairAlignments=42;LeftRepeat=MER57A:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr7	CG	SV	158802673	158803094	42	+	.	ID=2992;Type=deletion;Left=chr7:158802673-158803094;Right=chr7:158817343-158817786
chr7	CG	SV	158817343	158817786	42	+	.	ID=2992;Type=deletion;Left=chr7:158802673-158803094;Right=chr7:158817343-158817786
chr8	CG	SV	584397	589957	158	.	.	ID=2991;Type=deletion;Left=chr8:584397-584871+;Right=chr8:589414-589957+;Distance=5017;DiscordantMatePairAlignments=158;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66630184 (chr8:584400-589414);Frequency=0.88
chr8	CG	SV	584397	584871	158	+	.	ID=2991;Type=deletion;Left=chr8:584397-584871;Right=chr8:589414-589957
chr8	CG	SV	589414	589957	158	+	.	ID=2991;Type=deletion;Left=chr8:584397-584871;Right=chr8:589414-589957
chr8	CG	SV	951161	955284	14	.	.	ID=2990;Type=deletion;Left=chr8:951161-951519+;Right=chr8:955049-955284+;Distance=3888;DiscordantMatePairAlignments=14;LeftRepeat=SegDup;Self chain;Tandem period 33;Tandem period 64;Tandem period 97;RightRepeat=Self chain;Tandem period 33;Tandem period 64;Tandem period 97;LeftGenes=;RightGenes=;XRef=rs71855433 (chr8:950994-954851);Frequency=0.35
chr8	CG	SV	951161	951519	14	+	.	ID=2990;Type=deletion;Left=chr8:951161-951519;Right=chr8:955049-955284
chr8	CG	SV	955049	955284	14	+	.	ID=2990;Type=deletion;Left=chr8:951161-951519;Right=chr8:955049-955284
chr8	CG	SV	1101379	1101738	27	.	.	ID=1375;Type=tandem-duplication;Left=chr8:1101379-1101554-;Right=chr8:1101616-1101738-;Distance=184;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;Tandem period 45;RightRepeat=Self chain;Tandem period 45;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr8	CG	SV	1101379	1101554	27	-	.	ID=1375;Type=tandem-duplication;Left=chr8:1101379-1101554;Right=chr8:1101616-1101738
chr8	CG	SV	1101616	1101738	27	-	.	ID=1375;Type=tandem-duplication;Left=chr8:1101379-1101554;Right=chr8:1101616-1101738
chr8	CG	SV	1733864	1734791	198	.	.	ID=2986;Type=deletion;Left=chr8:1733864-1734428+;Right=chr8:1734345-1734791+;Distance=481;DiscordantMatePairAlignments=198;LeftRepeat=Self chain;Tandem period 37;RightRepeat=Self chain;Tandem period 37;LeftGenes=;RightGenes=;XRef=rs71843993 (chr8:1733872-1734353);Frequency=0.88
chr8	CG	SV	1733864	1734428	198	+	.	ID=2986;Type=deletion;Left=chr8:1733864-1734428;Right=chr8:1734345-1734791
chr8	CG	SV	1734345	1734791	198	+	.	ID=2986;Type=deletion;Left=chr8:1733864-1734428;Right=chr8:1734345-1734791
chr8	CG	SV	1779810	1780038	38	.	.	ID=1374;Type=tandem-duplication;Left=chr8:1779810-1779913-;Right=chr8:1779930-1780038-;Distance=125;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;Tandem period 43;RightRepeat=Self chain;LeftGenes=NM_014629:+;RightGenes=NM_014629:+;XRef=;Frequency=0.94
chr8	CG	SV	1779810	1779913	38	-	.	ID=1374;Type=tandem-duplication;Left=chr8:1779810-1779913;Right=chr8:1779930-1780038
chr8	CG	SV	1779930	1780038	38	-	.	ID=1374;Type=tandem-duplication;Left=chr8:1779810-1779913;Right=chr8:1779930-1780038
chr8	CG	SV	2166339	2167126	13	.	.	ID=2985;Type=deletion;Left=chr8:2166339-2166833+;Right=chr8:2166662-2167126+;Distance=323;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71981345 (chr8:2166329-2166652);Frequency=0.12
chr8	CG	SV	2166339	2166833	13	+	.	ID=2985;Type=deletion;Left=chr8:2166339-2166833;Right=chr8:2166662-2167126
chr8	CG	SV	2166662	2167126	13	+	.	ID=2985;Type=deletion;Left=chr8:2166339-2166833;Right=chr8:2166662-2167126
chr8	CG	SV	2202865	2203900	36	.	.	ID=2984;Type=deletion;Left=chr8:2202865-2203356+;Right=chr8:2203561-2203900+;Distance=696;DiscordantMatePairAlignments=36;LeftRepeat=Self chain;Tandem period 87;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	2202865	2203356	36	+	.	ID=2984;Type=deletion;Left=chr8:2202865-2203356;Right=chr8:2203561-2203900
chr8	CG	SV	2203561	2203900	36	+	.	ID=2984;Type=deletion;Left=chr8:2202865-2203356;Right=chr8:2203561-2203900
chr8	CG	SV	8423460	8424628	20	.	.	ID=2981;Type=deletion;Left=chr8:8423460-8423953+;Right=chr8:8424374-8424628+;Distance=914;DiscordantMatePairAlignments=20;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=FRAM:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72459952 (chr8:8423440-8424354);Frequency=0.82
chr8	CG	SV	8423460	8423953	20	+	.	ID=2981;Type=deletion;Left=chr8:8423460-8423953;Right=chr8:8424374-8424628
chr8	CG	SV	8424374	8424628	20	+	.	ID=2981;Type=deletion;Left=chr8:8423460-8423953;Right=chr8:8424374-8424628
chr8	CG	SV	8764151	8766562	68	.	.	ID=2980;Type=deletion;Left=chr8:8764151-8764652+;Right=chr8:8766092-8766562+;Distance=1941;DiscordantMatePairAlignments=68;LeftRepeat=Self chain;RightRepeat=MIRb:SINE:MIR;Self chain;LeftGenes=NM_004225:-;RightGenes=NM_004225:-;XRef=;Frequency=0.00
chr8	CG	SV	8764151	8764652	68	+	.	ID=2980;Type=deletion;Left=chr8:8764151-8764652;Right=chr8:8766092-8766562
chr8	CG	SV	8766092	8766562	68	+	.	ID=2980;Type=deletion;Left=chr8:8764151-8764652;Right=chr8:8766092-8766562
chr8	CG	SV	11282971	11285125	58	.	.	ID=2978;Type=deletion;Left=chr8:11282971-11283400+;Right=chr8:11284620-11285125+;Distance=1649;DiscordantMatePairAlignments=58;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_026814:+;RightGenes=NR_026814:+;XRef=;Frequency=0.82
chr8	CG	SV	11282971	11283400	58	+	.	ID=2978;Type=deletion;Left=chr8:11282971-11283400;Right=chr8:11284620-11285125
chr8	CG	SV	11284620	11285125	58	+	.	ID=2978;Type=deletion;Left=chr8:11282971-11283400;Right=chr8:11284620-11285125
chr8	CG	SV	16866251	16867195	23	.	.	ID=2975;Type=deletion;Left=chr8:16866251-16866781+;Right=chr8:16866621-16867195+;Distance=370;DiscordantMatePairAlignments=23;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=ERVL-B4:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs10526511 (chr8:16866250-16866620);Frequency=0.59
chr8	CG	SV	16866251	16866781	23	+	.	ID=2975;Type=deletion;Left=chr8:16866251-16866781;Right=chr8:16866621-16867195
chr8	CG	SV	16866621	16867195	23	+	.	ID=2975;Type=deletion;Left=chr8:16866251-16866781;Right=chr8:16866621-16867195
chr8	CG	SV	18498900	18500653	80	.	.	ID=2973;Type=deletion;Left=chr8:18498900-18499352+;Right=chr8:18500233-18500653+;Distance=1333;DiscordantMatePairAlignments=80;LeftRepeat=L1HS:LINE:L1;L1M3:LINE:L1;RightRepeat=L1M3:LINE:L1;LeftGenes=NM_015310:-;NM_206909:-;RightGenes=NM_015310:-;NM_206909:-;XRef=rs71189488 (chr8:18498900-18500233);Frequency=1.00
chr8	CG	SV	18498900	18499352	80	+	.	ID=2973;Type=deletion;Left=chr8:18498900-18499352;Right=chr8:18500233-18500653
chr8	CG	SV	18500233	18500653	80	+	.	ID=2973;Type=deletion;Left=chr8:18498900-18499352;Right=chr8:18500233-18500653
chr8	CG	SV	18695738	18697202	115	.	.	ID=2972;Type=deletion;Left=chr8:18695738-18696179+;Right=chr8:18696712-18697202+;Distance=974;DiscordantMatePairAlignments=115;LeftRepeat=LTR5_Hs:LTR:ERVK;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=NM_015310:-;NM_206909:-;RightGenes=NM_015310:-;NM_206909:-;XRef=rs67390803 (chr8:18695731-18696705);Frequency=1.00
chr8	CG	SV	18695738	18696179	115	+	.	ID=2972;Type=deletion;Left=chr8:18695738-18696179;Right=chr8:18696712-18697202
chr8	CG	SV	18696712	18697202	115	+	.	ID=2972;Type=deletion;Left=chr8:18695738-18696179;Right=chr8:18696712-18697202
chr8	CG	SV	20987684	20988279	22	.	.	ID=2971;Type=deletion;Left=chr8:20987684-20988205+;Right=chr8:20988087-20988279+;Distance=403;DiscordantMatePairAlignments=22;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr8	CG	SV	20987684	20988205	22	+	.	ID=2971;Type=deletion;Left=chr8:20987684-20988205;Right=chr8:20988087-20988279
chr8	CG	SV	20988087	20988279	22	+	.	ID=2971;Type=deletion;Left=chr8:20987684-20988205;Right=chr8:20988087-20988279
chr8	CG	SV	25122602	25127092	152	.	.	ID=2970;Type=deletion;Left=chr8:25122602-25123042+;Right=chr8:25126576-25127092+;Distance=3974;DiscordantMatePairAlignments=152;LeftRepeat=;RightRepeat=;LeftGenes=NM_024940:+;RightGenes=NM_024940:+;XRef=rs71640594 (chr8:25122595-25126569);Frequency=1.00
chr8	CG	SV	25122602	25123042	152	+	.	ID=2970;Type=deletion;Left=chr8:25122602-25123042;Right=chr8:25126576-25127092
chr8	CG	SV	25126576	25127092	152	+	.	ID=2970;Type=deletion;Left=chr8:25122602-25123042;Right=chr8:25126576-25127092
chr8	CG	SV	32799551	32811329	89	.	.	ID=2967;Type=deletion;Left=chr8:32799551-32799974+;Right=chr8:32810807-32811329+;Distance=11256;DiscordantMatePairAlignments=89;LeftRepeat=MLT1I:LTR:MaLR;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	32799551	32799974	89	+	.	ID=2967;Type=deletion;Left=chr8:32799551-32799974;Right=chr8:32810807-32811329
chr8	CG	SV	32810807	32811329	89	+	.	ID=2967;Type=deletion;Left=chr8:32799551-32799974;Right=chr8:32810807-32811329
chr8	CG	SV	37170038	37171504	133	.	.	ID=2966;Type=deletion;Left=chr8:37170038-37170436+;Right=chr8:37171012-37171504+;Distance=974;DiscordantMatePairAlignments=133;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67176554 (chr8:37170037-37171011);Frequency=1.00
chr8	CG	SV	37170038	37170436	133	+	.	ID=2966;Type=deletion;Left=chr8:37170038-37170436;Right=chr8:37171012-37171504
chr8	CG	SV	37171012	37171504	133	+	.	ID=2966;Type=deletion;Left=chr8:37170038-37170436;Right=chr8:37171012-37171504
chr8	CG	SV	42309648	42313837	24	.	.	ID=2963;Type=deletion;Left=chr8:42309648-42310347+;Right=chr8:42313611-42313837+;Distance=3963;DiscordantMatePairAlignments=24;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71199212 (chr8:42309596-42313559);Frequency=1.00
chr8	CG	SV	42309648	42310347	24	+	.	ID=2963;Type=deletion;Left=chr8:42309648-42310347;Right=chr8:42313611-42313837
chr8	CG	SV	42313611	42313837	24	+	.	ID=2963;Type=deletion;Left=chr8:42309648-42310347;Right=chr8:42313611-42313837
chr8	CG	SV	47636565	87780126	24	.	.	ID=346;Type=probable-inversion;Left=chr8:47636565-47636898-;Right=chr8:87779755-87780126+;Distance=40142857;DiscordantMatePairAlignments=24;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_019098:-;XRef=;Frequency=0.59
chr8	CG	SV	47636565	47636898	24	-	.	ID=346;Type=probable-inversion;Left=chr8:47636565-47636898;Right=chr8:87779755-87780126
chr8	CG	SV	87779755	87780126	24	-	.	ID=346;Type=probable-inversion;Left=chr8:47636565-47636898;Right=chr8:87779755-87780126
chr8	CG	SV	55134416	55135243	12	.	.	ID=2955;Type=deletion;Left=chr8:55134416-55134881+;Right=chr8:55134730-55135243+;Distance=314;DiscordantMatePairAlignments=12;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_006330:-;RightGenes=NM_006330:-;XRef=rs71976000 (chr8:55134416-55134730);Frequency=0.35
chr8	CG	SV	55134416	55134881	12	+	.	ID=2955;Type=deletion;Left=chr8:55134416-55134881;Right=chr8:55134730-55135243
chr8	CG	SV	55134730	55135243	12	+	.	ID=2955;Type=deletion;Left=chr8:55134416-55134881;Right=chr8:55134730-55135243
chr8	CG	SV	58278419	58285598	91	.	.	ID=1369;Type=complex;Left=chr8:58278419-58278874-;Right=chr8:58285068-58285598-;Distance=6724;DiscordantMatePairAlignments=91;LeftRepeat=MER50:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58278419	58278874	91	-	.	ID=1369;Type=complex;Left=chr8:58278419-58278874;Right=chr8:58285068-58285598
chr8	CG	SV	58285068	58285598	91	-	.	ID=1369;Type=complex;Left=chr8:58278419-58278874;Right=chr8:58285068-58285598
chr8	CG	SV	58279441	58281259	75	.	.	ID=2954;Type=complex;Left=chr8:58279441-58279915+;Right=chr8:58280822-58281259+;Distance=1381;DiscordantMatePairAlignments=75;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58279441	58279915	75	+	.	ID=2954;Type=complex;Left=chr8:58279441-58279915;Right=chr8:58280822-58281259
chr8	CG	SV	58280822	58281259	75	+	.	ID=2954;Type=complex;Left=chr8:58279441-58279915;Right=chr8:58280822-58281259
chr8	CG	SV	58280280	58290572	113	.	.	ID=1368;Type=complex;Left=chr8:58280280-58280822-;Right=chr8:58290114-58290572-;Distance=9750;DiscordantMatePairAlignments=113;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58280280	58280822	113	-	.	ID=1368;Type=complex;Left=chr8:58280280-58280822;Right=chr8:58290114-58290572
chr8	CG	SV	58290114	58290572	113	-	.	ID=1368;Type=complex;Left=chr8:58280280-58280822;Right=chr8:58290114-58290572
chr8	CG	SV	58285605	58290480	348	.	.	ID=2953;Type=complex;Left=chr8:58285605-58286339+;Right=chr8:58289986-58290480+;Distance=4381;DiscordantMatePairAlignments=348;LeftRepeat=Self chain;RightRepeat=MER50:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58285605	58286339	348	+	.	ID=2953;Type=complex;Left=chr8:58285605-58286339;Right=chr8:58289986-58290480
chr8	CG	SV	58289986	58290480	348	+	.	ID=2953;Type=complex;Left=chr8:58285605-58286339;Right=chr8:58289986-58290480
chr8	CG	SV	58334554	58335451	39	.	.	ID=1366;Type=tandem-duplication;Left=chr8:58334554-58334981-;Right=chr8:58334981-58335451-;Distance=470;DiscordantMatePairAlignments=39;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr8	CG	SV	58334554	58334981	39	-	.	ID=1366;Type=tandem-duplication;Left=chr8:58334554-58334981;Right=chr8:58334981-58335451
chr8	CG	SV	58334981	58335451	39	-	.	ID=1366;Type=tandem-duplication;Left=chr8:58334554-58334981;Right=chr8:58334981-58335451
chr8	CG	SV	59241018	59241870	21	.	.	ID=2951;Type=deletion;Left=chr8:59241018-59241509+;Right=chr8:59241354-59241870+;Distance=336;DiscordantMatePairAlignments=21;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67578537 (chr8:59241006-59241342);Frequency=1.00
chr8	CG	SV	59241018	59241509	21	+	.	ID=2951;Type=deletion;Left=chr8:59241018-59241509;Right=chr8:59241354-59241870
chr8	CG	SV	59241354	59241870	21	+	.	ID=2951;Type=deletion;Left=chr8:59241018-59241509;Right=chr8:59241354-59241870
chr8	CG	SV	61367551	61368324	13	.	.	ID=2950;Type=deletion;Left=chr8:61367551-61368120+;Right=chr8:61367868-61368324+;Distance=317;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs33938822 (chr8:61367551-61367868);Frequency=0.76
chr8	CG	SV	61367551	61368120	13	+	.	ID=2950;Type=deletion;Left=chr8:61367551-61368120;Right=chr8:61367868-61368324
chr8	CG	SV	61367868	61368324	13	+	.	ID=2950;Type=deletion;Left=chr8:61367551-61368120;Right=chr8:61367868-61368324
chr8	CG	SV	62197914	62198895	62	.	.	ID=2949;Type=deletion;Left=chr8:62197914-62198344+;Right=chr8:62198446-62198895+;Distance=532;DiscordantMatePairAlignments=62;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr8	CG	SV	62197914	62198344	62	+	.	ID=2949;Type=deletion;Left=chr8:62197914-62198344;Right=chr8:62198446-62198895
chr8	CG	SV	62198446	62198895	62	+	.	ID=2949;Type=deletion;Left=chr8:62197914-62198344;Right=chr8:62198446-62198895
chr8	CG	SV	72713972	72714821	10	.	.	ID=2945;Type=deletion;Left=chr8:72713972-72714431+;Right=chr8:72714306-72714821+;Distance=334;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67424486 (chr8:72713972-72714306);Frequency=0.94
chr8	CG	SV	72713972	72714431	10	+	.	ID=2945;Type=deletion;Left=chr8:72713972-72714431;Right=chr8:72714306-72714821
chr8	CG	SV	72714306	72714821	10	+	.	ID=2945;Type=deletion;Left=chr8:72713972-72714431;Right=chr8:72714306-72714821
chr8	CG	SV	73950328	73956794	118	.	.	ID=2944;Type=deletion;Left=chr8:73950328-73950799+;Right=chr8:73956386-73956794+;Distance=6058;DiscordantMatePairAlignments=118;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_004770:+;RightGenes=NM_004770:+;XRef=rs71640573 (chr8:73950319-73956377);Frequency=1.00
chr8	CG	SV	73950328	73950799	118	+	.	ID=2944;Type=deletion;Left=chr8:73950328-73950799;Right=chr8:73956386-73956794
chr8	CG	SV	73956386	73956794	118	+	.	ID=2944;Type=deletion;Left=chr8:73950328-73950799;Right=chr8:73956386-73956794
chr8	CG	SV	77499940	77501465	93	.	.	ID=2942;Type=deletion;Left=chr8:77499940-77500405+;Right=chr8:77500985-77501465+;Distance=1045;DiscordantMatePairAlignments=93;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66858940 (chr8:77499940-77500985);Frequency=0.94
chr8	CG	SV	77499940	77500405	93	+	.	ID=2942;Type=deletion;Left=chr8:77499940-77500405;Right=chr8:77500985-77501465
chr8	CG	SV	77500985	77501465	93	+	.	ID=2942;Type=deletion;Left=chr8:77499940-77500405;Right=chr8:77500985-77501465
chr8	CG	SV	82208801	82209601	10	.	.	ID=2941;Type=deletion;Left=chr8:82208801-82209226+;Right=chr8:82209221-82209601+;Distance=420;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 42;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr8	CG	SV	82208801	82209226	10	+	.	ID=2941;Type=deletion;Left=chr8:82208801-82209226;Right=chr8:82209221-82209601
chr8	CG	SV	82209221	82209601	10	+	.	ID=2941;Type=deletion;Left=chr8:82208801-82209226;Right=chr8:82209221-82209601
chr8	CG	SV	90909091	90914794	39	.	.	ID=4409;Type=complex;Left=chr8:90909091-90909413+;Right=chr8:90914421-90914794-;Distance=5703;DiscordantMatePairAlignments=39;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	90909091	90909413	39	+	.	ID=4409;Type=complex;Left=chr8:90909091-90909413;Right=chr8:90914421-90914794
chr8	CG	SV	90914421	90914794	39	+	.	ID=4409;Type=complex;Left=chr8:90909091-90909413;Right=chr8:90914421-90914794
chr8	CG	SV	90914794	91965148	18	.	.	ID=2939;Type=complex;Left=chr8:90914794-90915173+;Right=chr8:91965062-91965148+;Distance=1050268;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_022351:+;XRef=;Frequency=0.00
chr8	CG	SV	90914794	90915173	18	+	.	ID=2939;Type=complex;Left=chr8:90914794-90915173;Right=chr8:91965062-91965148
chr8	CG	SV	91965062	91965148	18	+	.	ID=2939;Type=complex;Left=chr8:90914794-90915173;Right=chr8:91965062-91965148
chr8	CG	SV	94209883	94212275	85	.	.	ID=2937;Type=complex;Left=chr8:94209883-94210339+;Right=chr8:94211891-94212275+;Distance=2008;DiscordantMatePairAlignments=85;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	94209883	94210339	85	+	.	ID=2937;Type=complex;Left=chr8:94209883-94210339;Right=chr8:94211891-94212275
chr8	CG	SV	94211891	94212275	85	+	.	ID=2937;Type=complex;Left=chr8:94209883-94210339;Right=chr8:94211891-94212275
chr8	CG	SV	94211774	94212776	62	.	.	ID=4407;Type=complex;Left=chr8:94211774-94212305+;Right=chr8:94212346-94212776-;Distance=1002;DiscordantMatePairAlignments=62;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	94211774	94212305	62	+	.	ID=4407;Type=complex;Left=chr8:94211774-94212305;Right=chr8:94212346-94212776
chr8	CG	SV	94212346	94212776	62	+	.	ID=4407;Type=complex;Left=chr8:94211774-94212305;Right=chr8:94212346-94212776
chr8	CG	SV	97167264	97168195	44	.	.	ID=2935;Type=deletion;Left=chr8:97167264-97167796+;Right=chr8:97167616-97168195+;Distance=352;DiscordantMatePairAlignments=44;LeftRepeat=AluY:SINE:Alu;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs72382436 (chr8:97167249-97167601);Frequency=1.00
chr8	CG	SV	97167264	97167796	44	+	.	ID=2935;Type=deletion;Left=chr8:97167264-97167796;Right=chr8:97167616-97168195
chr8	CG	SV	97167616	97168195	44	+	.	ID=2935;Type=deletion;Left=chr8:97167264-97167796;Right=chr8:97167616-97168195
chr8	CG	SV	103504677	103505169	12	.	.	ID=4406;Type=probable-inversion;Left=chr8:103504677-103505027+;Right=chr8:103504916-103505169-;Distance=492;DiscordantMatePairAlignments=12;LeftRepeat=AluSp:SINE:Alu;Self chain;RightRepeat=AluSp/q:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr8	CG	SV	103504677	103505027	12	+	.	ID=4406;Type=probable-inversion;Left=chr8:103504677-103505027;Right=chr8:103504916-103505169
chr8	CG	SV	103504916	103505169	12	+	.	ID=4406;Type=probable-inversion;Left=chr8:103504677-103505027;Right=chr8:103504916-103505169
chr8	CG	SV	112363228	112366727	50	.	.	ID=2927;Type=deletion;Left=chr8:112363228-112363631+;Right=chr8:112366316-112366727+;Distance=3088;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=MLT-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67753424 (chr8:112363228-112366316);Frequency=0.88
chr8	CG	SV	112363228	112363631	50	+	.	ID=2927;Type=deletion;Left=chr8:112363228-112363631;Right=chr8:112366316-112366727
chr8	CG	SV	112366316	112366727	50	+	.	ID=2927;Type=deletion;Left=chr8:112363228-112363631;Right=chr8:112366316-112366727
chr8	CG	SV	113154612	113155544	16	.	.	ID=2926;Type=deletion;Left=chr8:113154612-113155037+;Right=chr8:113154942-113155544+;Distance=330;DiscordantMatePairAlignments=16;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=L1M2:LINE:L1;LeftGenes=;RightGenes=;XRef=rs6150764 (chr8:113154612-113154942);Frequency=1.00
chr8	CG	SV	113154612	113155037	16	+	.	ID=2926;Type=deletion;Left=chr8:113154612-113155037;Right=chr8:113154942-113155544
chr8	CG	SV	113154942	113155544	16	+	.	ID=2926;Type=deletion;Left=chr8:113154612-113155037;Right=chr8:113154942-113155544
chr8	CG	SV	126664307	126670907	206	.	.	ID=2918;Type=deletion;Left=chr8:126664307-126664786+;Right=chr8:126670320-126670907+;Distance=6013;DiscordantMatePairAlignments=206;LeftRepeat=;RightRepeat=MER113:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs67543822 (chr8:126664303-126670316);Frequency=1.00
chr8	CG	SV	126664307	126664786	206	+	.	ID=2918;Type=deletion;Left=chr8:126664307-126664786;Right=chr8:126670320-126670907
chr8	CG	SV	126670320	126670907	206	+	.	ID=2918;Type=deletion;Left=chr8:126664307-126664786;Right=chr8:126670320-126670907
chr8	CG	SV	127261392	127264237	53	.	.	ID=2917;Type=deletion;Left=chr8:127261392-127261978+;Right=chr8:127263756-127264237+;Distance=2364;DiscordantMatePairAlignments=53;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72273669 (chr8:127261387-127263752);Frequency=0.59
chr8	CG	SV	127261392	127261978	53	+	.	ID=2917;Type=deletion;Left=chr8:127261392-127261978;Right=chr8:127263756-127264237
chr8	CG	SV	127263756	127264237	53	+	.	ID=2917;Type=deletion;Left=chr8:127261392-127261978;Right=chr8:127263756-127264237
chr8	CG	SV	129534342	129540953	120	.	.	ID=2916;Type=deletion;Left=chr8:129534342-129534848+;Right=chr8:129540455-129540953+;Distance=6113;DiscordantMatePairAlignments=120;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67264625 (chr8:129534335-129540448);Frequency=1.00
chr8	CG	SV	129534342	129534848	120	+	.	ID=2916;Type=deletion;Left=chr8:129534342-129534848;Right=chr8:129540455-129540953
chr8	CG	SV	129540455	129540953	120	+	.	ID=2916;Type=deletion;Left=chr8:129534342-129534848;Right=chr8:129540455-129540953
chr8	CG	SV	136784699	136787585	93	.	.	ID=1365;Type=tandem-duplication;Left=chr8:136784699-136785168-;Right=chr8:136787120-136787585-;Distance=2417;DiscordantMatePairAlignments=93;LeftRepeat=L1MEd:LINE:L1;RightRepeat=MLT2E:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	136784699	136785168	93	-	.	ID=1365;Type=tandem-duplication;Left=chr8:136784699-136785168;Right=chr8:136787120-136787585
chr8	CG	SV	136787120	136787585	93	-	.	ID=1365;Type=tandem-duplication;Left=chr8:136784699-136785168;Right=chr8:136787120-136787585
chr8	CG	SV	138812149	138813564	105	.	.	ID=2914;Type=deletion;Left=chr8:138812149-138812660+;Right=chr8:138813045-138813564+;Distance=896;DiscordantMatePairAlignments=105;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67866144 (chr8:138812147-138813043);Frequency=1.00
chr8	CG	SV	138812149	138812660	105	+	.	ID=2914;Type=deletion;Left=chr8:138812149-138812660;Right=chr8:138813045-138813564
chr8	CG	SV	138813045	138813564	105	+	.	ID=2914;Type=deletion;Left=chr8:138812149-138812660;Right=chr8:138813045-138813564
chr8	CG	SV	143395366	143396962	76	.	.	ID=2912;Type=deletion;Left=chr8:143395366-143395813+;Right=chr8:143396600-143396962+;Distance=1234;DiscordantMatePairAlignments=76;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 36;Tandem period 72;LeftGenes=NM_145003:-;RightGenes=NM_145003:-;XRef=;Frequency=0.00
chr8	CG	SV	143395366	143395813	76	+	.	ID=2912;Type=deletion;Left=chr8:143395366-143395813;Right=chr8:143396600-143396962
chr8	CG	SV	143396600	143396962	76	+	.	ID=2912;Type=deletion;Left=chr8:143395366-143395813;Right=chr8:143396600-143396962
chr8	CG	SV	144127967	144128637	20	.	.	ID=2911;Type=deletion;Left=chr8:144127967-144128304+;Right=chr8:144128540-144128637+;Distance=573;DiscordantMatePairAlignments=20;LeftRepeat=(CAGGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 15;Tandem period 31;Tandem period 46;RightRepeat=Self chain;Tandem period 15;Tandem period 31;Tandem period 46;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr8	CG	SV	144127967	144128304	20	+	.	ID=2911;Type=deletion;Left=chr8:144127967-144128304;Right=chr8:144128540-144128637
chr8	CG	SV	144128540	144128637	20	+	.	ID=2911;Type=deletion;Left=chr8:144127967-144128304;Right=chr8:144128540-144128637
chr8	CG	SV	146027877	146029018	15	.	.	ID=2909;Type=deletion;Left=chr8:146027877-146028291+;Right=chr8:146028688-146029018+;Distance=811;DiscordantMatePairAlignments=15;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_003416:+;RightGenes=NM_003416:+;XRef=rs71976446 (chr8:146027825-146028636);Frequency=0.82
chr8	CG	SV	146027877	146028291	15	+	.	ID=2909;Type=deletion;Left=chr8:146027877-146028291;Right=chr8:146028688-146029018
chr8	CG	SV	146028688	146029018	15	+	.	ID=2909;Type=deletion;Left=chr8:146027877-146028291;Right=chr8:146028688-146029018
chr9	CG	SV	697494	698575	21	.	.	ID=2908;Type=deletion;Left=chr9:697494-697759+;Right=chr9:698292-698575+;Distance=798;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;Tandem period 57;RightRepeat=Self chain;Tandem period 57;LeftGenes=NM_015158:+;NM_153186:+;RightGenes=NM_015158:+;NM_153186:+;XRef=;Frequency=0.29
chr9	CG	SV	697494	697759	21	+	.	ID=2908;Type=deletion;Left=chr9:697494-697759;Right=chr9:698292-698575
chr9	CG	SV	698292	698575	21	+	.	ID=2908;Type=deletion;Left=chr9:697494-697759;Right=chr9:698292-698575
chr9	CG	SV	4366420	4368060	19	.	.	ID=2906;Type=deletion;Left=chr9:4366420-4366894+;Right=chr9:4367647-4368060+;Distance=1227;DiscordantMatePairAlignments=19;LeftRepeat=;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr9	CG	SV	4366420	4366894	19	+	.	ID=2906;Type=deletion;Left=chr9:4366420-4366894;Right=chr9:4367647-4368060
chr9	CG	SV	4367647	4368060	19	+	.	ID=2906;Type=deletion;Left=chr9:4366420-4366894;Right=chr9:4367647-4368060
chr9	CG	SV	16379407	16380300	11	.	.	ID=2901;Type=deletion;Left=chr9:16379407-16379800+;Right=chr9:16379743-16380300+;Distance=336;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35533078 (chr9:16379407-16379743);Frequency=1.00
chr9	CG	SV	16379407	16379800	11	+	.	ID=2901;Type=deletion;Left=chr9:16379407-16379800;Right=chr9:16379743-16380300
chr9	CG	SV	16379743	16380300	11	+	.	ID=2901;Type=deletion;Left=chr9:16379407-16379800;Right=chr9:16379743-16380300
chr9	CG	SV	22989503	22990343	12	.	.	ID=2898;Type=deletion;Left=chr9:22989503-22989908+;Right=chr9:22989835-22990343+;Distance=332;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6150952 (chr9:22989503-22989835);Frequency=1.00
chr9	CG	SV	22989503	22989908	12	+	.	ID=2898;Type=deletion;Left=chr9:22989503-22989908;Right=chr9:22989835-22990343
chr9	CG	SV	22989835	22990343	12	+	.	ID=2898;Type=deletion;Left=chr9:22989503-22989908;Right=chr9:22989835-22990343
chr9	CG	SV	23352801	23368219	149	.	.	ID=2897;Type=deletion;Left=chr9:23352801-23353271+;Right=chr9:23367685-23368219+;Distance=14884;DiscordantMatePairAlignments=149;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr9	CG	SV	23352801	23353271	149	+	.	ID=2897;Type=deletion;Left=chr9:23352801-23353271;Right=chr9:23367685-23368219
chr9	CG	SV	23367685	23368219	149	+	.	ID=2897;Type=deletion;Left=chr9:23352801-23353271;Right=chr9:23367685-23368219
chr9	CG	SV	24135482	24140684	38	.	.	ID=2895;Type=deletion;Left=chr9:24135482-24135875+;Right=chr9:24140391-24140684+;Distance=4909;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=L1MC:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	24135482	24135875	38	+	.	ID=2895;Type=deletion;Left=chr9:24135482-24135875;Right=chr9:24140391-24140684
chr9	CG	SV	24140391	24140684	38	+	.	ID=2895;Type=deletion;Left=chr9:24135482-24135875;Right=chr9:24140391-24140684
chr9	CG	SV	31281356	31283119	73	.	.	ID=2891;Type=deletion;Left=chr9:31281356-31281824+;Right=chr9:31282673-31283119+;Distance=1317;DiscordantMatePairAlignments=73;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1PA16:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71965107 (chr9:31281356-31282673);Frequency=0.71
chr9	CG	SV	31281356	31281824	73	+	.	ID=2891;Type=deletion;Left=chr9:31281356-31281824;Right=chr9:31282673-31283119
chr9	CG	SV	31282673	31283119	73	+	.	ID=2891;Type=deletion;Left=chr9:31281356-31281824;Right=chr9:31282673-31283119
chr9	CG	SV	33203182	33204375	19	.	.	ID=2889;Type=deletion;Left=chr9:33203182-33203616+;Right=chr9:33204040-33204375+;Distance=858;DiscordantMatePairAlignments=19;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71315299 (chr9:33203082-33203941);Frequency=0.94
chr9	CG	SV	33203182	33203616	19	+	.	ID=2889;Type=deletion;Left=chr9:33203182-33203616;Right=chr9:33204040-33204375
chr9	CG	SV	33204040	33204375	19	+	.	ID=2889;Type=deletion;Left=chr9:33203182-33203616;Right=chr9:33204040-33204375
chr9	CG	SV	33413376	33415267	16	.	.	ID=2888;Type=deletion;Left=chr9:33413376-33413869+;Right=chr9:33414669-33415267+;Distance=1293;DiscordantMatePairAlignments=16;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=NR_003667:-;RightGenes=NR_003667:-;XRef=;Frequency=0.47
chr9	CG	SV	33413376	33413869	16	+	.	ID=2888;Type=deletion;Left=chr9:33413376-33413869;Right=chr9:33414669-33415267
chr9	CG	SV	33414669	33415267	16	+	.	ID=2888;Type=deletion;Left=chr9:33413376-33413869;Right=chr9:33414669-33415267
chr9	CG	SV	34670979	34671976	21	.	.	ID=1361;Type=tandem-duplication;Left=chr9:34670979-34671480-;Right=chr9:34671837-34671976-;Distance=496;DiscordantMatePairAlignments=21;LeftRepeat=MLT1A:LTR:MaLR;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	34670979	34671480	21	-	.	ID=1361;Type=tandem-duplication;Left=chr9:34670979-34671480;Right=chr9:34671837-34671976
chr9	CG	SV	34671837	34671976	21	-	.	ID=1361;Type=tandem-duplication;Left=chr9:34670979-34671480;Right=chr9:34671837-34671976
chr9	CG	SV	36352905	36354400	78	.	.	ID=2886;Type=deletion;Left=chr9:36352905-36353391+;Right=chr9:36354103-36354400+;Distance=1198;DiscordantMatePairAlignments=78;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=NM_022781:-;NM_194328:-;NM_194329:-;NM_194330:-;NM_194332:-;RightGenes=NM_022781:-;NM_194328:-;NM_194329:-;NM_194330:-;NM_194332:-;XRef=;Frequency=0.88
chr9	CG	SV	36352905	36353391	78	+	.	ID=2886;Type=deletion;Left=chr9:36352905-36353391;Right=chr9:36354103-36354400
chr9	CG	SV	36354103	36354400	78	+	.	ID=2886;Type=deletion;Left=chr9:36352905-36353391;Right=chr9:36354103-36354400
chr9	CG	SV	42405934	42406070	48	.	.	ID=1356;Type=complex;Left=chr9:42405934-42406006-;Right=chr9:42405992-42406070-;Distance=64;DiscordantMatePairAlignments=48;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=SegDup;Self chain;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr9	CG	SV	42405934	42406006	48	-	.	ID=1356;Type=complex;Left=chr9:42405934-42406006;Right=chr9:42405992-42406070
chr9	CG	SV	42405992	42406070	48	-	.	ID=1356;Type=complex;Left=chr9:42405934-42406006;Right=chr9:42405992-42406070
chr9	CG	SV	42405936	44010786	103	.	.	ID=338;Type=complex;Left=chr9:42405936-42406007-;Right=chr9:44010706-44010786+;Distance=1604699;DiscordantMatePairAlignments=103;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=SegDup;Self chain;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	42405936	42406007	103	-	.	ID=338;Type=complex;Left=chr9:42405936-42406007;Right=chr9:44010706-44010786
chr9	CG	SV	44010706	44010786	103	-	.	ID=338;Type=complex;Left=chr9:42405936-42406007;Right=chr9:44010706-44010786
chr9	CG	SV	44010582	44010783	276	.	.	ID=1355;Type=complex;Left=chr9:44010582-44010684-;Right=chr9:44010678-44010783-;Distance=99;DiscordantMatePairAlignments=276;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=SegDup;Self chain;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	44010582	44010684	276	-	.	ID=1355;Type=complex;Left=chr9:44010582-44010684;Right=chr9:44010678-44010783
chr9	CG	SV	44010678	44010783	276	-	.	ID=1355;Type=complex;Left=chr9:44010582-44010684;Right=chr9:44010678-44010783
chr9	CG	SV	67912564	67914029	38	.	.	ID=2882;Type=deletion;Left=chr9:67912564-67913092+;Right=chr9:67913638-67914029+;Distance=1074;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	67912564	67913092	38	+	.	ID=2882;Type=deletion;Left=chr9:67912564-67913092;Right=chr9:67913638-67914029
chr9	CG	SV	67913638	67914029	38	+	.	ID=2882;Type=deletion;Left=chr9:67912564-67913092;Right=chr9:67913638-67914029
chr9	CG	SV	68286231	68287755	15	.	.	ID=2880;Type=deletion;Left=chr9:68286231-68286652+;Right=chr9:68287474-68287755+;Distance=1243;DiscordantMatePairAlignments=15;LeftRepeat=CER:Satellite:Satellite;SegDup;Self chain;Tandem period 144;Tandem period 48;Tandem period 96;RightRepeat=CER:Satellite:Satellite;SegDup;Self chain;Tandem period 144;Tandem period 48;Tandem period 96;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	68286231	68286652	15	+	.	ID=2880;Type=deletion;Left=chr9:68286231-68286652;Right=chr9:68287474-68287755
chr9	CG	SV	68287474	68287755	15	+	.	ID=2880;Type=deletion;Left=chr9:68286231-68286652;Right=chr9:68287474-68287755
chr9	CG	SV	70927942	70933743	30	.	.	ID=2879;Type=deletion;Left=chr9:70927942-70928492+;Right=chr9:70933176-70933743+;Distance=5234;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=L1MB8:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs67209752 (chr9:70927942-70933176);Frequency=0.88
chr9	CG	SV	70927942	70928492	30	+	.	ID=2879;Type=deletion;Left=chr9:70927942-70928492;Right=chr9:70933176-70933743
chr9	CG	SV	70933176	70933743	30	+	.	ID=2879;Type=deletion;Left=chr9:70927942-70928492;Right=chr9:70933176-70933743
chr9	CG	SV	70994347	70995287	117	.	.	ID=2878;Type=deletion;Left=chr9:70994347-70994861+;Right=chr9:70994821-70995287+;Distance=474;DiscordantMatePairAlignments=117;LeftRepeat=FAM:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_004817:+;NM_201629:+;RightGenes=NM_004817:+;NM_201629:+;XRef=rs71843308 (chr9:70994347-70994821);Frequency=0.65
chr9	CG	SV	70994347	70994861	117	+	.	ID=2878;Type=deletion;Left=chr9:70994347-70994861;Right=chr9:70994821-70995287
chr9	CG	SV	70994821	70995287	117	+	.	ID=2878;Type=deletion;Left=chr9:70994347-70994861;Right=chr9:70994821-70995287
chr9	CG	SV	71085291	71086542	16	.	.	ID=2877;Type=deletion;Left=chr9:71085291-71085763+;Right=chr9:71086451-71086542+;Distance=1160;DiscordantMatePairAlignments=16;LeftRepeat=HAL1:LINE:L1;RightRepeat=HAL1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr9	CG	SV	71085291	71085763	16	+	.	ID=2877;Type=deletion;Left=chr9:71085291-71085763;Right=chr9:71086451-71086542
chr9	CG	SV	71086451	71086542	16	+	.	ID=2877;Type=deletion;Left=chr9:71085291-71085763;Right=chr9:71086451-71086542
chr9	CG	SV	78745582	78748539	96	.	.	ID=2866;Type=deletion;Left=chr9:78745582-78745988+;Right=chr9:78747924-78748539+;Distance=2342;DiscordantMatePairAlignments=96;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67936913 (chr9:78745579-78747921);Frequency=0.12
chr9	CG	SV	78745582	78745988	96	+	.	ID=2866;Type=deletion;Left=chr9:78745582-78745988;Right=chr9:78747924-78748539
chr9	CG	SV	78747924	78748539	96	+	.	ID=2866;Type=deletion;Left=chr9:78745582-78745988;Right=chr9:78747924-78748539
chr9	CG	SV	83514183	83517096	110	.	.	ID=2863;Type=deletion;Left=chr9:83514183-83514759+;Right=chr9:83516761-83517096+;Distance=2578;DiscordantMatePairAlignments=110;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67720670 (chr9:83514168-83516746);Frequency=1.00
chr9	CG	SV	83514183	83514759	110	+	.	ID=2863;Type=deletion;Left=chr9:83514183-83514759;Right=chr9:83516761-83517096
chr9	CG	SV	83516761	83517096	110	+	.	ID=2863;Type=deletion;Left=chr9:83514183-83514759;Right=chr9:83516761-83517096
chr9	CG	SV	87091236	87091983	10	.	.	ID=2860;Type=deletion;Left=chr9:87091236-87091828+;Right=chr9:87091543-87091983+;Distance=307;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs34675880 (chr9:87091225-87091532);Frequency=0.88
chr9	CG	SV	87091236	87091828	10	+	.	ID=2860;Type=deletion;Left=chr9:87091236-87091828;Right=chr9:87091543-87091983
chr9	CG	SV	87091543	87091983	10	+	.	ID=2860;Type=deletion;Left=chr9:87091236-87091828;Right=chr9:87091543-87091983
chr9	CG	SV	90048816	90051421	86	.	.	ID=2859;Type=deletion;Left=chr9:90048816-90049290+;Right=chr9:90050796-90051421+;Distance=1980;DiscordantMatePairAlignments=86;LeftRepeat=;RightRepeat=MER21C:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs71317224 (chr9:90048816-90050796);Frequency=1.00
chr9	CG	SV	90048816	90049290	86	+	.	ID=2859;Type=deletion;Left=chr9:90048816-90049290;Right=chr9:90050796-90051421
chr9	CG	SV	90050796	90051421	86	+	.	ID=2859;Type=deletion;Left=chr9:90048816-90049290;Right=chr9:90050796-90051421
chr9	CG	SV	90481953	90482919	17	.	.	ID=2858;Type=deletion;Left=chr9:90481953-90482263+;Right=chr9:90482345-90482919+;Distance=392;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem period 18;RightRepeat=Self chain;Tandem period 18;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr9	CG	SV	90481953	90482263	17	+	.	ID=2858;Type=deletion;Left=chr9:90481953-90482263;Right=chr9:90482345-90482919
chr9	CG	SV	90482345	90482919	17	+	.	ID=2858;Type=deletion;Left=chr9:90481953-90482263;Right=chr9:90482345-90482919
chr9	CG	SV	95510176	95511667	61	.	.	ID=2857;Type=deletion;Left=chr9:95510176-95510606+;Right=chr9:95511286-95511667+;Distance=1110;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67273187 (chr9:95510176-95511286);Frequency=0.29
chr9	CG	SV	95510176	95510606	61	+	.	ID=2857;Type=deletion;Left=chr9:95510176-95510606;Right=chr9:95511286-95511667
chr9	CG	SV	95511286	95511667	61	+	.	ID=2857;Type=deletion;Left=chr9:95510176-95510606;Right=chr9:95511286-95511667
chr9	CG	SV	100348869	100351946	87	.	.	ID=2851;Type=deletion;Left=chr9:100348869-100349275+;Right=chr9:100351490-100351946+;Distance=2621;DiscordantMatePairAlignments=87;LeftRepeat=;RightRepeat=;LeftGenes=NM_005458:-;RightGenes=NM_005458:-;XRef=rs71885665 (chr9:100348864-100351485);Frequency=0.82
chr9	CG	SV	100348869	100349275	87	+	.	ID=2851;Type=deletion;Left=chr9:100348869-100349275;Right=chr9:100351490-100351946
chr9	CG	SV	100351490	100351946	87	+	.	ID=2851;Type=deletion;Left=chr9:100348869-100349275;Right=chr9:100351490-100351946
chr9	CG	SV	103221617	103222241	50	.	.	ID=1350;Type=tandem-duplication;Left=chr9:103221617-103221936-;Right=chr9:103221917-103222241-;Distance=305;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.30
chr9	CG	SV	103221617	103221936	50	-	.	ID=1350;Type=tandem-duplication;Left=chr9:103221617-103221936;Right=chr9:103221917-103222241
chr9	CG	SV	103221917	103222241	50	-	.	ID=1350;Type=tandem-duplication;Left=chr9:103221617-103221936;Right=chr9:103221917-103222241
chr9	CG	SV	103259520	103260734	122	.	.	ID=2850;Type=deletion;Left=chr9:103259520-103259960+;Right=chr9:103260203-103260734+;Distance=683;DiscordantMatePairAlignments=122;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr9	CG	SV	103259520	103259960	122	+	.	ID=2850;Type=deletion;Left=chr9:103259520-103259960;Right=chr9:103260203-103260734
chr9	CG	SV	103260203	103260734	122	+	.	ID=2850;Type=deletion;Left=chr9:103259520-103259960;Right=chr9:103260203-103260734
chr9	CG	SV	103483791	103484822	101	.	.	ID=2849;Type=deletion;Left=chr9:103483791-103484301+;Right=chr9:103484557-103484822+;Distance=766;DiscordantMatePairAlignments=101;LeftRepeat=;RightRepeat=;LeftGenes=NM_133445:-;RightGenes=NM_133445:-;XRef=rs66469119 (chr9:103483782-103484548);Frequency=1.00
chr9	CG	SV	103483791	103484301	101	+	.	ID=2849;Type=deletion;Left=chr9:103483791-103484301;Right=chr9:103484557-103484822
chr9	CG	SV	103484557	103484822	101	+	.	ID=2849;Type=deletion;Left=chr9:103483791-103484301;Right=chr9:103484557-103484822
chr9	CG	SV	106856800	106857162	61	.	.	ID=4397;Type=probable-inversion;Left=chr9:106856800-106857126+;Right=chr9:106856766-106857162-;Distance=362;DiscordantMatePairAlignments=61;LeftRepeat=Self chain;RightRepeat=LTR57-int:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr9	CG	SV	106856800	106857126	61	+	.	ID=4397;Type=probable-inversion;Left=chr9:106856800-106857126;Right=chr9:106856766-106857162
chr9	CG	SV	106856766	106857162	61	+	.	ID=4397;Type=probable-inversion;Left=chr9:106856800-106857126;Right=chr9:106856766-106857162
chr9	CG	SV	111470033	111470873	10	.	.	ID=2847;Type=deletion;Left=chr9:111470033-111470535+;Right=chr9:111470348-111470873+;Distance=315;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=L4:LINE:RTE;LeftGenes=NM_001037293:+;NM_053016:+;RightGenes=NM_001037293:+;NM_053016:+;XRef=rs68118332 (chr9:111470033-111470348);Frequency=0.65
chr9	CG	SV	111470033	111470535	10	+	.	ID=2847;Type=deletion;Left=chr9:111470033-111470535;Right=chr9:111470348-111470873
chr9	CG	SV	111470348	111470873	10	+	.	ID=2847;Type=deletion;Left=chr9:111470033-111470535;Right=chr9:111470348-111470873
chr9	CG	SV	118516898	118517827	31	.	.	ID=2842;Type=deletion;Left=chr9:118516898-118517261+;Right=chr9:118517232-118517827+;Distance=334;DiscordantMatePairAlignments=31;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_014010:-;NM_198186:-;NM_198187:-;RightGenes=NM_014010:-;NM_198186:-;NM_198187:-;XRef=rs72440176 (chr9:118516898-118517232);Frequency=0.94
chr9	CG	SV	118516898	118517261	31	+	.	ID=2842;Type=deletion;Left=chr9:118516898-118517261;Right=chr9:118517232-118517827
chr9	CG	SV	118517232	118517827	31	+	.	ID=2842;Type=deletion;Left=chr9:118516898-118517261;Right=chr9:118517232-118517827
chr9	CG	SV	121571666	121572478	25	.	.	ID=2841;Type=deletion;Left=chr9:121571666-121572227+;Right=chr9:121571984-121572478+;Distance=318;DiscordantMatePairAlignments=25;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71317246 (chr9:121571666-121571984);Frequency=1.00
chr9	CG	SV	121571666	121572227	25	+	.	ID=2841;Type=deletion;Left=chr9:121571666-121572227;Right=chr9:121571984-121572478
chr9	CG	SV	121571984	121572478	25	+	.	ID=2841;Type=deletion;Left=chr9:121571666-121572227;Right=chr9:121571984-121572478
chr9	CG	SV	121829943	121849385	40	.	.	ID=4396;Type=probable-inversion;Left=chr9:121829943-121830254+;Right=chr9:121848893-121849385-;Distance=19442;DiscordantMatePairAlignments=40;LeftRepeat=;RightRepeat=Tigger3b:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	121829943	121830254	40	+	.	ID=4396;Type=probable-inversion;Left=chr9:121829943-121830254;Right=chr9:121848893-121849385
chr9	CG	SV	121848893	121849385	40	+	.	ID=4396;Type=probable-inversion;Left=chr9:121829943-121830254;Right=chr9:121848893-121849385
chr9	CG	SV	122527192	123058804	34	.	.	ID=1349;Type=tandem-duplication;Left=chr9:122527192-122527431-;Right=chr9:123058379-123058804-;Distance=531373;DiscordantMatePairAlignments=34;LeftRepeat=;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	122527192	122527431	34	-	.	ID=1349;Type=tandem-duplication;Left=chr9:122527192-122527431;Right=chr9:123058379-123058804
chr9	CG	SV	123058379	123058804	34	-	.	ID=1349;Type=tandem-duplication;Left=chr9:122527192-122527431;Right=chr9:123058379-123058804
chr9	CG	SV	122733488	122775193	44	.	.	ID=4395;Type=distal-duplication;Left=chr9:122733488-122733900+;Right=chr9:122774723-122775193-;Distance=41705;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;RightRepeat=(TTTAA)n:Simple_repeat:Simple_repeat;LeftGenes=;RightGenes=NM_001735:-;XRef=;Frequency=0.00
chr9	CG	SV	122733488	122733900	44	+	.	ID=4395;Type=distal-duplication;Left=chr9:122733488-122733900;Right=chr9:122774723-122775193
chr9	CG	SV	122774723	122775193	44	+	.	ID=4395;Type=distal-duplication;Left=chr9:122733488-122733900;Right=chr9:122774723-122775193
chr9	CG	SV	122733802	122743573	86	.	.	ID=317;Type=distal-duplication;Left=chr9:122733802-122734331-;Right=chr9:122743021-122743573+;Distance=8690;DiscordantMatePairAlignments=86;LeftRepeat=;RightRepeat=MLT1C:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	122733802	122734331	86	-	.	ID=317;Type=distal-duplication;Left=chr9:122733802-122734331;Right=chr9:122743021-122743573
chr9	CG	SV	122743021	122743573	86	-	.	ID=317;Type=distal-duplication;Left=chr9:122733802-122734331;Right=chr9:122743021-122743573
chr9	CG	SV	123266282	123267639	87	.	.	ID=1348;Type=tandem-duplication;Left=chr9:123266282-123266724-;Right=chr9:123267136-123267639-;Distance=915;DiscordantMatePairAlignments=87;LeftRepeat=(CAAAAA)n:Simple_repeat:Simple_repeat;Tandem AAAACA;Tandem CAAAA;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=NR_003191:-;RightGenes=NR_003191:-;XRef=;Frequency=0.24
chr9	CG	SV	123266282	123266724	87	-	.	ID=1348;Type=tandem-duplication;Left=chr9:123266282-123266724;Right=chr9:123267136-123267639
chr9	CG	SV	123267136	123267639	87	-	.	ID=1348;Type=tandem-duplication;Left=chr9:123266282-123266724;Right=chr9:123267136-123267639
chr9	CG	SV	130402343	130405879	164	.	.	ID=2838;Type=deletion;Left=chr9:130402343-130402855+;Right=chr9:130405306-130405879+;Distance=2963;DiscordantMatePairAlignments=164;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001130438:+;NM_003127:+;RightGenes=NM_001130438:+;NM_003127:+;XRef=;Frequency=0.00
chr9	CG	SV	130402343	130402855	164	+	.	ID=2838;Type=deletion;Left=chr9:130402343-130402855;Right=chr9:130405306-130405879
chr9	CG	SV	130405306	130405879	164	+	.	ID=2838;Type=deletion;Left=chr9:130402343-130402855;Right=chr9:130405306-130405879
chr9	CG	SV	131198040	131198957	12	.	.	ID=1347;Type=tandem-duplication;Left=chr9:131198040-131198490-;Right=chr9:131198594-131198957-;Distance=467;DiscordantMatePairAlignments=12;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;Tandem GGAT;Tandem period 12;Tandem period 23;RightRepeat=Self chain;Tandem period 12;Tandem period 23;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	131198040	131198490	12	-	.	ID=1347;Type=tandem-duplication;Left=chr9:131198040-131198490;Right=chr9:131198594-131198957
chr9	CG	SV	131198594	131198957	12	-	.	ID=1347;Type=tandem-duplication;Left=chr9:131198040-131198490;Right=chr9:131198594-131198957
chr9	CG	SV	132070464	132075122	58	.	.	ID=2836;Type=deletion;Left=chr9:132070464-132070917+;Right=chr9:132074622-132075122+;Distance=4158;DiscordantMatePairAlignments=58;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr9	CG	SV	132070464	132070917	58	+	.	ID=2836;Type=deletion;Left=chr9:132070464-132070917;Right=chr9:132074622-132075122
chr9	CG	SV	132074622	132075122	58	+	.	ID=2836;Type=deletion;Left=chr9:132070464-132070917;Right=chr9:132074622-132075122
chr9	CG	SV	132372948	132377612	39	.	.	ID=2835;Type=deletion;Left=chr9:132372948-132373310+;Right=chr9:132377243-132377612+;Distance=4295;DiscordantMatePairAlignments=39;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L1PB2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr9	CG	SV	132372948	132373310	39	+	.	ID=2835;Type=deletion;Left=chr9:132372948-132373310;Right=chr9:132377243-132377612
chr9	CG	SV	132377243	132377612	39	+	.	ID=2835;Type=deletion;Left=chr9:132372948-132373310;Right=chr9:132377243-132377612
chr9	CG	SV	134378734	134379060	45	-	.	ID=1243;Type=interchromosomal;Left=chr9:134378734-134379060-;Right=chr13:31015557-31015963-;Distance=;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_207417:+;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	31015557	31015963	45	-	.	ID=1243;Type=interchromosomal;Left=chr9:134378734-134379060-;Right=chr13:31015557-31015963-;Distance=;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_207417:+;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	134748397	134750089	30	.	.	ID=1346;Type=tandem-duplication;Left=chr9:134748397-134748911-;Right=chr9:134749950-134750089-;Distance=1178;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_018956:+;RightGenes=NM_018956:+;XRef=;Frequency=0.35
chr9	CG	SV	134748397	134748911	30	-	.	ID=1346;Type=tandem-duplication;Left=chr9:134748397-134748911;Right=chr9:134749950-134750089
chr9	CG	SV	134749950	134750089	30	-	.	ID=1346;Type=tandem-duplication;Left=chr9:134748397-134748911;Right=chr9:134749950-134750089
chr9	CG	SV	135369043	135369923	24	.	.	ID=2831;Type=deletion;Left=chr9:135369043-135369546+;Right=chr9:135369385-135369923+;Distance=342;DiscordantMatePairAlignments=24;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs36107150 (chr9:135369043-135369385);Frequency=1.00
chr9	CG	SV	135369043	135369546	24	+	.	ID=2831;Type=deletion;Left=chr9:135369043-135369546;Right=chr9:135369385-135369923
chr9	CG	SV	135369385	135369923	24	+	.	ID=2831;Type=deletion;Left=chr9:135369043-135369546;Right=chr9:135369385-135369923
chr9	CG	SV	135403937	135404741	20	.	.	ID=2830;Type=deletion;Left=chr9:135403937-135404424+;Right=chr9:135404261-135404741+;Distance=324;DiscordantMatePairAlignments=20;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=ERVL-E:LTR:ERVL;LeftGenes=NM_001145320:+;NM_014694:+;RightGenes=NM_001145320:+;NM_014694:+;XRef=rs67544107 (chr9:135403937-135404261);Frequency=1.00
chr9	CG	SV	135403937	135404424	20	+	.	ID=2830;Type=deletion;Left=chr9:135403937-135404424;Right=chr9:135404261-135404741
chr9	CG	SV	135404261	135404741	20	+	.	ID=2830;Type=deletion;Left=chr9:135403937-135404424;Right=chr9:135404261-135404741
chr9	CG	SV	135615015	135616580	64	.	.	ID=2829;Type=deletion;Left=chr9:135615015-135615361+;Right=chr9:135616088-135616580+;Distance=1073;DiscordantMatePairAlignments=64;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr9	CG	SV	135615015	135615361	64	+	.	ID=2829;Type=deletion;Left=chr9:135615015-135615361;Right=chr9:135616088-135616580
chr9	CG	SV	135616088	135616580	64	+	.	ID=2829;Type=deletion;Left=chr9:135615015-135615361;Right=chr9:135616088-135616580
chr9	CG	SV	137353887	137358021	436	.	.	ID=2828;Type=deletion;Left=chr9:137353887-137354459+;Right=chr9:137357427-137358021+;Distance=3540;DiscordantMatePairAlignments=436;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66913532 (chr9:137353884-137357424);Frequency=0.82
chr9	CG	SV	137353887	137354459	436	+	.	ID=2828;Type=deletion;Left=chr9:137353887-137354459;Right=chr9:137357427-137358021
chr9	CG	SV	137357427	137358021	436	+	.	ID=2828;Type=deletion;Left=chr9:137353887-137354459;Right=chr9:137357427-137358021
chr9	CG	SV	138547345	138548115	10	.	.	ID=2827;Type=deletion;Left=chr9:138547345-138547979+;Right=chr9:138547616-138548115+;Distance=271;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_017617:-;RightGenes=NM_017617:-;XRef=rs10525313 (chr9:138547345-138547608);Frequency=0.47
chr9	CG	SV	138547345	138547979	10	+	.	ID=2827;Type=deletion;Left=chr9:138547345-138547979;Right=chr9:138547616-138548115
chr9	CG	SV	138547616	138548115	10	+	.	ID=2827;Type=deletion;Left=chr9:138547345-138547979;Right=chr9:138547616-138548115
chr9	CG	SV	139373330	139376167	12	.	.	ID=2826;Type=deletion;Left=chr9:139373330-139373484+;Right=chr9:139375795-139376167+;Distance=2465;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_017820:-;RightGenes=NM_017820:-;XRef=;Frequency=0.71
chr9	CG	SV	139373330	139373484	12	+	.	ID=2826;Type=deletion;Left=chr9:139373330-139373484;Right=chr9:139375795-139376167
chr9	CG	SV	139375795	139376167	12	+	.	ID=2826;Type=deletion;Left=chr9:139373330-139373484;Right=chr9:139375795-139376167
chr9	CG	SV	139683435	139683770	15	.	.	ID=1343;Type=tandem-duplication;Left=chr9:139683435-139683588-;Right=chr9:139683649-139683770-;Distance=182;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem period 37;RightRepeat=Self chain;Tandem period 37;LeftGenes=NM_001145527:+;NM_024757:+;RightGenes=NM_001145527:+;NM_024757:+;XRef=;Frequency=0.88
chr9	CG	SV	139683435	139683588	15	-	.	ID=1343;Type=tandem-duplication;Left=chr9:139683435-139683588;Right=chr9:139683649-139683770
chr9	CG	SV	139683649	139683770	15	-	.	ID=1343;Type=tandem-duplication;Left=chr9:139683435-139683588;Right=chr9:139683649-139683770
chr9	CG	SV	139892490	139897502	68	.	.	ID=2824;Type=complex;Left=chr9:139892490-139892712+;Right=chr9:139897015-139897502+;Distance=4525;DiscordantMatePairAlignments=68;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000718:+;RightGenes=NM_000718:+;XRef=;Frequency=1.00
chr9	CG	SV	139892490	139892712	68	+	.	ID=2824;Type=complex;Left=chr9:139892490-139892712;Right=chr9:139897015-139897502
chr9	CG	SV	139897015	139897502	68	+	.	ID=2824;Type=complex;Left=chr9:139892490-139892712;Right=chr9:139897015-139897502
chr9	CG	SV	139893433	139897557	29	.	.	ID=2823;Type=complex;Left=chr9:139893433-139893541+;Right=chr9:139897017-139897557+;Distance=3584;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000718:+;RightGenes=NM_000718:+;XRef=rs72411053 (chr9:139893431-139897015);Frequency=1.00
chr9	CG	SV	139893433	139893541	29	+	.	ID=2823;Type=complex;Left=chr9:139893433-139893541;Right=chr9:139897017-139897557
chr9	CG	SV	139897017	139897557	29	+	.	ID=2823;Type=complex;Left=chr9:139893433-139893541;Right=chr9:139897017-139897557
chr9	CG	SV	140032287	140034005	11	.	.	ID=2822;Type=deletion;Left=chr9:140032287-140032572+;Right=chr9:140033878-140034005+;Distance=1591;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 37;RightRepeat=Self chain;LeftGenes=NM_000718:+;RightGenes=NM_000718:+;XRef=;Frequency=0.06
chr9	CG	SV	140032287	140032572	11	+	.	ID=2822;Type=deletion;Left=chr9:140032287-140032572;Right=chr9:140033878-140034005
chr9	CG	SV	140033878	140034005	11	+	.	ID=2822;Type=deletion;Left=chr9:140032287-140032572;Right=chr9:140033878-140034005
chr10	CG	SV	4280063	4282196	116	.	.	ID=2817;Type=deletion;Left=chr10:4280063-4280572+;Right=chr10:4281683-4282196+;Distance=1620;DiscordantMatePairAlignments=116;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66666838 (chr10:4280063-4281683);Frequency=1.00
chr10	CG	SV	4280063	4280572	116	+	.	ID=2817;Type=deletion;Left=chr10:4280063-4280572;Right=chr10:4281683-4282196
chr10	CG	SV	4281683	4282196	116	+	.	ID=2817;Type=deletion;Left=chr10:4280063-4280572;Right=chr10:4281683-4282196
chr10	CG	SV	4698518	4700953	78	.	.	ID=2816;Type=deletion;Left=chr10:4698518-4699017+;Right=chr10:4700522-4700953+;Distance=2004;DiscordantMatePairAlignments=78;LeftRepeat=L1MB7:LINE:L1;RightRepeat=L1MB7:LINE:L1;LeftGenes=NR_024475:-;RightGenes=NR_024475:-;XRef=;Frequency=0.88
chr10	CG	SV	4698518	4699017	78	+	.	ID=2816;Type=deletion;Left=chr10:4698518-4699017;Right=chr10:4700522-4700953
chr10	CG	SV	4700522	4700953	78	+	.	ID=2816;Type=deletion;Left=chr10:4698518-4699017;Right=chr10:4700522-4700953
chr10	CG	SV	5192137	5314877	10	.	.	ID=2815;Type=distal-duplication;Left=chr10:5192137-5192539+;Right=chr10:5314794-5314877+;Distance=122657;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_027916:-;RightGenes=;XRef=;Frequency=0.94
chr10	CG	SV	5192137	5192539	10	+	.	ID=2815;Type=distal-duplication;Left=chr10:5192137-5192539;Right=chr10:5314794-5314877
chr10	CG	SV	5314794	5314877	10	+	.	ID=2815;Type=distal-duplication;Left=chr10:5192137-5192539;Right=chr10:5314794-5314877
chr10	CG	SV	5191808	5315036	11	.	.	ID=1340;Type=distal-duplication;Left=chr10:5191808-5192144-;Right=chr10:5314775-5315036-;Distance=122892;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_027916:-;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	5191808	5192144	11	-	.	ID=1340;Type=distal-duplication;Left=chr10:5191808-5192144;Right=chr10:5314775-5315036
chr10	CG	SV	5314775	5315036	11	-	.	ID=1340;Type=distal-duplication;Left=chr10:5191808-5192144;Right=chr10:5314775-5315036
chr10	CG	SV	5627102	5677638	253	.	.	ID=2814;Type=deletion;Left=chr10:5627102-5627638+;Right=chr10:5677118-5677638+;Distance=50016;DiscordantMatePairAlignments=253;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	5627102	5627638	253	+	.	ID=2814;Type=deletion;Left=chr10:5627102-5627638;Right=chr10:5677118-5677638
chr10	CG	SV	5677118	5677638	253	+	.	ID=2814;Type=deletion;Left=chr10:5627102-5627638;Right=chr10:5677118-5677638
chr10	CG	SV	5854594	5854695	10	+	.	ID=2334;Type=interchromosomal;Left=chr10:5854594-5854695+;Right=chr16:33858444-33858817+;Distance=;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_001115156:-;NM_001494:-;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	33858444	33858817	10	+	.	ID=2334;Type=interchromosomal;Left=chr10:5854594-5854695+;Right=chr16:33858444-33858817+;Distance=;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_001115156:-;NM_001494:-;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	6137381	6138385	228	.	.	ID=2813;Type=deletion;Left=chr10:6137381-6137833+;Right=chr10:6137879-6138385+;Distance=498;DiscordantMatePairAlignments=228;LeftRepeat=MER5B:DNA:MER1_type;RightRepeat=;LeftGenes=NM_000417:-;RightGenes=NM_000417:-;XRef=rs71389922 (chr10:6137392-6137890);Frequency=1.00
chr10	CG	SV	6137381	6137833	228	+	.	ID=2813;Type=deletion;Left=chr10:6137381-6137833;Right=chr10:6137879-6138385
chr10	CG	SV	6137879	6138385	228	+	.	ID=2813;Type=deletion;Left=chr10:6137381-6137833;Right=chr10:6137879-6138385
chr10	CG	SV	6292018	6293215	13	.	.	ID=2812;Type=deletion;Left=chr10:6292018-6292398+;Right=chr10:6292974-6293215+;Distance=956;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_001145443:+;NM_004566:+;RightGenes=NM_001145443:+;NM_004566:+;XRef=;Frequency=0.94
chr10	CG	SV	6292018	6292398	13	+	.	ID=2812;Type=deletion;Left=chr10:6292018-6292398;Right=chr10:6292974-6293215
chr10	CG	SV	6292974	6293215	13	+	.	ID=2812;Type=deletion;Left=chr10:6292018-6292398;Right=chr10:6292974-6293215
chr10	CG	SV	6451583	6458161	229	.	.	ID=2811;Type=deletion;Left=chr10:6451583-6452058+;Right=chr10:6457649-6458161+;Distance=6066;DiscordantMatePairAlignments=229;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71389924 (chr10:6451586-6457652);Frequency=0.94
chr10	CG	SV	6451583	6452058	229	+	.	ID=2811;Type=deletion;Left=chr10:6451583-6452058;Right=chr10:6457649-6458161
chr10	CG	SV	6457649	6458161	229	+	.	ID=2811;Type=deletion;Left=chr10:6451583-6452058;Right=chr10:6457649-6458161
chr10	CG	SV	6687900	6689183	85	.	.	ID=2810;Type=deletion;Left=chr10:6687900-6688393+;Right=chr10:6688859-6689183+;Distance=959;DiscordantMatePairAlignments=85;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	6687900	6688393	85	+	.	ID=2810;Type=deletion;Left=chr10:6687900-6688393;Right=chr10:6688859-6689183
chr10	CG	SV	6688859	6689183	85	+	.	ID=2810;Type=deletion;Left=chr10:6687900-6688393;Right=chr10:6688859-6689183
chr10	CG	SV	7117046	7118918	234	.	.	ID=2809;Type=deletion;Left=chr10:7117046-7117584+;Right=chr10:7118307-7118918+;Distance=1261;DiscordantMatePairAlignments=234;LeftRepeat=;RightRepeat=L1ME3A:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr10	CG	SV	7117046	7117584	234	+	.	ID=2809;Type=deletion;Left=chr10:7117046-7117584;Right=chr10:7118307-7118918
chr10	CG	SV	7118307	7118918	234	+	.	ID=2809;Type=deletion;Left=chr10:7117046-7117584;Right=chr10:7118307-7118918
chr10	CG	SV	18543082	18544116	140	.	.	ID=2806;Type=deletion;Left=chr10:18543082-18543597+;Right=chr10:18543596-18544116+;Distance=514;DiscordantMatePairAlignments=140;LeftRepeat=;RightRepeat=;LeftGenes=NM_001167945:+;NM_201571:+;NM_201572:+;NM_201593:+;NM_201596:+;NM_201597:+;RightGenes=NM_001167945:+;NM_201571:+;NM_201572:+;NM_201593:+;NM_201596:+;NM_201597:+;XRef=rs71727498 (chr10:18543082-18543596);Frequency=0.88
chr10	CG	SV	18543082	18543597	140	+	.	ID=2806;Type=deletion;Left=chr10:18543082-18543597;Right=chr10:18543596-18544116
chr10	CG	SV	18543596	18544116	140	+	.	ID=2806;Type=deletion;Left=chr10:18543082-18543597;Right=chr10:18543596-18544116
chr10	CG	SV	27039082	27042470	30	.	.	ID=2802;Type=deletion;Left=chr10:27039082-27039568+;Right=chr10:27042219-27042470+;Distance=3137;DiscordantMatePairAlignments=30;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_014317:+;RightGenes=NM_014317:+;XRef=rs67040591 (chr10:27038982-27042120);Frequency=0.88
chr10	CG	SV	27039082	27039568	30	+	.	ID=2802;Type=deletion;Left=chr10:27039082-27039568;Right=chr10:27042219-27042470
chr10	CG	SV	27042219	27042470	30	+	.	ID=2802;Type=deletion;Left=chr10:27039082-27039568;Right=chr10:27042219-27042470
chr10	CG	SV	27264207	27268455	19	.	.	ID=2801;Type=distal-duplication;Left=chr10:27264207-27264616+;Right=chr10:27268092-27268455+;Distance=3885;DiscordantMatePairAlignments=19;LeftRepeat=AluSc:SINE:Alu;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NR_026795:-;RightGenes=NR_026795:-;XRef=rs72174406 (chr10:27264209-27268094);Frequency=0.76
chr10	CG	SV	27264207	27264616	19	+	.	ID=2801;Type=distal-duplication;Left=chr10:27264207-27264616;Right=chr10:27268092-27268455
chr10	CG	SV	27268092	27268455	19	+	.	ID=2801;Type=distal-duplication;Left=chr10:27264207-27264616;Right=chr10:27268092-27268455
chr10	CG	SV	27264276	27269313	49	.	.	ID=1335;Type=distal-duplication;Left=chr10:27264276-27264633-;Right=chr10:27268849-27269313-;Distance=4680;DiscordantMatePairAlignments=49;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NR_026795:-;RightGenes=NR_026795:-;XRef=;Frequency=0.76
chr10	CG	SV	27264276	27264633	49	-	.	ID=1335;Type=distal-duplication;Left=chr10:27264276-27264633;Right=chr10:27268849-27269313
chr10	CG	SV	27268849	27269313	49	-	.	ID=1335;Type=distal-duplication;Left=chr10:27264276-27264633;Right=chr10:27268849-27269313
chr10	CG	SV	27482950	61185993	46	.	.	ID=311;Type=probable-inversion;Left=chr10:27482950-27483457-;Right=chr10:61185535-61185993+;Distance=33702078;DiscordantMatePairAlignments=46;LeftRepeat=Self chain;RightRepeat=MLT1C:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	27482950	27483457	46	-	.	ID=311;Type=probable-inversion;Left=chr10:27482950-27483457;Right=chr10:61185535-61185993
chr10	CG	SV	61185535	61185993	46	-	.	ID=311;Type=probable-inversion;Left=chr10:27482950-27483457;Right=chr10:61185535-61185993
chr10	CG	SV	32297890	32301108	106	.	.	ID=2800;Type=deletion;Left=chr10:32297890-32298330+;Right=chr10:32300622-32301108+;Distance=2732;DiscordantMatePairAlignments=106;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72294841 (chr10:32297901-32300633);Frequency=0.88
chr10	CG	SV	32297890	32298330	106	+	.	ID=2800;Type=deletion;Left=chr10:32297890-32298330;Right=chr10:32300622-32301108
chr10	CG	SV	32300622	32301108	106	+	.	ID=2800;Type=deletion;Left=chr10:32297890-32298330;Right=chr10:32300622-32301108
chr10	CG	SV	46443127	46479596	23	.	.	ID=4378;Type=probable-inversion;Left=chr10:46443127-46443327+;Right=chr10:46479344-46479596-;Distance=36469;DiscordantMatePairAlignments=23;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TG;Tandem period 9;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	46443127	46443327	23	+	.	ID=4378;Type=probable-inversion;Left=chr10:46443127-46443327;Right=chr10:46479344-46479596
chr10	CG	SV	46479344	46479596	23	+	.	ID=4378;Type=probable-inversion;Left=chr10:46443127-46443327;Right=chr10:46479344-46479596
chr10	CG	SV	46508391	46509059	37	.	.	ID=2768;Type=complex;Left=chr10:46508391-46509087+;Right=chr10:46508719-46509059+;Distance=328;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs33965796 (chr10:46508381-46508709);Frequency=0.00
chr10	CG	SV	46508391	46509087	37	+	.	ID=2768;Type=complex;Left=chr10:46508391-46509087;Right=chr10:46508719-46509059
chr10	CG	SV	46508719	46509059	37	+	.	ID=2768;Type=complex;Left=chr10:46508391-46509087;Right=chr10:46508719-46509059
chr10	CG	SV	46508391	46509381	40	.	.	ID=2769;Type=complex;Left=chr10:46508391-46508821+;Right=chr10:46508719-46509381+;Distance=328;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10705841 (chr10:46508391-46508719);Frequency=0.00
chr10	CG	SV	46508391	46508821	40	+	.	ID=2769;Type=complex;Left=chr10:46508391-46508821;Right=chr10:46508719-46509381
chr10	CG	SV	46508719	46509381	40	+	.	ID=2769;Type=complex;Left=chr10:46508391-46508821;Right=chr10:46508719-46509381
chr10	CG	SV	47112701	47113442	51	.	.	ID=2767;Type=deletion;Left=chr10:47112701-47113238+;Right=chr10:47113165-47113442+;Distance=464;DiscordantMatePairAlignments=51;LeftRepeat=(CCCTAA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem CTAACT;RightRepeat=(CCCTAA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem CTAACT;LeftGenes=;RightGenes=;XRef=rs71702761 (chr10:47112617-47113103);Frequency=1.00
chr10	CG	SV	47112701	47113238	51	+	.	ID=2767;Type=deletion;Left=chr10:47112701-47113238;Right=chr10:47113165-47113442
chr10	CG	SV	47113165	47113442	51	+	.	ID=2767;Type=deletion;Left=chr10:47112701-47113238;Right=chr10:47113165-47113442
chr10	CG	SV	47124524	51159023	15	.	.	ID=4377;Type=probable-inversion;Left=chr10:47124524-47124938+;Right=chr10:51158781-51159023-;Distance=4034499;DiscordantMatePairAlignments=15;LeftRepeat=MIRb:SINE:MIR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr10	CG	SV	47124524	47124938	15	+	.	ID=4377;Type=probable-inversion;Left=chr10:47124524-47124938;Right=chr10:51158781-51159023
chr10	CG	SV	51158781	51159023	15	+	.	ID=4377;Type=probable-inversion;Left=chr10:47124524-47124938;Right=chr10:51158781-51159023
chr10	CG	SV	49587177	49587857	12	.	.	ID=2765;Type=deletion;Left=chr10:49587177-49587710+;Right=chr10:49587500-49587857+;Distance=323;DiscordantMatePairAlignments=12;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_020945:+;RightGenes=NM_020945:+;XRef=rs66463113 (chr10:49587162-49587485);Frequency=1.00
chr10	CG	SV	49587177	49587710	12	+	.	ID=2765;Type=deletion;Left=chr10:49587177-49587710;Right=chr10:49587500-49587857
chr10	CG	SV	49587500	49587857	12	+	.	ID=2765;Type=deletion;Left=chr10:49587177-49587710;Right=chr10:49587500-49587857
chr10	CG	SV	54453548	54459337	31	.	.	ID=2762;Type=deletion;Left=chr10:54453548-54454013+;Right=chr10:54458835-54459337+;Distance=5287;DiscordantMatePairAlignments=31;LeftRepeat=LTR8:LTR:ERV1;Self chain;RightRepeat=HERV30:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr10	CG	SV	54453548	54454013	31	+	.	ID=2762;Type=deletion;Left=chr10:54453548-54454013;Right=chr10:54458835-54459337
chr10	CG	SV	54458835	54459337	31	+	.	ID=2762;Type=deletion;Left=chr10:54453548-54454013;Right=chr10:54458835-54459337
chr10	CG	SV	59943899	72057756	25	.	.	ID=4375;Type=complex;Left=chr10:59943899-59944363+;Right=chr10:72057373-72057756-;Distance=12113857;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;RightRepeat=L1MB7:LINE:L1;Self chain;LeftGenes=NM_001080512:+;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	59943899	59944363	25	+	.	ID=4375;Type=complex;Left=chr10:59943899-59944363;Right=chr10:72057373-72057756
chr10	CG	SV	72057373	72057756	25	+	.	ID=4375;Type=complex;Left=chr10:59943899-59944363;Right=chr10:72057373-72057756
chr10	CG	SV	62860591	72058324	24	.	.	ID=2759;Type=complex;Left=chr10:62860591-62860911+;Right=chr10:72057866-72058324+;Distance=9197275;DiscordantMatePairAlignments=24;LeftRepeat=L1MC1:LINE:L1;Self chain;RightRepeat=L1MB7:LINE:L1;Self chain;LeftGenes=NM_178505:-;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	62860591	62860911	24	+	.	ID=2759;Type=complex;Left=chr10:62860591-62860911;Right=chr10:72057866-72058324
chr10	CG	SV	72057866	72058324	24	+	.	ID=2759;Type=complex;Left=chr10:62860591-62860911;Right=chr10:72057866-72058324
chr10	CG	SV	63508026	63508237	19	.	.	ID=4374;Type=probable-inversion;Left=chr10:63508026-63508580+;Right=chr10:63508019-63508237-;Distance=211;DiscordantMatePairAlignments=19;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_032199:+;RightGenes=NM_032199:+;XRef=;Frequency=0.00
chr10	CG	SV	63508026	63508580	19	+	.	ID=4374;Type=probable-inversion;Left=chr10:63508026-63508580;Right=chr10:63508019-63508237
chr10	CG	SV	63508019	63508237	19	+	.	ID=4374;Type=probable-inversion;Left=chr10:63508026-63508580;Right=chr10:63508019-63508237
chr10	CG	SV	75474370	75755110	12	.	.	ID=2757;Type=deletion;Left=chr10:75474370-75474710+;Right=chr10:75754722-75755110+;Distance=280352;DiscordantMatePairAlignments=12;LeftRepeat=L1ME3B:LINE:L1;Self chain;RightRepeat=L1MA6:LINE:L1;Self chain;LeftGenes=NM_003373:+;NM_014000:+;RightGenes=NM_001123:+;NM_006721:+;XRef=;Frequency=0.00
chr10	CG	SV	75474370	75474710	12	+	.	ID=2757;Type=deletion;Left=chr10:75474370-75474710;Right=chr10:75754722-75755110
chr10	CG	SV	75754722	75755110	12	+	.	ID=2757;Type=deletion;Left=chr10:75474370-75474710;Right=chr10:75754722-75755110
chr10	CG	SV	77925584	77931583	27	.	.	ID=2756;Type=deletion;Left=chr10:77925584-77925901+;Right=chr10:77931031-77931583+;Distance=5447;DiscordantMatePairAlignments=27;LeftRepeat=L1MD:LINE:L1;Self chain;RightRepeat=L1PA16:LINE:L1;Self chain;LeftGenes=NM_032024:+;RightGenes=NM_032024:+;XRef=;Frequency=1.00
chr10	CG	SV	77925584	77925901	27	+	.	ID=2756;Type=deletion;Left=chr10:77925584-77925901;Right=chr10:77931031-77931583
chr10	CG	SV	77931031	77931583	27	+	.	ID=2756;Type=deletion;Left=chr10:77925584-77925901;Right=chr10:77931031-77931583
chr10	CG	SV	78470917	78471886	12	.	.	ID=2754;Type=deletion;Left=chr10:78470917-78471344+;Right=chr10:78471236-78471886+;Distance=319;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;Tandem period 183;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_001014797:-;NM_001161352:-;NM_001161353:-;NM_002247:-;RightGenes=NM_001014797:-;NM_001161352:-;NM_001161353:-;NM_002247:-;XRef=rs34313877 (chr10:78470917-78471236);Frequency=1.00
chr10	CG	SV	78470917	78471344	12	+	.	ID=2754;Type=deletion;Left=chr10:78470917-78471344;Right=chr10:78471236-78471886
chr10	CG	SV	78471236	78471886	12	+	.	ID=2754;Type=deletion;Left=chr10:78470917-78471344;Right=chr10:78471236-78471886
chr10	CG	SV	78863313	78886302	75	.	.	ID=1298;Type=tandem-duplication;Left=chr10:78863313-78863822-;Right=chr10:78885742-78886302-;Distance=22480;DiscordantMatePairAlignments=75;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_001014797:-;NM_001161352:-;NM_001161353:-;NM_002247:-;RightGenes=NM_001014797:-;NM_001161352:-;NM_001161353:-;NM_002247:-;XRef=;Frequency=0.00
chr10	CG	SV	78863313	78863822	75	-	.	ID=1298;Type=tandem-duplication;Left=chr10:78863313-78863822;Right=chr10:78885742-78886302
chr10	CG	SV	78885742	78886302	75	-	.	ID=1298;Type=tandem-duplication;Left=chr10:78863313-78863822;Right=chr10:78885742-78886302
chr10	CG	SV	80762188	80763029	108	.	.	ID=2753;Type=deletion;Left=chr10:80762188-80762670+;Right=chr10:80762786-80763029+;Distance=598;DiscordantMatePairAlignments=108;LeftRepeat=Self chain;RightRepeat=L1ME3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr10	CG	SV	80762188	80762670	108	+	.	ID=2753;Type=deletion;Left=chr10:80762188-80762670;Right=chr10:80762786-80763029
chr10	CG	SV	80762786	80763029	108	+	.	ID=2753;Type=deletion;Left=chr10:80762188-80762670;Right=chr10:80762786-80763029
chr10	CG	SV	84227959	84228866	103	.	.	ID=2752;Type=deletion;Left=chr10:84227959-84228480+;Right=chr10:84228452-84228866+;Distance=493;DiscordantMatePairAlignments=103;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;RightGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;XRef=rs66512026 (chr10:84227952-84228445);Frequency=0.82
chr10	CG	SV	84227959	84228480	103	+	.	ID=2752;Type=deletion;Left=chr10:84227959-84228480;Right=chr10:84228452-84228866
chr10	CG	SV	84228452	84228866	103	+	.	ID=2752;Type=deletion;Left=chr10:84227959-84228480;Right=chr10:84228452-84228866
chr10	CG	SV	84422076	84623914	24	.	.	ID=2751;Type=deletion;Left=chr10:84422076-84422598+;Right=chr10:84623549-84623914+;Distance=201473;DiscordantMatePairAlignments=24;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=Self chain;LeftGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;RightGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;XRef=;Frequency=0.00
chr10	CG	SV	84422076	84422598	24	+	.	ID=2751;Type=deletion;Left=chr10:84422076-84422598;Right=chr10:84623549-84623914
chr10	CG	SV	84623549	84623914	24	+	.	ID=2751;Type=deletion;Left=chr10:84422076-84422598;Right=chr10:84623549-84623914
chr10	CG	SV	84424587	84631678	63	.	.	ID=4371;Type=probable-inversion;Left=chr10:84424587-84425031+;Right=chr10:84631207-84631678-;Distance=207091;DiscordantMatePairAlignments=63;LeftRepeat=LTR8A:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;RightGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;XRef=;Frequency=0.00
chr10	CG	SV	84424587	84425031	63	+	.	ID=4371;Type=probable-inversion;Left=chr10:84424587-84425031;Right=chr10:84631207-84631678
chr10	CG	SV	84631207	84631678	63	+	.	ID=4371;Type=probable-inversion;Left=chr10:84424587-84425031;Right=chr10:84631207-84631678
chr10	CG	SV	89265777	89266816	25	.	.	ID=2750;Type=deletion;Left=chr10:89265777-89266243+;Right=chr10:89266548-89266816+;Distance=771;DiscordantMatePairAlignments=25;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_004897:+;RightGenes=NM_004897:+;XRef=;Frequency=0.71
chr10	CG	SV	89265777	89266243	25	+	.	ID=2750;Type=deletion;Left=chr10:89265777-89266243;Right=chr10:89266548-89266816
chr10	CG	SV	89266548	89266816	25	+	.	ID=2750;Type=deletion;Left=chr10:89265777-89266243;Right=chr10:89266548-89266816
chr10	CG	SV	94124579	94127840	18	.	.	ID=2748;Type=deletion;Left=chr10:94124579-94125008+;Right=chr10:94127633-94127840+;Distance=3054;DiscordantMatePairAlignments=18;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=rs66665405 (chr10:94124594-94127633);Frequency=1.00
chr10	CG	SV	94124579	94125008	18	+	.	ID=2748;Type=deletion;Left=chr10:94124579-94125008;Right=chr10:94127633-94127840
chr10	CG	SV	94127633	94127840	18	+	.	ID=2748;Type=deletion;Left=chr10:94124579-94125008;Right=chr10:94127633-94127840
chr10	CG	SV	95535467	95536941	47	.	.	ID=2747;Type=deletion;Left=chr10:95535467-95535756+;Right=chr10:95536485-95536941+;Distance=1018;DiscordantMatePairAlignments=47;LeftRepeat=L4:LINE:RTE;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=NM_005097:+;RightGenes=NM_005097:+;XRef=;Frequency=1.00
chr10	CG	SV	95535467	95535756	47	+	.	ID=2747;Type=deletion;Left=chr10:95535467-95535756;Right=chr10:95536485-95536941
chr10	CG	SV	95536485	95536941	47	+	.	ID=2747;Type=deletion;Left=chr10:95535467-95535756;Right=chr10:95536485-95536941
chr10	CG	SV	97196508	97198010	31	.	.	ID=1297;Type=distal-duplication;Left=chr10:97196508-97196775-;Right=chr10:97197637-97198010-;Distance=1235;DiscordantMatePairAlignments=31;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_015385:-;NM_024991:-;RightGenes=NM_015385:-;NM_024991:-;XRef=;Frequency=0.76
chr10	CG	SV	97196508	97196775	31	-	.	ID=1297;Type=distal-duplication;Left=chr10:97196508-97196775;Right=chr10:97197637-97198010
chr10	CG	SV	97197637	97198010	31	-	.	ID=1297;Type=distal-duplication;Left=chr10:97196508-97196775;Right=chr10:97197637-97198010
chr10	CG	SV	97197045	97198488	42	.	.	ID=2746;Type=distal-duplication;Left=chr10:97197045-97197318+;Right=chr10:97198018-97198488+;Distance=973;DiscordantMatePairAlignments=42;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=NM_015385:-;NM_024991:-;RightGenes=NM_015385:-;NM_024991:-;XRef=rs71977870 (chr10:97197044-97198017);Frequency=0.76
chr10	CG	SV	97197045	97197318	42	+	.	ID=2746;Type=distal-duplication;Left=chr10:97197045-97197318;Right=chr10:97198018-97198488
chr10	CG	SV	97198018	97198488	42	+	.	ID=2746;Type=distal-duplication;Left=chr10:97197045-97197318;Right=chr10:97198018-97198488
chr10	CG	SV	99024855	99027890	229	.	.	ID=2745;Type=deletion;Left=chr10:99024855-99025302+;Right=chr10:99027389-99027890+;Distance=2534;DiscordantMatePairAlignments=229;LeftRepeat=Self chain;RightRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;Tandem AAAAT;LeftGenes=NM_032900:-;RightGenes=NM_032900:-;XRef=rs67953540 (chr10:99024853-99027387);Frequency=1.00
chr10	CG	SV	99024855	99025302	229	+	.	ID=2745;Type=deletion;Left=chr10:99024855-99025302;Right=chr10:99027389-99027890
chr10	CG	SV	99027389	99027890	229	+	.	ID=2745;Type=deletion;Left=chr10:99024855-99025302;Right=chr10:99027389-99027890
chr10	CG	SV	107242992	107243762	15	.	.	ID=2743;Type=deletion;Left=chr10:107242992-107243545+;Right=chr10:107243345-107243762+;Distance=353;DiscordantMatePairAlignments=15;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6144069 (chr10:107242988-107243341);Frequency=0.76
chr10	CG	SV	107242992	107243545	15	+	.	ID=2743;Type=deletion;Left=chr10:107242992-107243545;Right=chr10:107243345-107243762
chr10	CG	SV	107243345	107243762	15	+	.	ID=2743;Type=deletion;Left=chr10:107242992-107243545;Right=chr10:107243345-107243762
chr10	CG	SV	107940674	107942082	179	.	.	ID=2742;Type=deletion;Left=chr10:107940674-107941239+;Right=chr10:107941587-107942082+;Distance=913;DiscordantMatePairAlignments=179;LeftRepeat=MER5A1:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67619770 (chr10:107940674-107941587);Frequency=0.94
chr10	CG	SV	107940674	107941239	179	+	.	ID=2742;Type=deletion;Left=chr10:107940674-107941239;Right=chr10:107941587-107942082
chr10	CG	SV	107941587	107942082	179	+	.	ID=2742;Type=deletion;Left=chr10:107940674-107941239;Right=chr10:107941587-107942082
chr10	CG	SV	108020311	108022871	53	.	.	ID=2741;Type=deletion;Left=chr10:108020311-108020773+;Right=chr10:108022535-108022871+;Distance=2224;DiscordantMatePairAlignments=53;LeftRepeat=MER52-int:LTR:ERV1;RightRepeat=MER52-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr10	CG	SV	108020311	108020773	53	+	.	ID=2741;Type=deletion;Left=chr10:108020311-108020773;Right=chr10:108022535-108022871
chr10	CG	SV	108022535	108022871	53	+	.	ID=2741;Type=deletion;Left=chr10:108020311-108020773;Right=chr10:108022535-108022871
chr10	CG	SV	111562114	111568712	52	.	.	ID=2739;Type=deletion;Left=chr10:111562114-111562675+;Right=chr10:111568220-111568712+;Distance=6106;DiscordantMatePairAlignments=52;LeftRepeat=L1HS:LINE:L1;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66614434 (chr10:111562100-111568206);Frequency=1.00
chr10	CG	SV	111562114	111562675	52	+	.	ID=2739;Type=deletion;Left=chr10:111562114-111562675;Right=chr10:111568220-111568712
chr10	CG	SV	111568220	111568712	52	+	.	ID=2739;Type=deletion;Left=chr10:111562114-111562675;Right=chr10:111568220-111568712
chr10	CG	SV	114102173	114107174	127	.	.	ID=2738;Type=deletion;Left=chr10:114102173-114102668+;Right=chr10:114106650-114107174+;Distance=4477;DiscordantMatePairAlignments=127;LeftRepeat=AluSx:SINE:Alu;RightRepeat=MIRm:SINE:MIR;LeftGenes=NR_028134:-;RightGenes=;XRef=rs68033286 (chr10:114102171-114106648);Frequency=0.88
chr10	CG	SV	114102173	114102668	127	+	.	ID=2738;Type=deletion;Left=chr10:114102173-114102668;Right=chr10:114106650-114107174
chr10	CG	SV	114106650	114107174	127	+	.	ID=2738;Type=deletion;Left=chr10:114102173-114102668;Right=chr10:114106650-114107174
chr10	CG	SV	114148103	114148667	10	.	.	ID=2737;Type=deletion;Left=chr10:114148103-114148652+;Right=chr10:114148443-114148667+;Distance=340;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_016234:+;NM_203379:+;NM_203380:+;RightGenes=NM_016234:+;NM_203379:+;NM_203380:+;XRef=rs67745387 (chr10:114147791-114148129);Frequency=1.00
chr10	CG	SV	114148103	114148652	10	+	.	ID=2737;Type=deletion;Left=chr10:114148103-114148652;Right=chr10:114148443-114148667
chr10	CG	SV	114148443	114148667	10	+	.	ID=2737;Type=deletion;Left=chr10:114148103-114148652;Right=chr10:114148443-114148667
chr10	CG	SV	119624273	119625112	16	.	.	ID=2735;Type=deletion;Left=chr10:119624273-119624845+;Right=chr10:119624604-119625112+;Distance=331;DiscordantMatePairAlignments=16;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71389988 (chr10:119624273-119624604);Frequency=1.00
chr10	CG	SV	119624273	119624845	16	+	.	ID=2735;Type=deletion;Left=chr10:119624273-119624845;Right=chr10:119624604-119625112
chr10	CG	SV	119624604	119625112	16	+	.	ID=2735;Type=deletion;Left=chr10:119624273-119624845;Right=chr10:119624604-119625112
chr10	CG	SV	122216866	122219229	30	.	.	ID=2734;Type=deletion;Left=chr10:122216866-122217412+;Right=chr10:122219003-122219229+;Distance=2137;DiscordantMatePairAlignments=30;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_001030059:+;RightGenes=NM_001030059:+;XRef=rs66889305 (chr10:122216588-122218737);Frequency=1.00
chr10	CG	SV	122216866	122217412	30	+	.	ID=2734;Type=deletion;Left=chr10:122216866-122217412;Right=chr10:122219003-122219229
chr10	CG	SV	122219003	122219229	30	+	.	ID=2734;Type=deletion;Left=chr10:122216866-122217412;Right=chr10:122219003-122219229
chr10	CG	SV	127180671	127187209	115	.	.	ID=4370;Type=complex;Left=chr10:127180671-127180985+;Right=chr10:127186722-127187209-;Distance=6538;DiscordantMatePairAlignments=115;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr10	CG	SV	127180671	127180985	115	+	.	ID=4370;Type=complex;Left=chr10:127180671-127180985;Right=chr10:127186722-127187209
chr10	CG	SV	127186722	127187209	115	+	.	ID=4370;Type=complex;Left=chr10:127180671-127180985;Right=chr10:127186722-127187209
chr10	CG	SV	127181647	127187540	29	.	.	ID=2731;Type=complex;Left=chr10:127181647-127182107+;Right=chr10:127187226-127187540+;Distance=5579;DiscordantMatePairAlignments=29;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66681237 (chr10:127181645-127187224);Frequency=0.82
chr10	CG	SV	127181647	127182107	29	+	.	ID=2731;Type=complex;Left=chr10:127181647-127182107;Right=chr10:127187226-127187540
chr10	CG	SV	127187226	127187540	29	+	.	ID=2731;Type=complex;Left=chr10:127181647-127182107;Right=chr10:127187226-127187540
chr10	CG	SV	127584981	127597579	31	.	.	ID=287;Type=probable-inversion;Left=chr10:127584981-127585506-;Right=chr10:127597367-127597579+;Distance=11861;DiscordantMatePairAlignments=31;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_145235:+;RightGenes=NM_145235:+;XRef=;Frequency=0.59
chr10	CG	SV	127584981	127585506	31	-	.	ID=287;Type=probable-inversion;Left=chr10:127584981-127585506;Right=chr10:127597367-127597579
chr10	CG	SV	127597367	127597579	31	-	.	ID=287;Type=probable-inversion;Left=chr10:127584981-127585506;Right=chr10:127597367-127597579
chr10	CG	SV	127735179	127736566	145	.	.	ID=2728;Type=deletion;Left=chr10:127735179-127735742+;Right=chr10:127735979-127736566+;Distance=800;DiscordantMatePairAlignments=145;LeftRepeat=;RightRepeat=;LeftGenes=NM_003474:-;NM_021641:-;RightGenes=NM_003474:-;NM_021641:-;XRef=rs67650775 (chr10:127735174-127735974);Frequency=0.94
chr10	CG	SV	127735179	127735742	145	+	.	ID=2728;Type=deletion;Left=chr10:127735179-127735742;Right=chr10:127735979-127736566
chr10	CG	SV	127735979	127736566	145	+	.	ID=2728;Type=deletion;Left=chr10:127735179-127735742;Right=chr10:127735979-127736566
chr10	CG	SV	132048526	132049316	15	.	.	ID=2725;Type=deletion;Left=chr10:132048526-132048908+;Right=chr10:132048968-132049316+;Distance=442;DiscordantMatePairAlignments=15;LeftRepeat=(TC)n:Simple_repeat:Simple_repeat;Tandem CTCTCT;Tandem period 10;Tandem period 14;Tandem period 8;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs33996726 (chr10:132048415-132048801);Frequency=1.00
chr10	CG	SV	132048526	132048908	15	+	.	ID=2725;Type=deletion;Left=chr10:132048526-132048908;Right=chr10:132048968-132049316
chr10	CG	SV	132048968	132049316	15	+	.	ID=2725;Type=deletion;Left=chr10:132048526-132048908;Right=chr10:132048968-132049316
chr10	CG	SV	132147876	132148550	13	.	.	ID=2724;Type=deletion;Left=chr10:132147876-132148209+;Right=chr10:132148342-132148550+;Distance=466;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 26;RightRepeat=Self chain;Tandem period 26;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr10	CG	SV	132147876	132148209	13	+	.	ID=2724;Type=deletion;Left=chr10:132147876-132148209;Right=chr10:132148342-132148550
chr10	CG	SV	132148342	132148550	13	+	.	ID=2724;Type=deletion;Left=chr10:132147876-132148209;Right=chr10:132148342-132148550
chr10	CG	SV	132748479	132749230	10	.	.	ID=2723;Type=deletion;Left=chr10:132748479-132749061+;Right=chr10:132748828-132749230+;Distance=349;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67563509 (chr10:132748461-132748810);Frequency=0.76
chr10	CG	SV	132748479	132749061	10	+	.	ID=2723;Type=deletion;Left=chr10:132748479-132749061;Right=chr10:132748828-132749230
chr10	CG	SV	132748828	132749230	10	+	.	ID=2723;Type=deletion;Left=chr10:132748479-132749061;Right=chr10:132748828-132749230
chr10	CG	SV	133501893	133502333	32	.	.	ID=1295;Type=tandem-duplication;Left=chr10:133501893-133502101-;Right=chr10:133502120-133502333-;Distance=232;DiscordantMatePairAlignments=32;LeftRepeat=L1MD2:LINE:L1;Self chain;RightRepeat=L1MD2:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr10	CG	SV	133501893	133502101	32	-	.	ID=1295;Type=tandem-duplication;Left=chr10:133501893-133502101;Right=chr10:133502120-133502333
chr10	CG	SV	133502120	133502333	32	-	.	ID=1295;Type=tandem-duplication;Left=chr10:133501893-133502101;Right=chr10:133502120-133502333
chr10	CG	SV	134577596	134578693	68	.	.	ID=2721;Type=deletion;Left=chr10:134577596-134578111+;Right=chr10:134578322-134578693+;Distance=726;DiscordantMatePairAlignments=68;LeftRepeat=Self chain;Tandem period 33;RightRepeat=Self chain;Tandem period 33;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr10	CG	SV	134577596	134578111	68	+	.	ID=2721;Type=deletion;Left=chr10:134577596-134578111;Right=chr10:134578322-134578693
chr10	CG	SV	134578322	134578693	68	+	.	ID=2721;Type=deletion;Left=chr10:134577596-134578111;Right=chr10:134578322-134578693
chr10	CG	SV	134954797	134956482	171	.	.	ID=2720;Type=deletion;Left=chr10:134954797-134955274+;Right=chr10:134955988-134956482+;Distance=1191;DiscordantMatePairAlignments=171;LeftRepeat=Self chain;Tandem period 188;Tandem period 94;RightRepeat=Self chain;LeftGenes=NM_006659:-;RightGenes=NM_006659:-;XRef=rs72187097 (chr10:134954841-134955956);Frequency=0.88
chr10	CG	SV	134954797	134955274	171	+	.	ID=2720;Type=deletion;Left=chr10:134954797-134955274;Right=chr10:134955988-134956482
chr10	CG	SV	134955988	134956482	171	+	.	ID=2720;Type=deletion;Left=chr10:134954797-134955274;Right=chr10:134955988-134956482
chr11	CG	SV	632622	632869	23	.	.	ID=1288;Type=tandem-duplication;Left=chr11:632622-632720-;Right=chr11:632768-632869-;Distance=149;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;Tandem period 28;RightRepeat=Self chain;Tandem period 16;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr11	CG	SV	632622	632720	23	-	.	ID=1288;Type=tandem-duplication;Left=chr11:632622-632720;Right=chr11:632768-632869
chr11	CG	SV	632768	632869	23	-	.	ID=1288;Type=tandem-duplication;Left=chr11:632622-632720;Right=chr11:632768-632869
chr11	CG	SV	1169033	1170150	20	.	.	ID=1283;Type=tandem-duplication;Left=chr11:1169033-1169371-;Right=chr11:1169443-1170150-;Distance=779;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;Tandem period 48;Tandem period 96;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	1169033	1169371	20	-	.	ID=1283;Type=tandem-duplication;Left=chr11:1169033-1169371;Right=chr11:1169443-1170150
chr11	CG	SV	1169443	1170150	20	-	.	ID=1283;Type=tandem-duplication;Left=chr11:1169033-1169371;Right=chr11:1169443-1170150
chr11	CG	SV	1619486	1620499	90	.	.	ID=2714;Type=deletion;Left=chr11:1619486-1619945+;Right=chr11:1620130-1620499+;Distance=644;DiscordantMatePairAlignments=90;LeftRepeat=Self chain;Tandem period 16;Tandem period 31;RightRepeat=(CACCC)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 16;Tandem period 31;LeftGenes=NM_053005:-;RightGenes=NM_053005:-;XRef=;Frequency=0.94
chr11	CG	SV	1619486	1619945	90	+	.	ID=2714;Type=deletion;Left=chr11:1619486-1619945;Right=chr11:1620130-1620499
chr11	CG	SV	1620130	1620499	90	+	.	ID=2714;Type=deletion;Left=chr11:1619486-1619945;Right=chr11:1620130-1620499
chr11	CG	SV	1871855	1893986	83	.	.	ID=2713;Type=deletion;Left=chr11:1871855-1872261+;Right=chr11:1893533-1893986+;Distance=21678;DiscordantMatePairAlignments=83;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	1871855	1872261	83	+	.	ID=2713;Type=deletion;Left=chr11:1871855-1872261;Right=chr11:1893533-1893986
chr11	CG	SV	1893533	1893986	83	+	.	ID=2713;Type=deletion;Left=chr11:1871855-1872261;Right=chr11:1893533-1893986
chr11	CG	SV	2171926	2172672	10	.	.	ID=2712;Type=deletion;Left=chr11:2171926-2172387+;Right=chr11:2172180-2172672+;Distance=254;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 42;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	2171926	2172387	10	+	.	ID=2712;Type=deletion;Left=chr11:2171926-2172387;Right=chr11:2172180-2172672
chr11	CG	SV	2172180	2172672	10	+	.	ID=2712;Type=deletion;Left=chr11:2171926-2172387;Right=chr11:2172180-2172672
chr11	CG	SV	5716663	5719487	35	.	.	ID=2710;Type=deletion;Left=chr11:5716663-5717104+;Right=chr11:5718941-5719487+;Distance=2278;DiscordantMatePairAlignments=35;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr11	CG	SV	5716663	5717104	35	+	.	ID=2710;Type=deletion;Left=chr11:5716663-5717104;Right=chr11:5718941-5719487
chr11	CG	SV	5718941	5719487	35	+	.	ID=2710;Type=deletion;Left=chr11:5716663-5717104;Right=chr11:5718941-5719487
chr11	CG	SV	9280335	9281646	11	.	.	ID=2706;Type=deletion;Left=chr11:9280335-9280784+;Right=chr11:9281343-9281646+;Distance=1008;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001165030:-;NM_015012:-;NR_028491:-;RightGenes=NM_001165030:-;NM_015012:-;NR_028491:-;XRef=rs72400718 (chr11:9280262-9281272);Frequency=0.71
chr11	CG	SV	9280335	9280784	11	+	.	ID=2706;Type=deletion;Left=chr11:9280335-9280784;Right=chr11:9281343-9281646
chr11	CG	SV	9281343	9281646	11	+	.	ID=2706;Type=deletion;Left=chr11:9280335-9280784;Right=chr11:9281343-9281646
chr11	CG	SV	12109134	12109953	12	.	.	ID=2705;Type=deletion;Left=chr11:12109134-12109615+;Right=chr11:12109458-12109953+;Distance=324;DiscordantMatePairAlignments=12;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_014632:+;RightGenes=NM_014632:+;XRef=rs72288281 (chr11:12109134-12109458);Frequency=0.88
chr11	CG	SV	12109134	12109615	12	+	.	ID=2705;Type=deletion;Left=chr11:12109134-12109615;Right=chr11:12109458-12109953
chr11	CG	SV	12109458	12109953	12	+	.	ID=2705;Type=deletion;Left=chr11:12109134-12109615;Right=chr11:12109458-12109953
chr11	CG	SV	19708432	19714625	59	.	.	ID=2701;Type=deletion;Left=chr11:19708432-19708950+;Right=chr11:19714181-19714625+;Distance=5749;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=;LeftGenes=NM_001111018:+;NM_145117:+;NM_182964:+;RightGenes=NM_001111018:+;NM_145117:+;NM_182964:+;XRef=;Frequency=0.00
chr11	CG	SV	19708432	19708950	59	+	.	ID=2701;Type=deletion;Left=chr11:19708432-19708950;Right=chr11:19714181-19714625
chr11	CG	SV	19714181	19714625	59	+	.	ID=2701;Type=deletion;Left=chr11:19708432-19708950;Right=chr11:19714181-19714625
chr11	CG	SV	24399729	24409349	54	.	.	ID=2699;Type=deletion;Left=chr11:24399729-24400093+;Right=chr11:24408863-24409349+;Distance=9134;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr11	CG	SV	24399729	24400093	54	+	.	ID=2699;Type=deletion;Left=chr11:24399729-24400093;Right=chr11:24408863-24409349
chr11	CG	SV	24408863	24409349	54	+	.	ID=2699;Type=deletion;Left=chr11:24399729-24400093;Right=chr11:24408863-24409349
chr11	CG	SV	27613839	27614560	13	.	.	ID=2696;Type=deletion;Left=chr11:27613839-27614357+;Right=chr11:27614171-27614560+;Distance=332;DiscordantMatePairAlignments=13;LeftRepeat=MER61E:LTR:ERV1;RightRepeat=MER61E:LTR:ERV1;LeftGenes=NR_002832:+;RightGenes=NR_002832:+;XRef=rs10525413 (chr11:27613839-27614171);Frequency=0.88
chr11	CG	SV	27613839	27614357	13	+	.	ID=2696;Type=deletion;Left=chr11:27613839-27614357;Right=chr11:27614171-27614560
chr11	CG	SV	27614171	27614560	13	+	.	ID=2696;Type=deletion;Left=chr11:27613839-27614357;Right=chr11:27614171-27614560
chr11	CG	SV	29924155	29925387	27	.	.	ID=2694;Type=deletion;Left=chr11:29924155-29924643+;Right=chr11:29925043-29925387+;Distance=888;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72176999 (chr11:29924154-29925042);Frequency=0.71
chr11	CG	SV	29924155	29924643	27	+	.	ID=2694;Type=deletion;Left=chr11:29924155-29924643;Right=chr11:29925043-29925387
chr11	CG	SV	29925043	29925387	27	+	.	ID=2694;Type=deletion;Left=chr11:29924155-29924643;Right=chr11:29925043-29925387
chr11	CG	SV	30392942	30410818	35	.	.	ID=1282;Type=tandem-duplication;Left=chr11:30392942-30393285-;Right=chr11:30410395-30410818-;Distance=17533;DiscordantMatePairAlignments=35;LeftRepeat=;RightRepeat=;LeftGenes=NM_001145399:-;NM_001584:-;RightGenes=NM_001145399:-;NM_001584:-;XRef=;Frequency=0.00
chr11	CG	SV	30392942	30393285	35	-	.	ID=1282;Type=tandem-duplication;Left=chr11:30392942-30393285;Right=chr11:30410395-30410818
chr11	CG	SV	30410395	30410818	35	-	.	ID=1282;Type=tandem-duplication;Left=chr11:30392942-30393285;Right=chr11:30410395-30410818
chr11	CG	SV	33494263	33494965	14	.	.	ID=2692;Type=deletion;Left=chr11:33494263-33494841+;Right=chr11:33494586-33494965+;Distance=323;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr11	CG	SV	33494263	33494841	14	+	.	ID=2692;Type=deletion;Left=chr11:33494263-33494841;Right=chr11:33494586-33494965
chr11	CG	SV	33494586	33494965	14	+	.	ID=2692;Type=deletion;Left=chr11:33494263-33494841;Right=chr11:33494586-33494965
chr11	CG	SV	34684699	34685603	18	.	.	ID=2691;Type=deletion;Left=chr11:34684699-34685053+;Right=chr11:34685194-34685603+;Distance=495;DiscordantMatePairAlignments=18;LeftRepeat=L1MA2:LINE:L1;RightRepeat=L1MA2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr11	CG	SV	34684699	34685053	18	+	.	ID=2691;Type=deletion;Left=chr11:34684699-34685053;Right=chr11:34685194-34685603
chr11	CG	SV	34685194	34685603	18	+	.	ID=2691;Type=deletion;Left=chr11:34684699-34685053;Right=chr11:34685194-34685603
chr11	CG	SV	43848420	43849344	18	.	.	ID=2687;Type=deletion;Left=chr11:43848420-43848842+;Right=chr11:43848756-43849344+;Distance=336;DiscordantMatePairAlignments=18;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs10525689 (chr11:43848420-43848756);Frequency=1.00
chr11	CG	SV	43848420	43848842	18	+	.	ID=2687;Type=deletion;Left=chr11:43848420-43848842;Right=chr11:43848756-43849344
chr11	CG	SV	43848756	43849344	18	+	.	ID=2687;Type=deletion;Left=chr11:43848420-43848842;Right=chr11:43848756-43849344
chr11	CG	SV	45386425	45388645	82	.	.	ID=2686;Type=deletion;Left=chr11:45386425-45387054+;Right=chr11:45388192-45388645+;Distance=1767;DiscordantMatePairAlignments=82;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs71940309 (chr11:45386422-45388189);Frequency=0.94
chr11	CG	SV	45386425	45387054	82	+	.	ID=2686;Type=deletion;Left=chr11:45386425-45387054;Right=chr11:45388192-45388645
chr11	CG	SV	45388192	45388645	82	+	.	ID=2686;Type=deletion;Left=chr11:45386425-45387054;Right=chr11:45388192-45388645
chr11	CG	SV	47844243	47845084	56	.	.	ID=2684;Type=deletion;Left=chr11:47844243-47844696+;Right=chr11:47844770-47845084+;Distance=527;DiscordantMatePairAlignments=56;LeftRepeat=AluSp:SINE:Alu;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr11	CG	SV	47844243	47844696	56	+	.	ID=2684;Type=deletion;Left=chr11:47844243-47844696;Right=chr11:47844770-47845084
chr11	CG	SV	47844770	47845084	56	+	.	ID=2684;Type=deletion;Left=chr11:47844243-47844696;Right=chr11:47844770-47845084
chr11	CG	SV	48076647	48077344	16	.	.	ID=2683;Type=deletion;Left=chr11:48076647-48077264+;Right=chr11:48076956-48077344+;Distance=309;DiscordantMatePairAlignments=16;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=;LeftGenes=NM_001098503:+;NM_002843:+;RightGenes=NM_001098503:+;NM_002843:+;XRef=rs72286428 (chr11:48076637-48076946);Frequency=0.94
chr11	CG	SV	48076647	48077264	16	+	.	ID=2683;Type=deletion;Left=chr11:48076647-48077264;Right=chr11:48076956-48077344
chr11	CG	SV	48076956	48077344	16	+	.	ID=2683;Type=deletion;Left=chr11:48076647-48077264;Right=chr11:48076956-48077344
chr11	CG	SV	48324097	48330641	83	.	.	ID=2681;Type=deletion;Left=chr11:48324097-48324644+;Right=chr11:48330278-48330641+;Distance=6181;DiscordantMatePairAlignments=83;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001005513:-;RightGenes=NM_001005513:-;XRef=rs71787435 (chr11:48324104-48330285);Frequency=1.00
chr11	CG	SV	48324097	48324644	83	+	.	ID=2681;Type=deletion;Left=chr11:48324097-48324644;Right=chr11:48330278-48330641
chr11	CG	SV	48330278	48330641	83	+	.	ID=2681;Type=deletion;Left=chr11:48324097-48324644;Right=chr11:48330278-48330641
chr11	CG	SV	57723924	78046672	28	.	.	ID=4363;Type=probable-inversion;Left=chr11:57723924-57724398+;Right=chr11:78046502-78046672-;Distance=20322748;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001098816:-;XRef=;Frequency=0.65
chr11	CG	SV	57723924	57724398	28	+	.	ID=4363;Type=probable-inversion;Left=chr11:57723924-57724398;Right=chr11:78046502-78046672
chr11	CG	SV	78046502	78046672	28	+	.	ID=4363;Type=probable-inversion;Left=chr11:57723924-57724398;Right=chr11:78046502-78046672
chr11	CG	SV	57923573	57925179	73	.	.	ID=2662;Type=deletion;Left=chr11:57923573-57923977+;Right=chr11:57924741-57925179+;Distance=1168;DiscordantMatePairAlignments=73;LeftRepeat=(TTTTA)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72147631 (chr11:57923575-57924743);Frequency=0.71
chr11	CG	SV	57923573	57923977	73	+	.	ID=2662;Type=deletion;Left=chr11:57923573-57923977;Right=chr11:57924741-57925179
chr11	CG	SV	57924741	57925179	73	+	.	ID=2662;Type=deletion;Left=chr11:57923573-57923977;Right=chr11:57924741-57925179
chr11	CG	SV	58350764	58353106	28	.	.	ID=2661;Type=deletion;Left=chr11:58350764-58351123+;Right=chr11:58352595-58353106+;Distance=1831;DiscordantMatePairAlignments=28;LeftRepeat=MER4A1-int:LTR:ERV1;Self chain;RightRepeat=MER4A1:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr11	CG	SV	58350764	58351123	28	+	.	ID=2661;Type=deletion;Left=chr11:58350764-58351123;Right=chr11:58352595-58353106
chr11	CG	SV	58352595	58353106	28	+	.	ID=2661;Type=deletion;Left=chr11:58350764-58351123;Right=chr11:58352595-58353106
chr11	CG	SV	58388350	58393544	35	.	.	ID=2660;Type=deletion;Left=chr11:58388350-58388904+;Right=chr11:58393131-58393544+;Distance=4781;DiscordantMatePairAlignments=35;LeftRepeat=L1M2:LINE:L1;Self chain;RightRepeat=LOR1-int:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	58388350	58388904	35	+	.	ID=2660;Type=deletion;Left=chr11:58388350-58388904;Right=chr11:58393131-58393544
chr11	CG	SV	58393131	58393544	35	+	.	ID=2660;Type=deletion;Left=chr11:58388350-58388904;Right=chr11:58393131-58393544
chr11	CG	SV	60328185	60328965	66	.	.	ID=2659;Type=deletion;Left=chr11:60328185-60328659+;Right=chr11:60328672-60328965+;Distance=487;DiscordantMatePairAlignments=66;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr11	CG	SV	60328185	60328659	66	+	.	ID=2659;Type=deletion;Left=chr11:60328185-60328659;Right=chr11:60328672-60328965
chr11	CG	SV	60328672	60328965	66	+	.	ID=2659;Type=deletion;Left=chr11:60328185-60328659;Right=chr11:60328672-60328965
chr11	CG	SV	63455485	63458520	19	.	.	ID=2657;Type=deletion;Left=chr11:63455485-63455946+;Right=chr11:63458230-63458520+;Distance=2745;DiscordantMatePairAlignments=19;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs67483435 (chr11:63455485-63458230);Frequency=1.00
chr11	CG	SV	63455485	63455946	19	+	.	ID=2657;Type=deletion;Left=chr11:63455485-63455946;Right=chr11:63458230-63458520
chr11	CG	SV	63458230	63458520	19	+	.	ID=2657;Type=deletion;Left=chr11:63455485-63455946;Right=chr11:63458230-63458520
chr11	CG	SV	65775399	65776466	59	.	.	ID=4364;Type=complex;Left=chr11:65775399-65775855+;Right=chr11:65776029-65776466-;Distance=1067;DiscordantMatePairAlignments=59;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr11	CG	SV	65775399	65775855	59	+	.	ID=4364;Type=complex;Left=chr11:65775399-65775855;Right=chr11:65776029-65776466
chr11	CG	SV	65776029	65776466	59	+	.	ID=4364;Type=complex;Left=chr11:65775399-65775855;Right=chr11:65776029-65776466
chr11	CG	SV	65775016	65776878	31	.	.	ID=283;Type=complex;Left=chr11:65775016-65775568-;Right=chr11:65776578-65776878+;Distance=1010;DiscordantMatePairAlignments=31;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr11	CG	SV	65775016	65775568	31	-	.	ID=283;Type=complex;Left=chr11:65775016-65775568;Right=chr11:65776578-65776878
chr11	CG	SV	65776578	65776878	31	-	.	ID=283;Type=complex;Left=chr11:65775016-65775568;Right=chr11:65776578-65776878
chr11	CG	SV	67086873	67089296	19	.	.	ID=2654;Type=deletion;Left=chr11:67086873-67087397+;Right=chr11:67089129-67089296+;Distance=2256;DiscordantMatePairAlignments=19;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	67086873	67087397	19	+	.	ID=2654;Type=deletion;Left=chr11:67086873-67087397;Right=chr11:67089129-67089296
chr11	CG	SV	67089129	67089296	19	+	.	ID=2654;Type=deletion;Left=chr11:67086873-67087397;Right=chr11:67089129-67089296
chr11	CG	SV	68487933	68488223	28	.	.	ID=1274;Type=tandem-duplication;Left=chr11:68487933-68488030-;Right=chr11:68488043-68488223-;Distance=193;DiscordantMatePairAlignments=28;LeftRepeat=MLT1K:LTR:MaLR;Self chain;Tandem period 33;Tandem period 99;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	68487933	68488030	28	-	.	ID=1274;Type=tandem-duplication;Left=chr11:68487933-68488030;Right=chr11:68488043-68488223
chr11	CG	SV	68488043	68488223	28	-	.	ID=1274;Type=tandem-duplication;Left=chr11:68487933-68488030;Right=chr11:68488043-68488223
chr11	CG	SV	69367690	69368315	20	.	.	ID=2651;Type=distal-duplication;Left=chr11:69367690-69368013+;Right=chr11:69367975-69368315+;Distance=285;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	69367690	69368013	20	+	.	ID=2651;Type=distal-duplication;Left=chr11:69367690-69368013;Right=chr11:69367975-69368315
chr11	CG	SV	69367975	69368315	20	+	.	ID=2651;Type=distal-duplication;Left=chr11:69367690-69368013;Right=chr11:69367975-69368315
chr11	CG	SV	69367653	69368221	12	.	.	ID=1273;Type=distal-duplication;Left=chr11:69367653-69367858-;Right=chr11:69368143-69368221-;Distance=363;DiscordantMatePairAlignments=12;LeftRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GAT;RightRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	69367653	69367858	12	-	.	ID=1273;Type=distal-duplication;Left=chr11:69367653-69367858;Right=chr11:69368143-69368221
chr11	CG	SV	69368143	69368221	12	-	.	ID=1273;Type=distal-duplication;Left=chr11:69367653-69367858;Right=chr11:69368143-69368221
chr11	CG	SV	69660203	69662573	55	.	.	ID=2650;Type=deletion;Left=chr11:69660203-69660734+;Right=chr11:69662138-69662573+;Distance=1935;DiscordantMatePairAlignments=55;LeftRepeat=Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=NM_018043:+;NR_030691:+;RightGenes=NM_018043:+;NR_030691:+;XRef=;Frequency=0.06
chr11	CG	SV	69660203	69660734	55	+	.	ID=2650;Type=deletion;Left=chr11:69660203-69660734;Right=chr11:69662138-69662573
chr11	CG	SV	69662138	69662573	55	+	.	ID=2650;Type=deletion;Left=chr11:69660203-69660734;Right=chr11:69662138-69662573
chr11	CG	SV	69894837	69895322	20	.	.	ID=1272;Type=tandem-duplication;Left=chr11:69894837-69895078-;Right=chr11:69895073-69895322-;Distance=244;DiscordantMatePairAlignments=20;LeftRepeat=L1MD:LINE:L1;Self chain;Tandem period 27;RightRepeat=L1M5:LINE:L1;Self chain;Tandem period 27;LeftGenes=NM_003626:+;NM_177423:+;RightGenes=NM_003626:+;NM_177423:+;XRef=;Frequency=1.00
chr11	CG	SV	69894837	69895078	20	-	.	ID=1272;Type=tandem-duplication;Left=chr11:69894837-69895078;Right=chr11:69895073-69895322
chr11	CG	SV	69895073	69895322	20	-	.	ID=1272;Type=tandem-duplication;Left=chr11:69894837-69895078;Right=chr11:69895073-69895322
chr11	CG	SV	81534058	81541398	24	.	.	ID=2648;Type=deletion;Left=chr11:81534058-81534488+;Right=chr11:81540993-81541398+;Distance=6935;DiscordantMatePairAlignments=24;LeftRepeat=L1MCb:LINE:L1;Self chain;RightRepeat=L1ME1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr11	CG	SV	81534058	81534488	24	+	.	ID=2648;Type=deletion;Left=chr11:81534058-81534488;Right=chr11:81540993-81541398
chr11	CG	SV	81540993	81541398	24	+	.	ID=2648;Type=deletion;Left=chr11:81534058-81534488;Right=chr11:81540993-81541398
chr11	CG	SV	84129166	84258079	42	.	.	ID=1268;Type=tandem-duplication;Left=chr11:84129166-84129465-;Right=chr11:84257689-84258079-;Distance=128614;DiscordantMatePairAlignments=42;LeftRepeat=L1M2c:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_001142699:-;NM_001364:-;RightGenes=NM_001142699:-;NM_001364:-;XRef=;Frequency=0.00
chr11	CG	SV	84129166	84129465	42	-	.	ID=1268;Type=tandem-duplication;Left=chr11:84129166-84129465;Right=chr11:84257689-84258079
chr11	CG	SV	84257689	84258079	42	-	.	ID=1268;Type=tandem-duplication;Left=chr11:84129166-84129465;Right=chr11:84257689-84258079
chr11	CG	SV	85963609	85965079	69	.	.	ID=2647;Type=deletion;Left=chr11:85963609-85964059+;Right=chr11:85964370-85965079+;Distance=761;DiscordantMatePairAlignments=69;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001014811:-;NM_001161586:-;NM_006680:-;RightGenes=NM_001014811:-;NM_001161586:-;NM_006680:-;XRef=rs71790699 (chr11:85963609-85964370);Frequency=0.18
chr11	CG	SV	85963609	85964059	69	+	.	ID=2647;Type=deletion;Left=chr11:85963609-85964059;Right=chr11:85964370-85965079
chr11	CG	SV	85964370	85965079	69	+	.	ID=2647;Type=deletion;Left=chr11:85963609-85964059;Right=chr11:85964370-85965079
chr11	CG	SV	89833356	89836145	59	.	.	ID=2645;Type=deletion;Left=chr11:89833356-89833747+;Right=chr11:89835647-89836145+;Distance=2291;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=L1MB1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr11	CG	SV	89833356	89833747	59	+	.	ID=2645;Type=deletion;Left=chr11:89833356-89833747;Right=chr11:89835647-89836145
chr11	CG	SV	89835647	89836145	59	+	.	ID=2645;Type=deletion;Left=chr11:89833356-89833747;Right=chr11:89835647-89836145
chr11	CG	SV	97753418	97754333	30	.	.	ID=2641;Type=deletion;Left=chr11:97753418-97753879+;Right=chr11:97753812-97754333+;Distance=394;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67075251 (chr11:97753418-97753812);Frequency=0.59
chr11	CG	SV	97753418	97753879	30	+	.	ID=2641;Type=deletion;Left=chr11:97753418-97753879;Right=chr11:97753812-97754333
chr11	CG	SV	97753812	97754333	30	+	.	ID=2641;Type=deletion;Left=chr11:97753418-97753879;Right=chr11:97753812-97754333
chr11	CG	SV	99195693	99196517	67	.	.	ID=4362;Type=probable-inversion;Left=chr11:99195693-99196073+;Right=chr11:99196147-99196517-;Distance=824;DiscordantMatePairAlignments=67;LeftRepeat=;RightRepeat=;LeftGenes=NM_014361:+;NM_175566:+;RightGenes=NM_014361:+;NM_175566:+;XRef=;Frequency=1.00
chr11	CG	SV	99195693	99196073	67	+	.	ID=4362;Type=probable-inversion;Left=chr11:99195693-99196073;Right=chr11:99196147-99196517
chr11	CG	SV	99196147	99196517	67	+	.	ID=4362;Type=probable-inversion;Left=chr11:99195693-99196073;Right=chr11:99196147-99196517
chr11	CG	SV	103515693	103516476	13	.	.	ID=2634;Type=deletion;Left=chr11:103515693-103516233+;Right=chr11:103516037-103516476+;Distance=344;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_025208:-;NM_033135:-;RightGenes=NM_025208:-;NM_033135:-;XRef=rs67756655 (chr11:103515683-103516027);Frequency=0.88
chr11	CG	SV	103515693	103516233	13	+	.	ID=2634;Type=deletion;Left=chr11:103515693-103516233;Right=chr11:103516037-103516476
chr11	CG	SV	103516037	103516476	13	+	.	ID=2634;Type=deletion;Left=chr11:103515693-103516233;Right=chr11:103516037-103516476
chr11	CG	SV	103772961	103778911	64	.	.	ID=2633;Type=deletion;Left=chr11:103772961-103773342+;Right=chr11:103778442-103778911+;Distance=5481;DiscordantMatePairAlignments=64;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67498645 (chr11:103772958-103778439);Frequency=0.88
chr11	CG	SV	103772961	103773342	64	+	.	ID=2633;Type=deletion;Left=chr11:103772961-103773342;Right=chr11:103778442-103778911
chr11	CG	SV	103778442	103778911	64	+	.	ID=2633;Type=deletion;Left=chr11:103772961-103773342;Right=chr11:103778442-103778911
chr11	CG	SV	113930124	113937611	97	.	.	ID=2631;Type=deletion;Left=chr11:113930124-113930660+;Right=chr11:113937141-113937611+;Distance=7017;DiscordantMatePairAlignments=97;LeftRepeat=MLT1J:LTR:MaLR;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_152315:-;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	113930124	113930660	97	+	.	ID=2631;Type=deletion;Left=chr11:113930124-113930660;Right=chr11:113937141-113937611
chr11	CG	SV	113937141	113937611	97	+	.	ID=2631;Type=deletion;Left=chr11:113930124-113930660;Right=chr11:113937141-113937611
chr11	CG	SV	113938523	130736054	114	.	.	ID=2630;Type=deletion;Left=chr11:113938523-113938976+;Right=chr11:130735676-130736054+;Distance=16797153;DiscordantMatePairAlignments=114;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	113938523	113938976	114	+	.	ID=2630;Type=deletion;Left=chr11:113938523-113938976;Right=chr11:130735676-130736054
chr11	CG	SV	130735676	130736054	114	+	.	ID=2630;Type=deletion;Left=chr11:113938523-113938976;Right=chr11:130735676-130736054
chr11	CG	SV	121852806	121854984	166	.	.	ID=2629;Type=deletion;Left=chr11:121852806-121853236+;Right=chr11:121854510-121854984+;Distance=1704;DiscordantMatePairAlignments=166;LeftRepeat=L1HS:LINE:L1;RightRepeat=GA-rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	121852806	121853236	166	+	.	ID=2629;Type=deletion;Left=chr11:121852806-121853236;Right=chr11:121854510-121854984
chr11	CG	SV	121854510	121854984	166	+	.	ID=2629;Type=deletion;Left=chr11:121852806-121853236;Right=chr11:121854510-121854984
chr11	CG	SV	122515772	122737894	80	.	.	ID=1257;Type=tandem-duplication;Left=chr11:122515772-122516385-;Right=chr11:122737422-122737894-;Distance=221509;DiscordantMatePairAlignments=80;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_024769:-;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	122515772	122516385	80	-	.	ID=1257;Type=tandem-duplication;Left=chr11:122515772-122516385;Right=chr11:122737422-122737894
chr11	CG	SV	122737422	122737894	80	-	.	ID=1257;Type=tandem-duplication;Left=chr11:122515772-122516385;Right=chr11:122737422-122737894
chr11	CG	SV	126007804	126007877	27	.	.	ID=4354;Type=probable-inversion;Left=chr11:126007804-126008153+;Right=chr11:126007793-126007877-;Distance=73;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=;LeftGenes=NM_001161707:-;NM_032531:-;RightGenes=NM_001161707:-;NM_032531:-;XRef=;Frequency=1.00
chr11	CG	SV	126007804	126008153	27	+	.	ID=4354;Type=probable-inversion;Left=chr11:126007804-126008153;Right=chr11:126007793-126007877
chr11	CG	SV	126007793	126007877	27	+	.	ID=4354;Type=probable-inversion;Left=chr11:126007804-126008153;Right=chr11:126007793-126007877
chr11	CG	SV	128518725	128520941	61	.	.	ID=2627;Type=deletion;Left=chr11:128518725-128519065+;Right=chr11:128520492-128520941+;Distance=1767;DiscordantMatePairAlignments=61;LeftRepeat=MER44C:DNA:MER2_type;RightRepeat=;LeftGenes=NM_001142685:-;RightGenes=NM_001142685:-;XRef=;Frequency=0.29
chr11	CG	SV	128518725	128519065	61	+	.	ID=2627;Type=deletion;Left=chr11:128518725-128519065;Right=chr11:128520492-128520941
chr11	CG	SV	128520492	128520941	61	+	.	ID=2627;Type=deletion;Left=chr11:128518725-128519065;Right=chr11:128520492-128520941
chr11	CG	SV	129730891	129735936	14	.	.	ID=2626;Type=deletion;Left=chr11:129730891-129731353+;Right=chr11:129735616-129735936+;Distance=4725;DiscordantMatePairAlignments=14;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	129730891	129731353	14	+	.	ID=2626;Type=deletion;Left=chr11:129730891-129731353;Right=chr11:129735616-129735936
chr11	CG	SV	129735616	129735936	14	+	.	ID=2626;Type=deletion;Left=chr11:129730891-129731353;Right=chr11:129735616-129735936
chr11	CG	SV	131588836	131589671	22	.	.	ID=2625;Type=deletion;Left=chr11:131588836-131589291+;Right=chr11:131589150-131589671+;Distance=314;DiscordantMatePairAlignments=22;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001048209:+;NM_001144058:+;NM_001144059:+;NM_016522:+;RightGenes=NM_001048209:+;NM_001144058:+;NM_001144059:+;NM_016522:+;XRef=;Frequency=0.65
chr11	CG	SV	131588836	131589291	22	+	.	ID=2625;Type=deletion;Left=chr11:131588836-131589291;Right=chr11:131589150-131589671
chr11	CG	SV	131589150	131589671	22	+	.	ID=2625;Type=deletion;Left=chr11:131588836-131589291;Right=chr11:131589150-131589671
chr11	CG	SV	134110459	134111557	55	.	.	ID=2623;Type=deletion;Left=chr11:134110459-134111042+;Right=chr11:134111071-134111557+;Distance=612;DiscordantMatePairAlignments=55;LeftRepeat=Self chain;Tandem period 36;RightRepeat=Self chain;Tandem period 36;LeftGenes=;RightGenes=;XRef=rs67758116 (chr11:134110307-134110991);Frequency=0.29
chr11	CG	SV	134110459	134111042	55	+	.	ID=2623;Type=deletion;Left=chr11:134110459-134111042;Right=chr11:134111071-134111557
chr11	CG	SV	134111071	134111557	55	+	.	ID=2623;Type=deletion;Left=chr11:134110459-134111042;Right=chr11:134111071-134111557
chr12	CG	SV	899176	900203	24	.	.	ID=2621;Type=deletion;Left=chr12:899176-899774+;Right=chr12:899985-900203+;Distance=809;DiscordantMatePairAlignments=24;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_134424:-;RightGenes=NM_134424:-;XRef=;Frequency=0.82
chr12	CG	SV	899176	899774	24	+	.	ID=2621;Type=deletion;Left=chr12:899176-899774;Right=chr12:899985-900203
chr12	CG	SV	899985	900203	24	+	.	ID=2621;Type=deletion;Left=chr12:899176-899774;Right=chr12:899985-900203
chr12	CG	SV	4952612	4953680	57	.	.	ID=2617;Type=deletion;Left=chr12:4952612-4953018+;Right=chr12:4953432-4953680+;Distance=820;DiscordantMatePairAlignments=57;LeftRepeat=Self chain;Tandem period 41;RightRepeat=Self chain;Tandem period 41;LeftGenes=;RightGenes=;XRef=rs71064124 (chr12:4952495-4953234);Frequency=1.00
chr12	CG	SV	4952612	4953018	57	+	.	ID=2617;Type=deletion;Left=chr12:4952612-4953018;Right=chr12:4953432-4953680
chr12	CG	SV	4953432	4953680	57	+	.	ID=2617;Type=deletion;Left=chr12:4952612-4953018;Right=chr12:4953432-4953680
chr12	CG	SV	6718000	6719171	17	.	.	ID=2616;Type=deletion;Left=chr12:6718000-6718413+;Right=chr12:6718785-6719171+;Distance=785;DiscordantMatePairAlignments=17;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	6718000	6718413	17	+	.	ID=2616;Type=deletion;Left=chr12:6718000-6718413;Right=chr12:6718785-6719171
chr12	CG	SV	6718785	6719171	17	+	.	ID=2616;Type=deletion;Left=chr12:6718000-6718413;Right=chr12:6718785-6719171
chr12	CG	SV	8908363	8909604	34	.	.	ID=2614;Type=deletion;Left=chr12:8908363-8908896+;Right=chr12:8909389-8909604+;Distance=1026;DiscordantMatePairAlignments=34;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=NM_144670:+;RightGenes=NM_144670:+;XRef=rs71042150 (chr12:8908119-8909146);Frequency=1.00
chr12	CG	SV	8908363	8908896	34	+	.	ID=2614;Type=deletion;Left=chr12:8908363-8908896;Right=chr12:8909389-8909604
chr12	CG	SV	8909389	8909604	34	+	.	ID=2614;Type=deletion;Left=chr12:8908363-8908896;Right=chr12:8909389-8909604
chr12	CG	SV	11083714	11109654	12	.	.	ID=2613;Type=deletion;Left=chr12:11083714-11084054+;Right=chr12:11109331-11109654+;Distance=25617;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;RightRepeat=L1MEe:LINE:L1;Self chain;LeftGenes=NM_001098538:-;NM_006250:-;RightGenes=NM_001098538:-;NM_006250:-;XRef=;Frequency=0.59
chr12	CG	SV	11083714	11084054	12	+	.	ID=2613;Type=deletion;Left=chr12:11083714-11084054;Right=chr12:11109331-11109654
chr12	CG	SV	11109331	11109654	12	+	.	ID=2613;Type=deletion;Left=chr12:11083714-11084054;Right=chr12:11109331-11109654
chr12	CG	SV	12435767	12438201	39	.	.	ID=278;Type=distal-duplication;Left=chr12:12435767-12436120-;Right=chr12:12437888-12438201+;Distance=1768;DiscordantMatePairAlignments=39;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_058169:+;RightGenes=NM_058169:+;XRef=;Frequency=1.00
chr12	CG	SV	12435767	12436120	39	-	.	ID=278;Type=distal-duplication;Left=chr12:12435767-12436120;Right=chr12:12437888-12438201
chr12	CG	SV	12437888	12438201	39	-	.	ID=278;Type=distal-duplication;Left=chr12:12435767-12436120;Right=chr12:12437888-12438201
chr12	CG	SV	12436200	12437784	43	.	.	ID=4351;Type=distal-duplication;Left=chr12:12436200-12436542+;Right=chr12:12437431-12437784-;Distance=1584;DiscordantMatePairAlignments=43;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_058169:+;RightGenes=NM_058169:+;XRef=;Frequency=1.00
chr12	CG	SV	12436200	12436542	43	+	.	ID=4351;Type=distal-duplication;Left=chr12:12436200-12436542;Right=chr12:12437431-12437784
chr12	CG	SV	12437431	12437784	43	+	.	ID=4351;Type=distal-duplication;Left=chr12:12436200-12436542;Right=chr12:12437431-12437784
chr12	CG	SV	16311390	16313069	76	.	.	ID=2610;Type=deletion;Left=chr12:16311390-16311793+;Right=chr12:16312550-16313069+;Distance=1160;DiscordantMatePairAlignments=76;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67843530 (chr12:16311390-16312549);Frequency=0.59
chr12	CG	SV	16311390	16311793	76	+	.	ID=2610;Type=deletion;Left=chr12:16311390-16311793;Right=chr12:16312550-16313069
chr12	CG	SV	16312550	16313069	76	+	.	ID=2610;Type=deletion;Left=chr12:16311390-16311793;Right=chr12:16312550-16313069
chr12	CG	SV	24832196	24833520	258	.	.	ID=2602;Type=deletion;Left=chr12:24832196-24832610+;Right=chr12:24832898-24833520+;Distance=702;DiscordantMatePairAlignments=258;LeftRepeat=LTR16A:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr12	CG	SV	24832196	24832610	258	+	.	ID=2602;Type=deletion;Left=chr12:24832196-24832610;Right=chr12:24832898-24833520
chr12	CG	SV	24832898	24833520	258	+	.	ID=2602;Type=deletion;Left=chr12:24832196-24832610;Right=chr12:24832898-24833520
chr12	CG	SV	25847094	124367554	25	.	.	ID=273;Type=complex;Left=chr12:25847094-25847393-;Right=chr12:124367100-124367554+;Distance=98519707;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	25847094	25847393	25	-	.	ID=273;Type=complex;Left=chr12:25847094-25847393;Right=chr12:124367100-124367554
chr12	CG	SV	124367100	124367554	25	-	.	ID=273;Type=complex;Left=chr12:25847094-25847393;Right=chr12:124367100-124367554
chr12	CG	SV	26402304	26403133	22	.	.	ID=2601;Type=deletion;Left=chr12:26402304-26402893+;Right=chr12:26402636-26403133+;Distance=332;DiscordantMatePairAlignments=22;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_002223:-;RightGenes=NM_002223:-;XRef=rs66549562 (chr12:26402287-26402619);Frequency=1.00
chr12	CG	SV	26402304	26402893	22	+	.	ID=2601;Type=deletion;Left=chr12:26402304-26402893;Right=chr12:26402636-26403133
chr12	CG	SV	26402636	26403133	22	+	.	ID=2601;Type=deletion;Left=chr12:26402304-26402893;Right=chr12:26402636-26403133
chr12	CG	SV	27325270	27325979	10	.	.	ID=2600;Type=deletion;Left=chr12:27325270-27325777+;Right=chr12:27325601-27325979+;Distance=331;DiscordantMatePairAlignments=10;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_015000:+;RightGenes=NM_015000:+;XRef=rs72425621 (chr12:27325254-27325585);Frequency=0.88
chr12	CG	SV	27325270	27325777	10	+	.	ID=2600;Type=deletion;Left=chr12:27325270-27325777;Right=chr12:27325601-27325979
chr12	CG	SV	27325601	27325979	10	+	.	ID=2600;Type=deletion;Left=chr12:27325270-27325777;Right=chr12:27325601-27325979
chr12	CG	SV	30262584	30263436	21	.	.	ID=2596;Type=deletion;Left=chr12:30262584-30263070+;Right=chr12:30263009-30263436+;Distance=425;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;RightRepeat=Self chain;Tigger3b:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr12	CG	SV	30262584	30263070	21	+	.	ID=2596;Type=deletion;Left=chr12:30262584-30263070;Right=chr12:30263009-30263436
chr12	CG	SV	30263009	30263436	21	+	.	ID=2596;Type=deletion;Left=chr12:30262584-30263070;Right=chr12:30263009-30263436
chr12	CG	SV	30369554	30372710	68	.	.	ID=2595;Type=deletion;Left=chr12:30369554-30369968+;Right=chr12:30372260-30372710+;Distance=2706;DiscordantMatePairAlignments=68;LeftRepeat=LTR41:LTR:ERVL;Self chain;RightRepeat=MER52C:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs66727704 (chr12:30369554-30372260);Frequency=0.41
chr12	CG	SV	30369554	30369968	68	+	.	ID=2595;Type=deletion;Left=chr12:30369554-30369968;Right=chr12:30372260-30372710
chr12	CG	SV	30372260	30372710	68	+	.	ID=2595;Type=deletion;Left=chr12:30369554-30369968;Right=chr12:30372260-30372710
chr12	CG	SV	42263727	42266391	205	.	.	ID=2584;Type=deletion;Left=chr12:42263727-42264143+;Right=chr12:42265827-42266391+;Distance=2100;DiscordantMatePairAlignments=205;LeftRepeat=L1P1:LINE:L1;RightRepeat=LTR52:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs67022104 (chr12:42263727-42265827);Frequency=1.00
chr12	CG	SV	42263727	42264143	205	+	.	ID=2584;Type=deletion;Left=chr12:42263727-42264143;Right=chr12:42265827-42266391
chr12	CG	SV	42265827	42266391	205	+	.	ID=2584;Type=deletion;Left=chr12:42263727-42264143;Right=chr12:42265827-42266391
chr12	CG	SV	44189420	44196694	117	.	.	ID=2583;Type=deletion;Left=chr12:44189420-44189884+;Right=chr12:44196206-44196694+;Distance=6786;DiscordantMatePairAlignments=117;LeftRepeat=MSTD-int:LTR:MaLR;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72102706 (chr12:44189420-44196206);Frequency=0.76
chr12	CG	SV	44189420	44189884	117	+	.	ID=2583;Type=deletion;Left=chr12:44189420-44189884;Right=chr12:44196206-44196694
chr12	CG	SV	44196206	44196694	117	+	.	ID=2583;Type=deletion;Left=chr12:44189420-44189884;Right=chr12:44196206-44196694
chr12	CG	SV	45361633	45362388	12	.	.	ID=2582;Type=deletion;Left=chr12:45361633-45362081+;Right=chr12:45361981-45362388+;Distance=348;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10529187 (chr12:45361617-45361965);Frequency=1.00
chr12	CG	SV	45361633	45362081	12	+	.	ID=2582;Type=deletion;Left=chr12:45361633-45362081;Right=chr12:45361981-45362388
chr12	CG	SV	45361981	45362388	12	+	.	ID=2582;Type=deletion;Left=chr12:45361633-45362081;Right=chr12:45361981-45362388
chr12	CG	SV	58808112	58811663	42	.	.	ID=2579;Type=deletion;Left=chr12:58808112-58808508+;Right=chr12:58811308-58811663+;Distance=3196;DiscordantMatePairAlignments=42;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71042189 (chr12:58808112-58811308);Frequency=0.59
chr12	CG	SV	58808112	58808508	42	+	.	ID=2579;Type=deletion;Left=chr12:58808112-58808508;Right=chr12:58811308-58811663
chr12	CG	SV	58811308	58811663	42	+	.	ID=2579;Type=deletion;Left=chr12:58808112-58808508;Right=chr12:58811308-58811663
chr12	CG	SV	64813918	64816571	46	.	.	ID=2578;Type=deletion;Left=chr12:64813918-64814371+;Right=chr12:64816159-64816571+;Distance=2241;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67481727 (chr12:64813918-64816159);Frequency=0.41
chr12	CG	SV	64813918	64814371	46	+	.	ID=2578;Type=deletion;Left=chr12:64813918-64814371;Right=chr12:64816159-64816571
chr12	CG	SV	64816159	64816571	46	+	.	ID=2578;Type=deletion;Left=chr12:64813918-64814371;Right=chr12:64816159-64816571
chr12	CG	SV	67833274	117217340	32	.	.	ID=1246;Type=tandem-duplication;Left=chr12:67833274-67833639-;Right=chr12:117216998-117217340-;Distance=49383701;DiscordantMatePairAlignments=32;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=NM_016281:-;XRef=;Frequency=0.59
chr12	CG	SV	67833274	67833639	32	-	.	ID=1246;Type=tandem-duplication;Left=chr12:67833274-67833639;Right=chr12:117216998-117217340
chr12	CG	SV	117216998	117217340	32	-	.	ID=1246;Type=tandem-duplication;Left=chr12:67833274-67833639;Right=chr12:117216998-117217340
chr12	CG	SV	69818626	69820563	83	.	.	ID=274;Type=distal-duplication;Left=chr12:69818626-69819060-;Right=chr12:69820021-69820563+;Distance=961;DiscordantMatePairAlignments=83;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_004616:-;RightGenes=NM_004616:-;XRef=;Frequency=0.65
chr12	CG	SV	69818626	69819060	83	-	.	ID=274;Type=distal-duplication;Left=chr12:69818626-69819060;Right=chr12:69820021-69820563
chr12	CG	SV	69820021	69820563	83	-	.	ID=274;Type=distal-duplication;Left=chr12:69818626-69819060;Right=chr12:69820021-69820563
chr12	CG	SV	69819541	69820019	115	.	.	ID=4348;Type=distal-duplication;Left=chr12:69819541-69819925+;Right=chr12:69819489-69820019-;Distance=478;DiscordantMatePairAlignments=115;LeftRepeat=(TGAA)n:Simple_repeat:Simple_repeat;RightRepeat=L2:LINE:L2;LeftGenes=NM_004616:-;RightGenes=NM_004616:-;XRef=;Frequency=0.65
chr12	CG	SV	69819541	69819925	115	+	.	ID=4348;Type=distal-duplication;Left=chr12:69819541-69819925;Right=chr12:69819489-69820019
chr12	CG	SV	69819489	69820019	115	+	.	ID=4348;Type=distal-duplication;Left=chr12:69819541-69819925;Right=chr12:69819489-69820019
chr12	CG	SV	70642873	70644823	16	.	.	ID=2576;Type=deletion;Left=chr12:70642873-70643247+;Right=chr12:70644437-70644823+;Distance=1564;DiscordantMatePairAlignments=16;LeftRepeat=AluSg/x:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;LeftGenes=NM_173353:+;RightGenes=NM_173353:+;XRef=rs72355357 (chr12:70642775-70644339);Frequency=1.00
chr12	CG	SV	70642873	70643247	16	+	.	ID=2576;Type=deletion;Left=chr12:70642873-70643247;Right=chr12:70644437-70644823
chr12	CG	SV	70644437	70644823	16	+	.	ID=2576;Type=deletion;Left=chr12:70642873-70643247;Right=chr12:70644437-70644823
chr12	CG	SV	78678369	78686722	61	.	.	ID=1249;Type=tandem-duplication;Left=chr12:78678369-78678839-;Right=chr12:78686410-78686722-;Distance=7883;DiscordantMatePairAlignments=61;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr12	CG	SV	78678369	78678839	61	-	.	ID=1249;Type=tandem-duplication;Left=chr12:78678369-78678839;Right=chr12:78686410-78686722
chr12	CG	SV	78686410	78686722	61	-	.	ID=1249;Type=tandem-duplication;Left=chr12:78678369-78678839;Right=chr12:78686410-78686722
chr12	CG	SV	80663850	80668893	70	.	.	ID=2574;Type=deletion;Left=chr12:80663850-80664292+;Right=chr12:80668454-80668893+;Distance=4604;DiscordantMatePairAlignments=70;LeftRepeat=;RightRepeat=;LeftGenes=NM_003625:-;RightGenes=NM_003625:-;XRef=;Frequency=0.12
chr12	CG	SV	80663850	80664292	70	+	.	ID=2574;Type=deletion;Left=chr12:80663850-80664292;Right=chr12:80668454-80668893
chr12	CG	SV	80668454	80668893	70	+	.	ID=2574;Type=deletion;Left=chr12:80663850-80664292;Right=chr12:80668454-80668893
chr12	CG	SV	85728929	85729970	12	.	.	ID=2570;Type=deletion;Left=chr12:85728929-85729309+;Right=chr12:85729832-85729970+;Distance=903;DiscordantMatePairAlignments=12;LeftRepeat=L1MDb:LINE:L1;RightRepeat=L1MDb:LINE:L1;LeftGenes=NM_013244:-;RightGenes=NM_013244:-;XRef=;Frequency=0.88
chr12	CG	SV	85728929	85729309	12	+	.	ID=2570;Type=deletion;Left=chr12:85728929-85729309;Right=chr12:85729832-85729970
chr12	CG	SV	85729832	85729970	12	+	.	ID=2570;Type=deletion;Left=chr12:85728929-85729309;Right=chr12:85729832-85729970
chr12	CG	SV	92368576	92370673	39	.	.	ID=1247;Type=tandem-duplication;Left=chr12:92368576-92368863-;Right=chr12:92370366-92370673-;Distance=1810;DiscordantMatePairAlignments=39;LeftRepeat=AluJ/FLAM:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr12	CG	SV	92368576	92368863	39	-	.	ID=1247;Type=tandem-duplication;Left=chr12:92368576-92368863;Right=chr12:92370366-92370673
chr12	CG	SV	92370366	92370673	39	-	.	ID=1247;Type=tandem-duplication;Left=chr12:92368576-92368863;Right=chr12:92370366-92370673
chr12	CG	SV	93768157	93768768	22	.	.	ID=2568;Type=deletion;Left=chr12:93768157-93768661+;Right=chr12:93768580-93768768+;Distance=423;DiscordantMatePairAlignments=22;LeftRepeat=L1MA4A:LINE:L1;RightRepeat=MSTB1:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr12	CG	SV	93768157	93768661	22	+	.	ID=2568;Type=deletion;Left=chr12:93768157-93768661;Right=chr12:93768580-93768768
chr12	CG	SV	93768580	93768768	22	+	.	ID=2568;Type=deletion;Left=chr12:93768157-93768661;Right=chr12:93768580-93768768
chr12	CG	SV	94757723	94761038	20	.	.	ID=2567;Type=deletion;Left=chr12:94757723-94758167+;Right=chr12:94760469-94761038+;Distance=2746;DiscordantMatePairAlignments=20;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66521162 (chr12:94757723-94760469);Frequency=0.94
chr12	CG	SV	94757723	94758167	20	+	.	ID=2567;Type=deletion;Left=chr12:94757723-94758167;Right=chr12:94760469-94761038
chr12	CG	SV	94760469	94761038	20	+	.	ID=2567;Type=deletion;Left=chr12:94757723-94758167;Right=chr12:94760469-94761038
chr12	CG	SV	102883565	124367578	48	.	.	ID=271;Type=complex;Left=chr12:102883565-102883759-;Right=chr12:124367100-124367578+;Distance=21483341;DiscordantMatePairAlignments=48;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_003211:+;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	102883565	102883759	48	-	.	ID=271;Type=complex;Left=chr12:102883565-102883759;Right=chr12:124367100-124367578
chr12	CG	SV	124367100	124367578	48	-	.	ID=271;Type=complex;Left=chr12:102883565-102883759;Right=chr12:124367100-124367578
chr12	CG	SV	104297655	104298385	13	.	.	ID=2556;Type=deletion;Left=chr12:104297655-104298185+;Right=chr12:104297979-104298385+;Distance=324;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs71843479 (chr12:104297644-104297968);Frequency=0.88
chr12	CG	SV	104297655	104298185	13	+	.	ID=2556;Type=deletion;Left=chr12:104297655-104298185;Right=chr12:104297979-104298385
chr12	CG	SV	104297979	104298385	13	+	.	ID=2556;Type=deletion;Left=chr12:104297655-104298185;Right=chr12:104297979-104298385
chr12	CG	SV	121576304	121577079	10	.	.	ID=2554;Type=deletion;Left=chr12:121576304-121576740+;Right=chr12:121576633-121577079+;Distance=329;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_023012:-;NM_198261:-;NM_198262:-;RightGenes=NM_023012:-;NM_198261:-;NM_198262:-;XRef=rs10529430 (chr12:121576291-121576620);Frequency=0.82
chr12	CG	SV	121576304	121576740	10	+	.	ID=2554;Type=deletion;Left=chr12:121576304-121576740;Right=chr12:121576633-121577079
chr12	CG	SV	121576633	121577079	10	+	.	ID=2554;Type=deletion;Left=chr12:121576304-121576740;Right=chr12:121576633-121577079
chr12	CG	SV	123024520	123062450	14	.	.	ID=2551;Type=deletion;Left=chr12:123024520-123024635+;Right=chr12:123062043-123062450+;Distance=37523;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_152437:+;RightGenes=NM_152437:+;XRef=;Frequency=0.25
chr12	CG	SV	123024520	123024635	14	+	.	ID=2551;Type=deletion;Left=chr12:123024520-123024635;Right=chr12:123062043-123062450
chr12	CG	SV	123062043	123062450	14	+	.	ID=2551;Type=deletion;Left=chr12:123024520-123024635;Right=chr12:123062043-123062450
chr12	CG	SV	125349462	125356077	133	.	.	ID=2540;Type=deletion;Left=chr12:125349462-125349961+;Right=chr12:125355556-125356077+;Distance=6094;DiscordantMatePairAlignments=133;LeftRepeat=MSTB1:LTR:MaLR;Self chain;RightRepeat=MSTB1:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr12	CG	SV	125349462	125349961	133	+	.	ID=2540;Type=deletion;Left=chr12:125349462-125349961;Right=chr12:125355556-125356077
chr12	CG	SV	125355556	125356077	133	+	.	ID=2540;Type=deletion;Left=chr12:125349462-125349961;Right=chr12:125355556-125356077
chr12	CG	SV	128626256	128626904	10	.	.	ID=2538;Type=deletion;Left=chr12:128626256-128626913+;Right=chr12:128626587-128626904+;Distance=331;DiscordantMatePairAlignments=10;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_133448:-;RightGenes=NM_133448:-;XRef=rs68194414 (chr12:128626240-128626571);Frequency=0.94
chr12	CG	SV	128626256	128626913	10	+	.	ID=2538;Type=deletion;Left=chr12:128626256-128626913;Right=chr12:128626587-128626904
chr12	CG	SV	128626587	128626904	10	+	.	ID=2538;Type=deletion;Left=chr12:128626256-128626913;Right=chr12:128626587-128626904
chr12	CG	SV	129932863	129933631	31	.	.	ID=2536;Type=deletion;Left=chr12:129932863-129933401+;Right=chr12:129933407-129933631+;Distance=544;DiscordantMatePairAlignments=31;LeftRepeat=Self chain;Tandem period 134;Tandem period 68;RightRepeat=Self chain;Tandem period 134;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr12	CG	SV	129932863	129933401	31	+	.	ID=2536;Type=deletion;Left=chr12:129932863-129933401;Right=chr12:129933407-129933631
chr12	CG	SV	129933407	129933631	31	+	.	ID=2536;Type=deletion;Left=chr12:129932863-129933401;Right=chr12:129933407-129933631
chr12	CG	SV	131452469	131453163	27	.	.	ID=2535;Type=deletion;Left=chr12:131452469-131452995+;Right=chr12:131452823-131453163+;Distance=354;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;Tandem period 118;Tandem period 59;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72417838 (chr12:131452469-131452823);Frequency=0.88
chr12	CG	SV	131452469	131452995	27	+	.	ID=2535;Type=deletion;Left=chr12:131452469-131452995;Right=chr12:131452823-131453163
chr12	CG	SV	131452823	131453163	27	+	.	ID=2535;Type=deletion;Left=chr12:131452469-131452995;Right=chr12:131452823-131453163
chr13	CG	SV	24207559	24208206	10	.	.	ID=2529;Type=deletion;Left=chr13:24207559-24208080+;Right=chr13:24207931-24208206+;Distance=372;DiscordantMatePairAlignments=10;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72155763 (chr13:24207519-24207891);Frequency=0.24
chr13	CG	SV	24207559	24208080	10	+	.	ID=2529;Type=deletion;Left=chr13:24207559-24208080;Right=chr13:24207931-24208206
chr13	CG	SV	24207931	24208206	10	+	.	ID=2529;Type=deletion;Left=chr13:24207559-24208080;Right=chr13:24207931-24208206
chr13	CG	SV	25948044	25950685	12	.	.	ID=2527;Type=deletion;Left=chr13:25948044-25948357+;Right=chr13:25950189-25950685+;Distance=2145;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr13	CG	SV	25948044	25948357	12	+	.	ID=2527;Type=deletion;Left=chr13:25948044-25948357;Right=chr13:25950189-25950685
chr13	CG	SV	25950189	25950685	12	+	.	ID=2527;Type=deletion;Left=chr13:25948044-25948357;Right=chr13:25950189-25950685
chr13	CG	SV	26444524	26445655	16	.	.	ID=1235;Type=tandem-duplication;Left=chr13:26444524-26444923-;Right=chr13:26445534-26445655-;Distance=732;DiscordantMatePairAlignments=16;LeftRepeat=(CA)n:Simple_repeat:Simple_repeat;Tandem CA;Tandem period 9;RightRepeat=(CA)n:Simple_repeat:Simple_repeat;Tandem AC;Tandem ACACAC;Tandem period 13;Tandem period 9;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr13	CG	SV	26444524	26444923	16	-	.	ID=1235;Type=tandem-duplication;Left=chr13:26444524-26444923;Right=chr13:26445534-26445655
chr13	CG	SV	26445534	26445655	16	-	.	ID=1235;Type=tandem-duplication;Left=chr13:26444524-26444923;Right=chr13:26445534-26445655
chr13	CG	SV	27166143	27167623	16	.	.	ID=2526;Type=deletion;Left=chr13:27166143-27166519+;Right=chr13:27167052-27167623+;Distance=909;DiscordantMatePairAlignments=16;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1PA16:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr13	CG	SV	27166143	27166519	16	+	.	ID=2526;Type=deletion;Left=chr13:27166143-27166519;Right=chr13:27167052-27167623
chr13	CG	SV	27167052	27167623	16	+	.	ID=2526;Type=deletion;Left=chr13:27166143-27166519;Right=chr13:27167052-27167623
chr13	CG	SV	28852771	28853585	17	.	.	ID=2524;Type=deletion;Left=chr13:28852771-28853291+;Right=chr13:28853095-28853585+;Distance=324;DiscordantMatePairAlignments=17;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001033602:+;RightGenes=NM_001033602:+;XRef=rs67907214 (chr13:28852757-28853081);Frequency=0.94
chr13	CG	SV	28852771	28853291	17	+	.	ID=2524;Type=deletion;Left=chr13:28852771-28853291;Right=chr13:28853095-28853585
chr13	CG	SV	28853095	28853585	17	+	.	ID=2524;Type=deletion;Left=chr13:28852771-28853291;Right=chr13:28853095-28853585
chr13	CG	SV	30094958	30096279	115	.	.	ID=2523;Type=deletion;Left=chr13:30094958-30095439+;Right=chr13:30095770-30096279+;Distance=812;DiscordantMatePairAlignments=115;LeftRepeat=;RightRepeat=MER21B:LTR:ERV1;LeftGenes=NM_005800:+;RightGenes=NM_005800:+;XRef=;Frequency=0.00
chr13	CG	SV	30094958	30095439	115	+	.	ID=2523;Type=deletion;Left=chr13:30094958-30095439;Right=chr13:30095770-30096279
chr13	CG	SV	30095770	30096279	115	+	.	ID=2523;Type=deletion;Left=chr13:30094958-30095439;Right=chr13:30095770-30096279
chr13	CG	SV	37955318	37958654	45	.	.	ID=2518;Type=deletion;Left=chr13:37955318-37955676+;Right=chr13:37958204-37958654+;Distance=2886;DiscordantMatePairAlignments=45;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71695759 (chr13:37955315-37958201);Frequency=0.94
chr13	CG	SV	37955318	37955676	45	+	.	ID=2518;Type=deletion;Left=chr13:37955318-37955676;Right=chr13:37958204-37958654
chr13	CG	SV	37958204	37958654	45	+	.	ID=2518;Type=deletion;Left=chr13:37955318-37955676;Right=chr13:37958204-37958654
chr13	CG	SV	41844870	41845652	130	.	.	ID=1233;Type=tandem-duplication;Left=chr13:41844870-41845268-;Right=chr13:41845306-41845652-;Distance=384;DiscordantMatePairAlignments=130;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr13	CG	SV	41844870	41845268	130	-	.	ID=1233;Type=tandem-duplication;Left=chr13:41844870-41845268;Right=chr13:41845306-41845652
chr13	CG	SV	41845306	41845652	130	-	.	ID=1233;Type=tandem-duplication;Left=chr13:41844870-41845268;Right=chr13:41845306-41845652
chr13	CG	SV	41951318	41952351	52	.	.	ID=2516;Type=deletion;Left=chr13:41951318-41951771+;Right=chr13:41951962-41952351+;Distance=644;DiscordantMatePairAlignments=52;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72375475 (chr13:41951191-41951835);Frequency=0.29
chr13	CG	SV	41951318	41951771	52	+	.	ID=2516;Type=deletion;Left=chr13:41951318-41951771;Right=chr13:41951962-41952351
chr13	CG	SV	41951962	41952351	52	+	.	ID=2516;Type=deletion;Left=chr13:41951318-41951771;Right=chr13:41951962-41952351
chr13	CG	SV	42437803	42440008	262	.	.	ID=2515;Type=deletion;Left=chr13:42437803-42438251+;Right=chr13:42439456-42440008+;Distance=1653;DiscordantMatePairAlignments=262;LeftRepeat=;RightRepeat=;LeftGenes=NM_001002264:-;NM_033255:-;RightGenes=NM_001002264:-;NM_033255:-;XRef=rs67713275 (chr13:42437794-42439447);Frequency=0.82
chr13	CG	SV	42437803	42438251	262	+	.	ID=2515;Type=deletion;Left=chr13:42437803-42438251;Right=chr13:42439456-42440008
chr13	CG	SV	42439456	42440008	262	+	.	ID=2515;Type=deletion;Left=chr13:42437803-42438251;Right=chr13:42439456-42440008
chr13	CG	SV	44903455	44904061	18	.	.	ID=2514;Type=deletion;Left=chr13:44903455-44903936+;Right=chr13:44903792-44904061+;Distance=337;DiscordantMatePairAlignments=18;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	44903455	44903936	18	+	.	ID=2514;Type=deletion;Left=chr13:44903455-44903936;Right=chr13:44903792-44904061
chr13	CG	SV	44903792	44904061	18	+	.	ID=2514;Type=deletion;Left=chr13:44903455-44903936;Right=chr13:44903792-44904061
chr13	CG	SV	49967351	49973569	44	.	.	ID=2511;Type=deletion;Left=chr13:49967351-49967875+;Right=chr13:49973083-49973569+;Distance=5732;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;RightRepeat=MSTB-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67883993 (chr13:49967351-49973083);Frequency=0.94
chr13	CG	SV	49967351	49967875	44	+	.	ID=2511;Type=deletion;Left=chr13:49967351-49967875;Right=chr13:49973083-49973569
chr13	CG	SV	49973083	49973569	44	+	.	ID=2511;Type=deletion;Left=chr13:49967351-49967875;Right=chr13:49973083-49973569
chr13	CG	SV	60451037	60452280	26	.	.	ID=2509;Type=deletion;Left=chr13:60451037-60451417+;Right=chr13:60451869-60452280+;Distance=832;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=L1M3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr13	CG	SV	60451037	60451417	26	+	.	ID=2509;Type=deletion;Left=chr13:60451037-60451417;Right=chr13:60451869-60452280
chr13	CG	SV	60451869	60452280	26	+	.	ID=2509;Type=deletion;Left=chr13:60451037-60451417;Right=chr13:60451869-60452280
chr13	CG	SV	68813467	68816017	11	.	.	ID=2504;Type=deletion;Left=chr13:68813467-68813809+;Right=chr13:68815641-68816017+;Distance=2174;DiscordantMatePairAlignments=11;LeftRepeat=L1M1:LINE:L1;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	68813467	68813809	11	+	.	ID=2504;Type=deletion;Left=chr13:68813467-68813809;Right=chr13:68815641-68816017
chr13	CG	SV	68815641	68816017	11	+	.	ID=2504;Type=deletion;Left=chr13:68813467-68813809;Right=chr13:68815641-68816017
chr13	CG	SV	77662970	77666296	62	.	.	ID=2501;Type=deletion;Left=chr13:77662970-77663451+;Right=chr13:77665838-77666296+;Distance=2868;DiscordantMatePairAlignments=62;LeftRepeat=MER21B:LTR:ERV1;RightRepeat=L1MEc:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr13	CG	SV	77662970	77663451	62	+	.	ID=2501;Type=deletion;Left=chr13:77662970-77663451;Right=chr13:77665838-77666296
chr13	CG	SV	77665838	77666296	62	+	.	ID=2501;Type=deletion;Left=chr13:77662970-77663451;Right=chr13:77665838-77666296
chr13	CG	SV	77895652	77897142	34	.	.	ID=2500;Type=deletion;Left=chr13:77895652-77896116+;Right=chr13:77896762-77897142+;Distance=1110;DiscordantMatePairAlignments=34;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71729399 (chr13:77895641-77896751);Frequency=0.53
chr13	CG	SV	77895652	77896116	34	+	.	ID=2500;Type=deletion;Left=chr13:77895652-77896116;Right=chr13:77896762-77897142
chr13	CG	SV	77896762	77897142	34	+	.	ID=2500;Type=deletion;Left=chr13:77895652-77896116;Right=chr13:77896762-77897142
chr13	CG	SV	81254791	81255509	20	.	.	ID=262;Type=probable-inversion;Left=chr13:81254791-81254877-;Right=chr13:81254977-81255509+;Distance=100;DiscordantMatePairAlignments=20;LeftRepeat=HERVL40:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	81254791	81254877	20	-	.	ID=262;Type=probable-inversion;Left=chr13:81254791-81254877;Right=chr13:81254977-81255509
chr13	CG	SV	81254977	81255509	20	-	.	ID=262;Type=probable-inversion;Left=chr13:81254791-81254877;Right=chr13:81254977-81255509
chr13	CG	SV	89660856	89663328	63	.	.	ID=2496;Type=deletion;Left=chr13:89660856-89661289+;Right=chr13:89662811-89663328+;Distance=1955;DiscordantMatePairAlignments=63;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr13	CG	SV	89660856	89661289	63	+	.	ID=2496;Type=deletion;Left=chr13:89660856-89661289;Right=chr13:89662811-89663328
chr13	CG	SV	89662811	89663328	63	+	.	ID=2496;Type=deletion;Left=chr13:89660856-89661289;Right=chr13:89662811-89663328
chr13	CG	SV	92042632	92044499	58	.	.	ID=2494;Type=deletion;Left=chr13:92042632-92043049+;Right=chr13:92044026-92044499+;Distance=1394;DiscordantMatePairAlignments=58;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_004466:+;RightGenes=NM_004466:+;XRef=;Frequency=0.00
chr13	CG	SV	92042632	92043049	58	+	.	ID=2494;Type=deletion;Left=chr13:92042632-92043049;Right=chr13:92044026-92044499
chr13	CG	SV	92044026	92044499	58	+	.	ID=2494;Type=deletion;Left=chr13:92042632-92043049;Right=chr13:92044026-92044499
chr13	CG	SV	95431437	95432246	13	.	.	ID=2492;Type=deletion;Left=chr13:95431437-95431959+;Right=chr13:95431755-95432246+;Distance=318;DiscordantMatePairAlignments=13;LeftRepeat=AluYh9:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_020121:-;RightGenes=NM_020121:-;XRef=rs35900922 (chr13:95431423-95431741);Frequency=1.00
chr13	CG	SV	95431437	95431959	13	+	.	ID=2492;Type=deletion;Left=chr13:95431437-95431959;Right=chr13:95431755-95432246
chr13	CG	SV	95431755	95432246	13	+	.	ID=2492;Type=deletion;Left=chr13:95431437-95431959;Right=chr13:95431755-95432246
chr13	CG	SV	97302605	97303304	12	.	.	ID=1232;Type=tandem-duplication;Left=chr13:97302605-97302943-;Right=chr13:97303029-97303304-;Distance=361;DiscordantMatePairAlignments=12;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Tandem TGGA;RightRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Tandem GATG;Tandem period 12;Tandem period 8;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr13	CG	SV	97302605	97302943	12	-	.	ID=1232;Type=tandem-duplication;Left=chr13:97302605-97302943;Right=chr13:97303029-97303304
chr13	CG	SV	97303029	97303304	12	-	.	ID=1232;Type=tandem-duplication;Left=chr13:97302605-97302943;Right=chr13:97303029-97303304
chr13	CG	SV	98052256	98056875	30	.	.	ID=2490;Type=deletion;Left=chr13:98052256-98052735+;Right=chr13:98056525-98056875+;Distance=4269;DiscordantMatePairAlignments=30;LeftRepeat=AluSx:SINE:Alu;RightRepeat=(TA)n:Simple_repeat:Simple_repeat;Tandem ATATAT;Tandem period 30;LeftGenes=;RightGenes=;XRef=rs71085656 (chr13:98052256-98056525);Frequency=0.59
chr13	CG	SV	98052256	98052735	30	+	.	ID=2490;Type=deletion;Left=chr13:98052256-98052735;Right=chr13:98056525-98056875
chr13	CG	SV	98056525	98056875	30	+	.	ID=2490;Type=deletion;Left=chr13:98052256-98052735;Right=chr13:98056525-98056875
chr13	CG	SV	100692147	100694964	45	.	.	ID=2489;Type=deletion;Left=chr13:100692147-100692675+;Right=chr13:100694428-100694964+;Distance=2281;DiscordantMatePairAlignments=45;LeftRepeat=L1MEd:LINE:L1;RightRepeat=;LeftGenes=NM_052867:-;RightGenes=NM_052867:-;XRef=rs71085658 (chr13:100692147-100694428);Frequency=0.82
chr13	CG	SV	100692147	100692675	45	+	.	ID=2489;Type=deletion;Left=chr13:100692147-100692675;Right=chr13:100694428-100694964
chr13	CG	SV	100694428	100694964	45	+	.	ID=2489;Type=deletion;Left=chr13:100692147-100692675;Right=chr13:100694428-100694964
chr13	CG	SV	102729653	102730366	11	.	.	ID=2487;Type=deletion;Left=chr13:102729653-102730182+;Right=chr13:102729968-102730366+;Distance=315;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67914131 (chr13:102729644-102729959);Frequency=0.65
chr13	CG	SV	102729653	102730182	11	+	.	ID=2487;Type=deletion;Left=chr13:102729653-102730182;Right=chr13:102729968-102730366
chr13	CG	SV	102729968	102730366	11	+	.	ID=2487;Type=deletion;Left=chr13:102729653-102730182;Right=chr13:102729968-102730366
chr13	CG	SV	102889766	102890713	26	.	.	ID=2485;Type=deletion;Left=chr13:102889766-102889979+;Right=chr13:102890248-102890713+;Distance=482;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66669025 (chr13:102889766-102890248);Frequency=1.00
chr13	CG	SV	102889766	102889979	26	+	.	ID=2485;Type=deletion;Left=chr13:102889766-102889979;Right=chr13:102890248-102890713
chr13	CG	SV	102890248	102890713	26	+	.	ID=2485;Type=deletion;Left=chr13:102889766-102889979;Right=chr13:102890248-102890713
chr13	CG	SV	108159747	108161009	85	.	.	ID=2482;Type=deletion;Left=chr13:108159747-108160254+;Right=chr13:108160439-108161009+;Distance=692;DiscordantMatePairAlignments=85;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_015011:+;RightGenes=NM_015011:+;XRef=;Frequency=0.53
chr13	CG	SV	108159747	108160254	85	+	.	ID=2482;Type=deletion;Left=chr13:108159747-108160254;Right=chr13:108160439-108161009
chr13	CG	SV	108160439	108161009	85	+	.	ID=2482;Type=deletion;Left=chr13:108159747-108160254;Right=chr13:108160439-108161009
chr13	CG	SV	110502499	110503265	78	.	.	ID=2478;Type=deletion;Left=chr13:110502499-110503027+;Right=chr13:110502982-110503265+;Distance=483;DiscordantMatePairAlignments=78;LeftRepeat=Self chain;Tandem period 134;Tandem period 27;RightRepeat=MER39:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs71085666 (chr13:110502520-110502896);Frequency=0.94
chr13	CG	SV	110502499	110503027	78	+	.	ID=2478;Type=deletion;Left=chr13:110502499-110503027;Right=chr13:110502982-110503265
chr13	CG	SV	110502982	110503265	78	+	.	ID=2478;Type=deletion;Left=chr13:110502499-110503027;Right=chr13:110502982-110503265
chr13	CG	SV	111717768	111718731	14	.	.	ID=2477;Type=deletion;Left=chr13:111717768-111718317+;Right=chr13:111718344-111718731+;Distance=576;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 36;RightRepeat=L1MA9:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr13	CG	SV	111717768	111718317	14	+	.	ID=2477;Type=deletion;Left=chr13:111717768-111718317;Right=chr13:111718344-111718731
chr13	CG	SV	111718344	111718731	14	+	.	ID=2477;Type=deletion;Left=chr13:111717768-111718317;Right=chr13:111718344-111718731
chr13	CG	SV	112469233	112470159	19	.	.	ID=2476;Type=deletion;Left=chr13:112469233-112469708+;Right=chr13:112469869-112470159+;Distance=636;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;Tandem period 159;Tandem period 40;Tandem period 79;RightRepeat=Self chain;LeftGenes=NM_015205:+;NM_032189:+;RightGenes=NM_015205:+;NM_032189:+;XRef=;Frequency=0.12
chr13	CG	SV	112469233	112469708	19	+	.	ID=2476;Type=deletion;Left=chr13:112469233-112469708;Right=chr13:112469869-112470159
chr13	CG	SV	112469869	112470159	19	+	.	ID=2476;Type=deletion;Left=chr13:112469233-112469708;Right=chr13:112469869-112470159
chr13	CG	SV	114008694	114010528	144	.	.	ID=2475;Type=deletion;Left=chr13:114008694-114009192+;Right=chr13:114009982-114010528+;Distance=1288;DiscordantMatePairAlignments=144;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr13	CG	SV	114008694	114009192	144	+	.	ID=2475;Type=deletion;Left=chr13:114008694-114009192;Right=chr13:114009982-114010528
chr13	CG	SV	114009982	114010528	144	+	.	ID=2475;Type=deletion;Left=chr13:114008694-114009192;Right=chr13:114009982-114010528
chr14	CG	SV	21100019	21101982	50	.	.	ID=2473;Type=deletion;Left=chr14:21100019-21100599+;Right=chr14:21101665-21101982+;Distance=1646;DiscordantMatePairAlignments=50;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr14	CG	SV	21100019	21100599	50	+	.	ID=2473;Type=deletion;Left=chr14:21100019-21100599;Right=chr14:21101665-21101982
chr14	CG	SV	21101665	21101982	50	+	.	ID=2473;Type=deletion;Left=chr14:21100019-21100599;Right=chr14:21101665-21101982
chr14	CG	SV	21951507	21952664	179	.	.	ID=2472;Type=deletion;Left=chr14:21951507-21952077+;Right=chr14:21952100-21952664+;Distance=593;DiscordantMatePairAlignments=179;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66716556 (chr14:21951506-21952099);Frequency=0.94
chr14	CG	SV	21951507	21952077	179	+	.	ID=2472;Type=deletion;Left=chr14:21951507-21952077;Right=chr14:21952100-21952664
chr14	CG	SV	21952100	21952664	179	+	.	ID=2472;Type=deletion;Left=chr14:21951507-21952077;Right=chr14:21952100-21952664
chr14	CG	SV	22122064	22123897	147	.	.	ID=2471;Type=deletion;Left=chr14:22122064-22122370+;Right=chr14:22123393-22123897+;Distance=1329;DiscordantMatePairAlignments=147;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_001344:-;RightGenes=NM_001344:-;XRef=;Frequency=0.00
chr14	CG	SV	22122064	22122370	147	+	.	ID=2471;Type=deletion;Left=chr14:22122064-22122370;Right=chr14:22123393-22123897
chr14	CG	SV	22123393	22123897	147	+	.	ID=2471;Type=deletion;Left=chr14:22122064-22122370;Right=chr14:22123393-22123897
chr14	CG	SV	22174958	22177897	14	.	.	ID=2470;Type=deletion;Left=chr14:22174958-22175442+;Right=chr14:22177793-22177897+;Distance=2835;DiscordantMatePairAlignments=14;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr14	CG	SV	22174958	22175442	14	+	.	ID=2470;Type=deletion;Left=chr14:22174958-22175442;Right=chr14:22177793-22177897
chr14	CG	SV	22177793	22177897	14	+	.	ID=2470;Type=deletion;Left=chr14:22174958-22175442;Right=chr14:22177793-22177897
chr14	CG	SV	25353716	25355165	19	.	.	ID=2468;Type=deletion;Left=chr14:25353716-25354127+;Right=chr14:25354642-25355165+;Distance=926;DiscordantMatePairAlignments=19;LeftRepeat=L1PA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr14	CG	SV	25353716	25354127	19	+	.	ID=2468;Type=deletion;Left=chr14:25353716-25354127;Right=chr14:25354642-25355165
chr14	CG	SV	25354642	25355165	19	+	.	ID=2468;Type=deletion;Left=chr14:25353716-25354127;Right=chr14:25354642-25355165
chr14	CG	SV	28797800	28799096	95	.	.	ID=2467;Type=deletion;Left=chr14:28797800-28798199+;Right=chr14:28798564-28799096+;Distance=764;DiscordantMatePairAlignments=95;LeftRepeat=;RightRepeat=L1MC3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr14	CG	SV	28797800	28798199	95	+	.	ID=2467;Type=deletion;Left=chr14:28797800-28798199;Right=chr14:28798564-28799096
chr14	CG	SV	28798564	28799096	95	+	.	ID=2467;Type=deletion;Left=chr14:28797800-28798199;Right=chr14:28798564-28799096
chr14	CG	SV	39168152	39170339	68	.	.	ID=2462;Type=deletion;Left=chr14:39168152-39168693+;Right=chr14:39169974-39170339+;Distance=1822;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72037908 (chr14:39168142-39169964);Frequency=0.59
chr14	CG	SV	39168152	39168693	68	+	.	ID=2462;Type=deletion;Left=chr14:39168152-39168693;Right=chr14:39169974-39170339
chr14	CG	SV	39169974	39170339	68	+	.	ID=2462;Type=deletion;Left=chr14:39168152-39168693;Right=chr14:39169974-39170339
chr14	CG	SV	41556085	41556903	11	.	.	ID=2461;Type=deletion;Left=chr14:41556085-41556469+;Right=chr14:41556400-41556903+;Distance=315;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10529794 (chr14:41556085-41556400);Frequency=0.88
chr14	CG	SV	41556085	41556469	11	+	.	ID=2461;Type=deletion;Left=chr14:41556085-41556469;Right=chr14:41556400-41556903
chr14	CG	SV	41556400	41556903	11	+	.	ID=2461;Type=deletion;Left=chr14:41556085-41556469;Right=chr14:41556400-41556903
chr14	CG	SV	42442661	42443495	29	.	.	ID=2460;Type=deletion;Left=chr14:42442661-42443156+;Right=chr14:42443073-42443495+;Distance=412;DiscordantMatePairAlignments=29;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=L1MCa:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr14	CG	SV	42442661	42443156	29	+	.	ID=2460;Type=deletion;Left=chr14:42442661-42443156;Right=chr14:42443073-42443495
chr14	CG	SV	42443073	42443495	29	+	.	ID=2460;Type=deletion;Left=chr14:42442661-42443156;Right=chr14:42443073-42443495
chr14	CG	SV	45647688	45648465	13	.	.	ID=2459;Type=deletion;Left=chr14:45647688-45648144+;Right=chr14:45648008-45648465+;Distance=320;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71105263 (chr14:45647688-45648008);Frequency=1.00
chr14	CG	SV	45647688	45648144	13	+	.	ID=2459;Type=deletion;Left=chr14:45647688-45648144;Right=chr14:45648008-45648465
chr14	CG	SV	45648008	45648465	13	+	.	ID=2459;Type=deletion;Left=chr14:45647688-45648144;Right=chr14:45648008-45648465
chr14	CG	SV	49261482	49262106	34	.	.	ID=1226;Type=tandem-duplication;Left=chr14:49261482-49261790-;Right=chr14:49261756-49262106-;Distance=316;DiscordantMatePairAlignments=34;LeftRepeat=L3:LINE:CR1;RightRepeat=;LeftGenes=NM_172193:+;RightGenes=NM_172193:+;XRef=;Frequency=1.00
chr14	CG	SV	49261482	49261790	34	-	.	ID=1226;Type=tandem-duplication;Left=chr14:49261482-49261790;Right=chr14:49261756-49262106
chr14	CG	SV	49261756	49262106	34	-	.	ID=1226;Type=tandem-duplication;Left=chr14:49261482-49261790;Right=chr14:49261756-49262106
chr14	CG	SV	51448097	51449113	198	.	.	ID=2457;Type=deletion;Left=chr14:51448097-51448635+;Right=chr14:51448656-51449113+;Distance=559;DiscordantMatePairAlignments=198;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_053064:+;RightGenes=NM_053064:+;XRef=rs72381763 (chr14:51448094-51448653);Frequency=0.12
chr14	CG	SV	51448097	51448635	198	+	.	ID=2457;Type=deletion;Left=chr14:51448097-51448635;Right=chr14:51448656-51449113
chr14	CG	SV	51448656	51449113	198	+	.	ID=2457;Type=deletion;Left=chr14:51448097-51448635;Right=chr14:51448656-51449113
chr14	CG	SV	59411151	59413472	17	.	.	ID=2454;Type=deletion;Left=chr14:59411151-59411474+;Right=chr14:59412995-59413472+;Distance=1844;DiscordantMatePairAlignments=17;LeftRepeat=L1MA3:LINE:L1;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr14	CG	SV	59411151	59411474	17	+	.	ID=2454;Type=deletion;Left=chr14:59411151-59411474;Right=chr14:59412995-59413472
chr14	CG	SV	59412995	59413472	17	+	.	ID=2454;Type=deletion;Left=chr14:59411151-59411474;Right=chr14:59412995-59413472
chr14	CG	SV	64430147	64433765	157	.	.	ID=2452;Type=deletion;Left=chr14:64430147-64430697+;Right=chr14:64433301-64433765+;Distance=3154;DiscordantMatePairAlignments=157;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66717779 (chr14:64430139-64433293);Frequency=1.00
chr14	CG	SV	64430147	64430697	157	+	.	ID=2452;Type=deletion;Left=chr14:64430147-64430697;Right=chr14:64433301-64433765
chr14	CG	SV	64433301	64433765	157	+	.	ID=2452;Type=deletion;Left=chr14:64430147-64430697;Right=chr14:64433301-64433765
chr14	CG	SV	65327931	65328163	11	.	.	ID=1225;Type=tandem-duplication;Left=chr14:65327931-65328048-;Right=chr14:65328042-65328163-;Distance=115;DiscordantMatePairAlignments=11;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr14	CG	SV	65327931	65328048	11	-	.	ID=1225;Type=tandem-duplication;Left=chr14:65327931-65328048;Right=chr14:65328042-65328163
chr14	CG	SV	65328042	65328163	11	-	.	ID=1225;Type=tandem-duplication;Left=chr14:65327931-65328048;Right=chr14:65328042-65328163
chr14	CG	SV	67672995	67673904	73	.	.	ID=2450;Type=deletion;Left=chr14:67672995-67673455+;Right=chr14:67673693-67673904+;Distance=698;DiscordantMatePairAlignments=73;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_002877:+;NM_133509:+;NM_133510:+;RightGenes=NM_002877:+;NM_133509:+;NM_133510:+;XRef=rs67710758 (chr14:67672811-67673511);Frequency=0.94
chr14	CG	SV	67672995	67673455	73	+	.	ID=2450;Type=deletion;Left=chr14:67672995-67673455;Right=chr14:67673693-67673904
chr14	CG	SV	67673693	67673904	73	+	.	ID=2450;Type=deletion;Left=chr14:67672995-67673455;Right=chr14:67673693-67673904
chr14	CG	SV	69757592	69759548	30	.	.	ID=2449;Type=deletion;Left=chr14:69757592-69758002+;Right=chr14:69759213-69759548+;Distance=1621;DiscordantMatePairAlignments=30;LeftRepeat=L1M:LINE:L1;Self chain;RightRepeat=MER53:DNA:DNA;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr14	CG	SV	69757592	69758002	30	+	.	ID=2449;Type=deletion;Left=chr14:69757592-69758002;Right=chr14:69759213-69759548
chr14	CG	SV	69759213	69759548	30	+	.	ID=2449;Type=deletion;Left=chr14:69757592-69758002;Right=chr14:69759213-69759548
chr14	CG	SV	75883527	75884327	63	.	.	ID=2447;Type=complex;Left=chr14:75883527-75884074+;Right=chr14:75883962-75884327+;Distance=435;DiscordantMatePairAlignments=63;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66763096 (chr14:75883526-75883961);Frequency=0.59
chr14	CG	SV	75883527	75884074	63	+	.	ID=2447;Type=complex;Left=chr14:75883527-75884074;Right=chr14:75883962-75884327
chr14	CG	SV	75883962	75884327	63	+	.	ID=2447;Type=complex;Left=chr14:75883527-75884074;Right=chr14:75883962-75884327
chr14	CG	SV	75883527	75884536	44	.	.	ID=2448;Type=complex;Left=chr14:75883527-75883933+;Right=chr14:75883962-75884536+;Distance=435;DiscordantMatePairAlignments=44;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72100137 (chr14:75883527-75883962);Frequency=0.59
chr14	CG	SV	75883527	75883933	44	+	.	ID=2448;Type=complex;Left=chr14:75883527-75883933;Right=chr14:75883962-75884536
chr14	CG	SV	75883962	75884536	44	+	.	ID=2448;Type=complex;Left=chr14:75883527-75883933;Right=chr14:75883962-75884536
chr14	CG	SV	82705594	82706925	84	.	.	ID=2443;Type=deletion;Left=chr14:82705594-82706131+;Right=chr14:82706241-82706925+;Distance=647;DiscordantMatePairAlignments=84;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67488723 (chr14:82705606-82706253);Frequency=0.94
chr14	CG	SV	82705594	82706131	84	+	.	ID=2443;Type=deletion;Left=chr14:82705594-82706131;Right=chr14:82706241-82706925
chr14	CG	SV	82706241	82706925	84	+	.	ID=2443;Type=deletion;Left=chr14:82705594-82706131;Right=chr14:82706241-82706925
chr14	CG	SV	92995771	92996134	19	.	.	ID=4334;Type=probable-inversion;Left=chr14:92995771-92996001+;Right=chr14:92996060-92996134-;Distance=363;DiscordantMatePairAlignments=19;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=NM_020818:+;RightGenes=NM_020818:+;XRef=;Frequency=1.00
chr14	CG	SV	92995771	92996001	19	+	.	ID=4334;Type=probable-inversion;Left=chr14:92995771-92996001;Right=chr14:92996060-92996134
chr14	CG	SV	92996060	92996134	19	+	.	ID=4334;Type=probable-inversion;Left=chr14:92995771-92996001;Right=chr14:92996060-92996134
chr14	CG	SV	99914767	99915485	16	.	.	ID=2437;Type=deletion;Left=chr14:99914767-99915343+;Right=chr14:99915100-99915485+;Distance=333;DiscordantMatePairAlignments=16;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001161476:+;NM_024515:+;RightGenes=NM_001161476:+;NM_024515:+;XRef=rs68131155 (chr14:99914750-99915083);Frequency=0.94
chr14	CG	SV	99914767	99915343	16	+	.	ID=2437;Type=deletion;Left=chr14:99914767-99915343;Right=chr14:99915100-99915485
chr14	CG	SV	99915100	99915485	16	+	.	ID=2437;Type=deletion;Left=chr14:99914767-99915343;Right=chr14:99915100-99915485
chr14	CG	SV	100062574	100063066	18	.	.	ID=1223;Type=tandem-duplication;Left=chr14:100062574-100062801-;Right=chr14:100062949-100063066-;Distance=265;DiscordantMatePairAlignments=18;LeftRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;RightRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;LeftGenes=NM_001161476:+;NM_024515:+;RightGenes=NM_001161476:+;NM_024515:+;XRef=;Frequency=1.00
chr14	CG	SV	100062574	100062801	18	-	.	ID=1223;Type=tandem-duplication;Left=chr14:100062574-100062801;Right=chr14:100062949-100063066
chr14	CG	SV	100062949	100063066	18	-	.	ID=1223;Type=tandem-duplication;Left=chr14:100062574-100062801;Right=chr14:100062949-100063066
chr14	CG	SV	103432409	103432879	67	.	.	ID=1222;Type=tandem-duplication;Left=chr14:103432409-103432642-;Right=chr14:103432787-103432879-;Distance=237;DiscordantMatePairAlignments=67;LeftRepeat=Self chain;Tandem period 33;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	103432409	103432642	67	-	.	ID=1222;Type=tandem-duplication;Left=chr14:103432409-103432642;Right=chr14:103432787-103432879
chr14	CG	SV	103432787	103432879	67	-	.	ID=1222;Type=tandem-duplication;Left=chr14:103432409-103432642;Right=chr14:103432787-103432879
chr14	CG	SV	104345053	104346184	102	.	.	ID=2435;Type=deletion;Left=chr14:104345053-104345504+;Right=chr14:104345851-104346184+;Distance=798;DiscordantMatePairAlignments=102;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71803557 (chr14:104344945-104345705);Frequency=0.94
chr14	CG	SV	104345053	104345504	102	+	.	ID=2435;Type=deletion;Left=chr14:104345053-104345504;Right=chr14:104345851-104346184
chr14	CG	SV	104345851	104346184	102	+	.	ID=2435;Type=deletion;Left=chr14:104345053-104345504;Right=chr14:104345851-104346184
chr14	CG	SV	105119732	105120365	29	.	.	ID=1219;Type=tandem-duplication;Left=chr14:105119732-105120046-;Right=chr14:105120137-105120365-;Distance=319;DiscordantMatePairAlignments=29;LeftRepeat=SegDup;Self chain;Tandem period 20;RightRepeat=SegDup;Self chain;Tandem period 20;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	105119732	105120046	29	-	.	ID=1219;Type=tandem-duplication;Left=chr14:105119732-105120046;Right=chr14:105120137-105120365
chr14	CG	SV	105120137	105120365	29	-	.	ID=1219;Type=tandem-duplication;Left=chr14:105119732-105120046;Right=chr14:105120137-105120365
chr14	CG	SV	106232607	106232836	50	.	.	ID=1213;Type=tandem-duplication;Left=chr14:106232607-106232718-;Right=chr14:106232723-106232836-;Distance=118;DiscordantMatePairAlignments=50;LeftRepeat=Self chain;Tandem period 59;RightRepeat=Self chain;Tandem period 59;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	106232607	106232718	50	-	.	ID=1213;Type=tandem-duplication;Left=chr14:106232607-106232718;Right=chr14:106232723-106232836
chr14	CG	SV	106232723	106232836	50	-	.	ID=1213;Type=tandem-duplication;Left=chr14:106232607-106232718;Right=chr14:106232723-106232836
chr15	CG	SV	19838217	19845984	11	.	.	ID=2430;Type=deletion;Left=chr15:19838217-19838535+;Right=chr15:19845457-19845984+;Distance=7240;DiscordantMatePairAlignments=11;LeftRepeat=L1PA16:LINE:L1;SegDup;Self chain;RightRepeat=SegDup;Self chain;Tandem period 18;LeftGenes=NR_015416:+;RightGenes=NR_015416:+;XRef=;Frequency=0.59
chr15	CG	SV	19838217	19838535	11	+	.	ID=2430;Type=deletion;Left=chr15:19838217-19838535;Right=chr15:19845457-19845984
chr15	CG	SV	19845457	19845984	11	+	.	ID=2430;Type=deletion;Left=chr15:19838217-19838535;Right=chr15:19845457-19845984
chr15	CG	SV	22390426	22391235	15	.	.	ID=2428;Type=deletion;Left=chr15:22390426-22390861+;Right=chr15:22390748-22391235+;Distance=322;DiscordantMatePairAlignments=15;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=MSTC-int:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=rs71114009 (chr15:22390410-22390732);Frequency=0.47
chr15	CG	SV	22390426	22390861	15	+	.	ID=2428;Type=deletion;Left=chr15:22390426-22390861;Right=chr15:22390748-22391235
chr15	CG	SV	22390748	22391235	15	+	.	ID=2428;Type=deletion;Left=chr15:22390426-22390861;Right=chr15:22390748-22391235
chr15	CG	SV	22884267	22885644	10	.	.	ID=2427;Type=deletion;Left=chr15:22884267-22884807+;Right=chr15:22885409-22885644+;Distance=1142;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr15	CG	SV	22884267	22884807	10	+	.	ID=2427;Type=deletion;Left=chr15:22884267-22884807;Right=chr15:22885409-22885644
chr15	CG	SV	22885409	22885644	10	+	.	ID=2427;Type=deletion;Left=chr15:22884267-22884807;Right=chr15:22885409-22885644
chr15	CG	SV	23497292	23504598	58	.	.	ID=1208;Type=tandem-duplication;Left=chr15:23497292-23497702-;Right=chr15:23504115-23504598-;Distance=6896;DiscordantMatePairAlignments=58;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_024490:-;RightGenes=NM_024490:-;XRef=;Frequency=0.00
chr15	CG	SV	23497292	23497702	58	-	.	ID=1208;Type=tandem-duplication;Left=chr15:23497292-23497702;Right=chr15:23504115-23504598
chr15	CG	SV	23504115	23504598	58	-	.	ID=1208;Type=tandem-duplication;Left=chr15:23497292-23497702;Right=chr15:23504115-23504598
chr15	CG	SV	23538188	23542711	33	.	.	ID=1207;Type=tandem-duplication;Left=chr15:23538188-23538771-;Right=chr15:23542414-23542711-;Distance=3940;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;RightRepeat=L1MEd:LINE:L1;Self chain;LeftGenes=NM_024490:-;RightGenes=NM_024490:-;XRef=;Frequency=0.00
chr15	CG	SV	23538188	23538771	33	-	.	ID=1207;Type=tandem-duplication;Left=chr15:23538188-23538771;Right=chr15:23542414-23542711
chr15	CG	SV	23542414	23542711	33	-	.	ID=1207;Type=tandem-duplication;Left=chr15:23538188-23538771;Right=chr15:23542414-23542711
chr15	CG	SV	27198774	27199846	88	.	.	ID=2425;Type=deletion;Left=chr15:27198774-27199307+;Right=chr15:27199196-27199846+;Distance=422;DiscordantMatePairAlignments=88;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=L1MEc:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs67495753 (chr15:27198766-27199188);Frequency=1.00
chr15	CG	SV	27198774	27199307	88	+	.	ID=2425;Type=deletion;Left=chr15:27198774-27199307;Right=chr15:27199196-27199846
chr15	CG	SV	27199196	27199846	88	+	.	ID=2425;Type=deletion;Left=chr15:27198774-27199307;Right=chr15:27199196-27199846
chr15	CG	SV	32796325	32797123	15	.	.	ID=2424;Type=deletion;Left=chr15:32796325-32796846+;Right=chr15:32796660-32797123+;Distance=335;DiscordantMatePairAlignments=15;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67980090 (chr15:32796308-32796643);Frequency=1.00
chr15	CG	SV	32796325	32796846	15	+	.	ID=2424;Type=deletion;Left=chr15:32796325-32796846;Right=chr15:32796660-32797123
chr15	CG	SV	32796660	32797123	15	+	.	ID=2424;Type=deletion;Left=chr15:32796325-32796846;Right=chr15:32796660-32797123
chr15	CG	SV	38609283	38611196	53	.	.	ID=2420;Type=deletion;Left=chr15:38609283-38609808+;Right=chr15:38610944-38611196+;Distance=1661;DiscordantMatePairAlignments=53;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr15	CG	SV	38609283	38609808	53	+	.	ID=2420;Type=deletion;Left=chr15:38609283-38609808;Right=chr15:38610944-38611196
chr15	CG	SV	38610944	38611196	53	+	.	ID=2420;Type=deletion;Left=chr15:38609283-38609808;Right=chr15:38610944-38611196
chr15	CG	SV	39653307	39657823	19	.	.	ID=2409;Type=deletion;Left=chr15:39653307-39653816+;Right=chr15:39657377-39657823+;Distance=4070;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_006293:+;RightGenes=NM_006293:+;XRef=;Frequency=0.24
chr15	CG	SV	39653307	39653816	19	+	.	ID=2409;Type=deletion;Left=chr15:39653307-39653816;Right=chr15:39657377-39657823
chr15	CG	SV	39657377	39657823	19	+	.	ID=2409;Type=deletion;Left=chr15:39653307-39653816;Right=chr15:39657377-39657823
chr15	CG	SV	43855272	43856103	21	.	.	ID=2406;Type=deletion;Left=chr15:43855272-43855707+;Right=chr15:43855622-43856103+;Distance=350;DiscordantMatePairAlignments=21;LeftRepeat=L1MEa:LINE:L1;Tandem T;RightRepeat=L1MEa:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67712655 (chr15:43855272-43855622);Frequency=1.00
chr15	CG	SV	43855272	43855707	21	+	.	ID=2406;Type=deletion;Left=chr15:43855272-43855707;Right=chr15:43855622-43856103
chr15	CG	SV	43855622	43856103	21	+	.	ID=2406;Type=deletion;Left=chr15:43855272-43855707;Right=chr15:43855622-43856103
chr15	CG	SV	53005511	53012172	31	.	.	ID=2403;Type=deletion;Left=chr15:53005511-53006019+;Right=chr15:53011720-53012172+;Distance=6209;DiscordantMatePairAlignments=31;LeftRepeat=L1M1:LINE:L1;RightRepeat=L1ME3:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71114035 (chr15:53005522-53011731);Frequency=1.00
chr15	CG	SV	53005511	53006019	31	+	.	ID=2403;Type=deletion;Left=chr15:53005511-53006019;Right=chr15:53011720-53012172
chr15	CG	SV	53011720	53012172	31	+	.	ID=2403;Type=deletion;Left=chr15:53005511-53006019;Right=chr15:53011720-53012172
chr15	CG	SV	57500190	57501124	22	.	.	ID=2399;Type=deletion;Left=chr15:57500190-57500568+;Right=chr15:57500521-57501124+;Distance=331;DiscordantMatePairAlignments=22;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67321160 (chr15:57500178-57500509);Frequency=1.00
chr15	CG	SV	57500190	57500568	22	+	.	ID=2399;Type=deletion;Left=chr15:57500190-57500568;Right=chr15:57500521-57501124
chr15	CG	SV	57500521	57501124	22	+	.	ID=2399;Type=deletion;Left=chr15:57500190-57500568;Right=chr15:57500521-57501124
chr15	CG	SV	65321533	65322394	17	.	.	ID=2395;Type=deletion;Left=chr15:65321533-65321958+;Right=chr15:65321867-65322394+;Distance=334;DiscordantMatePairAlignments=17;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_024666:-;RightGenes=NM_024666:-;XRef=rs72322625 (chr15:65321533-65321867);Frequency=0.41
chr15	CG	SV	65321533	65321958	17	+	.	ID=2395;Type=deletion;Left=chr15:65321533-65321958;Right=chr15:65321867-65322394
chr15	CG	SV	65321867	65322394	17	+	.	ID=2395;Type=deletion;Left=chr15:65321533-65321958;Right=chr15:65321867-65322394
chr15	CG	SV	66213070	66216464	71	.	.	ID=2394;Type=deletion;Left=chr15:66213070-66213486+;Right=chr15:66215995-66216464+;Distance=2925;DiscordantMatePairAlignments=71;LeftRepeat=(TTTTTA)n:Simple_repeat:Simple_repeat;Self chain;Tandem ATTTTT;Tandem TTTTA;RightRepeat=Self chain;LeftGenes=NM_016166:+;RightGenes=NM_016166:+;XRef=rs67675605 (chr15:66213056-66215981);Frequency=1.00
chr15	CG	SV	66213070	66213486	71	+	.	ID=2394;Type=deletion;Left=chr15:66213070-66213486;Right=chr15:66215995-66216464
chr15	CG	SV	66215995	66216464	71	+	.	ID=2394;Type=deletion;Left=chr15:66213070-66213486;Right=chr15:66215995-66216464
chr15	CG	SV	69495663	69501085	14	.	.	ID=2392;Type=deletion;Left=chr15:69495663-69496120+;Right=chr15:69500744-69501085+;Distance=5081;DiscordantMatePairAlignments=14;LeftRepeat=L1MA2:LINE:L1;Self chain;RightRepeat=L1M1:LINE:L1;Self chain;LeftGenes=NM_024817:+;RightGenes=NM_024817:+;XRef=;Frequency=0.47
chr15	CG	SV	69495663	69496120	14	+	.	ID=2392;Type=deletion;Left=chr15:69495663-69496120;Right=chr15:69500744-69501085
chr15	CG	SV	69500744	69501085	14	+	.	ID=2392;Type=deletion;Left=chr15:69495663-69496120;Right=chr15:69500744-69501085
chr15	CG	SV	69804361	69805086	21	.	.	ID=2390;Type=deletion;Left=chr15:69804361-69804763+;Right=chr15:69804721-69805086+;Distance=360;DiscordantMatePairAlignments=21;LeftRepeat=L2:LINE:L2;Self chain;Tandem period 180;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_024817:+;RightGenes=NM_024817:+;XRef=rs71114044 (chr15:69804361-69804721);Frequency=1.00
chr15	CG	SV	69804361	69804763	21	+	.	ID=2390;Type=deletion;Left=chr15:69804361-69804763;Right=chr15:69804721-69805086
chr15	CG	SV	69804721	69805086	21	+	.	ID=2390;Type=deletion;Left=chr15:69804361-69804763;Right=chr15:69804721-69805086
chr15	CG	SV	75697927	75698722	40	.	.	ID=2386;Type=deletion;Left=chr15:75697927-75698550+;Right=chr15:75698301-75698722+;Distance=374;DiscordantMatePairAlignments=40;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_032808:-;RightGenes=NM_032808:-;XRef=rs35529068 (chr15:75697916-75698290);Frequency=1.00
chr15	CG	SV	75697927	75698550	40	+	.	ID=2386;Type=deletion;Left=chr15:75697927-75698550;Right=chr15:75698301-75698722
chr15	CG	SV	75698301	75698722	40	+	.	ID=2386;Type=deletion;Left=chr15:75697927-75698550;Right=chr15:75698301-75698722
chr15	CG	SV	75778347	75779155	11	.	.	ID=1204;Type=tandem-duplication;Left=chr15:75778347-75778718-;Right=chr15:75778945-75779155-;Distance=437;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 31;Tandem period 64;RightRepeat=Self chain;Tandem period 31;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr15	CG	SV	75778347	75778718	11	-	.	ID=1204;Type=tandem-duplication;Left=chr15:75778347-75778718;Right=chr15:75778945-75779155
chr15	CG	SV	75778945	75779155	11	-	.	ID=1204;Type=tandem-duplication;Left=chr15:75778347-75778718;Right=chr15:75778945-75779155
chr15	CG	SV	77592035	77592634	16	.	.	ID=2385;Type=deletion;Left=chr15:77592035-77592578+;Right=chr15:77592394-77592634+;Distance=359;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 359;RightRepeat=Self chain;Tandem period 359;LeftGenes=;RightGenes=;XRef=rs6145645 (chr15:77591688-77592047);Frequency=0.76
chr15	CG	SV	77592035	77592578	16	+	.	ID=2385;Type=deletion;Left=chr15:77592035-77592578;Right=chr15:77592394-77592634
chr15	CG	SV	77592394	77592634	16	+	.	ID=2385;Type=deletion;Left=chr15:77592035-77592578;Right=chr15:77592394-77592634
chr15	CG	SV	85501163	85501813	33	.	.	ID=2380;Type=deletion;Left=chr15:85501163-85501664+;Right=chr15:85501581-85501813+;Distance=418;DiscordantMatePairAlignments=33;LeftRepeat=Tandem TTCC;Tandem period 28;Tandem period 43;Tandem period 71;polypyrimidine:Low_complexity:Low_complexity;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem period 28;LeftGenes=;RightGenes=;XRef=rs67982659 (chr15:85501027-85501436);Frequency=0.71
chr15	CG	SV	85501163	85501664	33	+	.	ID=2380;Type=deletion;Left=chr15:85501163-85501664;Right=chr15:85501581-85501813
chr15	CG	SV	85501581	85501813	33	+	.	ID=2380;Type=deletion;Left=chr15:85501163-85501664;Right=chr15:85501581-85501813
chr15	CG	SV	89782584	89790573	21	.	.	ID=2378;Type=deletion;Left=chr15:89782584-89783110+;Right=chr15:89790272-89790573+;Distance=7688;DiscordantMatePairAlignments=21;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr15	CG	SV	89782584	89783110	21	+	.	ID=2378;Type=deletion;Left=chr15:89782584-89783110;Right=chr15:89790272-89790573
chr15	CG	SV	89790272	89790573	21	+	.	ID=2378;Type=deletion;Left=chr15:89782584-89783110;Right=chr15:89790272-89790573
chr15	CG	SV	91316802	91317521	12	.	.	ID=2377;Type=deletion;Left=chr15:91316802-91317321+;Right=chr15:91317115-91317521+;Distance=313;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001271:+;RightGenes=NM_001271:+;XRef=rs72169613 (chr15:91316791-91317104);Frequency=0.94
chr15	CG	SV	91316802	91317321	12	+	.	ID=2377;Type=deletion;Left=chr15:91316802-91317321;Right=chr15:91317115-91317521
chr15	CG	SV	91317115	91317521	12	+	.	ID=2377;Type=deletion;Left=chr15:91316802-91317321;Right=chr15:91317115-91317521
chr15	CG	SV	96634540	96635445	21	.	.	ID=2375;Type=deletion;Left=chr15:96634540-96634769+;Right=chr15:96634949-96635445+;Distance=409;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=L1PA17:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr15	CG	SV	96634540	96634769	21	+	.	ID=2375;Type=deletion;Left=chr15:96634540-96634769;Right=chr15:96634949-96635445
chr15	CG	SV	96634949	96635445	21	+	.	ID=2375;Type=deletion;Left=chr15:96634540-96634769;Right=chr15:96634949-96635445
chr15	CG	SV	96717592	96718604	42	.	.	ID=2374;Type=deletion;Left=chr15:96717592-96717868+;Right=chr15:96718158-96718604+;Distance=566;DiscordantMatePairAlignments=42;LeftRepeat=L1MC:LINE:L1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67424211 (chr15:96717594-96718160);Frequency=0.71
chr15	CG	SV	96717592	96717868	42	+	.	ID=2374;Type=deletion;Left=chr15:96717592-96717868;Right=chr15:96718158-96718604
chr15	CG	SV	96718158	96718604	42	+	.	ID=2374;Type=deletion;Left=chr15:96717592-96717868;Right=chr15:96718158-96718604
chr15	CG	SV	98869353	98870088	37	.	.	ID=2373;Type=deletion;Left=chr15:98869353-98869697+;Right=chr15:98869855-98870088+;Distance=502;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;Tandem period 63;RightRepeat=Self chain;LeftGenes=NM_178842:-;RightGenes=NM_178842:-;XRef=rs72451132 (chr15:98869262-98869701);Frequency=1.00
chr15	CG	SV	98869353	98869697	37	+	.	ID=2373;Type=deletion;Left=chr15:98869353-98869697;Right=chr15:98869855-98870088
chr15	CG	SV	98869855	98870088	37	+	.	ID=2373;Type=deletion;Left=chr15:98869353-98869697;Right=chr15:98869855-98870088
chr15	CG	SV	99067858	99068267	11	.	.	ID=1201;Type=tandem-duplication;Left=chr15:99067858-99068060-;Right=chr15:99068140-99068267-;Distance=207;DiscordantMatePairAlignments=11;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGGAGG;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr15	CG	SV	99067858	99068060	11	-	.	ID=1201;Type=tandem-duplication;Left=chr15:99067858-99068060;Right=chr15:99068140-99068267
chr15	CG	SV	99068140	99068267	11	-	.	ID=1201;Type=tandem-duplication;Left=chr15:99067858-99068060;Right=chr15:99068140-99068267
chr15	CG	SV	99843871	100131539	162	.	.	ID=1200;Type=tandem-duplication;Left=chr15:99843871-99844519-;Right=chr15:100130995-100131539-;Distance=287020;DiscordantMatePairAlignments=162;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=NM_002570:-;NM_138319:-;NM_138320:-;NM_138321:-;NM_138322:-;NM_138323:-;NM_138324:-;NM_138325:-;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	99843871	99844519	162	-	.	ID=1200;Type=tandem-duplication;Left=chr15:99843871-99844519;Right=chr15:100130995-100131539
chr15	CG	SV	100130995	100131539	162	-	.	ID=1200;Type=tandem-duplication;Left=chr15:99843871-99844519;Right=chr15:100130995-100131539
chr15	CG	SV	99968989	99983555	135	.	.	ID=4331;Type=probable-inversion;Left=chr15:99968989-99969431+;Right=chr15:99982990-99983555-;Distance=14566;DiscordantMatePairAlignments=135;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	99968989	99969431	135	+	.	ID=4331;Type=probable-inversion;Left=chr15:99968989-99969431;Right=chr15:99982990-99983555
chr15	CG	SV	99982990	99983555	135	+	.	ID=4331;Type=probable-inversion;Left=chr15:99968989-99969431;Right=chr15:99982990-99983555
chr15	CG	SV	99981952	100040191	157	.	.	ID=259;Type=probable-inversion;Left=chr15:99981952-99982422-;Right=chr15:100039687-100040191+;Distance=57265;DiscordantMatePairAlignments=157;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=NM_152334:-;XRef=;Frequency=0.00
chr15	CG	SV	99981952	99982422	157	-	.	ID=259;Type=probable-inversion;Left=chr15:99981952-99982422;Right=chr15:100039687-100040191
chr15	CG	SV	100039687	100040191	157	-	.	ID=259;Type=probable-inversion;Left=chr15:99981952-99982422;Right=chr15:100039687-100040191
chr16	CG	SV	1362874	1364672	84	.	.	ID=2369;Type=deletion;Left=chr16:1362874-1363348+;Right=chr16:1364192-1364672+;Distance=1318;DiscordantMatePairAlignments=84;LeftRepeat=Self chain;Tandem period 55;RightRepeat=Self chain;Tandem period 55;LeftGenes=NM_023076:-;RightGenes=NM_023076:-;XRef=rs72390176 (chr16:1363011-1364219);Frequency=1.00
chr16	CG	SV	1362874	1363348	84	+	.	ID=2369;Type=deletion;Left=chr16:1362874-1363348;Right=chr16:1364192-1364672
chr16	CG	SV	1364192	1364672	84	+	.	ID=2369;Type=deletion;Left=chr16:1362874-1363348;Right=chr16:1364192-1364672
chr16	CG	SV	11591256	11593015	21	.	.	ID=2368;Type=deletion;Left=chr16:11591256-11591692+;Right=chr16:11592817-11593015+;Distance=1561;DiscordantMatePairAlignments=21;LeftRepeat=AluJo:SINE:Alu;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr16	CG	SV	11591256	11591692	21	+	.	ID=2368;Type=deletion;Left=chr16:11591256-11591692;Right=chr16:11592817-11593015
chr16	CG	SV	11592817	11593015	21	+	.	ID=2368;Type=deletion;Left=chr16:11591256-11591692;Right=chr16:11592817-11593015
chr16	CG	SV	14360737	14361495	26	.	.	ID=2367;Type=deletion;Left=chr16:14360737-14361304+;Right=chr16:14361155-14361495+;Distance=418;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=rs72460419 (chr16:14360736-14361154);Frequency=0.00
chr16	CG	SV	14360737	14361304	26	+	.	ID=2367;Type=deletion;Left=chr16:14360737-14361304;Right=chr16:14361155-14361495
chr16	CG	SV	14361155	14361495	26	+	.	ID=2367;Type=deletion;Left=chr16:14360737-14361304;Right=chr16:14361155-14361495
chr16	CG	SV	14488268	33858184	148	.	.	ID=107;Type=complex;Left=chr16:14488268-14488376-;Right=chr16:33857677-33858184+;Distance=19369301;DiscordantMatePairAlignments=148;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=NM_001134477:-;NM_002582:-;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	14488268	14488376	148	-	.	ID=107;Type=complex;Left=chr16:14488268-14488376;Right=chr16:33857677-33858184
chr16	CG	SV	33857677	33858184	148	-	.	ID=107;Type=complex;Left=chr16:14488268-14488376;Right=chr16:33857677-33858184
chr16	CG	SV	16841871	16848430	83	.	.	ID=2227;Type=deletion;Left=chr16:16841871-16842465+;Right=chr16:16847922-16848430+;Distance=6051;DiscordantMatePairAlignments=83;LeftRepeat=Self chain;RightRepeat=L1ME3B:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71962966 (chr16:16841879-16847930);Frequency=0.94
chr16	CG	SV	16841871	16842465	83	+	.	ID=2227;Type=deletion;Left=chr16:16841871-16842465;Right=chr16:16847922-16848430
chr16	CG	SV	16847922	16848430	83	+	.	ID=2227;Type=deletion;Left=chr16:16841871-16842465;Right=chr16:16847922-16848430
chr16	CG	SV	20150828	20199992	47	.	.	ID=1195;Type=tandem-duplication;Left=chr16:20150828-20151282-;Right=chr16:20199575-20199992-;Distance=48710;DiscordantMatePairAlignments=47;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	20150828	20151282	47	-	.	ID=1195;Type=tandem-duplication;Left=chr16:20150828-20151282;Right=chr16:20199575-20199992
chr16	CG	SV	20199575	20199992	47	-	.	ID=1195;Type=tandem-duplication;Left=chr16:20150828-20151282;Right=chr16:20199575-20199992
chr16	CG	SV	22955276	22957568	202	.	.	ID=2224;Type=deletion;Left=chr16:22955276-22955797+;Right=chr16:22957032-22957568+;Distance=1756;DiscordantMatePairAlignments=202;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67692612 (chr16:22955282-22957032);Frequency=0.88
chr16	CG	SV	22955276	22955797	202	+	.	ID=2224;Type=deletion;Left=chr16:22955276-22955797;Right=chr16:22957032-22957568
chr16	CG	SV	22957032	22957568	202	+	.	ID=2224;Type=deletion;Left=chr16:22955276-22955797;Right=chr16:22957032-22957568
chr16	CG	SV	24413139	24633741	14	.	.	ID=1194;Type=tandem-duplication;Left=chr16:24413139-24413574-;Right=chr16:24633527-24633741-;Distance=220167;DiscordantMatePairAlignments=14;LeftRepeat=AluJ:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	24413139	24413574	14	-	.	ID=1194;Type=tandem-duplication;Left=chr16:24413139-24413574;Right=chr16:24633527-24633741
chr16	CG	SV	24633527	24633741	14	-	.	ID=1194;Type=tandem-duplication;Left=chr16:24413139-24413574;Right=chr16:24633527-24633741
chr16	CG	SV	26292569	26293768	48	.	.	ID=1193;Type=tandem-duplication;Left=chr16:26292569-26292872-;Right=chr16:26293284-26293768-;Distance=896;DiscordantMatePairAlignments=48;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;Tandem GATG;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	26292569	26292872	48	-	.	ID=1193;Type=tandem-duplication;Left=chr16:26292569-26292872;Right=chr16:26293284-26293768
chr16	CG	SV	26293284	26293768	48	-	.	ID=1193;Type=tandem-duplication;Left=chr16:26292569-26292872;Right=chr16:26293284-26293768
chr16	CG	SV	29716324	30966163	131	.	.	ID=1055;Type=tandem-duplication;Left=chr16:29716324-29716800-;Right=chr16:30965745-30966163-;Distance=1249363;DiscordantMatePairAlignments=131;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	29716324	29716800	131	-	.	ID=1055;Type=tandem-duplication;Left=chr16:29716324-29716800;Right=chr16:30965745-30966163
chr16	CG	SV	30965745	30966163	131	-	.	ID=1055;Type=tandem-duplication;Left=chr16:29716324-29716800;Right=chr16:30965745-30966163
chr16	CG	SV	33829643	33830868	13	.	.	ID=2220;Type=deletion;Left=chr16:33829643-33829895+;Right=chr16:33830566-33830868+;Distance=923;DiscordantMatePairAlignments=13;LeftRepeat=L1MEc:LINE:L1;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	33829643	33829895	13	+	.	ID=2220;Type=deletion;Left=chr16:33829643-33829895;Right=chr16:33830566-33830868
chr16	CG	SV	33830566	33830868	13	+	.	ID=2220;Type=deletion;Left=chr16:33829643-33829895;Right=chr16:33830566-33830868
chr16	CG	SV	33834280	33840536	11	.	.	ID=2219;Type=deletion;Left=chr16:33834280-33834753+;Right=chr16:33840253-33840536+;Distance=5973;DiscordantMatePairAlignments=11;LeftRepeat=L1MA9:LINE:L1;SegDup;Self chain;RightRepeat=L1MA9:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr16	CG	SV	33834280	33834753	11	+	.	ID=2219;Type=deletion;Left=chr16:33834280-33834753;Right=chr16:33840253-33840536
chr16	CG	SV	33840253	33840536	11	+	.	ID=2219;Type=deletion;Left=chr16:33834280-33834753;Right=chr16:33840253-33840536
chr16	CG	SV	33852431	33853501	15	.	.	ID=2217;Type=deletion;Left=chr16:33852431-33852704+;Right=chr16:33852872-33853501+;Distance=441;DiscordantMatePairAlignments=15;LeftRepeat=SegDup;Self chain;RightRepeat=AluSq:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	33852431	33852704	15	+	.	ID=2217;Type=deletion;Left=chr16:33852431-33852704;Right=chr16:33852872-33853501
chr16	CG	SV	33852872	33853501	15	+	.	ID=2217;Type=deletion;Left=chr16:33852431-33852704;Right=chr16:33852872-33853501
chr16	CG	SV	33857196	33857999	21	.	.	ID=2216;Type=complex;Left=chr16:33857196-33857613+;Right=chr16:33857588-33857999+;Distance=392;DiscordantMatePairAlignments=21;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	33857196	33857613	21	+	.	ID=2216;Type=complex;Left=chr16:33857196-33857613;Right=chr16:33857588-33857999
chr16	CG	SV	33857588	33857999	21	+	.	ID=2216;Type=complex;Left=chr16:33857196-33857613;Right=chr16:33857588-33857999
chr16	CG	SV	47523396	47524088	22	.	.	ID=1046;Type=tandem-duplication;Left=chr16:47523396-47523688-;Right=chr16:47523696-47524088-;Distance=400;DiscordantMatePairAlignments=22;LeftRepeat=(CA)n:Simple_repeat:Simple_repeat;Tandem period 16;RightRepeat=Tandem period 16;Tandem period 20;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr16	CG	SV	47523396	47523688	22	-	.	ID=1046;Type=tandem-duplication;Left=chr16:47523396-47523688;Right=chr16:47523696-47524088
chr16	CG	SV	47523696	47524088	22	-	.	ID=1046;Type=tandem-duplication;Left=chr16:47523396-47523688;Right=chr16:47523696-47524088
chr16	CG	SV	56282896	56285868	127	.	.	ID=2210;Type=deletion;Left=chr16:56282896-56283227+;Right=chr16:56285347-56285868+;Distance=2451;DiscordantMatePairAlignments=127;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr16	CG	SV	56282896	56283227	127	+	.	ID=2210;Type=deletion;Left=chr16:56282896-56283227;Right=chr16:56285347-56285868
chr16	CG	SV	56285347	56285868	127	+	.	ID=2210;Type=deletion;Left=chr16:56282896-56283227;Right=chr16:56285347-56285868
chr16	CG	SV	59467546	59471912	22	.	.	ID=2208;Type=deletion;Left=chr16:59467546-59467955+;Right=chr16:59471433-59471912+;Distance=3887;DiscordantMatePairAlignments=22;LeftRepeat=L1HS:LINE:L1;RightRepeat=MER65C:LTR:ERV1;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr16	CG	SV	59467546	59467955	22	+	.	ID=2208;Type=deletion;Left=chr16:59467546-59467955;Right=chr16:59471433-59471912
chr16	CG	SV	59471433	59471912	22	+	.	ID=2208;Type=deletion;Left=chr16:59467546-59467955;Right=chr16:59471433-59471912
chr16	CG	SV	68319016	68320873	22	.	.	ID=103;Type=distal-duplication;Left=chr16:68319016-68319307-;Right=chr16:68320423-68320873+;Distance=1116;DiscordantMatePairAlignments=22;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr16	CG	SV	68319016	68319307	22	-	.	ID=103;Type=distal-duplication;Left=chr16:68319016-68319307;Right=chr16:68320423-68320873
chr16	CG	SV	68320423	68320873	22	-	.	ID=103;Type=distal-duplication;Left=chr16:68319016-68319307;Right=chr16:68320423-68320873
chr16	CG	SV	68319632	68320388	128	.	.	ID=4174;Type=distal-duplication;Left=chr16:68319632-68319936+;Right=chr16:68319863-68320388-;Distance=756;DiscordantMatePairAlignments=128;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr16	CG	SV	68319632	68319936	128	+	.	ID=4174;Type=distal-duplication;Left=chr16:68319632-68319936;Right=chr16:68319863-68320388
chr16	CG	SV	68319863	68320388	128	+	.	ID=4174;Type=distal-duplication;Left=chr16:68319632-68319936;Right=chr16:68319863-68320388
chr16	CG	SV	68411664	68416522	41	.	.	ID=1044;Type=tandem-duplication;Left=chr16:68411664-68412186-;Right=chr16:68416397-68416522-;Distance=4336;DiscordantMatePairAlignments=41;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=Self chain;LeftGenes=NM_007014:+;NM_199423:+;RightGenes=NM_007014:+;NM_199423:+;XRef=;Frequency=0.41
chr16	CG	SV	68411664	68412186	41	-	.	ID=1044;Type=tandem-duplication;Left=chr16:68411664-68412186;Right=chr16:68416397-68416522
chr16	CG	SV	68416397	68416522	41	-	.	ID=1044;Type=tandem-duplication;Left=chr16:68411664-68412186;Right=chr16:68416397-68416522
chr16	CG	SV	69535300	69537960	179	.	.	ID=2203;Type=deletion;Left=chr16:69535300-69535788+;Right=chr16:69537395-69537960+;Distance=2095;DiscordantMatePairAlignments=179;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_032821:-;RightGenes=NM_032821:-;XRef=rs67363752 (chr16:69535300-69537395);Frequency=1.00
chr16	CG	SV	69535300	69535788	179	+	.	ID=2203;Type=deletion;Left=chr16:69535300-69535788;Right=chr16:69537395-69537960
chr16	CG	SV	69537395	69537960	179	+	.	ID=2203;Type=deletion;Left=chr16:69535300-69535788;Right=chr16:69537395-69537960
chr16	CG	SV	69721878	69722677	21	.	.	ID=2201;Type=deletion;Left=chr16:69721878-69722418+;Right=chr16:69722205-69722677+;Distance=327;DiscordantMatePairAlignments=21;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_017558:-;NM_032821:-;RightGenes=NM_017558:-;NM_032821:-;XRef=rs10527113 (chr16:69721864-69722191);Frequency=1.00
chr16	CG	SV	69721878	69722418	21	+	.	ID=2201;Type=deletion;Left=chr16:69721878-69722418;Right=chr16:69722205-69722677
chr16	CG	SV	69722205	69722677	21	+	.	ID=2201;Type=deletion;Left=chr16:69721878-69722418;Right=chr16:69722205-69722677
chr16	CG	SV	73987397	73988355	20	.	.	ID=2199;Type=deletion;Left=chr16:73987397-73987735+;Right=chr16:73988239-73988355+;Distance=842;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_006324:-;RightGenes=NM_006324:-;XRef=;Frequency=0.82
chr16	CG	SV	73987397	73987735	20	+	.	ID=2199;Type=deletion;Left=chr16:73987397-73987735;Right=chr16:73988239-73988355
chr16	CG	SV	73988239	73988355	20	+	.	ID=2199;Type=deletion;Left=chr16:73987397-73987735;Right=chr16:73988239-73988355
chr16	CG	SV	75096634	75102076	105	.	.	ID=2198;Type=deletion;Left=chr16:75096634-75097130+;Right=chr16:75101526-75102076+;Distance=4892;DiscordantMatePairAlignments=105;LeftRepeat=L1ME1:LINE:L1;Self chain;RightRepeat=L1MB8:LINE:L1;Self chain;LeftGenes=NM_033401:+;NM_138994:+;RightGenes=NM_033401:+;NM_138994:+;XRef=rs67420665 (chr16:75096635-75101526);Frequency=1.00
chr16	CG	SV	75096634	75097130	105	+	.	ID=2198;Type=deletion;Left=chr16:75096634-75097130;Right=chr16:75101526-75102076
chr16	CG	SV	75101526	75102076	105	+	.	ID=2198;Type=deletion;Left=chr16:75096634-75097130;Right=chr16:75101526-75102076
chr16	CG	SV	76613575	76838182	93	.	.	ID=1043;Type=tandem-duplication;Left=chr16:76613575-76614057-;Right=chr16:76837715-76838182-;Distance=224125;DiscordantMatePairAlignments=93;LeftRepeat=;RightRepeat=;LeftGenes=NM_005752:+;RightGenes=NM_016373:+;NM_130791:+;XRef=;Frequency=0.00
chr16	CG	SV	76613575	76614057	93	-	.	ID=1043;Type=tandem-duplication;Left=chr16:76613575-76614057;Right=chr16:76837715-76838182
chr16	CG	SV	76837715	76838182	93	-	.	ID=1043;Type=tandem-duplication;Left=chr16:76613575-76614057;Right=chr16:76837715-76838182
chr16	CG	SV	79731409	79732188	38	.	.	ID=2196;Type=deletion;Left=chr16:79731409-79731925+;Right=chr16:79731916-79732188+;Distance=507;DiscordantMatePairAlignments=38;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_052892:-;RightGenes=NM_052892:-;XRef=rs71136601 (chr16:79731342-79731850);Frequency=0.94
chr16	CG	SV	79731409	79731925	38	+	.	ID=2196;Type=deletion;Left=chr16:79731409-79731925;Right=chr16:79731916-79732188
chr16	CG	SV	79731916	79732188	38	+	.	ID=2196;Type=deletion;Left=chr16:79731409-79731925;Right=chr16:79731916-79732188
chr16	CG	SV	80355622	80356702	49	.	.	ID=1042;Type=tandem-duplication;Left=chr16:80355622-80356159-;Right=chr16:80356229-80356702-;Distance=543;DiscordantMatePairAlignments=49;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr16	CG	SV	80355622	80356159	49	-	.	ID=1042;Type=tandem-duplication;Left=chr16:80355622-80356159;Right=chr16:80356229-80356702
chr16	CG	SV	80356229	80356702	49	-	.	ID=1042;Type=tandem-duplication;Left=chr16:80355622-80356159;Right=chr16:80356229-80356702
chr16	CG	SV	83745624	83747535	22	.	.	ID=102;Type=distal-duplication;Left=chr16:83745624-83746170-;Right=chr16:83747348-83747535+;Distance=1178;DiscordantMatePairAlignments=22;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	83745624	83746170	22	-	.	ID=102;Type=distal-duplication;Left=chr16:83745624-83746170;Right=chr16:83747348-83747535
chr16	CG	SV	83747348	83747535	22	-	.	ID=102;Type=distal-duplication;Left=chr16:83745624-83746170;Right=chr16:83747348-83747535
chr16	CG	SV	83746446	83747108	19	.	.	ID=4172;Type=distal-duplication;Left=chr16:83746446-83746946+;Right=chr16:83746854-83747108-;Distance=662;DiscordantMatePairAlignments=19;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	83746446	83746946	19	+	.	ID=4172;Type=distal-duplication;Left=chr16:83746446-83746946;Right=chr16:83746854-83747108
chr16	CG	SV	83746854	83747108	19	+	.	ID=4172;Type=distal-duplication;Left=chr16:83746446-83746946;Right=chr16:83746854-83747108
chr16	CG	SV	84841822	84842455	12	.	.	ID=2195;Type=deletion;Left=chr16:84841822-84842436+;Right=chr16:84842130-84842455+;Distance=308;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66683203 (chr16:84841809-84842117);Frequency=1.00
chr16	CG	SV	84841822	84842436	12	+	.	ID=2195;Type=deletion;Left=chr16:84841822-84842436;Right=chr16:84842130-84842455
chr16	CG	SV	84842130	84842455	12	+	.	ID=2195;Type=deletion;Left=chr16:84841822-84842436;Right=chr16:84842130-84842455
chr17	CG	SV	20665	22138	104	.	.	ID=2193;Type=deletion;Left=chr17:20665-20999+;Right=chr17:21805-22138+;Distance=1140;DiscordantMatePairAlignments=104;LeftRepeat=(CCGGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 32;Tandem period 98;RightRepeat=SUBTEL_sa:Satellite:Satellite;Self chain;Tandem period 32;Tandem period 98;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr17	CG	SV	20665	20999	104	+	.	ID=2193;Type=deletion;Left=chr17:20665-20999;Right=chr17:21805-22138
chr17	CG	SV	21805	22138	104	+	.	ID=2193;Type=deletion;Left=chr17:20665-20999;Right=chr17:21805-22138
chr17	CG	SV	203153	203497	39	.	.	ID=1038;Type=tandem-duplication;Left=chr17:203153-203311-;Right=chr17:203309-203497-;Distance=186;DiscordantMatePairAlignments=39;LeftRepeat=Self chain;Tandem period 97;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr17	CG	SV	203153	203311	39	-	.	ID=1038;Type=tandem-duplication;Left=chr17:203153-203311;Right=chr17:203309-203497
chr17	CG	SV	203309	203497	39	-	.	ID=1038;Type=tandem-duplication;Left=chr17:203153-203311;Right=chr17:203309-203497
chr17	CG	SV	210537	211211	29	.	.	ID=2190;Type=deletion;Left=chr17:210537-211097+;Right=chr17:210879-211211+;Distance=342;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;Tandem period 38;LeftGenes=;RightGenes=;XRef=rs72311848 (chr17:210476-210818);Frequency=1.00
chr17	CG	SV	210537	211097	29	+	.	ID=2190;Type=deletion;Left=chr17:210537-211097;Right=chr17:210879-211211
chr17	CG	SV	210879	211211	29	+	.	ID=2190;Type=deletion;Left=chr17:210537-211097;Right=chr17:210879-211211
chr17	CG	SV	670609	671939	18	.	.	ID=2188;Type=deletion;Left=chr17:670609-671116+;Right=chr17:671748-671939+;Distance=1139;DiscordantMatePairAlignments=18;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem period 312;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_022463:-;RightGenes=NM_022463:-;XRef=;Frequency=0.94
chr17	CG	SV	670609	671116	18	+	.	ID=2188;Type=deletion;Left=chr17:670609-671116;Right=chr17:671748-671939
chr17	CG	SV	671748	671939	18	+	.	ID=2188;Type=deletion;Left=chr17:670609-671116;Right=chr17:671748-671939
chr17	CG	SV	685748	686729	73	.	.	ID=2187;Type=deletion;Left=chr17:685748-686191+;Right=chr17:686149-686729+;Distance=401;DiscordantMatePairAlignments=73;LeftRepeat=Self chain;Tandem period 133;Tandem period 45;RightRepeat=Self chain;Tandem period 133;Tandem period 45;LeftGenes=NM_022463:-;RightGenes=NM_022463:-;XRef=rs71371583 (chr17:685701-686103);Frequency=0.65
chr17	CG	SV	685748	686191	73	+	.	ID=2187;Type=deletion;Left=chr17:685748-686191;Right=chr17:686149-686729
chr17	CG	SV	686149	686729	73	+	.	ID=2187;Type=deletion;Left=chr17:685748-686191;Right=chr17:686149-686729
chr17	CG	SV	1068679	1070007	24	.	.	ID=101;Type=probable-inversion;Left=chr17:1068679-1069136-;Right=chr17:1069762-1070007+;Distance=626;DiscordantMatePairAlignments=24;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr17	CG	SV	1068679	1069136	24	-	.	ID=101;Type=probable-inversion;Left=chr17:1068679-1069136;Right=chr17:1069762-1070007
chr17	CG	SV	1069762	1070007	24	-	.	ID=101;Type=probable-inversion;Left=chr17:1068679-1069136;Right=chr17:1069762-1070007
chr17	CG	SV	1601419	1602640	19	.	.	ID=2185;Type=deletion;Left=chr17:1601419-1601831+;Right=chr17:1602150-1602640+;Distance=731;DiscordantMatePairAlignments=19;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSq:SINE:Alu;LeftGenes=NM_000934:+;NM_001165920:+;NM_001165921:+;RightGenes=NM_000934:+;NM_001165920:+;NM_001165921:+;XRef=;Frequency=0.47
chr17	CG	SV	1601419	1601831	19	+	.	ID=2185;Type=deletion;Left=chr17:1601419-1601831;Right=chr17:1602150-1602640
chr17	CG	SV	1602150	1602640	19	+	.	ID=2185;Type=deletion;Left=chr17:1601419-1601831;Right=chr17:1602150-1602640
chr17	CG	SV	8187408	8189060	58	.	.	ID=2182;Type=deletion;Left=chr17:8187408-8187989+;Right=chr17:8188764-8189060+;Distance=1356;DiscordantMatePairAlignments=58;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_153007:+;RightGenes=NM_153007:+;XRef=;Frequency=0.29
chr17	CG	SV	8187408	8187989	58	+	.	ID=2182;Type=deletion;Left=chr17:8187408-8187989;Right=chr17:8188764-8189060
chr17	CG	SV	8188764	8189060	58	+	.	ID=2182;Type=deletion;Left=chr17:8187408-8187989;Right=chr17:8188764-8189060
chr17	CG	SV	13161223	13162027	22	.	.	ID=2181;Type=deletion;Left=chr17:13161223-13161684+;Right=chr17:13161550-13162027+;Distance=327;DiscordantMatePairAlignments=22;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66560097 (chr17:13161223-13161550);Frequency=0.88
chr17	CG	SV	13161223	13161684	22	+	.	ID=2181;Type=deletion;Left=chr17:13161223-13161684;Right=chr17:13161550-13162027
chr17	CG	SV	13161550	13162027	22	+	.	ID=2181;Type=deletion;Left=chr17:13161223-13161684;Right=chr17:13161550-13162027
chr17	CG	SV	14130636	14132796	33	.	.	ID=2180;Type=deletion;Left=chr17:14130636-14131089+;Right=chr17:14132281-14132796+;Distance=1645;DiscordantMatePairAlignments=33;LeftRepeat=MER49:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68129134 (chr17:14130635-14132280);Frequency=1.00
chr17	CG	SV	14130636	14131089	33	+	.	ID=2180;Type=deletion;Left=chr17:14130636-14131089;Right=chr17:14132281-14132796
chr17	CG	SV	14132281	14132796	33	+	.	ID=2180;Type=deletion;Left=chr17:14130636-14131089;Right=chr17:14132281-14132796
chr17	CG	SV	17171092	17172401	226	.	.	ID=2178;Type=deletion;Left=chr17:17171092-17171554+;Right=chr17:17171968-17172401+;Distance=876;DiscordantMatePairAlignments=226;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_020201:+;RightGenes=NM_020201:+;XRef=rs66473553 (chr17:17171082-17171958);Frequency=0.82
chr17	CG	SV	17171092	17171554	226	+	.	ID=2178;Type=deletion;Left=chr17:17171092-17171554;Right=chr17:17171968-17172401
chr17	CG	SV	17171968	17172401	226	+	.	ID=2178;Type=deletion;Left=chr17:17171092-17171554;Right=chr17:17171968-17172401
chr17	CG	SV	18731878	18733299	49	.	.	ID=2177;Type=deletion;Left=chr17:18731878-18732412+;Right=chr17:18732903-18733299+;Distance=1025;DiscordantMatePairAlignments=49;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=NM_002767:+;RightGenes=NM_002767:+;XRef=rs67043860 (chr17:18731878-18732903);Frequency=0.94
chr17	CG	SV	18731878	18732412	49	+	.	ID=2177;Type=deletion;Left=chr17:18731878-18732412;Right=chr17:18732903-18733299
chr17	CG	SV	18732903	18733299	49	+	.	ID=2177;Type=deletion;Left=chr17:18731878-18732412;Right=chr17:18732903-18733299
chr17	CG	SV	19512503	19513402	10	.	.	ID=2175;Type=deletion;Left=chr17:19512503-19512968+;Right=chr17:19512913-19513402+;Distance=410;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000382:+;NM_001031806:+;RightGenes=NM_000382:+;NM_001031806:+;XRef=;Frequency=0.53
chr17	CG	SV	19512503	19512968	10	+	.	ID=2175;Type=deletion;Left=chr17:19512503-19512968;Right=chr17:19512913-19513402
chr17	CG	SV	19512913	19513402	10	+	.	ID=2175;Type=deletion;Left=chr17:19512503-19512968;Right=chr17:19512913-19513402
chr17	CG	SV	21261870	21263967	167	.	.	ID=2174;Type=deletion;Left=chr17:21261870-21262518+;Right=chr17:21263414-21263967+;Distance=1544;DiscordantMatePairAlignments=167;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_021012:+;RightGenes=NM_021012:+;XRef=rs67372876 (chr17:21261870-21263413);Frequency=1.00
chr17	CG	SV	21261870	21262518	167	+	.	ID=2174;Type=deletion;Left=chr17:21261870-21262518;Right=chr17:21263414-21263967
chr17	CG	SV	21263414	21263967	167	+	.	ID=2174;Type=deletion;Left=chr17:21261870-21262518;Right=chr17:21263414-21263967
chr17	CG	SV	23804514	23808019	116	.	.	ID=2171;Type=deletion;Left=chr17:23804514-23804787+;Right=chr17:23807620-23808019+;Distance=3106;DiscordantMatePairAlignments=116;LeftRepeat=MER21B:LTR:ERV1;Self chain;RightRepeat=SVA:Other:Other;Self chain;Tandem period 40;LeftGenes=;RightGenes=;XRef=rs72148141 (chr17:23804512-23807618);Frequency=0.76
chr17	CG	SV	23804514	23804787	116	+	.	ID=2171;Type=deletion;Left=chr17:23804514-23804787;Right=chr17:23807620-23808019
chr17	CG	SV	23807620	23808019	116	+	.	ID=2171;Type=deletion;Left=chr17:23804514-23804787;Right=chr17:23807620-23808019
chr17	CG	SV	35631636	35632431	12	.	.	ID=2169;Type=deletion;Left=chr17:35631636-35632161+;Right=chr17:35632107-35632431+;Distance=471;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_133264:+;RightGenes=NM_133264:+;XRef=;Frequency=1.00
chr17	CG	SV	35631636	35632161	12	+	.	ID=2169;Type=deletion;Left=chr17:35631636-35632161;Right=chr17:35632107-35632431
chr17	CG	SV	35632107	35632431	12	+	.	ID=2169;Type=deletion;Left=chr17:35631636-35632161;Right=chr17:35632107-35632431
chr17	CG	SV	37065316	37344668	88	.	.	ID=1035;Type=tandem-duplication;Left=chr17:37065316-37065806-;Right=chr17:37344403-37344668-;Distance=278862;DiscordantMatePairAlignments=88;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_031421:+;XRef=;Frequency=0.00
chr17	CG	SV	37065316	37065806	88	-	.	ID=1035;Type=tandem-duplication;Left=chr17:37065316-37065806;Right=chr17:37344403-37344668
chr17	CG	SV	37344403	37344668	88	-	.	ID=1035;Type=tandem-duplication;Left=chr17:37065316-37065806;Right=chr17:37344403-37344668
chr17	CG	SV	38736787	38819351	45	.	.	ID=99;Type=probable-inversion;Left=chr17:38736787-38737115-;Right=chr17:38819095-38819351+;Distance=81980;DiscordantMatePairAlignments=45;LeftRepeat=SegDup;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=NR_027412:-;NR_027413:-;XRef=;Frequency=1.00
chr17	CG	SV	38736787	38737115	45	-	.	ID=99;Type=probable-inversion;Left=chr17:38736787-38737115;Right=chr17:38819095-38819351
chr17	CG	SV	38819095	38819351	45	-	.	ID=99;Type=probable-inversion;Left=chr17:38736787-38737115;Right=chr17:38819095-38819351
chr17	CG	SV	38738224	38755485	15	.	.	ID=2167;Type=deletion;Left=chr17:38738224-38738839+;Right=chr17:38755335-38755485+;Distance=17111;DiscordantMatePairAlignments=15;LeftRepeat=AluSx:SINE:Alu;SegDup;Self chain;RightRepeat=AluSg:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr17	CG	SV	38738224	38738839	15	+	.	ID=2167;Type=deletion;Left=chr17:38738224-38738839;Right=chr17:38755335-38755485
chr17	CG	SV	38755335	38755485	15	+	.	ID=2167;Type=deletion;Left=chr17:38738224-38738839;Right=chr17:38755335-38755485
chr17	CG	SV	38739015	38821907	18	.	.	ID=2165;Type=deletion;Left=chr17:38739015-38739408+;Right=chr17:38821536-38821907+;Distance=82521;DiscordantMatePairAlignments=18;LeftRepeat=MIRb:SINE:MIR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NR_027412:-;NR_027413:-;XRef=;Frequency=0.82
chr17	CG	SV	38739015	38739408	18	+	.	ID=2165;Type=deletion;Left=chr17:38739015-38739408;Right=chr17:38821536-38821907
chr17	CG	SV	38821536	38821907	18	+	.	ID=2165;Type=deletion;Left=chr17:38739015-38739408;Right=chr17:38821536-38821907
chr17	CG	SV	38793640	38796210	58	.	.	ID=2166;Type=deletion;Left=chr17:38793640-38794112+;Right=chr17:38795859-38796210+;Distance=2219;DiscordantMatePairAlignments=58;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66799059 (chr17:38793491-38795710);Frequency=0.41
chr17	CG	SV	38793640	38794112	58	+	.	ID=2166;Type=deletion;Left=chr17:38793640-38794112;Right=chr17:38795859-38796210
chr17	CG	SV	38795859	38796210	58	+	.	ID=2166;Type=deletion;Left=chr17:38793640-38794112;Right=chr17:38795859-38796210
chr17	CG	SV	41643147	42530822	13	.	.	ID=1034;Type=tandem-duplication;Left=chr17:41643147-41643642-;Right=chr17:42530743-42530822-;Distance=887180;DiscordantMatePairAlignments=13;LeftRepeat=AluSc:SINE:Alu;Self chain;Tandem A;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr17	CG	SV	41643147	41643642	13	-	.	ID=1034;Type=tandem-duplication;Left=chr17:41643147-41643642;Right=chr17:42530743-42530822
chr17	CG	SV	42530743	42530822	13	-	.	ID=1034;Type=tandem-duplication;Left=chr17:41643147-41643642;Right=chr17:42530743-42530822
chr17	CG	SV	42569727	42571258	218	.	.	ID=2162;Type=complex;Left=chr17:42569727-42570197+;Right=chr17:42571122-42571258+;Distance=1395;DiscordantMatePairAlignments=218;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42569727	42570197	218	+	.	ID=2162;Type=complex;Left=chr17:42569727-42570197;Right=chr17:42571122-42571258
chr17	CG	SV	42571122	42571258	218	+	.	ID=2162;Type=complex;Left=chr17:42569727-42570197;Right=chr17:42571122-42571258
chr17	CG	SV	42569727	42574764	297	.	.	ID=2161;Type=complex;Left=chr17:42569727-42570084+;Right=chr17:42574216-42574764+;Distance=4489;DiscordantMatePairAlignments=297;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42569727	42570084	297	+	.	ID=2161;Type=complex;Left=chr17:42569727-42570084;Right=chr17:42574216-42574764
chr17	CG	SV	42574216	42574764	297	+	.	ID=2161;Type=complex;Left=chr17:42569727-42570084;Right=chr17:42574216-42574764
chr17	CG	SV	42571256	42576327	13	.	.	ID=2158;Type=complex;Left=chr17:42571256-42571405+;Right=chr17:42576250-42576327+;Distance=4994;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42571256	42571405	13	+	.	ID=2158;Type=complex;Left=chr17:42571256-42571405;Right=chr17:42576250-42576327
chr17	CG	SV	42576250	42576327	13	+	.	ID=2158;Type=complex;Left=chr17:42571256-42571405;Right=chr17:42576250-42576327
chr17	CG	SV	42571256	42574803	74	.	.	ID=2159;Type=complex;Left=chr17:42571256-42571409+;Right=chr17:42574595-42574803+;Distance=3339;DiscordantMatePairAlignments=74;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42571256	42571409	74	+	.	ID=2159;Type=complex;Left=chr17:42571256-42571409;Right=chr17:42574595-42574803
chr17	CG	SV	42574595	42574803	74	+	.	ID=2159;Type=complex;Left=chr17:42571256-42571409;Right=chr17:42574595-42574803
chr17	CG	SV	42574803	42589426	68	.	.	ID=2155;Type=complex;Left=chr17:42574803-42574964+;Right=chr17:42589277-42589426+;Distance=14474;DiscordantMatePairAlignments=68;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42574803	42574964	68	+	.	ID=2155;Type=complex;Left=chr17:42574803-42574964;Right=chr17:42589277-42589426
chr17	CG	SV	42589277	42589426	68	+	.	ID=2155;Type=complex;Left=chr17:42574803-42574964;Right=chr17:42589277-42589426
chr17	CG	SV	42576345	42589637	287	.	.	ID=2154;Type=complex;Left=chr17:42576345-42576447+;Right=chr17:42589277-42589637+;Distance=12932;DiscordantMatePairAlignments=287;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42576345	42576447	287	+	.	ID=2154;Type=complex;Left=chr17:42576345-42576447;Right=chr17:42589277-42589637
chr17	CG	SV	42589277	42589637	287	+	.	ID=2154;Type=complex;Left=chr17:42576345-42576447;Right=chr17:42589277-42589637
chr17	CG	SV	42589747	42604388	45	.	.	ID=2148;Type=complex;Left=chr17:42589747-42590205+;Right=chr17:42604280-42604388+;Distance=14533;DiscordantMatePairAlignments=45;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42589747	42590205	45	+	.	ID=2148;Type=complex;Left=chr17:42589747-42590205;Right=chr17:42604280-42604388
chr17	CG	SV	42604280	42604388	45	+	.	ID=2148;Type=complex;Left=chr17:42589747-42590205;Right=chr17:42604280-42604388
chr17	CG	SV	42589747	42602407	40	.	.	ID=2147;Type=complex;Left=chr17:42589747-42590204+;Right=chr17:42602281-42602407+;Distance=12534;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42589747	42590204	40	+	.	ID=2147;Type=complex;Left=chr17:42589747-42590204;Right=chr17:42602281-42602407
chr17	CG	SV	42602281	42602407	40	+	.	ID=2147;Type=complex;Left=chr17:42589747-42590204;Right=chr17:42602281-42602407
chr17	CG	SV	42590669	42621645	86	.	.	ID=2144;Type=deletion;Left=chr17:42590669-42590770+;Right=chr17:42621509-42621645+;Distance=30840;DiscordantMatePairAlignments=86;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42590669	42590770	86	+	.	ID=2144;Type=deletion;Left=chr17:42590669-42590770;Right=chr17:42621509-42621645
chr17	CG	SV	42621509	42621645	86	+	.	ID=2144;Type=deletion;Left=chr17:42590669-42590770;Right=chr17:42621509-42621645
chr17	CG	SV	44392265	44393356	90	.	.	ID=2140;Type=deletion;Left=chr17:44392265-44392692+;Right=chr17:44392865-44393356+;Distance=600;DiscordantMatePairAlignments=90;LeftRepeat=Self chain;Tandem period 40;RightRepeat=Self chain;Tandem period 40;LeftGenes=NM_004123:-;RightGenes=NM_004123:-;XRef=rs71886448 (chr17:44392094-44392694);Frequency=1.00
chr17	CG	SV	44392265	44392692	90	+	.	ID=2140;Type=deletion;Left=chr17:44392265-44392692;Right=chr17:44392865-44393356
chr17	CG	SV	44392865	44393356	90	+	.	ID=2140;Type=deletion;Left=chr17:44392265-44392692;Right=chr17:44392865-44393356
chr17	CG	SV	44706794	44708379	27	.	.	ID=2138;Type=deletion;Left=chr17:44706794-44707284+;Right=chr17:44708097-44708379+;Distance=1303;DiscordantMatePairAlignments=27;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr17	CG	SV	44706794	44707284	27	+	.	ID=2138;Type=deletion;Left=chr17:44706794-44707284;Right=chr17:44708097-44708379
chr17	CG	SV	44708097	44708379	27	+	.	ID=2138;Type=deletion;Left=chr17:44706794-44707284;Right=chr17:44708097-44708379
chr17	CG	SV	45782532	45783221	26	.	.	ID=2137;Type=deletion;Left=chr17:45782532-45783064+;Right=chr17:45782916-45783221+;Distance=384;DiscordantMatePairAlignments=26;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_022167:+;RightGenes=NM_022167:+;XRef=rs71143435 (chr17:45782307-45782690);Frequency=0.47
chr17	CG	SV	45782532	45783064	26	+	.	ID=2137;Type=deletion;Left=chr17:45782532-45783064;Right=chr17:45782916-45783221
chr17	CG	SV	45782916	45783221	26	+	.	ID=2137;Type=deletion;Left=chr17:45782532-45783064;Right=chr17:45782916-45783221
chr17	CG	SV	53042810	53045138	27	.	.	ID=2135;Type=deletion;Left=chr17:53042810-53043285+;Right=chr17:53044915-53045138+;Distance=2105;DiscordantMatePairAlignments=27;LeftRepeat=AluSg:SINE:Alu;RightRepeat=;LeftGenes=NM_138962:+;NM_170721:+;RightGenes=NM_138962:+;NM_170721:+;XRef=;Frequency=0.88
chr17	CG	SV	53042810	53043285	27	+	.	ID=2135;Type=deletion;Left=chr17:53042810-53043285;Right=chr17:53044915-53045138
chr17	CG	SV	53044915	53045138	27	+	.	ID=2135;Type=deletion;Left=chr17:53042810-53043285;Right=chr17:53044915-53045138
chr17	CG	SV	55235659	55386414	12	.	.	ID=1033;Type=tandem-duplication;Left=chr17:55235659-55236003-;Right=chr17:55386043-55386414-;Distance=150411;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_030938:+;RightGenes=NM_016125:-;XRef=;Frequency=0.00
chr17	CG	SV	55235659	55236003	12	-	.	ID=1033;Type=tandem-duplication;Left=chr17:55235659-55236003;Right=chr17:55386043-55386414
chr17	CG	SV	55386043	55386414	12	-	.	ID=1033;Type=tandem-duplication;Left=chr17:55235659-55236003;Right=chr17:55386043-55386414
chr17	CG	SV	65468901	65469678	108	.	.	ID=1031;Type=tandem-duplication;Left=chr17:65468901-65469279-;Right=chr17:65469255-65469678-;Distance=399;DiscordantMatePairAlignments=108;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr17	CG	SV	65468901	65469279	108	-	.	ID=1031;Type=tandem-duplication;Left=chr17:65468901-65469279;Right=chr17:65469255-65469678
chr17	CG	SV	65469255	65469678	108	-	.	ID=1031;Type=tandem-duplication;Left=chr17:65468901-65469279;Right=chr17:65469255-65469678
chr17	CG	SV	65536273	65536914	16	.	.	ID=1030;Type=tandem-duplication;Left=chr17:65536273-65536607-;Right=chr17:65536592-65536914-;Distance=307;DiscordantMatePairAlignments=16;LeftRepeat=L1P4e:LINE:L1;RightRepeat=L1P4e:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr17	CG	SV	65536273	65536607	16	-	.	ID=1030;Type=tandem-duplication;Left=chr17:65536273-65536607;Right=chr17:65536592-65536914
chr17	CG	SV	65536592	65536914	16	-	.	ID=1030;Type=tandem-duplication;Left=chr17:65536273-65536607;Right=chr17:65536592-65536914
chr17	CG	SV	69234127	69234897	11	.	.	ID=2127;Type=deletion;Left=chr17:69234127-69234481+;Right=chr17:69234633-69234897+;Distance=506;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 46;RightRepeat=Self chain;Tandem period 46;LeftGenes=;RightGenes=;XRef=rs72123924 (chr17:69233997-69234457);Frequency=0.47
chr17	CG	SV	69234127	69234481	11	+	.	ID=2127;Type=deletion;Left=chr17:69234127-69234481;Right=chr17:69234633-69234897
chr17	CG	SV	69234633	69234897	11	+	.	ID=2127;Type=deletion;Left=chr17:69234127-69234481;Right=chr17:69234633-69234897
chr17	CG	SV	76076427	76078761	28	.	.	ID=2123;Type=deletion;Left=chr17:76076427-76076782+;Right=chr17:76078383-76078761+;Distance=1956;DiscordantMatePairAlignments=28;LeftRepeat=G-rich:Low_complexity:Low_complexity;Tandem period 18;Tandem period 36;RightRepeat=G-rich:Low_complexity:Low_complexity;Tandem period 18;Tandem period 36;LeftGenes=;RightGenes=;XRef=;Frequency=0.25
chr17	CG	SV	76076427	76076782	28	+	.	ID=2123;Type=deletion;Left=chr17:76076427-76076782;Right=chr17:76078383-76078761
chr17	CG	SV	76078383	76078761	28	+	.	ID=2123;Type=deletion;Left=chr17:76076427-76076782;Right=chr17:76078383-76078761
chr17	CG	SV	78653184	78654730	121	.	.	ID=2122;Type=deletion;Left=chr17:78653184-78653679+;Right=chr17:78654274-78654730+;Distance=1090;DiscordantMatePairAlignments=121;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72246678 (chr17:78653184-78654274);Frequency=0.59
chr17	CG	SV	78653184	78653679	121	+	.	ID=2122;Type=deletion;Left=chr17:78653184-78653679;Right=chr17:78654274-78654730
chr17	CG	SV	78654274	78654730	121	+	.	ID=2122;Type=deletion;Left=chr17:78653184-78653679;Right=chr17:78654274-78654730
chr18	CG	SV	97880	99099	134	.	.	ID=985;Type=complex;Left=chr18:97880-98486-;Right=chr18:98653-99099-;Distance=613;DiscordantMatePairAlignments=134;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr18	CG	SV	97880	98486	134	-	.	ID=985;Type=complex;Left=chr18:97880-98486;Right=chr18:98653-99099
chr18	CG	SV	98653	99099	134	-	.	ID=985;Type=complex;Left=chr18:97880-98486;Right=chr18:98653-99099
chr18	CG	SV	98927	101622	28	.	.	ID=2102;Type=complex;Left=chr18:98927-99406+;Right=chr18:101079-101622+;Distance=2152;DiscordantMatePairAlignments=28;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	98927	99406	28	+	.	ID=2102;Type=complex;Left=chr18:98927-99406;Right=chr18:101079-101622
chr18	CG	SV	101079	101622	28	+	.	ID=2102;Type=complex;Left=chr18:98927-99406;Right=chr18:101079-101622
chr18	CG	SV	5314645	5316688	25	.	.	ID=2093;Type=deletion;Left=chr18:5314645-5315063+;Right=chr18:5316244-5316688+;Distance=1599;DiscordantMatePairAlignments=25;LeftRepeat=;RightRepeat=L1PA11:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71657028 (chr18:5314645-5316244);Frequency=0.94
chr18	CG	SV	5314645	5315063	25	+	.	ID=2093;Type=deletion;Left=chr18:5314645-5315063;Right=chr18:5316244-5316688
chr18	CG	SV	5316244	5316688	25	+	.	ID=2093;Type=deletion;Left=chr18:5314645-5315063;Right=chr18:5316244-5316688
chr18	CG	SV	20244740	20246368	158	.	.	ID=2083;Type=deletion;Left=chr18:20244740-20245193+;Right=chr18:20246045-20246368+;Distance=1305;DiscordantMatePairAlignments=158;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr18	CG	SV	20244740	20245193	158	+	.	ID=2083;Type=deletion;Left=chr18:20244740-20245193;Right=chr18:20246045-20246368
chr18	CG	SV	20246045	20246368	158	+	.	ID=2083;Type=deletion;Left=chr18:20244740-20245193;Right=chr18:20246045-20246368
chr18	CG	SV	31924384	31927560	41	.	.	ID=2077;Type=deletion;Left=chr18:31924384-31924710+;Right=chr18:31927139-31927560+;Distance=2755;DiscordantMatePairAlignments=41;LeftRepeat=AluSx:SINE:Alu;RightRepeat=MER90a:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	31924384	31924710	41	+	.	ID=2077;Type=deletion;Left=chr18:31924384-31924710;Right=chr18:31927139-31927560
chr18	CG	SV	31927139	31927560	41	+	.	ID=2077;Type=deletion;Left=chr18:31924384-31924710;Right=chr18:31927139-31927560
chr18	CG	SV	33560058	33561076	145	.	.	ID=2075;Type=deletion;Left=chr18:33560058-33560594+;Right=chr18:33560630-33561076+;Distance=572;DiscordantMatePairAlignments=145;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68016188 (chr18:33560058-33560620);Frequency=0.71
chr18	CG	SV	33560058	33560594	145	+	.	ID=2075;Type=deletion;Left=chr18:33560058-33560594;Right=chr18:33560630-33561076
chr18	CG	SV	33560630	33561076	145	+	.	ID=2075;Type=deletion;Left=chr18:33560058-33560594;Right=chr18:33560630-33561076
chr18	CG	SV	39285550	39287094	73	.	.	ID=2071;Type=deletion;Left=chr18:39285550-39285899+;Right=chr18:39286534-39287094+;Distance=984;DiscordantMatePairAlignments=73;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72163979 (chr18:39285542-39286526);Frequency=0.88
chr18	CG	SV	39285550	39285899	73	+	.	ID=2071;Type=deletion;Left=chr18:39285550-39285899;Right=chr18:39286534-39287094
chr18	CG	SV	39286534	39287094	73	+	.	ID=2071;Type=deletion;Left=chr18:39285550-39285899;Right=chr18:39286534-39287094
chr18	CG	SV	41515012	41515895	18	.	.	ID=2070;Type=deletion;Left=chr18:41515012-41515506+;Right=chr18:41515337-41515895+;Distance=325;DiscordantMatePairAlignments=18;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_007163:+;RightGenes=NM_007163:+;XRef=rs68176567 (chr18:41515001-41515326);Frequency=1.00
chr18	CG	SV	41515012	41515506	18	+	.	ID=2070;Type=deletion;Left=chr18:41515012-41515506;Right=chr18:41515337-41515895
chr18	CG	SV	41515337	41515895	18	+	.	ID=2070;Type=deletion;Left=chr18:41515012-41515506;Right=chr18:41515337-41515895
chr18	CG	SV	42592431	42593135	13	.	.	ID=2069;Type=deletion;Left=chr18:42592431-42592924+;Right=chr18:42592768-42593135+;Distance=337;DiscordantMatePairAlignments=13;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67755507 (chr18:42592415-42592752);Frequency=0.94
chr18	CG	SV	42592431	42592924	13	+	.	ID=2069;Type=deletion;Left=chr18:42592431-42592924;Right=chr18:42592768-42593135
chr18	CG	SV	42592768	42593135	13	+	.	ID=2069;Type=deletion;Left=chr18:42592431-42592924;Right=chr18:42592768-42593135
chr18	CG	SV	45273866	45274570	10	.	.	ID=2067;Type=deletion;Left=chr18:45273866-45274403+;Right=chr18:45274188-45274570+;Distance=322;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs33917211 (chr18:45273849-45274171);Frequency=0.82
chr18	CG	SV	45273866	45274403	10	+	.	ID=2067;Type=deletion;Left=chr18:45273866-45274403;Right=chr18:45274188-45274570
chr18	CG	SV	45274188	45274570	10	+	.	ID=2067;Type=deletion;Left=chr18:45273866-45274403;Right=chr18:45274188-45274570
chr18	CG	SV	48716565	48717449	23	.	.	ID=2066;Type=deletion;Left=chr18:48716565-48717000+;Right=chr18:48717030-48717449+;Distance=465;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=;LeftGenes=NM_005215:+;RightGenes=NM_005215:+;XRef=rs72465148 (chr18:48716563-48717028);Frequency=0.53
chr18	CG	SV	48716565	48717000	23	+	.	ID=2066;Type=deletion;Left=chr18:48716565-48717000;Right=chr18:48717030-48717449
chr18	CG	SV	48717030	48717449	23	+	.	ID=2066;Type=deletion;Left=chr18:48716565-48717000;Right=chr18:48717030-48717449
chr18	CG	SV	49390403	49392277	77	.	.	ID=2064;Type=deletion;Left=chr18:49390403-49390818+;Right=chr18:49391772-49392277+;Distance=1369;DiscordantMatePairAlignments=77;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr18	CG	SV	49390403	49390818	77	+	.	ID=2064;Type=deletion;Left=chr18:49390403-49390818;Right=chr18:49391772-49392277
chr18	CG	SV	49391772	49392277	77	+	.	ID=2064;Type=deletion;Left=chr18:49390403-49390818;Right=chr18:49391772-49392277
chr18	CG	SV	49459967	49465016	88	.	.	ID=2063;Type=deletion;Left=chr18:49459967-49460377+;Right=chr18:49464572-49465016+;Distance=4605;DiscordantMatePairAlignments=88;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr18	CG	SV	49459967	49460377	88	+	.	ID=2063;Type=deletion;Left=chr18:49459967-49460377;Right=chr18:49464572-49465016
chr18	CG	SV	49464572	49465016	88	+	.	ID=2063;Type=deletion;Left=chr18:49459967-49460377;Right=chr18:49464572-49465016
chr18	CG	SV	50206966	50211415	126	.	.	ID=2062;Type=deletion;Left=chr18:50206966-50207462+;Right=chr18:50210962-50211415+;Distance=3996;DiscordantMatePairAlignments=126;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67019264 (chr18:50206966-50210962);Frequency=0.94
chr18	CG	SV	50206966	50207462	126	+	.	ID=2062;Type=deletion;Left=chr18:50206966-50207462;Right=chr18:50210962-50211415
chr18	CG	SV	50210962	50211415	126	+	.	ID=2062;Type=deletion;Left=chr18:50206966-50207462;Right=chr18:50210962-50211415
chr18	CG	SV	53097735	53100265	195	.	.	ID=2061;Type=deletion;Left=chr18:53097735-53098203+;Right=chr18:53099715-53100265+;Distance=1980;DiscordantMatePairAlignments=195;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66803181 (chr18:53097735-53099715);Frequency=1.00
chr18	CG	SV	53097735	53098203	195	+	.	ID=2061;Type=deletion;Left=chr18:53097735-53098203;Right=chr18:53099715-53100265
chr18	CG	SV	53099715	53100265	195	+	.	ID=2061;Type=deletion;Left=chr18:53097735-53098203;Right=chr18:53099715-53100265
chr18	CG	SV	53328464	53329290	12	.	.	ID=2060;Type=deletion;Left=chr18:53328464-53328970+;Right=chr18:53329092-53329290+;Distance=628;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;Tandem period 313;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr18	CG	SV	53328464	53328970	12	+	.	ID=2060;Type=deletion;Left=chr18:53328464-53328970;Right=chr18:53329092-53329290
chr18	CG	SV	53329092	53329290	12	+	.	ID=2060;Type=deletion;Left=chr18:53328464-53328970;Right=chr18:53329092-53329290
chr18	CG	SV	53340647	53511875	11	.	.	ID=961;Type=tandem-duplication;Left=chr18:53340647-53340890-;Right=chr18:53511397-53511875-;Distance=170985;DiscordantMatePairAlignments=11;LeftRepeat=MLT1J2:LTR:MaLR;SegDup;Self chain;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=NM_005603:-;XRef=;Frequency=0.00
chr18	CG	SV	53340647	53340890	11	-	.	ID=961;Type=tandem-duplication;Left=chr18:53340647-53340890;Right=chr18:53511397-53511875
chr18	CG	SV	53511397	53511875	11	-	.	ID=961;Type=tandem-duplication;Left=chr18:53340647-53340890;Right=chr18:53511397-53511875
chr18	CG	SV	57823773	57825484	14	.	.	ID=2054;Type=deletion;Left=chr18:57823773-57824211+;Right=chr18:57825232-57825484+;Distance=1459;DiscordantMatePairAlignments=14;LeftRepeat=THE1A:LTR:MaLR;RightRepeat=THE1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr18	CG	SV	57823773	57824211	14	+	.	ID=2054;Type=deletion;Left=chr18:57823773-57824211;Right=chr18:57825232-57825484
chr18	CG	SV	57825232	57825484	14	+	.	ID=2054;Type=deletion;Left=chr18:57823773-57824211;Right=chr18:57825232-57825484
chr18	CG	SV	59036620	59037004	30	.	.	ID=959;Type=tandem-duplication;Left=chr18:59036620-59036817-;Right=chr18:59036805-59037004-;Distance=187;DiscordantMatePairAlignments=30;LeftRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Tandem period 17;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Tandem period 17;LeftGenes=NM_000633:-;RightGenes=NM_000633:-;XRef=;Frequency=1.00
chr18	CG	SV	59036620	59036817	30	-	.	ID=959;Type=tandem-duplication;Left=chr18:59036620-59036817;Right=chr18:59036805-59037004
chr18	CG	SV	59036805	59037004	30	-	.	ID=959;Type=tandem-duplication;Left=chr18:59036620-59036817;Right=chr18:59036805-59037004
chr18	CG	SV	61684234	61685014	13	.	.	ID=2052;Type=deletion;Left=chr18:61684234-61684716+;Right=chr18:61684578-61685014+;Distance=344;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_004361:+;NM_033646:+;RightGenes=NM_004361:+;NM_033646:+;XRef=rs71170298 (chr18:61684234-61684578);Frequency=1.00
chr18	CG	SV	61684234	61684716	13	+	.	ID=2052;Type=deletion;Left=chr18:61684234-61684716;Right=chr18:61684578-61685014
chr18	CG	SV	61684578	61685014	13	+	.	ID=2052;Type=deletion;Left=chr18:61684234-61684716;Right=chr18:61684578-61685014
chr18	CG	SV	64379937	64380785	15	.	.	ID=2051;Type=deletion;Left=chr18:64379937-64380280+;Right=chr18:64380315-64380785+;Distance=378;DiscordantMatePairAlignments=15;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs6146366 (chr18:64379937-64380315);Frequency=0.53
chr18	CG	SV	64379937	64380280	15	+	.	ID=2051;Type=deletion;Left=chr18:64379937-64380280;Right=chr18:64380315-64380785
chr18	CG	SV	64380315	64380785	15	+	.	ID=2051;Type=deletion;Left=chr18:64379937-64380280;Right=chr18:64380315-64380785
chr18	CG	SV	66997721	66998531	10	.	.	ID=2050;Type=deletion;Left=chr18:66997721-66998057+;Right=chr18:66998055-66998531+;Distance=334;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10705382 (chr18:66997721-66998055);Frequency=0.88
chr18	CG	SV	66997721	66998057	10	+	.	ID=2050;Type=deletion;Left=chr18:66997721-66998057;Right=chr18:66998055-66998531
chr18	CG	SV	66998055	66998531	10	+	.	ID=2050;Type=deletion;Left=chr18:66997721-66998057;Right=chr18:66998055-66998531
chr18	CG	SV	70303422	70304278	10	.	.	ID=2047;Type=deletion;Left=chr18:70303422-70303812+;Right=chr18:70303762-70304278+;Distance=340;DiscordantMatePairAlignments=10;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67940719 (chr18:70303422-70303762);Frequency=1.00
chr18	CG	SV	70303422	70303812	10	+	.	ID=2047;Type=deletion;Left=chr18:70303422-70303812;Right=chr18:70303762-70304278
chr18	CG	SV	70303762	70304278	10	+	.	ID=2047;Type=deletion;Left=chr18:70303422-70303812;Right=chr18:70303762-70304278
chr18	CG	SV	72476185	72477409	167	.	.	ID=2044;Type=deletion;Left=chr18:72476185-72476672+;Right=chr18:72476985-72477409+;Distance=800;DiscordantMatePairAlignments=167;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr18	CG	SV	72476185	72476672	167	+	.	ID=2044;Type=deletion;Left=chr18:72476185-72476672;Right=chr18:72476985-72477409
chr18	CG	SV	72476985	72477409	167	+	.	ID=2044;Type=deletion;Left=chr18:72476185-72476672;Right=chr18:72476985-72477409
chr18	CG	SV	73395986	73397608	89	.	.	ID=2042;Type=deletion;Left=chr18:73395986-73396577+;Right=chr18:73397148-73397608+;Distance=1162;DiscordantMatePairAlignments=89;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66626305 (chr18:73395985-73397147);Frequency=0.82
chr18	CG	SV	73395986	73396577	89	+	.	ID=2042;Type=deletion;Left=chr18:73395986-73396577;Right=chr18:73397148-73397608
chr18	CG	SV	73397148	73397608	89	+	.	ID=2042;Type=deletion;Left=chr18:73395986-73396577;Right=chr18:73397148-73397608
chr18	CG	SV	74763435	74767797	69	.	.	ID=2041;Type=deletion;Left=chr18:74763435-74763907+;Right=chr18:74767312-74767797+;Distance=3877;DiscordantMatePairAlignments=69;LeftRepeat=Self chain;Tandem period 48;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72010801 (chr18:74763476-74767311);Frequency=0.29
chr18	CG	SV	74763435	74763907	69	+	.	ID=2041;Type=deletion;Left=chr18:74763435-74763907;Right=chr18:74767312-74767797
chr18	CG	SV	74767312	74767797	69	+	.	ID=2041;Type=deletion;Left=chr18:74763435-74763907;Right=chr18:74767312-74767797
chr18	CG	SV	75061607	75061750	318	.	.	ID=955;Type=tandem-duplication;Left=chr18:75061607-75061691-;Right=chr18:75061668-75061750-;Distance=59;DiscordantMatePairAlignments=318;LeftRepeat=Self chain;Tandem period 33;RightRepeat=G-rich:Low_complexity:Low_complexity;Self chain;Tandem period 33;LeftGenes=NM_198531:+;RightGenes=NM_198531:+;XRef=;Frequency=1.00
chr18	CG	SV	75061607	75061691	318	-	.	ID=955;Type=tandem-duplication;Left=chr18:75061607-75061691;Right=chr18:75061668-75061750
chr18	CG	SV	75061668	75061750	318	-	.	ID=955;Type=tandem-duplication;Left=chr18:75061607-75061691;Right=chr18:75061668-75061750
chr18	CG	SV	75410949	75413652	153	.	.	ID=2040;Type=deletion;Left=chr18:75410949-75411540+;Right=chr18:75413089-75413652+;Distance=2140;DiscordantMatePairAlignments=153;LeftRepeat=Self chain;Tandem period 54;RightRepeat=Self chain;Tandem period 54;LeftGenes=;RightGenes=;XRef=rs71172180 (chr18:75410938-75413079);Frequency=0.59
chr18	CG	SV	75410949	75411540	153	+	.	ID=2040;Type=deletion;Left=chr18:75410949-75411540;Right=chr18:75413089-75413652
chr18	CG	SV	75413089	75413652	153	+	.	ID=2040;Type=deletion;Left=chr18:75410949-75411540;Right=chr18:75413089-75413652
chr18	CG	SV	75600839	75601635	11	.	.	ID=2039;Type=deletion;Left=chr18:75600839-75601332+;Right=chr18:75601199-75601635+;Distance=360;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 30;RightRepeat=Self chain;LeftGenes=NM_004715:+;NM_048368:+;RightGenes=NM_004715:+;NM_048368:+;XRef=rs72233585 (chr18:75600764-75601124);Frequency=1.00
chr18	CG	SV	75600839	75601332	11	+	.	ID=2039;Type=deletion;Left=chr18:75600839-75601332;Right=chr18:75601199-75601635
chr18	CG	SV	75601199	75601635	11	+	.	ID=2039;Type=deletion;Left=chr18:75600839-75601332;Right=chr18:75601199-75601635
chr19	CG	SV	1092830	1093305	17	.	.	ID=952;Type=tandem-duplication;Left=chr19:1092830-1093016-;Right=chr19:1093050-1093305-;Distance=289;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem period 30;RightRepeat=Self chain;LeftGenes=NM_014963:-;RightGenes=NM_014963:-;XRef=;Frequency=1.00
chr19	CG	SV	1092830	1093016	17	-	.	ID=952;Type=tandem-duplication;Left=chr19:1092830-1093016;Right=chr19:1093050-1093305
chr19	CG	SV	1093050	1093305	17	-	.	ID=952;Type=tandem-duplication;Left=chr19:1092830-1093016;Right=chr19:1093050-1093305
chr19	CG	SV	2058596	2200476	79	.	.	ID=951;Type=tandem-duplication;Left=chr19:2058596-2058995-;Right=chr19:2199966-2200476-;Distance=141481;DiscordantMatePairAlignments=79;LeftRepeat=L1MD:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_001077523:-;NM_003938:-;RightGenes=NM_000479:+;XRef=;Frequency=0.00
chr19	CG	SV	2058596	2058995	79	-	.	ID=951;Type=tandem-duplication;Left=chr19:2058596-2058995;Right=chr19:2199966-2200476
chr19	CG	SV	2199966	2200476	79	-	.	ID=951;Type=tandem-duplication;Left=chr19:2058596-2058995;Right=chr19:2199966-2200476
chr19	CG	SV	4569619	4571076	94	.	.	ID=2037;Type=deletion;Left=chr19:4569619-4570198+;Right=chr19:4570603-4571076+;Distance=984;DiscordantMatePairAlignments=94;LeftRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 17;RightRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 17;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr19	CG	SV	4569619	4570198	94	+	.	ID=2037;Type=deletion;Left=chr19:4569619-4570198;Right=chr19:4570603-4571076
chr19	CG	SV	4570603	4571076	94	+	.	ID=2037;Type=deletion;Left=chr19:4569619-4570198;Right=chr19:4570603-4571076
chr19	CG	SV	4690131	4690702	11	.	.	ID=4133;Type=probable-inversion;Left=chr19:4690131-4690357+;Right=chr19:4690419-4690702-;Distance=571;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr19	CG	SV	4690131	4690357	11	+	.	ID=4133;Type=probable-inversion;Left=chr19:4690131-4690357;Right=chr19:4690419-4690702
chr19	CG	SV	4690419	4690702	11	+	.	ID=4133;Type=probable-inversion;Left=chr19:4690131-4690357;Right=chr19:4690419-4690702
chr19	CG	SV	8420425	8421247	11	.	.	ID=2034;Type=deletion;Left=chr19:8420425-8420872+;Right=chr19:8420732-8421247+;Distance=307;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_005968:+;NM_031203:+;RightGenes=NM_005968:+;NM_031203:+;XRef=rs71166204 (chr19:8420425-8420732);Frequency=1.00
chr19	CG	SV	8420425	8420872	11	+	.	ID=2034;Type=deletion;Left=chr19:8420425-8420872;Right=chr19:8420732-8421247
chr19	CG	SV	8420732	8421247	11	+	.	ID=2034;Type=deletion;Left=chr19:8420425-8420872;Right=chr19:8420732-8421247
chr19	CG	SV	14567225	14567835	12	.	.	ID=948;Type=tandem-duplication;Left=chr19:14567225-14567528-;Right=chr19:14567529-14567835-;Distance=307;DiscordantMatePairAlignments=12;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=NM_207390:+;RightGenes=NM_207390:+;XRef=;Frequency=0.82
chr19	CG	SV	14567225	14567528	12	-	.	ID=948;Type=tandem-duplication;Left=chr19:14567225-14567528;Right=chr19:14567529-14567835
chr19	CG	SV	14567529	14567835	12	-	.	ID=948;Type=tandem-duplication;Left=chr19:14567225-14567528;Right=chr19:14567529-14567835
chr19	CG	SV	14907392	14910959	60	.	.	ID=2031;Type=deletion;Left=chr19:14907392-14907746+;Right=chr19:14910478-14910959+;Distance=3086;DiscordantMatePairAlignments=60;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr19	CG	SV	14907392	14907746	60	+	.	ID=2031;Type=deletion;Left=chr19:14907392-14907746;Right=chr19:14910478-14910959
chr19	CG	SV	14910478	14910959	60	+	.	ID=2031;Type=deletion;Left=chr19:14907392-14907746;Right=chr19:14910478-14910959
chr19	CG	SV	17303256	17311547	13	.	.	ID=947;Type=tandem-duplication;Left=chr19:17303256-17303743-;Right=chr19:17311398-17311547-;Distance=7804;DiscordantMatePairAlignments=13;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_020959:-;RightGenes=NM_001128855:+;NM_032620:+;NM_133644:+;XRef=;Frequency=0.00
chr19	CG	SV	17303256	17303743	13	-	.	ID=947;Type=tandem-duplication;Left=chr19:17303256-17303743;Right=chr19:17311398-17311547
chr19	CG	SV	17311398	17311547	13	-	.	ID=947;Type=tandem-duplication;Left=chr19:17303256-17303743;Right=chr19:17311398-17311547
chr19	CG	SV	20377009	20380160	11	.	.	ID=2029;Type=deletion;Left=chr19:20377009-20377385+;Right=chr19:20379861-20380160+;Distance=2852;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=L1MB2:LINE:L1;Self chain;LeftGenes=NM_001039884:-;RightGenes=NM_001039884:-;XRef=rs72102339 (chr19:20377009-20379861);Frequency=0.88
chr19	CG	SV	20377009	20377385	11	+	.	ID=2029;Type=deletion;Left=chr19:20377009-20377385;Right=chr19:20379861-20380160
chr19	CG	SV	20379861	20380160	11	+	.	ID=2029;Type=deletion;Left=chr19:20377009-20377385;Right=chr19:20379861-20380160
chr19	CG	SV	21542570	21543997	24	.	.	ID=2028;Type=deletion;Left=chr19:21542570-21542917+;Right=chr19:21543553-21543997+;Distance=983;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr19	CG	SV	21542570	21542917	24	+	.	ID=2028;Type=deletion;Left=chr19:21542570-21542917;Right=chr19:21543553-21543997
chr19	CG	SV	21543553	21543997	24	+	.	ID=2028;Type=deletion;Left=chr19:21542570-21542917;Right=chr19:21543553-21543997
chr19	CG	SV	34642028	34648427	64	.	.	ID=2000;Type=deletion;Left=chr19:34642028-34642483+;Right=chr19:34648011-34648427+;Distance=5983;DiscordantMatePairAlignments=64;LeftRepeat=HAL1b:LINE:L1;Self chain;RightRepeat=HAL1b:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs72413604 (chr19:34642037-34648020);Frequency=0.59
chr19	CG	SV	34642028	34642483	64	+	.	ID=2000;Type=deletion;Left=chr19:34642028-34642483;Right=chr19:34648011-34648427
chr19	CG	SV	34648011	34648427	64	+	.	ID=2000;Type=deletion;Left=chr19:34642028-34642483;Right=chr19:34648011-34648427
chr19	CG	SV	35080644	35085458	49	.	.	ID=1999;Type=deletion;Left=chr19:35080644-35081181+;Right=chr19:35084954-35085458+;Distance=4310;DiscordantMatePairAlignments=49;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem ATTTTT;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	35080644	35081181	49	+	.	ID=1999;Type=deletion;Left=chr19:35080644-35081181;Right=chr19:35084954-35085458
chr19	CG	SV	35084954	35085458	49	+	.	ID=1999;Type=deletion;Left=chr19:35080644-35081181;Right=chr19:35084954-35085458
chr19	CG	SV	35979345	35981964	14	.	.	ID=1998;Type=deletion;Left=chr19:35979345-35979831+;Right=chr19:35981618-35981964+;Distance=2273;DiscordantMatePairAlignments=14;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr19	CG	SV	35979345	35979831	14	+	.	ID=1998;Type=deletion;Left=chr19:35979345-35979831;Right=chr19:35981618-35981964
chr19	CG	SV	35981618	35981964	14	+	.	ID=1998;Type=deletion;Left=chr19:35979345-35979831;Right=chr19:35981618-35981964
chr19	CG	SV	36444436	36758282	49	.	.	ID=919;Type=tandem-duplication;Left=chr19:36444436-36444847-;Right=chr19:36757880-36758282-;Distance=313435;DiscordantMatePairAlignments=49;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	36444436	36444847	49	-	.	ID=919;Type=tandem-duplication;Left=chr19:36444436-36444847;Right=chr19:36757880-36758282
chr19	CG	SV	36757880	36758282	49	-	.	ID=919;Type=tandem-duplication;Left=chr19:36444436-36444847;Right=chr19:36757880-36758282
chr19	CG	SV	37778473	37779241	39	.	.	ID=918;Type=tandem-duplication;Left=chr19:37778473-37778751-;Right=chr19:37778911-37779241-;Distance=490;DiscordantMatePairAlignments=39;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr19	CG	SV	37778473	37778751	39	-	.	ID=918;Type=tandem-duplication;Left=chr19:37778473-37778751;Right=chr19:37778911-37779241
chr19	CG	SV	37778911	37779241	39	-	.	ID=918;Type=tandem-duplication;Left=chr19:37778473-37778751;Right=chr19:37778911-37779241
chr19	CG	SV	42152628	42153493	19	.	.	ID=1997;Type=deletion;Left=chr19:42152628-42153097+;Right=chr19:42153179-42153493+;Distance=551;DiscordantMatePairAlignments=19;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr19	CG	SV	42152628	42153097	19	+	.	ID=1997;Type=deletion;Left=chr19:42152628-42153097;Right=chr19:42153179-42153493
chr19	CG	SV	42153179	42153493	19	+	.	ID=1997;Type=deletion;Left=chr19:42152628-42153097;Right=chr19:42153179-42153493
chr19	CG	SV	48220657	48548654	40	.	.	ID=917;Type=tandem-duplication;Left=chr19:48220657-48220955-;Right=chr19:48548167-48548654-;Distance=327699;DiscordantMatePairAlignments=40;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=NM_001113410:-;NM_002785:-;NM_203287:-;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	48220657	48220955	40	-	.	ID=917;Type=tandem-duplication;Left=chr19:48220657-48220955;Right=chr19:48548167-48548654
chr19	CG	SV	48548167	48548654	40	-	.	ID=917;Type=tandem-duplication;Left=chr19:48220657-48220955;Right=chr19:48548167-48548654
chr19	CG	SV	48874698	48875794	41	.	.	ID=916;Type=tandem-duplication;Left=chr19:48874698-48875206-;Right=chr19:48875527-48875794-;Distance=588;DiscordantMatePairAlignments=41;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	48874698	48875206	41	-	.	ID=916;Type=tandem-duplication;Left=chr19:48874698-48875206;Right=chr19:48875527-48875794
chr19	CG	SV	48875527	48875794	41	-	.	ID=916;Type=tandem-duplication;Left=chr19:48874698-48875206;Right=chr19:48875527-48875794
chr19	CG	SV	57787834	57789572	10	.	.	ID=1993;Type=deletion;Left=chr19:57787834-57788295+;Right=chr19:57789436-57789572+;Distance=1602;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72196700 (chr19:57787818-57789420);Frequency=0.47
chr19	CG	SV	57787834	57788295	10	+	.	ID=1993;Type=deletion;Left=chr19:57787834-57788295;Right=chr19:57789436-57789572
chr19	CG	SV	57789436	57789572	10	+	.	ID=1993;Type=deletion;Left=chr19:57787834-57788295;Right=chr19:57789436-57789572
chr19	CG	SV	58114026	58116442	24	.	.	ID=1992;Type=deletion;Left=chr19:58114026-58114502+;Right=chr19:58116036-58116442+;Distance=2010;DiscordantMatePairAlignments=24;LeftRepeat=SVA:Other:Other;Self chain;Tandem TCTCCC;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr19	CG	SV	58114026	58114502	24	+	.	ID=1992;Type=deletion;Left=chr19:58114026-58114502;Right=chr19:58116036-58116442
chr19	CG	SV	58116036	58116442	24	+	.	ID=1992;Type=deletion;Left=chr19:58114026-58114502;Right=chr19:58116036-58116442
chr19	CG	SV	58380998	58384264	61	.	.	ID=1991;Type=deletion;Left=chr19:58380998-58381295+;Right=chr19:58383890-58384264+;Distance=2892;DiscordantMatePairAlignments=61;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;Tandem T;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_024733:-;RightGenes=NM_024733:-;XRef=;Frequency=1.00
chr19	CG	SV	58380998	58381295	61	+	.	ID=1991;Type=deletion;Left=chr19:58380998-58381295;Right=chr19:58383890-58384264
chr19	CG	SV	58383890	58384264	61	+	.	ID=1991;Type=deletion;Left=chr19:58380998-58381295;Right=chr19:58383890-58384264
chr19	CG	SV	60296595	60297724	10	.	.	ID=1990;Type=deletion;Left=chr19:60296595-60297008+;Right=chr19:60297502-60297724+;Distance=907;DiscordantMatePairAlignments=10;LeftRepeat=MSR1:Satellite:Satellite;Self chain;Tandem period 109;Tandem period 36;Tandem period 73;RightRepeat=MSR1:Satellite:Satellite;Self chain;Tandem period 109;Tandem period 36;Tandem period 73;LeftGenes=NM_017607:-;RightGenes=NM_017607:-;XRef=;Frequency=0.82
chr19	CG	SV	60296595	60297008	10	+	.	ID=1990;Type=deletion;Left=chr19:60296595-60297008;Right=chr19:60297502-60297724
chr19	CG	SV	60297502	60297724	10	+	.	ID=1990;Type=deletion;Left=chr19:60296595-60297008;Right=chr19:60297502-60297724
chr19	CG	SV	60733675	60734531	30	.	.	ID=1988;Type=deletion;Left=chr19:60733675-60734181+;Right=chr19:60734011-60734531+;Distance=336;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;Tandem period 131;Tandem period 168;Tandem period 19;Tandem period 57;RightRepeat=Self chain;Tandem period 37;Tandem period 38;LeftGenes=NM_001101401:-;RightGenes=NM_001101401:-;XRef=rs71171963 (chr19:60733648-60733984);Frequency=1.00
chr19	CG	SV	60733675	60734181	30	+	.	ID=1988;Type=deletion;Left=chr19:60733675-60734181;Right=chr19:60734011-60734531
chr19	CG	SV	60734011	60734531	30	+	.	ID=1988;Type=deletion;Left=chr19:60733675-60734181;Right=chr19:60734011-60734531
chr19	CG	SV	61283182	61283995	16	.	.	ID=1987;Type=deletion;Left=chr19:61283182-61283673+;Right=chr19:61283872-61283995+;Distance=690;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 69;RightRepeat=Self chain;Tandem period 69;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	61283182	61283673	16	+	.	ID=1987;Type=deletion;Left=chr19:61283182-61283673;Right=chr19:61283872-61283995
chr19	CG	SV	61283872	61283995	16	+	.	ID=1987;Type=deletion;Left=chr19:61283182-61283673;Right=chr19:61283872-61283995
chr19	CG	SV	61509549	61510551	23	.	.	ID=1986;Type=deletion;Left=chr19:61509549-61509861+;Right=chr19:61510389-61510551+;Distance=840;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;Tandem period 84;RightRepeat=Self chain;Tandem period 84;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr19	CG	SV	61509549	61509861	23	+	.	ID=1986;Type=deletion;Left=chr19:61509549-61509861;Right=chr19:61510389-61510551
chr19	CG	SV	61510389	61510551	23	+	.	ID=1986;Type=deletion;Left=chr19:61509549-61509861;Right=chr19:61510389-61510551
chr19	CG	SV	61558270	61562256	56	.	.	ID=1985;Type=deletion;Left=chr19:61558270-61558797+;Right=chr19:61561735-61562256+;Distance=3465;DiscordantMatePairAlignments=56;LeftRepeat=Self chain;RightRepeat=L1PA10:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs72037353 (chr19:61558270-61561735);Frequency=0.12
chr19	CG	SV	61558270	61558797	56	+	.	ID=1985;Type=deletion;Left=chr19:61558270-61558797;Right=chr19:61561735-61562256
chr19	CG	SV	61561735	61562256	56	+	.	ID=1985;Type=deletion;Left=chr19:61558270-61558797;Right=chr19:61561735-61562256
chr20	CG	SV	1337146	1339260	72	.	.	ID=1983;Type=deletion;Left=chr20:1337146-1337668+;Right=chr20:1338817-1339260+;Distance=1671;DiscordantMatePairAlignments=72;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs66897164 (chr20:1337143-1338814);Frequency=0.94
chr20	CG	SV	1337146	1337668	72	+	.	ID=1983;Type=deletion;Left=chr20:1337146-1337668;Right=chr20:1338817-1339260
chr20	CG	SV	1338817	1339260	72	+	.	ID=1983;Type=deletion;Left=chr20:1337146-1337668;Right=chr20:1338817-1339260
chr20	CG	SV	1943501	1945871	19	.	.	ID=1982;Type=deletion;Left=chr20:1943501-1943897+;Right=chr20:1945532-1945871+;Distance=2031;DiscordantMatePairAlignments=19;LeftRepeat=L1MD2:LINE:L1;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr20	CG	SV	1943501	1943897	19	+	.	ID=1982;Type=deletion;Left=chr20:1943501-1943897;Right=chr20:1945532-1945871
chr20	CG	SV	1945532	1945871	19	+	.	ID=1982;Type=deletion;Left=chr20:1943501-1943897;Right=chr20:1945532-1945871
chr20	CG	SV	2164859	2165103	80	.	.	ID=909;Type=tandem-duplication;Left=chr20:2164859-2164983-;Right=chr20:2164982-2165103-;Distance=120;DiscordantMatePairAlignments=80;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr20	CG	SV	2164859	2164983	80	-	.	ID=909;Type=tandem-duplication;Left=chr20:2164859-2164983;Right=chr20:2164982-2165103
chr20	CG	SV	2164982	2165103	80	-	.	ID=909;Type=tandem-duplication;Left=chr20:2164859-2164983;Right=chr20:2164982-2165103
chr20	CG	SV	2307903	2308954	22	.	.	ID=1981;Type=deletion;Left=chr20:2307903-2308098+;Right=chr20:2308608-2308954+;Distance=705;DiscordantMatePairAlignments=22;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67473611 (chr20:2307903-2308608);Frequency=0.76
chr20	CG	SV	2307903	2308098	22	+	.	ID=1981;Type=deletion;Left=chr20:2307903-2308098;Right=chr20:2308608-2308954
chr20	CG	SV	2308608	2308954	22	+	.	ID=1981;Type=deletion;Left=chr20:2307903-2308098;Right=chr20:2308608-2308954
chr20	CG	SV	14547213	14811810	70	.	.	ID=1973;Type=deletion;Left=chr20:14547213-14547758+;Right=chr20:14811306-14811810+;Distance=264093;DiscordantMatePairAlignments=70;LeftRepeat=;RightRepeat=;LeftGenes=NM_080676:+;RightGenes=NM_080676:+;XRef=;Frequency=0.00
chr20	CG	SV	14547213	14547758	70	+	.	ID=1973;Type=deletion;Left=chr20:14547213-14547758;Right=chr20:14811306-14811810
chr20	CG	SV	14811306	14811810	70	+	.	ID=1973;Type=deletion;Left=chr20:14547213-14547758;Right=chr20:14811306-14811810
chr20	CG	SV	15249734	15252107	58	.	.	ID=1971;Type=deletion;Left=chr20:15249734-15250204+;Right=chr20:15251771-15252107+;Distance=2037;DiscordantMatePairAlignments=58;LeftRepeat=;RightRepeat=;LeftGenes=NM_001033087:+;NM_080676:+;RightGenes=NM_001033087:+;NM_080676:+;XRef=rs71725651 (chr20:15249731-15251768);Frequency=0.47
chr20	CG	SV	15249734	15250204	58	+	.	ID=1971;Type=deletion;Left=chr20:15249734-15250204;Right=chr20:15251771-15252107
chr20	CG	SV	15251771	15252107	58	+	.	ID=1971;Type=deletion;Left=chr20:15249734-15250204;Right=chr20:15251771-15252107
chr20	CG	SV	21234127	21237106	61	.	.	ID=1969;Type=deletion;Left=chr20:21234127-21234665+;Right=chr20:21236809-21237106+;Distance=2682;DiscordantMatePairAlignments=61;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_012255:+;RightGenes=NM_012255:+;XRef=rs67065922 (chr20:21234127-21236809);Frequency=0.88
chr20	CG	SV	21234127	21234665	61	+	.	ID=1969;Type=deletion;Left=chr20:21234127-21234665;Right=chr20:21236809-21237106
chr20	CG	SV	21236809	21237106	61	+	.	ID=1969;Type=deletion;Left=chr20:21234127-21234665;Right=chr20:21236809-21237106
chr20	CG	SV	28252467	28255548	60	.	.	ID=1964;Type=deletion;Left=chr20:28252467-28252938+;Right=chr20:28255068-28255548+;Distance=2601;DiscordantMatePairAlignments=60;LeftRepeat=Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr20	CG	SV	28252467	28252938	60	+	.	ID=1964;Type=deletion;Left=chr20:28252467-28252938;Right=chr20:28255068-28255548
chr20	CG	SV	28255068	28255548	60	+	.	ID=1964;Type=deletion;Left=chr20:28252467-28252938;Right=chr20:28255068-28255548
chr20	CG	SV	32279599	32283360	95	.	.	ID=1961;Type=deletion;Left=chr20:32279599-32280094+;Right=chr20:32282896-32283360+;Distance=3297;DiscordantMatePairAlignments=95;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71190078 (chr20:32279599-32282896);Frequency=1.00
chr20	CG	SV	32279599	32280094	95	+	.	ID=1961;Type=deletion;Left=chr20:32279599-32280094;Right=chr20:32282896-32283360
chr20	CG	SV	32282896	32283360	95	+	.	ID=1961;Type=deletion;Left=chr20:32279599-32280094;Right=chr20:32282896-32283360
chr20	CG	SV	32705600	32708233	31	.	.	ID=1959;Type=deletion;Left=chr20:32705600-32706133+;Right=chr20:32708025-32708233+;Distance=2425;DiscordantMatePairAlignments=31;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_080476:-;RightGenes=NM_080476:-;XRef=rs67282265 (chr20:32705520-32707945);Frequency=0.59
chr20	CG	SV	32705600	32706133	31	+	.	ID=1959;Type=deletion;Left=chr20:32705600-32706133;Right=chr20:32708025-32708233
chr20	CG	SV	32708025	32708233	31	+	.	ID=1959;Type=deletion;Left=chr20:32705600-32706133;Right=chr20:32708025-32708233
chr20	CG	SV	33085327	33086114	13	.	.	ID=1958;Type=deletion;Left=chr20:33085327-33085901+;Right=chr20:33085649-33086114+;Distance=322;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_015638:-;NM_199368:-;RightGenes=NM_015638:-;NM_199368:-;XRef=rs72263875 (chr20:33085327-33085649);Frequency=1.00
chr20	CG	SV	33085327	33085901	13	+	.	ID=1958;Type=deletion;Left=chr20:33085327-33085901;Right=chr20:33085649-33086114
chr20	CG	SV	33085649	33086114	13	+	.	ID=1958;Type=deletion;Left=chr20:33085327-33085901;Right=chr20:33085649-33086114
chr20	CG	SV	39339933	39341346	12	.	.	ID=1957;Type=deletion;Left=chr20:39339933-39340393+;Right=chr20:39341119-39341346+;Distance=1186;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_015035:-;RightGenes=NM_015035:-;XRef=;Frequency=0.06
chr20	CG	SV	39339933	39340393	12	+	.	ID=1957;Type=deletion;Left=chr20:39339933-39340393;Right=chr20:39341119-39341346
chr20	CG	SV	39341119	39341346	12	+	.	ID=1957;Type=deletion;Left=chr20:39339933-39340393;Right=chr20:39341119-39341346
chr20	CG	SV	41458026	41459624	72	.	.	ID=1956;Type=deletion;Left=chr20:41458026-41458515+;Right=chr20:41459224-41459624+;Distance=1198;DiscordantMatePairAlignments=72;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67207892 (chr20:41458026-41459224);Frequency=0.94
chr20	CG	SV	41458026	41458515	72	+	.	ID=1956;Type=deletion;Left=chr20:41458026-41458515;Right=chr20:41459224-41459624
chr20	CG	SV	41459224	41459624	72	+	.	ID=1956;Type=deletion;Left=chr20:41458026-41458515;Right=chr20:41459224-41459624
chr20	CG	SV	41757888	41758816	76	.	.	ID=905;Type=tandem-duplication;Left=chr20:41757888-41758329-;Right=chr20:41758599-41758816-;Distance=487;DiscordantMatePairAlignments=76;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_002466:+;RightGenes=NM_002466:+;XRef=;Frequency=1.00
chr20	CG	SV	41757888	41758329	76	-	.	ID=905;Type=tandem-duplication;Left=chr20:41757888-41758329;Right=chr20:41758599-41758816
chr20	CG	SV	41758599	41758816	76	-	.	ID=905;Type=tandem-duplication;Left=chr20:41757888-41758329;Right=chr20:41758599-41758816
chr20	CG	SV	43637478	43641116	28	.	.	ID=1954;Type=deletion;Left=chr20:43637478-43637873+;Right=chr20:43640716-43641116+;Distance=3238;DiscordantMatePairAlignments=28;LeftRepeat=L1M3:LINE:L1;RightRepeat=;LeftGenes=NM_130896:-;NM_181510:-;RightGenes=NM_130896:-;NM_181510:-;XRef=;Frequency=0.29
chr20	CG	SV	43637478	43637873	28	+	.	ID=1954;Type=deletion;Left=chr20:43637478-43637873;Right=chr20:43640716-43641116
chr20	CG	SV	43640716	43641116	28	+	.	ID=1954;Type=deletion;Left=chr20:43637478-43637873;Right=chr20:43640716-43641116
chr20	CG	SV	43968910	43969641	61	.	.	ID=1953;Type=deletion;Left=chr20:43968910-43969603+;Right=chr20:43969346-43969641+;Distance=436;DiscordantMatePairAlignments=61;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_006227:-;NM_182676:-;RightGenes=NM_006227:-;NM_182676:-;XRef=rs71981103 (chr20:43968778-43969214);Frequency=0.88
chr20	CG	SV	43968910	43969603	61	+	.	ID=1953;Type=deletion;Left=chr20:43968910-43969603;Right=chr20:43969346-43969641
chr20	CG	SV	43969346	43969641	61	+	.	ID=1953;Type=deletion;Left=chr20:43968910-43969603;Right=chr20:43969346-43969641
chr20	CG	SV	46808820	46811527	69	.	.	ID=1952;Type=deletion;Left=chr20:46808820-46809375+;Right=chr20:46811237-46811527+;Distance=2417;DiscordantMatePairAlignments=69;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_020820:-;RightGenes=NM_020820:-;XRef=;Frequency=0.00
chr20	CG	SV	46808820	46809375	69	+	.	ID=1952;Type=deletion;Left=chr20:46808820-46809375;Right=chr20:46811237-46811527
chr20	CG	SV	46811237	46811527	69	+	.	ID=1952;Type=deletion;Left=chr20:46808820-46809375;Right=chr20:46811237-46811527
chr20	CG	SV	52080477	52091763	19	.	.	ID=1932;Type=deletion;Left=chr20:52080477-52080897+;Right=chr20:52091415-52091763+;Distance=10938;DiscordantMatePairAlignments=19;LeftRepeat=;RightRepeat=L1MC4a:LINE:L1;LeftGenes=NM_003657:-;RightGenes=NM_003657:-;XRef=;Frequency=0.29
chr20	CG	SV	52080477	52080897	19	+	.	ID=1932;Type=deletion;Left=chr20:52080477-52080897;Right=chr20:52091415-52091763
chr20	CG	SV	52091415	52091763	19	+	.	ID=1932;Type=deletion;Left=chr20:52080477-52080897;Right=chr20:52091415-52091763
chr20	CG	SV	53868020	53874502	137	.	.	ID=1929;Type=deletion;Left=chr20:53868020-53868508+;Right=chr20:53874026-53874502+;Distance=6006;DiscordantMatePairAlignments=137;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67942761 (chr20:53868017-53874023);Frequency=0.94
chr20	CG	SV	53868020	53868508	137	+	.	ID=1929;Type=deletion;Left=chr20:53868020-53868508;Right=chr20:53874026-53874502
chr20	CG	SV	53874026	53874502	137	+	.	ID=1929;Type=deletion;Left=chr20:53868020-53868508;Right=chr20:53874026-53874502
chr20	CG	SV	55512726	55514296	33	.	.	ID=1928;Type=deletion;Left=chr20:55512726-55513309+;Right=chr20:55514006-55514296+;Distance=1280;DiscordantMatePairAlignments=33;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_080618:-;RightGenes=NM_080618:-;XRef=;Frequency=0.18
chr20	CG	SV	55512726	55513309	33	+	.	ID=1928;Type=deletion;Left=chr20:55512726-55513309;Right=chr20:55514006-55514296
chr20	CG	SV	55514006	55514296	33	+	.	ID=1928;Type=deletion;Left=chr20:55512726-55513309;Right=chr20:55514006-55514296
chr20	CG	SV	57156850	57157715	25	.	.	ID=1926;Type=deletion;Left=chr20:57156850-57157260+;Right=chr20:57157184-57157715+;Distance=334;DiscordantMatePairAlignments=25;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35933436 (chr20:57156839-57157173);Frequency=0.12
chr20	CG	SV	57156850	57157260	25	+	.	ID=1926;Type=deletion;Left=chr20:57156850-57157260;Right=chr20:57157184-57157715
chr20	CG	SV	57157184	57157715	25	+	.	ID=1926;Type=deletion;Left=chr20:57156850-57157260;Right=chr20:57157184-57157715
chr20	CG	SV	58545071	58558647	50	.	.	ID=1924;Type=deletion;Left=chr20:58545071-58545611+;Right=chr20:58558265-58558647+;Distance=13194;DiscordantMatePairAlignments=50;LeftRepeat=AluSq:SINE:Alu;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr20	CG	SV	58545071	58545611	50	+	.	ID=1924;Type=deletion;Left=chr20:58545071-58545611;Right=chr20:58558265-58558647
chr20	CG	SV	58558265	58558647	50	+	.	ID=1924;Type=deletion;Left=chr20:58545071-58545611;Right=chr20:58558265-58558647
chr20	CG	SV	59337604	59337925	18	.	.	ID=900;Type=tandem-duplication;Left=chr20:59337604-59337734-;Right=chr20:59337739-59337925-;Distance=191;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=;LeftGenes=NM_001794:+;RightGenes=NM_001794:+;XRef=;Frequency=0.88
chr20	CG	SV	59337604	59337734	18	-	.	ID=900;Type=tandem-duplication;Left=chr20:59337604-59337734;Right=chr20:59337739-59337925
chr20	CG	SV	59337739	59337925	18	-	.	ID=900;Type=tandem-duplication;Left=chr20:59337604-59337734;Right=chr20:59337739-59337925
chr20	CG	SV	59407575	59408332	10	.	.	ID=1923;Type=deletion;Left=chr20:59407575-59408180+;Right=chr20:59407896-59408332+;Distance=321;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001794:+;RightGenes=NM_001794:+;XRef=rs67418558 (chr20:59407561-59407882);Frequency=0.82
chr20	CG	SV	59407575	59408180	10	+	.	ID=1923;Type=deletion;Left=chr20:59407575-59408180;Right=chr20:59407896-59408332
chr20	CG	SV	59407896	59408332	10	+	.	ID=1923;Type=deletion;Left=chr20:59407575-59408180;Right=chr20:59407896-59408332
chr20	CG	SV	61195143	61196704	236	.	.	ID=1921;Type=deletion;Left=chr20:61195143-61195621+;Right=chr20:61196042-61196704+;Distance=899;DiscordantMatePairAlignments=236;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67749901 (chr20:61195143-61196041);Frequency=1.00
chr20	CG	SV	61195143	61195621	236	+	.	ID=1921;Type=deletion;Left=chr20:61195143-61195621;Right=chr20:61196042-61196704
chr20	CG	SV	61196042	61196704	236	+	.	ID=1921;Type=deletion;Left=chr20:61195143-61195621;Right=chr20:61196042-61196704
chr20	CG	SV	61738061	61738779	10	.	.	ID=1920;Type=deletion;Left=chr20:61738061-61738361+;Right=chr20:61738572-61738779+;Distance=511;DiscordantMatePairAlignments=10;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr20	CG	SV	61738061	61738361	10	+	.	ID=1920;Type=deletion;Left=chr20:61738061-61738361;Right=chr20:61738572-61738779
chr20	CG	SV	61738572	61738779	10	+	.	ID=1920;Type=deletion;Left=chr20:61738061-61738361;Right=chr20:61738572-61738779
chr20	CG	SV	61862531	61863280	43	.	.	ID=1919;Type=deletion;Left=chr20:61862531-61863003+;Right=chr20:61863073-61863280+;Distance=542;DiscordantMatePairAlignments=43;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_025224:-;RightGenes=NM_025224:-;XRef=;Frequency=0.00
chr20	CG	SV	61862531	61863003	43	+	.	ID=1919;Type=deletion;Left=chr20:61862531-61863003;Right=chr20:61863073-61863280
chr20	CG	SV	61863073	61863280	43	+	.	ID=1919;Type=deletion;Left=chr20:61862531-61863003;Right=chr20:61863073-61863280
chr20	CG	SV	61981503	61982419	21	.	.	ID=1918;Type=deletion;Left=chr20:61981503-61981906+;Right=chr20:61982263-61982419+;Distance=760;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;Tandem period 40;RightRepeat=Self chain;Tandem period 40;LeftGenes=NM_003288:+;NM_199359:+;NM_199360:+;NM_199361:+;NM_199362:+;NM_199363:+;RightGenes=NM_003288:+;NM_199359:+;NM_199360:+;NM_199361:+;NM_199362:+;NM_199363:+;XRef=;Frequency=0.10
chr20	CG	SV	61981503	61981906	21	+	.	ID=1918;Type=deletion;Left=chr20:61981503-61981906;Right=chr20:61982263-61982419
chr20	CG	SV	61982263	61982419	21	+	.	ID=1918;Type=deletion;Left=chr20:61981503-61981906;Right=chr20:61982263-61982419
chr20	CG	SV	62066659	62068352	148	.	.	ID=1917;Type=deletion;Left=chr20:62066659-62067152+;Right=chr20:62067936-62068352+;Distance=1277;DiscordantMatePairAlignments=148;LeftRepeat=Self chain;Tandem period 43;RightRepeat=Self chain;Tandem period 43;LeftGenes=NM_020713:-;RightGenes=NM_020713:-;XRef=;Frequency=0.65
chr20	CG	SV	62066659	62067152	148	+	.	ID=1917;Type=deletion;Left=chr20:62066659-62067152;Right=chr20:62067936-62068352
chr20	CG	SV	62067936	62068352	148	+	.	ID=1917;Type=deletion;Left=chr20:62066659-62067152;Right=chr20:62067936-62068352
chr21	CG	SV	10058041	10058815	16	.	.	ID=1906;Type=deletion;Left=chr21:10058041-10058420+;Right=chr21:10058608-10058815+;Distance=567;DiscordantMatePairAlignments=16;LeftRepeat=MER33:DNA:MER1_type;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_181704:-;NM_182481:-;NM_182482:-;NM_182484:-;RightGenes=NM_181704:-;NM_182481:-;NM_182482:-;NM_182484:-;XRef=;Frequency=0.88
chr21	CG	SV	10058041	10058420	16	+	.	ID=1906;Type=deletion;Left=chr21:10058041-10058420;Right=chr21:10058608-10058815
chr21	CG	SV	10058608	10058815	16	+	.	ID=1906;Type=deletion;Left=chr21:10058041-10058420;Right=chr21:10058608-10058815
chr21	CG	SV	17534203	17536128	38	.	.	ID=624;Type=deletion;Left=chr21:17534203-17534618+;Right=chr21:17535507-17536128+;Distance=1304;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=L1PA7:LINE:L1;Tandem period 27;LeftGenes=;RightGenes=;XRef=rs71781010 (chr21:17534203-17535507);Frequency=0.76
chr21	CG	SV	17534203	17534618	38	+	.	ID=624;Type=deletion;Left=chr21:17534203-17534618;Right=chr21:17535507-17536128
chr21	CG	SV	17535507	17536128	38	+	.	ID=624;Type=deletion;Left=chr21:17534203-17534618;Right=chr21:17535507-17536128
chr21	CG	SV	18248696	18251494	32	.	.	ID=623;Type=deletion;Left=chr21:18248696-18249059+;Right=chr21:18251205-18251494+;Distance=2509;DiscordantMatePairAlignments=32;LeftRepeat=MLT2B1:LTR:ERVL;RightRepeat=MLT2B1:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs71197480 (chr21:18248710-18251219);Frequency=0.24
chr21	CG	SV	18248696	18249059	32	+	.	ID=623;Type=deletion;Left=chr21:18248696-18249059;Right=chr21:18251205-18251494
chr21	CG	SV	18251205	18251494	32	+	.	ID=623;Type=deletion;Left=chr21:18248696-18249059;Right=chr21:18251205-18251494
chr21	CG	SV	26296029	26296570	167	.	.	ID=1623;Type=inversion;Left=chr21:26296029-26296547+;Right=chr21:26296050-26296570-;Distance=541;DiscordantMatePairAlignments=167;LeftRepeat=;RightRepeat=;LeftGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;RightGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;XRef=;Frequency=1.00
chr21	CG	SV	26296029	26296547	167	+	.	ID=1623;Type=inversion;Left=chr21:26296029-26296547;Right=chr21:26296050-26296570
chr21	CG	SV	26296050	26296570	167	+	.	ID=1623;Type=inversion;Left=chr21:26296029-26296547;Right=chr21:26296050-26296570
chr21	CG	SV	26295533	26297065	285	.	.	ID=30;Type=inversion;Left=chr21:26295533-26296029-;Right=chr21:26296571-26297065+;Distance=542;DiscordantMatePairAlignments=285;LeftRepeat=;RightRepeat=;LeftGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;RightGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;XRef=;Frequency=1.00
chr21	CG	SV	26295533	26296029	285	-	.	ID=30;Type=inversion;Left=chr21:26295533-26296029;Right=chr21:26296571-26297065
chr21	CG	SV	26296571	26297065	285	-	.	ID=30;Type=inversion;Left=chr21:26295533-26296029;Right=chr21:26296571-26297065
chr21	CG	SV	26942238	26944108	75	.	.	ID=29;Type=complex;Left=chr21:26942238-26942554-;Right=chr21:26943596-26944108+;Distance=1042;DiscordantMatePairAlignments=75;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	26942238	26942554	75	-	.	ID=29;Type=complex;Left=chr21:26942238-26942554;Right=chr21:26943596-26944108
chr21	CG	SV	26943596	26944108	75	-	.	ID=29;Type=complex;Left=chr21:26942238-26942554;Right=chr21:26943596-26944108
chr21	CG	SV	26942558	26943498	55	.	.	ID=1622;Type=complex;Left=chr21:26942558-26942950+;Right=chr21:26943160-26943498-;Distance=940;DiscordantMatePairAlignments=55;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	26942558	26942950	55	+	.	ID=1622;Type=complex;Left=chr21:26942558-26942950;Right=chr21:26943160-26943498
chr21	CG	SV	26943160	26943498	55	+	.	ID=1622;Type=complex;Left=chr21:26942558-26942950;Right=chr21:26943160-26943498
chr21	CG	SV	29185623	29186414	38	.	.	ID=618;Type=deletion;Left=chr21:29185623-29186213+;Right=chr21:29186172-29186414+;Distance=549;DiscordantMatePairAlignments=38;LeftRepeat=L1MC1:LINE:L1;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66547158 (chr21:29185404-29185953);Frequency=1.00
chr21	CG	SV	29185623	29186213	38	+	.	ID=618;Type=deletion;Left=chr21:29185623-29186213;Right=chr21:29186172-29186414
chr21	CG	SV	29186172	29186414	38	+	.	ID=618;Type=deletion;Left=chr21:29185623-29186213;Right=chr21:29186172-29186414
chr21	CG	SV	29474096	29474931	21	.	.	ID=617;Type=deletion;Left=chr21:29474096-29474514+;Right=chr21:29474450-29474931+;Distance=354;DiscordantMatePairAlignments=21;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71197491 (chr21:29474096-29474450);Frequency=1.00
chr21	CG	SV	29474096	29474514	21	+	.	ID=617;Type=deletion;Left=chr21:29474096-29474514;Right=chr21:29474450-29474931
chr21	CG	SV	29474450	29474931	21	+	.	ID=617;Type=deletion;Left=chr21:29474096-29474514;Right=chr21:29474450-29474931
chr21	CG	SV	38403436	38403945	19	.	.	ID=614;Type=deletion;Left=chr21:38403436-38403991+;Right=chr21:38403806-38403945+;Distance=370;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;Tandem period 370;RightRepeat=Self chain;Tandem period 370;LeftGenes=NM_005867:-;RightGenes=NM_005867:-;XRef=;Frequency=1.00
chr21	CG	SV	38403436	38403991	19	+	.	ID=614;Type=deletion;Left=chr21:38403436-38403991;Right=chr21:38403806-38403945
chr21	CG	SV	38403806	38403945	19	+	.	ID=614;Type=deletion;Left=chr21:38403436-38403991;Right=chr21:38403806-38403945
chr21	CG	SV	41833816	41834690	61	.	.	ID=611;Type=deletion;Left=chr21:41833816-41834261+;Right=chr21:41834266-41834690+;Distance=450;DiscordantMatePairAlignments=61;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr21	CG	SV	41833816	41834261	61	+	.	ID=611;Type=deletion;Left=chr21:41833816-41834261;Right=chr21:41834266-41834690
chr21	CG	SV	41834266	41834690	61	+	.	ID=611;Type=deletion;Left=chr21:41833816-41834261;Right=chr21:41834266-41834690
chr21	CG	SV	42099349	42100760	10	.	.	ID=610;Type=complex;Left=chr21:42099349-42099596+;Right=chr21:42100559-42100760+;Distance=1210;DiscordantMatePairAlignments=10;LeftRepeat=(CCA)n:Simple_repeat:Simple_repeat;Tandem CAC;Tandem period 15;RightRepeat=;LeftGenes=NM_001040424:-;NM_022115:-;RightGenes=NM_001040424:-;NM_022115:-;XRef=;Frequency=1.00
chr21	CG	SV	42099349	42099596	10	+	.	ID=610;Type=complex;Left=chr21:42099349-42099596;Right=chr21:42100559-42100760
chr21	CG	SV	42100559	42100760	10	+	.	ID=610;Type=complex;Left=chr21:42099349-42099596;Right=chr21:42100559-42100760
chr21	CG	SV	42099836	42100626	24	.	.	ID=609;Type=complex;Left=chr21:42099836-42100027+;Right=chr21:42100452-42100626+;Distance=616;DiscordantMatePairAlignments=24;LeftRepeat=(CCA)n:Simple_repeat:Simple_repeat;Tandem CAC;Tandem period 15;RightRepeat=(CCA)n:Simple_repeat:Simple_repeat;LeftGenes=NM_001040424:-;NM_022115:-;RightGenes=NM_001040424:-;NM_022115:-;XRef=;Frequency=1.00
chr21	CG	SV	42099836	42100027	24	+	.	ID=609;Type=complex;Left=chr21:42099836-42100027;Right=chr21:42100452-42100626
chr21	CG	SV	42100452	42100626	24	+	.	ID=609;Type=complex;Left=chr21:42099836-42100027;Right=chr21:42100452-42100626
chr21	CG	SV	42223191	42227084	292	.	.	ID=608;Type=deletion;Left=chr21:42223191-42223719+;Right=chr21:42226560-42227084+;Distance=3369;DiscordantMatePairAlignments=292;LeftRepeat=LTR36:LTR:ERV1;RightRepeat=;LeftGenes=NM_015500:-;RightGenes=NM_015500:-;XRef=rs72055785 (chr21:42223185-42226554);Frequency=0.41
chr21	CG	SV	42223191	42223719	292	+	.	ID=608;Type=deletion;Left=chr21:42223191-42223719;Right=chr21:42226560-42227084
chr21	CG	SV	42226560	42227084	292	+	.	ID=608;Type=deletion;Left=chr21:42223191-42223719;Right=chr21:42226560-42227084
chr21	CG	SV	43794796	43798278	344	.	.	ID=606;Type=deletion;Left=chr21:43794796-43795414+;Right=chr21:43797732-43798278+;Distance=2936;DiscordantMatePairAlignments=344;LeftRepeat=;RightRepeat=Tigger4(Zombi):DNA:MER2_type;LeftGenes=NM_007031:-;RightGenes=NM_007031:-;XRef=rs72438714 (chr21:43794796-43797732);Frequency=0.53
chr21	CG	SV	43794796	43795414	344	+	.	ID=606;Type=deletion;Left=chr21:43794796-43795414;Right=chr21:43797732-43798278
chr21	CG	SV	43797732	43798278	344	+	.	ID=606;Type=deletion;Left=chr21:43794796-43795414;Right=chr21:43797732-43798278
chr21	CG	SV	44443627	44445462	71	.	.	ID=605;Type=deletion;Left=chr21:44443627-44444121+;Right=chr21:44445149-44445462+;Distance=1522;DiscordantMatePairAlignments=71;LeftRepeat=AluSq:SINE:Alu;RightRepeat=MER65B-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr21	CG	SV	44443627	44444121	71	+	.	ID=605;Type=deletion;Left=chr21:44443627-44444121;Right=chr21:44445149-44445462
chr21	CG	SV	44445149	44445462	71	+	.	ID=605;Type=deletion;Left=chr21:44443627-44444121;Right=chr21:44445149-44445462
chr21	CG	SV	45299297	45299463	246	.	.	ID=883;Type=tandem-duplication;Left=chr21:45299297-45299385-;Right=chr21:45299352-45299463-;Distance=78;DiscordantMatePairAlignments=246;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	45299297	45299385	246	-	.	ID=883;Type=tandem-duplication;Left=chr21:45299297-45299385;Right=chr21:45299352-45299463
chr21	CG	SV	45299352	45299463	246	-	.	ID=883;Type=tandem-duplication;Left=chr21:45299297-45299385;Right=chr21:45299352-45299463
chr21	CG	SV	46212457	46214608	28	.	.	ID=603;Type=deletion;Left=chr21:46212457-46212909+;Right=chr21:46214160-46214608+;Distance=1703;DiscordantMatePairAlignments=28;LeftRepeat=L1MC4a:LINE:L1;Self chain;RightRepeat=MLT1B:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=rs72238485 (chr21:46212457-46214160);Frequency=0.94
chr21	CG	SV	46212457	46212909	28	+	.	ID=603;Type=deletion;Left=chr21:46212457-46212909;Right=chr21:46214160-46214608
chr21	CG	SV	46214160	46214608	28	+	.	ID=603;Type=deletion;Left=chr21:46212457-46212909;Right=chr21:46214160-46214608
chr22	CG	SV	16427373	16428076	20	.	.	ID=599;Type=deletion;Left=chr22:16427373-16427863+;Right=chr22:16427731-16428076+;Distance=358;DiscordantMatePairAlignments=20;LeftRepeat=(TTTA)n:Simple_repeat:Simple_repeat;Self chain;Tandem TTTA;Tandem TTTTA;RightRepeat=Self chain;LeftGenes=NM_031481:+;RightGenes=NM_031481:+;XRef=rs66962360 (chr22:16427360-16427718);Frequency=0.94
chr22	CG	SV	16427373	16427863	20	+	.	ID=599;Type=deletion;Left=chr22:16427373-16427863;Right=chr22:16427731-16428076
chr22	CG	SV	16427731	16428076	20	+	.	ID=599;Type=deletion;Left=chr22:16427373-16427863;Right=chr22:16427731-16428076
chr22	CG	SV	16437818	16440802	14	.	.	ID=598;Type=deletion;Left=chr22:16437818-16438114+;Right=chr22:16440525-16440802+;Distance=2707;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_031481:+;RightGenes=NM_031481:+;XRef=rs71187331 (chr22:16437770-16440477);Frequency=0.94
chr22	CG	SV	16437818	16438114	14	+	.	ID=598;Type=deletion;Left=chr22:16437818-16438114;Right=chr22:16440525-16440802
chr22	CG	SV	16440525	16440802	14	+	.	ID=598;Type=deletion;Left=chr22:16437818-16438114;Right=chr22:16440525-16440802
chr22	CG	SV	17951619	17953320	27	.	.	ID=596;Type=deletion;Left=chr22:17951619-17952119+;Right=chr22:17953102-17953320+;Distance=1483;DiscordantMatePairAlignments=27;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L1MA4A:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr22	CG	SV	17951619	17952119	27	+	.	ID=596;Type=deletion;Left=chr22:17951619-17952119;Right=chr22:17953102-17953320
chr22	CG	SV	17953102	17953320	27	+	.	ID=596;Type=deletion;Left=chr22:17951619-17952119;Right=chr22:17953102-17953320
chr22	CG	SV	21032952	21082531	27	.	.	ID=881;Type=tandem-duplication;Left=chr22:21032952-21033195-;Right=chr22:21082134-21082531-;Distance=49336;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr22	CG	SV	21032952	21033195	27	-	.	ID=881;Type=tandem-duplication;Left=chr22:21032952-21033195;Right=chr22:21082134-21082531
chr22	CG	SV	21082134	21082531	27	-	.	ID=881;Type=tandem-duplication;Left=chr22:21032952-21033195;Right=chr22:21082134-21082531
chr22	CG	SV	21808555	21809959	89	.	.	ID=595;Type=deletion;Left=chr22:21808555-21808926+;Right=chr22:21809686-21809959+;Distance=1131;DiscordantMatePairAlignments=89;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_014433:-;RightGenes=NM_014433:-;XRef=rs66466474 (chr22:21808353-21809484);Frequency=0.41
chr22	CG	SV	21808555	21808926	89	+	.	ID=595;Type=deletion;Left=chr22:21808555-21808926;Right=chr22:21809686-21809959
chr22	CG	SV	21809686	21809959	89	+	.	ID=595;Type=deletion;Left=chr22:21808555-21808926;Right=chr22:21809686-21809959
chr22	CG	SV	22525949	22529035	12	.	.	ID=594;Type=deletion;Left=chr22:22525949-22526434+;Right=chr22:22528520-22529035+;Distance=2571;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67891020 (chr22:22525949-22528520);Frequency=1.00
chr22	CG	SV	22525949	22526434	12	+	.	ID=594;Type=deletion;Left=chr22:22525949-22526434;Right=chr22:22528520-22529035
chr22	CG	SV	22528520	22529035	12	+	.	ID=594;Type=deletion;Left=chr22:22525949-22526434;Right=chr22:22528520-22529035
chr22	CG	SV	23780079	23783196	23	.	.	ID=593;Type=deletion;Left=chr22:23780079-23780517+;Right=chr22:23782684-23783196+;Distance=2605;DiscordantMatePairAlignments=23;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_001145206:+;RightGenes=NM_001145206:+;XRef=;Frequency=0.06
chr22	CG	SV	23780079	23780517	23	+	.	ID=593;Type=deletion;Left=chr22:23780079-23780517;Right=chr22:23782684-23783196
chr22	CG	SV	23782684	23783196	23	+	.	ID=593;Type=deletion;Left=chr22:23780079-23780517;Right=chr22:23782684-23783196
chr22	CG	SV	25498076	25500343	133	.	.	ID=592;Type=deletion;Left=chr22:25498076-25498622+;Right=chr22:25499802-25500343+;Distance=1726;DiscordantMatePairAlignments=133;LeftRepeat=(TTTTA)n:Simple_repeat:Simple_repeat;Self chain;Tandem TTTTA;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67812002 (chr22:25498076-25499802);Frequency=1.00
chr22	CG	SV	25498076	25498622	133	+	.	ID=592;Type=deletion;Left=chr22:25498076-25498622;Right=chr22:25499802-25500343
chr22	CG	SV	25499802	25500343	133	+	.	ID=592;Type=deletion;Left=chr22:25498076-25498622;Right=chr22:25499802-25500343
chr22	CG	SV	29375468	29376729	27	.	.	ID=589;Type=deletion;Left=chr22:29375468-29375822+;Right=chr22:29376235-29376729+;Distance=767;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr22	CG	SV	29375468	29375822	27	+	.	ID=589;Type=deletion;Left=chr22:29375468-29375822;Right=chr22:29376235-29376729
chr22	CG	SV	29376235	29376729	27	+	.	ID=589;Type=deletion;Left=chr22:29375468-29375822;Right=chr22:29376235-29376729
chr22	CG	SV	31625772	31626767	14	.	.	ID=587;Type=deletion;Left=chr22:31625772-31626253+;Right=chr22:31626090-31626767+;Distance=318;DiscordantMatePairAlignments=14;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MIR3:SINE:MIR;LeftGenes=NM_001135774:-;NM_003490:-;NM_133633:-;RightGenes=NM_001135774:-;NM_003490:-;NM_133633:-;XRef=rs67512537 (chr22:31625772-31626090);Frequency=1.00
chr22	CG	SV	31625772	31626253	14	+	.	ID=587;Type=deletion;Left=chr22:31625772-31626253;Right=chr22:31626090-31626767
chr22	CG	SV	31626090	31626767	14	+	.	ID=587;Type=deletion;Left=chr22:31625772-31626253;Right=chr22:31626090-31626767
chr22	CG	SV	33789001	33789883	30	.	.	ID=586;Type=deletion;Left=chr22:33789001-33789477+;Right=chr22:33789421-33789883+;Distance=420;DiscordantMatePairAlignments=30;LeftRepeat=MSTA:LTR:MaLR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66506111 (chr22:33789010-33789421);Frequency=0.41
chr22	CG	SV	33789001	33789477	30	+	.	ID=586;Type=deletion;Left=chr22:33789001-33789477;Right=chr22:33789421-33789883
chr22	CG	SV	33789421	33789883	30	+	.	ID=586;Type=deletion;Left=chr22:33789001-33789477;Right=chr22:33789421-33789883
chr22	CG	SV	35473122	35478174	16	.	.	ID=576;Type=deletion;Left=chr22:35473122-35473512+;Right=chr22:35477848-35478174+;Distance=4726;DiscordantMatePairAlignments=16;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71819381 (chr22:35473093-35477819);Frequency=1.00
chr22	CG	SV	35473122	35473512	16	+	.	ID=576;Type=deletion;Left=chr22:35473122-35473512;Right=chr22:35477848-35478174
chr22	CG	SV	35477848	35478174	16	+	.	ID=576;Type=deletion;Left=chr22:35473122-35473512;Right=chr22:35477848-35478174
chr22	CG	SV	39124206	39125348	11	.	.	ID=574;Type=deletion;Left=chr22:39124206-39124676+;Right=chr22:39125225-39125348+;Distance=1019;DiscordantMatePairAlignments=11;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_015705:+;RightGenes=NM_015705:+;XRef=;Frequency=0.47
chr22	CG	SV	39124206	39124676	11	+	.	ID=574;Type=deletion;Left=chr22:39124206-39124676;Right=chr22:39125225-39125348
chr22	CG	SV	39125225	39125348	11	+	.	ID=574;Type=deletion;Left=chr22:39124206-39124676;Right=chr22:39125225-39125348
chr22	CG	SV	42006825	42007938	30	.	.	ID=571;Type=deletion;Left=chr22:42006825-42007126+;Right=chr22:42007549-42007938+;Distance=724;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;Tandem period 121;Tandem period 47;RightRepeat=C-rich:Low_complexity:Low_complexity;Self chain;Tandem period 13;Tandem period 47;LeftGenes=NM_173050:-;RightGenes=NM_173050:-;XRef=;Frequency=0.59
chr22	CG	SV	42006825	42007126	30	+	.	ID=571;Type=deletion;Left=chr22:42006825-42007126;Right=chr22:42007549-42007938
chr22	CG	SV	42007549	42007938	30	+	.	ID=571;Type=deletion;Left=chr22:42006825-42007126;Right=chr22:42007549-42007938
chr22	CG	SV	43631102	43632037	59	.	.	ID=570;Type=deletion;Left=chr22:43631102-43631635+;Right=chr22:43631768-43632037+;Distance=666;DiscordantMatePairAlignments=59;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSp:SINE:Alu;LeftGenes=NM_001017526:+;NM_181334:+;NM_181335:+;RightGenes=NM_001017526:+;NM_181334:+;NM_181335:+;XRef=rs72110256 (chr22:43631077-43631743);Frequency=0.29
chr22	CG	SV	43631102	43631635	59	+	.	ID=570;Type=deletion;Left=chr22:43631102-43631635;Right=chr22:43631768-43632037
chr22	CG	SV	43631768	43632037	59	+	.	ID=570;Type=deletion;Left=chr22:43631102-43631635;Right=chr22:43631768-43632037
chr22	CG	SV	46075133	46075984	55	.	.	ID=567;Type=deletion;Left=chr22:46075133-46075718+;Right=chr22:46075529-46075984+;Distance=396;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67878846 (chr22:46075127-46075523);Frequency=0.53
chr22	CG	SV	46075133	46075718	55	+	.	ID=567;Type=deletion;Left=chr22:46075133-46075718;Right=chr22:46075529-46075984
chr22	CG	SV	46075529	46075984	55	+	.	ID=567;Type=deletion;Left=chr22:46075133-46075718;Right=chr22:46075529-46075984
chr22	CG	SV	47023887	47024680	18	.	.	ID=566;Type=deletion;Left=chr22:47023887-47024294+;Right=chr22:47024205-47024680+;Distance=318;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67189063 (chr22:47023887-47024205);Frequency=0.82
chr22	CG	SV	47023887	47024294	18	+	.	ID=566;Type=deletion;Left=chr22:47023887-47024294;Right=chr22:47024205-47024680
chr22	CG	SV	47024205	47024680	18	+	.	ID=566;Type=deletion;Left=chr22:47023887-47024294;Right=chr22:47024205-47024680
chr22	CG	SV	47450103	47451338	11	.	.	ID=565;Type=deletion;Left=chr22:47450103-47450448+;Right=chr22:47451011-47451338+;Distance=908;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 41;RightRepeat=Self chain;Tandem period 41;LeftGenes=NM_001082967:+;NM_015381:+;RightGenes=NM_001082967:+;NM_015381:+;XRef=rs71194978 (chr22:47450008-47450787);Frequency=0.35
chr22	CG	SV	47450103	47450448	11	+	.	ID=565;Type=deletion;Left=chr22:47450103-47450448;Right=chr22:47451011-47451338
chr22	CG	SV	47451011	47451338	11	+	.	ID=565;Type=deletion;Left=chr22:47450103-47450448;Right=chr22:47451011-47451338
chrX	CG	SV	663694	666684	14	.	.	ID=564;Type=deletion;Left=chrX:663694-663941+;Right=chrX:666406-666684+;Distance=2712;DiscordantMatePairAlignments=14;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chrX	CG	SV	663694	663941	14	+	.	ID=564;Type=deletion;Left=chrX:663694-663941;Right=chrX:666406-666684
chrX	CG	SV	666406	666684	14	+	.	ID=564;Type=deletion;Left=chrX:663694-663941;Right=chrX:666406-666684
chrX	CG	SV	1158347	1158865	26	.	.	ID=876;Type=tandem-duplication;Left=chrX:1158347-1158621-;Right=chrX:1158664-1158865-;Distance=244;DiscordantMatePairAlignments=26;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chrX	CG	SV	1158347	1158621	26	-	.	ID=876;Type=tandem-duplication;Left=chrX:1158347-1158621;Right=chrX:1158664-1158865
chrX	CG	SV	1158664	1158865	26	-	.	ID=876;Type=tandem-duplication;Left=chrX:1158347-1158621;Right=chrX:1158664-1158865
chrX	CG	SV	1176109	1176735	32	.	.	ID=561;Type=deletion;Left=chrX:1176109-1176614+;Right=chrX:1176523-1176735+;Distance=414;DiscordantMatePairAlignments=32;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem period 138;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chrX	CG	SV	1176109	1176614	32	+	.	ID=561;Type=deletion;Left=chrX:1176109-1176614;Right=chrX:1176523-1176735
chrX	CG	SV	1176523	1176735	32	+	.	ID=561;Type=deletion;Left=chrX:1176109-1176614;Right=chrX:1176523-1176735
chrX	CG	SV	1682585	1683373	19	.	.	ID=557;Type=deletion;Left=chrX:1682585-1683124+;Right=chrX:1682960-1683373+;Distance=375;DiscordantMatePairAlignments=19;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=NM_004043:+;RightGenes=NM_004043:+;XRef=rs67460587 (chrX:1682521-1682895);Frequency=0.47
chrX	CG	SV	1682585	1683124	19	+	.	ID=557;Type=deletion;Left=chrX:1682585-1683124;Right=chrX:1682960-1683373
chrX	CG	SV	1682960	1683373	19	+	.	ID=557;Type=deletion;Left=chrX:1682585-1683124;Right=chrX:1682960-1683373
chrX	CG	SV	1871122	1872172	120	.	.	ID=554;Type=deletion;Left=chrX:1871122-1871415+;Right=chrX:1871721-1872172+;Distance=599;DiscordantMatePairAlignments=120;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs72117520 (chrX:1870931-1871530);Frequency=0.41
chrX	CG	SV	1871122	1871415	120	+	.	ID=554;Type=deletion;Left=chrX:1871122-1871415;Right=chrX:1871721-1872172
chrX	CG	SV	1871721	1872172	120	+	.	ID=554;Type=deletion;Left=chrX:1871122-1871415;Right=chrX:1871721-1872172
chrX	CG	SV	2302780	2305253	36	.	.	ID=553;Type=deletion;Left=chrX:2302780-2303429+;Right=chrX:2305037-2305253+;Distance=2257;DiscordantMatePairAlignments=36;LeftRepeat=AluSp:SINE:Alu;SegDup;Self chain;RightRepeat=AluSc:SINE:Alu;SegDup;Self chain;LeftGenes=NM_145177:-;RightGenes=NM_145177:-;XRef=;Frequency=0.18
chrX	CG	SV	2302780	2303429	36	+	.	ID=553;Type=deletion;Left=chrX:2302780-2303429;Right=chrX:2305037-2305253
chrX	CG	SV	2305037	2305253	36	+	.	ID=553;Type=deletion;Left=chrX:2302780-2303429;Right=chrX:2305037-2305253
chrX	CG	SV	5065347	5067924	34	.	.	ID=551;Type=deletion;Left=chrX:5065347-5065759+;Right=chrX:5067503-5067924+;Distance=2156;DiscordantMatePairAlignments=34;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67919263 (chrX:5065343-5067499);Frequency=0.94
chrX	CG	SV	5065347	5065759	34	+	.	ID=551;Type=deletion;Left=chrX:5065347-5065759;Right=chrX:5067503-5067924
chrX	CG	SV	5067503	5067924	34	+	.	ID=551;Type=deletion;Left=chrX:5065347-5065759;Right=chrX:5067503-5067924
chrX	CG	SV	5738553	5740796	50	.	.	ID=24;Type=distal-duplication;Left=chrX:5738553-5739124-;Right=chrX:5740611-5740796+;Distance=1487;DiscordantMatePairAlignments=50;LeftRepeat=Self chain;RightRepeat=Self chain;THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	5738553	5739124	50	-	.	ID=24;Type=distal-duplication;Left=chrX:5738553-5739124;Right=chrX:5740611-5740796
chrX	CG	SV	5740611	5740796	50	-	.	ID=24;Type=distal-duplication;Left=chrX:5738553-5739124;Right=chrX:5740611-5740796
chrX	CG	SV	5739126	5740791	25	.	.	ID=1565;Type=distal-duplication;Left=chrX:5739126-5739589+;Right=chrX:5740657-5740791-;Distance=1665;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	5739126	5739589	25	+	.	ID=1565;Type=distal-duplication;Left=chrX:5739126-5739589;Right=chrX:5740657-5740791
chrX	CG	SV	5740657	5740791	25	+	.	ID=1565;Type=distal-duplication;Left=chrX:5739126-5739589;Right=chrX:5740657-5740791
chrX	CG	SV	7077182	7101139	62	.	.	ID=549;Type=deletion;Left=chrX:7077182-7077584+;Right=chrX:7100680-7101139+;Distance=23498;DiscordantMatePairAlignments=62;LeftRepeat=BC200:scRNA:scRNA;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	7077182	7077584	62	+	.	ID=549;Type=deletion;Left=chrX:7077182-7077584;Right=chrX:7100680-7101139
chrX	CG	SV	7100680	7101139	62	+	.	ID=549;Type=deletion;Left=chrX:7077182-7077584;Right=chrX:7100680-7101139
chrX	CG	SV	11863120	11869802	86	.	.	ID=547;Type=deletion;Left=chrX:11863120-11863548+;Right=chrX:11869370-11869802+;Distance=6250;DiscordantMatePairAlignments=86;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67857742 (chrX:11863120-11869370);Frequency=0.47
chrX	CG	SV	11863120	11863548	86	+	.	ID=547;Type=deletion;Left=chrX:11863120-11863548;Right=chrX:11869370-11869802
chrX	CG	SV	11869370	11869802	86	+	.	ID=547;Type=deletion;Left=chrX:11863120-11863548;Right=chrX:11869370-11869802
chrX	CG	SV	16337606	16338294	33	.	.	ID=546;Type=deletion;Left=chrX:16337606-16338158+;Right=chrX:16338139-16338294+;Distance=533;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	16337606	16338158	33	+	.	ID=546;Type=deletion;Left=chrX:16337606-16338158;Right=chrX:16338139-16338294
chrX	CG	SV	16338139	16338294	33	+	.	ID=546;Type=deletion;Left=chrX:16337606-16338158;Right=chrX:16338139-16338294
chrX	CG	SV	17430551	17431317	18	.	.	ID=545;Type=deletion;Left=chrX:17430551-17431034+;Right=chrX:17430866-17431317+;Distance=315;DiscordantMatePairAlignments=18;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_198270:+;RightGenes=NM_198270:+;XRef=rs66968754 (chrX:17430537-17430852);Frequency=0.88
chrX	CG	SV	17430551	17431034	18	+	.	ID=545;Type=deletion;Left=chrX:17430551-17431034;Right=chrX:17430866-17431317
chrX	CG	SV	17430866	17431317	18	+	.	ID=545;Type=deletion;Left=chrX:17430551-17431034;Right=chrX:17430866-17431317
chrX	CG	SV	40390131	40390770	19	.	.	ID=542;Type=deletion;Left=chrX:40390131-40390682+;Right=chrX:40390455-40390770+;Distance=324;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_144970:-;RightGenes=NM_144970:-;XRef=;Frequency=1.00
chrX	CG	SV	40390131	40390682	19	+	.	ID=542;Type=deletion;Left=chrX:40390131-40390682;Right=chrX:40390455-40390770
chrX	CG	SV	40390455	40390770	19	+	.	ID=542;Type=deletion;Left=chrX:40390131-40390682;Right=chrX:40390455-40390770
chrX	CG	SV	52903112	55695675	21	.	.	ID=869;Type=distal-duplication;Left=chrX:52903112-52903445-;Right=chrX:55695192-55695675-;Distance=2792230;DiscordantMatePairAlignments=21;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	52903112	52903445	21	-	.	ID=869;Type=distal-duplication;Left=chrX:52903112-52903445;Right=chrX:55695192-55695675
chrX	CG	SV	55695192	55695675	21	-	.	ID=869;Type=distal-duplication;Left=chrX:52903112-52903445;Right=chrX:55695192-55695675
chrX	CG	SV	52908845	55695955	10	.	.	ID=537;Type=distal-duplication;Left=chrX:52908845-52909221+;Right=chrX:55695836-55695955+;Distance=2786991;DiscordantMatePairAlignments=10;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_130776:-;NM_133179:-;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	52908845	52909221	10	+	.	ID=537;Type=distal-duplication;Left=chrX:52908845-52909221;Right=chrX:55695836-55695955
chrX	CG	SV	55695836	55695955	10	+	.	ID=537;Type=distal-duplication;Left=chrX:52908845-52909221;Right=chrX:55695836-55695955
chrX	CG	SV	55189470	55202388	75	.	.	ID=536;Type=deletion;Left=chrX:55189470-55189883+;Right=chrX:55202293-55202388+;Distance=12823;DiscordantMatePairAlignments=75;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001166699:-;NM_001166700:-;NM_001166701:-;NM_001166702:-;NM_001166703:-;NM_001166704:-;NM_138362:-;NR_030722:-;RightGenes=NM_001166699:-;NM_001166700:-;NM_001166701:-;NM_001166702:-;NM_001166703:-;NM_001166704:-;NM_138362:-;NR_030722:-;XRef=;Frequency=1.00
chrX	CG	SV	55189470	55189883	75	+	.	ID=536;Type=deletion;Left=chrX:55189470-55189883;Right=chrX:55202293-55202388
chrX	CG	SV	55202293	55202388	75	+	.	ID=536;Type=deletion;Left=chrX:55189470-55189883;Right=chrX:55202293-55202388
chrX	CG	SV	69363395	69363478	10	.	.	ID=1562;Type=probable-inversion;Left=chrX:69363395-69363611+;Right=chrX:69363390-69363478-;Distance=83;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chrX	CG	SV	69363395	69363611	10	+	.	ID=1562;Type=probable-inversion;Left=chrX:69363395-69363611;Right=chrX:69363390-69363478
chrX	CG	SV	69363390	69363478	10	+	.	ID=1562;Type=probable-inversion;Left=chrX:69363395-69363611;Right=chrX:69363390-69363478
chrX	CG	SV	77008281	77011088	15	.	.	ID=534;Type=deletion;Left=chrX:77008281-77008692+;Right=chrX:77010767-77011088+;Distance=2486;DiscordantMatePairAlignments=15;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=NM_032121:-;RightGenes=NM_032121:-;XRef=rs72063817 (chrX:77008123-77010604);Frequency=0.94
chrX	CG	SV	77008281	77008692	15	+	.	ID=534;Type=deletion;Left=chrX:77008281-77008692;Right=chrX:77010767-77011088
chrX	CG	SV	77010767	77011088	15	+	.	ID=534;Type=deletion;Left=chrX:77008281-77008692;Right=chrX:77010767-77011088
chrX	CG	SV	77583513	77584571	143	.	.	ID=533;Type=deletion;Left=chrX:77583513-77584039+;Right=chrX:77584111-77584571+;Distance=598;DiscordantMatePairAlignments=143;LeftRepeat=Self chain;RightRepeat=HUERS-P1:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	77583513	77584039	143	+	.	ID=533;Type=deletion;Left=chrX:77583513-77584039;Right=chrX:77584111-77584571
chrX	CG	SV	77584111	77584571	143	+	.	ID=533;Type=deletion;Left=chrX:77583513-77584039;Right=chrX:77584111-77584571
chrX	CG	SV	78808545	78813011	14	.	.	ID=532;Type=complex;Left=chrX:78808545-78808726+;Right=chrX:78812727-78813011+;Distance=4182;DiscordantMatePairAlignments=14;LeftRepeat=L1PA16:LINE:L1;Self chain;RightRepeat=L1MA1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chrX	CG	SV	78808545	78808726	14	+	.	ID=532;Type=complex;Left=chrX:78808545-78808726;Right=chrX:78812727-78813011
chrX	CG	SV	78812727	78813011	14	+	.	ID=532;Type=complex;Left=chrX:78808545-78808726;Right=chrX:78812727-78813011
chrX	CG	SV	78809767	78813261	11	.	.	ID=9;Type=complex;Left=chrX:78809767-78809881-;Right=chrX:78812735-78813261+;Distance=2854;DiscordantMatePairAlignments=11;LeftRepeat=L1PA16:LINE:L1;Self chain;RightRepeat=L1MA1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chrX	CG	SV	78809767	78809881	11	-	.	ID=9;Type=complex;Left=chrX:78809767-78809881;Right=chrX:78812735-78813261
chrX	CG	SV	78812735	78813261	11	-	.	ID=9;Type=complex;Left=chrX:78809767-78809881;Right=chrX:78812735-78813261
chrX	CG	SV	78833104	78835811	20	.	.	ID=531;Type=deletion;Left=chrX:78833104-78833539+;Right=chrX:78835492-78835811+;Distance=2388;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=L1PA7:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs67757067 (chrX:78833104-78835491);Frequency=0.41
chrX	CG	SV	78833104	78833539	20	+	.	ID=531;Type=deletion;Left=chrX:78833104-78833539;Right=chrX:78835492-78835811
chrX	CG	SV	78835492	78835811	20	+	.	ID=531;Type=deletion;Left=chrX:78833104-78833539;Right=chrX:78835492-78835811
chrX	CG	SV	80929159	80930151	19	.	.	ID=530;Type=deletion;Left=chrX:80929159-80929426+;Right=chrX:80929739-80930151+;Distance=580;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;THE1B-int:LTR:MaLR;RightRepeat=Self chain;THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	80929159	80929426	19	+	.	ID=530;Type=deletion;Left=chrX:80929159-80929426;Right=chrX:80929739-80930151
chrX	CG	SV	80929739	80930151	19	+	.	ID=530;Type=deletion;Left=chrX:80929159-80929426;Right=chrX:80929739-80930151
chrX	CG	SV	80983306	80989776	42	.	.	ID=529;Type=deletion;Left=chrX:80983306-80983790+;Right=chrX:80989357-80989776+;Distance=6051;DiscordantMatePairAlignments=42;LeftRepeat=L1MC3:LINE:L1;Self chain;RightRepeat=L1MC3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	80983306	80983790	42	+	.	ID=529;Type=deletion;Left=chrX:80983306-80983790;Right=chrX:80989357-80989776
chrX	CG	SV	80989357	80989776	42	+	.	ID=529;Type=deletion;Left=chrX:80983306-80983790;Right=chrX:80989357-80989776
chrX	CG	SV	85491831	85497030	13	.	.	ID=527;Type=deletion;Left=chrX:85491831-85492284+;Right=chrX:85496523-85497030+;Distance=4692;DiscordantMatePairAlignments=13;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=(CAAAA)n:Simple_repeat:Simple_repeat;Self chain;Tandem AATAA;LeftGenes=NM_001139514:+;NM_001139515:+;NM_053281:+;RightGenes=NM_001139514:+;NM_001139515:+;NM_053281:+;XRef=rs67983647 (chrX:85491839-85496531);Frequency=0.88
chrX	CG	SV	85491831	85492284	13	+	.	ID=527;Type=deletion;Left=chrX:85491831-85492284;Right=chrX:85496523-85497030
chrX	CG	SV	85496523	85497030	13	+	.	ID=527;Type=deletion;Left=chrX:85491831-85492284;Right=chrX:85496523-85497030
chrX	CG	SV	86173430	86174252	15	.	.	ID=525;Type=deletion;Left=chrX:86173430-86173840+;Right=chrX:86173883-86174252+;Distance=453;DiscordantMatePairAlignments=15;LeftRepeat=L1PA15:LINE:L1;Self chain;RightRepeat=L1PA15:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71894066 (chrX:86173430-86173880);Frequency=0.71
chrX	CG	SV	86173430	86173840	15	+	.	ID=525;Type=deletion;Left=chrX:86173430-86173840;Right=chrX:86173883-86174252
chrX	CG	SV	86173883	86174252	15	+	.	ID=525;Type=deletion;Left=chrX:86173430-86173840;Right=chrX:86173883-86174252
chrX	CG	SV	89465022	89467565	55	.	.	ID=524;Type=deletion;Left=chrX:89465022-89465432+;Right=chrX:89467036-89467565+;Distance=2014;DiscordantMatePairAlignments=55;LeftRepeat=MLT-int:LTR:MaLR;SegDup;Self chain;RightRepeat=L1MB3:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chrX	CG	SV	89465022	89465432	55	+	.	ID=524;Type=deletion;Left=chrX:89465022-89465432;Right=chrX:89467036-89467565
chrX	CG	SV	89467036	89467565	55	+	.	ID=524;Type=deletion;Left=chrX:89465022-89465432;Right=chrX:89467036-89467565
chrX	CG	SV	90170015	90171193	213	.	.	ID=523;Type=deletion;Left=chrX:90170015-90170564+;Right=chrX:90170744-90171193+;Distance=729;DiscordantMatePairAlignments=213;LeftRepeat=LTR9B:LTR:ERV1;SegDup;Self chain;RightRepeat=L1MA9:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chrX	CG	SV	90170015	90170564	213	+	.	ID=523;Type=deletion;Left=chrX:90170015-90170564;Right=chrX:90170744-90171193
chrX	CG	SV	90170744	90171193	213	+	.	ID=523;Type=deletion;Left=chrX:90170015-90170564;Right=chrX:90170744-90171193
chrX	CG	SV	93233376	93236814	79	.	.	ID=522;Type=deletion;Left=chrX:93233376-93233825+;Right=chrX:93236393-93236814+;Distance=3017;DiscordantMatePairAlignments=79;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	93233376	93233825	79	+	.	ID=522;Type=deletion;Left=chrX:93233376-93233825;Right=chrX:93236393-93236814
chrX	CG	SV	93236393	93236814	79	+	.	ID=522;Type=deletion;Left=chrX:93233376-93233825;Right=chrX:93236393-93236814
chrX	CG	SV	94937503	94938485	38	.	.	ID=521;Type=deletion;Left=chrX:94937503-94937774+;Right=chrX:94938136-94938485+;Distance=633;DiscordantMatePairAlignments=38;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs72179039 (chrX:94937503-94938136);Frequency=0.88
chrX	CG	SV	94937503	94937774	38	+	.	ID=521;Type=deletion;Left=chrX:94937503-94937774;Right=chrX:94938136-94938485
chrX	CG	SV	94938136	94938485	38	+	.	ID=521;Type=deletion;Left=chrX:94937503-94937774;Right=chrX:94938136-94938485
chrX	CG	SV	112995052	113013084	34	.	.	ID=8;Type=probable-inversion;Left=chrX:112995052-112995499-;Right=chrX:113012571-113013084+;Distance=17072;DiscordantMatePairAlignments=34;LeftRepeat=L1ME1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	112995052	112995499	34	-	.	ID=8;Type=probable-inversion;Left=chrX:112995052-112995499;Right=chrX:113012571-113013084
chrX	CG	SV	113012571	113013084	34	-	.	ID=8;Type=probable-inversion;Left=chrX:112995052-112995499;Right=chrX:113012571-113013084
chrX	CG	SV	114448780	114450897	11	.	.	ID=517;Type=deletion;Left=chrX:114448780-114449208+;Right=chrX:114450769-114450897+;Distance=1989;DiscordantMatePairAlignments=11;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L1MB2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chrX	CG	SV	114448780	114449208	11	+	.	ID=517;Type=deletion;Left=chrX:114448780-114449208;Right=chrX:114450769-114450897
chrX	CG	SV	114450769	114450897	11	+	.	ID=517;Type=deletion;Left=chrX:114448780-114449208;Right=chrX:114450769-114450897
chrX	CG	SV	117718981	117720467	12	.	.	ID=514;Type=deletion;Left=chrX:117718981-117719479+;Right=chrX:117720311-117720467+;Distance=1330;DiscordantMatePairAlignments=12;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	117718981	117719479	12	+	.	ID=514;Type=deletion;Left=chrX:117718981-117719479;Right=chrX:117720311-117720467
chrX	CG	SV	117720311	117720467	12	+	.	ID=514;Type=deletion;Left=chrX:117718981-117719479;Right=chrX:117720311-117720467
chrX	CG	SV	117905950	117908402	40	.	.	ID=513;Type=deletion;Left=chrX:117905950-117906929+;Right=chrX:117907853-117908402+;Distance=1903;DiscordantMatePairAlignments=40;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	117905950	117906929	40	+	.	ID=513;Type=deletion;Left=chrX:117905950-117906929;Right=chrX:117907853-117908402
chrX	CG	SV	117907853	117908402	40	+	.	ID=513;Type=deletion;Left=chrX:117905950-117906929;Right=chrX:117907853-117908402
chrX	CG	SV	130833149	130836402	49	.	.	ID=509;Type=deletion;Left=chrX:130833149-130833597+;Right=chrX:130836311-130836402+;Distance=3162;DiscordantMatePairAlignments=49;LeftRepeat=AluSp:SINE:Alu;Self chain;RightRepeat=MER70-int:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chrX	CG	SV	130833149	130833597	49	+	.	ID=509;Type=deletion;Left=chrX:130833149-130833597;Right=chrX:130836311-130836402
chrX	CG	SV	130836311	130836402	49	+	.	ID=509;Type=deletion;Left=chrX:130833149-130833597;Right=chrX:130836311-130836402
chrX	CG	SV	131221256	131221959	29	.	.	ID=1559;Type=distal-duplication;Left=chrX:131221256-131221794+;Right=chrX:131221876-131221959-;Distance=703;DiscordantMatePairAlignments=29;LeftRepeat=MLT1B:LTR:MaLR;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	131221256	131221794	29	+	.	ID=1559;Type=distal-duplication;Left=chrX:131221256-131221794;Right=chrX:131221876-131221959
chrX	CG	SV	131221876	131221959	29	+	.	ID=1559;Type=distal-duplication;Left=chrX:131221256-131221794;Right=chrX:131221876-131221959
chrX	CG	SV	131220900	131221968	28	.	.	ID=7;Type=distal-duplication;Left=chrX:131220900-131221272-;Right=chrX:131221878-131221968+;Distance=606;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chrX	CG	SV	131220900	131221272	28	-	.	ID=7;Type=distal-duplication;Left=chrX:131220900-131221272;Right=chrX:131221878-131221968
chrX	CG	SV	131221878	131221968	28	-	.	ID=7;Type=distal-duplication;Left=chrX:131220900-131221272;Right=chrX:131221878-131221968
chrX	CG	SV	134985665	134986582	19	.	.	ID=507;Type=deletion;Left=chrX:134985665-134986161+;Right=chrX:134985996-134986582+;Distance=331;DiscordantMatePairAlignments=19;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs67779071 (chrX:134985665-134985996);Frequency=1.00
chrX	CG	SV	134985665	134986161	19	+	.	ID=507;Type=deletion;Left=chrX:134985665-134986161;Right=chrX:134985996-134986582
chrX	CG	SV	134985996	134986582	19	+	.	ID=507;Type=deletion;Left=chrX:134985665-134986161;Right=chrX:134985996-134986582
chrX	CG	SV	138212577	138213429	16	.	.	ID=506;Type=deletion;Left=chrX:138212577-138213067+;Right=chrX:138212903-138213429+;Distance=326;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68004977 (chrX:138212560-138212886);Frequency=0.94
chrX	CG	SV	138212577	138213067	16	+	.	ID=506;Type=deletion;Left=chrX:138212577-138213067;Right=chrX:138212903-138213429
chrX	CG	SV	138212903	138213429	16	+	.	ID=506;Type=deletion;Left=chrX:138212577-138213067;Right=chrX:138212903-138213429
chrX	CG	SV	138984951	139048575	18	.	.	ID=865;Type=tandem-duplication;Left=chrX:138984951-138985361-;Right=chrX:139048482-139048575-;Distance=63214;DiscordantMatePairAlignments=18;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	138984951	138985361	18	-	.	ID=865;Type=tandem-duplication;Left=chrX:138984951-138985361;Right=chrX:139048482-139048575
chrX	CG	SV	139048482	139048575	18	-	.	ID=865;Type=tandem-duplication;Left=chrX:138984951-138985361;Right=chrX:139048482-139048575
chrX	CG	SV	144229769	144232698	71	.	.	ID=505;Type=deletion;Left=chrX:144229769-144230304+;Right=chrX:144232200-144232698+;Distance=2431;DiscordantMatePairAlignments=71;LeftRepeat=L1M1:LINE:L1;RightRepeat=MSTA:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	144229769	144230304	71	+	.	ID=505;Type=deletion;Left=chrX:144229769-144230304;Right=chrX:144232200-144232698
chrX	CG	SV	144232200	144232698	71	+	.	ID=505;Type=deletion;Left=chrX:144229769-144230304;Right=chrX:144232200-144232698
chrX	CG	SV	147317388	147319216	183	.	.	ID=503;Type=deletion;Left=chrX:147317388-147317945+;Right=chrX:147318927-147319216+;Distance=1539;DiscordantMatePairAlignments=183;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs68151473 (chrX:147317390-147318927);Frequency=0.82
chrX	CG	SV	147317388	147317945	183	+	.	ID=503;Type=deletion;Left=chrX:147317388-147317945;Right=chrX:147318927-147319216
chrX	CG	SV	147318927	147319216	183	+	.	ID=503;Type=deletion;Left=chrX:147317388-147317945;Right=chrX:147318927-147319216
chrX	CG	SV	154571654	154575216	12	.	.	ID=501;Type=deletion;Left=chrX:154571654-154571933+;Right=chrX:154574919-154575216+;Distance=3265;DiscordantMatePairAlignments=12;LeftRepeat=L1PA10:LINE:L1;RightRepeat=L1MA4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	154571654	154571933	12	+	.	ID=501;Type=deletion;Left=chrX:154571654-154571933;Right=chrX:154574919-154575216
chrX	CG	SV	154574919	154575216	12	+	.	ID=501;Type=deletion;Left=chrX:154571654-154571933;Right=chrX:154574919-154575216
chrM	CG	SV	15915	16422	17	-	.	ID=306;Type=tandem-duplication;Left=chrM:-192-163;Right=chrM:15915-16422