chr1	CG	SV	815473	5649523	18	.	.	ID=3552;Type=complex;Left=chr1:815473-815629-;Right=chr1:5649115-5649523-;Distance=4833894;DiscordantMatePairAlignments=18;LeftRepeat=AluS:SINE:Alu;SegDup;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	815473	815629	18	-	.	ID=3552;Type=complex;Left=chr1:815473-815629;Right=chr1:5649115-5649523
chr1	CG	SV	5649115	5649523	18	-	.	ID=3552;Type=complex;Left=chr1:815473-815629;Right=chr1:5649115-5649523
chr1	CG	SV	816161	5650221	11	.	.	ID=3885;Type=complex;Left=chr1:816161-816609+;Right=chr1:5650073-5650221+;Distance=4833912;DiscordantMatePairAlignments=11;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	816161	816609	11	+	.	ID=3885;Type=complex;Left=chr1:816161-816609;Right=chr1:5650073-5650221
chr1	CG	SV	5650073	5650221	11	+	.	ID=3885;Type=complex;Left=chr1:816161-816609;Right=chr1:5650073-5650221
chr1	CG	SV	816173	5651049	11	.	.	ID=3884;Type=complex;Left=chr1:816173-816506+;Right=chr1:5650719-5651049+;Distance=4834546;DiscordantMatePairAlignments=11;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;Tandem period 100;Tandem period 34;Tandem period 66;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	816173	816506	11	+	.	ID=3884;Type=complex;Left=chr1:816173-816506;Right=chr1:5650719-5651049
chr1	CG	SV	5650719	5651049	11	+	.	ID=3884;Type=complex;Left=chr1:816173-816506;Right=chr1:5650719-5651049
chr1	CG	SV	859362	860512	29	.	.	ID=3888;Type=deletion;Left=chr1:859362-859721+;Right=chr1:860202-860512+;Distance=840;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;Tandem period 28;RightRepeat=Self chain;Tandem period 28;LeftGenes=NM_152486:+;RightGenes=NM_152486:+;XRef=rs70949527 (chr1:859334-860175);Frequency=1.00
chr1	CG	SV	859362	859721	29	+	.	ID=3888;Type=deletion;Left=chr1:859362-859721;Right=chr1:860202-860512
chr1	CG	SV	860202	860512	29	+	.	ID=3888;Type=deletion;Left=chr1:859362-859721;Right=chr1:860202-860512
chr1	CG	SV	953901	954677	54	.	.	ID=3887;Type=deletion;Left=chr1:953901-954509+;Right=chr1:954388-954677+;Distance=487;DiscordantMatePairAlignments=54;LeftRepeat=Self chain;Tandem period 61;RightRepeat=Self chain;LeftGenes=NM_198576:+;RightGenes=NM_198576:+;XRef=;Frequency=0.29
chr1	CG	SV	953901	954509	54	+	.	ID=3887;Type=deletion;Left=chr1:953901-954509;Right=chr1:954388-954677
chr1	CG	SV	954388	954677	54	+	.	ID=3887;Type=deletion;Left=chr1:953901-954509;Right=chr1:954388-954677
chr1	CG	SV	2908894	2909683	41	.	.	ID=3881;Type=deletion;Left=chr1:2908894-2909240+;Right=chr1:2909229-2909683+;Distance=335;DiscordantMatePairAlignments=41;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	2908894	2909240	41	+	.	ID=3881;Type=deletion;Left=chr1:2908894-2909240;Right=chr1:2909229-2909683
chr1	CG	SV	2909229	2909683	41	+	.	ID=3881;Type=deletion;Left=chr1:2908894-2909240;Right=chr1:2909229-2909683
chr1	CG	SV	5650463	5651240	126	.	.	ID=3878;Type=complex;Left=chr1:5650463-5650932+;Right=chr1:5650902-5651240+;Distance=439;DiscordantMatePairAlignments=126;LeftRepeat=Self chain;Tandem period 100;Tandem period 34;Tandem period 66;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	5650463	5650932	126	+	.	ID=3878;Type=complex;Left=chr1:5650463-5650932;Right=chr1:5650902-5651240
chr1	CG	SV	5650902	5651240	126	+	.	ID=3878;Type=complex;Left=chr1:5650463-5650932;Right=chr1:5650902-5651240
chr1	CG	SV	5943284	5948998	70	.	.	ID=3876;Type=deletion;Left=chr1:5943284-5943812+;Right=chr1:5948663-5948998+;Distance=5379;DiscordantMatePairAlignments=70;LeftRepeat=Self chain;RightRepeat=MER72:LTR:ERV1;Self chain;LeftGenes=NM_015102:-;RightGenes=NM_015102:-;XRef=;Frequency=0.00
chr1	CG	SV	5943284	5943812	70	+	.	ID=3876;Type=deletion;Left=chr1:5943284-5943812;Right=chr1:5948663-5948998
chr1	CG	SV	5948663	5948998	70	+	.	ID=3876;Type=deletion;Left=chr1:5943284-5943812;Right=chr1:5948663-5948998
chr1	CG	SV	9393615	9393958	16	.	.	ID=1291;Type=tandem-duplication;Left=chr1:9393615-9393754-;Right=chr1:9393849-9393958-;Distance=204;DiscordantMatePairAlignments=16;LeftRepeat=Tandem period 16;Tandem period 24;Tandem period 8;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	9393615	9393754	16	-	.	ID=1291;Type=tandem-duplication;Left=chr1:9393615-9393754;Right=chr1:9393849-9393958
chr1	CG	SV	9393849	9393958	16	-	.	ID=1291;Type=tandem-duplication;Left=chr1:9393615-9393754;Right=chr1:9393849-9393958
chr1	CG	SV	11605480	11606137	21	.	.	ID=3874;Type=deletion;Left=chr1:11605480-11605990+;Right=chr1:11605776-11606137+;Distance=296;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr1	CG	SV	11605480	11605990	21	+	.	ID=3874;Type=deletion;Left=chr1:11605480-11605990;Right=chr1:11605776-11606137
chr1	CG	SV	11605776	11606137	21	+	.	ID=3874;Type=deletion;Left=chr1:11605480-11605990;Right=chr1:11605776-11606137
chr1	CG	SV	15422316	25362958	60	.	.	ID=1060;Type=probable-inversion;Left=chr1:15422316-15422806-;Right=chr1:25362531-25362958+;Distance=9939725;DiscordantMatePairAlignments=60;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluJ/FLAM:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	15422316	15422806	60	-	.	ID=1060;Type=probable-inversion;Left=chr1:15422316-15422806;Right=chr1:25362531-25362958
chr1	CG	SV	25362531	25362958	60	-	.	ID=1060;Type=probable-inversion;Left=chr1:15422316-15422806;Right=chr1:25362531-25362958
chr1	CG	SV	15616806	25365520	51	.	.	ID=4061;Type=probable-inversion;Left=chr1:15616806-15617258+;Right=chr1:25365175-25365520-;Distance=9748714;DiscordantMatePairAlignments=51;LeftRepeat=Self chain;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_024329:+;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	15616806	15617258	51	+	.	ID=4061;Type=probable-inversion;Left=chr1:15616806-15617258;Right=chr1:25365175-25365520
chr1	CG	SV	25365175	25365520	51	+	.	ID=4061;Type=probable-inversion;Left=chr1:15616806-15617258;Right=chr1:25365175-25365520
chr1	CG	SV	16923892	232979283	224	.	.	ID=520;Type=probable-inversion;Left=chr1:16923892-16924326-;Right=chr1:232978810-232979283+;Distance=216054484;DiscordantMatePairAlignments=224;LeftRepeat=SegDup;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	16923892	16924326	224	-	.	ID=520;Type=probable-inversion;Left=chr1:16923892-16924326;Right=chr1:232978810-232979283
chr1	CG	SV	232978810	232979283	224	-	.	ID=520;Type=probable-inversion;Left=chr1:16923892-16924326;Right=chr1:232978810-232979283
chr1	CG	SV	25031287	25034370	27	.	.	ID=3872;Type=deletion;Left=chr1:25031287-25031622+;Right=chr1:25034109-25034370+;Distance=2822;DiscordantMatePairAlignments=27;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=NM_013943:+;RightGenes=NM_013943:+;XRef=rs67502578 (chr1:25031274-25034096);Frequency=1.00
chr1	CG	SV	25031287	25031622	27	+	.	ID=3872;Type=deletion;Left=chr1:25031287-25031622;Right=chr1:25034109-25034370
chr1	CG	SV	25034109	25034370	27	+	.	ID=3872;Type=deletion;Left=chr1:25031287-25031622;Right=chr1:25034109-25034370
chr1	CG	SV	26362410	26363223	14	.	.	ID=3871;Type=deletion;Left=chr1:26362410-26362593+;Right=chr1:26362736-26363223+;Distance=326;DiscordantMatePairAlignments=14;LeftRepeat=L2:LINE:L2;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs70959243 (chr1:26362410-26362736);Frequency=1.00
chr1	CG	SV	26362410	26362593	14	+	.	ID=3871;Type=deletion;Left=chr1:26362410-26362593;Right=chr1:26362736-26363223
chr1	CG	SV	26362736	26363223	14	+	.	ID=3871;Type=deletion;Left=chr1:26362410-26362593;Right=chr1:26362736-26363223
chr1	CG	SV	29593179	30651728	26	.	.	ID=1059;Type=probable-inversion;Left=chr1:29593179-29593426-;Right=chr1:30651405-30651728+;Distance=1057979;DiscordantMatePairAlignments=26;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	29593179	29593426	26	-	.	ID=1059;Type=probable-inversion;Left=chr1:29593179-29593426;Right=chr1:30651405-30651728
chr1	CG	SV	30651405	30651728	26	-	.	ID=1059;Type=probable-inversion;Left=chr1:29593179-29593426;Right=chr1:30651405-30651728
chr1	CG	SV	30341919	30342489	15	.	.	ID=1058;Type=probable-inversion;Left=chr1:30341919-30341991-;Right=chr1:30342060-30342489+;Distance=69;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr1	CG	SV	30341919	30341991	15	-	.	ID=1058;Type=probable-inversion;Left=chr1:30341919-30341991;Right=chr1:30342060-30342489
chr1	CG	SV	30342060	30342489	15	-	.	ID=1058;Type=probable-inversion;Left=chr1:30341919-30341991;Right=chr1:30342060-30342489
chr1	CG	SV	31172087	31173025	15	.	.	ID=3869;Type=deletion;Left=chr1:31172087-31172545+;Right=chr1:31172801-31173025+;Distance=714;DiscordantMatePairAlignments=15;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	31172087	31172545	15	+	.	ID=3869;Type=deletion;Left=chr1:31172087-31172545;Right=chr1:31172801-31173025
chr1	CG	SV	31172801	31173025	15	+	.	ID=3869;Type=deletion;Left=chr1:31172087-31172545;Right=chr1:31172801-31173025
chr1	CG	SV	32966028	32968724	25	.	.	ID=1288;Type=tandem-duplication;Left=chr1:32966028-32966455-;Right=chr1:32968319-32968724-;Distance=2269;DiscordantMatePairAlignments=25;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSp:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	32966028	32966455	25	-	.	ID=1288;Type=tandem-duplication;Left=chr1:32966028-32966455;Right=chr1:32968319-32968724
chr1	CG	SV	32968319	32968724	25	-	.	ID=1288;Type=tandem-duplication;Left=chr1:32966028-32966455;Right=chr1:32968319-32968724
chr1	CG	SV	33288662	33288920	34	-	.	ID=1238;Type=interchromosomal;Left=chr1:33288662-33288920-;Right=chr7:24414893-24415236-;Distance=;DiscordantMatePairAlignments=34;LeftRepeat=MLT1J:LTR:MaLR;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	24414893	24415236	34	-	.	ID=1238;Type=interchromosomal;Left=chr1:33288662-33288920-;Right=chr7:24414893-24415236-;Distance=;DiscordantMatePairAlignments=34;LeftRepeat=MLT1J:LTR:MaLR;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	35399852	35400451	14	.	.	ID=3866;Type=deletion;Left=chr1:35399852-35400336+;Right=chr1:35400173-35400451+;Distance=321;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	35399852	35400336	14	+	.	ID=3866;Type=deletion;Left=chr1:35399852-35400336;Right=chr1:35400173-35400451
chr1	CG	SV	35400173	35400451	14	+	.	ID=3866;Type=deletion;Left=chr1:35399852-35400336;Right=chr1:35400173-35400451
chr1	CG	SV	39742077	39742998	11	.	.	ID=1286;Type=tandem-duplication;Left=chr1:39742077-39742537-;Right=chr1:39742762-39742998-;Distance=461;DiscordantMatePairAlignments=11;LeftRepeat=LTR5B:LTR:ERVK;Self chain;RightRepeat=LTR5B:LTR:ERVK;Self chain;LeftGenes=NM_181809:+;RightGenes=NM_181809:+;XRef=;Frequency=0.65
chr1	CG	SV	39742077	39742537	11	-	.	ID=1286;Type=tandem-duplication;Left=chr1:39742077-39742537;Right=chr1:39742762-39742998
chr1	CG	SV	39742762	39742998	11	-	.	ID=1286;Type=tandem-duplication;Left=chr1:39742077-39742537;Right=chr1:39742762-39742998
chr1	CG	SV	43613227	43614076	17	.	.	ID=3863;Type=deletion;Left=chr1:43613227-43613511+;Right=chr1:43613833-43614076+;Distance=606;DiscordantMatePairAlignments=17;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs70959252 (chr1:43613210-43613816);Frequency=0.00
chr1	CG	SV	43613227	43613511	17	+	.	ID=3863;Type=deletion;Left=chr1:43613227-43613511;Right=chr1:43613833-43614076
chr1	CG	SV	43613833	43614076	17	+	.	ID=3863;Type=deletion;Left=chr1:43613227-43613511;Right=chr1:43613833-43614076
chr1	CG	SV	43831883	43832473	47	.	.	ID=4059;Type=probable-inversion;Left=chr1:43831883-43832377+;Right=chr1:43832112-43832473-;Distance=590;DiscordantMatePairAlignments=47;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_002840:+;NM_130440:+;RightGenes=NM_002840:+;NM_130440:+;XRef=;Frequency=0.94
chr1	CG	SV	43831883	43832377	47	+	.	ID=4059;Type=probable-inversion;Left=chr1:43831883-43832377;Right=chr1:43832112-43832473
chr1	CG	SV	43832112	43832473	47	+	.	ID=4059;Type=probable-inversion;Left=chr1:43831883-43832377;Right=chr1:43832112-43832473
chr1	CG	SV	56173881	56174644	17	.	.	ID=3859;Type=deletion;Left=chr1:56173881-56174190+;Right=chr1:56174202-56174644+;Distance=321;DiscordantMatePairAlignments=17;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10525686 (chr1:56173881-56174202);Frequency=1.00
chr1	CG	SV	56173881	56174190	17	+	.	ID=3859;Type=deletion;Left=chr1:56173881-56174190;Right=chr1:56174202-56174644
chr1	CG	SV	56174202	56174644	17	+	.	ID=3859;Type=deletion;Left=chr1:56173881-56174190;Right=chr1:56174202-56174644
chr1	CG	SV	56603712	56607934	139	.	.	ID=3858;Type=deletion;Left=chr1:56603712-56604193+;Right=chr1:56607567-56607934+;Distance=3855;DiscordantMatePairAlignments=139;LeftRepeat=L1HS:LINE:L1;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr1	CG	SV	56603712	56604193	139	+	.	ID=3858;Type=deletion;Left=chr1:56603712-56604193;Right=chr1:56607567-56607934
chr1	CG	SV	56607567	56607934	139	+	.	ID=3858;Type=deletion;Left=chr1:56603712-56604193;Right=chr1:56607567-56607934
chr1	CG	SV	56768279	56768934	101	.	.	ID=1284;Type=tandem-duplication;Left=chr1:56768279-56768620-;Right=chr1:56768609-56768934-;Distance=314;DiscordantMatePairAlignments=101;LeftRepeat=;RightRepeat=;LeftGenes=NM_003713:-;NM_177414:-;RightGenes=NM_003713:-;NM_177414:-;XRef=;Frequency=0.71
chr1	CG	SV	56768279	56768620	101	-	.	ID=1284;Type=tandem-duplication;Left=chr1:56768279-56768620;Right=chr1:56768609-56768934
chr1	CG	SV	56768609	56768934	101	-	.	ID=1284;Type=tandem-duplication;Left=chr1:56768279-56768620;Right=chr1:56768609-56768934
chr1	CG	SV	57015213	57015955	16	.	.	ID=3857;Type=deletion;Left=chr1:57015213-57015641+;Right=chr1:57015552-57015955+;Distance=339;DiscordantMatePairAlignments=16;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=MIRb:SINE:MIR;LeftGenes=NM_001004303:-;RightGenes=NM_001004303:-;XRef=rs67469653 (chr1:57015195-57015534);Frequency=1.00
chr1	CG	SV	57015213	57015641	16	+	.	ID=3857;Type=deletion;Left=chr1:57015213-57015641;Right=chr1:57015552-57015955
chr1	CG	SV	57015552	57015955	16	+	.	ID=3857;Type=deletion;Left=chr1:57015213-57015641;Right=chr1:57015552-57015955
chr1	CG	SV	58516501	58517802	135	.	.	ID=3854;Type=deletion;Left=chr1:58516501-58517025+;Right=chr1:58517414-58517802+;Distance=913;DiscordantMatePairAlignments=135;LeftRepeat=THE1D:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67647148 (chr1:58516501-58517414);Frequency=1.00
chr1	CG	SV	58516501	58517025	135	+	.	ID=3854;Type=deletion;Left=chr1:58516501-58517025;Right=chr1:58517414-58517802
chr1	CG	SV	58517414	58517802	135	+	.	ID=3854;Type=deletion;Left=chr1:58516501-58517025;Right=chr1:58517414-58517802
chr1	CG	SV	62163190	62163972	30	.	.	ID=3853;Type=deletion;Left=chr1:62163190-62163565+;Right=chr1:62163539-62163972+;Distance=349;DiscordantMatePairAlignments=30;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_176877:+;RightGenes=NM_176877:+;XRef=rs6143236 (chr1:62163174-62163523);Frequency=1.00
chr1	CG	SV	62163190	62163565	30	+	.	ID=3853;Type=deletion;Left=chr1:62163190-62163565;Right=chr1:62163539-62163972
chr1	CG	SV	62163539	62163972	30	+	.	ID=3853;Type=deletion;Left=chr1:62163190-62163565;Right=chr1:62163539-62163972
chr1	CG	SV	62924423	62925201	24	.	.	ID=3851;Type=deletion;Left=chr1:62924423-62924843+;Right=chr1:62924762-62925201+;Distance=339;DiscordantMatePairAlignments=24;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_033407:-;RightGenes=NM_033407:-;XRef=rs6143239 (chr1:62924423-62924762);Frequency=1.00
chr1	CG	SV	62924423	62924843	24	+	.	ID=3851;Type=deletion;Left=chr1:62924423-62924843;Right=chr1:62924762-62925201
chr1	CG	SV	62924762	62925201	24	+	.	ID=3851;Type=deletion;Left=chr1:62924423-62924843;Right=chr1:62924762-62925201
chr1	CG	SV	63477950	63481156	134	.	.	ID=3850;Type=deletion;Left=chr1:63477950-63478425+;Right=chr1:63480740-63481156+;Distance=2790;DiscordantMatePairAlignments=134;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68164570 (chr1:63477954-63480744);Frequency=0.65
chr1	CG	SV	63477950	63478425	134	+	.	ID=3850;Type=deletion;Left=chr1:63477950-63478425;Right=chr1:63480740-63481156
chr1	CG	SV	63480740	63481156	134	+	.	ID=3850;Type=deletion;Left=chr1:63477950-63478425;Right=chr1:63480740-63481156
chr1	CG	SV	67780611	67781747	58	.	.	ID=3848;Type=deletion;Left=chr1:67780611-67781036+;Right=chr1:67781468-67781747+;Distance=857;DiscordantMatePairAlignments=58;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	67780611	67781036	58	+	.	ID=3848;Type=deletion;Left=chr1:67780611-67781036;Right=chr1:67781468-67781747
chr1	CG	SV	67781468	67781747	58	+	.	ID=3848;Type=deletion;Left=chr1:67780611-67781036;Right=chr1:67781468-67781747
chr1	CG	SV	70718793	70719511	10	.	.	ID=3846;Type=deletion;Left=chr1:70718793-70719223+;Right=chr1:70719124-70719511+;Distance=331;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;RightRepeat=L1MC5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs66657030 (chr1:70718793-70719124);Frequency=1.00
chr1	CG	SV	70718793	70719223	10	+	.	ID=3846;Type=deletion;Left=chr1:70718793-70719223;Right=chr1:70719124-70719511
chr1	CG	SV	70719124	70719511	10	+	.	ID=3846;Type=deletion;Left=chr1:70718793-70719223;Right=chr1:70719124-70719511
chr1	CG	SV	72528284	72537120	58	.	.	ID=3844;Type=deletion;Left=chr1:72528284-72528903+;Right=chr1:72536666-72537120+;Distance=8382;DiscordantMatePairAlignments=58;LeftRepeat=MLT2D:LTR:ERVL;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	72528284	72528903	58	+	.	ID=3844;Type=deletion;Left=chr1:72528284-72528903;Right=chr1:72536666-72537120
chr1	CG	SV	72536666	72537120	58	+	.	ID=3844;Type=deletion;Left=chr1:72528284-72528903;Right=chr1:72536666-72537120
chr1	CG	SV	72538912	72584893	89	.	.	ID=3843;Type=deletion;Left=chr1:72538912-72539358+;Right=chr1:72584428-72584893+;Distance=45516;DiscordantMatePairAlignments=89;LeftRepeat=;RightRepeat=MLT1E3:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	72538912	72539358	89	+	.	ID=3843;Type=deletion;Left=chr1:72538912-72539358;Right=chr1:72584428-72584893
chr1	CG	SV	72584428	72584893	89	+	.	ID=3843;Type=deletion;Left=chr1:72538912-72539358;Right=chr1:72584428-72584893
chr1	CG	SV	75784469	75785305	14	.	.	ID=3840;Type=deletion;Left=chr1:75784469-75784924+;Right=chr1:75784799-75785305+;Distance=330;DiscordantMatePairAlignments=14;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_001130058:-;NM_152697:-;RightGenes=NM_001130058:-;NM_152697:-;XRef=rs6143283 (chr1:75784453-75784783);Frequency=0.94
chr1	CG	SV	75784469	75784924	14	+	.	ID=3840;Type=deletion;Left=chr1:75784469-75784924;Right=chr1:75784799-75785305
chr1	CG	SV	75784799	75785305	14	+	.	ID=3840;Type=deletion;Left=chr1:75784469-75784924;Right=chr1:75784799-75785305
chr1	CG	SV	77248678	77249313	43	.	.	ID=1281;Type=tandem-duplication;Left=chr1:77248678-77248983-;Right=chr1:77248950-77249313-;Distance=330;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=;LeftGenes=NM_030965:+;RightGenes=NM_030965:+;XRef=;Frequency=0.18
chr1	CG	SV	77248678	77248983	43	-	.	ID=1281;Type=tandem-duplication;Left=chr1:77248678-77248983;Right=chr1:77248950-77249313
chr1	CG	SV	77248950	77249313	43	-	.	ID=1281;Type=tandem-duplication;Left=chr1:77248678-77248983;Right=chr1:77248950-77249313
chr1	CG	SV	80566991	80568117	43	.	.	ID=1056;Type=probable-inversion;Left=chr1:80566991-80567211-;Right=chr1:80567699-80568117+;Distance=488;DiscordantMatePairAlignments=43;LeftRepeat=L1MC:LINE:L1;RightRepeat=(TA)n:Simple_repeat:Simple_repeat;Tandem AC;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	80566991	80567211	43	-	.	ID=1056;Type=probable-inversion;Left=chr1:80566991-80567211;Right=chr1:80567699-80568117
chr1	CG	SV	80567699	80568117	43	-	.	ID=1056;Type=probable-inversion;Left=chr1:80566991-80567211;Right=chr1:80567699-80568117
chr1	CG	SV	80966941	80967598	15	.	.	ID=3836;Type=deletion;Left=chr1:80966941-80967369+;Right=chr1:80967268-80967598+;Distance=327;DiscordantMatePairAlignments=15;LeftRepeat=ERVL-E:LTR:ERVL;RightRepeat=ERVL-E:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	80966941	80967369	15	+	.	ID=3836;Type=deletion;Left=chr1:80966941-80967369;Right=chr1:80967268-80967598
chr1	CG	SV	80967268	80967598	15	+	.	ID=3836;Type=deletion;Left=chr1:80966941-80967369;Right=chr1:80967268-80967598
chr1	CG	SV	81177360	81183961	40	.	.	ID=3835;Type=deletion;Left=chr1:81177360-81177754+;Right=chr1:81183551-81183961+;Distance=6191;DiscordantMatePairAlignments=40;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=MSTD:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	81177360	81177754	40	+	.	ID=3835;Type=deletion;Left=chr1:81177360-81177754;Right=chr1:81183551-81183961
chr1	CG	SV	81183551	81183961	40	+	.	ID=3835;Type=deletion;Left=chr1:81177360-81177754;Right=chr1:81183551-81183961
chr1	CG	SV	81432939	81434143	48	.	.	ID=4058;Type=probable-inversion;Left=chr1:81432939-81433287+;Right=chr1:81433958-81434143-;Distance=1204;DiscordantMatePairAlignments=48;LeftRepeat=;RightRepeat=L1MD3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr1	CG	SV	81432939	81433287	48	+	.	ID=4058;Type=probable-inversion;Left=chr1:81432939-81433287;Right=chr1:81433958-81434143
chr1	CG	SV	81433958	81434143	48	+	.	ID=4058;Type=probable-inversion;Left=chr1:81432939-81433287;Right=chr1:81433958-81434143
chr1	CG	SV	82898564	82900643	89	.	.	ID=3833;Type=deletion;Left=chr1:82898564-82899016+;Right=chr1:82900175-82900643+;Distance=1611;DiscordantMatePairAlignments=89;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70959281 (chr1:82898546-82900157);Frequency=1.00
chr1	CG	SV	82898564	82899016	89	+	.	ID=3833;Type=deletion;Left=chr1:82898564-82899016;Right=chr1:82900175-82900643
chr1	CG	SV	82900175	82900643	89	+	.	ID=3833;Type=deletion;Left=chr1:82898564-82899016;Right=chr1:82900175-82900643
chr1	CG	SV	84290527	84297547	34	.	.	ID=3832;Type=deletion;Left=chr1:84290527-84290907+;Right=chr1:84297231-84297547+;Distance=6704;DiscordantMatePairAlignments=34;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66528373 (chr1:84290513-84297217);Frequency=1.00
chr1	CG	SV	84290527	84290907	34	+	.	ID=3832;Type=deletion;Left=chr1:84290527-84290907;Right=chr1:84297231-84297547
chr1	CG	SV	84297231	84297547	34	+	.	ID=3832;Type=deletion;Left=chr1:84290527-84290907;Right=chr1:84297231-84297547
chr1	CG	SV	85521222	85522008	37	.	.	ID=3830;Type=deletion;Left=chr1:85521222-85521583+;Right=chr1:85521552-85522008+;Distance=330;DiscordantMatePairAlignments=37;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66759539 (chr1:85521222-85521552);Frequency=0.94
chr1	CG	SV	85521222	85521583	37	+	.	ID=3830;Type=deletion;Left=chr1:85521222-85521583;Right=chr1:85521552-85522008
chr1	CG	SV	85521552	85522008	37	+	.	ID=3830;Type=deletion;Left=chr1:85521222-85521583;Right=chr1:85521552-85522008
chr1	CG	SV	86173439	86177609	71	.	.	ID=3829;Type=deletion;Left=chr1:86173439-86173838+;Right=chr1:86177126-86177609+;Distance=3687;DiscordantMatePairAlignments=71;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=LTR16A:LTR:ERVL;Self chain;LeftGenes=NM_152890:-;RightGenes=NM_152890:-;XRef=;Frequency=0.12
chr1	CG	SV	86173439	86173838	71	+	.	ID=3829;Type=deletion;Left=chr1:86173439-86173838;Right=chr1:86177126-86177609
chr1	CG	SV	86177126	86177609	71	+	.	ID=3829;Type=deletion;Left=chr1:86173439-86173838;Right=chr1:86177126-86177609
chr1	CG	SV	86178393	86179140	13	.	.	ID=3828;Type=deletion;Left=chr1:86178393-86178712+;Right=chr1:86178721-86179140+;Distance=328;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_152890:-;RightGenes=NM_152890:-;XRef=rs67832189 (chr1:86178393-86178721);Frequency=0.88
chr1	CG	SV	86178393	86178712	13	+	.	ID=3828;Type=deletion;Left=chr1:86178393-86178712;Right=chr1:86178721-86179140
chr1	CG	SV	86178721	86179140	13	+	.	ID=3828;Type=deletion;Left=chr1:86178393-86178712;Right=chr1:86178721-86179140
chr1	CG	SV	87689129	87689928	20	.	.	ID=1280;Type=tandem-duplication;Left=chr1:87689129-87689469-;Right=chr1:87689538-87689928-;Distance=459;DiscordantMatePairAlignments=20;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr1	CG	SV	87689129	87689469	20	-	.	ID=1280;Type=tandem-duplication;Left=chr1:87689129-87689469;Right=chr1:87689538-87689928
chr1	CG	SV	87689538	87689928	20	-	.	ID=1280;Type=tandem-duplication;Left=chr1:87689129-87689469;Right=chr1:87689538-87689928
chr1	CG	SV	89371762	89425145	17	.	.	ID=3826;Type=deletion;Left=chr1:89371762-89371955+;Right=chr1:89424837-89425145+;Distance=53075;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_207398:-;RightGenes=NM_052941:-;XRef=;Frequency=0.35
chr1	CG	SV	89371762	89371955	17	+	.	ID=3826;Type=deletion;Left=chr1:89371762-89371955;Right=chr1:89424837-89425145
chr1	CG	SV	89424837	89425145	17	+	.	ID=3826;Type=deletion;Left=chr1:89371762-89371955;Right=chr1:89424837-89425145
chr1	CG	SV	91686699	91687491	31	.	.	ID=3821;Type=deletion;Left=chr1:91686699-91686963+;Right=chr1:91687154-91687491+;Distance=455;DiscordantMatePairAlignments=31;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72186914 (chr1:91686699-91687153);Frequency=1.00
chr1	CG	SV	91686699	91686963	31	+	.	ID=3821;Type=deletion;Left=chr1:91686699-91686963;Right=chr1:91687154-91687491
chr1	CG	SV	91687154	91687491	31	+	.	ID=3821;Type=deletion;Left=chr1:91686699-91686963;Right=chr1:91687154-91687491
chr1	CG	SV	93034666	93035409	18	.	.	ID=1054;Type=probable-inversion;Left=chr1:93034666-93034805-;Right=chr1:93035056-93035409+;Distance=251;DiscordantMatePairAlignments=18;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	93034666	93034805	18	-	.	ID=1054;Type=probable-inversion;Left=chr1:93034666-93034805;Right=chr1:93035056-93035409
chr1	CG	SV	93035056	93035409	18	-	.	ID=1054;Type=probable-inversion;Left=chr1:93034666-93034805;Right=chr1:93035056-93035409
chr1	CG	SV	94060963	94064299	133	.	.	ID=3820;Type=deletion;Left=chr1:94060963-94061248+;Right=chr1:94063847-94064299+;Distance=2884;DiscordantMatePairAlignments=133;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68045023 (chr1:94060963-94063847);Frequency=0.82
chr1	CG	SV	94060963	94061248	133	+	.	ID=3820;Type=deletion;Left=chr1:94060963-94061248;Right=chr1:94063847-94064299
chr1	CG	SV	94063847	94064299	133	+	.	ID=3820;Type=deletion;Left=chr1:94060963-94061248;Right=chr1:94063847-94064299
chr1	CG	SV	102820280	102820921	21	.	.	ID=3819;Type=deletion;Left=chr1:102820280-102820731+;Right=chr1:102820610-102820921+;Distance=330;DiscordantMatePairAlignments=21;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66580034 (chr1:102820266-102820596);Frequency=1.00
chr1	CG	SV	102820280	102820731	21	+	.	ID=3819;Type=deletion;Left=chr1:102820280-102820731;Right=chr1:102820610-102820921
chr1	CG	SV	102820610	102820921	21	+	.	ID=3819;Type=deletion;Left=chr1:102820280-102820731;Right=chr1:102820610-102820921
chr1	CG	SV	102868668	102869393	14	.	.	ID=3818;Type=deletion;Left=chr1:102868668-102869104+;Right=chr1:102868987-102869393+;Distance=319;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66742073 (chr1:102868668-102868987);Frequency=1.00
chr1	CG	SV	102868668	102869104	14	+	.	ID=3818;Type=deletion;Left=chr1:102868668-102869104;Right=chr1:102868987-102869393
chr1	CG	SV	102868987	102869393	14	+	.	ID=3818;Type=deletion;Left=chr1:102868668-102869104;Right=chr1:102868987-102869393
chr1	CG	SV	104244722	104245641	55	.	.	ID=3817;Type=deletion;Left=chr1:104244722-104245106+;Right=chr1:104245248-104245641+;Distance=526;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66586618 (chr1:104244722-104245248);Frequency=0.76
chr1	CG	SV	104244722	104245106	55	+	.	ID=3817;Type=deletion;Left=chr1:104244722-104245106;Right=chr1:104245248-104245641
chr1	CG	SV	104245248	104245641	55	+	.	ID=3817;Type=deletion;Left=chr1:104244722-104245106;Right=chr1:104245248-104245641
chr1	CG	SV	109988723	109993161	19	.	.	ID=3813;Type=deletion;Left=chr1:109988723-109989305+;Right=chr1:109992955-109993161+;Distance=4232;DiscordantMatePairAlignments=19;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr1	CG	SV	109988723	109989305	19	+	.	ID=3813;Type=deletion;Left=chr1:109988723-109989305;Right=chr1:109992955-109993161
chr1	CG	SV	109992955	109993161	19	+	.	ID=3813;Type=deletion;Left=chr1:109988723-109989305;Right=chr1:109992955-109993161
chr1	CG	SV	112493315	112506615	40	.	.	ID=3812;Type=deletion;Left=chr1:112493315-112493705+;Right=chr1:112506228-112506615+;Distance=12913;DiscordantMatePairAlignments=40;LeftRepeat=MLT1B-int:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	112493315	112493705	40	+	.	ID=3812;Type=deletion;Left=chr1:112493315-112493705;Right=chr1:112506228-112506615
chr1	CG	SV	112506228	112506615	40	+	.	ID=3812;Type=deletion;Left=chr1:112493315-112493705;Right=chr1:112506228-112506615
chr1	CG	SV	114447402	114456333	17	.	.	ID=1053;Type=distal-duplication;Left=chr1:114447402-114447477-;Right=chr1:114455894-114456333+;Distance=8417;DiscordantMatePairAlignments=17;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_205848:-;RightGenes=NM_205848:-;XRef=;Frequency=0.76
chr1	CG	SV	114447402	114447477	17	-	.	ID=1053;Type=distal-duplication;Left=chr1:114447402-114447477;Right=chr1:114455894-114456333
chr1	CG	SV	114455894	114456333	17	-	.	ID=1053;Type=distal-duplication;Left=chr1:114447402-114447477;Right=chr1:114455894-114456333
chr1	CG	SV	114447553	114455872	22	.	.	ID=4056;Type=distal-duplication;Left=chr1:114447553-114447633+;Right=chr1:114455449-114455872-;Distance=8319;DiscordantMatePairAlignments=22;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_205848:-;RightGenes=NM_205848:-;XRef=;Frequency=0.76
chr1	CG	SV	114447553	114447633	22	+	.	ID=4056;Type=distal-duplication;Left=chr1:114447553-114447633;Right=chr1:114455449-114455872
chr1	CG	SV	114455449	114455872	22	+	.	ID=4056;Type=distal-duplication;Left=chr1:114447553-114447633;Right=chr1:114455449-114455872
chr1	CG	SV	143605644	143606796	14	.	.	ID=3805;Type=deletion;Left=chr1:143605644-143606066+;Right=chr1:143606642-143606796+;Distance=998;DiscordantMatePairAlignments=14;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;RightGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;XRef=rs68115952 (chr1:143605449-143606445);Frequency=1.00
chr1	CG	SV	143605644	143606066	14	+	.	ID=3805;Type=deletion;Left=chr1:143605644-143606066;Right=chr1:143606642-143606796
chr1	CG	SV	143606642	143606796	14	+	.	ID=3805;Type=deletion;Left=chr1:143605644-143606066;Right=chr1:143606642-143606796
chr1	CG	SV	143738103	143738867	19	.	.	ID=3801;Type=deletion;Left=chr1:143738103-143738566+;Right=chr1:143738426-143738867+;Distance=323;DiscordantMatePairAlignments=19;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_022359:-;RightGenes=NM_022359:-;XRef=rs67897961 (chr1:143738086-143738409);Frequency=1.00
chr1	CG	SV	143738103	143738566	19	+	.	ID=3801;Type=deletion;Left=chr1:143738103-143738566;Right=chr1:143738426-143738867
chr1	CG	SV	143738426	143738867	19	+	.	ID=3801;Type=deletion;Left=chr1:143738103-143738566;Right=chr1:143738426-143738867
chr1	CG	SV	143804305	143808859	449	.	.	ID=3800;Type=deletion;Left=chr1:143804305-143804837+;Right=chr1:143808440-143808859+;Distance=4135;DiscordantMatePairAlignments=449;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_004892:+;XRef=rs67330508 (chr1:143804305-143808439);Frequency=1.00
chr1	CG	SV	143804305	143804837	449	+	.	ID=3800;Type=deletion;Left=chr1:143804305-143804837;Right=chr1:143808440-143808859
chr1	CG	SV	143808440	143808859	449	+	.	ID=3800;Type=deletion;Left=chr1:143804305-143804837;Right=chr1:143808440-143808859
chr1	CG	SV	148200908	148201295	57	+	.	ID=4020;Type=interchromosomal;Left=chr1:148200908-148201295+;Right=chr5:1616120-1616581-;Distance=;DiscordantMatePairAlignments=57;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_020205:-;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	1616120	1616581	57	+	.	ID=4020;Type=interchromosomal;Left=chr1:148200908-148201295+;Right=chr5:1616120-1616581-;Distance=;DiscordantMatePairAlignments=57;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_020205:-;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	148958071	148958744	11	.	.	ID=3799;Type=deletion;Left=chr1:148958071-148958518+;Right=chr1:148958405-148958744+;Distance=334;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_032132:-;RightGenes=NM_032132:-;XRef=rs71739212 (chr1:148958059-148958393);Frequency=1.00
chr1	CG	SV	148958071	148958518	11	+	.	ID=3799;Type=deletion;Left=chr1:148958071-148958518;Right=chr1:148958405-148958744
chr1	CG	SV	148958405	148958744	11	+	.	ID=3799;Type=deletion;Left=chr1:148958071-148958518;Right=chr1:148958405-148958744
chr1	CG	SV	154110893	154111852	16	.	.	ID=3777;Type=deletion;Left=chr1:154110893-154111296+;Right=chr1:154111641-154111852+;Distance=748;DiscordantMatePairAlignments=16;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_152280:+;RightGenes=NM_152280:+;XRef=rs72087925 (chr1:154110887-154111635);Frequency=0.35
chr1	CG	SV	154110893	154111296	16	+	.	ID=3777;Type=deletion;Left=chr1:154110893-154111296;Right=chr1:154111641-154111852
chr1	CG	SV	154111641	154111852	16	+	.	ID=3777;Type=deletion;Left=chr1:154110893-154111296;Right=chr1:154111641-154111852
chr1	CG	SV	154793338	154796077	235	.	.	ID=3776;Type=deletion;Left=chr1:154793338-154793764+;Right=chr1:154795569-154796077+;Distance=2231;DiscordantMatePairAlignments=235;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_178229:-;RightGenes=NM_178229:-;XRef=rs68110015 (chr1:154793347-154795578);Frequency=1.00
chr1	CG	SV	154793338	154793764	235	+	.	ID=3776;Type=deletion;Left=chr1:154793338-154793764;Right=chr1:154795569-154796077
chr1	CG	SV	154795569	154796077	235	+	.	ID=3776;Type=deletion;Left=chr1:154793338-154793764;Right=chr1:154795569-154796077
chr1	CG	SV	157134157	157136963	15	.	.	ID=3774;Type=deletion;Left=chr1:157134157-157134479+;Right=chr1:157136608-157136963+;Distance=2451;DiscordantMatePairAlignments=15;LeftRepeat=L1MA9:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66519609 (chr1:157134154-157136605);Frequency=1.00
chr1	CG	SV	157134157	157134479	15	+	.	ID=3774;Type=deletion;Left=chr1:157134157-157134479;Right=chr1:157136608-157136963
chr1	CG	SV	157136608	157136963	15	+	.	ID=3774;Type=deletion;Left=chr1:157134157-157134479;Right=chr1:157136608-157136963
chr1	CG	SV	157915332	157916524	48	.	.	ID=3772;Type=deletion;Left=chr1:157915332-157915758+;Right=chr1:157916282-157916524+;Distance=950;DiscordantMatePairAlignments=48;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67706473 (chr1:157915331-157916281);Frequency=0.88
chr1	CG	SV	157915332	157915758	48	+	.	ID=3772;Type=deletion;Left=chr1:157915332-157915758;Right=chr1:157916282-157916524
chr1	CG	SV	157916282	157916524	48	+	.	ID=3772;Type=deletion;Left=chr1:157915332-157915758;Right=chr1:157916282-157916524
chr1	CG	SV	160319289	160320113	10	.	.	ID=3771;Type=deletion;Left=chr1:160319289-160319415+;Right=chr1:160319609-160320113+;Distance=320;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=NM_001164757:+;NM_014697:+;RightGenes=NM_001164757:+;NM_014697:+;XRef=rs70942830 (chr1:160319304-160319624);Frequency=1.00
chr1	CG	SV	160319289	160319415	10	+	.	ID=3771;Type=deletion;Left=chr1:160319289-160319415;Right=chr1:160319609-160320113
chr1	CG	SV	160319609	160320113	10	+	.	ID=3771;Type=deletion;Left=chr1:160319289-160319415;Right=chr1:160319609-160320113
chr1	CG	SV	166452513	180541276	29	.	.	ID=1050;Type=probable-inversion;Left=chr1:166452513-166452809-;Right=chr1:180540938-180541276+;Distance=14088129;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	166452513	166452809	29	-	.	ID=1050;Type=probable-inversion;Left=chr1:166452513-166452809;Right=chr1:180540938-180541276
chr1	CG	SV	180540938	180541276	29	-	.	ID=1050;Type=probable-inversion;Left=chr1:166452513-166452809;Right=chr1:180540938-180541276
chr1	CG	SV	167426661	167427453	10	.	.	ID=3769;Type=deletion;Left=chr1:167426661-167427057+;Right=chr1:167426990-167427453+;Distance=329;DiscordantMatePairAlignments=10;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_013330:-;NM_197972:-;RightGenes=NM_013330:-;NM_197972:-;XRef=rs70942835 (chr1:167426661-167426990);Frequency=0.59
chr1	CG	SV	167426661	167427057	10	+	.	ID=3769;Type=deletion;Left=chr1:167426661-167427057;Right=chr1:167426990-167427453
chr1	CG	SV	167426990	167427453	10	+	.	ID=3769;Type=deletion;Left=chr1:167426661-167427057;Right=chr1:167426990-167427453
chr1	CG	SV	175654771	175655191	23	.	.	ID=1259;Type=tandem-duplication;Left=chr1:175654771-175654988-;Right=chr1:175654984-175655191-;Distance=203;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	175654771	175654988	23	-	.	ID=1259;Type=tandem-duplication;Left=chr1:175654771-175654988;Right=chr1:175654984-175655191
chr1	CG	SV	175654984	175655191	23	-	.	ID=1259;Type=tandem-duplication;Left=chr1:175654771-175654988;Right=chr1:175654984-175655191
chr1	CG	SV	178450460	178450988	16	.	.	ID=3766;Type=deletion;Left=chr1:178450460-178450980+;Right=chr1:178450779-178450988+;Distance=319;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71879682 (chr1:178450365-178450686);Frequency=1.00
chr1	CG	SV	178450460	178450980	16	+	.	ID=3766;Type=deletion;Left=chr1:178450460-178450980;Right=chr1:178450779-178450988
chr1	CG	SV	178450779	178450988	16	+	.	ID=3766;Type=deletion;Left=chr1:178450460-178450980;Right=chr1:178450779-178450988
chr1	CG	SV	183081356	183087787	82	.	.	ID=3765;Type=deletion;Left=chr1:183081356-183081821+;Right=chr1:183087412-183087787+;Distance=6056;DiscordantMatePairAlignments=82;LeftRepeat=FLAM_C:SINE:Alu;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=NM_052966:-;RightGenes=NM_052966:-;XRef=rs67214927 (chr1:183081351-183087407);Frequency=0.59
chr1	CG	SV	183081356	183081821	82	+	.	ID=3765;Type=deletion;Left=chr1:183081356-183081821;Right=chr1:183087412-183087787
chr1	CG	SV	183087412	183087787	82	+	.	ID=3765;Type=deletion;Left=chr1:183081356-183081821;Right=chr1:183087412-183087787
chr1	CG	SV	185731451	185733522	16	.	.	ID=3763;Type=complex;Left=chr1:185731451-185731559+;Right=chr1:185733347-185733522+;Distance=1896;DiscordantMatePairAlignments=16;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185731451	185731559	16	+	.	ID=3763;Type=complex;Left=chr1:185731451-185731559;Right=chr1:185733347-185733522
chr1	CG	SV	185733347	185733522	16	+	.	ID=3763;Type=complex;Left=chr1:185731451-185731559;Right=chr1:185733347-185733522
chr1	CG	SV	185732848	185733717	55	.	.	ID=505;Type=complex;Left=chr1:185732848-185733099-;Right=chr1:185733354-185733717+;Distance=255;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185732848	185733099	55	-	.	ID=505;Type=complex;Left=chr1:185732848-185733099;Right=chr1:185733354-185733717
chr1	CG	SV	185733354	185733717	55	-	.	ID=505;Type=complex;Left=chr1:185732848-185733099;Right=chr1:185733354-185733717
chr1	CG	SV	186806079	186807254	84	.	.	ID=3761;Type=deletion;Left=chr1:186806079-186806516+;Right=chr1:186806854-186807254+;Distance=775;DiscordantMatePairAlignments=84;LeftRepeat=L1MB7:LINE:L1;RightRepeat=L1MCa:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72255816 (chr1:186806077-186806852);Frequency=1.00
chr1	CG	SV	186806079	186806516	84	+	.	ID=3761;Type=deletion;Left=chr1:186806079-186806516;Right=chr1:186806854-186807254
chr1	CG	SV	186806854	186807254	84	+	.	ID=3761;Type=deletion;Left=chr1:186806079-186806516;Right=chr1:186806854-186807254
chr1	CG	SV	187467473	187468676	13	.	.	ID=3759;Type=deletion;Left=chr1:187467473-187467818+;Right=chr1:187468454-187468676+;Distance=981;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=L1P5:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	187467473	187467818	13	+	.	ID=3759;Type=deletion;Left=chr1:187467473-187467818;Right=chr1:187468454-187468676
chr1	CG	SV	187468454	187468676	13	+	.	ID=3759;Type=deletion;Left=chr1:187467473-187467818;Right=chr1:187468454-187468676
chr1	CG	SV	195767143	195770289	115	.	.	ID=3758;Type=deletion;Left=chr1:195767143-195767573+;Right=chr1:195769906-195770289+;Distance=2763;DiscordantMatePairAlignments=115;LeftRepeat=L1HS:LINE:L1;Tandem T;RightRepeat=;LeftGenes=NM_001142795:-;RightGenes=NM_001142795:-;XRef=rs68001128 (chr1:195767143-195769906);Frequency=1.00
chr1	CG	SV	195767143	195767573	115	+	.	ID=3758;Type=deletion;Left=chr1:195767143-195767573;Right=chr1:195769906-195770289
chr1	CG	SV	195769906	195770289	115	+	.	ID=3758;Type=deletion;Left=chr1:195767143-195767573;Right=chr1:195769906-195770289
chr1	CG	SV	197040372	197042363	91	.	.	ID=3756;Type=deletion;Left=chr1:197040372-197040861+;Right=chr1:197042037-197042363+;Distance=1665;DiscordantMatePairAlignments=91;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs71795251 (chr1:197040372-197042037);Frequency=0.29
chr1	CG	SV	197040372	197040861	91	+	.	ID=3756;Type=deletion;Left=chr1:197040372-197040861;Right=chr1:197042037-197042363
chr1	CG	SV	197042037	197042363	91	+	.	ID=3756;Type=deletion;Left=chr1:197040372-197040861;Right=chr1:197042037-197042363
chr1	CG	SV	197705358	197707261	17	.	.	ID=3755;Type=deletion;Left=chr1:197705358-197705695+;Right=chr1:197706865-197707261+;Distance=1507;DiscordantMatePairAlignments=17;LeftRepeat=MLT1A1:LTR:MaLR;RightRepeat=MLT1A1:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67023442 (chr1:197705349-197706856);Frequency=1.00
chr1	CG	SV	197705358	197705695	17	+	.	ID=3755;Type=deletion;Left=chr1:197705358-197705695;Right=chr1:197706865-197707261
chr1	CG	SV	197706865	197707261	17	+	.	ID=3755;Type=deletion;Left=chr1:197705358-197705695;Right=chr1:197706865-197707261
chr1	CG	SV	203445294	203445416	15	.	.	ID=4032;Type=probable-inversion;Left=chr1:203445294-203445734+;Right=chr1:203445280-203445416-;Distance=122;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_015375:-;NM_199462:-;RightGenes=NM_015375:-;NM_199462:-;XRef=;Frequency=0.88
chr1	CG	SV	203445294	203445734	15	+	.	ID=4032;Type=probable-inversion;Left=chr1:203445294-203445734;Right=chr1:203445280-203445416
chr1	CG	SV	203445280	203445416	15	+	.	ID=4032;Type=probable-inversion;Left=chr1:203445294-203445734;Right=chr1:203445280-203445416
chr1	CG	SV	205358985	205360190	53	.	.	ID=3753;Type=deletion;Left=chr1:205358985-205359275+;Right=chr1:205359818-205360190+;Distance=833;DiscordantMatePairAlignments=53;LeftRepeat=MLT2F:LTR:ERVL;Self chain;RightRepeat=ERVL-F:LTR:ERVL;Self chain;LeftGenes=NM_000715:+;RightGenes=NM_000715:+;XRef=;Frequency=0.94
chr1	CG	SV	205358985	205359275	53	+	.	ID=3753;Type=deletion;Left=chr1:205358985-205359275;Right=chr1:205359818-205360190
chr1	CG	SV	205359818	205360190	53	+	.	ID=3753;Type=deletion;Left=chr1:205358985-205359275;Right=chr1:205359818-205360190
chr1	CG	SV	205608648	205612594	45	.	.	ID=3752;Type=deletion;Left=chr1:205608648-205609040+;Right=chr1:205612249-205612594+;Distance=3601;DiscordantMatePairAlignments=45;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66713152 (chr1:205608586-205612187);Frequency=0.59
chr1	CG	SV	205608648	205609040	45	+	.	ID=3752;Type=deletion;Left=chr1:205608648-205609040;Right=chr1:205612249-205612594
chr1	CG	SV	205612249	205612594	45	+	.	ID=3752;Type=deletion;Left=chr1:205608648-205609040;Right=chr1:205612249-205612594
chr1	CG	SV	208144678	208153031	127	.	.	ID=3751;Type=deletion;Left=chr1:208144678-208145066+;Right=chr1:208152600-208153031+;Distance=7922;DiscordantMatePairAlignments=127;LeftRepeat=;RightRepeat=HERVL:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs66502507 (chr1:208144678-208152594);Frequency=0.53
chr1	CG	SV	208144678	208145066	127	+	.	ID=3751;Type=deletion;Left=chr1:208144678-208145066;Right=chr1:208152600-208153031
chr1	CG	SV	208152600	208153031	127	+	.	ID=3751;Type=deletion;Left=chr1:208144678-208145066;Right=chr1:208152600-208153031
chr1	CG	SV	208893637	208894171	12	.	.	ID=1258;Type=tandem-duplication;Left=chr1:208893637-208893848-;Right=chr1:208894093-208894171-;Distance=323;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem period 14;Tandem period 30;RightRepeat=Self chain;Tandem period 14;Tandem period 30;LeftGenes=NM_001122834:+;NM_018194:+;RightGenes=NM_001122834:+;NM_018194:+;XRef=;Frequency=1.00
chr1	CG	SV	208893637	208893848	12	-	.	ID=1258;Type=tandem-duplication;Left=chr1:208893637-208893848;Right=chr1:208894093-208894171
chr1	CG	SV	208894093	208894171	12	-	.	ID=1258;Type=tandem-duplication;Left=chr1:208893637-208893848;Right=chr1:208894093-208894171
chr1	CG	SV	210537770	210539602	41	.	.	ID=3749;Type=deletion;Left=chr1:210537770-210538146+;Right=chr1:210539251-210539602+;Distance=1481;DiscordantMatePairAlignments=41;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_006243:+;RightGenes=NM_006243:+;XRef=rs67390846 (chr1:210537758-210539239);Frequency=0.88
chr1	CG	SV	210537770	210538146	41	+	.	ID=3749;Type=deletion;Left=chr1:210537770-210538146;Right=chr1:210539251-210539602
chr1	CG	SV	210539251	210539602	41	+	.	ID=3749;Type=deletion;Left=chr1:210537770-210538146;Right=chr1:210539251-210539602
chr1	CG	SV	216249125	216255596	45	.	.	ID=3747;Type=deletion;Left=chr1:216249125-216249440+;Right=chr1:216255231-216255596+;Distance=6106;DiscordantMatePairAlignments=45;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	216249125	216249440	45	+	.	ID=3747;Type=deletion;Left=chr1:216249125-216249440;Right=chr1:216255231-216255596
chr1	CG	SV	216255231	216255596	45	+	.	ID=3747;Type=deletion;Left=chr1:216249125-216249440;Right=chr1:216255231-216255596
chr1	CG	SV	216852553	216853329	14	.	.	ID=3745;Type=deletion;Left=chr1:216852553-216853035+;Right=chr1:216852873-216853329+;Distance=320;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	216852553	216853035	14	+	.	ID=3745;Type=deletion;Left=chr1:216852553-216853035;Right=chr1:216852873-216853329
chr1	CG	SV	216852873	216853329	14	+	.	ID=3745;Type=deletion;Left=chr1:216852553-216853035;Right=chr1:216852873-216853329
chr1	CG	SV	217989946	217990666	12	.	.	ID=3744;Type=deletion;Left=chr1:217989946-217990375+;Right=chr1:217990264-217990666+;Distance=318;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;RightRepeat=MER44C:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=rs10522402 (chr1:217989931-217990249);Frequency=0.82
chr1	CG	SV	217989946	217990375	12	+	.	ID=3744;Type=deletion;Left=chr1:217989946-217990375;Right=chr1:217990264-217990666
chr1	CG	SV	217990264	217990666	12	+	.	ID=3744;Type=deletion;Left=chr1:217989946-217990375;Right=chr1:217990264-217990666
chr1	CG	SV	220440788	220447405	19	.	.	ID=3741;Type=deletion;Left=chr1:220440788-220441199+;Right=chr1:220447162-220447405+;Distance=6374;DiscordantMatePairAlignments=19;LeftRepeat=AluSg:SINE:Alu;RightRepeat=L1PA17:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	220440788	220441199	19	+	.	ID=3741;Type=deletion;Left=chr1:220440788-220441199;Right=chr1:220447162-220447405
chr1	CG	SV	220447162	220447405	19	+	.	ID=3741;Type=deletion;Left=chr1:220440788-220441199;Right=chr1:220447162-220447405
chr1	CG	SV	221270237	221270911	41	-	.	ID=380;Type=interchromosomal;Left=chr1:221270237-221270911-;Right=chr15:63333071-63333548+;Distance=;DiscordantMatePairAlignments=41;LeftRepeat=MER5B:DNA:MER1_type;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	63333071	63333548	41	-	.	ID=380;Type=interchromosomal;Left=chr1:221270237-221270911-;Right=chr15:63333071-63333548+;Distance=;DiscordantMatePairAlignments=41;LeftRepeat=MER5B:DNA:MER1_type;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	222313738	222314639	236	.	.	ID=3740;Type=deletion;Left=chr1:222313738-222314278+;Right=chr1:222314214-222314639+;Distance=476;DiscordantMatePairAlignments=236;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67408596 (chr1:222313740-222314216);Frequency=1.00
chr1	CG	SV	222313738	222314278	236	+	.	ID=3740;Type=deletion;Left=chr1:222313738-222314278;Right=chr1:222314214-222314639
chr1	CG	SV	222314214	222314639	236	+	.	ID=3740;Type=deletion;Left=chr1:222313738-222314278;Right=chr1:222314214-222314639
chr1	CG	SV	222459457	222460225	37	.	.	ID=3739;Type=deletion;Left=chr1:222459457-222459950+;Right=chr1:222459770-222460225+;Distance=313;DiscordantMatePairAlignments=37;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10525121 (chr1:222459457-222459770);Frequency=1.00
chr1	CG	SV	222459457	222459950	37	+	.	ID=3739;Type=deletion;Left=chr1:222459457-222459950;Right=chr1:222459770-222460225
chr1	CG	SV	222459770	222460225	37	+	.	ID=3739;Type=deletion;Left=chr1:222459457-222459950;Right=chr1:222459770-222460225
chr1	CG	SV	223828944	223829450	10	.	.	ID=3738;Type=deletion;Left=chr1:223828944-223829445+;Right=chr1:223829262-223829450+;Distance=318;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=NM_001008493:-;NM_018212:-;RightGenes=NM_001008493:-;NM_018212:-;XRef=;Frequency=1.00
chr1	CG	SV	223828944	223829445	10	+	.	ID=3738;Type=deletion;Left=chr1:223828944-223829445;Right=chr1:223829262-223829450
chr1	CG	SV	223829262	223829450	10	+	.	ID=3738;Type=deletion;Left=chr1:223828944-223829445;Right=chr1:223829262-223829450
chr1	CG	SV	224069440	224070300	37	.	.	ID=3737;Type=deletion;Left=chr1:224069440-224069827+;Right=chr1:224069767-224070300+;Distance=327;DiscordantMatePairAlignments=37;LeftRepeat=;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_001136018:+;RightGenes=NM_001136018:+;XRef=;Frequency=0.35
chr1	CG	SV	224069440	224069827	37	+	.	ID=3737;Type=deletion;Left=chr1:224069440-224069827;Right=chr1:224069767-224070300
chr1	CG	SV	224069767	224070300	37	+	.	ID=3737;Type=deletion;Left=chr1:224069440-224069827;Right=chr1:224069767-224070300
chr1	CG	SV	227879160	227887893	75	.	.	ID=3733;Type=deletion;Left=chr1:227879160-227879442+;Right=chr1:227887463-227887893+;Distance=8303;DiscordantMatePairAlignments=75;LeftRepeat=;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66826980 (chr1:227879160-227887463);Frequency=0.47
chr1	CG	SV	227879160	227879442	75	+	.	ID=3733;Type=deletion;Left=chr1:227879160-227879442;Right=chr1:227887463-227887893
chr1	CG	SV	227887463	227887893	75	+	.	ID=3733;Type=deletion;Left=chr1:227879160-227879442;Right=chr1:227887463-227887893
chr1	CG	SV	228199261	228200935	64	.	.	ID=3732;Type=deletion;Left=chr1:228199261-228199727+;Right=chr1:228200501-228200935+;Distance=1240;DiscordantMatePairAlignments=64;LeftRepeat=AluSc:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr1	CG	SV	228199261	228199727	64	+	.	ID=3732;Type=deletion;Left=chr1:228199261-228199727;Right=chr1:228200501-228200935
chr1	CG	SV	228200501	228200935	64	+	.	ID=3732;Type=deletion;Left=chr1:228199261-228199727;Right=chr1:228200501-228200935
chr1	CG	SV	234615726	234618433	40	.	.	ID=3727;Type=deletion;Left=chr1:234615726-234616109+;Right=chr1:234617969-234618433+;Distance=2243;DiscordantMatePairAlignments=40;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67414199 (chr1:234615726-234617969);Frequency=1.00
chr1	CG	SV	234615726	234616109	40	+	.	ID=3727;Type=deletion;Left=chr1:234615726-234616109;Right=chr1:234617969-234618433
chr1	CG	SV	234617969	234618433	40	+	.	ID=3727;Type=deletion;Left=chr1:234615726-234616109;Right=chr1:234617969-234618433
chr1	CG	SV	236918939	236920157	21	.	.	ID=3725;Type=deletion;Left=chr1:236918939-236919369+;Right=chr1:236919882-236920157+;Distance=943;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr1	CG	SV	236918939	236919369	21	+	.	ID=3725;Type=deletion;Left=chr1:236918939-236919369;Right=chr1:236919882-236920157
chr1	CG	SV	236919882	236920157	21	+	.	ID=3725;Type=deletion;Left=chr1:236918939-236919369;Right=chr1:236919882-236920157
chr1	CG	SV	238707865	238708551	25	.	.	ID=3723;Type=deletion;Left=chr1:238707865-238708287+;Right=chr1:238708267-238708551+;Distance=402;DiscordantMatePairAlignments=25;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs70947197 (chr1:238707835-238708237);Frequency=0.76
chr1	CG	SV	238707865	238708287	25	+	.	ID=3723;Type=deletion;Left=chr1:238707865-238708287;Right=chr1:238708267-238708551
chr1	CG	SV	238708267	238708551	25	+	.	ID=3723;Type=deletion;Left=chr1:238707865-238708287;Right=chr1:238708267-238708551
chr1	CG	SV	239216496	239217251	14	.	.	ID=3722;Type=deletion;Left=chr1:239216496-239216794+;Right=chr1:239216821-239217251+;Distance=325;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_002924:-;RightGenes=NM_002924:-;XRef=rs10527858 (chr1:239216496-239216821);Frequency=1.00
chr1	CG	SV	239216496	239216794	14	+	.	ID=3722;Type=deletion;Left=chr1:239216496-239216794;Right=chr1:239216821-239217251
chr1	CG	SV	239216821	239217251	14	+	.	ID=3722;Type=deletion;Left=chr1:239216496-239216794;Right=chr1:239216821-239217251
chr1	CG	SV	239702746	243353657	46	.	.	ID=4029;Type=probable-inversion;Left=chr1:239702746-239703095+;Right=chr1:243353244-243353657-;Distance=3650911;DiscordantMatePairAlignments=46;LeftRepeat=L1MC2:LINE:L1;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001143943:+;NR_026586:+;NR_026587:+;XRef=;Frequency=0.00
chr1	CG	SV	239702746	239703095	46	+	.	ID=4029;Type=probable-inversion;Left=chr1:239702746-239703095;Right=chr1:243353244-243353657
chr1	CG	SV	243353244	243353657	46	+	.	ID=4029;Type=probable-inversion;Left=chr1:239702746-239703095;Right=chr1:243353244-243353657
chr1	CG	SV	241194420	241196175	36	.	.	ID=3718;Type=deletion;Left=chr1:241194420-241194846+;Right=chr1:241195864-241196175+;Distance=1444;DiscordantMatePairAlignments=36;LeftRepeat=AluJo:SINE:Alu;SegDup;Self chain;RightRepeat=AluSp:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr1	CG	SV	241194420	241194846	36	+	.	ID=3718;Type=deletion;Left=chr1:241194420-241194846;Right=chr1:241195864-241196175
chr1	CG	SV	241195864	241196175	36	+	.	ID=3718;Type=deletion;Left=chr1:241194420-241194846;Right=chr1:241195864-241196175
chr1	CG	SV	241849368	241850785	114	.	.	ID=3717;Type=deletion;Left=chr1:241849368-241849746+;Right=chr1:241850378-241850785+;Distance=1010;DiscordantMatePairAlignments=114;LeftRepeat=L1MA4:LINE:L1;RightRepeat=;LeftGenes=NM_005465:-;NM_181690:-;RightGenes=NM_005465:-;NM_181690:-;XRef=rs72260277 (chr1:241849390-241850386);Frequency=0.94
chr1	CG	SV	241849368	241849746	114	+	.	ID=3717;Type=deletion;Left=chr1:241849368-241849746;Right=chr1:241850378-241850785
chr1	CG	SV	241850378	241850785	114	+	.	ID=3717;Type=deletion;Left=chr1:241849368-241849746;Right=chr1:241850378-241850785
chr1	CG	SV	245917098	245923512	34	.	.	ID=3715;Type=deletion;Left=chr1:245917098-245917446+;Right=chr1:245923151-245923512+;Distance=6053;DiscordantMatePairAlignments=34;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72075933 (chr1:245917078-245923131);Frequency=0.94
chr1	CG	SV	245917098	245917446	34	+	.	ID=3715;Type=deletion;Left=chr1:245917098-245917446;Right=chr1:245923151-245923512
chr1	CG	SV	245923151	245923512	34	+	.	ID=3715;Type=deletion;Left=chr1:245917098-245917446;Right=chr1:245923151-245923512
chr2	CG	SV	1337076	1337912	56	.	.	ID=3713;Type=deletion;Left=chr2:1337076-1337446+;Right=chr2:1337523-1337912+;Distance=447;DiscordantMatePairAlignments=56;LeftRepeat=Self chain;Tandem period 106;RightRepeat=MIRb:SINE:MIR;Self chain;Tandem period 115;LeftGenes=NM_018968:+;RightGenes=NM_018968:+;XRef=rs66735644 (chr2:1337076-1337519);Frequency=0.94
chr2	CG	SV	1337076	1337446	56	+	.	ID=3713;Type=deletion;Left=chr2:1337076-1337446;Right=chr2:1337523-1337912
chr2	CG	SV	1337523	1337912	56	+	.	ID=3713;Type=deletion;Left=chr2:1337076-1337446;Right=chr2:1337523-1337912
chr2	CG	SV	1602104	1602783	20	.	.	ID=3711;Type=deletion;Left=chr2:1602104-1602558+;Right=chr2:1602491-1602783+;Distance=387;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;Tandem period 43;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr2	CG	SV	1602104	1602558	20	+	.	ID=3711;Type=deletion;Left=chr2:1602104-1602558;Right=chr2:1602491-1602783
chr2	CG	SV	1602491	1602783	20	+	.	ID=3711;Type=deletion;Left=chr2:1602104-1602558;Right=chr2:1602491-1602783
chr2	CG	SV	1780739	1781457	39	.	.	ID=3710;Type=deletion;Left=chr2:1780739-1781191+;Right=chr2:1781062-1781457+;Distance=323;DiscordantMatePairAlignments=39;LeftRepeat=Self chain;Tandem period 29;Tandem period 59;Tandem period 88;RightRepeat=Self chain;Tandem period 29;Tandem period 59;LeftGenes=NM_015025:-;RightGenes=NM_015025:-;XRef=rs71915727 (chr2:1780621-1780945);Frequency=0.71
chr2	CG	SV	1780739	1781191	39	+	.	ID=3710;Type=deletion;Left=chr2:1780739-1781191;Right=chr2:1781062-1781457
chr2	CG	SV	1781062	1781457	39	+	.	ID=3710;Type=deletion;Left=chr2:1780739-1781191;Right=chr2:1781062-1781457
chr2	CG	SV	2628428	2628590	19	.	.	ID=1251;Type=tandem-duplication;Left=chr2:2628428-2628509-;Right=chr2:2628505-2628590-;Distance=81;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;Tandem period 36;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr2	CG	SV	2628428	2628509	19	-	.	ID=1251;Type=tandem-duplication;Left=chr2:2628428-2628509;Right=chr2:2628505-2628590
chr2	CG	SV	2628505	2628590	19	-	.	ID=1251;Type=tandem-duplication;Left=chr2:2628428-2628509;Right=chr2:2628505-2628590
chr2	CG	SV	2777781	2778671	112	.	.	ID=3709;Type=deletion;Left=chr2:2777781-2778221+;Right=chr2:2778253-2778671+;Distance=472;DiscordantMatePairAlignments=112;LeftRepeat=Self chain;Tandem period 31;Tandem period 32;Tandem period 63;RightRepeat=Self chain;Tandem period 29;LeftGenes=;RightGenes=;XRef=rs67035310 (chr2:2777781-2778251);Frequency=0.76
chr2	CG	SV	2777781	2778221	112	+	.	ID=3709;Type=deletion;Left=chr2:2777781-2778221;Right=chr2:2778253-2778671
chr2	CG	SV	2778253	2778671	112	+	.	ID=3709;Type=deletion;Left=chr2:2777781-2778221;Right=chr2:2778253-2778671
chr2	CG	SV	4759185	4765625	52	.	.	ID=3708;Type=deletion;Left=chr2:4759185-4759504+;Right=chr2:4765250-4765625+;Distance=6065;DiscordantMatePairAlignments=52;LeftRepeat=;RightRepeat=L1M:LINE:L1;LeftGenes=;RightGenes=;XRef=rs74164256 (chr2:4759185-4765250);Frequency=1.00
chr2	CG	SV	4759185	4759504	52	+	.	ID=3708;Type=deletion;Left=chr2:4759185-4759504;Right=chr2:4765250-4765625
chr2	CG	SV	4765250	4765625	52	+	.	ID=3708;Type=deletion;Left=chr2:4759185-4759504;Right=chr2:4765250-4765625
chr2	CG	SV	7014439	7017879	86	.	.	ID=3707;Type=deletion;Left=chr2:7014439-7014841+;Right=chr2:7017433-7017879+;Distance=2994;DiscordantMatePairAlignments=86;LeftRepeat=;RightRepeat=MSTC:LTR:MaLR;LeftGenes=NM_014746:+;RightGenes=NM_014746:+;XRef=;Frequency=0.00
chr2	CG	SV	7014439	7014841	86	+	.	ID=3707;Type=deletion;Left=chr2:7014439-7014841;Right=chr2:7017433-7017879
chr2	CG	SV	7017433	7017879	86	+	.	ID=3707;Type=deletion;Left=chr2:7014439-7014841;Right=chr2:7017433-7017879
chr2	CG	SV	8534263	8534955	14	.	.	ID=3706;Type=deletion;Left=chr2:8534263-8534752+;Right=chr2:8534570-8534955+;Distance=307;DiscordantMatePairAlignments=14;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs74164259 (chr2:8534264-8534571);Frequency=1.00
chr2	CG	SV	8534263	8534752	14	+	.	ID=3706;Type=deletion;Left=chr2:8534263-8534752;Right=chr2:8534570-8534955
chr2	CG	SV	8534570	8534955	14	+	.	ID=3706;Type=deletion;Left=chr2:8534263-8534752;Right=chr2:8534570-8534955
chr2	CG	SV	9876688	9877466	52	.	.	ID=3705;Type=deletion;Left=chr2:9876688-9877054+;Right=chr2:9877038-9877466+;Distance=350;DiscordantMatePairAlignments=52;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=FRAM:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr2	CG	SV	9876688	9877054	52	+	.	ID=3705;Type=deletion;Left=chr2:9876688-9877054;Right=chr2:9877038-9877466
chr2	CG	SV	9877038	9877466	52	+	.	ID=3705;Type=deletion;Left=chr2:9876688-9877054;Right=chr2:9877038-9877466
chr2	CG	SV	10743489	10744646	81	.	.	ID=4028;Type=distal-duplication;Left=chr2:10743489-10743878+;Right=chr2:10744470-10744646-;Distance=1157;DiscordantMatePairAlignments=81;LeftRepeat=AluJb:SINE:Alu;RightRepeat=L3:LINE:CR1;LeftGenes=NM_024894:-;RightGenes=NM_024894:-;XRef=;Frequency=0.35
chr2	CG	SV	10743489	10743878	81	+	.	ID=4028;Type=distal-duplication;Left=chr2:10743489-10743878;Right=chr2:10744470-10744646
chr2	CG	SV	10744470	10744646	81	+	.	ID=4028;Type=distal-duplication;Left=chr2:10743489-10743878;Right=chr2:10744470-10744646
chr2	CG	SV	10743042	10744645	72	.	.	ID=497;Type=distal-duplication;Left=chr2:10743042-10743496-;Right=chr2:10744477-10744645+;Distance=981;DiscordantMatePairAlignments=72;LeftRepeat=AluJb:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=NM_024894:-;RightGenes=NM_024894:-;XRef=;Frequency=0.35
chr2	CG	SV	10743042	10743496	72	-	.	ID=497;Type=distal-duplication;Left=chr2:10743042-10743496;Right=chr2:10744477-10744645
chr2	CG	SV	10744477	10744645	72	-	.	ID=497;Type=distal-duplication;Left=chr2:10743042-10743496;Right=chr2:10744477-10744645
chr2	CG	SV	11166249	11166817	23	.	.	ID=3704;Type=deletion;Left=chr2:11166249-11166701+;Right=chr2:11166610-11166817+;Distance=361;DiscordantMatePairAlignments=23;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66907370 (chr2:11165958-11166323);Frequency=0.35
chr2	CG	SV	11166249	11166701	23	+	.	ID=3704;Type=deletion;Left=chr2:11166249-11166701;Right=chr2:11166610-11166817
chr2	CG	SV	11166610	11166817	23	+	.	ID=3704;Type=deletion;Left=chr2:11166249-11166701;Right=chr2:11166610-11166817
chr2	CG	SV	14595273	14687926	50	.	.	ID=3703;Type=deletion;Left=chr2:14595273-14595730+;Right=chr2:14687504-14687926+;Distance=92231;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	14595273	14595730	50	+	.	ID=3703;Type=deletion;Left=chr2:14595273-14595730;Right=chr2:14687504-14687926
chr2	CG	SV	14687504	14687926	50	+	.	ID=3703;Type=deletion;Left=chr2:14595273-14595730;Right=chr2:14687504-14687926
chr2	CG	SV	16168571	16169363	10	.	.	ID=3702;Type=deletion;Left=chr2:16168571-16168977+;Right=chr2:16168896-16169363+;Distance=325;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs74164266 (chr2:16168571-16168896);Frequency=0.94
chr2	CG	SV	16168571	16168977	10	+	.	ID=3702;Type=deletion;Left=chr2:16168571-16168977;Right=chr2:16168896-16169363
chr2	CG	SV	16168896	16169363	10	+	.	ID=3702;Type=deletion;Left=chr2:16168571-16168977;Right=chr2:16168896-16169363
chr2	CG	SV	16269891	16271439	20	.	.	ID=3701;Type=deletion;Left=chr2:16269891-16270229+;Right=chr2:16271245-16271439+;Distance=1354;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	16269891	16270229	20	+	.	ID=3701;Type=deletion;Left=chr2:16269891-16270229;Right=chr2:16271245-16271439
chr2	CG	SV	16271245	16271439	20	+	.	ID=3701;Type=deletion;Left=chr2:16269891-16270229;Right=chr2:16271245-16271439
chr2	CG	SV	17109608	17110039	64	-	.	ID=466;Type=interchromosomal;Left=chr2:17109608-17110039-;Right=chr9:121845640-121846111+;Distance=;DiscordantMatePairAlignments=64;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	121845640	121846111	64	-	.	ID=466;Type=interchromosomal;Left=chr2:17109608-17110039-;Right=chr9:121845640-121846111+;Distance=;DiscordantMatePairAlignments=64;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	20530159	20530929	15	.	.	ID=3700;Type=deletion;Left=chr2:20530159-20530542+;Right=chr2:20530466-20530929+;Distance=307;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67436233 (chr2:20530159-20530466);Frequency=0.47
chr2	CG	SV	20530159	20530542	15	+	.	ID=3700;Type=deletion;Left=chr2:20530159-20530542;Right=chr2:20530466-20530929
chr2	CG	SV	20530466	20530929	15	+	.	ID=3700;Type=deletion;Left=chr2:20530159-20530542;Right=chr2:20530466-20530929
chr2	CG	SV	33077966	33081178	112	.	.	ID=3694;Type=deletion;Left=chr2:33077966-33078346+;Right=chr2:33080796-33081178+;Distance=2830;DiscordantMatePairAlignments=112;LeftRepeat=MER5B:DNA:MER1_type;RightRepeat=;LeftGenes=NM_206943:+;RightGenes=NM_206943:+;XRef=rs72458672 (chr2:33077966-33080796);Frequency=0.59
chr2	CG	SV	33077966	33078346	112	+	.	ID=3694;Type=deletion;Left=chr2:33077966-33078346;Right=chr2:33080796-33081178
chr2	CG	SV	33080796	33081178	112	+	.	ID=3694;Type=deletion;Left=chr2:33077966-33078346;Right=chr2:33080796-33081178
chr2	CG	SV	33618082	33618766	41	.	.	ID=4025;Type=probable-inversion;Left=chr2:33618082-33618451+;Right=chr2:33618570-33618766-;Distance=684;DiscordantMatePairAlignments=41;LeftRepeat=;RightRepeat=;LeftGenes=NM_001139488:+;NM_015376:+;NM_170672:+;RightGenes=NM_001139488:+;NM_015376:+;NM_170672:+;XRef=;Frequency=0.10
chr2	CG	SV	33618082	33618451	41	+	.	ID=4025;Type=probable-inversion;Left=chr2:33618082-33618451;Right=chr2:33618570-33618766
chr2	CG	SV	33618570	33618766	41	+	.	ID=4025;Type=probable-inversion;Left=chr2:33618082-33618451;Right=chr2:33618570-33618766
chr2	CG	SV	34377160	34379539	50	.	.	ID=3693;Type=deletion;Left=chr2:34377160-34377544+;Right=chr2:34379225-34379539+;Distance=2065;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=L1PA6:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67806724 (chr2:34377158-34379223);Frequency=0.76
chr2	CG	SV	34377160	34377544	50	+	.	ID=3693;Type=deletion;Left=chr2:34377160-34377544;Right=chr2:34379225-34379539
chr2	CG	SV	34379225	34379539	50	+	.	ID=3693;Type=deletion;Left=chr2:34377160-34377544;Right=chr2:34379225-34379539
chr2	CG	SV	34819231	34821093	17	.	.	ID=3691;Type=deletion;Left=chr2:34819231-34819601+;Right=chr2:34820773-34821093+;Distance=1542;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr2	CG	SV	34819231	34819601	17	+	.	ID=3691;Type=deletion;Left=chr2:34819231-34819601;Right=chr2:34820773-34821093
chr2	CG	SV	34820773	34821093	17	+	.	ID=3691;Type=deletion;Left=chr2:34819231-34819601;Right=chr2:34820773-34821093
chr2	CG	SV	41629470	41635106	26	.	.	ID=3689;Type=deletion;Left=chr2:41629470-41629855+;Right=chr2:41634787-41635106+;Distance=5317;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=L1P5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66488562 (chr2:41629470-41634786);Frequency=0.47
chr2	CG	SV	41629470	41629855	26	+	.	ID=3689;Type=deletion;Left=chr2:41629470-41629855;Right=chr2:41634787-41635106
chr2	CG	SV	41634787	41635106	26	+	.	ID=3689;Type=deletion;Left=chr2:41629470-41629855;Right=chr2:41634787-41635106
chr2	CG	SV	41826660	41829772	30	.	.	ID=3688;Type=deletion;Left=chr2:41826660-41826990+;Right=chr2:41829384-41829772+;Distance=2724;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72393283 (chr2:41826645-41829369);Frequency=1.00
chr2	CG	SV	41826660	41826990	30	+	.	ID=3688;Type=deletion;Left=chr2:41826660-41826990;Right=chr2:41829384-41829772
chr2	CG	SV	41829384	41829772	30	+	.	ID=3688;Type=deletion;Left=chr2:41826660-41826990;Right=chr2:41829384-41829772
chr2	CG	SV	42199763	42201254	55	.	.	ID=3687;Type=deletion;Left=chr2:42199763-42200045+;Right=chr2:42200822-42201254+;Distance=1059;DiscordantMatePairAlignments=55;LeftRepeat=L1ME1:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr2	CG	SV	42199763	42200045	55	+	.	ID=3687;Type=deletion;Left=chr2:42199763-42200045;Right=chr2:42200822-42201254
chr2	CG	SV	42200822	42201254	55	+	.	ID=3687;Type=deletion;Left=chr2:42199763-42200045;Right=chr2:42200822-42201254
chr2	CG	SV	44337957	44345204	21	.	.	ID=3685;Type=deletion;Left=chr2:44337957-44338424+;Right=chr2:44345041-44345204+;Distance=7084;DiscordantMatePairAlignments=21;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	44337957	44338424	21	+	.	ID=3685;Type=deletion;Left=chr2:44337957-44338424;Right=chr2:44345041-44345204
chr2	CG	SV	44345041	44345204	21	+	.	ID=3685;Type=deletion;Left=chr2:44337957-44338424;Right=chr2:44345041-44345204
chr2	CG	SV	51078052	51079401	18	.	.	ID=3683;Type=deletion;Left=chr2:51078052-51078436+;Right=chr2:51079047-51079401+;Distance=995;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_001135659:-;NM_004801:-;RightGenes=NM_001135659:-;NM_004801:-;XRef=rs67948039 (chr2:51078051-51079046);Frequency=0.06
chr2	CG	SV	51078052	51078436	18	+	.	ID=3683;Type=deletion;Left=chr2:51078052-51078436;Right=chr2:51079047-51079401
chr2	CG	SV	51079047	51079401	18	+	.	ID=3683;Type=deletion;Left=chr2:51078052-51078436;Right=chr2:51079047-51079401
chr2	CG	SV	51780091	51781627	38	.	.	ID=3682;Type=deletion;Left=chr2:51780091-51780468+;Right=chr2:51781274-51781627+;Distance=1183;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr2	CG	SV	51780091	51780468	38	+	.	ID=3682;Type=deletion;Left=chr2:51780091-51780468;Right=chr2:51781274-51781627
chr2	CG	SV	51781274	51781627	38	+	.	ID=3682;Type=deletion;Left=chr2:51780091-51780468;Right=chr2:51781274-51781627
chr2	CG	SV	53626037	53631727	62	.	.	ID=3679;Type=deletion;Left=chr2:53626037-53626447+;Right=chr2:53631348-53631727+;Distance=5311;DiscordantMatePairAlignments=62;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	53626037	53626447	62	+	.	ID=3679;Type=deletion;Left=chr2:53626037-53626447;Right=chr2:53631348-53631727
chr2	CG	SV	53631348	53631727	62	+	.	ID=3679;Type=deletion;Left=chr2:53626037-53626447;Right=chr2:53631348-53631727
chr2	CG	SV	54418997	54421337	13	.	.	ID=3678;Type=deletion;Left=chr2:54418997-54419232+;Right=chr2:54420977-54421337+;Distance=1980;DiscordantMatePairAlignments=13;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_001100396:+;RightGenes=NM_001100396:+;XRef=rs66784896 (chr2:54419000-54420977);Frequency=0.94
chr2	CG	SV	54418997	54419232	13	+	.	ID=3678;Type=deletion;Left=chr2:54418997-54419232;Right=chr2:54420977-54421337
chr2	CG	SV	54420977	54421337	13	+	.	ID=3678;Type=deletion;Left=chr2:54418997-54419232;Right=chr2:54420977-54421337
chr2	CG	SV	61553907	61556958	44	.	.	ID=494;Type=probable-inversion;Left=chr2:61553907-61554258-;Right=chr2:61556447-61556958+;Distance=2189;DiscordantMatePairAlignments=44;LeftRepeat=AluJo:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr2	CG	SV	61553907	61554258	44	-	.	ID=494;Type=probable-inversion;Left=chr2:61553907-61554258;Right=chr2:61556447-61556958
chr2	CG	SV	61556447	61556958	44	-	.	ID=494;Type=probable-inversion;Left=chr2:61553907-61554258;Right=chr2:61556447-61556958
chr2	CG	SV	66359098	66361539	133	.	.	ID=3338;Type=deletion;Left=chr2:66359098-66359532+;Right=chr2:66361062-66361539+;Distance=1964;DiscordantMatePairAlignments=133;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs67498305 (chr2:66359098-66361062);Frequency=0.41
chr2	CG	SV	66359098	66359532	133	+	.	ID=3338;Type=deletion;Left=chr2:66359098-66359532;Right=chr2:66361062-66361539
chr2	CG	SV	66361062	66361539	133	+	.	ID=3338;Type=deletion;Left=chr2:66359098-66359532;Right=chr2:66361062-66361539
chr2	CG	SV	69978557	69979485	59	.	.	ID=3336;Type=deletion;Left=chr2:69978557-69978936+;Right=chr2:69978972-69979485+;Distance=415;DiscordantMatePairAlignments=59;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;LeftGenes=NM_006857:+;RightGenes=NM_006857:+;XRef=rs67525018 (chr2:69978548-69979069);Frequency=0.76
chr2	CG	SV	69978557	69978936	59	+	.	ID=3336;Type=deletion;Left=chr2:69978557-69978936;Right=chr2:69978972-69979485
chr2	CG	SV	69978972	69979485	59	+	.	ID=3336;Type=deletion;Left=chr2:69978557-69978936;Right=chr2:69978972-69979485
chr2	CG	SV	76380020	76382923	31	.	.	ID=3334;Type=deletion;Left=chr2:76380020-76380327+;Right=chr2:76382415-76382923+;Distance=2395;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68153335 (chr2:76380020-76382415);Frequency=1.00
chr2	CG	SV	76380020	76380327	31	+	.	ID=3334;Type=deletion;Left=chr2:76380020-76380327;Right=chr2:76382415-76382923
chr2	CG	SV	76382415	76382923	31	+	.	ID=3334;Type=deletion;Left=chr2:76380020-76380327;Right=chr2:76382415-76382923
chr2	CG	SV	77971399	77972246	60	.	.	ID=3333;Type=deletion;Left=chr2:77971399-77971838+;Right=chr2:77971866-77972246+;Distance=467;DiscordantMatePairAlignments=60;LeftRepeat=;RightRepeat=L1MA7:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72224379 (chr2:77971399-77971865);Frequency=0.47
chr2	CG	SV	77971399	77971838	60	+	.	ID=3333;Type=deletion;Left=chr2:77971399-77971838;Right=chr2:77971866-77972246
chr2	CG	SV	77971866	77972246	60	+	.	ID=3333;Type=deletion;Left=chr2:77971399-77971838;Right=chr2:77971866-77972246
chr2	CG	SV	79970580	80021758	59	.	.	ID=1248;Type=tandem-duplication;Left=chr2:79970580-79970949-;Right=chr2:80021377-80021758-;Distance=50809;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=;LeftGenes=NM_001164883:+;NM_004389:+;RightGenes=NM_001164883:+;NM_004389:+;XRef=;Frequency=0.00
chr2	CG	SV	79970580	79970949	59	-	.	ID=1248;Type=tandem-duplication;Left=chr2:79970580-79970949;Right=chr2:80021377-80021758
chr2	CG	SV	80021377	80021758	59	-	.	ID=1248;Type=tandem-duplication;Left=chr2:79970580-79970949;Right=chr2:80021377-80021758
chr2	CG	SV	82193972	82194730	11	.	.	ID=3331;Type=deletion;Left=chr2:82193972-82194384+;Right=chr2:82194292-82194730+;Distance=320;DiscordantMatePairAlignments=11;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67575719 (chr2:82193972-82194292);Frequency=0.94
chr2	CG	SV	82193972	82194384	11	+	.	ID=3331;Type=deletion;Left=chr2:82193972-82194384;Right=chr2:82194292-82194730
chr2	CG	SV	82194292	82194730	11	+	.	ID=3331;Type=deletion;Left=chr2:82193972-82194384;Right=chr2:82194292-82194730
chr2	CG	SV	88210798	88211268	11	.	.	ID=1247;Type=tandem-duplication;Left=chr2:88210798-88210880-;Right=chr2:88210878-88211268-;Distance=388;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr2	CG	SV	88210798	88210880	11	-	.	ID=1247;Type=tandem-duplication;Left=chr2:88210798-88210880;Right=chr2:88210878-88211268
chr2	CG	SV	88210878	88211268	11	-	.	ID=1247;Type=tandem-duplication;Left=chr2:88210798-88210880;Right=chr2:88210878-88211268
chr2	CG	SV	88810348	88813846	184	.	.	ID=3326;Type=deletion;Left=chr2:88810348-88810871+;Right=chr2:88813402-88813846+;Distance=3054;DiscordantMatePairAlignments=184;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_144563:+;RightGenes=NM_144563:+;XRef=rs72121102 (chr2:88810343-88813397);Frequency=1.00
chr2	CG	SV	88810348	88810871	184	+	.	ID=3326;Type=deletion;Left=chr2:88810348-88810871;Right=chr2:88813402-88813846
chr2	CG	SV	88813402	88813846	184	+	.	ID=3326;Type=deletion;Left=chr2:88810348-88810871;Right=chr2:88813402-88813846
chr2	CG	SV	91148225	91149150	10	.	.	ID=3323;Type=deletion;Left=chr2:91148225-91148595+;Right=chr2:91149003-91149150+;Distance=778;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=AluSq:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs6146841 (chr2:91148022-91148798);Frequency=0.94
chr2	CG	SV	91148225	91148595	10	+	.	ID=3323;Type=deletion;Left=chr2:91148225-91148595;Right=chr2:91149003-91149150
chr2	CG	SV	91149003	91149150	10	+	.	ID=3323;Type=deletion;Left=chr2:91148225-91148595;Right=chr2:91149003-91149150
chr2	CG	SV	94892318	94912088	45	.	.	ID=3319;Type=complex;Left=chr2:94892318-94892696+;Right=chr2:94911773-94912088+;Distance=19455;DiscordantMatePairAlignments=45;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr2	CG	SV	94892318	94892696	45	+	.	ID=3319;Type=complex;Left=chr2:94892318-94892696;Right=chr2:94911773-94912088
chr2	CG	SV	94911773	94912088	45	+	.	ID=3319;Type=complex;Left=chr2:94892318-94892696;Right=chr2:94911773-94912088
chr2	CG	SV	94912124	94913588	12	.	.	ID=3318;Type=complex;Left=chr2:94912124-94912449+;Right=chr2:94913229-94913588+;Distance=1105;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr2	CG	SV	94912124	94912449	12	+	.	ID=3318;Type=complex;Left=chr2:94912124-94912449;Right=chr2:94913229-94913588
chr2	CG	SV	94913229	94913588	12	+	.	ID=3318;Type=complex;Left=chr2:94912124-94912449;Right=chr2:94913229-94913588
chr2	CG	SV	101343610	101347159	14	.	.	ID=3314;Type=deletion;Left=chr2:101343610-101343999+;Right=chr2:101346945-101347159+;Distance=3335;DiscordantMatePairAlignments=14;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=MER20B:DNA:MER1_type;Self chain;LeftGenes=NM_153836:-;RightGenes=NM_153836:-;XRef=;Frequency=0.00
chr2	CG	SV	101343610	101343999	14	+	.	ID=3314;Type=deletion;Left=chr2:101343610-101343999;Right=chr2:101346945-101347159
chr2	CG	SV	101346945	101347159	14	+	.	ID=3314;Type=deletion;Left=chr2:101343610-101343999;Right=chr2:101346945-101347159
chr2	CG	SV	101464285	101464866	14	.	.	ID=3313;Type=deletion;Left=chr2:101464285-101464775+;Right=chr2:101464612-101464866+;Distance=327;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72121237 (chr2:101464270-101464597);Frequency=0.88
chr2	CG	SV	101464285	101464775	14	+	.	ID=3313;Type=deletion;Left=chr2:101464285-101464775;Right=chr2:101464612-101464866
chr2	CG	SV	101464612	101464866	14	+	.	ID=3313;Type=deletion;Left=chr2:101464285-101464775;Right=chr2:101464612-101464866
chr2	CG	SV	108676986	108678691	30	.	.	ID=3309;Type=deletion;Left=chr2:108676986-108677371+;Right=chr2:108678542-108678691+;Distance=1556;DiscordantMatePairAlignments=30;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L1MB7:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71831316 (chr2:108676746-108678213);Frequency=0.41
chr2	CG	SV	108676986	108677371	30	+	.	ID=3309;Type=deletion;Left=chr2:108676986-108677371;Right=chr2:108678542-108678691
chr2	CG	SV	108678542	108678691	30	+	.	ID=3309;Type=deletion;Left=chr2:108676986-108677371;Right=chr2:108678542-108678691
chr2	CG	SV	110210043	111169939	55	.	.	ID=3308;Type=deletion;Left=chr2:110210043-110210590+;Right=chr2:111169574-111169939+;Distance=959531;DiscordantMatePairAlignments=55;LeftRepeat=SegDup;Self chain;RightRepeat=LTR19B:LTR:ERV1;Self chain;LeftGenes=NM_005434:-;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	110210043	110210590	55	+	.	ID=3308;Type=deletion;Left=chr2:110210043-110210590;Right=chr2:111169574-111169939
chr2	CG	SV	111169574	111169939	55	+	.	ID=3308;Type=deletion;Left=chr2:110210043-110210590;Right=chr2:111169574-111169939
chr2	CG	SV	116694769	116698777	43	.	.	ID=3983;Type=probable-inversion;Left=chr2:116694769-116695168+;Right=chr2:116698375-116698777-;Distance=4008;DiscordantMatePairAlignments=43;LeftRepeat=L1M4c:LINE:L1;RightRepeat=L1M4c:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr2	CG	SV	116694769	116695168	43	+	.	ID=3983;Type=probable-inversion;Left=chr2:116694769-116695168;Right=chr2:116698375-116698777
chr2	CG	SV	116698375	116698777	43	+	.	ID=3983;Type=probable-inversion;Left=chr2:116694769-116695168;Right=chr2:116698375-116698777
chr2	CG	SV	119762084	119767407	52	.	.	ID=3302;Type=deletion;Left=chr2:119762084-119762445+;Right=chr2:119767011-119767407+;Distance=4927;DiscordantMatePairAlignments=52;LeftRepeat=L1ME2:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	119762084	119762445	52	+	.	ID=3302;Type=deletion;Left=chr2:119762084-119762445;Right=chr2:119767011-119767407
chr2	CG	SV	119767011	119767407	52	+	.	ID=3302;Type=deletion;Left=chr2:119762084-119762445;Right=chr2:119767011-119767407
chr2	CG	SV	119998868	119999614	157	.	.	ID=1203;Type=tandem-duplication;Left=chr2:119998868-119999252-;Right=chr2:119999303-119999614-;Distance=362;DiscordantMatePairAlignments=157;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr2	CG	SV	119998868	119999252	157	-	.	ID=1203;Type=tandem-duplication;Left=chr2:119998868-119999252;Right=chr2:119999303-119999614
chr2	CG	SV	119999303	119999614	157	-	.	ID=1203;Type=tandem-duplication;Left=chr2:119998868-119999252;Right=chr2:119999303-119999614
chr2	CG	SV	120133426	120134958	45	.	.	ID=1202;Type=distal-duplication;Left=chr2:120133426-120133549-;Right=chr2:120134510-120134958-;Distance=1409;DiscordantMatePairAlignments=45;LeftRepeat=L1MC4a:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	120133426	120133549	45	-	.	ID=1202;Type=distal-duplication;Left=chr2:120133426-120133549;Right=chr2:120134510-120134958
chr2	CG	SV	120134510	120134958	45	-	.	ID=1202;Type=distal-duplication;Left=chr2:120133426-120133549;Right=chr2:120134510-120134958
chr2	CG	SV	120133670	120135431	25	.	.	ID=3301;Type=distal-duplication;Left=chr2:120133670-120133794+;Right=chr2:120134968-120135431+;Distance=1298;DiscordantMatePairAlignments=25;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72020679 (chr2:120133667-120134965);Frequency=0.94
chr2	CG	SV	120133670	120133794	25	+	.	ID=3301;Type=distal-duplication;Left=chr2:120133670-120133794;Right=chr2:120134968-120135431
chr2	CG	SV	120134968	120135431	25	+	.	ID=3301;Type=distal-duplication;Left=chr2:120133670-120133794;Right=chr2:120134968-120135431
chr2	CG	SV	123081348	123082303	91	.	.	ID=3300;Type=deletion;Left=chr2:123081348-123081677+;Right=chr2:123081846-123082303+;Distance=498;DiscordantMatePairAlignments=91;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr2	CG	SV	123081348	123081677	91	+	.	ID=3300;Type=deletion;Left=chr2:123081348-123081677;Right=chr2:123081846-123082303
chr2	CG	SV	123081846	123082303	91	+	.	ID=3300;Type=deletion;Left=chr2:123081348-123081677;Right=chr2:123081846-123082303
chr2	CG	SV	124768226	124769710	55	.	.	ID=3982;Type=probable-inversion;Left=chr2:124768226-124768727+;Right=chr2:124769386-124769710-;Distance=1484;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=MER41B:LTR:ERV1;LeftGenes=NM_130773:+;RightGenes=NM_130773:+;XRef=;Frequency=0.82
chr2	CG	SV	124768226	124768727	55	+	.	ID=3982;Type=probable-inversion;Left=chr2:124768226-124768727;Right=chr2:124769386-124769710
chr2	CG	SV	124769386	124769710	55	+	.	ID=3982;Type=probable-inversion;Left=chr2:124768226-124768727;Right=chr2:124769386-124769710
chr2	CG	SV	125483031	125484867	34	.	.	ID=3299;Type=distal-duplication;Left=chr2:125483031-125483364+;Right=chr2:125484718-125484867+;Distance=1687;DiscordantMatePairAlignments=34;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr2	CG	SV	125483031	125483364	34	+	.	ID=3299;Type=distal-duplication;Left=chr2:125483031-125483364;Right=chr2:125484718-125484867
chr2	CG	SV	125484718	125484867	34	+	.	ID=3299;Type=distal-duplication;Left=chr2:125483031-125483364;Right=chr2:125484718-125484867
chr2	CG	SV	125482512	125484871	38	.	.	ID=1201;Type=distal-duplication;Left=chr2:125482512-125483031-;Right=chr2:125484720-125484871-;Distance=1840;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr2	CG	SV	125482512	125483031	38	-	.	ID=1201;Type=distal-duplication;Left=chr2:125482512-125483031;Right=chr2:125484720-125484871
chr2	CG	SV	125484720	125484871	38	-	.	ID=1201;Type=distal-duplication;Left=chr2:125482512-125483031;Right=chr2:125484720-125484871
chr2	CG	SV	126159721	126168681	107	.	.	ID=3298;Type=deletion;Left=chr2:126159721-126160127+;Right=chr2:126168305-126168681+;Distance=8584;DiscordantMatePairAlignments=107;LeftRepeat=L1MD1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66740069 (chr2:126159717-126168301);Frequency=0.88
chr2	CG	SV	126159721	126160127	107	+	.	ID=3298;Type=deletion;Left=chr2:126159721-126160127;Right=chr2:126168305-126168681
chr2	CG	SV	126168305	126168681	107	+	.	ID=3298;Type=deletion;Left=chr2:126159721-126160127;Right=chr2:126168305-126168681
chr2	CG	SV	127391228	127394214	138	.	.	ID=3297;Type=deletion;Left=chr2:127391228-127391779+;Right=chr2:127393744-127394214+;Distance=2516;DiscordantMatePairAlignments=138;LeftRepeat=;RightRepeat=L1MEd:LINE:L1;LeftGenes=;RightGenes=;XRef=rs74164329 (chr2:127391228-127393744);Frequency=1.00
chr2	CG	SV	127391228	127391779	138	+	.	ID=3297;Type=deletion;Left=chr2:127391228-127391779;Right=chr2:127393744-127394214
chr2	CG	SV	127393744	127394214	138	+	.	ID=3297;Type=deletion;Left=chr2:127391228-127391779;Right=chr2:127393744-127394214
chr2	CG	SV	131603369	131603562	31	.	.	ID=3981;Type=probable-inversion;Left=chr2:131603369-131603695+;Right=chr2:131603410-131603562-;Distance=193;DiscordantMatePairAlignments=31;LeftRepeat=AluSx:SINE:Alu;Self chain;Tandem A;RightRepeat=AluSq:SINE:Alu;Self chain;LeftGenes=NM_001100623:+;NM_017958:+;RightGenes=NM_001100623:+;NM_017958:+;XRef=;Frequency=0.94
chr2	CG	SV	131603369	131603695	31	+	.	ID=3981;Type=probable-inversion;Left=chr2:131603369-131603695;Right=chr2:131603410-131603562
chr2	CG	SV	131603410	131603562	31	+	.	ID=3981;Type=probable-inversion;Left=chr2:131603369-131603695;Right=chr2:131603410-131603562
chr2	CG	SV	132733902	132735612	934	.	.	ID=3296;Type=deletion;Left=chr2:132733902-132734302+;Right=chr2:132735177-132735612+;Distance=1275;DiscordantMatePairAlignments=934;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs72407802 (chr2:132733904-132735114);Frequency=1.00
chr2	CG	SV	132733902	132734302	934	+	.	ID=3296;Type=deletion;Left=chr2:132733902-132734302;Right=chr2:132735177-132735612
chr2	CG	SV	132735177	132735612	934	+	.	ID=3296;Type=deletion;Left=chr2:132733902-132734302;Right=chr2:132735177-132735612
chr2	CG	SV	132736921	132737326	92	+	.	ID=3794;Type=complex;Left=chr2:132736921-132737326+;Right=chr17:42569527-42569727-;Distance=;DiscordantMatePairAlignments=92;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=0.00
chr17	CG	SV	42569527	42569727	92	+	.	ID=3794;Type=complex;Left=chr2:132736921-132737326+;Right=chr17:42569527-42569727-;Distance=;DiscordantMatePairAlignments=92;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=0.00
chr2	CG	SV	132742797	132747162	330	.	.	ID=1199;Type=complex;Left=chr2:132742797-132743136-;Right=chr2:132746878-132747162-;Distance=4026;DiscordantMatePairAlignments=330;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	132742797	132743136	330	-	.	ID=1199;Type=complex;Left=chr2:132742797-132743136;Right=chr2:132746878-132747162
chr2	CG	SV	132746878	132747162	330	-	.	ID=1199;Type=complex;Left=chr2:132742797-132743136;Right=chr2:132746878-132747162
chr2	CG	SV	132747163	132747446	84	+	.	ID=2832;Type=complex;Left=chr2:132747163-132747446+;Right=chr12:36734988-36735174+;Distance=;DiscordantMatePairAlignments=84;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	36734988	36735174	84	+	.	ID=2832;Type=complex;Left=chr2:132747163-132747446+;Right=chr12:36734988-36735174+;Distance=;DiscordantMatePairAlignments=84;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	132747163	132747448	313	+	.	ID=3670;Type=complex;Left=chr2:132747163-132747448+;Right=chr16:33863146-33863532-;Distance=;DiscordantMatePairAlignments=313;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	33863146	33863532	313	+	.	ID=3670;Type=complex;Left=chr2:132747163-132747448+;Right=chr16:33863146-33863532-;Distance=;DiscordantMatePairAlignments=313;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	134683179	134687094	153	.	.	ID=3292;Type=deletion;Left=chr2:134683179-134683697+;Right=chr2:134686609-134687094+;Distance=3430;DiscordantMatePairAlignments=153;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67845770 (chr2:134683170-134686600);Frequency=0.94
chr2	CG	SV	134683179	134683697	153	+	.	ID=3292;Type=deletion;Left=chr2:134683179-134683697;Right=chr2:134686609-134687094
chr2	CG	SV	134686609	134687094	153	+	.	ID=3292;Type=deletion;Left=chr2:134683179-134683697;Right=chr2:134686609-134687094
chr2	CG	SV	141530911	141536283	33	.	.	ID=3223;Type=deletion;Left=chr2:141530911-141531331+;Right=chr2:141535899-141536283+;Distance=4988;DiscordantMatePairAlignments=33;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_018557:-;RightGenes=NM_018557:-;XRef=;Frequency=0.00
chr2	CG	SV	141530911	141531331	33	+	.	ID=3223;Type=deletion;Left=chr2:141530911-141531331;Right=chr2:141535899-141536283
chr2	CG	SV	141535899	141536283	33	+	.	ID=3223;Type=deletion;Left=chr2:141530911-141531331;Right=chr2:141535899-141536283
chr2	CG	SV	146579091	146593727	97	.	.	ID=3219;Type=deletion;Left=chr2:146579091-146579511+;Right=chr2:146593334-146593727+;Distance=14243;DiscordantMatePairAlignments=97;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=MLT1H-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr2	CG	SV	146579091	146579511	97	+	.	ID=3219;Type=deletion;Left=chr2:146579091-146579511;Right=chr2:146593334-146593727
chr2	CG	SV	146593334	146593727	97	+	.	ID=3219;Type=deletion;Left=chr2:146579091-146579511;Right=chr2:146593334-146593727
chr2	CG	SV	152325547	152326308	10	.	.	ID=3216;Type=deletion;Left=chr2:152325547-152325979+;Right=chr2:152325862-152326308+;Distance=315;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10528463 (chr2:152325547-152325862);Frequency=0.94
chr2	CG	SV	152325547	152325979	10	+	.	ID=3216;Type=deletion;Left=chr2:152325547-152325979;Right=chr2:152325862-152326308
chr2	CG	SV	152325862	152326308	10	+	.	ID=3216;Type=deletion;Left=chr2:152325547-152325979;Right=chr2:152325862-152326308
chr2	CG	SV	153168162	153169680	17	.	.	ID=3978;Type=complex;Left=chr2:153168162-153168570+;Right=chr2:153169338-153169680-;Distance=1518;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=;LeftGenes=NM_052905:+;RightGenes=NM_052905:+;XRef=;Frequency=0.29
chr2	CG	SV	153168162	153168570	17	+	.	ID=3978;Type=complex;Left=chr2:153168162-153168570;Right=chr2:153169338-153169680
chr2	CG	SV	153169338	153169680	17	+	.	ID=3978;Type=complex;Left=chr2:153168162-153168570;Right=chr2:153169338-153169680
chr2	CG	SV	153168165	153169852	10	.	.	ID=3215;Type=complex;Left=chr2:153168165-153168264+;Right=chr2:153169692-153169852+;Distance=1527;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=NM_052905:+;RightGenes=NM_052905:+;XRef=;Frequency=0.29
chr2	CG	SV	153168165	153168264	10	+	.	ID=3215;Type=complex;Left=chr2:153168165-153168264;Right=chr2:153169692-153169852
chr2	CG	SV	153169692	153169852	10	+	.	ID=3215;Type=complex;Left=chr2:153168165-153168264;Right=chr2:153169692-153169852
chr2	CG	SV	153169001	153170052	16	.	.	ID=459;Type=complex;Left=chr2:153169001-153169341-;Right=chr2:153169694-153170052+;Distance=353;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=;LeftGenes=NM_052905:+;RightGenes=NM_052905:+;XRef=;Frequency=0.29
chr2	CG	SV	153169001	153169341	16	-	.	ID=459;Type=complex;Left=chr2:153169001-153169341;Right=chr2:153169694-153170052
chr2	CG	SV	153169694	153170052	16	-	.	ID=459;Type=complex;Left=chr2:153169001-153169341;Right=chr2:153169694-153170052
chr2	CG	SV	153504241	153508301	31	.	.	ID=3214;Type=deletion;Left=chr2:153504241-153504640+;Right=chr2:153507989-153508301+;Distance=3748;DiscordantMatePairAlignments=31;LeftRepeat=L1PA14:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr2	CG	SV	153504241	153504640	31	+	.	ID=3214;Type=deletion;Left=chr2:153504241-153504640;Right=chr2:153507989-153508301
chr2	CG	SV	153507989	153508301	31	+	.	ID=3214;Type=deletion;Left=chr2:153504241-153504640;Right=chr2:153507989-153508301
chr2	CG	SV	159857366	159860112	119	.	.	ID=3212;Type=deletion;Left=chr2:159857366-159857883+;Right=chr2:159859897-159860112+;Distance=2531;DiscordantMatePairAlignments=119;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66496159 (chr2:159857363-159859894);Frequency=1.00
chr2	CG	SV	159857366	159857883	119	+	.	ID=3212;Type=deletion;Left=chr2:159857366-159857883;Right=chr2:159859897-159860112
chr2	CG	SV	159859897	159860112	119	+	.	ID=3212;Type=deletion;Left=chr2:159857366-159857883;Right=chr2:159859897-159860112
chr2	CG	SV	161503856	161504613	13	.	.	ID=3210;Type=deletion;Left=chr2:161503856-161504337+;Right=chr2:161504180-161504613+;Distance=324;DiscordantMatePairAlignments=13;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67778032 (chr2:161503846-161504170);Frequency=1.00
chr2	CG	SV	161503856	161504337	13	+	.	ID=3210;Type=deletion;Left=chr2:161503856-161504337;Right=chr2:161504180-161504613
chr2	CG	SV	161504180	161504613	13	+	.	ID=3210;Type=deletion;Left=chr2:161503856-161504337;Right=chr2:161504180-161504613
chr2	CG	SV	176054920	176061382	79	.	.	ID=3204;Type=deletion;Left=chr2:176054920-176055380+;Right=chr2:176060973-176061382+;Distance=6053;DiscordantMatePairAlignments=79;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68056211 (chr2:176054914-176060967);Frequency=0.35
chr2	CG	SV	176054920	176055380	79	+	.	ID=3204;Type=deletion;Left=chr2:176054920-176055380;Right=chr2:176060973-176061382
chr2	CG	SV	176060973	176061382	79	+	.	ID=3204;Type=deletion;Left=chr2:176054920-176055380;Right=chr2:176060973-176061382
chr2	CG	SV	176973891	176980787	51	.	.	ID=3203;Type=deletion;Left=chr2:176973891-176974189+;Right=chr2:176980290-176980787+;Distance=6399;DiscordantMatePairAlignments=51;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72292246 (chr2:176973887-176980286);Frequency=0.82
chr2	CG	SV	176973891	176974189	51	+	.	ID=3203;Type=deletion;Left=chr2:176973891-176974189;Right=chr2:176980290-176980787
chr2	CG	SV	176980290	176980787	51	+	.	ID=3203;Type=deletion;Left=chr2:176973891-176974189;Right=chr2:176980290-176980787
chr2	CG	SV	177081925	177094907	23	.	.	ID=3977;Type=complex;Left=chr2:177081925-177082244+;Right=chr2:177094619-177094907-;Distance=12982;DiscordantMatePairAlignments=23;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	177081925	177082244	23	+	.	ID=3977;Type=complex;Left=chr2:177081925-177082244;Right=chr2:177094619-177094907
chr2	CG	SV	177094619	177094907	23	+	.	ID=3977;Type=complex;Left=chr2:177081925-177082244;Right=chr2:177094619-177094907
chr2	CG	SV	177085285	177094507	30	.	.	ID=458;Type=complex;Left=chr2:177085285-177085681-;Right=chr2:177094247-177094507+;Distance=8566;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	177085285	177085681	30	-	.	ID=458;Type=complex;Left=chr2:177085285-177085681;Right=chr2:177094247-177094507
chr2	CG	SV	177094247	177094507	30	-	.	ID=458;Type=complex;Left=chr2:177085285-177085681;Right=chr2:177094247-177094507
chr2	CG	SV	177995883	177996672	29	.	.	ID=3202;Type=deletion;Left=chr2:177995883-177996359+;Right=chr2:177996307-177996672+;Distance=424;DiscordantMatePairAlignments=29;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_003659:+;RightGenes=NM_003659:+;XRef=rs67480529 (chr2:177995883-177996297);Frequency=1.00
chr2	CG	SV	177995883	177996359	29	+	.	ID=3202;Type=deletion;Left=chr2:177995883-177996359;Right=chr2:177996307-177996672
chr2	CG	SV	177996307	177996672	29	+	.	ID=3202;Type=deletion;Left=chr2:177995883-177996359;Right=chr2:177996307-177996672
chr2	CG	SV	182064228	182064959	11	.	.	ID=3200;Type=deletion;Left=chr2:182064228-182064617+;Right=chr2:182064543-182064959+;Distance=315;DiscordantMatePairAlignments=11;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=;LeftGenes=NM_000885:+;RightGenes=NM_000885:+;XRef=rs66936328 (chr2:182064228-182064543);Frequency=1.00
chr2	CG	SV	182064228	182064617	11	+	.	ID=3200;Type=deletion;Left=chr2:182064228-182064617;Right=chr2:182064543-182064959
chr2	CG	SV	182064543	182064959	11	+	.	ID=3200;Type=deletion;Left=chr2:182064228-182064617;Right=chr2:182064543-182064959
chr2	CG	SV	182273509	182274156	21	.	.	ID=3199;Type=deletion;Left=chr2:182273509-182273980+;Right=chr2:182273837-182274156+;Distance=328;DiscordantMatePairAlignments=21;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67398526 (chr2:182273485-182273813);Frequency=1.00
chr2	CG	SV	182273509	182273980	21	+	.	ID=3199;Type=deletion;Left=chr2:182273509-182273980;Right=chr2:182273837-182274156
chr2	CG	SV	182273837	182274156	21	+	.	ID=3199;Type=deletion;Left=chr2:182273509-182273980;Right=chr2:182273837-182274156
chr2	CG	SV	183958226	183958880	22	.	.	ID=3196;Type=deletion;Left=chr2:183958226-183958740+;Right=chr2:183958569-183958880+;Distance=343;DiscordantMatePairAlignments=22;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68117218 (chr2:183958211-183958554);Frequency=1.00
chr2	CG	SV	183958226	183958740	22	+	.	ID=3196;Type=deletion;Left=chr2:183958226-183958740;Right=chr2:183958569-183958880
chr2	CG	SV	183958569	183958880	22	+	.	ID=3196;Type=deletion;Left=chr2:183958226-183958740;Right=chr2:183958569-183958880
chr2	CG	SV	184039525	184045815	34	.	.	ID=1195;Type=tandem-duplication;Left=chr2:184039525-184040004-;Right=chr2:184045479-184045815-;Distance=5811;DiscordantMatePairAlignments=34;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	184039525	184040004	34	-	.	ID=1195;Type=tandem-duplication;Left=chr2:184039525-184040004;Right=chr2:184045479-184045815
chr2	CG	SV	184045479	184045815	34	-	.	ID=1195;Type=tandem-duplication;Left=chr2:184039525-184040004;Right=chr2:184045479-184045815
chr2	CG	SV	187923975	187924723	10	.	.	ID=3195;Type=deletion;Left=chr2:187923975-187924358+;Right=chr2:187924282-187924723+;Distance=307;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_005795:-;RightGenes=NM_005795:-;XRef=rs67050793 (chr2:187923975-187924282);Frequency=1.00
chr2	CG	SV	187923975	187924358	10	+	.	ID=3195;Type=deletion;Left=chr2:187923975-187924358;Right=chr2:187924282-187924723
chr2	CG	SV	187924282	187924723	10	+	.	ID=3195;Type=deletion;Left=chr2:187923975-187924358;Right=chr2:187924282-187924723
chr2	CG	SV	188827864	188829573	18	.	.	ID=3194;Type=deletion;Left=chr2:188827864-188828192+;Right=chr2:188829227-188829573+;Distance=1363;DiscordantMatePairAlignments=18;LeftRepeat=L1ME1:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr2	CG	SV	188827864	188828192	18	+	.	ID=3194;Type=deletion;Left=chr2:188827864-188828192;Right=chr2:188829227-188829573
chr2	CG	SV	188829227	188829573	18	+	.	ID=3194;Type=deletion;Left=chr2:188827864-188828192;Right=chr2:188829227-188829573
chr2	CG	SV	195923061	195923819	12	.	.	ID=3192;Type=deletion;Left=chr2:195923061-195923431+;Right=chr2:195923473-195923819+;Distance=412;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs74164370 (chr2:195923061-195923473);Frequency=0.94
chr2	CG	SV	195923061	195923431	12	+	.	ID=3192;Type=deletion;Left=chr2:195923061-195923431;Right=chr2:195923473-195923819
chr2	CG	SV	195923473	195923819	12	+	.	ID=3192;Type=deletion;Left=chr2:195923061-195923431;Right=chr2:195923473-195923819
chr2	CG	SV	201854903	201858161	111	.	.	ID=3191;Type=deletion;Left=chr2:201854903-201855285+;Right=chr2:201857695-201858161+;Distance=2792;DiscordantMatePairAlignments=111;LeftRepeat=SVA:Other:Other;RightRepeat=;LeftGenes=NM_001080124:+;NM_001080125:+;NM_001228:+;NM_033355:+;NM_033356:+;RightGenes=NM_001080124:+;NM_001080125:+;NM_001228:+;NM_033355:+;NM_033356:+;XRef=rs66663250 (chr2:201854893-201857685);Frequency=0.71
chr2	CG	SV	201854903	201855285	111	+	.	ID=3191;Type=deletion;Left=chr2:201854903-201855285;Right=chr2:201857695-201858161
chr2	CG	SV	201857695	201858161	111	+	.	ID=3191;Type=deletion;Left=chr2:201854903-201855285;Right=chr2:201857695-201858161
chr2	CG	SV	206439444	206440201	33	.	.	ID=3188;Type=deletion;Left=chr2:206439444-206439857+;Right=chr2:206439767-206440201+;Distance=323;DiscordantMatePairAlignments=33;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6147135 (chr2:206439444-206439767);Frequency=1.00
chr2	CG	SV	206439444	206439857	33	+	.	ID=3188;Type=deletion;Left=chr2:206439444-206439857;Right=chr2:206439767-206440201
chr2	CG	SV	206439767	206440201	33	+	.	ID=3188;Type=deletion;Left=chr2:206439444-206439857;Right=chr2:206439767-206440201
chr2	CG	SV	208182732	208185448	10	.	.	ID=3186;Type=deletion;Left=chr2:208182732-208183147+;Right=chr2:208185034-208185448+;Distance=2302;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001127395:-;NM_145280:-;RightGenes=NM_001127395:-;NM_145280:-;XRef=rs71844665 (chr2:208182727-208185029);Frequency=1.00
chr2	CG	SV	208182732	208183147	10	+	.	ID=3186;Type=deletion;Left=chr2:208182732-208183147;Right=chr2:208185034-208185448
chr2	CG	SV	208185034	208185448	10	+	.	ID=3186;Type=deletion;Left=chr2:208182732-208183147;Right=chr2:208185034-208185448
chr2	CG	SV	208798531	208806068	36	.	.	ID=3183;Type=deletion;Left=chr2:208798531-208798977+;Right=chr2:208805688-208806068+;Distance=7157;DiscordantMatePairAlignments=36;LeftRepeat=AluSq:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	208798531	208798977	36	+	.	ID=3183;Type=deletion;Left=chr2:208798531-208798977;Right=chr2:208805688-208806068
chr2	CG	SV	208805688	208806068	36	+	.	ID=3183;Type=deletion;Left=chr2:208798531-208798977;Right=chr2:208805688-208806068
chr2	CG	SV	216798181	216800896	38	.	.	ID=3180;Type=deletion;Left=chr2:216798181-216798645+;Right=chr2:216800749-216800896+;Distance=2568;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67871446 (chr2:216798175-216800743);Frequency=1.00
chr2	CG	SV	216798181	216798645	38	+	.	ID=3180;Type=deletion;Left=chr2:216798181-216798645;Right=chr2:216800749-216800896
chr2	CG	SV	216800749	216800896	38	+	.	ID=3180;Type=deletion;Left=chr2:216798181-216798645;Right=chr2:216800749-216800896
chr2	CG	SV	221793995	221798258	61	.	.	ID=3176;Type=deletion;Left=chr2:221793995-221794352+;Right=chr2:221797856-221798258+;Distance=3861;DiscordantMatePairAlignments=61;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	221793995	221794352	61	+	.	ID=3176;Type=deletion;Left=chr2:221793995-221794352;Right=chr2:221797856-221798258
chr2	CG	SV	221797856	221798258	61	+	.	ID=3176;Type=deletion;Left=chr2:221793995-221794352;Right=chr2:221797856-221798258
chr2	CG	SV	223468428	223471432	81	.	.	ID=3175;Type=deletion;Left=chr2:223468428-223468828+;Right=chr2:223470921-223471432+;Distance=2493;DiscordantMatePairAlignments=81;LeftRepeat=;RightRepeat=;LeftGenes=NM_004457:+;NM_203372:+;RightGenes=NM_004457:+;NM_203372:+;XRef=rs67796571 (chr2:223468435-223470928);Frequency=0.94
chr2	CG	SV	223468428	223468828	81	+	.	ID=3175;Type=deletion;Left=chr2:223468428-223468828;Right=chr2:223470921-223471432
chr2	CG	SV	223470921	223471432	81	+	.	ID=3175;Type=deletion;Left=chr2:223468428-223468828;Right=chr2:223470921-223471432
chr2	CG	SV	225747827	225748710	118	.	.	ID=3174;Type=deletion;Left=chr2:225747827-225748238+;Right=chr2:225748304-225748710+;Distance=477;DiscordantMatePairAlignments=118;LeftRepeat=Self chain;RightRepeat=Alu:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	225747827	225748238	118	+	.	ID=3174;Type=deletion;Left=chr2:225747827-225748238;Right=chr2:225748304-225748710
chr2	CG	SV	225748304	225748710	118	+	.	ID=3174;Type=deletion;Left=chr2:225747827-225748238;Right=chr2:225748304-225748710
chr2	CG	SV	237596582	237612295	40	.	.	ID=3168;Type=deletion;Left=chr2:237596582-237596936+;Right=chr2:237611957-237612295+;Distance=15375;DiscordantMatePairAlignments=40;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	237596582	237596936	40	+	.	ID=3168;Type=deletion;Left=chr2:237596582-237596936;Right=chr2:237611957-237612295
chr2	CG	SV	237611957	237612295	40	+	.	ID=3168;Type=deletion;Left=chr2:237596582-237596936;Right=chr2:237611957-237612295
chr2	CG	SV	239732680	239749389	47	.	.	ID=3976;Type=probable-inversion;Left=chr2:239732680-239733145+;Right=chr2:239749050-239749389-;Distance=16709;DiscordantMatePairAlignments=47;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_006037:-;RightGenes=NM_006037:-;XRef=;Frequency=0.00
chr2	CG	SV	239732680	239733145	47	+	.	ID=3976;Type=probable-inversion;Left=chr2:239732680-239733145;Right=chr2:239749050-239749389
chr2	CG	SV	239749050	239749389	47	+	.	ID=3976;Type=probable-inversion;Left=chr2:239732680-239733145;Right=chr2:239749050-239749389
chr2	CG	SV	240607627	240608431	10	.	.	ID=3166;Type=deletion;Left=chr2:240607627-240608062+;Right=chr2:240607949-240608431+;Distance=322;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_004544:-;RightGenes=NM_004544:-;XRef=rs10705194 (chr2:240607627-240607949);Frequency=0.82
chr2	CG	SV	240607627	240608062	10	+	.	ID=3166;Type=deletion;Left=chr2:240607627-240608062;Right=chr2:240607949-240608431
chr2	CG	SV	240607949	240608431	10	+	.	ID=3166;Type=deletion;Left=chr2:240607627-240608062;Right=chr2:240607949-240608431
chr2	CG	SV	242154776	242156241	46	.	.	ID=3163;Type=deletion;Left=chr2:242154776-242155199+;Right=chr2:242156007-242156241+;Distance=1231;DiscordantMatePairAlignments=46;LeftRepeat=Self chain;RightRepeat=L1MB5:LINE:L1;Self chain;LeftGenes=NM_032515:+;RightGenes=NM_032515:+;XRef=rs72482950 (chr2:242154674-242155799);Frequency=0.45
chr2	CG	SV	242154776	242155199	46	+	.	ID=3163;Type=deletion;Left=chr2:242154776-242155199;Right=chr2:242156007-242156241
chr2	CG	SV	242156007	242156241	46	+	.	ID=3163;Type=deletion;Left=chr2:242154776-242155199;Right=chr2:242156007-242156241
chr3	CG	SV	2286589	2287360	12	.	.	ID=3159;Type=deletion;Left=chr3:2286589-2287023+;Right=chr3:2286937-2287360+;Distance=348;DiscordantMatePairAlignments=12;LeftRepeat=AluYb9:SINE:Alu;RightRepeat=L1PA15:LINE:L1;LeftGenes=NM_175607:+;RightGenes=NM_175607:+;XRef=rs72410237 (chr3:2286586-2286934);Frequency=0.88
chr3	CG	SV	2286589	2287023	12	+	.	ID=3159;Type=deletion;Left=chr3:2286589-2287023;Right=chr3:2286937-2287360
chr3	CG	SV	2286937	2287360	12	+	.	ID=3159;Type=deletion;Left=chr3:2286589-2287023;Right=chr3:2286937-2287360
chr3	CG	SV	3197858	3557169	27	.	.	ID=1187;Type=tandem-duplication;Left=chr3:3197858-3198211-;Right=chr3:3556749-3557169-;Distance=358958;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=MIR3:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	3197858	3198211	27	-	.	ID=1187;Type=tandem-duplication;Left=chr3:3197858-3198211;Right=chr3:3556749-3557169
chr3	CG	SV	3556749	3557169	27	-	.	ID=1187;Type=tandem-duplication;Left=chr3:3197858-3198211;Right=chr3:3556749-3557169
chr3	CG	SV	8300639	8302181	47	.	.	ID=3155;Type=deletion;Left=chr3:8300639-8301043+;Right=chr3:8301812-8302181+;Distance=1173;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71052654 (chr3:8300639-8301812);Frequency=0.59
chr3	CG	SV	8300639	8301043	47	+	.	ID=3155;Type=deletion;Left=chr3:8300639-8301043;Right=chr3:8301812-8302181
chr3	CG	SV	8301812	8302181	47	+	.	ID=3155;Type=deletion;Left=chr3:8300639-8301043;Right=chr3:8301812-8302181
chr3	CG	SV	10372475	10373233	70	.	.	ID=3152;Type=deletion;Left=chr3:10372475-10372952+;Right=chr3:10372824-10373233+;Distance=349;DiscordantMatePairAlignments=70;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_001001331:-;NM_001683:-;RightGenes=NM_001001331:-;NM_001683:-;XRef=;Frequency=1.00
chr3	CG	SV	10372475	10372952	70	+	.	ID=3152;Type=deletion;Left=chr3:10372475-10372952;Right=chr3:10372824-10373233
chr3	CG	SV	10372824	10373233	70	+	.	ID=3152;Type=deletion;Left=chr3:10372475-10372952;Right=chr3:10372824-10373233
chr3	CG	SV	21432512	21433209	17	.	.	ID=3148;Type=deletion;Left=chr3:21432512-21432956+;Right=chr3:21432835-21433209+;Distance=323;DiscordantMatePairAlignments=17;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67452587 (chr3:21432512-21432835);Frequency=0.88
chr3	CG	SV	21432512	21432956	17	+	.	ID=3148;Type=deletion;Left=chr3:21432512-21432956;Right=chr3:21432835-21433209
chr3	CG	SV	21432835	21433209	17	+	.	ID=3148;Type=deletion;Left=chr3:21432512-21432956;Right=chr3:21432835-21433209
chr3	CG	SV	22067357	22073195	55	.	.	ID=3147;Type=deletion;Left=chr3:22067357-22067766+;Right=chr3:22072805-22073195+;Distance=5448;DiscordantMatePairAlignments=55;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66720172 (chr3:22067351-22072799);Frequency=0.88
chr3	CG	SV	22067357	22067766	55	+	.	ID=3147;Type=deletion;Left=chr3:22067357-22067766;Right=chr3:22072805-22073195
chr3	CG	SV	22072805	22073195	55	+	.	ID=3147;Type=deletion;Left=chr3:22067357-22067766;Right=chr3:22072805-22073195
chr3	CG	SV	23739077	23739860	15	.	.	ID=3146;Type=deletion;Left=chr3:23739077-23739424+;Right=chr3:23739407-23739860+;Distance=330;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10705792 (chr3:23739077-23739407);Frequency=0.65
chr3	CG	SV	23739077	23739424	15	+	.	ID=3146;Type=deletion;Left=chr3:23739077-23739424;Right=chr3:23739407-23739860
chr3	CG	SV	23739407	23739860	15	+	.	ID=3146;Type=deletion;Left=chr3:23739077-23739424;Right=chr3:23739407-23739860
chr3	CG	SV	25005891	25007577	63	.	.	ID=3145;Type=deletion;Left=chr3:25005891-25006236+;Right=chr3:25007253-25007577+;Distance=1362;DiscordantMatePairAlignments=63;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=L1ME3B:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72404999 (chr3:25005891-25007246);Frequency=0.65
chr3	CG	SV	25005891	25006236	63	+	.	ID=3145;Type=deletion;Left=chr3:25005891-25006236;Right=chr3:25007253-25007577
chr3	CG	SV	25007253	25007577	63	+	.	ID=3145;Type=deletion;Left=chr3:25005891-25006236;Right=chr3:25007253-25007577
chr3	CG	SV	26425974	26427700	93	.	.	ID=3144;Type=deletion;Left=chr3:26425974-26426414+;Right=chr3:26427303-26427700+;Distance=1329;DiscordantMatePairAlignments=93;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66805914 (chr3:26425974-26427303);Frequency=0.94
chr3	CG	SV	26425974	26426414	93	+	.	ID=3144;Type=deletion;Left=chr3:26425974-26426414;Right=chr3:26427303-26427700
chr3	CG	SV	26427303	26427700	93	+	.	ID=3144;Type=deletion;Left=chr3:26425974-26426414;Right=chr3:26427303-26427700
chr3	CG	SV	31908009	32331754	23	.	.	ID=1185;Type=tandem-duplication;Left=chr3:31908009-31908327-;Right=chr3:32331346-32331754-;Distance=423427;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_017784:-;RightGenes=NM_178868:+;XRef=;Frequency=0.00
chr3	CG	SV	31908009	31908327	23	-	.	ID=1185;Type=tandem-duplication;Left=chr3:31908009-31908327;Right=chr3:32331346-32331754
chr3	CG	SV	32331346	32331754	23	-	.	ID=1185;Type=tandem-duplication;Left=chr3:31908009-31908327;Right=chr3:32331346-32331754
chr3	CG	SV	32077056	32083363	176	.	.	ID=3143;Type=deletion;Left=chr3:32077056-32077496+;Right=chr3:32082889-32083363+;Distance=5833;DiscordantMatePairAlignments=176;LeftRepeat=;RightRepeat=MER31B:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs71946771 (chr3:32077054-32082887);Frequency=0.94
chr3	CG	SV	32077056	32077496	176	+	.	ID=3143;Type=deletion;Left=chr3:32077056-32077496;Right=chr3:32082889-32083363
chr3	CG	SV	32082889	32083363	176	+	.	ID=3143;Type=deletion;Left=chr3:32077056-32077496;Right=chr3:32082889-32083363
chr3	CG	SV	32176833	32177505	32	.	.	ID=3142;Type=deletion;Left=chr3:32176833-32177283+;Right=chr3:32177165-32177505+;Distance=332;DiscordantMatePairAlignments=32;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Tandem GGAT;RightRepeat=;LeftGenes=NM_015141:+;RightGenes=NM_015141:+;XRef=rs72009600 (chr3:32176730-32177061);Frequency=0.47
chr3	CG	SV	32176833	32177283	32	+	.	ID=3142;Type=deletion;Left=chr3:32176833-32177283;Right=chr3:32177165-32177505
chr3	CG	SV	32177165	32177505	32	+	.	ID=3142;Type=deletion;Left=chr3:32176833-32177283;Right=chr3:32177165-32177505
chr3	CG	SV	32781819	32783279	18	.	.	ID=3140;Type=deletion;Left=chr3:32781819-32782227+;Right=chr3:32783134-32783279+;Distance=1315;DiscordantMatePairAlignments=18;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_015442:+;RightGenes=NM_015442:+;XRef=rs72274862 (chr3:32781540-32782847);Frequency=0.94
chr3	CG	SV	32781819	32782227	18	+	.	ID=3140;Type=deletion;Left=chr3:32781819-32782227;Right=chr3:32783134-32783279
chr3	CG	SV	32783134	32783279	18	+	.	ID=3140;Type=deletion;Left=chr3:32781819-32782227;Right=chr3:32783134-32783279
chr3	CG	SV	32877419	32878186	11	.	.	ID=3139;Type=deletion;Left=chr3:32877419-32877649+;Right=chr3:32877977-32878186+;Distance=558;DiscordantMatePairAlignments=11;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluJo:SINE:Alu;LeftGenes=NM_001039111:+;RightGenes=NM_001039111:+;XRef=;Frequency=0.00
chr3	CG	SV	32877419	32877649	11	+	.	ID=3139;Type=deletion;Left=chr3:32877419-32877649;Right=chr3:32877977-32878186
chr3	CG	SV	32877977	32878186	11	+	.	ID=3139;Type=deletion;Left=chr3:32877419-32877649;Right=chr3:32877977-32878186
chr3	CG	SV	33528199	33529539	23	.	.	ID=3138;Type=deletion;Left=chr3:33528199-33528607+;Right=chr3:33529085-33529539+;Distance=886;DiscordantMatePairAlignments=23;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_015097:-;RightGenes=NM_015097:-;XRef=;Frequency=0.82
chr3	CG	SV	33528199	33528607	23	+	.	ID=3138;Type=deletion;Left=chr3:33528199-33528607;Right=chr3:33529085-33529539
chr3	CG	SV	33529085	33529539	23	+	.	ID=3138;Type=deletion;Left=chr3:33528199-33528607;Right=chr3:33529085-33529539
chr3	CG	SV	36083138	36083916	13	.	.	ID=3136;Type=deletion;Left=chr3:36083138-36083500+;Right=chr3:36083456-36083916+;Distance=318;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=MLT1C:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs66578426 (chr3:36083124-36083442);Frequency=0.94
chr3	CG	SV	36083138	36083500	13	+	.	ID=3136;Type=deletion;Left=chr3:36083138-36083500;Right=chr3:36083456-36083916
chr3	CG	SV	36083456	36083916	13	+	.	ID=3136;Type=deletion;Left=chr3:36083138-36083500;Right=chr3:36083456-36083916
chr3	CG	SV	42813374	42816110	50	.	.	ID=3135;Type=deletion;Left=chr3:42813374-42813793+;Right=chr3:42815828-42816110+;Distance=2454;DiscordantMatePairAlignments=50;LeftRepeat=LTR8:LTR:ERV1;RightRepeat=LTR8:LTR:ERV1;LeftGenes=NM_001099668:-;NM_001099669:-;NM_014056:-;RightGenes=NM_001099668:-;NM_001099669:-;NM_014056:-;XRef=rs71052669 (chr3:42813377-42815831);Frequency=1.00
chr3	CG	SV	42813374	42813793	50	+	.	ID=3135;Type=deletion;Left=chr3:42813374-42813793;Right=chr3:42815828-42816110
chr3	CG	SV	42815828	42816110	50	+	.	ID=3135;Type=deletion;Left=chr3:42813374-42813793;Right=chr3:42815828-42816110
chr3	CG	SV	43006110	43006723	19	.	.	ID=3133;Type=deletion;Left=chr3:43006110-43006579+;Right=chr3:43006438-43006723+;Distance=328;DiscordantMatePairAlignments=19;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_001129908:+;RightGenes=NM_001129908:+;XRef=rs67857491 (chr3:43006096-43006424);Frequency=1.00
chr3	CG	SV	43006110	43006579	19	+	.	ID=3133;Type=deletion;Left=chr3:43006110-43006579;Right=chr3:43006438-43006723
chr3	CG	SV	43006438	43006723	19	+	.	ID=3133;Type=deletion;Left=chr3:43006110-43006579;Right=chr3:43006438-43006723
chr3	CG	SV	44715548	44717402	31	.	.	ID=455;Type=probable-inversion;Left=chr3:44715548-44715995-;Right=chr3:44717288-44717402+;Distance=1293;DiscordantMatePairAlignments=31;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	44715548	44715995	31	-	.	ID=455;Type=probable-inversion;Left=chr3:44715548-44715995;Right=chr3:44717288-44717402
chr3	CG	SV	44717288	44717402	31	-	.	ID=455;Type=probable-inversion;Left=chr3:44715548-44715995;Right=chr3:44717288-44717402
chr3	CG	SV	45584923	45585677	55	.	.	ID=3132;Type=deletion;Left=chr3:45584923-45585416+;Right=chr3:45585339-45585677+;Distance=416;DiscordantMatePairAlignments=55;LeftRepeat=L1PA14:LINE:L1;RightRepeat=L1PA14:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71052671 (chr3:45584851-45585267);Frequency=1.00
chr3	CG	SV	45584923	45585416	55	+	.	ID=3132;Type=deletion;Left=chr3:45584923-45585416;Right=chr3:45585339-45585677
chr3	CG	SV	45585339	45585677	55	+	.	ID=3132;Type=deletion;Left=chr3:45584923-45585416;Right=chr3:45585339-45585677
chr3	CG	SV	47465673	47469062	56	.	.	ID=3130;Type=deletion;Left=chr3:47465673-47466054+;Right=chr3:47468446-47469062+;Distance=2773;DiscordantMatePairAlignments=56;LeftRepeat=L1MD2:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=NM_012235:-;RightGenes=NM_012235:-;XRef=rs71996089 (chr3:47465671-47468444);Frequency=0.47
chr3	CG	SV	47465673	47466054	56	+	.	ID=3130;Type=deletion;Left=chr3:47465673-47466054;Right=chr3:47468446-47469062
chr3	CG	SV	47468446	47469062	56	+	.	ID=3130;Type=deletion;Left=chr3:47465673-47466054;Right=chr3:47468446-47469062
chr3	CG	SV	49172767	49173498	21	.	.	ID=3129;Type=deletion;Left=chr3:49172767-49172966+;Right=chr3:49173090-49173498+;Distance=323;DiscordantMatePairAlignments=21;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67045951 (chr3:49172753-49173076);Frequency=0.76
chr3	CG	SV	49172767	49172966	21	+	.	ID=3129;Type=deletion;Left=chr3:49172767-49172966;Right=chr3:49173090-49173498
chr3	CG	SV	49173090	49173498	21	+	.	ID=3129;Type=deletion;Left=chr3:49172767-49172966;Right=chr3:49173090-49173498
chr3	CG	SV	49469291	49470046	33	.	.	ID=3128;Type=deletion;Left=chr3:49469291-49469715+;Right=chr3:49469620-49470046+;Distance=329;DiscordantMatePairAlignments=33;LeftRepeat=MIRb:SINE:MIR;Tandem T;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66794416 (chr3:49469291-49469620);Frequency=1.00
chr3	CG	SV	49469291	49469715	33	+	.	ID=3128;Type=deletion;Left=chr3:49469291-49469715;Right=chr3:49469620-49470046
chr3	CG	SV	49469620	49470046	33	+	.	ID=3128;Type=deletion;Left=chr3:49469291-49469715;Right=chr3:49469620-49470046
chr3	CG	SV	53258062	53258866	10	.	.	ID=3125;Type=deletion;Left=chr3:53258062-53258260+;Right=chr3:53258639-53258866+;Distance=577;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001064:-;NM_001135055:-;NM_001135056:-;RightGenes=NM_001064:-;NM_001135055:-;NM_001135056:-;XRef=;Frequency=0.00
chr3	CG	SV	53258062	53258260	10	+	.	ID=3125;Type=deletion;Left=chr3:53258062-53258260;Right=chr3:53258639-53258866
chr3	CG	SV	53258639	53258866	10	+	.	ID=3125;Type=deletion;Left=chr3:53258062-53258260;Right=chr3:53258639-53258866
chr3	CG	SV	53746272	53907380	19	.	.	ID=1183;Type=tandem-duplication;Left=chr3:53746272-53746648-;Right=chr3:53907156-53907380-;Distance=160732;DiscordantMatePairAlignments=19;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=L1ME4a:LINE:L1;LeftGenes=NM_000720:+;NM_001128839:+;NM_001128840:+;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	53746272	53746648	19	-	.	ID=1183;Type=tandem-duplication;Left=chr3:53746272-53746648;Right=chr3:53907156-53907380
chr3	CG	SV	53907156	53907380	19	-	.	ID=1183;Type=tandem-duplication;Left=chr3:53746272-53746648;Right=chr3:53907156-53907380
chr3	CG	SV	63109897	63110748	32	.	.	ID=3122;Type=deletion;Left=chr3:63109897-63110307+;Right=chr3:63110350-63110748+;Distance=453;DiscordantMatePairAlignments=32;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs68090124 (chr3:63109897-63110350);Frequency=0.00
chr3	CG	SV	63109897	63110307	32	+	.	ID=3122;Type=deletion;Left=chr3:63109897-63110307;Right=chr3:63110350-63110748
chr3	CG	SV	63110350	63110748	32	+	.	ID=3122;Type=deletion;Left=chr3:63109897-63110307;Right=chr3:63110350-63110748
chr3	CG	SV	65092943	65094984	35	.	.	ID=3121;Type=deletion;Left=chr3:65092943-65093368+;Right=chr3:65094815-65094984+;Distance=1872;DiscordantMatePairAlignments=35;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr3	CG	SV	65092943	65093368	35	+	.	ID=3121;Type=deletion;Left=chr3:65092943-65093368;Right=chr3:65094815-65094984
chr3	CG	SV	65094815	65094984	35	+	.	ID=3121;Type=deletion;Left=chr3:65092943-65093368;Right=chr3:65094815-65094984
chr3	CG	SV	66034572	66035586	33	.	.	ID=1180;Type=tandem-duplication;Left=chr3:66034572-66034979-;Right=chr3:66035257-66035586-;Distance=607;DiscordantMatePairAlignments=33;LeftRepeat=Alu:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr3	CG	SV	66034572	66034979	33	-	.	ID=1180;Type=tandem-duplication;Left=chr3:66034572-66034979;Right=chr3:66035257-66035586
chr3	CG	SV	66035257	66035586	33	-	.	ID=1180;Type=tandem-duplication;Left=chr3:66034572-66034979;Right=chr3:66035257-66035586
chr3	CG	SV	67576389	67579949	15	.	.	ID=3120;Type=deletion;Left=chr3:67576389-67576840+;Right=chr3:67579493-67579949+;Distance=3104;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_003848:-;RightGenes=NM_003848:-;XRef=rs71052690 (chr3:67576398-67579502);Frequency=1.00
chr3	CG	SV	67576389	67576840	15	+	.	ID=3120;Type=deletion;Left=chr3:67576389-67576840;Right=chr3:67579493-67579949
chr3	CG	SV	67579493	67579949	15	+	.	ID=3120;Type=deletion;Left=chr3:67576389-67576840;Right=chr3:67579493-67579949
chr3	CG	SV	68822380	68830935	20	.	.	ID=3119;Type=deletion;Left=chr3:68822380-68822749+;Right=chr3:68830555-68830935+;Distance=8175;DiscordantMatePairAlignments=20;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67150556 (chr3:68822377-68830553);Frequency=0.88
chr3	CG	SV	68822380	68822749	20	+	.	ID=3119;Type=deletion;Left=chr3:68822380-68822749;Right=chr3:68830555-68830935
chr3	CG	SV	68830555	68830935	20	+	.	ID=3119;Type=deletion;Left=chr3:68822380-68822749;Right=chr3:68830555-68830935
chr3	CG	SV	70497811	70498538	13	.	.	ID=3118;Type=deletion;Left=chr3:70497811-70498244+;Right=chr3:70498146-70498538+;Distance=335;DiscordantMatePairAlignments=13;LeftRepeat=L1MC3:LINE:L1;Tandem T;RightRepeat=L1MC3:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71052691 (chr3:70497811-70498146);Frequency=0.88
chr3	CG	SV	70497811	70498244	13	+	.	ID=3118;Type=deletion;Left=chr3:70497811-70498244;Right=chr3:70498146-70498538
chr3	CG	SV	70498146	70498538	13	+	.	ID=3118;Type=deletion;Left=chr3:70497811-70498244;Right=chr3:70498146-70498538
chr3	CG	SV	75359579	75361905	39	.	.	ID=3116;Type=deletion;Left=chr3:75359579-75360070+;Right=chr3:75361610-75361905+;Distance=2031;DiscordantMatePairAlignments=39;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72396976 (chr3:75359579-75361608);Frequency=1.00
chr3	CG	SV	75359579	75360070	39	+	.	ID=3116;Type=deletion;Left=chr3:75359579-75360070;Right=chr3:75361610-75361905
chr3	CG	SV	75361610	75361905	39	+	.	ID=3116;Type=deletion;Left=chr3:75359579-75360070;Right=chr3:75361610-75361905
chr3	CG	SV	75779122	75779991	25	.	.	ID=3115;Type=deletion;Left=chr3:75779122-75779429+;Right=chr3:75779615-75779991+;Distance=493;DiscordantMatePairAlignments=25;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	75779122	75779429	25	+	.	ID=3115;Type=deletion;Left=chr3:75779122-75779429;Right=chr3:75779615-75779991
chr3	CG	SV	75779615	75779991	25	+	.	ID=3115;Type=deletion;Left=chr3:75779122-75779429;Right=chr3:75779615-75779991
chr3	CG	SV	75870059	75870740	10	.	.	ID=3114;Type=deletion;Left=chr3:75870059-75870491+;Right=chr3:75870479-75870740+;Distance=420;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 84;RightRepeat=Self chain;Tandem period 84;LeftGenes=NM_001128223:-;RightGenes=NM_001128223:-;XRef=;Frequency=0.88
chr3	CG	SV	75870059	75870491	10	+	.	ID=3114;Type=deletion;Left=chr3:75870059-75870491;Right=chr3:75870479-75870740
chr3	CG	SV	75870479	75870740	10	+	.	ID=3114;Type=deletion;Left=chr3:75870059-75870491;Right=chr3:75870479-75870740
chr3	CG	SV	76097048	76097427	33	.	.	ID=1178;Type=tandem-duplication;Left=chr3:76097048-76097246-;Right=chr3:76097249-76097427-;Distance=181;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	76097048	76097246	33	-	.	ID=1178;Type=tandem-duplication;Left=chr3:76097048-76097246;Right=chr3:76097249-76097427
chr3	CG	SV	76097249	76097427	33	-	.	ID=1178;Type=tandem-duplication;Left=chr3:76097048-76097246;Right=chr3:76097249-76097427
chr3	CG	SV	76901816	76969861	81	.	.	ID=3113;Type=deletion;Left=chr3:76901816-76902233+;Right=chr3:76969495-76969861+;Distance=67679;DiscordantMatePairAlignments=81;LeftRepeat=;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	76901816	76902233	81	+	.	ID=3113;Type=deletion;Left=chr3:76901816-76902233;Right=chr3:76969495-76969861
chr3	CG	SV	76969495	76969861	81	+	.	ID=3113;Type=deletion;Left=chr3:76901816-76902233;Right=chr3:76969495-76969861
chr3	CG	SV	78862113	78862902	12	.	.	ID=3112;Type=deletion;Left=chr3:78862113-78862476+;Right=chr3:78862413-78862902+;Distance=300;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=NM_001145844:-;NM_001145845:-;NM_002941:-;NM_133631:-;RightGenes=NM_001145844:-;NM_001145845:-;NM_002941:-;NM_133631:-;XRef=rs6147914 (chr3:78862113-78862413);Frequency=0.82
chr3	CG	SV	78862113	78862476	12	+	.	ID=3112;Type=deletion;Left=chr3:78862113-78862476;Right=chr3:78862413-78862902
chr3	CG	SV	78862413	78862902	12	+	.	ID=3112;Type=deletion;Left=chr3:78862113-78862476;Right=chr3:78862413-78862902
chr3	CG	SV	81008004	81009765	50	.	.	ID=3111;Type=deletion;Left=chr3:81008004-81008376+;Right=chr3:81009297-81009765+;Distance=1293;DiscordantMatePairAlignments=50;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71052702 (chr3:81008004-81009297);Frequency=0.88
chr3	CG	SV	81008004	81008376	50	+	.	ID=3111;Type=deletion;Left=chr3:81008004-81008376;Right=chr3:81009297-81009765
chr3	CG	SV	81009297	81009765	50	+	.	ID=3111;Type=deletion;Left=chr3:81008004-81008376;Right=chr3:81009297-81009765
chr3	CG	SV	84187632	84190450	46	.	.	ID=3108;Type=deletion;Left=chr3:84187632-84188044+;Right=chr3:84190074-84190450+;Distance=2442;DiscordantMatePairAlignments=46;LeftRepeat=L1MC1:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr3	CG	SV	84187632	84188044	46	+	.	ID=3108;Type=deletion;Left=chr3:84187632-84188044;Right=chr3:84190074-84190450
chr3	CG	SV	84190074	84190450	46	+	.	ID=3108;Type=deletion;Left=chr3:84187632-84188044;Right=chr3:84190074-84190450
chr3	CG	SV	101111472	101112741	162	.	.	ID=3102;Type=deletion;Left=chr3:101111472-101111937+;Right=chr3:101112321-101112741+;Distance=849;DiscordantMatePairAlignments=162;LeftRepeat=;RightRepeat=;LeftGenes=NM_001042459:-;NM_032359:+;NM_182909:-;RightGenes=NM_001042459:-;NM_032359:+;NM_182909:-;XRef=rs68054323 (chr3:101111472-101112320);Frequency=0.47
chr3	CG	SV	101111472	101111937	162	+	.	ID=3102;Type=deletion;Left=chr3:101111472-101111937;Right=chr3:101112321-101112741
chr3	CG	SV	101112321	101112741	162	+	.	ID=3102;Type=deletion;Left=chr3:101111472-101111937;Right=chr3:101112321-101112741
chr3	CG	SV	103766477	103767253	23	.	.	ID=3098;Type=deletion;Left=chr3:103766477-103766908+;Right=chr3:103766815-103767253+;Distance=338;DiscordantMatePairAlignments=23;LeftRepeat=Tandem T;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67864955 (chr3:103766477-103766815);Frequency=0.76
chr3	CG	SV	103766477	103766908	23	+	.	ID=3098;Type=deletion;Left=chr3:103766477-103766908;Right=chr3:103766815-103767253
chr3	CG	SV	103766815	103767253	23	+	.	ID=3098;Type=deletion;Left=chr3:103766477-103766908;Right=chr3:103766815-103767253
chr3	CG	SV	105760890	105762136	12	.	.	ID=3097;Type=deletion;Left=chr3:105760890-105761231+;Right=chr3:105761737-105762136+;Distance=847;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67066218 (chr3:105760889-105761736);Frequency=0.41
chr3	CG	SV	105760890	105761231	12	+	.	ID=3097;Type=deletion;Left=chr3:105760890-105761231;Right=chr3:105761737-105762136
chr3	CG	SV	105761737	105762136	12	+	.	ID=3097;Type=deletion;Left=chr3:105760890-105761231;Right=chr3:105761737-105762136
chr3	CG	SV	106558358	106561115	61	.	.	ID=3096;Type=deletion;Left=chr3:106558358-106558743+;Right=chr3:106560683-106561115+;Distance=2325;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr3	CG	SV	106558358	106558743	61	+	.	ID=3096;Type=deletion;Left=chr3:106558358-106558743;Right=chr3:106560683-106561115
chr3	CG	SV	106560683	106561115	61	+	.	ID=3096;Type=deletion;Left=chr3:106558358-106558743;Right=chr3:106560683-106561115
chr3	CG	SV	107311554	107314649	37	.	.	ID=3094;Type=deletion;Left=chr3:107311554-107311768+;Right=chr3:107314321-107314649+;Distance=2767;DiscordantMatePairAlignments=37;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr3	CG	SV	107311554	107311768	37	+	.	ID=3094;Type=deletion;Left=chr3:107311554-107311768;Right=chr3:107314321-107314649
chr3	CG	SV	107314321	107314649	37	+	.	ID=3094;Type=deletion;Left=chr3:107311554-107311768;Right=chr3:107314321-107314649
chr3	CG	SV	113950091	113950859	27	.	.	ID=3093;Type=deletion;Left=chr3:113950091-113950626+;Right=chr3:113950421-113950859+;Distance=330;DiscordantMatePairAlignments=27;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10528219 (chr3:113950072-113950402);Frequency=1.00
chr3	CG	SV	113950091	113950626	27	+	.	ID=3093;Type=deletion;Left=chr3:113950091-113950626;Right=chr3:113950421-113950859
chr3	CG	SV	113950421	113950859	27	+	.	ID=3093;Type=deletion;Left=chr3:113950091-113950626;Right=chr3:113950421-113950859
chr3	CG	SV	117687524	117688270	17	.	.	ID=3092;Type=deletion;Left=chr3:117687524-117687929+;Right=chr3:117687868-117688270+;Distance=344;DiscordantMatePairAlignments=17;LeftRepeat=L1PA12:LINE:L1;RightRepeat=L1PA12:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr3	CG	SV	117687524	117687929	17	+	.	ID=3092;Type=deletion;Left=chr3:117687524-117687929;Right=chr3:117687868-117688270
chr3	CG	SV	117687868	117688270	17	+	.	ID=3092;Type=deletion;Left=chr3:117687524-117687929;Right=chr3:117687868-117688270
chr3	CG	SV	121376675	121377598	117	.	.	ID=3089;Type=deletion;Left=chr3:121376675-121377123+;Right=chr3:121377135-121377598+;Distance=460;DiscordantMatePairAlignments=117;LeftRepeat=;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=NM_001168271:-;NM_153002:-;RightGenes=NM_001168271:-;NM_153002:-;XRef=rs67399158 (chr3:121376673-121377133);Frequency=1.00
chr3	CG	SV	121376675	121377123	117	+	.	ID=3089;Type=deletion;Left=chr3:121376675-121377123;Right=chr3:121377135-121377598
chr3	CG	SV	121377135	121377598	117	+	.	ID=3089;Type=deletion;Left=chr3:121376675-121377123;Right=chr3:121377135-121377598
chr3	CG	SV	124680312	124680982	16	.	.	ID=3086;Type=deletion;Left=chr3:124680312-124680828+;Right=chr3:124680665-124680982+;Distance=353;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 32;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71056127 (chr3:124680372-124680660);Frequency=1.00
chr3	CG	SV	124680312	124680828	16	+	.	ID=3086;Type=deletion;Left=chr3:124680312-124680828;Right=chr3:124680665-124680982
chr3	CG	SV	124680665	124680982	16	+	.	ID=3086;Type=deletion;Left=chr3:124680312-124680828;Right=chr3:124680665-124680982
chr3	CG	SV	124719447	124720145	14	.	.	ID=3085;Type=deletion;Left=chr3:124719447-124719976+;Right=chr3:124719762-124720145+;Distance=315;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=Charlie8:DNA:MER1_type;LeftGenes=NM_198402:-;RightGenes=NM_198402:-;XRef=rs72266851 (chr3:124719436-124719751);Frequency=1.00
chr3	CG	SV	124719447	124719976	14	+	.	ID=3085;Type=deletion;Left=chr3:124719447-124719976;Right=chr3:124719762-124720145
chr3	CG	SV	124719762	124720145	14	+	.	ID=3085;Type=deletion;Left=chr3:124719447-124719976;Right=chr3:124719762-124720145
chr3	CG	SV	126372743	126373950	21	.	.	ID=3084;Type=deletion;Left=chr3:126372743-126373019+;Right=chr3:126373513-126373950+;Distance=770;DiscordantMatePairAlignments=21;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_024628:-;RightGenes=NM_024628:-;XRef=rs66464009 (chr3:126372743-126373513);Frequency=1.00
chr3	CG	SV	126372743	126373019	21	+	.	ID=3084;Type=deletion;Left=chr3:126372743-126373019;Right=chr3:126373513-126373950
chr3	CG	SV	126373513	126373950	21	+	.	ID=3084;Type=deletion;Left=chr3:126372743-126373019;Right=chr3:126373513-126373950
chr3	CG	SV	126418990	126420275	53	.	.	ID=3083;Type=deletion;Left=chr3:126418990-126419231+;Right=chr3:126419859-126420275+;Distance=869;DiscordantMatePairAlignments=53;LeftRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72308239 (chr3:126418985-126419853);Frequency=0.82
chr3	CG	SV	126418990	126419231	53	+	.	ID=3083;Type=deletion;Left=chr3:126418990-126419231;Right=chr3:126419859-126420275
chr3	CG	SV	126419859	126420275	53	+	.	ID=3083;Type=deletion;Left=chr3:126418990-126419231;Right=chr3:126419859-126420275
chr3	CG	SV	127841628	127842391	14	.	.	ID=3082;Type=deletion;Left=chr3:127841628-127841996+;Right=chr3:127841955-127842391+;Distance=327;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs35645119 (chr3:127841628-127841955);Frequency=1.00
chr3	CG	SV	127841628	127841996	14	+	.	ID=3082;Type=deletion;Left=chr3:127841628-127841996;Right=chr3:127841955-127842391
chr3	CG	SV	127841955	127842391	14	+	.	ID=3082;Type=deletion;Left=chr3:127841628-127841996;Right=chr3:127841955-127842391
chr3	CG	SV	131830267	131836185	21	.	.	ID=3080;Type=deletion;Left=chr3:131830267-131830660+;Right=chr3:131835809-131836185+;Distance=5542;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=;LeftGenes=NM_001102608:+;RightGenes=NM_001102608:+;XRef=rs72337912 (chr3:131830267-131835809);Frequency=0.35
chr3	CG	SV	131830267	131830660	21	+	.	ID=3080;Type=deletion;Left=chr3:131830267-131830660;Right=chr3:131835809-131836185
chr3	CG	SV	131835809	131836185	21	+	.	ID=3080;Type=deletion;Left=chr3:131830267-131830660;Right=chr3:131835809-131836185
chr3	CG	SV	133471886	133478092	29	.	.	ID=3078;Type=deletion;Left=chr3:133471886-133472297+;Right=chr3:133477843-133478092+;Distance=5957;DiscordantMatePairAlignments=29;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67599226 (chr3:133471815-133477774);Frequency=0.41
chr3	CG	SV	133471886	133472297	29	+	.	ID=3078;Type=deletion;Left=chr3:133471886-133472297;Right=chr3:133477843-133478092
chr3	CG	SV	133477843	133478092	29	+	.	ID=3078;Type=deletion;Left=chr3:133471886-133472297;Right=chr3:133477843-133478092
chr3	CG	SV	134986462	134988279	84	.	.	ID=3077;Type=deletion;Left=chr3:134986462-134986895+;Right=chr3:134987778-134988279+;Distance=1316;DiscordantMatePairAlignments=84;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71056134 (chr3:134986472-134987788);Frequency=0.53
chr3	CG	SV	134986462	134986895	84	+	.	ID=3077;Type=deletion;Left=chr3:134986462-134986895;Right=chr3:134987778-134988279
chr3	CG	SV	134987778	134988279	84	+	.	ID=3077;Type=deletion;Left=chr3:134986462-134986895;Right=chr3:134987778-134988279
chr3	CG	SV	136156603	136157708	144	.	.	ID=3076;Type=deletion;Left=chr3:136156603-136157068+;Right=chr3:136157256-136157708+;Distance=653;DiscordantMatePairAlignments=144;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=NM_004441:+;RightGenes=NM_004441:+;XRef=rs68037545 (chr3:136156592-136157245);Frequency=0.82
chr3	CG	SV	136156603	136157068	144	+	.	ID=3076;Type=deletion;Left=chr3:136156603-136157068;Right=chr3:136157256-136157708
chr3	CG	SV	136157256	136157708	144	+	.	ID=3076;Type=deletion;Left=chr3:136156603-136157068;Right=chr3:136157256-136157708
chr3	CG	SV	142103520	142105048	32	.	.	ID=1176;Type=tandem-duplication;Left=chr3:142103520-142103797-;Right=chr3:142104723-142105048-;Distance=1251;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;RightRepeat=Tigger3b:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr3	CG	SV	142103520	142103797	32	-	.	ID=1176;Type=tandem-duplication;Left=chr3:142103520-142103797;Right=chr3:142104723-142105048
chr3	CG	SV	142104723	142105048	32	-	.	ID=1176;Type=tandem-duplication;Left=chr3:142103520-142103797;Right=chr3:142104723-142105048
chr3	CG	SV	147867880	147877825	25	.	.	ID=3072;Type=complex;Left=chr3:147867880-147868254+;Right=chr3:147877553-147877825+;Distance=9673;DiscordantMatePairAlignments=25;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs72156653 (chr3:147867880-147877553);Frequency=0.94
chr3	CG	SV	147867880	147868254	25	+	.	ID=3072;Type=complex;Left=chr3:147867880-147868254;Right=chr3:147877553-147877825
chr3	CG	SV	147877553	147877825	25	+	.	ID=3072;Type=complex;Left=chr3:147867880-147868254;Right=chr3:147877553-147877825
chr3	CG	SV	147872691	147877855	38	.	.	ID=1175;Type=complex;Left=chr3:147872691-147873094-;Right=chr3:147877555-147877855-;Distance=4761;DiscordantMatePairAlignments=38;LeftRepeat=L1PA16:LINE:L1;RightRepeat=THE1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	147872691	147873094	38	-	.	ID=1175;Type=complex;Left=chr3:147872691-147873094;Right=chr3:147877555-147877855
chr3	CG	SV	147877555	147877855	38	-	.	ID=1175;Type=complex;Left=chr3:147872691-147873094;Right=chr3:147877555-147877855
chr3	CG	SV	150049492	150050235	15	.	.	ID=3069;Type=deletion;Left=chr3:150049492-150049865+;Right=chr3:150049810-150050235+;Distance=318;DiscordantMatePairAlignments=15;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001871:+;RightGenes=NM_001871:+;XRef=rs10705315 (chr3:150049492-150049810);Frequency=1.00
chr3	CG	SV	150049492	150049865	15	+	.	ID=3069;Type=deletion;Left=chr3:150049492-150049865;Right=chr3:150049810-150050235
chr3	CG	SV	150049810	150050235	15	+	.	ID=3069;Type=deletion;Left=chr3:150049492-150049865;Right=chr3:150049810-150050235
chr3	CG	SV	150327076	150327769	12	.	.	ID=3068;Type=deletion;Left=chr3:150327076-150327529+;Right=chr3:150327404-150327769+;Distance=328;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10525495 (chr3:150327062-150327390);Frequency=1.00
chr3	CG	SV	150327076	150327529	12	+	.	ID=3068;Type=deletion;Left=chr3:150327076-150327529;Right=chr3:150327404-150327769
chr3	CG	SV	150327404	150327769	12	+	.	ID=3068;Type=deletion;Left=chr3:150327076-150327529;Right=chr3:150327404-150327769
chr3	CG	SV	150446060	150452855	26	.	.	ID=3067;Type=deletion;Left=chr3:150446060-150446311+;Right=chr3:150452398-150452855+;Distance=6338;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr3	CG	SV	150446060	150446311	26	+	.	ID=3067;Type=deletion;Left=chr3:150446060-150446311;Right=chr3:150452398-150452855
chr3	CG	SV	150452398	150452855	26	+	.	ID=3067;Type=deletion;Left=chr3:150446060-150446311;Right=chr3:150452398-150452855
chr3	CG	SV	150751166	150753272	44	.	.	ID=3066;Type=deletion;Left=chr3:150751166-150751538+;Right=chr3:150752841-150753272+;Distance=1675;DiscordantMatePairAlignments=44;LeftRepeat=;RightRepeat=;LeftGenes=NM_001168278:-;NM_001168280:-;NM_015472:-;RightGenes=NM_001168278:-;NM_001168280:-;NM_015472:-;XRef=rs67654479 (chr3:150751161-150752836);Frequency=0.35
chr3	CG	SV	150751166	150751538	44	+	.	ID=3066;Type=deletion;Left=chr3:150751166-150751538;Right=chr3:150752841-150753272
chr3	CG	SV	150752841	150753272	44	+	.	ID=3066;Type=deletion;Left=chr3:150751166-150751538;Right=chr3:150752841-150753272
chr3	CG	SV	153794419	153796216	85	.	.	ID=3065;Type=deletion;Left=chr3:153794419-153794959+;Right=chr3:153795851-153796216+;Distance=1432;DiscordantMatePairAlignments=85;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67110903 (chr3:153794413-153795845);Frequency=1.00
chr3	CG	SV	153794419	153794959	85	+	.	ID=3065;Type=deletion;Left=chr3:153794419-153794959;Right=chr3:153795851-153796216
chr3	CG	SV	153795851	153796216	85	+	.	ID=3065;Type=deletion;Left=chr3:153794419-153794959;Right=chr3:153795851-153796216
chr3	CG	SV	157438519	157442529	26	.	.	ID=3063;Type=deletion;Left=chr3:157438519-157438967+;Right=chr3:157442174-157442529+;Distance=3655;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=HAL1:LINE:L1;LeftGenes=NM_003471:+;NM_172160:+;RightGenes=NM_003471:+;NM_172160:+;XRef=;Frequency=0.00
chr3	CG	SV	157438519	157438967	26	+	.	ID=3063;Type=deletion;Left=chr3:157438519-157438967;Right=chr3:157442174-157442529
chr3	CG	SV	157442174	157442529	26	+	.	ID=3063;Type=deletion;Left=chr3:157438519-157438967;Right=chr3:157442174-157442529
chr3	CG	SV	160278484	160279031	20	.	.	ID=450;Type=probable-inversion;Left=chr3:160278484-160278568-;Right=chr3:160278610-160279031+;Distance=42;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=;LeftGenes=NM_001042705:+;NM_001042706:+;RightGenes=NM_001042705:+;NM_001042706:+;XRef=;Frequency=0.35
chr3	CG	SV	160278484	160278568	20	-	.	ID=450;Type=probable-inversion;Left=chr3:160278484-160278568;Right=chr3:160278610-160279031
chr3	CG	SV	160278610	160279031	20	-	.	ID=450;Type=probable-inversion;Left=chr3:160278484-160278568;Right=chr3:160278610-160279031
chr3	CG	SV	162162965	162169100	26	.	.	ID=3061;Type=deletion;Left=chr3:162162965-162163344+;Right=chr3:162168702-162169100+;Distance=5737;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=;LeftGenes=NM_139245:+;RightGenes=NM_139245:+;XRef=;Frequency=0.00
chr3	CG	SV	162162965	162163344	26	+	.	ID=3061;Type=deletion;Left=chr3:162162965-162163344;Right=chr3:162168702-162169100
chr3	CG	SV	162168702	162169100	26	+	.	ID=3061;Type=deletion;Left=chr3:162162965-162163344;Right=chr3:162168702-162169100
chr3	CG	SV	162729422	162730131	20	.	.	ID=3060;Type=deletion;Left=chr3:162729422-162729876+;Right=chr3:162729757-162730131+;Distance=335;DiscordantMatePairAlignments=20;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72289031 (chr3:162729422-162729757);Frequency=0.65
chr3	CG	SV	162729422	162729876	20	+	.	ID=3060;Type=deletion;Left=chr3:162729422-162729876;Right=chr3:162729757-162730131
chr3	CG	SV	162729757	162730131	20	+	.	ID=3060;Type=deletion;Left=chr3:162729422-162729876;Right=chr3:162729757-162730131
chr3	CG	SV	164008436	164030335	92	.	.	ID=3970;Type=complex;Left=chr3:164008436-164008875+;Right=chr3:164029907-164030335-;Distance=21899;DiscordantMatePairAlignments=92;LeftRepeat=MIR:SINE:MIR;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr3	CG	SV	164008436	164008875	92	+	.	ID=3970;Type=complex;Left=chr3:164008436-164008875;Right=chr3:164029907-164030335
chr3	CG	SV	164029907	164030335	92	+	.	ID=3970;Type=complex;Left=chr3:164008436-164008875;Right=chr3:164029907-164030335
chr3	CG	SV	164027622	164030610	36	.	.	ID=449;Type=complex;Left=chr3:164027622-164028056-;Right=chr3:164030352-164030610+;Distance=2296;DiscordantMatePairAlignments=36;LeftRepeat=THE1C:LTR:MaLR;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr3	CG	SV	164027622	164028056	36	-	.	ID=449;Type=complex;Left=chr3:164027622-164028056;Right=chr3:164030352-164030610
chr3	CG	SV	164030352	164030610	36	-	.	ID=449;Type=complex;Left=chr3:164027622-164028056;Right=chr3:164030352-164030610
chr3	CG	SV	164247595	164252145	43	.	.	ID=3059;Type=deletion;Left=chr3:164247595-164247885+;Right=chr3:164251778-164252145+;Distance=4183;DiscordantMatePairAlignments=43;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Tandem TG;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67657160 (chr3:164247595-164251776);Frequency=0.88
chr3	CG	SV	164247595	164247885	43	+	.	ID=3059;Type=deletion;Left=chr3:164247595-164247885;Right=chr3:164251778-164252145
chr3	CG	SV	164251778	164252145	43	+	.	ID=3059;Type=deletion;Left=chr3:164247595-164247885;Right=chr3:164251778-164252145
chr3	CG	SV	175552690	175562478	50	.	.	ID=1171;Type=tandem-duplication;Left=chr3:175552690-175553075-;Right=chr3:175562064-175562478-;Distance=9403;DiscordantMatePairAlignments=50;LeftRepeat=L1MC3:LINE:L1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	175552690	175553075	50	-	.	ID=1171;Type=tandem-duplication;Left=chr3:175552690-175553075;Right=chr3:175562064-175562478
chr3	CG	SV	175562064	175562478	50	-	.	ID=1171;Type=tandem-duplication;Left=chr3:175552690-175553075;Right=chr3:175562064-175562478
chr3	CG	SV	175781833	175804734	27	.	.	ID=3057;Type=deletion;Left=chr3:175781833-175782190+;Right=chr3:175804340-175804734+;Distance=22507;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	175781833	175782190	27	+	.	ID=3057;Type=deletion;Left=chr3:175781833-175782190;Right=chr3:175804340-175804734
chr3	CG	SV	175804340	175804734	27	+	.	ID=3057;Type=deletion;Left=chr3:175781833-175782190;Right=chr3:175804340-175804734
chr3	CG	SV	181137035	181137908	33	.	.	ID=3055;Type=deletion;Left=chr3:181137035-181137509+;Right=chr3:181137500-181137908+;Distance=465;DiscordantMatePairAlignments=33;LeftRepeat=;RightRepeat=;LeftGenes=NM_016559:-;RightGenes=NM_016559:-;XRef=rs66526785 (chr3:181137035-181137500);Frequency=0.94
chr3	CG	SV	181137035	181137509	33	+	.	ID=3055;Type=deletion;Left=chr3:181137035-181137509;Right=chr3:181137500-181137908
chr3	CG	SV	181137500	181137908	33	+	.	ID=3055;Type=deletion;Left=chr3:181137035-181137509;Right=chr3:181137500-181137908
chr3	CG	SV	186500039	186500647	10	.	.	ID=3053;Type=deletion;Left=chr3:186500039-186500477+;Right=chr3:186500363-186500647+;Distance=324;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=L1MB1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	186500039	186500477	10	+	.	ID=3053;Type=deletion;Left=chr3:186500039-186500477;Right=chr3:186500363-186500647
chr3	CG	SV	186500363	186500647	10	+	.	ID=3053;Type=deletion;Left=chr3:186500039-186500477;Right=chr3:186500363-186500647
chr3	CG	SV	188063727	188068517	87	.	.	ID=3052;Type=deletion;Left=chr3:188063727-188064081+;Right=chr3:188067996-188068517+;Distance=4269;DiscordantMatePairAlignments=87;LeftRepeat=Tandem TCCCTC;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67678013 (chr3:188063727-188067996);Frequency=1.00
chr3	CG	SV	188063727	188064081	87	+	.	ID=3052;Type=deletion;Left=chr3:188063727-188064081;Right=chr3:188067996-188068517
chr3	CG	SV	188067996	188068517	87	+	.	ID=3052;Type=deletion;Left=chr3:188063727-188064081;Right=chr3:188067996-188068517
chr3	CG	SV	189787539	189788019	16	.	.	ID=3051;Type=deletion;Left=chr3:189787539-189787975+;Right=chr3:189787872-189788019+;Distance=333;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=;LeftGenes=NM_001167671:+;NM_001167672:+;NM_005578:+;RightGenes=NM_001167671:+;NM_001167672:+;NM_005578:+;XRef=;Frequency=1.00
chr3	CG	SV	189787539	189787975	16	+	.	ID=3051;Type=deletion;Left=chr3:189787539-189787975;Right=chr3:189787872-189788019
chr3	CG	SV	189787872	189788019	16	+	.	ID=3051;Type=deletion;Left=chr3:189787539-189787975;Right=chr3:189787872-189788019
chr3	CG	SV	193338792	193339625	36	.	.	ID=3048;Type=deletion;Left=chr3:193338792-193339225+;Right=chr3:193339130-193339625+;Distance=338;DiscordantMatePairAlignments=36;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10530619 (chr3:193338792-193339130);Frequency=1.00
chr3	CG	SV	193338792	193339225	36	+	.	ID=3048;Type=deletion;Left=chr3:193338792-193339225;Right=chr3:193339130-193339625
chr3	CG	SV	193339130	193339625	36	+	.	ID=3048;Type=deletion;Left=chr3:193338792-193339225;Right=chr3:193339130-193339625
chr3	CG	SV	193545888	193546481	13	.	.	ID=3047;Type=deletion;Left=chr3:193545888-193546324+;Right=chr3:193546198-193546481+;Distance=310;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_004113:-;NM_021032:-;RightGenes=NM_004113:-;NM_021032:-;XRef=rs10527102 (chr3:193545875-193546185);Frequency=0.65
chr3	CG	SV	193545888	193546324	13	+	.	ID=3047;Type=deletion;Left=chr3:193545888-193546324;Right=chr3:193546198-193546481
chr3	CG	SV	193546198	193546481	13	+	.	ID=3047;Type=deletion;Left=chr3:193545888-193546324;Right=chr3:193546198-193546481
chr3	CG	SV	194358026	194368422	31	.	.	ID=3044;Type=deletion;Left=chr3:194358026-194358405+;Right=chr3:194368102-194368422+;Distance=10076;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	194358026	194358405	31	+	.	ID=3044;Type=deletion;Left=chr3:194358026-194358405;Right=chr3:194368102-194368422
chr3	CG	SV	194368102	194368422	31	+	.	ID=3044;Type=deletion;Left=chr3:194358026-194358405;Right=chr3:194368102-194368422
chr3	CG	SV	195865459	195866010	14	.	.	ID=3043;Type=deletion;Left=chr3:195865459-195865944+;Right=chr3:195865823-195866010+;Distance=364;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 28;RightRepeat=Self chain;Tandem period 28;LeftGenes=NM_018385:-;RightGenes=NM_018385:-;XRef=rs10705443 (chr3:195865374-195865766);Frequency=0.94
chr3	CG	SV	195865459	195865944	14	+	.	ID=3043;Type=deletion;Left=chr3:195865459-195865944;Right=chr3:195865823-195866010
chr3	CG	SV	195865823	195866010	14	+	.	ID=3043;Type=deletion;Left=chr3:195865459-195865944;Right=chr3:195865823-195866010
chr3	CG	SV	196024583	196027724	99	.	.	ID=3042;Type=distal-duplication;Left=chr3:196024583-196025129+;Right=chr3:196027549-196027724+;Distance=2966;DiscordantMatePairAlignments=99;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72236752 (chr3:196024579-196027545);Frequency=0.76
chr3	CG	SV	196024583	196025129	99	+	.	ID=3042;Type=distal-duplication;Left=chr3:196024583-196025129;Right=chr3:196027549-196027724
chr3	CG	SV	196027549	196027724	99	+	.	ID=3042;Type=distal-duplication;Left=chr3:196024583-196025129;Right=chr3:196027549-196027724
chr3	CG	SV	196024130	196027718	147	.	.	ID=1170;Type=distal-duplication;Left=chr3:196024130-196024598-;Right=chr3:196027544-196027718-;Distance=3120;DiscordantMatePairAlignments=147;LeftRepeat=;RightRepeat=Tandem period 120;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr3	CG	SV	196024130	196024598	147	-	.	ID=1170;Type=distal-duplication;Left=chr3:196024130-196024598;Right=chr3:196027544-196027718
chr3	CG	SV	196027544	196027718	147	-	.	ID=1170;Type=distal-duplication;Left=chr3:196024130-196024598;Right=chr3:196027544-196027718
chr3	CG	SV	197138792	197140025	21	.	.	ID=3040;Type=deletion;Left=chr3:197138792-197139213+;Right=chr3:197139765-197140025+;Distance=973;DiscordantMatePairAlignments=21;LeftRepeat=LTR5_Hs:LTR:ERVK;Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr3	CG	SV	197138792	197139213	21	+	.	ID=3040;Type=deletion;Left=chr3:197138792-197139213;Right=chr3:197139765-197140025
chr3	CG	SV	197139765	197140025	21	+	.	ID=3040;Type=deletion;Left=chr3:197138792-197139213;Right=chr3:197139765-197140025
chr3	CG	SV	198109852	198110177	51	.	.	ID=1168;Type=tandem-duplication;Left=chr3:198109852-198110014-;Right=chr3:198110025-198110177-;Distance=163;DiscordantMatePairAlignments=51;LeftRepeat=Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_152699:+;RightGenes=NM_152699:+;XRef=;Frequency=1.00
chr3	CG	SV	198109852	198110014	51	-	.	ID=1168;Type=tandem-duplication;Left=chr3:198109852-198110014;Right=chr3:198110025-198110177
chr3	CG	SV	198110025	198110177	51	-	.	ID=1168;Type=tandem-duplication;Left=chr3:198109852-198110014;Right=chr3:198110025-198110177
chr4	CG	SV	3581962	3582710	34	.	.	ID=3037;Type=deletion;Left=chr4:3581962-3582327+;Right=chr4:3582467-3582710+;Distance=505;DiscordantMatePairAlignments=34;LeftRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Self chain;Tandem CATC;Tandem period 19;Tandem period 27;Tandem period 35;Tandem period 53;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Self chain;Tandem CATC;Tandem period 19;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	3581962	3582327	34	+	.	ID=3037;Type=deletion;Left=chr4:3581962-3582327;Right=chr4:3582467-3582710
chr4	CG	SV	3582467	3582710	34	+	.	ID=3037;Type=deletion;Left=chr4:3581962-3582327;Right=chr4:3582467-3582710
chr4	CG	SV	3583174	3588586	47	.	.	ID=3036;Type=deletion;Left=chr4:3583174-3583619+;Right=chr4:3588419-3588586+;Distance=5245;DiscordantMatePairAlignments=47;LeftRepeat=Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	3583174	3583619	47	+	.	ID=3036;Type=deletion;Left=chr4:3583174-3583619;Right=chr4:3588419-3588586
chr4	CG	SV	3588419	3588586	47	+	.	ID=3036;Type=deletion;Left=chr4:3583174-3583619;Right=chr4:3588419-3588586
chr4	CG	SV	6948380	6951689	13	.	.	ID=3033;Type=deletion;Left=chr4:6948380-6948840+;Right=chr4:6951428-6951689+;Distance=3048;DiscordantMatePairAlignments=13;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs10523950 (chr4:6948185-6951235);Frequency=0.88
chr4	CG	SV	6948380	6948840	13	+	.	ID=3033;Type=deletion;Left=chr4:6948380-6948840;Right=chr4:6951428-6951689
chr4	CG	SV	6951428	6951689	13	+	.	ID=3033;Type=deletion;Left=chr4:6948380-6948840;Right=chr4:6951428-6951689
chr4	CG	SV	10001528	10011688	103	.	.	ID=3031;Type=deletion;Left=chr4:10001528-10001927+;Right=chr4:10011279-10011688+;Distance=9751;DiscordantMatePairAlignments=103;LeftRepeat=L1MA3:LINE:L1;RightRepeat=L1MEe:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr4	CG	SV	10001528	10001927	103	+	.	ID=3031;Type=deletion;Left=chr4:10001528-10001927;Right=chr4:10011279-10011688
chr4	CG	SV	10011279	10011688	103	+	.	ID=3031;Type=deletion;Left=chr4:10001528-10001927;Right=chr4:10011279-10011688
chr4	CG	SV	18688563	18695171	119	.	.	ID=3028;Type=deletion;Left=chr4:18688563-18688994+;Right=chr4:18694663-18695171+;Distance=6100;DiscordantMatePairAlignments=119;LeftRepeat=L1ME1:LINE:L1;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67516407 (chr4:18688548-18694648);Frequency=0.71
chr4	CG	SV	18688563	18688994	119	+	.	ID=3028;Type=deletion;Left=chr4:18688563-18688994;Right=chr4:18694663-18695171
chr4	CG	SV	18694663	18695171	119	+	.	ID=3028;Type=deletion;Left=chr4:18688563-18688994;Right=chr4:18694663-18695171
chr4	CG	SV	28030689	28031457	31	.	.	ID=3026;Type=deletion;Left=chr4:28030689-28031099+;Right=chr4:28031039-28031457+;Distance=350;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67669865 (chr4:28030689-28031039);Frequency=0.94
chr4	CG	SV	28030689	28031099	31	+	.	ID=3026;Type=deletion;Left=chr4:28030689-28031099;Right=chr4:28031039-28031457
chr4	CG	SV	28031039	28031457	31	+	.	ID=3026;Type=deletion;Left=chr4:28030689-28031099;Right=chr4:28031039-28031457
chr4	CG	SV	29270214	29270969	11	.	.	ID=3025;Type=deletion;Left=chr4:29270214-29270650+;Right=chr4:29270542-29270969+;Distance=328;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs34494660 (chr4:29270220-29270548);Frequency=1.00
chr4	CG	SV	29270214	29270650	11	+	.	ID=3025;Type=deletion;Left=chr4:29270214-29270650;Right=chr4:29270542-29270969
chr4	CG	SV	29270542	29270969	11	+	.	ID=3025;Type=deletion;Left=chr4:29270214-29270650;Right=chr4:29270542-29270969
chr4	CG	SV	30814925	30815654	11	.	.	ID=3023;Type=deletion;Left=chr4:30814925-30815332+;Right=chr4:30815244-30815654+;Distance=319;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs34306947 (chr4:30814913-30815232);Frequency=1.00
chr4	CG	SV	30814925	30815332	11	+	.	ID=3023;Type=deletion;Left=chr4:30814925-30815332;Right=chr4:30815244-30815654
chr4	CG	SV	30815244	30815654	11	+	.	ID=3023;Type=deletion;Left=chr4:30814925-30815332;Right=chr4:30815244-30815654
chr4	CG	SV	31101965	31102670	14	.	.	ID=3021;Type=deletion;Left=chr4:31101965-31102340+;Right=chr4:31102401-31102670+;Distance=436;DiscordantMatePairAlignments=14;LeftRepeat=L1P1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71727611 (chr4:31101965-31102401);Frequency=1.00
chr4	CG	SV	31101965	31102340	14	+	.	ID=3021;Type=deletion;Left=chr4:31101965-31102340;Right=chr4:31102401-31102670
chr4	CG	SV	31102401	31102670	14	+	.	ID=3021;Type=deletion;Left=chr4:31101965-31102340;Right=chr4:31102401-31102670
chr4	CG	SV	33523568	33524985	22	.	.	ID=3020;Type=deletion;Left=chr4:33523568-33523850+;Right=chr4:33524625-33524985+;Distance=1057;DiscordantMatePairAlignments=22;LeftRepeat=MER11C:LTR:ERVK;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66649474 (chr4:33523565-33524622);Frequency=1.00
chr4	CG	SV	33523568	33523850	22	+	.	ID=3020;Type=deletion;Left=chr4:33523568-33523850;Right=chr4:33524625-33524985
chr4	CG	SV	33524625	33524985	22	+	.	ID=3020;Type=deletion;Left=chr4:33523568-33523850;Right=chr4:33524625-33524985
chr4	CG	SV	39701448	39702958	13	.	.	ID=3018;Type=deletion;Left=chr4:39701448-39701675+;Right=chr4:39702814-39702958+;Distance=1366;DiscordantMatePairAlignments=13;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=AluSq:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs67318308 (chr4:39701310-39702676);Frequency=0.94
chr4	CG	SV	39701448	39701675	13	+	.	ID=3018;Type=deletion;Left=chr4:39701448-39701675;Right=chr4:39702814-39702958
chr4	CG	SV	39702814	39702958	13	+	.	ID=3018;Type=deletion;Left=chr4:39701448-39701675;Right=chr4:39702814-39702958
chr4	CG	SV	43446451	43447254	16	.	.	ID=3017;Type=deletion;Left=chr4:43446451-43446750+;Right=chr4:43446886-43447254+;Distance=435;DiscordantMatePairAlignments=16;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Tandem TG;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71848921 (chr4:43446562-43446872);Frequency=0.65
chr4	CG	SV	43446451	43446750	16	+	.	ID=3017;Type=deletion;Left=chr4:43446451-43446750;Right=chr4:43446886-43447254
chr4	CG	SV	43446886	43447254	16	+	.	ID=3017;Type=deletion;Left=chr4:43446451-43446750;Right=chr4:43446886-43447254
chr4	CG	SV	43626253	43627025	18	.	.	ID=3016;Type=deletion;Left=chr4:43626253-43626667+;Right=chr4:43626594-43627025+;Distance=341;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs6148417 (chr4:43626253-43626594);Frequency=1.00
chr4	CG	SV	43626253	43626667	18	+	.	ID=3016;Type=deletion;Left=chr4:43626253-43626667;Right=chr4:43626594-43627025
chr4	CG	SV	43626594	43627025	18	+	.	ID=3016;Type=deletion;Left=chr4:43626253-43626667;Right=chr4:43626594-43627025
chr4	CG	SV	57782102	57782909	61	.	.	ID=3012;Type=deletion;Left=chr4:57782102-57782623+;Right=chr4:57782501-57782909+;Distance=399;DiscordantMatePairAlignments=61;LeftRepeat=MIRb:SINE:MIR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10525076 (chr4:57782093-57782491);Frequency=1.00
chr4	CG	SV	57782102	57782623	61	+	.	ID=3012;Type=deletion;Left=chr4:57782102-57782623;Right=chr4:57782501-57782909
chr4	CG	SV	57782501	57782909	61	+	.	ID=3012;Type=deletion;Left=chr4:57782102-57782623;Right=chr4:57782501-57782909
chr4	CG	SV	57842787	57843570	31	.	.	ID=3011;Type=deletion;Left=chr4:57842787-57843276+;Right=chr4:57843113-57843570+;Distance=326;DiscordantMatePairAlignments=31;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71180070 (chr4:57842787-57843113);Frequency=0.82
chr4	CG	SV	57842787	57843276	31	+	.	ID=3011;Type=deletion;Left=chr4:57842787-57843276;Right=chr4:57843113-57843570
chr4	CG	SV	57843113	57843570	31	+	.	ID=3011;Type=deletion;Left=chr4:57842787-57843276;Right=chr4:57843113-57843570
chr4	CG	SV	59627160	59633620	78	.	.	ID=3010;Type=deletion;Left=chr4:59627160-59627565+;Right=chr4:59633202-59633620+;Distance=6042;DiscordantMatePairAlignments=78;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72460317 (chr4:59627160-59633202);Frequency=0.94
chr4	CG	SV	59627160	59627565	78	+	.	ID=3010;Type=deletion;Left=chr4:59627160-59627565;Right=chr4:59633202-59633620
chr4	CG	SV	59633202	59633620	78	+	.	ID=3010;Type=deletion;Left=chr4:59627160-59627565;Right=chr4:59633202-59633620
chr4	CG	SV	61012701	61016188	12	.	.	ID=3009;Type=deletion;Left=chr4:61012701-61012902+;Right=chr4:61015781-61016188+;Distance=3080;DiscordantMatePairAlignments=12;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1PA4:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66908185 (chr4:61012701-61015780);Frequency=0.76
chr4	CG	SV	61012701	61012902	12	+	.	ID=3009;Type=deletion;Left=chr4:61012701-61012902;Right=chr4:61015781-61016188
chr4	CG	SV	61015781	61016188	12	+	.	ID=3009;Type=deletion;Left=chr4:61012701-61012902;Right=chr4:61015781-61016188
chr4	CG	SV	79488149	79494692	141	.	.	ID=3005;Type=deletion;Left=chr4:79488149-79488586+;Right=chr4:79494224-79494692+;Distance=6075;DiscordantMatePairAlignments=141;LeftRepeat=;RightRepeat=;LeftGenes=NM_001166133:+;NM_025074:+;RightGenes=NM_001166133:+;NM_025074:+;XRef=;Frequency=1.00
chr4	CG	SV	79488149	79488586	141	+	.	ID=3005;Type=deletion;Left=chr4:79488149-79488586;Right=chr4:79494224-79494692
chr4	CG	SV	79494224	79494692	141	+	.	ID=3005;Type=deletion;Left=chr4:79488149-79488586;Right=chr4:79494224-79494692
chr4	CG	SV	81107083	81113562	79	.	.	ID=3004;Type=deletion;Left=chr4:81107083-81107564+;Right=chr4:81113128-81113562+;Distance=6045;DiscordantMatePairAlignments=79;LeftRepeat=;RightRepeat=;LeftGenes=NM_058172:-;RightGenes=NM_058172:-;XRef=rs68027105 (chr4:81107086-81113131);Frequency=0.88
chr4	CG	SV	81107083	81107564	79	+	.	ID=3004;Type=deletion;Left=chr4:81107083-81107564;Right=chr4:81113128-81113562
chr4	CG	SV	81113128	81113562	79	+	.	ID=3004;Type=deletion;Left=chr4:81107083-81107564;Right=chr4:81113128-81113562
chr4	CG	SV	86783412	86784070	15	.	.	ID=3000;Type=deletion;Left=chr4:86783412-86783922+;Right=chr4:86783743-86784070+;Distance=331;DiscordantMatePairAlignments=15;LeftRepeat=L2:LINE:L2;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=NM_001025616:+;RightGenes=NM_001025616:+;XRef=;Frequency=0.24
chr4	CG	SV	86783412	86783922	15	+	.	ID=3000;Type=deletion;Left=chr4:86783412-86783922;Right=chr4:86783743-86784070
chr4	CG	SV	86783743	86784070	15	+	.	ID=3000;Type=deletion;Left=chr4:86783412-86783922;Right=chr4:86783743-86784070
chr4	CG	SV	86879793	86880431	17	.	.	ID=2999;Type=deletion;Left=chr4:86879793-86880211+;Right=chr4:86880115-86880431+;Distance=322;DiscordantMatePairAlignments=17;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=NM_001025616:+;RightGenes=NM_001025616:+;XRef=rs10705059 (chr4:86879793-86880115);Frequency=1.00
chr4	CG	SV	86879793	86880211	17	+	.	ID=2999;Type=deletion;Left=chr4:86879793-86880211;Right=chr4:86880115-86880431
chr4	CG	SV	86880115	86880431	17	+	.	ID=2999;Type=deletion;Left=chr4:86879793-86880211;Right=chr4:86880115-86880431
chr4	CG	SV	88702912	88705818	87	.	.	ID=2997;Type=deletion;Left=chr4:88702912-88703266+;Right=chr4:88705341-88705818+;Distance=2429;DiscordantMatePairAlignments=87;LeftRepeat=;RightRepeat=L1ME3B:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66992231 (chr4:88702907-88705336);Frequency=0.65
chr4	CG	SV	88702912	88703266	87	+	.	ID=2997;Type=deletion;Left=chr4:88702912-88703266;Right=chr4:88705341-88705818
chr4	CG	SV	88705341	88705818	87	+	.	ID=2997;Type=deletion;Left=chr4:88702912-88703266;Right=chr4:88705341-88705818
chr4	CG	SV	91221006	91766481	24	.	.	ID=1154;Type=tandem-duplication;Left=chr4:91221006-91221327-;Right=chr4:91766130-91766481-;Distance=545154;DiscordantMatePairAlignments=24;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_001145065:+;NM_207491:+;XRef=;Frequency=0.00
chr4	CG	SV	91221006	91221327	24	-	.	ID=1154;Type=tandem-duplication;Left=chr4:91221006-91221327;Right=chr4:91766130-91766481
chr4	CG	SV	91766130	91766481	24	-	.	ID=1154;Type=tandem-duplication;Left=chr4:91221006-91221327;Right=chr4:91766130-91766481
chr4	CG	SV	91815821	91822376	40	.	.	ID=2993;Type=deletion;Left=chr4:91815821-91816225+;Right=chr4:91821944-91822376+;Distance=6123;DiscordantMatePairAlignments=40;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001145065:+;NM_207491:+;RightGenes=NM_001145065:+;NM_207491:+;XRef=rs68154073 (chr4:91815806-91821931);Frequency=1.00
chr4	CG	SV	91815821	91816225	40	+	.	ID=2993;Type=deletion;Left=chr4:91815821-91816225;Right=chr4:91821944-91822376
chr4	CG	SV	91821944	91822376	40	+	.	ID=2993;Type=deletion;Left=chr4:91815821-91816225;Right=chr4:91821944-91822376
chr4	CG	SV	92152881	92155521	65	.	.	ID=2990;Type=deletion;Left=chr4:92152881-92153098+;Right=chr4:92155124-92155521+;Distance=2243;DiscordantMatePairAlignments=65;LeftRepeat=L1M2:LINE:L1;RightRepeat=;LeftGenes=NM_001145065:+;RightGenes=NM_001145065:+;XRef=;Frequency=0.76
chr4	CG	SV	92152881	92153098	65	+	.	ID=2990;Type=deletion;Left=chr4:92152881-92153098;Right=chr4:92155124-92155521
chr4	CG	SV	92155124	92155521	65	+	.	ID=2990;Type=deletion;Left=chr4:92152881-92153098;Right=chr4:92155124-92155521
chr4	CG	SV	94778476	94784896	95	.	.	ID=2987;Type=deletion;Left=chr4:94778476-94778862+;Right=chr4:94784527-94784896+;Distance=6051;DiscordantMatePairAlignments=95;LeftRepeat=;RightRepeat=;LeftGenes=NM_001510:+;RightGenes=NM_001510:+;XRef=rs67415856 (chr4:94778477-94784528);Frequency=0.41
chr4	CG	SV	94778476	94778862	95	+	.	ID=2987;Type=deletion;Left=chr4:94778476-94778862;Right=chr4:94784527-94784896
chr4	CG	SV	94784527	94784896	95	+	.	ID=2987;Type=deletion;Left=chr4:94778476-94778862;Right=chr4:94784527-94784896
chr4	CG	SV	98329680	98330452	15	.	.	ID=2985;Type=deletion;Left=chr4:98329680-98330166+;Right=chr4:98330006-98330452+;Distance=326;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6148585 (chr4:98329667-98329993);Frequency=0.71
chr4	CG	SV	98329680	98330166	15	+	.	ID=2985;Type=deletion;Left=chr4:98329680-98330166;Right=chr4:98330006-98330452
chr4	CG	SV	98330006	98330452	15	+	.	ID=2985;Type=deletion;Left=chr4:98329680-98330166;Right=chr4:98330006-98330452
chr4	CG	SV	100242071	100242748	22	.	.	ID=2983;Type=deletion;Left=chr4:100242071-100242486+;Right=chr4:100242405-100242748+;Distance=334;DiscordantMatePairAlignments=22;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	100242071	100242486	22	+	.	ID=2983;Type=deletion;Left=chr4:100242071-100242486;Right=chr4:100242405-100242748
chr4	CG	SV	100242405	100242748	22	+	.	ID=2983;Type=deletion;Left=chr4:100242071-100242486;Right=chr4:100242405-100242748
chr4	CG	SV	104004615	104005459	29	.	.	ID=2981;Type=deletion;Left=chr4:104004615-104005028+;Right=chr4:104004962-104005459+;Distance=347;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=;LeftGenes=NM_181890:-;NM_181893:-;RightGenes=NM_181890:-;NM_181893:-;XRef=rs6148603 (chr4:104004614-104004961);Frequency=0.59
chr4	CG	SV	104004615	104005028	29	+	.	ID=2981;Type=deletion;Left=chr4:104004615-104005028;Right=chr4:104004962-104005459
chr4	CG	SV	104004962	104005459	29	+	.	ID=2981;Type=deletion;Left=chr4:104004615-104005028;Right=chr4:104004962-104005459
chr4	CG	SV	105113495	105114517	45	.	.	ID=2980;Type=deletion;Left=chr4:105113495-105113918+;Right=chr4:105114129-105114517+;Distance=634;DiscordantMatePairAlignments=45;LeftRepeat=HERV4_I:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71662133 (chr4:105113495-105114126);Frequency=0.94
chr4	CG	SV	105113495	105113918	45	+	.	ID=2980;Type=deletion;Left=chr4:105113495-105113918;Right=chr4:105114129-105114517
chr4	CG	SV	105114129	105114517	45	+	.	ID=2980;Type=deletion;Left=chr4:105113495-105113918;Right=chr4:105114129-105114517
chr4	CG	SV	108347267	108351648	93	.	.	ID=2978;Type=deletion;Left=chr4:108347267-108347725+;Right=chr4:108351173-108351648+;Distance=3906;DiscordantMatePairAlignments=93;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66829191 (chr4:108347277-108351183);Frequency=1.00
chr4	CG	SV	108347267	108347725	93	+	.	ID=2978;Type=deletion;Left=chr4:108347267-108347725;Right=chr4:108351173-108351648
chr4	CG	SV	108351173	108351648	93	+	.	ID=2978;Type=deletion;Left=chr4:108347267-108347725;Right=chr4:108351173-108351648
chr4	CG	SV	114205363	114206202	29	.	.	ID=2975;Type=deletion;Left=chr4:114205363-114205785+;Right=chr4:114205858-114206202+;Distance=495;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;Tandem period 33;RightRepeat=Self chain;LeftGenes=NM_001127493:+;NM_001148:+;NM_020977:+;RightGenes=NM_001127493:+;NM_001148:+;NM_020977:+;XRef=rs72075860 (chr4:114205429-114205858);Frequency=0.94
chr4	CG	SV	114205363	114205785	29	+	.	ID=2975;Type=deletion;Left=chr4:114205363-114205785;Right=chr4:114205858-114206202
chr4	CG	SV	114205858	114206202	29	+	.	ID=2975;Type=deletion;Left=chr4:114205363-114205785;Right=chr4:114205858-114206202
chr4	CG	SV	120236700	120237439	12	.	.	ID=2974;Type=deletion;Left=chr4:120236700-120237250+;Right=chr4:120237020-120237439+;Distance=320;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66829965 (chr4:120236700-120237020);Frequency=1.00
chr4	CG	SV	120236700	120237250	12	+	.	ID=2974;Type=deletion;Left=chr4:120236700-120237250;Right=chr4:120237020-120237439
chr4	CG	SV	120237020	120237439	12	+	.	ID=2974;Type=deletion;Left=chr4:120236700-120237250;Right=chr4:120237020-120237439
chr4	CG	SV	120246692	120247530	26	.	.	ID=2973;Type=deletion;Left=chr4:120246692-120247032+;Right=chr4:120247028-120247530+;Distance=336;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;RightRepeat=MLT1K:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr4	CG	SV	120246692	120247032	26	+	.	ID=2973;Type=deletion;Left=chr4:120246692-120247032;Right=chr4:120247028-120247530
chr4	CG	SV	120247028	120247530	26	+	.	ID=2973;Type=deletion;Left=chr4:120246692-120247032;Right=chr4:120247028-120247530
chr4	CG	SV	125163006	125165081	26	.	.	ID=2970;Type=deletion;Left=chr4:125163006-125163376+;Right=chr4:125164640-125165081+;Distance=1634;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68108143 (chr4:125163017-125164651);Frequency=0.53
chr4	CG	SV	125163006	125163376	26	+	.	ID=2970;Type=deletion;Left=chr4:125163006-125163376;Right=chr4:125164640-125165081
chr4	CG	SV	125164640	125165081	26	+	.	ID=2970;Type=deletion;Left=chr4:125163006-125163376;Right=chr4:125164640-125165081
chr4	CG	SV	130435955	130439462	233	.	.	ID=2969;Type=deletion;Left=chr4:130435955-130436402+;Right=chr4:130438938-130439462+;Distance=2983;DiscordantMatePairAlignments=233;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr4	CG	SV	130435955	130436402	233	+	.	ID=2969;Type=deletion;Left=chr4:130435955-130436402;Right=chr4:130438938-130439462
chr4	CG	SV	130438938	130439462	233	+	.	ID=2969;Type=deletion;Left=chr4:130435955-130436402;Right=chr4:130438938-130439462
chr4	CG	SV	135652479	135655579	34	.	.	ID=2967;Type=deletion;Left=chr4:135652479-135652759+;Right=chr4:135655151-135655579+;Distance=2672;DiscordantMatePairAlignments=34;LeftRepeat=Arthur1:DNA:Tip100;RightRepeat=L1MA9:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72144499 (chr4:135652457-135655151);Frequency=0.71
chr4	CG	SV	135652479	135652759	34	+	.	ID=2967;Type=deletion;Left=chr4:135652479-135652759;Right=chr4:135655151-135655579
chr4	CG	SV	135655151	135655579	34	+	.	ID=2967;Type=deletion;Left=chr4:135652479-135652759;Right=chr4:135655151-135655579
chr4	CG	SV	139185661	139187172	105	.	.	ID=2966;Type=deletion;Left=chr4:139185661-139186121+;Right=chr4:139186668-139187172+;Distance=1007;DiscordantMatePairAlignments=105;LeftRepeat=MER61D:LTR:ERV1;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66727003 (chr4:139185661-139186667);Frequency=0.59
chr4	CG	SV	139185661	139186121	105	+	.	ID=2966;Type=deletion;Left=chr4:139185661-139186121;Right=chr4:139186668-139187172
chr4	CG	SV	139186668	139187172	105	+	.	ID=2966;Type=deletion;Left=chr4:139185661-139186121;Right=chr4:139186668-139187172
chr4	CG	SV	146658263	146660365	56	.	.	ID=2965;Type=deletion;Left=chr4:146658263-146658644+;Right=chr4:146659907-146660365+;Distance=1644;DiscordantMatePairAlignments=56;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001003688:+;NM_005900:+;RightGenes=NM_001003688:+;NM_005900:+;XRef=rs67125785 (chr4:146658263-146659907);Frequency=0.59
chr4	CG	SV	146658263	146658644	56	+	.	ID=2965;Type=deletion;Left=chr4:146658263-146658644;Right=chr4:146659907-146660365
chr4	CG	SV	146659907	146660365	56	+	.	ID=2965;Type=deletion;Left=chr4:146658263-146658644;Right=chr4:146659907-146660365
chr4	CG	SV	152560160	152561486	182	.	.	ID=2964;Type=deletion;Left=chr4:152560160-152560630+;Right=chr4:152561007-152561486+;Distance=847;DiscordantMatePairAlignments=182;LeftRepeat=;RightRepeat=L1HS:LINE:L1;LeftGenes=NM_001109977:+;RightGenes=NM_001109977:+;XRef=rs72214776 (chr4:152560155-152561002);Frequency=0.94
chr4	CG	SV	152560160	152560630	182	+	.	ID=2964;Type=deletion;Left=chr4:152560160-152560630;Right=chr4:152561007-152561486
chr4	CG	SV	152561007	152561486	182	+	.	ID=2964;Type=deletion;Left=chr4:152560160-152560630;Right=chr4:152561007-152561486
chr4	CG	SV	153315149	153315941	15	.	.	ID=2963;Type=deletion;Left=chr4:153315149-153315581+;Right=chr4:153315748-153315941+;Distance=599;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr4	CG	SV	153315149	153315581	15	+	.	ID=2963;Type=deletion;Left=chr4:153315149-153315581;Right=chr4:153315748-153315941
chr4	CG	SV	153315748	153315941	15	+	.	ID=2963;Type=deletion;Left=chr4:153315149-153315581;Right=chr4:153315748-153315941
chr4	CG	SV	166222008	166224834	24	.	.	ID=2959;Type=deletion;Left=chr4:166222008-166222226+;Right=chr4:166224451-166224834+;Distance=2443;DiscordantMatePairAlignments=24;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_001100389:-;RightGenes=NM_001100389:-;XRef=rs71937308 (chr4:166222054-166224492);Frequency=1.00
chr4	CG	SV	166222008	166222226	24	+	.	ID=2959;Type=deletion;Left=chr4:166222008-166222226;Right=chr4:166224451-166224834
chr4	CG	SV	166224451	166224834	24	+	.	ID=2959;Type=deletion;Left=chr4:166222008-166222226;Right=chr4:166224451-166224834
chr4	CG	SV	167223766	167224740	39	.	.	ID=2958;Type=deletion;Left=chr4:167223766-167223986+;Right=chr4:167224369-167224740+;Distance=603;DiscordantMatePairAlignments=39;LeftRepeat=Self chain;RightRepeat=L1MA8:LINE:L1;Self chain;LeftGenes=NM_012464:+;RightGenes=NM_012464:+;XRef=rs72050237 (chr4:167223766-167224362);Frequency=0.76
chr4	CG	SV	167223766	167223986	39	+	.	ID=2958;Type=deletion;Left=chr4:167223766-167223986;Right=chr4:167224369-167224740
chr4	CG	SV	167224369	167224740	39	+	.	ID=2958;Type=deletion;Left=chr4:167223766-167223986;Right=chr4:167224369-167224740
chr4	CG	SV	167327553	167328253	12	.	.	ID=2957;Type=deletion;Left=chr4:167327553-167327989+;Right=chr4:167327895-167328253+;Distance=342;DiscordantMatePairAlignments=12;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10525051 (chr4:167327537-167327879);Frequency=1.00
chr4	CG	SV	167327553	167327989	12	+	.	ID=2957;Type=deletion;Left=chr4:167327553-167327989;Right=chr4:167327895-167328253
chr4	CG	SV	167327895	167328253	12	+	.	ID=2957;Type=deletion;Left=chr4:167327553-167327989;Right=chr4:167327895-167328253
chr4	CG	SV	167913623	167920170	53	.	.	ID=2956;Type=deletion;Left=chr4:167913623-167913964+;Right=chr4:167919658-167920170+;Distance=6035;DiscordantMatePairAlignments=53;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001040159:-;NM_016950:-;RightGenes=NM_001040159:-;NM_016950:-;XRef=rs71929678 (chr4:167913623-167919658);Frequency=0.88
chr4	CG	SV	167913623	167913964	53	+	.	ID=2956;Type=deletion;Left=chr4:167913623-167913964;Right=chr4:167919658-167920170
chr4	CG	SV	167919658	167920170	53	+	.	ID=2956;Type=deletion;Left=chr4:167913623-167913964;Right=chr4:167919658-167920170
chr4	CG	SV	170515039	170515880	26	.	.	ID=2955;Type=deletion;Left=chr4:170515039-170515415+;Right=chr4:170515460-170515880+;Distance=421;DiscordantMatePairAlignments=26;LeftRepeat=AluJo:SINE:Alu;RightRepeat=MER58A:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs67724482 (chr4:170515039-170515460);Frequency=0.82
chr4	CG	SV	170515039	170515415	26	+	.	ID=2955;Type=deletion;Left=chr4:170515039-170515415;Right=chr4:170515460-170515880
chr4	CG	SV	170515460	170515880	26	+	.	ID=2955;Type=deletion;Left=chr4:170515039-170515415;Right=chr4:170515460-170515880
chr4	CG	SV	173661607	173670477	31	.	.	ID=2954;Type=deletion;Left=chr4:173661607-173661928+;Right=chr4:173670095-173670477+;Distance=8488;DiscordantMatePairAlignments=31;LeftRepeat=Self chain;RightRepeat=L1PB1:LINE:L1;LeftGenes=NM_001034845:+;RightGenes=NM_001034845:+;XRef=rs67651552 (chr4:173661607-173670094);Frequency=0.94
chr4	CG	SV	173661607	173661928	31	+	.	ID=2954;Type=deletion;Left=chr4:173661607-173661928;Right=chr4:173670095-173670477
chr4	CG	SV	173670095	173670477	31	+	.	ID=2954;Type=deletion;Left=chr4:173661607-173661928;Right=chr4:173670095-173670477
chr4	CG	SV	175741511	175742358	75	.	.	ID=2953;Type=deletion;Left=chr4:175741511-175741961+;Right=chr4:175741934-175742358+;Distance=423;DiscordantMatePairAlignments=75;LeftRepeat=AluSc:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72035570 (chr4:175741516-175741934);Frequency=0.10
chr4	CG	SV	175741511	175741961	75	+	.	ID=2953;Type=deletion;Left=chr4:175741511-175741961;Right=chr4:175741934-175742358
chr4	CG	SV	175741934	175742358	75	+	.	ID=2953;Type=deletion;Left=chr4:175741511-175741961;Right=chr4:175741934-175742358
chr4	CG	SV	180300779	180301422	13	.	.	ID=2948;Type=deletion;Left=chr4:180300779-180301198+;Right=chr4:180301154-180301422+;Distance=375;DiscordantMatePairAlignments=13;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=MLT1J:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr4	CG	SV	180300779	180301198	13	+	.	ID=2948;Type=deletion;Left=chr4:180300779-180301198;Right=chr4:180301154-180301422
chr4	CG	SV	180301154	180301422	13	+	.	ID=2948;Type=deletion;Left=chr4:180300779-180301198;Right=chr4:180301154-180301422
chr4	CG	SV	181852936	182129262	40	.	.	ID=2945;Type=deletion;Left=chr4:181852936-181853249+;Right=chr4:182128860-182129262+;Distance=275924;DiscordantMatePairAlignments=40;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	181852936	181853249	40	+	.	ID=2945;Type=deletion;Left=chr4:181852936-181853249;Right=chr4:182128860-182129262
chr4	CG	SV	182128860	182129262	40	+	.	ID=2945;Type=deletion;Left=chr4:181852936-181853249;Right=chr4:182128860-182129262
chr4	CG	SV	182113790	182115712	114	.	.	ID=2946;Type=deletion;Left=chr4:182113790-182114157+;Right=chr4:182115292-182115712+;Distance=1502;DiscordantMatePairAlignments=114;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66719029 (chr4:182113780-182115282);Frequency=1.00
chr4	CG	SV	182113790	182114157	114	+	.	ID=2946;Type=deletion;Left=chr4:182113790-182114157;Right=chr4:182115292-182115712
chr4	CG	SV	182115292	182115712	114	+	.	ID=2946;Type=deletion;Left=chr4:182113790-182114157;Right=chr4:182115292-182115712
chr4	CG	SV	184494941	184495705	12	.	.	ID=2944;Type=deletion;Left=chr4:184494941-184495158+;Right=chr4:184495571-184495705+;Distance=630;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem period 42;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10704947 (chr4:184494864-184495242);Frequency=0.82
chr4	CG	SV	184494941	184495158	12	+	.	ID=2944;Type=deletion;Left=chr4:184494941-184495158;Right=chr4:184495571-184495705
chr4	CG	SV	184495571	184495705	12	+	.	ID=2944;Type=deletion;Left=chr4:184494941-184495158;Right=chr4:184495571-184495705
chr4	CG	SV	184892827	184896451	36	.	.	ID=2942;Type=deletion;Left=chr4:184892827-184893129+;Right=chr4:184895979-184896451+;Distance=3152;DiscordantMatePairAlignments=36;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71162502 (chr4:184892827-184895979);Frequency=0.35
chr4	CG	SV	184892827	184893129	36	+	.	ID=2942;Type=deletion;Left=chr4:184892827-184893129;Right=chr4:184895979-184896451
chr4	CG	SV	184895979	184896451	36	+	.	ID=2942;Type=deletion;Left=chr4:184892827-184893129;Right=chr4:184895979-184896451
chr4	CG	SV	184911427	184913028	28	.	.	ID=2941;Type=deletion;Left=chr4:184911427-184911900+;Right=chr4:184912887-184913028+;Distance=1460;DiscordantMatePairAlignments=28;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr4	CG	SV	184911427	184911900	28	+	.	ID=2941;Type=deletion;Left=chr4:184911427-184911900;Right=chr4:184912887-184913028
chr4	CG	SV	184912887	184913028	28	+	.	ID=2941;Type=deletion;Left=chr4:184911427-184911900;Right=chr4:184912887-184913028
chr4	CG	SV	185741948	185964746	43	.	.	ID=445;Type=probable-inversion;Left=chr4:185741948-185742332-;Right=chr4:185964343-185964746+;Distance=222011;DiscordantMatePairAlignments=43;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=NM_001995:-;XRef=;Frequency=0.00
chr4	CG	SV	185741948	185742332	43	-	.	ID=445;Type=probable-inversion;Left=chr4:185741948-185742332;Right=chr4:185964343-185964746
chr4	CG	SV	185964343	185964746	43	-	.	ID=445;Type=probable-inversion;Left=chr4:185741948-185742332;Right=chr4:185964343-185964746
chr4	CG	SV	185902776	185903478	15	.	.	ID=2939;Type=deletion;Left=chr4:185902776-185903188+;Right=chr4:185903094-185903478+;Distance=318;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=MER50:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs67402103 (chr4:185902765-185903083);Frequency=1.00
chr4	CG	SV	185902776	185903188	15	+	.	ID=2939;Type=deletion;Left=chr4:185902776-185903188;Right=chr4:185903094-185903478
chr4	CG	SV	185903094	185903478	15	+	.	ID=2939;Type=deletion;Left=chr4:185902776-185903188;Right=chr4:185903094-185903478
chr4	CG	SV	186576504	186577868	26	.	.	ID=2937;Type=deletion;Left=chr4:186576504-186576798+;Right=chr4:186577558-186577868+;Distance=1054;DiscordantMatePairAlignments=26;LeftRepeat=MIR3:SINE:MIR;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_018359:-;NR_028085:-;RightGenes=NM_018359:-;NR_028085:-;XRef=;Frequency=0.00
chr4	CG	SV	186576504	186576798	26	+	.	ID=2937;Type=deletion;Left=chr4:186576504-186576798;Right=chr4:186577558-186577868
chr4	CG	SV	186577558	186577868	26	+	.	ID=2937;Type=deletion;Left=chr4:186576504-186576798;Right=chr4:186577558-186577868
chr4	CG	SV	186585901	186586371	12	.	.	ID=2936;Type=deletion;Left=chr4:186585901-186586369+;Right=chr4:186586228-186586371+;Distance=327;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr4	CG	SV	186585901	186586369	12	+	.	ID=2936;Type=deletion;Left=chr4:186585901-186586369;Right=chr4:186586228-186586371
chr4	CG	SV	186586228	186586371	12	+	.	ID=2936;Type=deletion;Left=chr4:186585901-186586369;Right=chr4:186586228-186586371
chr4	CG	SV	186678631	186681503	155	.	.	ID=2935;Type=deletion;Left=chr4:186678631-186679111+;Right=chr4:186681069-186681503+;Distance=2438;DiscordantMatePairAlignments=155;LeftRepeat=;RightRepeat=;LeftGenes=NM_001114107:-;NM_014476:-;RightGenes=NM_001114107:-;NM_014476:-;XRef=;Frequency=0.94
chr4	CG	SV	186678631	186679111	155	+	.	ID=2935;Type=deletion;Left=chr4:186678631-186679111;Right=chr4:186681069-186681503
chr4	CG	SV	186681069	186681503	155	+	.	ID=2935;Type=deletion;Left=chr4:186678631-186679111;Right=chr4:186681069-186681503
chr4	CG	SV	187330481	187335454	25	.	.	ID=2934;Type=deletion;Left=chr4:187330481-187330701+;Right=chr4:187335231-187335454+;Distance=4750;DiscordantMatePairAlignments=25;LeftRepeat=;RightRepeat=;LeftGenes=NM_001006655:+;NM_015398:+;RightGenes=;XRef=;Frequency=0.88
chr4	CG	SV	187330481	187330701	25	+	.	ID=2934;Type=deletion;Left=chr4:187330481-187330701;Right=chr4:187335231-187335454
chr4	CG	SV	187335231	187335454	25	+	.	ID=2934;Type=deletion;Left=chr4:187330481-187330701;Right=chr4:187335231-187335454
chr4	CG	SV	190295008	190301560	29	.	.	ID=2932;Type=deletion;Left=chr4:190295008-190295425+;Right=chr4:190301282-190301560+;Distance=6274;DiscordantMatePairAlignments=29;LeftRepeat=L1P1:LINE:L1;RightRepeat=THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67851464 (chr4:190294992-190301266);Frequency=0.94
chr4	CG	SV	190295008	190295425	29	+	.	ID=2932;Type=deletion;Left=chr4:190295008-190295425;Right=chr4:190301282-190301560
chr4	CG	SV	190301282	190301560	29	+	.	ID=2932;Type=deletion;Left=chr4:190295008-190295425;Right=chr4:190301282-190301560
chr4	CG	SV	190342554	190343558	80	.	.	ID=2931;Type=deletion;Left=chr4:190342554-190343004+;Right=chr4:190343307-190343558+;Distance=753;DiscordantMatePairAlignments=80;LeftRepeat=Self chain;Tandem period 161;Tandem period 54;RightRepeat=Self chain;Tandem period 161;Tandem period 54;LeftGenes=;RightGenes=;XRef=rs66954860 (chr4:190342578-190343277);Frequency=1.00
chr4	CG	SV	190342554	190343004	80	+	.	ID=2931;Type=deletion;Left=chr4:190342554-190343004;Right=chr4:190343307-190343558
chr4	CG	SV	190343307	190343558	80	+	.	ID=2931;Type=deletion;Left=chr4:190342554-190343004;Right=chr4:190343307-190343558
chr4	CG	SV	190528425	190529234	18	.	.	ID=2930;Type=deletion;Left=chr4:190528425-190528891+;Right=chr4:190528744-190529234+;Distance=319;DiscordantMatePairAlignments=18;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10523783 (chr4:190528412-190528731);Frequency=1.00
chr4	CG	SV	190528425	190528891	18	+	.	ID=2930;Type=deletion;Left=chr4:190528425-190528891;Right=chr4:190528744-190529234
chr4	CG	SV	190528744	190529234	18	+	.	ID=2930;Type=deletion;Left=chr4:190528425-190528891;Right=chr4:190528744-190529234
chr4	CG	SV	190772252	190772501	19	.	.	ID=1148;Type=complex;Left=chr4:190772252-190772378-;Right=chr4:190772427-190772501-;Distance=123;DiscordantMatePairAlignments=19;LeftRepeat=SegDup;Self chain;RightRepeat=LTR12C:LTR:ERV1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr4	CG	SV	190772252	190772378	19	-	.	ID=1148;Type=complex;Left=chr4:190772252-190772378;Right=chr4:190772427-190772501
chr4	CG	SV	190772427	190772501	19	-	.	ID=1148;Type=complex;Left=chr4:190772252-190772378;Right=chr4:190772427-190772501
chr4	CG	SV	190772499	190775499	13	.	.	ID=2928;Type=complex;Left=chr4:190772499-190772570+;Right=chr4:190775357-190775499+;Distance=2858;DiscordantMatePairAlignments=13;LeftRepeat=SegDup;Self chain;RightRepeat=LTR12C:LTR:ERV1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190772499	190772570	13	+	.	ID=2928;Type=complex;Left=chr4:190772499-190772570;Right=chr4:190775357-190775499
chr4	CG	SV	190775357	190775499	13	+	.	ID=2928;Type=complex;Left=chr4:190772499-190772570;Right=chr4:190775357-190775499
chr4	CG	SV	190822807	190850110	288	.	.	ID=3962;Type=probable-inversion;Left=chr4:190822807-190823305+;Right=chr4:190849646-190850110-;Distance=27303;DiscordantMatePairAlignments=288;LeftRepeat=Self chain;RightRepeat=LTR12C:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190822807	190823305	288	+	.	ID=3962;Type=probable-inversion;Left=chr4:190822807-190823305;Right=chr4:190849646-190850110
chr4	CG	SV	190849646	190850110	288	+	.	ID=3962;Type=probable-inversion;Left=chr4:190822807-190823305;Right=chr4:190849646-190850110
chr4	CG	SV	190844039	190847609	10	.	.	ID=2927;Type=deletion;Left=chr4:190844039-190844308+;Right=chr4:190847295-190847609+;Distance=3256;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 110;Tandem period 57;RightRepeat=Self chain;Tandem period 53;LeftGenes=;RightGenes=;XRef=rs71647284 (chr4:190843933-190847246);Frequency=1.00
chr4	CG	SV	190844039	190844308	10	+	.	ID=2927;Type=deletion;Left=chr4:190844039-190844308;Right=chr4:190847295-190847609
chr4	CG	SV	190847295	190847609	10	+	.	ID=2927;Type=deletion;Left=chr4:190844039-190844308;Right=chr4:190847295-190847609
chr4	CG	SV	190861634	190862338	13	.	.	ID=2926;Type=deletion;Left=chr4:190861634-190862074+;Right=chr4:190861981-190862338+;Distance=347;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6148861 (chr4:190861622-190861969);Frequency=1.00
chr4	CG	SV	190861634	190862074	13	+	.	ID=2926;Type=deletion;Left=chr4:190861634-190862074;Right=chr4:190861981-190862338
chr4	CG	SV	190861981	190862338	13	+	.	ID=2926;Type=deletion;Left=chr4:190861634-190862074;Right=chr4:190861981-190862338
chr4	CG	SV	190893451	190894679	13	.	.	ID=2924;Type=deletion;Left=chr4:190893451-190893748+;Right=chr4:190894526-190894679+;Distance=1075;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 105;Tandem period 35;Tandem period 70;RightRepeat=Self chain;Tandem period 105;Tandem period 35;Tandem period 70;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190893451	190893748	13	+	.	ID=2924;Type=deletion;Left=chr4:190893451-190893748;Right=chr4:190894526-190894679
chr4	CG	SV	190894526	190894679	13	+	.	ID=2924;Type=deletion;Left=chr4:190893451-190893748;Right=chr4:190894526-190894679
chr4	CG	SV	190899926	190901130	69	.	.	ID=2923;Type=deletion;Left=chr4:190899926-190900273+;Right=chr4:190900721-190901130+;Distance=795;DiscordantMatePairAlignments=69;LeftRepeat=L1PBa:LINE:L1;Self chain;RightRepeat=L1PBa:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190899926	190900273	69	+	.	ID=2923;Type=deletion;Left=chr4:190899926-190900273;Right=chr4:190900721-190901130
chr4	CG	SV	190900721	190901130	69	+	.	ID=2923;Type=deletion;Left=chr4:190899926-190900273;Right=chr4:190900721-190901130
chr4	CG	SV	191035650	191038017	18	.	.	ID=2922;Type=deletion;Left=chr4:191035650-191035925+;Right=chr4:191037595-191038017+;Distance=1945;DiscordantMatePairAlignments=18;LeftRepeat=L1PA4:LINE:L1;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	191035650	191035925	18	+	.	ID=2922;Type=deletion;Left=chr4:191035650-191035925;Right=chr4:191037595-191038017
chr4	CG	SV	191037595	191038017	18	+	.	ID=2922;Type=deletion;Left=chr4:191035650-191035925;Right=chr4:191037595-191038017
chr4	CG	SV	191179460	191179790	12	-	.	ID=1005;Type=interchromosomal;Left=chr4:191179460-191179790-;Right=chr18:102272-102542-;Distance=;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	102272	102542	12	-	.	ID=1005;Type=interchromosomal;Left=chr4:191179460-191179790-;Right=chr18:102272-102542-;Distance=;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	539943	540821	69	.	.	ID=2921;Type=deletion;Left=chr5:539943-540245+;Right=chr5:540685-540821+;Distance=742;DiscordantMatePairAlignments=69;LeftRepeat=Self chain;RightRepeat=(CACCG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 15;Tandem period 68;LeftGenes=NM_004174:-;RightGenes=NM_004174:-;XRef=rs67969321 (chr5:540079-540691);Frequency=0.88
chr5	CG	SV	539943	540245	69	+	.	ID=2921;Type=deletion;Left=chr5:539943-540245;Right=chr5:540685-540821
chr5	CG	SV	540685	540821	69	+	.	ID=2921;Type=deletion;Left=chr5:539943-540245;Right=chr5:540685-540821
chr5	CG	SV	721126	721735	16	.	.	ID=2920;Type=deletion;Left=chr5:721126-721470+;Right=chr5:721608-721735+;Distance=482;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 289;Tandem period 48;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=NM_007030:-;RightGenes=NM_007030:-;XRef=rs70955282 (chr5:720962-721299);Frequency=0.82
chr5	CG	SV	721126	721470	16	+	.	ID=2920;Type=deletion;Left=chr5:721126-721470;Right=chr5:721608-721735
chr5	CG	SV	721608	721735	16	+	.	ID=2920;Type=deletion;Left=chr5:721126-721470;Right=chr5:721608-721735
chr5	CG	SV	1114271	1114795	11	.	.	ID=2919;Type=deletion;Left=chr5:1114271-1114726+;Right=chr5:1114721-1114795+;Distance=450;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 126;Tandem period 162;Tandem period 36;Tandem period 90;RightRepeat=Self chain;LeftGenes=NM_006598:-;RightGenes=NM_006598:-;XRef=;Frequency=0.76
chr5	CG	SV	1114271	1114726	11	+	.	ID=2919;Type=deletion;Left=chr5:1114271-1114726;Right=chr5:1114721-1114795
chr5	CG	SV	1114721	1114795	11	+	.	ID=2919;Type=deletion;Left=chr5:1114271-1114726;Right=chr5:1114721-1114795
chr5	CG	SV	1231294	1234152	50	.	.	ID=2918;Type=deletion;Left=chr5:1231294-1231634+;Right=chr5:1233733-1234152+;Distance=2439;DiscordantMatePairAlignments=50;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs68151484 (chr5:1231294-1233733);Frequency=0.71
chr5	CG	SV	1231294	1231634	50	+	.	ID=2918;Type=deletion;Left=chr5:1231294-1231634;Right=chr5:1233733-1234152
chr5	CG	SV	1233733	1234152	50	+	.	ID=2918;Type=deletion;Left=chr5:1231294-1231634;Right=chr5:1233733-1234152
chr5	CG	SV	1716820	1717684	26	.	.	ID=2916;Type=deletion;Left=chr5:1716820-1717145+;Right=chr5:1717352-1717684+;Distance=532;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66494513 (chr5:1716815-1717347);Frequency=0.82
chr5	CG	SV	1716820	1717145	26	+	.	ID=2916;Type=deletion;Left=chr5:1716820-1717145;Right=chr5:1717352-1717684
chr5	CG	SV	1717352	1717684	26	+	.	ID=2916;Type=deletion;Left=chr5:1716820-1717145;Right=chr5:1717352-1717684
chr5	CG	SV	1977591	1978641	49	.	.	ID=2915;Type=deletion;Left=chr5:1977591-1978068+;Right=chr5:1978203-1978641+;Distance=612;DiscordantMatePairAlignments=49;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72120772 (chr5:1977590-1978202);Frequency=0.94
chr5	CG	SV	1977591	1978068	49	+	.	ID=2915;Type=deletion;Left=chr5:1977591-1978068;Right=chr5:1978203-1978641
chr5	CG	SV	1978203	1978641	49	+	.	ID=2915;Type=deletion;Left=chr5:1977591-1978068;Right=chr5:1978203-1978641
chr5	CG	SV	2021407	2024713	21	.	.	ID=2914;Type=deletion;Left=chr5:2021407-2021851+;Right=chr5:2024595-2024713+;Distance=3188;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71809671 (chr5:2021413-2024601);Frequency=1.00
chr5	CG	SV	2021407	2021851	21	+	.	ID=2914;Type=deletion;Left=chr5:2021407-2021851;Right=chr5:2024595-2024713
chr5	CG	SV	2024595	2024713	21	+	.	ID=2914;Type=deletion;Left=chr5:2021407-2021851;Right=chr5:2024595-2024713
chr5	CG	SV	3555327	3556075	11	.	.	ID=2912;Type=deletion;Left=chr5:3555327-3555753+;Right=chr5:3555655-3556075+;Distance=328;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70947987 (chr5:3555327-3555655);Frequency=1.00
chr5	CG	SV	3555327	3555753	11	+	.	ID=2912;Type=deletion;Left=chr5:3555327-3555753;Right=chr5:3555655-3556075
chr5	CG	SV	3555655	3556075	11	+	.	ID=2912;Type=deletion;Left=chr5:3555327-3555753;Right=chr5:3555655-3556075
chr5	CG	SV	9464774	9465489	12	.	.	ID=2910;Type=deletion;Left=chr5:9464774-9465266+;Right=chr5:9465088-9465489+;Distance=314;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_003966:-;RightGenes=NM_003966:-;XRef=rs10530022 (chr5:9464760-9465074);Frequency=1.00
chr5	CG	SV	9464774	9465266	12	+	.	ID=2910;Type=deletion;Left=chr5:9464774-9465266;Right=chr5:9465088-9465489
chr5	CG	SV	9465088	9465489	12	+	.	ID=2910;Type=deletion;Left=chr5:9464774-9465266;Right=chr5:9465088-9465489
chr5	CG	SV	10692157	10693546	51	.	.	ID=2908;Type=deletion;Left=chr5:10692157-10692602+;Right=chr5:10693273-10693546+;Distance=1116;DiscordantMatePairAlignments=51;LeftRepeat=(CGCGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 31;RightRepeat=Self chain;Tandem period 31;LeftGenes=NM_001164440:+;RightGenes=NM_001164440:+;XRef=;Frequency=0.59
chr5	CG	SV	10692157	10692602	51	+	.	ID=2908;Type=deletion;Left=chr5:10692157-10692602;Right=chr5:10693273-10693546
chr5	CG	SV	10693273	10693546	51	+	.	ID=2908;Type=deletion;Left=chr5:10692157-10692602;Right=chr5:10693273-10693546
chr5	CG	SV	13469604	13476298	141	.	.	ID=2905;Type=deletion;Left=chr5:13469604-13470054+;Right=chr5:13475866-13476298+;Distance=6262;DiscordantMatePairAlignments=141;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr5	CG	SV	13469604	13470054	141	+	.	ID=2905;Type=deletion;Left=chr5:13469604-13470054;Right=chr5:13475866-13476298
chr5	CG	SV	13475866	13476298	141	+	.	ID=2905;Type=deletion;Left=chr5:13469604-13470054;Right=chr5:13475866-13476298
chr5	CG	SV	13948092	13948837	11	.	.	ID=2904;Type=deletion;Left=chr5:13948092-13948481+;Right=chr5:13948389-13948837+;Distance=297;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_001369:-;RightGenes=NM_001369:-;XRef=rs70948002 (chr5:13948092-13948389);Frequency=1.00
chr5	CG	SV	13948092	13948481	11	+	.	ID=2904;Type=deletion;Left=chr5:13948092-13948481;Right=chr5:13948389-13948837
chr5	CG	SV	13948389	13948837	11	+	.	ID=2904;Type=deletion;Left=chr5:13948092-13948481;Right=chr5:13948389-13948837
chr5	CG	SV	16184956	16230925	54	.	.	ID=1142;Type=tandem-duplication;Left=chr5:16184956-16185352-;Right=chr5:16230593-16230925-;Distance=45573;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_001102562:-;RightGenes=NM_001102562:-;XRef=;Frequency=0.00
chr5	CG	SV	16184956	16185352	54	-	.	ID=1142;Type=tandem-duplication;Left=chr5:16184956-16185352;Right=chr5:16230593-16230925
chr5	CG	SV	16230593	16230925	54	-	.	ID=1142;Type=tandem-duplication;Left=chr5:16184956-16185352;Right=chr5:16230593-16230925
chr5	CG	SV	24463678	24464671	75	.	.	ID=2899;Type=deletion;Left=chr5:24463678-24464081+;Right=chr5:24464258-24464671+;Distance=580;DiscordantMatePairAlignments=75;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=ERVL-B4:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	24463678	24464081	75	+	.	ID=2899;Type=deletion;Left=chr5:24463678-24464081;Right=chr5:24464258-24464671
chr5	CG	SV	24464258	24464671	75	+	.	ID=2899;Type=deletion;Left=chr5:24463678-24464081;Right=chr5:24464258-24464671
chr5	CG	SV	29105074	29105382	18	.	.	ID=3635;Type=probable-inversion;Left=chr5:29105074-29105472+;Right=chr5:29105109-29105382-;Distance=308;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=THE1-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr5	CG	SV	29105074	29105472	18	+	.	ID=3635;Type=probable-inversion;Left=chr5:29105074-29105472;Right=chr5:29105109-29105382
chr5	CG	SV	29105109	29105382	18	+	.	ID=3635;Type=probable-inversion;Left=chr5:29105074-29105472;Right=chr5:29105109-29105382
chr5	CG	SV	31713198	31713913	10	.	.	ID=2895;Type=deletion;Left=chr5:31713198-31713646+;Right=chr5:31713519-31713913+;Distance=321;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L1ME1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs70950612 (chr5:31713198-31713519);Frequency=1.00
chr5	CG	SV	31713198	31713646	10	+	.	ID=2895;Type=deletion;Left=chr5:31713198-31713646;Right=chr5:31713519-31713913
chr5	CG	SV	31713519	31713913	10	+	.	ID=2895;Type=deletion;Left=chr5:31713198-31713646;Right=chr5:31713519-31713913
chr5	CG	SV	35226907	35227650	10	.	.	ID=2893;Type=deletion;Left=chr5:35226907-35227315+;Right=chr5:35227244-35227650+;Distance=337;DiscordantMatePairAlignments=10;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_000949:-;RightGenes=NM_000949:-;XRef=rs34282720 (chr5:35226907-35227244);Frequency=0.71
chr5	CG	SV	35226907	35227315	10	+	.	ID=2893;Type=deletion;Left=chr5:35226907-35227315;Right=chr5:35227244-35227650
chr5	CG	SV	35227244	35227650	10	+	.	ID=2893;Type=deletion;Left=chr5:35226907-35227315;Right=chr5:35227244-35227650
chr5	CG	SV	52267545	52268273	12	.	.	ID=2889;Type=deletion;Left=chr5:52267545-52267915+;Right=chr5:52267878-52268273+;Distance=333;DiscordantMatePairAlignments=12;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_181501:+;RightGenes=NM_181501:+;XRef=rs35347024 (chr5:52267545-52267878);Frequency=1.00
chr5	CG	SV	52267545	52267915	12	+	.	ID=2889;Type=deletion;Left=chr5:52267545-52267915;Right=chr5:52267878-52268273
chr5	CG	SV	52267878	52268273	12	+	.	ID=2889;Type=deletion;Left=chr5:52267545-52267915;Right=chr5:52267878-52268273
chr5	CG	SV	53158520	53161242	12	.	.	ID=3634;Type=probable-inversion;Left=chr5:53158520-53158666+;Right=chr5:53160948-53161242-;Distance=2722;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr5	CG	SV	53158520	53158666	12	+	.	ID=3634;Type=probable-inversion;Left=chr5:53158520-53158666;Right=chr5:53160948-53161242
chr5	CG	SV	53160948	53161242	12	+	.	ID=3634;Type=probable-inversion;Left=chr5:53158520-53158666;Right=chr5:53160948-53161242
chr5	CG	SV	53212698	53213457	12	.	.	ID=2888;Type=deletion;Left=chr5:53212698-53213057+;Right=chr5:53213003-53213457+;Distance=305;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66590352 (chr5:53212698-53213003);Frequency=1.00
chr5	CG	SV	53212698	53213057	12	+	.	ID=2888;Type=deletion;Left=chr5:53212698-53213057;Right=chr5:53213003-53213457
chr5	CG	SV	53213003	53213457	12	+	.	ID=2888;Type=deletion;Left=chr5:53212698-53213057;Right=chr5:53213003-53213457
chr5	CG	SV	57359235	57369822	23	.	.	ID=2886;Type=deletion;Left=chr5:57359235-57359686+;Right=chr5:57369537-57369822+;Distance=10302;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr5	CG	SV	57359235	57359686	23	+	.	ID=2886;Type=deletion;Left=chr5:57359235-57359686;Right=chr5:57369537-57369822
chr5	CG	SV	57369537	57369822	23	+	.	ID=2886;Type=deletion;Left=chr5:57359235-57359686;Right=chr5:57369537-57369822
chr5	CG	SV	57715758	57722264	46	.	.	ID=2885;Type=deletion;Left=chr5:57715758-57716153+;Right=chr5:57721867-57722264+;Distance=6109;DiscordantMatePairAlignments=46;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67036290 (chr5:57715758-57721867);Frequency=1.00
chr5	CG	SV	57715758	57716153	46	+	.	ID=2885;Type=deletion;Left=chr5:57715758-57716153;Right=chr5:57721867-57722264
chr5	CG	SV	57721867	57722264	46	+	.	ID=2885;Type=deletion;Left=chr5:57715758-57716153;Right=chr5:57721867-57722264
chr5	CG	SV	58471751	58568430	35	.	.	ID=304;Type=probable-inversion;Left=chr5:58471751-58472099-;Right=chr5:58568016-58568430+;Distance=95917;DiscordantMatePairAlignments=35;LeftRepeat=;RightRepeat=MER5A:DNA:MER1_type;LeftGenes=NM_001104631:-;NM_001165899:-;NM_006203:-;RightGenes=NM_001104631:-;NM_001165899:-;NM_006203:-;XRef=;Frequency=0.00
chr5	CG	SV	58471751	58472099	35	-	.	ID=304;Type=probable-inversion;Left=chr5:58471751-58472099;Right=chr5:58568016-58568430
chr5	CG	SV	58568016	58568430	35	-	.	ID=304;Type=probable-inversion;Left=chr5:58471751-58472099;Right=chr5:58568016-58568430
chr5	CG	SV	58550632	59365648	20	.	.	ID=3633;Type=probable-inversion;Left=chr5:58550632-58551017+;Right=chr5:59365404-59365648-;Distance=815016;DiscordantMatePairAlignments=20;LeftRepeat=L1PA2:LINE:L1;RightRepeat=;LeftGenes=NM_001104631:-;NM_001165899:-;NM_006203:-;RightGenes=NM_001165899:-;XRef=;Frequency=0.00
chr5	CG	SV	58550632	58551017	20	+	.	ID=3633;Type=probable-inversion;Left=chr5:58550632-58551017;Right=chr5:59365404-59365648
chr5	CG	SV	59365404	59365648	20	+	.	ID=3633;Type=probable-inversion;Left=chr5:58550632-58551017;Right=chr5:59365404-59365648
chr5	CG	SV	60037466	60039823	86	.	.	ID=2883;Type=deletion;Left=chr5:60037466-60037842+;Right=chr5:60039427-60039823+;Distance=1961;DiscordantMatePairAlignments=86;LeftRepeat=MLT1E3:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67780732 (chr5:60037461-60039422);Frequency=0.88
chr5	CG	SV	60037466	60037842	86	+	.	ID=2883;Type=deletion;Left=chr5:60037466-60037842;Right=chr5:60039427-60039823
chr5	CG	SV	60039427	60039823	86	+	.	ID=2883;Type=deletion;Left=chr5:60037466-60037842;Right=chr5:60039427-60039823
chr5	CG	SV	65063855	65066570	68	.	.	ID=2881;Type=deletion;Left=chr5:65063855-65064110+;Right=chr5:65066152-65066570+;Distance=2297;DiscordantMatePairAlignments=68;LeftRepeat=SegDup;Self chain;RightRepeat=;LeftGenes=NM_020726:+;RightGenes=NM_020726:+;XRef=rs71731346 (chr5:65063855-65066152);Frequency=0.65
chr5	CG	SV	65063855	65064110	68	+	.	ID=2881;Type=deletion;Left=chr5:65063855-65064110;Right=chr5:65066152-65066570
chr5	CG	SV	65066152	65066570	68	+	.	ID=2881;Type=deletion;Left=chr5:65063855-65064110;Right=chr5:65066152-65066570
chr5	CG	SV	73684752	73685450	15	.	.	ID=2877;Type=deletion;Left=chr5:73684752-73685220+;Right=chr5:73685070-73685450+;Distance=318;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs34317652 (chr5:73684741-73685059);Frequency=1.00
chr5	CG	SV	73684752	73685220	15	+	.	ID=2877;Type=deletion;Left=chr5:73684752-73685220;Right=chr5:73685070-73685450
chr5	CG	SV	73685070	73685450	15	+	.	ID=2877;Type=deletion;Left=chr5:73684752-73685220;Right=chr5:73685070-73685450
chr5	CG	SV	78145555	78148127	20	.	.	ID=2771;Type=deletion;Left=chr5:78145555-78145854+;Right=chr5:78147626-78148127+;Distance=2071;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=;LeftGenes=NM_000046:-;RightGenes=NM_000046:-;NM_198709:-;XRef=rs72356644 (chr5:78145555-78147626);Frequency=0.35
chr5	CG	SV	78145555	78145854	20	+	.	ID=2771;Type=deletion;Left=chr5:78145555-78145854;Right=chr5:78147626-78148127
chr5	CG	SV	78147626	78148127	20	+	.	ID=2771;Type=deletion;Left=chr5:78145555-78145854;Right=chr5:78147626-78148127
chr5	CG	SV	80075137	80075754	11	.	.	ID=2768;Type=deletion;Left=chr5:80075137-80075599+;Right=chr5:80075446-80075754+;Distance=309;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_002439:+;RightGenes=NM_002439:+;XRef=;Frequency=0.88
chr5	CG	SV	80075137	80075599	11	+	.	ID=2768;Type=deletion;Left=chr5:80075137-80075599;Right=chr5:80075446-80075754
chr5	CG	SV	80075446	80075754	11	+	.	ID=2768;Type=deletion;Left=chr5:80075137-80075599;Right=chr5:80075446-80075754
chr5	CG	SV	81218246	81219045	23	.	.	ID=2767;Type=deletion;Left=chr5:81218246-81218550+;Right=chr5:81218588-81219045+;Distance=342;DiscordantMatePairAlignments=23;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10529476 (chr5:81218246-81218588);Frequency=0.94
chr5	CG	SV	81218246	81218550	23	+	.	ID=2767;Type=deletion;Left=chr5:81218246-81218550;Right=chr5:81218588-81219045
chr5	CG	SV	81218588	81219045	23	+	.	ID=2767;Type=deletion;Left=chr5:81218246-81218550;Right=chr5:81218588-81219045
chr5	CG	SV	82941831	82942613	11	.	.	ID=2765;Type=deletion;Left=chr5:82941831-82942121+;Right=chr5:82942150-82942613+;Distance=319;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68156380 (chr5:82941814-82942133);Frequency=0.59
chr5	CG	SV	82941831	82942121	11	+	.	ID=2765;Type=deletion;Left=chr5:82941831-82942121;Right=chr5:82942150-82942613
chr5	CG	SV	82942150	82942613	11	+	.	ID=2765;Type=deletion;Left=chr5:82941831-82942121;Right=chr5:82942150-82942613
chr5	CG	SV	88067785	88068624	27	.	.	ID=2763;Type=deletion;Left=chr5:88067785-88068207+;Right=chr5:88068115-88068624+;Distance=330;DiscordantMatePairAlignments=27;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001131005:-;NM_002397:-;RightGenes=NM_001131005:-;NM_002397:-;XRef=rs67676573 (chr5:88067785-88068115);Frequency=1.00
chr5	CG	SV	88067785	88068207	27	+	.	ID=2763;Type=deletion;Left=chr5:88067785-88068207;Right=chr5:88068115-88068624
chr5	CG	SV	88068115	88068624	27	+	.	ID=2763;Type=deletion;Left=chr5:88067785-88068207;Right=chr5:88068115-88068624
chr5	CG	SV	90535531	90538289	74	.	.	ID=2759;Type=deletion;Left=chr5:90535531-90535910+;Right=chr5:90537854-90538289+;Distance=2323;DiscordantMatePairAlignments=74;LeftRepeat=L1ME2:LINE:L1;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=;RightGenes=;XRef=rs72404559 (chr5:90535531-90537854);Frequency=1.00
chr5	CG	SV	90535531	90535910	74	+	.	ID=2759;Type=deletion;Left=chr5:90535531-90535910;Right=chr5:90537854-90538289
chr5	CG	SV	90537854	90538289	74	+	.	ID=2759;Type=deletion;Left=chr5:90535531-90535910;Right=chr5:90537854-90538289
chr5	CG	SV	91151582	91172716	39	.	.	ID=3631;Type=probable-inversion;Left=chr5:91151582-91152036+;Right=chr5:91172315-91172716-;Distance=21134;DiscordantMatePairAlignments=39;LeftRepeat=MLT1J:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	91151582	91152036	39	+	.	ID=3631;Type=probable-inversion;Left=chr5:91151582-91152036;Right=chr5:91172315-91172716
chr5	CG	SV	91172315	91172716	39	+	.	ID=3631;Type=probable-inversion;Left=chr5:91151582-91152036;Right=chr5:91172315-91172716
chr5	CG	SV	92857497	92857780	31	+	.	ID=1787;Type=interchromosomal;Left=chr5:92857497-92857780+;Right=chrX:10023488-10023880+;Distance=;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NR_015369:-;NR_021491:-;RightGenes=NM_015691:+;XRef=;Frequency=0.00
chrX	CG	SV	10023488	10023880	31	+	.	ID=1787;Type=interchromosomal;Left=chr5:92857497-92857780+;Right=chrX:10023488-10023880+;Distance=;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NR_015369:-;NR_021491:-;RightGenes=NM_015691:+;XRef=;Frequency=0.00
chr5	CG	SV	93735447	93739097	56	.	.	ID=301;Type=probable-inversion;Left=chr5:93735447-93735869-;Right=chr5:93738713-93739097+;Distance=2844;DiscordantMatePairAlignments=56;LeftRepeat=;RightRepeat=;LeftGenes=NM_001145678:-;RightGenes=NM_001145678:-;XRef=;Frequency=0.00
chr5	CG	SV	93735447	93735869	56	-	.	ID=301;Type=probable-inversion;Left=chr5:93735447-93735869;Right=chr5:93738713-93739097
chr5	CG	SV	93738713	93739097	56	-	.	ID=301;Type=probable-inversion;Left=chr5:93735447-93735869;Right=chr5:93738713-93739097
chr5	CG	SV	94135389	94136239	11	.	.	ID=2757;Type=deletion;Left=chr5:94135389-94135846+;Right=chr5:94135718-94136239+;Distance=329;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=MLT1E3:LTR:MaLR;LeftGenes=NM_001002796:-;NM_024717:-;RightGenes=NM_001002796:-;NM_024717:-;XRef=;Frequency=0.88
chr5	CG	SV	94135389	94135846	11	+	.	ID=2757;Type=deletion;Left=chr5:94135389-94135846;Right=chr5:94135718-94136239
chr5	CG	SV	94135718	94136239	11	+	.	ID=2757;Type=deletion;Left=chr5:94135389-94135846;Right=chr5:94135718-94136239
chr5	CG	SV	95369082	95369917	26	.	.	ID=2756;Type=deletion;Left=chr5:95369082-95369466+;Right=chr5:95369436-95369917+;Distance=354;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs6149125 (chr5:95369082-95369436);Frequency=1.00
chr5	CG	SV	95369082	95369466	26	+	.	ID=2756;Type=deletion;Left=chr5:95369082-95369466;Right=chr5:95369436-95369917
chr5	CG	SV	95369436	95369917	26	+	.	ID=2756;Type=deletion;Left=chr5:95369082-95369466;Right=chr5:95369436-95369917
chr5	CG	SV	95657489	95657815	13	+	.	ID=1824;Type=interchromosomal;Left=chr5:95657489-95657815+;Right=chr17:54648511-54648715+;Distance=;DiscordantMatePairAlignments=13;LeftRepeat=L1ME4a:LINE:L1;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr17	CG	SV	54648511	54648715	13	+	.	ID=1824;Type=interchromosomal;Left=chr5:95657489-95657815+;Right=chr17:54648511-54648715+;Distance=;DiscordantMatePairAlignments=13;LeftRepeat=L1ME4a:LINE:L1;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	95935487	95936278	12	.	.	ID=2755;Type=deletion;Left=chr5:95935487-95935849+;Right=chr5:95935833-95936278+;Distance=346;DiscordantMatePairAlignments=12;LeftRepeat=Tandem T;RightRepeat=L1MDb:LINE:L1;LeftGenes=;RightGenes=;XRef=rs70950645 (chr5:95935487-95935833);Frequency=1.00
chr5	CG	SV	95935487	95935849	12	+	.	ID=2755;Type=deletion;Left=chr5:95935487-95935849;Right=chr5:95935833-95936278
chr5	CG	SV	95935833	95936278	12	+	.	ID=2755;Type=deletion;Left=chr5:95935487-95935849;Right=chr5:95935833-95936278
chr5	CG	SV	107230301	166031494	34	.	.	ID=298;Type=complex;Left=chr5:107230301-107230463-;Right=chr5:166031020-166031494+;Distance=58800557;DiscordantMatePairAlignments=34;LeftRepeat=L2:LINE:L2;RightRepeat=AluJo:SINE:Alu;LeftGenes=NM_001163315:-;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	107230301	107230463	34	-	.	ID=298;Type=complex;Left=chr5:107230301-107230463;Right=chr5:166031020-166031494
chr5	CG	SV	166031020	166031494	34	-	.	ID=298;Type=complex;Left=chr5:107230301-107230463;Right=chr5:166031020-166031494
chr5	CG	SV	107230627	163383345	28	.	.	ID=2740;Type=complex;Left=chr5:107230627-107230787+;Right=chr5:163382944-163383345+;Distance=56152317;DiscordantMatePairAlignments=28;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_001163315:-;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	107230627	107230787	28	+	.	ID=2740;Type=complex;Left=chr5:107230627-107230787;Right=chr5:163382944-163383345
chr5	CG	SV	163382944	163383345	28	+	.	ID=2740;Type=complex;Left=chr5:107230627-107230787;Right=chr5:163382944-163383345
chr5	CG	SV	107269004	107269272	48	-	.	ID=182;Type=interchromosomal;Left=chr5:107269004-107269272-;Right=chr16:70044674-70045046+;Distance=;DiscordantMatePairAlignments=48;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_001163315:-;RightGenes=NM_145911:-;XRef=;Frequency=0.00
chr16	CG	SV	70044674	70045046	48	-	.	ID=182;Type=interchromosomal;Left=chr5:107269004-107269272-;Right=chr16:70044674-70045046+;Distance=;DiscordantMatePairAlignments=48;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_001163315:-;RightGenes=NM_145911:-;XRef=;Frequency=0.00
chr5	CG	SV	115158366	115159162	18	.	.	ID=2748;Type=deletion;Left=chr5:115158366-115158767+;Right=chr5:115158715-115159162+;Distance=349;DiscordantMatePairAlignments=18;LeftRepeat=MER5A:DNA:MER1_type;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67420920 (chr5:115158366-115158715);Frequency=1.00
chr5	CG	SV	115158366	115158767	18	+	.	ID=2748;Type=deletion;Left=chr5:115158366-115158767;Right=chr5:115158715-115159162
chr5	CG	SV	115158715	115159162	18	+	.	ID=2748;Type=deletion;Left=chr5:115158366-115158767;Right=chr5:115158715-115159162
chr5	CG	SV	115374234	115378959	46	.	.	ID=299;Type=probable-inversion;Left=chr5:115374234-115374637-;Right=chr5:115378804-115378959+;Distance=4167;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=;LeftGenes=NM_173800:+;RightGenes=NM_173800:+;XRef=;Frequency=0.71
chr5	CG	SV	115374234	115374637	46	-	.	ID=299;Type=probable-inversion;Left=chr5:115374234-115374637;Right=chr5:115378804-115378959
chr5	CG	SV	115378804	115378959	46	-	.	ID=299;Type=probable-inversion;Left=chr5:115374234-115374637;Right=chr5:115378804-115378959
chr5	CG	SV	116210682	163407056	85	.	.	ID=997;Type=tandem-duplication;Left=chr5:116210682-116211166-;Right=chr5:163406638-163407056-;Distance=47195890;DiscordantMatePairAlignments=85;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	116210682	116211166	85	-	.	ID=997;Type=tandem-duplication;Left=chr5:116210682-116211166;Right=chr5:163406638-163407056
chr5	CG	SV	163406638	163407056	85	-	.	ID=997;Type=tandem-duplication;Left=chr5:116210682-116211166;Right=chr5:163406638-163407056
chr5	CG	SV	119043056	119043747	14	.	.	ID=2747;Type=deletion;Left=chr5:119043056-119043526+;Right=chr5:119043376-119043747+;Distance=320;DiscordantMatePairAlignments=14;LeftRepeat=AluYb9:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10523699 (chr5:119043056-119043376);Frequency=1.00
chr5	CG	SV	119043056	119043526	14	+	.	ID=2747;Type=deletion;Left=chr5:119043056-119043526;Right=chr5:119043376-119043747
chr5	CG	SV	119043376	119043747	14	+	.	ID=2747;Type=deletion;Left=chr5:119043056-119043526;Right=chr5:119043376-119043747
chr5	CG	SV	119408045	119410954	90	.	.	ID=2746;Type=deletion;Left=chr5:119408045-119408414+;Right=chr5:119410579-119410954+;Distance=2534;DiscordantMatePairAlignments=90;LeftRepeat=;RightRepeat=L1ME3A:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72401694 (chr5:119408045-119410576);Frequency=0.88
chr5	CG	SV	119408045	119408414	90	+	.	ID=2746;Type=deletion;Left=chr5:119408045-119408414;Right=chr5:119410579-119410954
chr5	CG	SV	119410579	119410954	90	+	.	ID=2746;Type=deletion;Left=chr5:119408045-119408414;Right=chr5:119410579-119410954
chr5	CG	SV	120253252	120496220	40	.	.	ID=2745;Type=deletion;Left=chr5:120253252-120253726+;Right=chr5:120495940-120496220+;Distance=242688;DiscordantMatePairAlignments=40;LeftRepeat=L1P4:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	120253252	120253726	40	+	.	ID=2745;Type=deletion;Left=chr5:120253252-120253726;Right=chr5:120495940-120496220
chr5	CG	SV	120495940	120496220	40	+	.	ID=2745;Type=deletion;Left=chr5:120253252-120253726;Right=chr5:120495940-120496220
chr5	CG	SV	121604024	121609133	59	.	.	ID=2744;Type=deletion;Left=chr5:121604024-121604416+;Right=chr5:121608717-121609133+;Distance=4693;DiscordantMatePairAlignments=59;LeftRepeat=L1MA9:LINE:L1;RightRepeat=L1MA9:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr5	CG	SV	121604024	121604416	59	+	.	ID=2744;Type=deletion;Left=chr5:121604024-121604416;Right=chr5:121608717-121609133
chr5	CG	SV	121608717	121609133	59	+	.	ID=2744;Type=deletion;Left=chr5:121604024-121604416;Right=chr5:121608717-121609133
chr5	CG	SV	121952170	121955750	217	.	.	ID=2743;Type=deletion;Left=chr5:121952170-121952567+;Right=chr5:121955333-121955750+;Distance=3163;DiscordantMatePairAlignments=217;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	121952170	121952567	217	+	.	ID=2743;Type=deletion;Left=chr5:121952170-121952567;Right=chr5:121955333-121955750
chr5	CG	SV	121955333	121955750	217	+	.	ID=2743;Type=deletion;Left=chr5:121952170-121952567;Right=chr5:121955333-121955750
chr5	CG	SV	126486277	126487165	238	.	.	ID=2738;Type=deletion;Left=chr5:126486277-126486727+;Right=chr5:126486715-126487165+;Distance=438;DiscordantMatePairAlignments=238;LeftRepeat=HERV16:LTR:ERVL;RightRepeat=HERV16:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs67355812 (chr5:126486277-126486715);Frequency=0.82
chr5	CG	SV	126486277	126486727	238	+	.	ID=2738;Type=deletion;Left=chr5:126486277-126486727;Right=chr5:126486715-126487165
chr5	CG	SV	126486715	126487165	238	+	.	ID=2738;Type=deletion;Left=chr5:126486277-126486727;Right=chr5:126486715-126487165
chr5	CG	SV	127200231	127201608	21	.	.	ID=2737;Type=deletion;Left=chr5:127200231-127200643+;Right=chr5:127201181-127201608+;Distance=950;DiscordantMatePairAlignments=21;LeftRepeat=THE1C-int:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72270848 (chr5:127200229-127201179);Frequency=0.88
chr5	CG	SV	127200231	127200643	21	+	.	ID=2737;Type=deletion;Left=chr5:127200231-127200643;Right=chr5:127201181-127201608
chr5	CG	SV	127201181	127201608	21	+	.	ID=2737;Type=deletion;Left=chr5:127200231-127200643;Right=chr5:127201181-127201608
chr5	CG	SV	132946876	132953294	96	.	.	ID=2734;Type=deletion;Left=chr5:132946876-132947323+;Right=chr5:132952902-132953294+;Distance=6026;DiscordantMatePairAlignments=96;LeftRepeat=;RightRepeat=;LeftGenes=NM_015082:-;RightGenes=NM_015082:-;XRef=rs66911382 (chr5:132946863-132952889);Frequency=0.24
chr5	CG	SV	132946876	132947323	96	+	.	ID=2734;Type=deletion;Left=chr5:132946876-132947323;Right=chr5:132952902-132953294
chr5	CG	SV	132952902	132953294	96	+	.	ID=2734;Type=deletion;Left=chr5:132946876-132947323;Right=chr5:132952902-132953294
chr5	CG	SV	133458702	179588159	30	.	.	ID=2731;Type=deletion;Left=chr5:133458702-133459102+;Right=chr5:179587691-179588159+;Distance=46128989;DiscordantMatePairAlignments=30;LeftRepeat=MER103:DNA:DNA;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	133458702	133459102	30	+	.	ID=2731;Type=deletion;Left=chr5:133458702-133459102;Right=chr5:179587691-179588159
chr5	CG	SV	179587691	179588159	30	+	.	ID=2731;Type=deletion;Left=chr5:133458702-133459102;Right=chr5:179587691-179588159
chr5	CG	SV	135143128	135149073	71	.	.	ID=2732;Type=deletion;Left=chr5:135143128-135143574+;Right=chr5:135148610-135149073+;Distance=5482;DiscordantMatePairAlignments=71;LeftRepeat=SATR1:Satellite:Satellite;Self chain;Tandem period 76;RightRepeat=SATR1:Satellite:Satellite;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr5	CG	SV	135143128	135143574	71	+	.	ID=2732;Type=deletion;Left=chr5:135143128-135143574;Right=chr5:135148610-135149073
chr5	CG	SV	135148610	135149073	71	+	.	ID=2732;Type=deletion;Left=chr5:135143128-135143574;Right=chr5:135148610-135149073
chr5	CG	SV	136882606	136884725	46	.	.	ID=2730;Type=deletion;Left=chr5:136882606-136882923+;Right=chr5:136884322-136884725+;Distance=1716;DiscordantMatePairAlignments=46;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg/x:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67020614 (chr5:136882557-136884273);Frequency=1.00
chr5	CG	SV	136882606	136882923	46	+	.	ID=2730;Type=deletion;Left=chr5:136882606-136882923;Right=chr5:136884322-136884725
chr5	CG	SV	136884322	136884725	46	+	.	ID=2730;Type=deletion;Left=chr5:136882606-136882923;Right=chr5:136884322-136884725
chr5	CG	SV	137050477	137052215	48	.	.	ID=2729;Type=deletion;Left=chr5:137050477-137050913+;Right=chr5:137051801-137052215+;Distance=1324;DiscordantMatePairAlignments=48;LeftRepeat=SVA:Other:Other;RightRepeat=;LeftGenes=NM_017415:-;RightGenes=NM_017415:-;XRef=rs72257455 (chr5:137050461-137051785);Frequency=0.82
chr5	CG	SV	137050477	137050913	48	+	.	ID=2729;Type=deletion;Left=chr5:137050477-137050913;Right=chr5:137051801-137052215
chr5	CG	SV	137051801	137052215	48	+	.	ID=2729;Type=deletion;Left=chr5:137050477-137050913;Right=chr5:137051801-137052215
chr5	CG	SV	142841383	142846678	89	.	.	ID=2726;Type=deletion;Left=chr5:142841383-142841803+;Right=chr5:142846270-142846678+;Distance=4887;DiscordantMatePairAlignments=89;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr5	CG	SV	142841383	142841803	89	+	.	ID=2726;Type=deletion;Left=chr5:142841383-142841803;Right=chr5:142846270-142846678
chr5	CG	SV	142846270	142846678	89	+	.	ID=2726;Type=deletion;Left=chr5:142841383-142841803;Right=chr5:142846270-142846678
chr5	CG	SV	143492313	143495244	236	.	.	ID=994;Type=distal-duplication;Left=chr5:143492313-143492681-;Right=chr5:143494784-143495244-;Distance=2563;DiscordantMatePairAlignments=236;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	143492313	143492681	236	-	.	ID=994;Type=distal-duplication;Left=chr5:143492313-143492681;Right=chr5:143494784-143495244
chr5	CG	SV	143494784	143495244	236	-	.	ID=994;Type=distal-duplication;Left=chr5:143492313-143492681;Right=chr5:143494784-143495244
chr5	CG	SV	143493060	143495682	170	.	.	ID=2725;Type=distal-duplication;Left=chr5:143493060-143493434+;Right=chr5:143495240-143495682+;Distance=2180;DiscordantMatePairAlignments=170;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	143493060	143493434	170	+	.	ID=2725;Type=distal-duplication;Left=chr5:143493060-143493434;Right=chr5:143495240-143495682
chr5	CG	SV	143495240	143495682	170	+	.	ID=2725;Type=distal-duplication;Left=chr5:143493060-143493434;Right=chr5:143495240-143495682
chr5	CG	SV	144852099	144853491	37	.	.	ID=2724;Type=deletion;Left=chr5:144852099-144852427+;Right=chr5:144853000-144853491+;Distance=901;DiscordantMatePairAlignments=37;LeftRepeat=L1MA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67005411 (chr5:144852097-144852998);Frequency=0.71
chr5	CG	SV	144852099	144852427	37	+	.	ID=2724;Type=deletion;Left=chr5:144852099-144852427;Right=chr5:144853000-144853491
chr5	CG	SV	144853000	144853491	37	+	.	ID=2724;Type=deletion;Left=chr5:144852099-144852427;Right=chr5:144853000-144853491
chr5	CG	SV	147533232	147534808	137	.	.	ID=3623;Type=complex;Left=chr5:147533232-147533666+;Right=chr5:147534433-147534808-;Distance=1576;DiscordantMatePairAlignments=137;LeftRepeat=;RightRepeat=;LeftGenes=NM_001001325:+;RightGenes=NM_001001325:+;XRef=;Frequency=1.00
chr5	CG	SV	147533232	147533666	137	+	.	ID=3623;Type=complex;Left=chr5:147533232-147533666;Right=chr5:147534433-147534808
chr5	CG	SV	147534433	147534808	137	+	.	ID=3623;Type=complex;Left=chr5:147533232-147533666;Right=chr5:147534433-147534808
chr5	CG	SV	147534057	147535393	69	.	.	ID=294;Type=complex;Left=chr5:147534057-147534432-;Right=chr5:147534971-147535393+;Distance=539;DiscordantMatePairAlignments=69;LeftRepeat=;RightRepeat=MIR3:SINE:MIR;LeftGenes=NM_001001325:+;RightGenes=NM_001001325:+;XRef=;Frequency=1.00
chr5	CG	SV	147534057	147534432	69	-	.	ID=294;Type=complex;Left=chr5:147534057-147534432;Right=chr5:147534971-147535393
chr5	CG	SV	147534971	147535393	69	-	.	ID=294;Type=complex;Left=chr5:147534057-147534432;Right=chr5:147534971-147535393
chr5	CG	SV	151436614	151443017	52	.	.	ID=2721;Type=deletion;Left=chr5:151436614-151437004+;Right=chr5:151442648-151443017+;Distance=6034;DiscordantMatePairAlignments=52;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67624953 (chr5:151436606-151442640);Frequency=0.88
chr5	CG	SV	151436614	151437004	52	+	.	ID=2721;Type=deletion;Left=chr5:151436614-151437004;Right=chr5:151442648-151443017
chr5	CG	SV	151442648	151443017	52	+	.	ID=2721;Type=deletion;Left=chr5:151436614-151437004;Right=chr5:151442648-151443017
chr5	CG	SV	155347450	155505348	43	.	.	ID=993;Type=tandem-duplication;Left=chr5:155347450-155347893-;Right=chr5:155505026-155505348-;Distance=157455;DiscordantMatePairAlignments=43;LeftRepeat=MLT1L:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	155347450	155347893	43	-	.	ID=993;Type=tandem-duplication;Left=chr5:155347450-155347893;Right=chr5:155505026-155505348
chr5	CG	SV	155505026	155505348	43	-	.	ID=993;Type=tandem-duplication;Left=chr5:155347450-155347893;Right=chr5:155505026-155505348
chr5	CG	SV	156512982	169342168	49	.	.	ID=292;Type=probable-inversion;Left=chr5:156512982-156513349-;Right=chr5:169341706-169342168+;Distance=12828357;DiscordantMatePairAlignments=49;LeftRepeat=L1MD:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=NM_004946:+;XRef=;Frequency=0.00
chr5	CG	SV	156512982	156513349	49	-	.	ID=292;Type=probable-inversion;Left=chr5:156512982-156513349;Right=chr5:169341706-169342168
chr5	CG	SV	169341706	169342168	49	-	.	ID=292;Type=probable-inversion;Left=chr5:156512982-156513349;Right=chr5:169341706-169342168
chr5	CG	SV	156527451	156527840	59	+	.	ID=2477;Type=interchromosomal;Left=chr5:156527451-156527840+;Right=chr10:133957281-133957739+;Distance=;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_173575:-;XRef=;Frequency=0.00
chr10	CG	SV	133957281	133957739	59	+	.	ID=2477;Type=interchromosomal;Left=chr5:156527451-156527840+;Right=chr10:133957281-133957739+;Distance=;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_173575:-;XRef=;Frequency=0.00
chr5	CG	SV	158524986	158525639	10	.	.	ID=2720;Type=deletion;Left=chr5:158524986-158525551+;Right=chr5:158525331-158525639+;Distance=345;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_144726:-;RightGenes=NM_144726:-;XRef=rs66989512 (chr5:158524986-158525331);Frequency=0.82
chr5	CG	SV	158524986	158525551	10	+	.	ID=2720;Type=deletion;Left=chr5:158524986-158525551;Right=chr5:158525331-158525639
chr5	CG	SV	158525331	158525639	10	+	.	ID=2720;Type=deletion;Left=chr5:158524986-158525551;Right=chr5:158525331-158525639
chr5	CG	SV	162966697	166048108	32	.	.	ID=992;Type=tandem-duplication;Left=chr5:162966697-162966905-;Right=chr5:166047749-166048108-;Distance=3081203;DiscordantMatePairAlignments=32;LeftRepeat=;RightRepeat=L1MA9:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	162966697	162966905	32	-	.	ID=992;Type=tandem-duplication;Left=chr5:162966697-162966905;Right=chr5:166047749-166048108
chr5	CG	SV	166047749	166048108	32	-	.	ID=992;Type=tandem-duplication;Left=chr5:162966697-162966905;Right=chr5:166047749-166048108
chr5	CG	SV	163382734	166031206	25	.	.	ID=290;Type=complex;Left=chr5:163382734-163382944-;Right=chr5:166031020-166031206+;Distance=2648076;DiscordantMatePairAlignments=25;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	163382734	163382944	25	-	.	ID=290;Type=complex;Left=chr5:163382734-163382944;Right=chr5:166031020-166031206
chr5	CG	SV	166031020	166031206	25	-	.	ID=290;Type=complex;Left=chr5:163382734-163382944;Right=chr5:166031020-166031206
chr5	CG	SV	164074173	164076287	28	.	.	ID=2717;Type=deletion;Left=chr5:164074173-164074502+;Right=chr5:164075942-164076287+;Distance=1769;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr5	CG	SV	164074173	164074502	28	+	.	ID=2717;Type=deletion;Left=chr5:164074173-164074502;Right=chr5:164075942-164076287
chr5	CG	SV	164075942	164076287	28	+	.	ID=2717;Type=deletion;Left=chr5:164074173-164074502;Right=chr5:164075942-164076287
chr5	CG	SV	165104041	165236859	99	.	.	ID=2715;Type=deletion;Left=chr5:165104041-165104528+;Right=chr5:165236386-165236859+;Distance=132345;DiscordantMatePairAlignments=99;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	165104041	165104528	99	+	.	ID=2715;Type=deletion;Left=chr5:165104041-165104528;Right=chr5:165236386-165236859
chr5	CG	SV	165236386	165236859	99	+	.	ID=2715;Type=deletion;Left=chr5:165104041-165104528;Right=chr5:165236386-165236859
chr5	CG	SV	169529814	169531821	67	.	.	ID=288;Type=distal-duplication;Left=chr5:169529814-169530045-;Right=chr5:169531333-169531821+;Distance=1288;DiscordantMatePairAlignments=67;LeftRepeat=MER20:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr5	CG	SV	169529814	169530045	67	-	.	ID=288;Type=distal-duplication;Left=chr5:169529814-169530045;Right=chr5:169531333-169531821
chr5	CG	SV	169531333	169531821	67	-	.	ID=288;Type=distal-duplication;Left=chr5:169529814-169530045;Right=chr5:169531333-169531821
chr5	CG	SV	169530275	169531327	73	.	.	ID=3620;Type=distal-duplication;Left=chr5:169530275-169530508+;Right=chr5:169530778-169531327-;Distance=1052;DiscordantMatePairAlignments=73;LeftRepeat=MIR3:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr5	CG	SV	169530275	169530508	73	+	.	ID=3620;Type=distal-duplication;Left=chr5:169530275-169530508;Right=chr5:169530778-169531327
chr5	CG	SV	169530778	169531327	73	+	.	ID=3620;Type=distal-duplication;Left=chr5:169530275-169530508;Right=chr5:169530778-169531327
chr5	CG	SV	171414553	175274688	12	.	.	ID=3618;Type=probable-inversion;Left=chr5:171414553-171414912+;Right=chr5:175274564-175274688-;Distance=3860135;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_005990:-;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	171414553	171414912	12	+	.	ID=3618;Type=probable-inversion;Left=chr5:171414553-171414912;Right=chr5:175274564-175274688
chr5	CG	SV	175274564	175274688	12	+	.	ID=3618;Type=probable-inversion;Left=chr5:171414553-171414912;Right=chr5:175274564-175274688
chr5	CG	SV	172822334	172823172	16	.	.	ID=2711;Type=deletion;Left=chr5:172822334-172822772+;Right=chr5:172822667-172823172+;Distance=333;DiscordantMatePairAlignments=16;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70950681 (chr5:172822334-172822667);Frequency=0.88
chr5	CG	SV	172822334	172822772	16	+	.	ID=2711;Type=deletion;Left=chr5:172822334-172822772;Right=chr5:172822667-172823172
chr5	CG	SV	172822667	172823172	16	+	.	ID=2711;Type=deletion;Left=chr5:172822334-172822772;Right=chr5:172822667-172823172
chr5	CG	SV	178280974	178286152	55	.	.	ID=2707;Type=deletion;Left=chr5:178280974-178281383+;Right=chr5:178285807-178286152+;Distance=4833;DiscordantMatePairAlignments=55;LeftRepeat=L1MD2:LINE:L1;Self chain;RightRepeat=L1ME3B:LINE:L1;Self chain;LeftGenes=NM_030613:+;RightGenes=NM_030613:+;XRef=;Frequency=0.24
chr5	CG	SV	178280974	178281383	55	+	.	ID=2707;Type=deletion;Left=chr5:178280974-178281383;Right=chr5:178285807-178286152
chr5	CG	SV	178285807	178286152	55	+	.	ID=2707;Type=deletion;Left=chr5:178280974-178281383;Right=chr5:178285807-178286152
chr5	CG	SV	179718847	179720687	42	.	.	ID=3617;Type=probable-inversion;Left=chr5:179718847-179719068+;Right=chr5:179720441-179720687-;Distance=1840;DiscordantMatePairAlignments=42;LeftRepeat=L2:LINE:L2;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	179718847	179719068	42	+	.	ID=3617;Type=probable-inversion;Left=chr5:179718847-179719068;Right=chr5:179720441-179720687
chr5	CG	SV	179720441	179720687	42	+	.	ID=3617;Type=probable-inversion;Left=chr5:179718847-179719068;Right=chr5:179720441-179720687
chr6	CG	SV	414008	414938	55	.	.	ID=2706;Type=deletion;Left=chr6:414008-414193+;Right=chr6:414481-414938+;Distance=473;DiscordantMatePairAlignments=55;LeftRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Tandem period 10;Tandem period 36;RightRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Tandem CTGTCT;Tandem period 30;Tandem period 36;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	414008	414193	55	+	.	ID=2706;Type=deletion;Left=chr6:414008-414193;Right=chr6:414481-414938
chr6	CG	SV	414481	414938	55	+	.	ID=2706;Type=deletion;Left=chr6:414008-414193;Right=chr6:414481-414938
chr6	CG	SV	802164	803090	30	.	.	ID=2705;Type=deletion;Left=chr6:802164-802301+;Right=chr6:802910-803090+;Distance=746;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Tandem ATCC;Tandem period 52;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr6	CG	SV	802164	802301	30	+	.	ID=2705;Type=deletion;Left=chr6:802164-802301;Right=chr6:802910-803090
chr6	CG	SV	802910	803090	30	+	.	ID=2705;Type=deletion;Left=chr6:802164-802301;Right=chr6:802910-803090
chr6	CG	SV	1627800	1628366	13	.	.	ID=2704;Type=deletion;Left=chr6:1627800-1628253+;Right=chr6:1628111-1628366+;Distance=311;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_001500:-;RightGenes=NM_001500:-;XRef=rs71945591 (chr6:1627790-1628101);Frequency=1.00
chr6	CG	SV	1627800	1628253	13	+	.	ID=2704;Type=deletion;Left=chr6:1627800-1628253;Right=chr6:1628111-1628366
chr6	CG	SV	1628111	1628366	13	+	.	ID=2704;Type=deletion;Left=chr6:1627800-1628253;Right=chr6:1628111-1628366
chr6	CG	SV	3995256	3996022	10	.	.	ID=2703;Type=deletion;Left=chr6:3995256-3995631+;Right=chr6:3995575-3996022+;Distance=319;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_003913:+;RightGenes=NM_003913:+;XRef=rs70976603 (chr6:3995256-3995575);Frequency=1.00
chr6	CG	SV	3995256	3995631	10	+	.	ID=2703;Type=deletion;Left=chr6:3995256-3995631;Right=chr6:3995575-3996022
chr6	CG	SV	3995575	3996022	10	+	.	ID=2703;Type=deletion;Left=chr6:3995256-3995631;Right=chr6:3995575-3996022
chr6	CG	SV	4199863	4200640	46	.	.	ID=2702;Type=deletion;Left=chr6:4199863-4200151+;Right=chr6:4200352-4200640+;Distance=489;DiscordantMatePairAlignments=46;LeftRepeat=Self chain;Tandem period 49;RightRepeat=MER20:DNA:MER1_type;Self chain;LeftGenes=;RightGenes=;XRef=rs72174483 (chr6:4199813-4200156);Frequency=0.29
chr6	CG	SV	4199863	4200151	46	+	.	ID=2702;Type=deletion;Left=chr6:4199863-4200151;Right=chr6:4200352-4200640
chr6	CG	SV	4200352	4200640	46	+	.	ID=2702;Type=deletion;Left=chr6:4199863-4200151;Right=chr6:4200352-4200640
chr6	CG	SV	4982248	4984526	114	.	.	ID=2701;Type=deletion;Left=chr6:4982248-4982732+;Right=chr6:4984185-4984526+;Distance=1937;DiscordantMatePairAlignments=114;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	4982248	4982732	114	+	.	ID=2701;Type=deletion;Left=chr6:4982248-4982732;Right=chr6:4984185-4984526
chr6	CG	SV	4984185	4984526	114	+	.	ID=2701;Type=deletion;Left=chr6:4982248-4982732;Right=chr6:4984185-4984526
chr6	CG	SV	11664092	11664932	15	.	.	ID=2699;Type=deletion;Left=chr6:11664092-11664546+;Right=chr6:11664412-11664932+;Distance=320;DiscordantMatePairAlignments=15;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1MCc:LINE:L1;LeftGenes=NM_001100829:+;RightGenes=NM_001100829:+;XRef=rs70976611 (chr6:11664092-11664412);Frequency=1.00
chr6	CG	SV	11664092	11664546	15	+	.	ID=2699;Type=deletion;Left=chr6:11664092-11664546;Right=chr6:11664412-11664932
chr6	CG	SV	11664412	11664932	15	+	.	ID=2699;Type=deletion;Left=chr6:11664092-11664546;Right=chr6:11664412-11664932
chr6	CG	SV	12540001	12540504	59	.	.	ID=3616;Type=probable-inversion;Left=chr6:12540001-12540417+;Right=chr6:12540232-12540504-;Distance=503;DiscordantMatePairAlignments=59;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr6	CG	SV	12540001	12540417	59	+	.	ID=3616;Type=probable-inversion;Left=chr6:12540001-12540417;Right=chr6:12540232-12540504
chr6	CG	SV	12540232	12540504	59	+	.	ID=3616;Type=probable-inversion;Left=chr6:12540001-12540417;Right=chr6:12540232-12540504
chr6	CG	SV	16992947	16994442	32	.	.	ID=2696;Type=deletion;Left=chr6:16992947-16993311+;Right=chr6:16994075-16994442+;Distance=1128;DiscordantMatePairAlignments=32;LeftRepeat=LTR49:LTR:ERV1;RightRepeat=MER4D1:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr6	CG	SV	16992947	16993311	32	+	.	ID=2696;Type=deletion;Left=chr6:16992947-16993311;Right=chr6:16994075-16994442
chr6	CG	SV	16994075	16994442	32	+	.	ID=2696;Type=deletion;Left=chr6:16992947-16993311;Right=chr6:16994075-16994442
chr6	CG	SV	18510069	18511244	120	.	.	ID=2695;Type=deletion;Left=chr6:18510069-18510453+;Right=chr6:18510849-18511244+;Distance=780;DiscordantMatePairAlignments=120;LeftRepeat=;RightRepeat=MER103:DNA:DNA;LeftGenes=NM_182757:+;RightGenes=NM_182757:+;XRef=rs66988260 (chr6:18510069-18510849);Frequency=0.94
chr6	CG	SV	18510069	18510453	120	+	.	ID=2695;Type=deletion;Left=chr6:18510069-18510453;Right=chr6:18510849-18511244
chr6	CG	SV	18510849	18511244	120	+	.	ID=2695;Type=deletion;Left=chr6:18510069-18510453;Right=chr6:18510849-18511244
chr6	CG	SV	23793974	23794731	15	.	.	ID=2692;Type=deletion;Left=chr6:23793974-23794448+;Right=chr6:23794303-23794731+;Distance=329;DiscordantMatePairAlignments=15;LeftRepeat=MSTD:LTR:MaLR;RightRepeat=MSTD:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr6	CG	SV	23793974	23794448	15	+	.	ID=2692;Type=deletion;Left=chr6:23793974-23794448;Right=chr6:23794303-23794731
chr6	CG	SV	23794303	23794731	15	+	.	ID=2692;Type=deletion;Left=chr6:23793974-23794448;Right=chr6:23794303-23794731
chr6	CG	SV	24919866	24926285	40	.	.	ID=2691;Type=deletion;Left=chr6:24919866-24920003+;Right=chr6:24925941-24926285+;Distance=6075;DiscordantMatePairAlignments=40;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_014722:-;RightGenes=NM_014722:-;XRef=rs72246104 (chr6:24919854-24925929);Frequency=0.94
chr6	CG	SV	24919866	24920003	40	+	.	ID=2691;Type=deletion;Left=chr6:24919866-24920003;Right=chr6:24925941-24926285
chr6	CG	SV	24925941	24926285	40	+	.	ID=2691;Type=deletion;Left=chr6:24919866-24920003;Right=chr6:24925941-24926285
chr6	CG	SV	32886732	32888081	93	.	.	ID=2689;Type=deletion;Left=chr6:32886732-32887192+;Right=chr6:32887798-32888081+;Distance=1066;DiscordantMatePairAlignments=93;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=L1MC5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs70976641 (chr6:32886732-32887798);Frequency=0.94
chr6	CG	SV	32886732	32887192	93	+	.	ID=2689;Type=deletion;Left=chr6:32886732-32887192;Right=chr6:32887798-32888081
chr6	CG	SV	32887798	32888081	93	+	.	ID=2689;Type=deletion;Left=chr6:32886732-32887192;Right=chr6:32887798-32888081
chr6	CG	SV	33201402	33202215	21	.	.	ID=2688;Type=deletion;Left=chr6:33201402-33201876+;Right=chr6:33201733-33202215+;Distance=331;DiscordantMatePairAlignments=21;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NR_001435:+;RightGenes=NR_001435:+;XRef=;Frequency=0.94
chr6	CG	SV	33201402	33201876	21	+	.	ID=2688;Type=deletion;Left=chr6:33201402-33201876;Right=chr6:33201733-33202215
chr6	CG	SV	33201733	33202215	21	+	.	ID=2688;Type=deletion;Left=chr6:33201402-33201876;Right=chr6:33201733-33202215
chr6	CG	SV	33691176	33694302	130	.	.	ID=2687;Type=deletion;Left=chr6:33691176-33691612+;Right=chr6:33693823-33694302+;Distance=2647;DiscordantMatePairAlignments=130;LeftRepeat=AluSq:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67749647 (chr6:33691175-33693822);Frequency=0.53
chr6	CG	SV	33691176	33691612	130	+	.	ID=2687;Type=deletion;Left=chr6:33691176-33691612;Right=chr6:33693823-33694302
chr6	CG	SV	33693823	33694302	130	+	.	ID=2687;Type=deletion;Left=chr6:33691176-33691612;Right=chr6:33693823-33694302
chr6	CG	SV	34807900	34809473	78	.	.	ID=2686;Type=deletion;Left=chr6:34807900-34808238+;Right=chr6:34809096-34809473+;Distance=1196;DiscordantMatePairAlignments=78;LeftRepeat=MIRb:SINE:MIR;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr6	CG	SV	34807900	34808238	78	+	.	ID=2686;Type=deletion;Left=chr6:34807900-34808238;Right=chr6:34809096-34809473
chr6	CG	SV	34809096	34809473	78	+	.	ID=2686;Type=deletion;Left=chr6:34807900-34808238;Right=chr6:34809096-34809473
chr6	CG	SV	35734412	35738037	44	.	.	ID=2685;Type=deletion;Left=chr6:35734412-35734724+;Right=chr6:35737724-35738037+;Distance=3312;DiscordantMatePairAlignments=44;LeftRepeat=L1M4:LINE:L1;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_001145775:-;NM_001145776:-;NM_001145777:-;NM_004117:-;RightGenes=NM_001145775:-;NM_001145776:-;NM_001145777:-;NM_004117:-;XRef=rs70976643 (chr6:35734412-35737724);Frequency=0.82
chr6	CG	SV	35734412	35734724	44	+	.	ID=2685;Type=deletion;Left=chr6:35734412-35734724;Right=chr6:35737724-35738037
chr6	CG	SV	35737724	35738037	44	+	.	ID=2685;Type=deletion;Left=chr6:35734412-35734724;Right=chr6:35737724-35738037
chr6	CG	SV	41972822	41973616	34	.	.	ID=2683;Type=deletion;Left=chr6:41972822-41973262+;Right=chr6:41973385-41973616+;Distance=563;DiscordantMatePairAlignments=34;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr6	CG	SV	41972822	41973262	34	+	.	ID=2683;Type=deletion;Left=chr6:41972822-41973262;Right=chr6:41973385-41973616
chr6	CG	SV	41973385	41973616	34	+	.	ID=2683;Type=deletion;Left=chr6:41972822-41973262;Right=chr6:41973385-41973616
chr6	CG	SV	51307435	51308448	41	.	.	ID=2682;Type=deletion;Left=chr6:51307435-51307675+;Right=chr6:51308085-51308448+;Distance=650;DiscordantMatePairAlignments=41;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr6	CG	SV	51307435	51307675	41	+	.	ID=2682;Type=deletion;Left=chr6:51307435-51307675;Right=chr6:51308085-51308448
chr6	CG	SV	51308085	51308448	41	+	.	ID=2682;Type=deletion;Left=chr6:51307435-51307675;Right=chr6:51308085-51308448
chr6	CG	SV	51844070	51845166	85	.	.	ID=2679;Type=deletion;Left=chr6:51844070-51844504+;Right=chr6:51844765-51845166+;Distance=695;DiscordantMatePairAlignments=85;LeftRepeat=L1ME1:LINE:L1;RightRepeat=HAL1:LINE:L1;LeftGenes=NM_138694:-;NM_170724:-;RightGenes=NM_138694:-;NM_170724:-;XRef=rs66493455 (chr6:51844068-51844763);Frequency=0.88
chr6	CG	SV	51844070	51844504	85	+	.	ID=2679;Type=deletion;Left=chr6:51844070-51844504;Right=chr6:51844765-51845166
chr6	CG	SV	51844765	51845166	85	+	.	ID=2679;Type=deletion;Left=chr6:51844070-51844504;Right=chr6:51844765-51845166
chr6	CG	SV	54032466	54036668	46	.	.	ID=982;Type=complex;Left=chr6:54032466-54032616-;Right=chr6:54036286-54036668-;Distance=4052;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=;LeftGenes=NM_138569:+;RightGenes=NM_138569:+;XRef=;Frequency=0.88
chr6	CG	SV	54032466	54032616	46	-	.	ID=982;Type=complex;Left=chr6:54032466-54032616;Right=chr6:54036286-54036668
chr6	CG	SV	54036286	54036668	46	-	.	ID=982;Type=complex;Left=chr6:54032466-54032616;Right=chr6:54036286-54036668
chr6	CG	SV	54032764	54043220	27	.	.	ID=2678;Type=complex;Left=chr6:54032764-54032911+;Right=chr6:54042789-54043220+;Distance=10025;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=;LeftGenes=NM_138569:+;RightGenes=NM_138569:+;XRef=;Frequency=0.88
chr6	CG	SV	54032764	54032911	27	+	.	ID=2678;Type=complex;Left=chr6:54032764-54032911;Right=chr6:54042789-54043220
chr6	CG	SV	54042789	54043220	27	+	.	ID=2678;Type=complex;Left=chr6:54032764-54032911;Right=chr6:54042789-54043220
chr6	CG	SV	54036668	54043064	65	.	.	ID=2677;Type=complex;Left=chr6:54036668-54036993+;Right=chr6:54042787-54043064+;Distance=6119;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=;LeftGenes=NM_138569:+;RightGenes=NM_138569:+;XRef=;Frequency=0.88
chr6	CG	SV	54036668	54036993	65	+	.	ID=2677;Type=complex;Left=chr6:54036668-54036993;Right=chr6:54042787-54043064
chr6	CG	SV	54042787	54043064	65	+	.	ID=2677;Type=complex;Left=chr6:54036668-54036993;Right=chr6:54042787-54043064
chr6	CG	SV	54972337	54973052	13	.	.	ID=2675;Type=deletion;Left=chr6:54972337-54972771+;Right=chr6:54972664-54973052+;Distance=327;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6149594 (chr6:54972322-54972649);Frequency=1.00
chr6	CG	SV	54972337	54972771	13	+	.	ID=2675;Type=deletion;Left=chr6:54972337-54972771;Right=chr6:54972664-54973052
chr6	CG	SV	54972664	54973052	13	+	.	ID=2675;Type=deletion;Left=chr6:54972337-54972771;Right=chr6:54972664-54973052
chr6	CG	SV	57392870	57397618	105	.	.	ID=2674;Type=deletion;Left=chr6:57392870-57393254+;Right=chr6:57397315-57397618+;Distance=4445;DiscordantMatePairAlignments=105;LeftRepeat=;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs72273072 (chr6:57392872-57397315);Frequency=1.00
chr6	CG	SV	57392870	57393254	105	+	.	ID=2674;Type=deletion;Left=chr6:57392870-57393254;Right=chr6:57397315-57397618
chr6	CG	SV	57397315	57397618	105	+	.	ID=2674;Type=deletion;Left=chr6:57392870-57393254;Right=chr6:57397315-57397618
chr6	CG	SV	57405149	57409829	42	.	.	ID=2673;Type=deletion;Left=chr6:57405149-57405510+;Right=chr6:57409205-57409829+;Distance=4056;DiscordantMatePairAlignments=42;LeftRepeat=;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=;Frequency=1.00
chr6	CG	SV	57405149	57405510	42	+	.	ID=2673;Type=deletion;Left=chr6:57405149-57405510;Right=chr6:57409205-57409829
chr6	CG	SV	57409205	57409829	42	+	.	ID=2673;Type=deletion;Left=chr6:57405149-57405510;Right=chr6:57409205-57409829
chr6	CG	SV	57531030	57537545	248	.	.	ID=2672;Type=deletion;Left=chr6:57531030-57531496+;Right=chr6:57537082-57537545+;Distance=6052;DiscordantMatePairAlignments=248;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs68023605 (chr6:57531027-57537079);Frequency=1.00
chr6	CG	SV	57531030	57531496	248	+	.	ID=2672;Type=deletion;Left=chr6:57531030-57531496;Right=chr6:57537082-57537545
chr6	CG	SV	57537082	57537545	248	+	.	ID=2672;Type=deletion;Left=chr6:57531030-57531496;Right=chr6:57537082-57537545
chr6	CG	SV	57586119	57587236	172	.	.	ID=2671;Type=deletion;Left=chr6:57586119-57586597+;Right=chr6:57586826-57587236+;Distance=707;DiscordantMatePairAlignments=172;LeftRepeat=L1PA2:LINE:L1;RightRepeat=L1ME1:LINE:L1;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs72194487 (chr6:57586107-57586814);Frequency=1.00
chr6	CG	SV	57586119	57586597	172	+	.	ID=2671;Type=deletion;Left=chr6:57586119-57586597;Right=chr6:57586826-57587236
chr6	CG	SV	57586826	57587236	172	+	.	ID=2671;Type=deletion;Left=chr6:57586119-57586597;Right=chr6:57586826-57587236
chr6	CG	SV	57691648	57698609	16	.	.	ID=2670;Type=deletion;Left=chr6:57691648-57692077+;Right=chr6:57698241-57698609+;Distance=6593;DiscordantMatePairAlignments=16;LeftRepeat=(TTTTTA)n:Simple_repeat:Simple_repeat;RightRepeat=Charlie5:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs66514956 (chr6:57691631-57698224);Frequency=1.00
chr6	CG	SV	57691648	57692077	16	+	.	ID=2670;Type=deletion;Left=chr6:57691648-57692077;Right=chr6:57698241-57698609
chr6	CG	SV	57698241	57698609	16	+	.	ID=2670;Type=deletion;Left=chr6:57691648-57692077;Right=chr6:57698241-57698609
chr6	CG	SV	64724975	64726700	78	.	.	ID=2663;Type=deletion;Left=chr6:64724975-64725414+;Right=chr6:64726314-64726700+;Distance=1339;DiscordantMatePairAlignments=78;LeftRepeat=MER82:DNA:MER2_type;Self chain;RightRepeat=MLT1A1:LTR:MaLR;LeftGenes=NM_001142800:-;RightGenes=NM_001142800:-;XRef=rs71765003 (chr6:64724970-64726309);Frequency=0.65
chr6	CG	SV	64724975	64725414	78	+	.	ID=2663;Type=deletion;Left=chr6:64724975-64725414;Right=chr6:64726314-64726700
chr6	CG	SV	64726314	64726700	78	+	.	ID=2663;Type=deletion;Left=chr6:64724975-64725414;Right=chr6:64726314-64726700
chr6	CG	SV	66316758	66319185	221	.	.	ID=2662;Type=deletion;Left=chr6:66316758-66317193+;Right=chr6:66318752-66319185+;Distance=1994;DiscordantMatePairAlignments=221;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=NM_001142800:-;NM_001142801:-;NM_198283:-;RightGenes=NM_001142800:-;NM_001142801:-;NM_198283:-;XRef=rs67260056 (chr6:66316748-66318742);Frequency=1.00
chr6	CG	SV	66316758	66317193	221	+	.	ID=2662;Type=deletion;Left=chr6:66316758-66317193;Right=chr6:66318752-66319185
chr6	CG	SV	66318752	66319185	221	+	.	ID=2662;Type=deletion;Left=chr6:66316758-66317193;Right=chr6:66318752-66319185
chr6	CG	SV	68158254	68169279	36	.	.	ID=2660;Type=deletion;Left=chr6:68158254-68158670+;Right=chr6:68168889-68169279+;Distance=10635;DiscordantMatePairAlignments=36;LeftRepeat=;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	68158254	68158670	36	+	.	ID=2660;Type=deletion;Left=chr6:68158254-68158670;Right=chr6:68168889-68169279
chr6	CG	SV	68168889	68169279	36	+	.	ID=2660;Type=deletion;Left=chr6:68158254-68158670;Right=chr6:68168889-68169279
chr6	CG	SV	69198893	69200190	138	.	.	ID=2659;Type=deletion;Left=chr6:69198893-69199344+;Right=chr6:69199836-69200190+;Distance=943;DiscordantMatePairAlignments=138;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr6	CG	SV	69198893	69199344	138	+	.	ID=2659;Type=deletion;Left=chr6:69198893-69199344;Right=chr6:69199836-69200190
chr6	CG	SV	69199836	69200190	138	+	.	ID=2659;Type=deletion;Left=chr6:69198893-69199344;Right=chr6:69199836-69200190
chr6	CG	SV	74648790	74659644	38	.	.	ID=2657;Type=deletion;Left=chr6:74648790-74649133+;Right=chr6:74659169-74659644+;Distance=10379;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=MSTA:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr6	CG	SV	74648790	74649133	38	+	.	ID=2657;Type=deletion;Left=chr6:74648790-74649133;Right=chr6:74659169-74659644
chr6	CG	SV	74659169	74659644	38	+	.	ID=2657;Type=deletion;Left=chr6:74648790-74649133;Right=chr6:74659169-74659644
chr6	CG	SV	74922168	74923739	92	.	.	ID=2656;Type=deletion;Left=chr6:74922168-74922554+;Right=chr6:74923319-74923739+;Distance=1151;DiscordantMatePairAlignments=92;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70976682 (chr6:74922168-74923319);Frequency=0.94
chr6	CG	SV	74922168	74922554	92	+	.	ID=2656;Type=deletion;Left=chr6:74922168-74922554;Right=chr6:74923319-74923739
chr6	CG	SV	74923319	74923739	92	+	.	ID=2656;Type=deletion;Left=chr6:74922168-74922554;Right=chr6:74923319-74923739
chr6	CG	SV	77154216	77159593	29	.	.	ID=2653;Type=deletion;Left=chr6:77154216-77154677+;Right=chr6:77159365-77159593+;Distance=5149;DiscordantMatePairAlignments=29;LeftRepeat=L1MA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67536422 (chr6:77154212-77159361);Frequency=0.71
chr6	CG	SV	77154216	77154677	29	+	.	ID=2653;Type=deletion;Left=chr6:77154216-77154677;Right=chr6:77159365-77159593
chr6	CG	SV	77159365	77159593	29	+	.	ID=2653;Type=deletion;Left=chr6:77154216-77154677;Right=chr6:77159365-77159593
chr6	CG	SV	81112917	81114994	92	.	.	ID=2649;Type=deletion;Left=chr6:81112917-81113282+;Right=chr6:81114599-81114994+;Distance=1682;DiscordantMatePairAlignments=92;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	81112917	81113282	92	+	.	ID=2649;Type=deletion;Left=chr6:81112917-81113282;Right=chr6:81114599-81114994
chr6	CG	SV	81114599	81114994	92	+	.	ID=2649;Type=deletion;Left=chr6:81112917-81113282;Right=chr6:81114599-81114994
chr6	CG	SV	82134859	82147947	56	.	.	ID=283;Type=probable-inversion;Left=chr6:82134859-82135227-;Right=chr6:82147560-82147947+;Distance=12333;DiscordantMatePairAlignments=56;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	82134859	82135227	56	-	.	ID=283;Type=probable-inversion;Left=chr6:82134859-82135227;Right=chr6:82147560-82147947
chr6	CG	SV	82147560	82147947	56	-	.	ID=283;Type=probable-inversion;Left=chr6:82134859-82135227;Right=chr6:82147560-82147947
chr6	CG	SV	84647305	84660140	34	.	.	ID=973;Type=tandem-duplication;Left=chr6:84647305-84647694-;Right=chr6:84659891-84660140-;Distance=12446;DiscordantMatePairAlignments=34;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_016230:+;RightGenes=NM_016230:+;XRef=;Frequency=0.00
chr6	CG	SV	84647305	84647694	34	-	.	ID=973;Type=tandem-duplication;Left=chr6:84647305-84647694;Right=chr6:84659891-84660140
chr6	CG	SV	84659891	84660140	34	-	.	ID=973;Type=tandem-duplication;Left=chr6:84647305-84647694;Right=chr6:84659891-84660140
chr6	CG	SV	85374870	85381319	78	.	.	ID=2647;Type=deletion;Left=chr6:85374870-85375273+;Right=chr6:85380947-85381319+;Distance=6077;DiscordantMatePairAlignments=78;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70976689 (chr6:85374870-85380947);Frequency=1.00
chr6	CG	SV	85374870	85375273	78	+	.	ID=2647;Type=deletion;Left=chr6:85374870-85375273;Right=chr6:85380947-85381319
chr6	CG	SV	85380947	85381319	78	+	.	ID=2647;Type=deletion;Left=chr6:85374870-85375273;Right=chr6:85380947-85381319
chr6	CG	SV	89980342	89980672	53	.	.	ID=3612;Type=probable-inversion;Left=chr6:89980342-89980732+;Right=chr6:89980350-89980672-;Distance=330;DiscordantMatePairAlignments=53;LeftRepeat=L1M3:LINE:L1;RightRepeat=L1MA7:LINE:L1;LeftGenes=NM_002042:-;RightGenes=NM_002042:-;XRef=;Frequency=1.00
chr6	CG	SV	89980342	89980732	53	+	.	ID=3612;Type=probable-inversion;Left=chr6:89980342-89980732;Right=chr6:89980350-89980672
chr6	CG	SV	89980350	89980672	53	+	.	ID=3612;Type=probable-inversion;Left=chr6:89980342-89980732;Right=chr6:89980350-89980672
chr6	CG	SV	92967388	92968053	10	.	.	ID=2646;Type=deletion;Left=chr6:92967388-92967728+;Right=chr6:92967711-92968053+;Distance=323;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=LTR8A-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr6	CG	SV	92967388	92967728	10	+	.	ID=2646;Type=deletion;Left=chr6:92967388-92967728;Right=chr6:92967711-92968053
chr6	CG	SV	92967711	92968053	10	+	.	ID=2646;Type=deletion;Left=chr6:92967388-92967728;Right=chr6:92967711-92968053
chr6	CG	SV	94797795	94798041	19	.	.	ID=3611;Type=probable-inversion;Left=chr6:94797795-94798139+;Right=chr6:94797843-94798041-;Distance=246;DiscordantMatePairAlignments=19;LeftRepeat=;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr6	CG	SV	94797795	94798139	19	+	.	ID=3611;Type=probable-inversion;Left=chr6:94797795-94798139;Right=chr6:94797843-94798041
chr6	CG	SV	94797843	94798041	19	+	.	ID=3611;Type=probable-inversion;Left=chr6:94797795-94798139;Right=chr6:94797843-94798041
chr6	CG	SV	95250045	95251450	56	.	.	ID=2645;Type=deletion;Left=chr6:95250045-95250391+;Right=chr6:95251059-95251450+;Distance=1014;DiscordantMatePairAlignments=56;LeftRepeat=L1M5:LINE:L1;RightRepeat=L1MEc:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67517600 (chr6:95250045-95251059);Frequency=0.76
chr6	CG	SV	95250045	95250391	56	+	.	ID=2645;Type=deletion;Left=chr6:95250045-95250391;Right=chr6:95251059-95251450
chr6	CG	SV	95251059	95251450	56	+	.	ID=2645;Type=deletion;Left=chr6:95250045-95250391;Right=chr6:95251059-95251450
chr6	CG	SV	100141222	100142442	102	.	.	ID=2643;Type=deletion;Left=chr6:100141222-100141640+;Right=chr6:100142042-100142442+;Distance=820;DiscordantMatePairAlignments=102;LeftRepeat=Tigger1:DNA:MER2_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67162792 (chr6:100141227-100142042);Frequency=1.00
chr6	CG	SV	100141222	100141640	102	+	.	ID=2643;Type=deletion;Left=chr6:100141222-100141640;Right=chr6:100142042-100142442
chr6	CG	SV	100142042	100142442	102	+	.	ID=2643;Type=deletion;Left=chr6:100141222-100141640;Right=chr6:100142042-100142442
chr6	CG	SV	101150686	101345173	12	.	.	ID=972;Type=tandem-duplication;Left=chr6:101150686-101150970-;Right=chr6:101344858-101345173-;Distance=194203;DiscordantMatePairAlignments=12;LeftRepeat=L1M5:LINE:L1;RightRepeat=Self chain;LeftGenes=NM_006828:-;RightGenes=NM_006828:-;XRef=;Frequency=0.00
chr6	CG	SV	101150686	101150970	12	-	.	ID=972;Type=tandem-duplication;Left=chr6:101150686-101150970;Right=chr6:101344858-101345173
chr6	CG	SV	101344858	101345173	12	-	.	ID=972;Type=tandem-duplication;Left=chr6:101150686-101150970;Right=chr6:101344858-101345173
chr6	CG	SV	103844157	103869996	10	.	.	ID=2642;Type=deletion;Left=chr6:103844157-103844337+;Right=chr6:103869582-103869996+;Distance=25425;DiscordantMatePairAlignments=10;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1PA7:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr6	CG	SV	103844157	103844337	10	+	.	ID=2642;Type=deletion;Left=chr6:103844157-103844337;Right=chr6:103869582-103869996
chr6	CG	SV	103869582	103869996	10	+	.	ID=2642;Type=deletion;Left=chr6:103844157-103844337;Right=chr6:103869582-103869996
chr6	CG	SV	105674546	105675273	13	.	.	ID=2641;Type=deletion;Left=chr6:105674546-105675022+;Right=chr6:105674881-105675273+;Distance=335;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_007073:-;NM_147147:-;RightGenes=NM_007073:-;NM_147147:-;XRef=rs67100188 (chr6:105674530-105674865);Frequency=1.00
chr6	CG	SV	105674546	105675022	13	+	.	ID=2641;Type=deletion;Left=chr6:105674546-105675022;Right=chr6:105674881-105675273
chr6	CG	SV	105674881	105675273	13	+	.	ID=2641;Type=deletion;Left=chr6:105674546-105675022;Right=chr6:105674881-105675273
chr6	CG	SV	107090329	107091137	16	.	.	ID=2639;Type=deletion;Left=chr6:107090329-107090736+;Right=chr6:107090648-107091137+;Distance=319;DiscordantMatePairAlignments=16;LeftRepeat=L1MC4:LINE:L1;Tandem T;RightRepeat=L1MC4:LINE:L1;LeftGenes=NM_001624:+;RightGenes=NM_001624:+;XRef=rs67203523 (chr6:107090329-107090648);Frequency=1.00
chr6	CG	SV	107090329	107090736	16	+	.	ID=2639;Type=deletion;Left=chr6:107090329-107090736;Right=chr6:107090648-107091137
chr6	CG	SV	107090648	107091137	16	+	.	ID=2639;Type=deletion;Left=chr6:107090329-107090736;Right=chr6:107090648-107091137
chr6	CG	SV	108138035	108139626	76	.	.	ID=2637;Type=deletion;Left=chr6:108138035-108138341+;Right=chr6:108139095-108139626+;Distance=1060;DiscordantMatePairAlignments=76;LeftRepeat=;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_198081:-;RightGenes=NM_198081:-;XRef=rs66561424 (chr6:108138035-108139079);Frequency=1.00
chr6	CG	SV	108138035	108138341	76	+	.	ID=2637;Type=deletion;Left=chr6:108138035-108138341;Right=chr6:108139095-108139626
chr6	CG	SV	108139095	108139626	76	+	.	ID=2637;Type=deletion;Left=chr6:108138035-108138341;Right=chr6:108139095-108139626
chr6	CG	SV	113807653	113810228	27	.	.	ID=2636;Type=deletion;Left=chr6:113807653-113808058+;Right=chr6:113809812-113810228+;Distance=2159;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	113807653	113808058	27	+	.	ID=2636;Type=deletion;Left=chr6:113807653-113808058;Right=chr6:113809812-113810228
chr6	CG	SV	113809812	113810228	27	+	.	ID=2636;Type=deletion;Left=chr6:113807653-113808058;Right=chr6:113809812-113810228
chr6	CG	SV	119303324	119304020	22	.	.	ID=970;Type=tandem-duplication;Left=chr6:119303324-119303689-;Right=chr6:119303663-119304020-;Distance=331;DiscordantMatePairAlignments=22;LeftRepeat=L1M1:LINE:L1;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	119303324	119303689	22	-	.	ID=970;Type=tandem-duplication;Left=chr6:119303324-119303689;Right=chr6:119303663-119304020
chr6	CG	SV	119303663	119304020	22	-	.	ID=970;Type=tandem-duplication;Left=chr6:119303324-119303689;Right=chr6:119303663-119304020
chr6	CG	SV	119459218	119459895	13	.	.	ID=2634;Type=deletion;Left=chr6:119459218-119459624+;Right=chr6:119459546-119459895+;Distance=328;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001100411:-;RightGenes=NM_001100411:-;XRef=rs6149777 (chr6:119459202-119459530);Frequency=0.82
chr6	CG	SV	119459218	119459624	13	+	.	ID=2634;Type=deletion;Left=chr6:119459218-119459624;Right=chr6:119459546-119459895
chr6	CG	SV	119459546	119459895	13	+	.	ID=2634;Type=deletion;Left=chr6:119459218-119459624;Right=chr6:119459546-119459895
chr6	CG	SV	121839144	121840137	11	.	.	ID=2631;Type=deletion;Left=chr6:121839144-121839633+;Right=chr6:121839755-121840137+;Distance=611;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr6	CG	SV	121839144	121839633	11	+	.	ID=2631;Type=deletion;Left=chr6:121839144-121839633;Right=chr6:121839755-121840137
chr6	CG	SV	121839755	121840137	11	+	.	ID=2631;Type=deletion;Left=chr6:121839144-121839633;Right=chr6:121839755-121840137
chr6	CG	SV	125750461	125753392	41	.	.	ID=2628;Type=deletion;Left=chr6:125750461-125750788+;Right=chr6:125753064-125753392+;Distance=2603;DiscordantMatePairAlignments=41;LeftRepeat=L1MDa:LINE:L1;Tandem period 11;Tandem period 8;RightRepeat=L1MDa:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr6	CG	SV	125750461	125750788	41	+	.	ID=2628;Type=deletion;Left=chr6:125750461-125750788;Right=chr6:125753064-125753392
chr6	CG	SV	125753064	125753392	41	+	.	ID=2628;Type=deletion;Left=chr6:125750461-125750788;Right=chr6:125753064-125753392
chr6	CG	SV	129361211	129367717	249	.	.	ID=2627;Type=deletion;Left=chr6:129361211-129361661+;Right=chr6:129367270-129367717+;Distance=6059;DiscordantMatePairAlignments=249;LeftRepeat=;RightRepeat=;LeftGenes=NM_000426:+;NM_001079823:+;RightGenes=NM_000426:+;NM_001079823:+;XRef=rs71701877 (chr6:129361208-129367267);Frequency=0.41
chr6	CG	SV	129361211	129361661	249	+	.	ID=2627;Type=deletion;Left=chr6:129361211-129361661;Right=chr6:129367270-129367717
chr6	CG	SV	129367270	129367717	249	+	.	ID=2627;Type=deletion;Left=chr6:129361211-129361661;Right=chr6:129367270-129367717
chr6	CG	SV	129778772	129779239	12	.	.	ID=2626;Type=deletion;Left=chr6:129778772-129779241+;Right=chr6:129779086-129779239+;Distance=314;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=NM_000426:+;NM_001079823:+;RightGenes=NM_000426:+;NM_001079823:+;XRef=;Frequency=0.71
chr6	CG	SV	129778772	129779241	12	+	.	ID=2626;Type=deletion;Left=chr6:129778772-129779241;Right=chr6:129779086-129779239
chr6	CG	SV	129779086	129779239	12	+	.	ID=2626;Type=deletion;Left=chr6:129778772-129779241;Right=chr6:129779086-129779239
chr6	CG	SV	131926367	131927097	32	.	.	ID=282;Type=probable-inversion;Left=chr6:131926367-131926491-;Right=chr6:131926654-131927097+;Distance=163;DiscordantMatePairAlignments=32;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	131926367	131926491	32	-	.	ID=282;Type=probable-inversion;Left=chr6:131926367-131926491;Right=chr6:131926654-131927097
chr6	CG	SV	131926654	131927097	32	-	.	ID=282;Type=probable-inversion;Left=chr6:131926367-131926491;Right=chr6:131926654-131927097
chr6	CG	SV	133383525	133390028	149	.	.	ID=2625;Type=deletion;Left=chr6:133383525-133383927+;Right=chr6:133389590-133390028+;Distance=6065;DiscordantMatePairAlignments=149;LeftRepeat=L1ME3B:LINE:L1;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70979714 (chr6:133383513-133389578);Frequency=0.82
chr6	CG	SV	133383525	133383927	149	+	.	ID=2625;Type=deletion;Left=chr6:133383525-133383927;Right=chr6:133389590-133390028
chr6	CG	SV	133389590	133390028	149	+	.	ID=2625;Type=deletion;Left=chr6:133383525-133383927;Right=chr6:133389590-133390028
chr6	CG	SV	133991366	133992622	41	.	.	ID=2624;Type=deletion;Left=chr6:133991366-133991759+;Right=chr6:133992232-133992622+;Distance=866;DiscordantMatePairAlignments=41;LeftRepeat=ERVL-C1:LTR:ERVL;RightRepeat=ERVL-C1:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr6	CG	SV	133991366	133991759	41	+	.	ID=2624;Type=deletion;Left=chr6:133991366-133991759;Right=chr6:133992232-133992622
chr6	CG	SV	133992232	133992622	41	+	.	ID=2624;Type=deletion;Left=chr6:133991366-133991759;Right=chr6:133992232-133992622
chr6	CG	SV	134104632	134105354	19	.	.	ID=2623;Type=deletion;Left=chr6:134104632-134105006+;Right=chr6:134105112-134105354+;Distance=480;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	134104632	134105006	19	+	.	ID=2623;Type=deletion;Left=chr6:134104632-134105006;Right=chr6:134105112-134105354
chr6	CG	SV	134105112	134105354	19	+	.	ID=2623;Type=deletion;Left=chr6:134104632-134105006;Right=chr6:134105112-134105354
chr6	CG	SV	134310673	134311904	320	.	.	ID=2622;Type=deletion;Left=chr6:134310673-134311180+;Right=chr6:134311421-134311904+;Distance=748;DiscordantMatePairAlignments=320;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66832735 (chr6:134310669-134311417);Frequency=1.00
chr6	CG	SV	134310673	134311180	320	+	.	ID=2622;Type=deletion;Left=chr6:134310673-134311180;Right=chr6:134311421-134311904
chr6	CG	SV	134311421	134311904	320	+	.	ID=2622;Type=deletion;Left=chr6:134310673-134311180;Right=chr6:134311421-134311904
chr6	CG	SV	137355387	137356299	60	.	.	ID=2616;Type=deletion;Left=chr6:137355387-137355869+;Right=chr6:137355880-137356299+;Distance=493;DiscordantMatePairAlignments=60;LeftRepeat=L1MC:LINE:L1;RightRepeat=;LeftGenes=NR_027994:-;RightGenes=NR_027994:-;XRef=rs67777601 (chr6:137355386-137355879);Frequency=1.00
chr6	CG	SV	137355387	137355869	60	+	.	ID=2616;Type=deletion;Left=chr6:137355387-137355869;Right=chr6:137355880-137356299
chr6	CG	SV	137355880	137356299	60	+	.	ID=2616;Type=deletion;Left=chr6:137355387-137355869;Right=chr6:137355880-137356299
chr6	CG	SV	138141501	138155014	39	.	.	ID=969;Type=tandem-duplication;Left=chr6:138141501-138141828-;Right=chr6:138154466-138155014-;Distance=13186;DiscordantMatePairAlignments=39;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	138141501	138141828	39	-	.	ID=969;Type=tandem-duplication;Left=chr6:138141501-138141828;Right=chr6:138154466-138155014
chr6	CG	SV	138154466	138155014	39	-	.	ID=969;Type=tandem-duplication;Left=chr6:138141501-138141828;Right=chr6:138154466-138155014
chr6	CG	SV	143290758	143296373	62	.	.	ID=281;Type=probable-inversion;Left=chr6:143290758-143291260-;Right=chr6:143295957-143296373+;Distance=4697;DiscordantMatePairAlignments=62;LeftRepeat=;RightRepeat=;LeftGenes=NM_006734:-;RightGenes=NM_006734:-;XRef=;Frequency=0.00
chr6	CG	SV	143290758	143291260	62	-	.	ID=281;Type=probable-inversion;Left=chr6:143290758-143291260;Right=chr6:143295957-143296373
chr6	CG	SV	143295957	143296373	62	-	.	ID=281;Type=probable-inversion;Left=chr6:143290758-143291260;Right=chr6:143295957-143296373
chr6	CG	SV	151527818	151529013	13	.	.	ID=2614;Type=deletion;Left=chr6:151527818-151528268+;Right=chr6:151528889-151529013+;Distance=1071;DiscordantMatePairAlignments=13;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr6	CG	SV	151527818	151528268	13	+	.	ID=2614;Type=deletion;Left=chr6:151527818-151528268;Right=chr6:151528889-151529013
chr6	CG	SV	151528889	151529013	13	+	.	ID=2614;Type=deletion;Left=chr6:151527818-151528268;Right=chr6:151528889-151529013
chr6	CG	SV	153071671	153075922	46	.	.	ID=2613;Type=deletion;Left=chr6:153071671-153071979+;Right=chr6:153075489-153075922+;Distance=3818;DiscordantMatePairAlignments=46;LeftRepeat=L1MEb:LINE:L1;RightRepeat=L1MEb:LINE:L1;LeftGenes=NM_025107:+;RightGenes=NM_025107:+;XRef=;Frequency=1.00
chr6	CG	SV	153071671	153071979	46	+	.	ID=2613;Type=deletion;Left=chr6:153071671-153071979;Right=chr6:153075489-153075922
chr6	CG	SV	153075489	153075922	46	+	.	ID=2613;Type=deletion;Left=chr6:153071671-153071979;Right=chr6:153075489-153075922
chr6	CG	SV	154488622	154489343	15	.	.	ID=2612;Type=deletion;Left=chr6:154488622-154489058+;Right=chr6:154488944-154489343+;Distance=322;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_001008503:+;RightGenes=NM_001008503:+;XRef=rs70979783 (chr6:154488622-154488944);Frequency=1.00
chr6	CG	SV	154488622	154489058	15	+	.	ID=2612;Type=deletion;Left=chr6:154488622-154489058;Right=chr6:154488944-154489343
chr6	CG	SV	154488944	154489343	15	+	.	ID=2612;Type=deletion;Left=chr6:154488622-154489058;Right=chr6:154488944-154489343
chr6	CG	SV	157288318	157305797	49	.	.	ID=967;Type=tandem-duplication;Left=chr6:157288318-157288728-;Right=chr6:157305345-157305797-;Distance=17069;DiscordantMatePairAlignments=49;LeftRepeat=;RightRepeat=;LeftGenes=NM_017519:+;NM_020732:+;NM_175863:+;RightGenes=NM_017519:+;NM_020732:+;NM_175863:+;XRef=;Frequency=0.00
chr6	CG	SV	157288318	157288728	49	-	.	ID=967;Type=tandem-duplication;Left=chr6:157288318-157288728;Right=chr6:157305345-157305797
chr6	CG	SV	157305345	157305797	49	-	.	ID=967;Type=tandem-duplication;Left=chr6:157288318-157288728;Right=chr6:157305345-157305797
chr6	CG	SV	158468270	158469555	123	.	.	ID=2611;Type=deletion;Left=chr6:158468270-158468663+;Right=chr6:158469070-158469555+;Distance=800;DiscordantMatePairAlignments=123;LeftRepeat=;RightRepeat=;LeftGenes=NM_032861:-;RightGenes=NM_032861:-;XRef=rs68179956 (chr6:158468270-158469070);Frequency=1.00
chr6	CG	SV	158468270	158468663	123	+	.	ID=2611;Type=deletion;Left=chr6:158468270-158468663;Right=chr6:158469070-158469555
chr6	CG	SV	158469070	158469555	123	+	.	ID=2611;Type=deletion;Left=chr6:158468270-158468663;Right=chr6:158469070-158469555
chr6	CG	SV	159046017	159046632	24	.	.	ID=2609;Type=deletion;Left=chr6:159046017-159046483+;Right=chr6:159046429-159046632+;Distance=412;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;Tandem period 51;LeftGenes=NM_001009991:+;RightGenes=NM_001009991:+;XRef=;Frequency=0.24
chr6	CG	SV	159046017	159046483	24	+	.	ID=2609;Type=deletion;Left=chr6:159046017-159046483;Right=chr6:159046429-159046632
chr6	CG	SV	159046429	159046632	24	+	.	ID=2609;Type=deletion;Left=chr6:159046017-159046483;Right=chr6:159046429-159046632
chr6	CG	SV	159572115	159572866	11	.	.	ID=2608;Type=deletion;Left=chr6:159572115-159572523+;Right=chr6:159572428-159572866+;Distance=313;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_032532:+;RightGenes=NM_032532:+;XRef=rs67238208 (chr6:159572115-159572428);Frequency=1.00
chr6	CG	SV	159572115	159572523	11	+	.	ID=2608;Type=deletion;Left=chr6:159572115-159572523;Right=chr6:159572428-159572866
chr6	CG	SV	159572428	159572866	11	+	.	ID=2608;Type=deletion;Left=chr6:159572115-159572523;Right=chr6:159572428-159572866
chr6	CG	SV	159586768	159587633	19	.	.	ID=2607;Type=deletion;Left=chr6:159586768-159587163+;Right=chr6:159587091-159587633+;Distance=323;DiscordantMatePairAlignments=19;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_032532:+;RightGenes=NM_032532:+;XRef=rs68008895 (chr6:159586768-159587091);Frequency=1.00
chr6	CG	SV	159586768	159587163	19	+	.	ID=2607;Type=deletion;Left=chr6:159586768-159587163;Right=chr6:159587091-159587633
chr6	CG	SV	159587091	159587633	19	+	.	ID=2607;Type=deletion;Left=chr6:159586768-159587163;Right=chr6:159587091-159587633
chr6	CG	SV	161561694	162146549	68	.	.	ID=2606;Type=deletion;Left=chr6:161561694-161562106+;Right=chr6:162146100-162146549+;Distance=584406;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=;LeftGenes=NM_020133:-;RightGenes=NM_004562:-;NM_013987:-;NM_013988:-;XRef=;Frequency=0.00
chr6	CG	SV	161561694	161562106	68	+	.	ID=2606;Type=deletion;Left=chr6:161561694-161562106;Right=chr6:162146100-162146549
chr6	CG	SV	162146100	162146549	68	+	.	ID=2606;Type=deletion;Left=chr6:161561694-161562106;Right=chr6:162146100-162146549
chr6	CG	SV	165644659	165652613	34	.	.	ID=2603;Type=deletion;Left=chr6:165644659-165645151+;Right=chr6:165652125-165652613+;Distance=7466;DiscordantMatePairAlignments=34;LeftRepeat=LTR46:LTR:ERV1;RightRepeat=L1PA8:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72196192 (chr6:165644656-165652122);Frequency=0.88
chr6	CG	SV	165644659	165645151	34	+	.	ID=2603;Type=deletion;Left=chr6:165644659-165645151;Right=chr6:165652125-165652613
chr6	CG	SV	165652125	165652613	34	+	.	ID=2603;Type=deletion;Left=chr6:165644659-165645151;Right=chr6:165652125-165652613
chr6	CG	SV	167408060	167410063	73	.	.	ID=2601;Type=deletion;Left=chr6:167408060-167408457+;Right=chr6:167409592-167410063+;Distance=1532;DiscordantMatePairAlignments=73;LeftRepeat=L1MEe:LINE:L1;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem CTTC;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	167408060	167408457	73	+	.	ID=2601;Type=deletion;Left=chr6:167408060-167408457;Right=chr6:167409592-167410063
chr6	CG	SV	167409592	167410063	73	+	.	ID=2601;Type=deletion;Left=chr6:167408060-167408457;Right=chr6:167409592-167410063
chr6	CG	SV	167794664	167795422	14	.	.	ID=959;Type=tandem-duplication;Left=chr6:167794664-167794941-;Right=chr6:167795055-167795422-;Distance=481;DiscordantMatePairAlignments=14;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GT;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GT;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr6	CG	SV	167794664	167794941	14	-	.	ID=959;Type=tandem-duplication;Left=chr6:167794664-167794941;Right=chr6:167795055-167795422
chr6	CG	SV	167795055	167795422	14	-	.	ID=959;Type=tandem-duplication;Left=chr6:167794664-167794941;Right=chr6:167795055-167795422
chr6	CG	SV	168459864	168461851	20	.	.	ID=2600;Type=deletion;Left=chr6:168459864-168460103+;Right=chr6:168461695-168461851+;Distance=1831;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;Tandem period 109;RightRepeat=Self chain;Tandem period 109;LeftGenes=NM_214462:-;RightGenes=NM_214462:-;XRef=rs71731358 (chr6:168459767-168461373);Frequency=0.71
chr6	CG	SV	168459864	168460103	20	+	.	ID=2600;Type=deletion;Left=chr6:168459864-168460103;Right=chr6:168461695-168461851
chr6	CG	SV	168461695	168461851	20	+	.	ID=2600;Type=deletion;Left=chr6:168459864-168460103;Right=chr6:168461695-168461851
chr6	CG	SV	169056269	169056416	10	.	.	ID=956;Type=tandem-duplication;Left=chr6:169056269-169056342-;Right=chr6:169056304-169056416-;Distance=74;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	169056269	169056342	10	-	.	ID=956;Type=tandem-duplication;Left=chr6:169056269-169056342;Right=chr6:169056304-169056416
chr6	CG	SV	169056304	169056416	10	-	.	ID=956;Type=tandem-duplication;Left=chr6:169056269-169056342;Right=chr6:169056304-169056416
chr6	CG	SV	169951948	169952702	35	.	.	ID=2598;Type=deletion;Left=chr6:169951948-169952353+;Right=chr6:169952331-169952702+;Distance=383;DiscordantMatePairAlignments=35;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.25
chr6	CG	SV	169951948	169952353	35	+	.	ID=2598;Type=deletion;Left=chr6:169951948-169952353;Right=chr6:169952331-169952702
chr6	CG	SV	169952331	169952702	35	+	.	ID=2598;Type=deletion;Left=chr6:169951948-169952353;Right=chr6:169952331-169952702
chr6	CG	SV	170603782	170604138	58	.	.	ID=955;Type=tandem-duplication;Left=chr6:170603782-170603905-;Right=chr6:170603871-170604138-;Distance=233;DiscordantMatePairAlignments=58;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 12;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GT;Tandem GTGAGT;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr6	CG	SV	170603782	170603905	58	-	.	ID=955;Type=tandem-duplication;Left=chr6:170603782-170603905;Right=chr6:170603871-170604138
chr6	CG	SV	170603871	170604138	58	-	.	ID=955;Type=tandem-duplication;Left=chr6:170603782-170603905;Right=chr6:170603871-170604138
chr7	CG	SV	319418	321322	18	.	.	ID=2596;Type=deletion;Left=chr7:319418-320008+;Right=chr7:321081-321322+;Distance=1663;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;Tandem period 119;Tandem period 178;Tandem period 59;RightRepeat=Self chain;Tandem period 119;Tandem period 178;Tandem period 59;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr7	CG	SV	319418	320008	18	+	.	ID=2596;Type=deletion;Left=chr7:319418-320008;Right=chr7:321081-321322
chr7	CG	SV	321081	321322	18	+	.	ID=2596;Type=deletion;Left=chr7:319418-320008;Right=chr7:321081-321322
chr7	CG	SV	572307	572826	19	.	.	ID=954;Type=tandem-duplication;Left=chr7:572307-572546-;Right=chr7:572602-572826-;Distance=280;DiscordantMatePairAlignments=19;LeftRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;(CAT)n:Simple_repeat:Simple_repeat;Self chain;Tandem TCA;Tandem period 12;Tandem period 9;RightRepeat=(CAT)n:Simple_repeat:Simple_repeat;Self chain;Tandem TCA;Tandem period 12;Tandem period 15;Tandem period 9;LeftGenes=NM_001164758:-;NM_001164759:-;NM_001164760:-;NM_001164761:-;NM_001164762:-;NM_002735:-;RightGenes=NM_001164758:-;NM_001164759:-;NM_001164760:-;NM_001164761:-;NM_001164762:-;NM_002735:-;XRef=;Frequency=1.00
chr7	CG	SV	572307	572546	19	-	.	ID=954;Type=tandem-duplication;Left=chr7:572307-572546;Right=chr7:572602-572826
chr7	CG	SV	572602	572826	19	-	.	ID=954;Type=tandem-duplication;Left=chr7:572307-572546;Right=chr7:572602-572826
chr7	CG	SV	1133906	1135936	24	.	.	ID=2592;Type=deletion;Left=chr7:1133906-1134264+;Right=chr7:1135668-1135936+;Distance=1762;DiscordantMatePairAlignments=24;LeftRepeat=AluSg/x:SINE:Alu;Self chain;Tandem period 46;RightRepeat=AluJo:SINE:Alu;Self chain;Tandem period 46;LeftGenes=NM_001134395:-;NM_001134396:-;NM_032350:-;RightGenes=NM_001134395:-;NM_001134396:-;NM_032350:-;XRef=;Frequency=0.47
chr7	CG	SV	1133906	1134264	24	+	.	ID=2592;Type=deletion;Left=chr7:1133906-1134264;Right=chr7:1135668-1135936
chr7	CG	SV	1135668	1135936	24	+	.	ID=2592;Type=deletion;Left=chr7:1133906-1134264;Right=chr7:1135668-1135936
chr7	CG	SV	1151599	1154652	44	.	.	ID=2591;Type=deletion;Left=chr7:1151599-1152043+;Right=chr7:1154189-1154652+;Distance=2590;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71703948 (chr7:1151590-1154180);Frequency=0.94
chr7	CG	SV	1151599	1152043	44	+	.	ID=2591;Type=deletion;Left=chr7:1151599-1152043;Right=chr7:1154189-1154652
chr7	CG	SV	1154189	1154652	44	+	.	ID=2591;Type=deletion;Left=chr7:1151599-1152043;Right=chr7:1154189-1154652
chr7	CG	SV	1162362	1163064	13	.	.	ID=2590;Type=deletion;Left=chr7:1162362-1162710+;Right=chr7:1162802-1163064+;Distance=440;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 63;RightRepeat=Self chain;LeftGenes=NM_182491:-;RightGenes=NM_182491:-;XRef=;Frequency=0.41
chr7	CG	SV	1162362	1162710	13	+	.	ID=2590;Type=deletion;Left=chr7:1162362-1162710;Right=chr7:1162802-1163064
chr7	CG	SV	1162802	1163064	13	+	.	ID=2590;Type=deletion;Left=chr7:1162362-1162710;Right=chr7:1162802-1163064
chr7	CG	SV	2931985	2932712	14	.	.	ID=2589;Type=deletion;Left=chr7:2931985-2932398+;Right=chr7:2932385-2932712+;Distance=400;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 33;RightRepeat=Self chain;Tandem period 33;LeftGenes=NM_032415:-;RightGenes=NM_032415:-;XRef=;Frequency=0.12
chr7	CG	SV	2931985	2932398	14	+	.	ID=2589;Type=deletion;Left=chr7:2931985-2932398;Right=chr7:2932385-2932712
chr7	CG	SV	2932385	2932712	14	+	.	ID=2589;Type=deletion;Left=chr7:2931985-2932398;Right=chr7:2932385-2932712
chr7	CG	SV	4047790	4049226	75	.	.	ID=2587;Type=deletion;Left=chr7:4047790-4048273+;Right=chr7:4048822-4049226+;Distance=1032;DiscordantMatePairAlignments=75;LeftRepeat=L1MC1:LINE:L1;RightRepeat=;LeftGenes=NM_152744:+;RightGenes=NM_152744:+;XRef=rs72449159 (chr7:4047790-4048822);Frequency=0.06
chr7	CG	SV	4047790	4048273	75	+	.	ID=2587;Type=deletion;Left=chr7:4047790-4048273;Right=chr7:4048822-4049226
chr7	CG	SV	4048822	4049226	75	+	.	ID=2587;Type=deletion;Left=chr7:4047790-4048273;Right=chr7:4048822-4049226
chr7	CG	SV	4089724	4089947	23	.	.	ID=952;Type=tandem-duplication;Left=chr7:4089724-4089812-;Right=chr7:4089823-4089947-;Distance=135;DiscordantMatePairAlignments=23;LeftRepeat=CT-rich:Low_complexity:Low_complexity;Tandem period 20;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem period 20;LeftGenes=NM_152744:+;RightGenes=NM_152744:+;XRef=;Frequency=0.15
chr7	CG	SV	4089724	4089812	23	-	.	ID=952;Type=tandem-duplication;Left=chr7:4089724-4089812;Right=chr7:4089823-4089947
chr7	CG	SV	4089823	4089947	23	-	.	ID=952;Type=tandem-duplication;Left=chr7:4089724-4089812;Right=chr7:4089823-4089947
chr7	CG	SV	9601171	9602891	22	.	.	ID=2586;Type=deletion;Left=chr7:9601171-9601483+;Right=chr7:9602514-9602891+;Distance=1343;DiscordantMatePairAlignments=22;LeftRepeat=THE1D-int:LTR:MaLR;RightRepeat=THE1D-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs71014005 (chr7:9601175-9602518);Frequency=1.00
chr7	CG	SV	9601171	9601483	22	+	.	ID=2586;Type=deletion;Left=chr7:9601171-9601483;Right=chr7:9602514-9602891
chr7	CG	SV	9602514	9602891	22	+	.	ID=2586;Type=deletion;Left=chr7:9601171-9601483;Right=chr7:9602514-9602891
chr7	CG	SV	10470841	10472945	10	.	.	ID=2585;Type=deletion;Left=chr7:10470841-10471141+;Right=chr7:10472675-10472945+;Distance=1834;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem T;RightRepeat=MSTA:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr7	CG	SV	10470841	10471141	10	+	.	ID=2585;Type=deletion;Left=chr7:10470841-10471141;Right=chr7:10472675-10472945
chr7	CG	SV	10472675	10472945	10	+	.	ID=2585;Type=deletion;Left=chr7:10470841-10471141;Right=chr7:10472675-10472945
chr7	CG	SV	16138298	16141044	45	.	.	ID=2582;Type=deletion;Left=chr7:16138298-16138651+;Right=chr7:16140597-16141044+;Distance=2299;DiscordantMatePairAlignments=45;LeftRepeat=MLT1A0-int:LTR:MaLR;RightRepeat=Charlie3:DNA:MER1_type;LeftGenes=NM_001101417:-;NM_001101426:-;RightGenes=NM_001101417:-;NM_001101426:-;XRef=rs67864719 (chr7:16138298-16140597);Frequency=0.71
chr7	CG	SV	16138298	16138651	45	+	.	ID=2582;Type=deletion;Left=chr7:16138298-16138651;Right=chr7:16140597-16141044
chr7	CG	SV	16140597	16141044	45	+	.	ID=2582;Type=deletion;Left=chr7:16138298-16138651;Right=chr7:16140597-16141044
chr7	CG	SV	18091699	18149879	23	.	.	ID=951;Type=tandem-duplication;Left=chr7:18091699-18091940-;Right=chr7:18149458-18149879-;Distance=57939;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	18091699	18091940	23	-	.	ID=951;Type=tandem-duplication;Left=chr7:18091699-18091940;Right=chr7:18149458-18149879
chr7	CG	SV	18149458	18149879	23	-	.	ID=951;Type=tandem-duplication;Left=chr7:18091699-18091940;Right=chr7:18149458-18149879
chr7	CG	SV	22401328	22403679	149	.	.	ID=2581;Type=deletion;Left=chr7:22401328-22401825+;Right=chr7:22403288-22403679+;Distance=1960;DiscordantMatePairAlignments=149;LeftRepeat=LOR1a:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71839705 (chr7:22401325-22403285);Frequency=0.71
chr7	CG	SV	22401328	22401825	149	+	.	ID=2581;Type=deletion;Left=chr7:22401328-22401825;Right=chr7:22403288-22403679
chr7	CG	SV	22403288	22403679	149	+	.	ID=2581;Type=deletion;Left=chr7:22401328-22401825;Right=chr7:22403288-22403679
chr7	CG	SV	24004690	24006992	70	.	.	ID=2580;Type=deletion;Left=chr7:24004690-24005123+;Right=chr7:24006599-24006992+;Distance=1909;DiscordantMatePairAlignments=70;LeftRepeat=;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=rs68096632 (chr7:24004686-24006595);Frequency=0.94
chr7	CG	SV	24004690	24005123	70	+	.	ID=2580;Type=deletion;Left=chr7:24004690-24005123;Right=chr7:24006599-24006992
chr7	CG	SV	24006599	24006992	70	+	.	ID=2580;Type=deletion;Left=chr7:24004690-24005123;Right=chr7:24006599-24006992
chr7	CG	SV	24034636	24035045	13	.	.	ID=950;Type=tandem-duplication;Left=chr7:24034636-24034839-;Right=chr7:24034830-24035045-;Distance=206;DiscordantMatePairAlignments=13;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr7	CG	SV	24034636	24034839	13	-	.	ID=950;Type=tandem-duplication;Left=chr7:24034636-24034839;Right=chr7:24034830-24035045
chr7	CG	SV	24034830	24035045	13	-	.	ID=950;Type=tandem-duplication;Left=chr7:24034636-24034839;Right=chr7:24034830-24035045
chr7	CG	SV	25011138	25011976	10	.	.	ID=2578;Type=deletion;Left=chr7:25011138-25011310+;Right=chr7:25011467-25011976+;Distance=329;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs10530097 (chr7:25011138-25011467);Frequency=1.00
chr7	CG	SV	25011138	25011310	10	+	.	ID=2578;Type=deletion;Left=chr7:25011138-25011310;Right=chr7:25011467-25011976
chr7	CG	SV	25011467	25011976	10	+	.	ID=2578;Type=deletion;Left=chr7:25011138-25011310;Right=chr7:25011467-25011976
chr7	CG	SV	25023986	25026824	44	.	.	ID=2577;Type=deletion;Left=chr7:25023986-25024376+;Right=chr7:25026395-25026824+;Distance=2409;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr7	CG	SV	25023986	25024376	44	+	.	ID=2577;Type=deletion;Left=chr7:25023986-25024376;Right=chr7:25026395-25026824
chr7	CG	SV	25026395	25026824	44	+	.	ID=2577;Type=deletion;Left=chr7:25023986-25024376;Right=chr7:25026395-25026824
chr7	CG	SV	28180829	28181704	66	.	.	ID=2574;Type=deletion;Left=chr7:28180829-28181208+;Right=chr7:28181193-28181704+;Distance=364;DiscordantMatePairAlignments=66;LeftRepeat=;RightRepeat=;LeftGenes=NM_175061:-;RightGenes=NM_175061:-;XRef=rs67581067 (chr7:28180829-28181193);Frequency=0.76
chr7	CG	SV	28180829	28181208	66	+	.	ID=2574;Type=deletion;Left=chr7:28180829-28181208;Right=chr7:28181193-28181704
chr7	CG	SV	28181193	28181704	66	+	.	ID=2574;Type=deletion;Left=chr7:28180829-28181208;Right=chr7:28181193-28181704
chr7	CG	SV	28540836	28542063	39	.	.	ID=2573;Type=deletion;Left=chr7:28540836-28541253+;Right=chr7:28541686-28542063+;Distance=850;DiscordantMatePairAlignments=39;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_004904:+;NM_182898:+;NM_182899:+;RightGenes=NM_004904:+;NM_182898:+;NM_182899:+;XRef=;Frequency=0.59
chr7	CG	SV	28540836	28541253	39	+	.	ID=2573;Type=deletion;Left=chr7:28540836-28541253;Right=chr7:28541686-28542063
chr7	CG	SV	28541686	28542063	39	+	.	ID=2573;Type=deletion;Left=chr7:28540836-28541253;Right=chr7:28541686-28542063
chr7	CG	SV	31282268	31285898	21	.	.	ID=2571;Type=deletion;Left=chr7:31282268-31282729+;Right=chr7:31285702-31285898+;Distance=3434;DiscordantMatePairAlignments=21;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr7	CG	SV	31282268	31282729	21	+	.	ID=2571;Type=deletion;Left=chr7:31282268-31282729;Right=chr7:31285702-31285898
chr7	CG	SV	31285702	31285898	21	+	.	ID=2571;Type=deletion;Left=chr7:31282268-31282729;Right=chr7:31285702-31285898
chr7	CG	SV	31553153	31558863	27	.	.	ID=277;Type=complex;Left=chr7:31553153-31553296-;Right=chr7:31558520-31558863+;Distance=5224;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=NM_194300:+;RightGenes=NM_194300:+;XRef=;Frequency=0.59
chr7	CG	SV	31553153	31553296	27	-	.	ID=277;Type=complex;Left=chr7:31553153-31553296;Right=chr7:31558520-31558863
chr7	CG	SV	31558520	31558863	27	-	.	ID=277;Type=complex;Left=chr7:31553153-31553296;Right=chr7:31558520-31558863
chr7	CG	SV	31553554	31556796	52	.	.	ID=3604;Type=complex;Left=chr7:31553554-31553812+;Right=chr7:31556452-31556796-;Distance=3242;DiscordantMatePairAlignments=52;LeftRepeat=Self chain;THE1C:LTR:MaLR;RightRepeat=Self chain;LeftGenes=NM_194300:+;RightGenes=NM_194300:+;XRef=;Frequency=0.59
chr7	CG	SV	31553554	31553812	52	+	.	ID=3604;Type=complex;Left=chr7:31553554-31553812;Right=chr7:31556452-31556796
chr7	CG	SV	31556452	31556796	52	+	.	ID=3604;Type=complex;Left=chr7:31553554-31553812;Right=chr7:31556452-31556796
chr7	CG	SV	32356690	32360044	69	.	.	ID=2569;Type=deletion;Left=chr7:32356690-32357157+;Right=chr7:32359637-32360044+;Distance=2947;DiscordantMatePairAlignments=69;LeftRepeat=(TA)n:Simple_repeat:Simple_repeat;Self chain;Tandem AT;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71014019 (chr7:32356690-32359651);Frequency=0.94
chr7	CG	SV	32356690	32357157	69	+	.	ID=2569;Type=deletion;Left=chr7:32356690-32357157;Right=chr7:32359637-32360044
chr7	CG	SV	32359637	32360044	69	+	.	ID=2569;Type=deletion;Left=chr7:32356690-32357157;Right=chr7:32359637-32360044
chr7	CG	SV	33865381	33866130	26	.	.	ID=2567;Type=deletion;Left=chr7:33865381-33865760+;Right=chr7:33865712-33866130+;Distance=331;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6150069 (chr7:33865381-33865712);Frequency=1.00
chr7	CG	SV	33865381	33865760	26	+	.	ID=2567;Type=deletion;Left=chr7:33865381-33865760;Right=chr7:33865712-33866130
chr7	CG	SV	33865712	33866130	26	+	.	ID=2567;Type=deletion;Left=chr7:33865381-33865760;Right=chr7:33865712-33866130
chr7	CG	SV	37965041	37965755	15	.	.	ID=2565;Type=deletion;Left=chr7:37965041-37965550+;Right=chr7:37965356-37965755+;Distance=315;DiscordantMatePairAlignments=15;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67459099 (chr7:37965041-37965356);Frequency=1.00
chr7	CG	SV	37965041	37965550	15	+	.	ID=2565;Type=deletion;Left=chr7:37965041-37965550;Right=chr7:37965356-37965755
chr7	CG	SV	37965356	37965755	15	+	.	ID=2565;Type=deletion;Left=chr7:37965041-37965550;Right=chr7:37965356-37965755
chr7	CG	SV	47674895	47676054	46	.	.	ID=947;Type=tandem-duplication;Left=chr7:47674895-47675243-;Right=chr7:47675618-47676054-;Distance=811;DiscordantMatePairAlignments=46;LeftRepeat=MLT1B:LTR:MaLR;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr7	CG	SV	47674895	47675243	46	-	.	ID=947;Type=tandem-duplication;Left=chr7:47674895-47675243;Right=chr7:47675618-47676054
chr7	CG	SV	47675618	47676054	46	-	.	ID=947;Type=tandem-duplication;Left=chr7:47674895-47675243;Right=chr7:47675618-47676054
chr7	CG	SV	47974703	47975089	38	+	.	ID=1821;Type=interchromosomal;Left=chr7:47974703-47975089+;Right=chr17:44224376-44224726+;Distance=;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=MER5B:DNA:MER1_type;Self chain;LeftGenes=NM_004507:-;RightGenes=NM_001130918:-;NM_173623:-;XRef=;Frequency=0.00
chr17	CG	SV	44224376	44224726	38	+	.	ID=1821;Type=interchromosomal;Left=chr7:47974703-47975089+;Right=chr17:44224376-44224726+;Distance=;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=MER5B:DNA:MER1_type;Self chain;LeftGenes=NM_004507:-;RightGenes=NM_001130918:-;NM_173623:-;XRef=;Frequency=0.00
chr7	CG	SV	54563980	54565406	27	.	.	ID=2562;Type=deletion;Left=chr7:54563980-54564409+;Right=chr7:54564927-54565406+;Distance=947;DiscordantMatePairAlignments=27;LeftRepeat=L1MC3:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72118222 (chr7:54563980-54564927);Frequency=0.12
chr7	CG	SV	54563980	54564409	27	+	.	ID=2562;Type=deletion;Left=chr7:54563980-54564409;Right=chr7:54564927-54565406
chr7	CG	SV	54564927	54565406	27	+	.	ID=2562;Type=deletion;Left=chr7:54563980-54564409;Right=chr7:54564927-54565406
chr7	CG	SV	55254252	55256982	25	.	.	ID=2561;Type=deletion;Left=chr7:55254252-55254437+;Right=chr7:55256570-55256982+;Distance=2318;DiscordantMatePairAlignments=25;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71805120 (chr7:55254237-55256555);Frequency=0.82
chr7	CG	SV	55254252	55254437	25	+	.	ID=2561;Type=deletion;Left=chr7:55254252-55254437;Right=chr7:55256570-55256982
chr7	CG	SV	55256570	55256982	25	+	.	ID=2561;Type=deletion;Left=chr7:55254252-55254437;Right=chr7:55256570-55256982
chr7	CG	SV	63953259	63955874	27	.	.	ID=2558;Type=deletion;Left=chr7:63953259-63953684+;Right=chr7:63955510-63955874+;Distance=2251;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71014041 (chr7:63953259-63955510);Frequency=1.00
chr7	CG	SV	63953259	63953684	27	+	.	ID=2558;Type=deletion;Left=chr7:63953259-63953684;Right=chr7:63955510-63955874
chr7	CG	SV	63955510	63955874	27	+	.	ID=2558;Type=deletion;Left=chr7:63953259-63953684;Right=chr7:63955510-63955874
chr7	CG	SV	67273208	97921137	32	.	.	ID=3598;Type=probable-inversion;Left=chr7:67273208-67273558+;Right=chr7:97920483-97921137-;Distance=30647929;DiscordantMatePairAlignments=32;LeftRepeat=MER5A:DNA:MER1_type;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	67273208	67273558	32	+	.	ID=3598;Type=probable-inversion;Left=chr7:67273208-67273558;Right=chr7:97920483-97921137
chr7	CG	SV	97920483	97921137	32	+	.	ID=3598;Type=probable-inversion;Left=chr7:67273208-67273558;Right=chr7:97920483-97921137
chr7	CG	SV	67364377	67364890	10	.	.	ID=2555;Type=deletion;Left=chr7:67364377-67364791+;Right=chr7:67364697-67364890+;Distance=320;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	67364377	67364791	10	+	.	ID=2555;Type=deletion;Left=chr7:67364377-67364791;Right=chr7:67364697-67364890
chr7	CG	SV	67364697	67364890	10	+	.	ID=2555;Type=deletion;Left=chr7:67364377-67364791;Right=chr7:67364697-67364890
chr7	CG	SV	70058905	70076821	25	.	.	ID=3602;Type=complex;Left=chr7:70058905-70059244+;Right=chr7:70076417-70076821-;Distance=17916;DiscordantMatePairAlignments=25;LeftRepeat=MER4C:LTR:ERV1;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr7	CG	SV	70058905	70059244	25	+	.	ID=3602;Type=complex;Left=chr7:70058905-70059244;Right=chr7:70076417-70076821
chr7	CG	SV	70076417	70076821	25	+	.	ID=3602;Type=complex;Left=chr7:70058905-70059244;Right=chr7:70076417-70076821
chr7	CG	SV	70063922	70077245	31	.	.	ID=276;Type=complex;Left=chr7:70063922-70064120-;Right=chr7:70076816-70077245+;Distance=12696;DiscordantMatePairAlignments=31;LeftRepeat=L1MEc:LINE:L1;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr7	CG	SV	70063922	70064120	31	-	.	ID=276;Type=complex;Left=chr7:70063922-70064120;Right=chr7:70076816-70077245
chr7	CG	SV	70076816	70077245	31	-	.	ID=276;Type=complex;Left=chr7:70063922-70064120;Right=chr7:70076816-70077245
chr7	CG	SV	70849839	70851261	48	.	.	ID=2552;Type=deletion;Left=chr7:70849839-70850231+;Right=chr7:70850895-70851261+;Distance=1056;DiscordantMatePairAlignments=48;LeftRepeat=AluSp:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	70849839	70850231	48	+	.	ID=2552;Type=deletion;Left=chr7:70849839-70850231;Right=chr7:70850895-70851261
chr7	CG	SV	70850895	70851261	48	+	.	ID=2552;Type=deletion;Left=chr7:70849839-70850231;Right=chr7:70850895-70851261
chr7	CG	SV	71284090	71374368	27	.	.	ID=944;Type=tandem-duplication;Left=chr7:71284090-71284485-;Right=chr7:71374126-71374368-;Distance=89883;DiscordantMatePairAlignments=27;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=FRAM:SINE:Alu;Self chain;LeftGenes=NM_001017440:-;NM_031468:-;RightGenes=NM_001017440:-;NM_031468:-;XRef=;Frequency=0.00
chr7	CG	SV	71284090	71284485	27	-	.	ID=944;Type=tandem-duplication;Left=chr7:71284090-71284485;Right=chr7:71374126-71374368
chr7	CG	SV	71374126	71374368	27	-	.	ID=944;Type=tandem-duplication;Left=chr7:71284090-71284485;Right=chr7:71374126-71374368
chr7	CG	SV	87929243	87930101	36	.	.	ID=2547;Type=deletion;Left=chr7:87929243-87929703+;Right=chr7:87929693-87930101+;Distance=450;DiscordantMatePairAlignments=36;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66468286 (chr7:87929235-87929685);Frequency=1.00
chr7	CG	SV	87929243	87929703	36	+	.	ID=2547;Type=deletion;Left=chr7:87929243-87929703;Right=chr7:87929693-87930101
chr7	CG	SV	87929693	87930101	36	+	.	ID=2547;Type=deletion;Left=chr7:87929243-87929703;Right=chr7:87929693-87930101
chr7	CG	SV	89392108	89392761	22	.	.	ID=2546;Type=deletion;Left=chr7:89392108-89392543+;Right=chr7:89392528-89392761+;Distance=420;DiscordantMatePairAlignments=22;LeftRepeat=GA-rich:Low_complexity:Low_complexity;Tandem period 35;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71014061 (chr7:89392102-89392487);Frequency=1.00
chr7	CG	SV	89392108	89392543	22	+	.	ID=2546;Type=deletion;Left=chr7:89392108-89392543;Right=chr7:89392528-89392761
chr7	CG	SV	89392528	89392761	22	+	.	ID=2546;Type=deletion;Left=chr7:89392108-89392543;Right=chr7:89392528-89392761
chr7	CG	SV	93254877	93261282	11	.	.	ID=2542;Type=deletion;Left=chr7:93254877-93255026+;Right=chr7:93260941-93261282+;Distance=6064;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67308864 (chr7:93254877-93260941);Frequency=0.94
chr7	CG	SV	93254877	93255026	11	+	.	ID=2542;Type=deletion;Left=chr7:93254877-93255026;Right=chr7:93260941-93261282
chr7	CG	SV	93260941	93261282	11	+	.	ID=2542;Type=deletion;Left=chr7:93254877-93255026;Right=chr7:93260941-93261282
chr7	CG	SV	95224204	95224899	13	.	.	ID=2540;Type=deletion;Left=chr7:95224204-95224668+;Right=chr7:95224535-95224899+;Distance=331;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6150237 (chr7:95224189-95224520);Frequency=0.88
chr7	CG	SV	95224204	95224668	13	+	.	ID=2540;Type=deletion;Left=chr7:95224204-95224668;Right=chr7:95224535-95224899
chr7	CG	SV	95224535	95224899	13	+	.	ID=2540;Type=deletion;Left=chr7:95224204-95224668;Right=chr7:95224535-95224899
chr7	CG	SV	96313837	96320327	64	.	.	ID=2538;Type=deletion;Left=chr7:96313837-96314200+;Right=chr7:96319945-96320327+;Distance=6108;DiscordantMatePairAlignments=64;LeftRepeat=Self chain;T-rich:Low_complexity:Low_complexity;RightRepeat=L1MD2:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71014064 (chr7:96313837-96319945);Frequency=1.00
chr7	CG	SV	96313837	96314200	64	+	.	ID=2538;Type=deletion;Left=chr7:96313837-96314200;Right=chr7:96319945-96320327
chr7	CG	SV	96319945	96320327	64	+	.	ID=2538;Type=deletion;Left=chr7:96313837-96314200;Right=chr7:96319945-96320327
chr7	CG	SV	100388307	100389151	11	.	.	ID=942;Type=distal-duplication;Left=chr7:100388307-100388540-;Right=chr7:100388951-100389151-;Distance=611;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;Tandem period 51;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	100388307	100388540	11	-	.	ID=942;Type=distal-duplication;Left=chr7:100388307-100388540;Right=chr7:100388951-100389151
chr7	CG	SV	100388951	100389151	11	-	.	ID=942;Type=distal-duplication;Left=chr7:100388307-100388540;Right=chr7:100388951-100389151
chr7	CG	SV	100388721	100389292	20	.	.	ID=2536;Type=distal-duplication;Left=chr7:100388721-100389327+;Right=chr7:100389180-100389292+;Distance=459;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;Tandem period 51;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	100388721	100389327	20	+	.	ID=2536;Type=distal-duplication;Left=chr7:100388721-100389327;Right=chr7:100389180-100389292
chr7	CG	SV	100389180	100389292	20	+	.	ID=2536;Type=distal-duplication;Left=chr7:100388721-100389327;Right=chr7:100389180-100389292
chr7	CG	SV	100400459	100401394	13	.	.	ID=2535;Type=deletion;Left=chr7:100400459-100400864+;Right=chr7:100401199-100401394+;Distance=740;DiscordantMatePairAlignments=13;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_001164462:+;RightGenes=NM_001164462:+;XRef=;Frequency=1.00
chr7	CG	SV	100400459	100400864	13	+	.	ID=2535;Type=deletion;Left=chr7:100400459-100400864;Right=chr7:100401199-100401394
chr7	CG	SV	100401199	100401394	13	+	.	ID=2535;Type=deletion;Left=chr7:100400459-100400864;Right=chr7:100401199-100401394
chr7	CG	SV	100787986	100790780	40	.	.	ID=2534;Type=deletion;Left=chr7:100787986-100788355+;Right=chr7:100790532-100790780+;Distance=2546;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs66862807 (chr7:100787986-100790532);Frequency=0.41
chr7	CG	SV	100787986	100788355	40	+	.	ID=2534;Type=deletion;Left=chr7:100787986-100788355;Right=chr7:100790532-100790780
chr7	CG	SV	100790532	100790780	40	+	.	ID=2534;Type=deletion;Left=chr7:100787986-100788355;Right=chr7:100790532-100790780
chr7	CG	SV	100845908	100847373	69	.	.	ID=2533;Type=deletion;Left=chr7:100845908-100846398+;Right=chr7:100847017-100847373+;Distance=1109;DiscordantMatePairAlignments=69;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_133457:+;RightGenes=NM_133457:+;XRef=;Frequency=0.29
chr7	CG	SV	100845908	100846398	69	+	.	ID=2533;Type=deletion;Left=chr7:100845908-100846398;Right=chr7:100847017-100847373
chr7	CG	SV	100847017	100847373	69	+	.	ID=2533;Type=deletion;Left=chr7:100845908-100846398;Right=chr7:100847017-100847373
chr7	CG	SV	109223925	109241398	10	.	.	ID=2527;Type=deletion;Left=chr7:109223925-109224315+;Right=chr7:109241137-109241398+;Distance=17212;DiscordantMatePairAlignments=10;LeftRepeat=L1PA4:LINE:L1;RightRepeat=L1MD2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr7	CG	SV	109223925	109224315	10	+	.	ID=2527;Type=deletion;Left=chr7:109223925-109224315;Right=chr7:109241137-109241398
chr7	CG	SV	109241137	109241398	10	+	.	ID=2527;Type=deletion;Left=chr7:109223925-109224315;Right=chr7:109241137-109241398
chr7	CG	SV	113203401	113209809	77	.	.	ID=2524;Type=deletion;Left=chr7:113203401-113203826+;Right=chr7:113209447-113209809+;Distance=6046;DiscordantMatePairAlignments=77;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66950453 (chr7:113203397-113209443);Frequency=1.00
chr7	CG	SV	113203401	113203826	77	+	.	ID=2524;Type=deletion;Left=chr7:113203401-113203826;Right=chr7:113209447-113209809
chr7	CG	SV	113209447	113209809	77	+	.	ID=2524;Type=deletion;Left=chr7:113203401-113203826;Right=chr7:113209447-113209809
chr7	CG	SV	116629253	116630025	15	.	.	ID=2523;Type=deletion;Left=chr7:116629253-116629692+;Right=chr7:116629564-116630025+;Distance=311;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=NM_018412:+;NM_021908:+;NR_002332:+;RightGenes=NM_018412:+;NM_021908:+;NR_002332:+;XRef=rs10522424 (chr7:116629253-116629564);Frequency=0.71
chr7	CG	SV	116629253	116629692	15	+	.	ID=2523;Type=deletion;Left=chr7:116629253-116629692;Right=chr7:116629564-116630025
chr7	CG	SV	116629564	116630025	15	+	.	ID=2523;Type=deletion;Left=chr7:116629253-116629692;Right=chr7:116629564-116630025
chr7	CG	SV	118131048	118131826	36	.	.	ID=2522;Type=deletion;Left=chr7:118131048-118131477+;Right=chr7:118131403-118131826+;Distance=355;DiscordantMatePairAlignments=36;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=ERVL-E:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=rs72457038 (chr7:118131036-118131391);Frequency=1.00
chr7	CG	SV	118131048	118131477	36	+	.	ID=2522;Type=deletion;Left=chr7:118131048-118131477;Right=chr7:118131403-118131826
chr7	CG	SV	118131403	118131826	36	+	.	ID=2522;Type=deletion;Left=chr7:118131048-118131477;Right=chr7:118131403-118131826
chr7	CG	SV	118618484	118622304	38	.	.	ID=2521;Type=deletion;Left=chr7:118618484-118618851+;Right=chr7:118621990-118622304+;Distance=3506;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66490609 (chr7:118618495-118621990);Frequency=0.53
chr7	CG	SV	118618484	118618851	38	+	.	ID=2521;Type=deletion;Left=chr7:118618484-118618851;Right=chr7:118621990-118622304
chr7	CG	SV	118621990	118622304	38	+	.	ID=2521;Type=deletion;Left=chr7:118618484-118618851;Right=chr7:118621990-118622304
chr7	CG	SV	125052346	125053085	11	.	.	ID=2520;Type=deletion;Left=chr7:125052346-125052827+;Right=chr7:125052677-125053085+;Distance=331;DiscordantMatePairAlignments=11;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71709281 (chr7:125052336-125052667);Frequency=1.00
chr7	CG	SV	125052346	125052827	11	+	.	ID=2520;Type=deletion;Left=chr7:125052346-125052827;Right=chr7:125052677-125053085
chr7	CG	SV	125052677	125053085	11	+	.	ID=2520;Type=deletion;Left=chr7:125052346-125052827;Right=chr7:125052677-125053085
chr7	CG	SV	125833125	125839065	31	.	.	ID=2519;Type=deletion;Left=chr7:125833125-125833551+;Right=chr7:125838686-125839065+;Distance=5561;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=MLT1J:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs66526160 (chr7:125833122-125838683);Frequency=0.94
chr7	CG	SV	125833125	125833551	31	+	.	ID=2519;Type=deletion;Left=chr7:125833125-125833551;Right=chr7:125838686-125839065
chr7	CG	SV	125838686	125839065	31	+	.	ID=2519;Type=deletion;Left=chr7:125833125-125833551;Right=chr7:125838686-125839065
chr7	CG	SV	132758230	132759007	10	.	.	ID=2515;Type=deletion;Left=chr7:132758230-132758622+;Right=chr7:132758562-132759007+;Distance=332;DiscordantMatePairAlignments=10;LeftRepeat=AluYb9:SINE:Alu;RightRepeat=;LeftGenes=NM_001037126:+;NM_021807:+;RightGenes=NM_001037126:+;NM_021807:+;XRef=rs34260188 (chr7:132758230-132758562);Frequency=0.59
chr7	CG	SV	132758230	132758622	10	+	.	ID=2515;Type=deletion;Left=chr7:132758230-132758622;Right=chr7:132758562-132759007
chr7	CG	SV	132758562	132759007	10	+	.	ID=2515;Type=deletion;Left=chr7:132758230-132758622;Right=chr7:132758562-132759007
chr7	CG	SV	133435543	133449262	59	.	.	ID=2514;Type=deletion;Left=chr7:133435543-133435805+;Right=chr7:133448872-133449262+;Distance=13329;DiscordantMatePairAlignments=59;LeftRepeat=MLT1C:LTR:MaLR;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr7	CG	SV	133435543	133435805	59	+	.	ID=2514;Type=deletion;Left=chr7:133435543-133435805;Right=chr7:133448872-133449262
chr7	CG	SV	133448872	133449262	59	+	.	ID=2514;Type=deletion;Left=chr7:133435543-133435805;Right=chr7:133448872-133449262
chr7	CG	SV	134000547	134001237	27	.	.	ID=2513;Type=deletion;Left=chr7:134000547-134001013+;Right=chr7:134000970-134001237+;Distance=423;DiscordantMatePairAlignments=27;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001724:+;NM_199186:+;RightGenes=NM_001724:+;NM_199186:+;XRef=rs71828851 (chr7:134000539-134000962);Frequency=0.59
chr7	CG	SV	134000547	134001013	27	+	.	ID=2513;Type=deletion;Left=chr7:134000547-134001013;Right=chr7:134000970-134001237
chr7	CG	SV	134000970	134001237	27	+	.	ID=2513;Type=deletion;Left=chr7:134000547-134001013;Right=chr7:134000970-134001237
chr7	CG	SV	137946987	137948232	28	.	.	ID=2511;Type=deletion;Left=chr7:137946987-137947339+;Right=chr7:137947759-137948232+;Distance=772;DiscordantMatePairAlignments=28;LeftRepeat=L1MA5A:LINE:L1;RightRepeat=;LeftGenes=NM_001139456:-;NM_174959:-;RightGenes=NM_001139456:-;NM_174959:-;XRef=rs72467481 (chr7:137946996-137947763);Frequency=0.82
chr7	CG	SV	137946987	137947339	28	+	.	ID=2511;Type=deletion;Left=chr7:137946987-137947339;Right=chr7:137947759-137948232
chr7	CG	SV	137947759	137948232	28	+	.	ID=2511;Type=deletion;Left=chr7:137946987-137947339;Right=chr7:137947759-137948232
chr7	CG	SV	139827945	139835689	26	.	.	ID=934;Type=tandem-duplication;Left=chr7:139827945-139828055-;Right=chr7:139835306-139835689-;Distance=7634;DiscordantMatePairAlignments=26;LeftRepeat=LTR49:LTR:ERV1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr7	CG	SV	139827945	139828055	26	-	.	ID=934;Type=tandem-duplication;Left=chr7:139827945-139828055;Right=chr7:139835306-139835689
chr7	CG	SV	139835306	139835689	26	-	.	ID=934;Type=tandem-duplication;Left=chr7:139827945-139828055;Right=chr7:139835306-139835689
chr7	CG	SV	141726639	141727365	20	.	.	ID=2506;Type=deletion;Left=chr7:141726639-141727080+;Right=chr7:141726977-141727365+;Distance=338;DiscordantMatePairAlignments=20;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67244646 (chr7:141726629-141726967);Frequency=1.00
chr7	CG	SV	141726639	141727080	20	+	.	ID=2506;Type=deletion;Left=chr7:141726639-141727080;Right=chr7:141726977-141727365
chr7	CG	SV	141726977	141727365	20	+	.	ID=2506;Type=deletion;Left=chr7:141726639-141727080;Right=chr7:141726977-141727365
chr7	CG	SV	143468426	143475379	64	.	.	ID=2505;Type=deletion;Left=chr7:143468426-143468806+;Right=chr7:143475011-143475379+;Distance=6585;DiscordantMatePairAlignments=64;LeftRepeat=Self chain;RightRepeat=L1M3e:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	143468426	143468806	64	+	.	ID=2505;Type=deletion;Left=chr7:143468426-143468806;Right=chr7:143475011-143475379
chr7	CG	SV	143475011	143475379	64	+	.	ID=2505;Type=deletion;Left=chr7:143468426-143468806;Right=chr7:143475011-143475379
chr7	CG	SV	144547817	144552736	42	.	.	ID=2504;Type=deletion;Left=chr7:144547817-144548282+;Right=chr7:144552334-144552736+;Distance=4517;DiscordantMatePairAlignments=42;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr7	CG	SV	144547817	144548282	42	+	.	ID=2504;Type=deletion;Left=chr7:144547817-144548282;Right=chr7:144552334-144552736
chr7	CG	SV	144552334	144552736	42	+	.	ID=2504;Type=deletion;Left=chr7:144547817-144548282;Right=chr7:144552334-144552736
chr7	CG	SV	144634401	144650177	100	.	.	ID=2503;Type=deletion;Left=chr7:144634401-144634817+;Right=chr7:144649787-144650177+;Distance=15386;DiscordantMatePairAlignments=100;LeftRepeat=;RightRepeat=HERV16:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	144634401	144634817	100	+	.	ID=2503;Type=deletion;Left=chr7:144634401-144634817;Right=chr7:144649787-144650177
chr7	CG	SV	144649787	144650177	100	+	.	ID=2503;Type=deletion;Left=chr7:144634401-144634817;Right=chr7:144649787-144650177
chr7	CG	SV	147703799	147707622	38	.	.	ID=2502;Type=deletion;Left=chr7:147703799-147704199+;Right=chr7:147707259-147707622+;Distance=3460;DiscordantMatePairAlignments=38;LeftRepeat=AluSg1:SINE:Alu;RightRepeat=;LeftGenes=NM_014141:+;RightGenes=NM_014141:+;XRef=rs67994340 (chr7:147703796-147707256);Frequency=1.00
chr7	CG	SV	147703799	147704199	38	+	.	ID=2502;Type=deletion;Left=chr7:147703799-147704199;Right=chr7:147707259-147707622
chr7	CG	SV	147707259	147707622	38	+	.	ID=2502;Type=deletion;Left=chr7:147703799-147704199;Right=chr7:147707259-147707622
chr7	CG	SV	150349957	150350531	16	.	.	ID=2500;Type=deletion;Left=chr7:150349957-150350374+;Right=chr7:150350444-150350531+;Distance=487;DiscordantMatePairAlignments=16;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_173681:-;RightGenes=NM_173681:-;XRef=;Frequency=0.18
chr7	CG	SV	150349957	150350374	16	+	.	ID=2500;Type=deletion;Left=chr7:150349957-150350374;Right=chr7:150350444-150350531
chr7	CG	SV	150350444	150350531	16	+	.	ID=2500;Type=deletion;Left=chr7:150349957-150350374;Right=chr7:150350444-150350531
chr7	CG	SV	151795880	151796683	17	.	.	ID=2496;Type=deletion;Left=chr7:151795880-151796258+;Right=chr7:151796549-151796683+;Distance=669;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	151795880	151796258	17	+	.	ID=2496;Type=deletion;Left=chr7:151795880-151796258;Right=chr7:151796549-151796683
chr7	CG	SV	151796549	151796683	17	+	.	ID=2496;Type=deletion;Left=chr7:151795880-151796258;Right=chr7:151796549-151796683
chr7	CG	SV	151876302	151877590	22	.	.	ID=2494;Type=deletion;Left=chr7:151876302-151876765+;Right=chr7:151877267-151877590+;Distance=965;DiscordantMatePairAlignments=22;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=FLAM_C:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs68013241 (chr7:151876302-151877263);Frequency=0.71
chr7	CG	SV	151876302	151876765	22	+	.	ID=2494;Type=deletion;Left=chr7:151876302-151876765;Right=chr7:151877267-151877590
chr7	CG	SV	151877267	151877590	22	+	.	ID=2494;Type=deletion;Left=chr7:151876302-151876765;Right=chr7:151877267-151877590
chr7	CG	SV	151912656	151915679	20	.	.	ID=2493;Type=deletion;Left=chr7:151912656-151913000+;Right=chr7:151915268-151915679+;Distance=2612;DiscordantMatePairAlignments=20;LeftRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;RightRepeat=L1MC3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr7	CG	SV	151912656	151913000	20	+	.	ID=2493;Type=deletion;Left=chr7:151912656-151913000;Right=chr7:151915268-151915679
chr7	CG	SV	151915268	151915679	20	+	.	ID=2493;Type=deletion;Left=chr7:151912656-151913000;Right=chr7:151915268-151915679
chr7	CG	SV	152941071	152942156	40	.	.	ID=2491;Type=deletion;Left=chr7:152941071-152941401+;Right=chr7:152941761-152942156+;Distance=690;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;RightRepeat=L1MC4:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71016803 (chr7:152941071-152941761);Frequency=1.00
chr7	CG	SV	152941071	152941401	40	+	.	ID=2491;Type=deletion;Left=chr7:152941071-152941401;Right=chr7:152941761-152942156
chr7	CG	SV	152941761	152942156	40	+	.	ID=2491;Type=deletion;Left=chr7:152941071-152941401;Right=chr7:152941761-152942156
chr7	CG	SV	153784754	153786290	30	.	.	ID=2490;Type=deletion;Left=chr7:153784754-153785064+;Right=chr7:153786013-153786290+;Distance=1259;DiscordantMatePairAlignments=30;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=NM_001039350:+;NM_001936:+;NM_130797:+;RightGenes=NM_001039350:+;NM_001936:+;NM_130797:+;XRef=rs67517515 (chr7:153784744-153786003);Frequency=0.94
chr7	CG	SV	153784754	153785064	30	+	.	ID=2490;Type=deletion;Left=chr7:153784754-153785064;Right=chr7:153786013-153786290
chr7	CG	SV	153786013	153786290	30	+	.	ID=2490;Type=deletion;Left=chr7:153784754-153785064;Right=chr7:153786013-153786290
chr7	CG	SV	154023035	154030971	29	.	.	ID=2489;Type=deletion;Left=chr7:154023035-154023469+;Right=chr7:154030884-154030971+;Distance=7849;DiscordantMatePairAlignments=29;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_001039350:+;NM_001936:+;NM_130797:+;RightGenes=NM_001039350:+;NM_001936:+;NM_130797:+;XRef=rs71016805 (chr7:154022834-154030686);Frequency=0.53
chr7	CG	SV	154023035	154023469	29	+	.	ID=2489;Type=deletion;Left=chr7:154023035-154023469;Right=chr7:154030884-154030971
chr7	CG	SV	154030884	154030971	29	+	.	ID=2489;Type=deletion;Left=chr7:154023035-154023469;Right=chr7:154030884-154030971
chr7	CG	SV	154507051	154511559	79	.	.	ID=933;Type=distal-duplication;Left=chr7:154507051-154507485-;Right=chr7:154511041-154511559-;Distance=4074;DiscordantMatePairAlignments=79;LeftRepeat=;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=NM_024012:+;RightGenes=;XRef=;Frequency=0.35
chr7	CG	SV	154507051	154507485	79	-	.	ID=933;Type=distal-duplication;Left=chr7:154507051-154507485;Right=chr7:154511041-154511559
chr7	CG	SV	154511041	154511559	79	-	.	ID=933;Type=distal-duplication;Left=chr7:154507051-154507485;Right=chr7:154511041-154511559
chr7	CG	SV	154507932	154511914	57	.	.	ID=2486;Type=distal-duplication;Left=chr7:154507932-154508365+;Right=chr7:154511564-154511914+;Distance=3632;DiscordantMatePairAlignments=57;LeftRepeat=;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=NM_024012:+;RightGenes=;XRef=;Frequency=0.29
chr7	CG	SV	154507932	154508365	57	+	.	ID=2486;Type=distal-duplication;Left=chr7:154507932-154508365;Right=chr7:154511564-154511914
chr7	CG	SV	154511564	154511914	57	+	.	ID=2486;Type=distal-duplication;Left=chr7:154507932-154508365;Right=chr7:154511564-154511914
chr7	CG	SV	154563116	154563786	14	.	.	ID=2485;Type=deletion;Left=chr7:154563116-154563581+;Right=chr7:154563452-154563786+;Distance=336;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 16;RightRepeat=Self chain;Tandem period 16;LeftGenes=;RightGenes=;XRef=rs3062313 (chr7:154563060-154563413);Frequency=0.65
chr7	CG	SV	154563116	154563581	14	+	.	ID=2485;Type=deletion;Left=chr7:154563116-154563581;Right=chr7:154563452-154563786
chr7	CG	SV	154563452	154563786	14	+	.	ID=2485;Type=deletion;Left=chr7:154563116-154563581;Right=chr7:154563452-154563786
chr7	CG	SV	154572865	154573583	12	.	.	ID=2484;Type=deletion;Left=chr7:154572865-154573332+;Right=chr7:154573194-154573583+;Distance=329;DiscordantMatePairAlignments=12;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67616333 (chr7:154572848-154573177);Frequency=0.94
chr7	CG	SV	154572865	154573332	12	+	.	ID=2484;Type=deletion;Left=chr7:154572865-154573332;Right=chr7:154573194-154573583
chr7	CG	SV	154573194	154573583	12	+	.	ID=2484;Type=deletion;Left=chr7:154572865-154573332;Right=chr7:154573194-154573583
chr7	CG	SV	157722243	157723682	296	.	.	ID=2469;Type=deletion;Left=chr7:157722243-157722756+;Right=chr7:157723217-157723682+;Distance=974;DiscordantMatePairAlignments=296;LeftRepeat=LTR5_Hs:LTR:ERVK;Self chain;RightRepeat=Self chain;LeftGenes=NM_002847:-;NM_130842:-;NM_130843:-;RightGenes=NM_002847:-;NM_130842:-;NM_130843:-;XRef=rs67417246 (chr7:157722243-157723217);Frequency=0.94
chr7	CG	SV	157722243	157722756	296	+	.	ID=2469;Type=deletion;Left=chr7:157722243-157722756;Right=chr7:157723217-157723682
chr7	CG	SV	157723217	157723682	296	+	.	ID=2469;Type=deletion;Left=chr7:157722243-157722756;Right=chr7:157723217-157723682
chr7	CG	SV	157739403	157740532	110	.	.	ID=2468;Type=deletion;Left=chr7:157739403-157739850+;Right=chr7:157740146-157740532+;Distance=743;DiscordantMatePairAlignments=110;LeftRepeat=Self chain;Tandem period 74;RightRepeat=Self chain;Tandem period 74;LeftGenes=NM_002847:-;NM_130842:-;NM_130843:-;RightGenes=NM_002847:-;NM_130842:-;NM_130843:-;XRef=rs67809280 (chr7:157739419-157740162);Frequency=0.76
chr7	CG	SV	157739403	157739850	110	+	.	ID=2468;Type=deletion;Left=chr7:157739403-157739850;Right=chr7:157740146-157740532
chr7	CG	SV	157740146	157740532	110	+	.	ID=2468;Type=deletion;Left=chr7:157739403-157739850;Right=chr7:157740146-157740532
chr7	CG	SV	157938649	157939299	13	.	.	ID=2467;Type=deletion;Left=chr7:157938649-157939147+;Right=chr7:157938953-157939299+;Distance=304;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 76;RightRepeat=Self chain;LeftGenes=NM_002847:-;NM_130842:-;NM_130843:-;RightGenes=NM_002847:-;NM_130842:-;NM_130843:-;XRef=rs71016826 (chr7:157938573-157938877);Frequency=0.88
chr7	CG	SV	157938649	157939147	13	+	.	ID=2467;Type=deletion;Left=chr7:157938649-157939147;Right=chr7:157938953-157939299
chr7	CG	SV	157938953	157939299	13	+	.	ID=2467;Type=deletion;Left=chr7:157938649-157939147;Right=chr7:157938953-157939299
chr7	CG	SV	158080592	158080740	142	.	.	ID=930;Type=tandem-duplication;Left=chr7:158080592-158080686-;Right=chr7:158080653-158080740-;Distance=54;DiscordantMatePairAlignments=142;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGG;Tandem period 9;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	158080592	158080686	142	-	.	ID=930;Type=tandem-duplication;Left=chr7:158080592-158080686;Right=chr7:158080653-158080740
chr7	CG	SV	158080653	158080740	142	-	.	ID=930;Type=tandem-duplication;Left=chr7:158080592-158080686;Right=chr7:158080653-158080740
chr7	CG	SV	158802673	158817824	31	.	.	ID=2465;Type=deletion;Left=chr7:158802673-158803045+;Right=chr7:158817343-158817824+;Distance=14670;DiscordantMatePairAlignments=31;LeftRepeat=MER57A:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr7	CG	SV	158802673	158803045	31	+	.	ID=2465;Type=deletion;Left=chr7:158802673-158803045;Right=chr7:158817343-158817824
chr7	CG	SV	158817343	158817824	31	+	.	ID=2465;Type=deletion;Left=chr7:158802673-158803045;Right=chr7:158817343-158817824
chr8	CG	SV	584397	589928	163	.	.	ID=2464;Type=deletion;Left=chr8:584397-584948+;Right=chr8:589414-589928+;Distance=5017;DiscordantMatePairAlignments=163;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66630184 (chr8:584400-589414);Frequency=0.88
chr8	CG	SV	584397	584948	163	+	.	ID=2464;Type=deletion;Left=chr8:584397-584948;Right=chr8:589414-589928
chr8	CG	SV	589414	589928	163	+	.	ID=2464;Type=deletion;Left=chr8:584397-584948;Right=chr8:589414-589928
chr8	CG	SV	951194	955210	12	.	.	ID=2463;Type=deletion;Left=chr8:951194-951532+;Right=chr8:955049-955210+;Distance=3855;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;Tandem period 33;Tandem period 64;Tandem period 97;RightRepeat=Self chain;Tandem period 33;Tandem period 64;Tandem period 97;LeftGenes=;RightGenes=;XRef=rs71855433 (chr8:950994-954851);Frequency=0.35
chr8	CG	SV	951194	951532	12	+	.	ID=2463;Type=deletion;Left=chr8:951194-951532;Right=chr8:955049-955210
chr8	CG	SV	955049	955210	12	+	.	ID=2463;Type=deletion;Left=chr8:951194-951532;Right=chr8:955049-955210
chr8	CG	SV	1101317	1101751	30	.	.	ID=928;Type=tandem-duplication;Left=chr8:1101317-1101523-;Right=chr8:1101613-1101751-;Distance=228;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;Tandem period 45;RightRepeat=Self chain;Tandem period 45;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr8	CG	SV	1101317	1101523	30	-	.	ID=928;Type=tandem-duplication;Left=chr8:1101317-1101523;Right=chr8:1101613-1101751
chr8	CG	SV	1101613	1101751	30	-	.	ID=928;Type=tandem-duplication;Left=chr8:1101317-1101523;Right=chr8:1101613-1101751
chr8	CG	SV	1733872	1734722	182	.	.	ID=2460;Type=deletion;Left=chr8:1733872-1734321+;Right=chr8:1734353-1734722+;Distance=481;DiscordantMatePairAlignments=182;LeftRepeat=Self chain;Tandem period 37;RightRepeat=Self chain;Tandem period 37;LeftGenes=;RightGenes=;XRef=rs71843993 (chr8:1733872-1734353);Frequency=0.88
chr8	CG	SV	1733872	1734321	182	+	.	ID=2460;Type=deletion;Left=chr8:1733872-1734321;Right=chr8:1734353-1734722
chr8	CG	SV	1734353	1734722	182	+	.	ID=2460;Type=deletion;Left=chr8:1733872-1734321;Right=chr8:1734353-1734722
chr8	CG	SV	1779795	1780038	24	.	.	ID=927;Type=tandem-duplication;Left=chr8:1779795-1779913-;Right=chr8:1779927-1780038-;Distance=125;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;Tandem period 43;RightRepeat=Self chain;LeftGenes=NM_014629:+;RightGenes=NM_014629:+;XRef=;Frequency=0.94
chr8	CG	SV	1779795	1779913	24	-	.	ID=927;Type=tandem-duplication;Left=chr8:1779795-1779913;Right=chr8:1779927-1780038
chr8	CG	SV	1779927	1780038	24	-	.	ID=927;Type=tandem-duplication;Left=chr8:1779795-1779913;Right=chr8:1779927-1780038
chr8	CG	SV	2166339	2167085	14	.	.	ID=2459;Type=deletion;Left=chr8:2166339-2166753+;Right=chr8:2166662-2167085+;Distance=323;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71981345 (chr8:2166329-2166652);Frequency=0.12
chr8	CG	SV	2166339	2166753	14	+	.	ID=2459;Type=deletion;Left=chr8:2166339-2166753;Right=chr8:2166662-2167085
chr8	CG	SV	2166662	2167085	14	+	.	ID=2459;Type=deletion;Left=chr8:2166339-2166753;Right=chr8:2166662-2167085
chr8	CG	SV	2202955	2203870	36	.	.	ID=2458;Type=deletion;Left=chr8:2202955-2203480+;Right=chr8:2203564-2203870+;Distance=609;DiscordantMatePairAlignments=36;LeftRepeat=Self chain;Tandem period 87;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	2202955	2203480	36	+	.	ID=2458;Type=deletion;Left=chr8:2202955-2203480;Right=chr8:2203564-2203870
chr8	CG	SV	2203564	2203870	36	+	.	ID=2458;Type=deletion;Left=chr8:2202955-2203480;Right=chr8:2203564-2203870
chr8	CG	SV	8423460	8424657	12	.	.	ID=2453;Type=deletion;Left=chr8:8423460-8423968+;Right=chr8:8424374-8424657+;Distance=914;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=FRAM:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72459952 (chr8:8423440-8424354);Frequency=0.82
chr8	CG	SV	8423460	8423968	12	+	.	ID=2453;Type=deletion;Left=chr8:8423460-8423968;Right=chr8:8424374-8424657
chr8	CG	SV	8424374	8424657	12	+	.	ID=2453;Type=deletion;Left=chr8:8423460-8423968;Right=chr8:8424374-8424657
chr8	CG	SV	8764151	8766601	69	.	.	ID=2452;Type=deletion;Left=chr8:8764151-8764590+;Right=chr8:8766092-8766601+;Distance=1941;DiscordantMatePairAlignments=69;LeftRepeat=Self chain;RightRepeat=MIRb:SINE:MIR;Self chain;LeftGenes=NM_004225:-;RightGenes=NM_004225:-;XRef=;Frequency=0.00
chr8	CG	SV	8764151	8764590	69	+	.	ID=2452;Type=deletion;Left=chr8:8764151-8764590;Right=chr8:8766092-8766601
chr8	CG	SV	8766092	8766601	69	+	.	ID=2452;Type=deletion;Left=chr8:8764151-8764590;Right=chr8:8766092-8766601
chr8	CG	SV	11282971	11285031	40	.	.	ID=2451;Type=deletion;Left=chr8:11282971-11283327+;Right=chr8:11284620-11285031+;Distance=1649;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_026814:+;RightGenes=NR_026814:+;XRef=;Frequency=0.82
chr8	CG	SV	11282971	11283327	40	+	.	ID=2451;Type=deletion;Left=chr8:11282971-11283327;Right=chr8:11284620-11285031
chr8	CG	SV	11284620	11285031	40	+	.	ID=2451;Type=deletion;Left=chr8:11282971-11283327;Right=chr8:11284620-11285031
chr8	CG	SV	16866251	16866927	29	.	.	ID=2447;Type=complex;Left=chr8:16866251-16866720+;Right=chr8:16866621-16866927+;Distance=370;DiscordantMatePairAlignments=29;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=ERVL-B4:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs10526511 (chr8:16866250-16866620);Frequency=0.59
chr8	CG	SV	16866251	16866720	29	+	.	ID=2447;Type=complex;Left=chr8:16866251-16866720;Right=chr8:16866621-16866927
chr8	CG	SV	16866621	16866927	29	+	.	ID=2447;Type=complex;Left=chr8:16866251-16866720;Right=chr8:16866621-16866927
chr8	CG	SV	16866251	16867040	18	.	.	ID=2448;Type=complex;Left=chr8:16866251-16866599+;Right=chr8:16866621-16867040+;Distance=370;DiscordantMatePairAlignments=18;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=ERVL-B4:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs10526511 (chr8:16866250-16866620);Frequency=0.59
chr8	CG	SV	16866251	16866599	18	+	.	ID=2448;Type=complex;Left=chr8:16866251-16866599;Right=chr8:16866621-16867040
chr8	CG	SV	16866621	16867040	18	+	.	ID=2448;Type=complex;Left=chr8:16866251-16866599;Right=chr8:16866621-16867040
chr8	CG	SV	18498900	18500608	66	.	.	ID=2445;Type=deletion;Left=chr8:18498900-18499376+;Right=chr8:18500233-18500608+;Distance=1333;DiscordantMatePairAlignments=66;LeftRepeat=L1HS:LINE:L1;L1M3:LINE:L1;RightRepeat=L1M3:LINE:L1;LeftGenes=NM_015310:-;NM_206909:-;RightGenes=NM_015310:-;NM_206909:-;XRef=rs71189488 (chr8:18498900-18500233);Frequency=1.00
chr8	CG	SV	18498900	18499376	66	+	.	ID=2445;Type=deletion;Left=chr8:18498900-18499376;Right=chr8:18500233-18500608
chr8	CG	SV	18500233	18500608	66	+	.	ID=2445;Type=deletion;Left=chr8:18498900-18499376;Right=chr8:18500233-18500608
chr8	CG	SV	18695738	18697214	112	.	.	ID=2444;Type=deletion;Left=chr8:18695738-18696139+;Right=chr8:18696712-18697214+;Distance=974;DiscordantMatePairAlignments=112;LeftRepeat=LTR5_Hs:LTR:ERVK;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=NM_015310:-;NM_206909:-;RightGenes=NM_015310:-;NM_206909:-;XRef=rs67390803 (chr8:18695731-18696705);Frequency=1.00
chr8	CG	SV	18695738	18696139	112	+	.	ID=2444;Type=deletion;Left=chr8:18695738-18696139;Right=chr8:18696712-18697214
chr8	CG	SV	18696712	18697214	112	+	.	ID=2444;Type=deletion;Left=chr8:18695738-18696139;Right=chr8:18696712-18697214
chr8	CG	SV	20987684	20988276	60	.	.	ID=2442;Type=deletion;Left=chr8:20987684-20988148+;Right=chr8:20988087-20988276+;Distance=403;DiscordantMatePairAlignments=60;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr8	CG	SV	20987684	20988148	60	+	.	ID=2442;Type=deletion;Left=chr8:20987684-20988148;Right=chr8:20988087-20988276
chr8	CG	SV	20988087	20988276	60	+	.	ID=2442;Type=deletion;Left=chr8:20987684-20988148;Right=chr8:20988087-20988276
chr8	CG	SV	25122602	25126976	124	.	.	ID=2441;Type=deletion;Left=chr8:25122602-25123018+;Right=chr8:25126576-25126976+;Distance=3974;DiscordantMatePairAlignments=124;LeftRepeat=;RightRepeat=;LeftGenes=NM_024940:+;RightGenes=NM_024940:+;XRef=rs71640594 (chr8:25122595-25126569);Frequency=1.00
chr8	CG	SV	25122602	25123018	124	+	.	ID=2441;Type=deletion;Left=chr8:25122602-25123018;Right=chr8:25126576-25126976
chr8	CG	SV	25126576	25126976	124	+	.	ID=2441;Type=deletion;Left=chr8:25122602-25123018;Right=chr8:25126576-25126976
chr8	CG	SV	30511833	30512521	18	.	.	ID=2440;Type=deletion;Left=chr8:30511833-30512344+;Right=chr8:30512137-30512521+;Distance=304;DiscordantMatePairAlignments=18;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001008710:+;NM_001008711:+;NM_001008712:+;NM_006867:+;RightGenes=NM_001008710:+;NM_001008711:+;NM_001008712:+;NM_006867:+;XRef=rs10705400 (chr8:30511819-30512123);Frequency=1.00
chr8	CG	SV	30511833	30512344	18	+	.	ID=2440;Type=deletion;Left=chr8:30511833-30512344;Right=chr8:30512137-30512521
chr8	CG	SV	30512137	30512521	18	+	.	ID=2440;Type=deletion;Left=chr8:30511833-30512344;Right=chr8:30512137-30512521
chr8	CG	SV	31690797	31691541	13	.	.	ID=2439;Type=deletion;Left=chr8:31690797-31691106+;Right=chr8:31691150-31691541+;Distance=353;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_013962:+;RightGenes=NM_013962:+;XRef=rs66662440 (chr8:31690797-31691150);Frequency=1.00
chr8	CG	SV	31690797	31691106	13	+	.	ID=2439;Type=deletion;Left=chr8:31690797-31691106;Right=chr8:31691150-31691541
chr8	CG	SV	31691150	31691541	13	+	.	ID=2439;Type=deletion;Left=chr8:31690797-31691106;Right=chr8:31691150-31691541
chr8	CG	SV	32799551	32811283	83	.	.	ID=2438;Type=deletion;Left=chr8:32799551-32799970+;Right=chr8:32810807-32811283+;Distance=11256;DiscordantMatePairAlignments=83;LeftRepeat=MLT1I:LTR:MaLR;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	32799551	32799970	83	+	.	ID=2438;Type=deletion;Left=chr8:32799551-32799970;Right=chr8:32810807-32811283
chr8	CG	SV	32810807	32811283	83	+	.	ID=2438;Type=deletion;Left=chr8:32799551-32799970;Right=chr8:32810807-32811283
chr8	CG	SV	37170041	37171467	122	.	.	ID=2437;Type=deletion;Left=chr8:37170041-37170437+;Right=chr8:37171015-37171467+;Distance=974;DiscordantMatePairAlignments=122;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67176554 (chr8:37170037-37171011);Frequency=1.00
chr8	CG	SV	37170041	37170437	122	+	.	ID=2437;Type=deletion;Left=chr8:37170041-37170437;Right=chr8:37171015-37171467
chr8	CG	SV	37171015	37171467	122	+	.	ID=2437;Type=deletion;Left=chr8:37170041-37170437;Right=chr8:37171015-37171467
chr8	CG	SV	42309684	42313822	12	.	.	ID=2434;Type=deletion;Left=chr8:42309684-42310074+;Right=chr8:42313647-42313822+;Distance=3963;DiscordantMatePairAlignments=12;LeftRepeat=AluSp:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67189271 (chr8:42309546-42313509);Frequency=1.00
chr8	CG	SV	42309684	42310074	12	+	.	ID=2434;Type=deletion;Left=chr8:42309684-42310074;Right=chr8:42313647-42313822
chr8	CG	SV	42313647	42313822	12	+	.	ID=2434;Type=deletion;Left=chr8:42309684-42310074;Right=chr8:42313647-42313822
chr8	CG	SV	52771666	52771983	20	.	.	ID=922;Type=tandem-duplication;Left=chr8:52771666-52771758-;Right=chr8:52771745-52771983-;Distance=225;DiscordantMatePairAlignments=20;LeftRepeat=Tandem period 12;Tandem period 22;RightRepeat=;LeftGenes=NM_144651:-;RightGenes=NM_144651:-;XRef=;Frequency=0.88
chr8	CG	SV	52771666	52771758	20	-	.	ID=922;Type=tandem-duplication;Left=chr8:52771666-52771758;Right=chr8:52771745-52771983
chr8	CG	SV	52771745	52771983	20	-	.	ID=922;Type=tandem-duplication;Left=chr8:52771666-52771758;Right=chr8:52771745-52771983
chr8	CG	SV	55134416	55135210	18	.	.	ID=2429;Type=deletion;Left=chr8:55134416-55134724+;Right=chr8:55134730-55135210+;Distance=314;DiscordantMatePairAlignments=18;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_006330:-;RightGenes=NM_006330:-;XRef=rs71976000 (chr8:55134416-55134730);Frequency=0.35
chr8	CG	SV	55134416	55134724	18	+	.	ID=2429;Type=deletion;Left=chr8:55134416-55134724;Right=chr8:55134730-55135210
chr8	CG	SV	55134730	55135210	18	+	.	ID=2429;Type=deletion;Left=chr8:55134416-55134724;Right=chr8:55134730-55135210
chr8	CG	SV	58278455	58285598	76	.	.	ID=921;Type=complex;Left=chr8:58278455-58278874-;Right=chr8:58285051-58285598-;Distance=6724;DiscordantMatePairAlignments=76;LeftRepeat=MER50:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58278455	58278874	76	-	.	ID=921;Type=complex;Left=chr8:58278455-58278874;Right=chr8:58285051-58285598
chr8	CG	SV	58285051	58285598	76	-	.	ID=921;Type=complex;Left=chr8:58278455-58278874;Right=chr8:58285051-58285598
chr8	CG	SV	58279452	58281247	58	.	.	ID=2427;Type=complex;Left=chr8:58279452-58279923+;Right=chr8:58280826-58281247+;Distance=1374;DiscordantMatePairAlignments=58;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58279452	58279923	58	+	.	ID=2427;Type=complex;Left=chr8:58279452-58279923;Right=chr8:58280826-58281247
chr8	CG	SV	58280826	58281247	58	+	.	ID=2427;Type=complex;Left=chr8:58279452-58279923;Right=chr8:58280826-58281247
chr8	CG	SV	58280389	58290572	71	.	.	ID=919;Type=complex;Left=chr8:58280389-58280822-;Right=chr8:58290080-58290572-;Distance=9750;DiscordantMatePairAlignments=71;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58280389	58280822	71	-	.	ID=919;Type=complex;Left=chr8:58280389-58280822;Right=chr8:58290080-58290572
chr8	CG	SV	58290080	58290572	71	-	.	ID=919;Type=complex;Left=chr8:58280389-58280822;Right=chr8:58290080-58290572
chr8	CG	SV	58285605	58290481	306	.	.	ID=2426;Type=complex;Left=chr8:58285605-58286037+;Right=chr8:58289986-58290481+;Distance=4381;DiscordantMatePairAlignments=306;LeftRepeat=Self chain;RightRepeat=MER50:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58285605	58286037	306	+	.	ID=2426;Type=complex;Left=chr8:58285605-58286037;Right=chr8:58289986-58290481
chr8	CG	SV	58289986	58290481	306	+	.	ID=2426;Type=complex;Left=chr8:58285605-58286037;Right=chr8:58289986-58290481
chr8	CG	SV	58334603	58335451	29	.	.	ID=918;Type=tandem-duplication;Left=chr8:58334603-58334981-;Right=chr8:58335113-58335451-;Distance=470;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr8	CG	SV	58334603	58334981	29	-	.	ID=918;Type=tandem-duplication;Left=chr8:58334603-58334981;Right=chr8:58335113-58335451
chr8	CG	SV	58335113	58335451	29	-	.	ID=918;Type=tandem-duplication;Left=chr8:58334603-58334981;Right=chr8:58335113-58335451
chr8	CG	SV	59241018	59241765	29	.	.	ID=2425;Type=deletion;Left=chr8:59241018-59241487+;Right=chr8:59241354-59241765+;Distance=336;DiscordantMatePairAlignments=29;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67243806 (chr8:59241018-59241354);Frequency=1.00
chr8	CG	SV	59241018	59241487	29	+	.	ID=2425;Type=deletion;Left=chr8:59241018-59241487;Right=chr8:59241354-59241765
chr8	CG	SV	59241354	59241765	29	+	.	ID=2425;Type=deletion;Left=chr8:59241018-59241487;Right=chr8:59241354-59241765
chr8	CG	SV	61367551	61368285	24	.	.	ID=2424;Type=deletion;Left=chr8:61367551-61367975+;Right=chr8:61367868-61368285+;Distance=317;DiscordantMatePairAlignments=24;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs33938822 (chr8:61367551-61367868);Frequency=0.76
chr8	CG	SV	61367551	61367975	24	+	.	ID=2424;Type=deletion;Left=chr8:61367551-61367975;Right=chr8:61367868-61368285
chr8	CG	SV	61367868	61368285	24	+	.	ID=2424;Type=deletion;Left=chr8:61367551-61367975;Right=chr8:61367868-61368285
chr8	CG	SV	62197914	62198828	71	.	.	ID=2423;Type=deletion;Left=chr8:62197914-62198347+;Right=chr8:62198446-62198828+;Distance=532;DiscordantMatePairAlignments=71;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr8	CG	SV	62197914	62198347	71	+	.	ID=2423;Type=deletion;Left=chr8:62197914-62198347;Right=chr8:62198446-62198828
chr8	CG	SV	62198446	62198828	71	+	.	ID=2423;Type=deletion;Left=chr8:62197914-62198347;Right=chr8:62198446-62198828
chr8	CG	SV	72713972	72714749	11	.	.	ID=2419;Type=deletion;Left=chr8:72713972-72714426+;Right=chr8:72714306-72714749+;Distance=334;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67424486 (chr8:72713972-72714306);Frequency=0.94
chr8	CG	SV	72713972	72714426	11	+	.	ID=2419;Type=deletion;Left=chr8:72713972-72714426;Right=chr8:72714306-72714749
chr8	CG	SV	72714306	72714749	11	+	.	ID=2419;Type=deletion;Left=chr8:72713972-72714426;Right=chr8:72714306-72714749
chr8	CG	SV	73950326	73956826	85	.	.	ID=2418;Type=deletion;Left=chr8:73950326-73950722+;Right=chr8:73956384-73956826+;Distance=6058;DiscordantMatePairAlignments=85;LeftRepeat=;RightRepeat=;LeftGenes=NM_004770:+;RightGenes=NM_004770:+;XRef=rs71640573 (chr8:73950319-73956377);Frequency=1.00
chr8	CG	SV	73950326	73950722	85	+	.	ID=2418;Type=deletion;Left=chr8:73950326-73950722;Right=chr8:73956384-73956826
chr8	CG	SV	73956384	73956826	85	+	.	ID=2418;Type=deletion;Left=chr8:73950326-73950722;Right=chr8:73956384-73956826
chr8	CG	SV	75525426	75529888	23	.	.	ID=2417;Type=deletion;Left=chr8:75525426-75525822+;Right=chr8:75529517-75529888+;Distance=4091;DiscordantMatePairAlignments=23;LeftRepeat=L1MEb:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr8	CG	SV	75525426	75525822	23	+	.	ID=2417;Type=deletion;Left=chr8:75525426-75525822;Right=chr8:75529517-75529888
chr8	CG	SV	75529517	75529888	23	+	.	ID=2417;Type=deletion;Left=chr8:75525426-75525822;Right=chr8:75529517-75529888
chr8	CG	SV	77499940	77501428	90	.	.	ID=2415;Type=deletion;Left=chr8:77499940-77500376+;Right=chr8:77500985-77501428+;Distance=1045;DiscordantMatePairAlignments=90;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66858940 (chr8:77499940-77500985);Frequency=0.94
chr8	CG	SV	77499940	77500376	90	+	.	ID=2415;Type=deletion;Left=chr8:77499940-77500376;Right=chr8:77500985-77501428
chr8	CG	SV	77500985	77501428	90	+	.	ID=2415;Type=deletion;Left=chr8:77499940-77500376;Right=chr8:77500985-77501428
chr8	CG	SV	82208801	82209584	11	.	.	ID=2414;Type=deletion;Left=chr8:82208801-82209194+;Right=chr8:82209221-82209584+;Distance=420;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 42;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr8	CG	SV	82208801	82209194	11	+	.	ID=2414;Type=deletion;Left=chr8:82208801-82209194;Right=chr8:82209221-82209584
chr8	CG	SV	82209221	82209584	11	+	.	ID=2414;Type=deletion;Left=chr8:82208801-82209194;Right=chr8:82209221-82209584
chr8	CG	SV	90914794	91965148	18	.	.	ID=2409;Type=deletion;Left=chr8:90914794-90915171+;Right=chr8:91965062-91965148+;Distance=1050268;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_022351:+;XRef=;Frequency=0.00
chr8	CG	SV	90914794	90915171	18	+	.	ID=2409;Type=deletion;Left=chr8:90914794-90915171;Right=chr8:91965062-91965148
chr8	CG	SV	91965062	91965148	18	+	.	ID=2409;Type=deletion;Left=chr8:90914794-90915171;Right=chr8:91965062-91965148
chr8	CG	SV	94209883	94212296	65	.	.	ID=2408;Type=complex;Left=chr8:94209883-94210336+;Right=chr8:94211891-94212296+;Distance=2008;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	94209883	94210336	65	+	.	ID=2408;Type=complex;Left=chr8:94209883-94210336;Right=chr8:94211891-94212296
chr8	CG	SV	94211891	94212296	65	+	.	ID=2408;Type=complex;Left=chr8:94209883-94210336;Right=chr8:94211891-94212296
chr8	CG	SV	94211774	94212776	43	.	.	ID=3570;Type=complex;Left=chr8:94211774-94212176+;Right=chr8:94212370-94212776-;Distance=1002;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	94211774	94212176	43	+	.	ID=3570;Type=complex;Left=chr8:94211774-94212176;Right=chr8:94212370-94212776
chr8	CG	SV	94212370	94212776	43	+	.	ID=3570;Type=complex;Left=chr8:94211774-94212176;Right=chr8:94212370-94212776
chr8	CG	SV	97167254	97167918	23	.	.	ID=2406;Type=complex;Left=chr8:97167254-97167729+;Right=chr8:97167606-97167918+;Distance=352;DiscordantMatePairAlignments=23;LeftRepeat=MIRb:SINE:MIR;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs72382436 (chr8:97167249-97167601);Frequency=1.00
chr8	CG	SV	97167254	97167729	23	+	.	ID=2406;Type=complex;Left=chr8:97167254-97167729;Right=chr8:97167606-97167918
chr8	CG	SV	97167606	97167918	23	+	.	ID=2406;Type=complex;Left=chr8:97167254-97167729;Right=chr8:97167606-97167918
chr8	CG	SV	97167264	97168062	22	.	.	ID=2407;Type=complex;Left=chr8:97167264-97167670+;Right=chr8:97167616-97168062+;Distance=352;DiscordantMatePairAlignments=22;LeftRepeat=AluY:SINE:Alu;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs10528502 (chr8:97167264-97167616);Frequency=1.00
chr8	CG	SV	97167264	97167670	22	+	.	ID=2407;Type=complex;Left=chr8:97167264-97167670;Right=chr8:97167616-97168062
chr8	CG	SV	97167616	97168062	22	+	.	ID=2407;Type=complex;Left=chr8:97167264-97167670;Right=chr8:97167616-97168062
chr8	CG	SV	98664585	98665282	24	.	.	ID=2405;Type=deletion;Left=chr8:98664585-98665055+;Right=chr8:98664924-98665282+;Distance=339;DiscordantMatePairAlignments=24;LeftRepeat=Tandem T;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=rs67123614 (chr8:98664568-98664907);Frequency=1.00
chr8	CG	SV	98664585	98665055	24	+	.	ID=2405;Type=deletion;Left=chr8:98664585-98665055;Right=chr8:98664924-98665282
chr8	CG	SV	98664924	98665282	24	+	.	ID=2405;Type=deletion;Left=chr8:98664585-98665055;Right=chr8:98664924-98665282
chr8	CG	SV	108189410	108190121	12	.	.	ID=2399;Type=deletion;Left=chr8:108189410-108189860+;Right=chr8:108189732-108190121+;Distance=322;DiscordantMatePairAlignments=12;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67681243 (chr8:108189391-108189713);Frequency=1.00
chr8	CG	SV	108189410	108189860	12	+	.	ID=2399;Type=deletion;Left=chr8:108189410-108189860;Right=chr8:108189732-108190121
chr8	CG	SV	108189732	108190121	12	+	.	ID=2399;Type=deletion;Left=chr8:108189410-108189860;Right=chr8:108189732-108190121
chr8	CG	SV	112363228	112366696	29	.	.	ID=2397;Type=deletion;Left=chr8:112363228-112363574+;Right=chr8:112366316-112366696+;Distance=3088;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=MLT-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67753424 (chr8:112363228-112366316);Frequency=0.88
chr8	CG	SV	112363228	112363574	29	+	.	ID=2397;Type=deletion;Left=chr8:112363228-112363574;Right=chr8:112366316-112366696
chr8	CG	SV	112366316	112366696	29	+	.	ID=2397;Type=deletion;Left=chr8:112363228-112363574;Right=chr8:112366316-112366696
chr8	CG	SV	113154612	113155512	30	.	.	ID=2395;Type=deletion;Left=chr8:113154612-113154955+;Right=chr8:113154942-113155512+;Distance=330;DiscordantMatePairAlignments=30;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=L1M2:LINE:L1;LeftGenes=;RightGenes=;XRef=rs6150764 (chr8:113154612-113154942);Frequency=1.00
chr8	CG	SV	113154612	113154955	30	+	.	ID=2395;Type=deletion;Left=chr8:113154612-113154955;Right=chr8:113154942-113155512
chr8	CG	SV	113154942	113155512	30	+	.	ID=2395;Type=deletion;Left=chr8:113154612-113154955;Right=chr8:113154942-113155512
chr8	CG	SV	118942920	118945069	26	.	.	ID=2391;Type=deletion;Left=chr8:118942920-118943289+;Right=chr8:118944774-118945069+;Distance=1854;DiscordantMatePairAlignments=26;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_000127:-;RightGenes=NM_000127:-;XRef=;Frequency=0.59
chr8	CG	SV	118942920	118943289	26	+	.	ID=2391;Type=deletion;Left=chr8:118942920-118943289;Right=chr8:118944774-118945069
chr8	CG	SV	118944774	118945069	26	+	.	ID=2391;Type=deletion;Left=chr8:118942920-118943289;Right=chr8:118944774-118945069
chr8	CG	SV	121750866	121751658	15	.	.	ID=2388;Type=deletion;Left=chr8:121750866-121751287+;Right=chr8:121751185-121751658+;Distance=319;DiscordantMatePairAlignments=15;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MER5A1:DNA:MER1_type;LeftGenes=NM_021021:-;RightGenes=NM_021021:-;XRef=rs67216429 (chr8:121750866-121751185);Frequency=0.65
chr8	CG	SV	121750866	121751287	15	+	.	ID=2388;Type=deletion;Left=chr8:121750866-121751287;Right=chr8:121751185-121751658
chr8	CG	SV	121751185	121751658	15	+	.	ID=2388;Type=deletion;Left=chr8:121750866-121751287;Right=chr8:121751185-121751658
chr8	CG	SV	126664305	126670752	149	.	.	ID=2385;Type=deletion;Left=chr8:126664305-126664792+;Right=chr8:126670318-126670752+;Distance=6013;DiscordantMatePairAlignments=149;LeftRepeat=;RightRepeat=MER113:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs67543822 (chr8:126664303-126670316);Frequency=1.00
chr8	CG	SV	126664305	126664792	149	+	.	ID=2385;Type=deletion;Left=chr8:126664305-126664792;Right=chr8:126670318-126670752
chr8	CG	SV	126670318	126670752	149	+	.	ID=2385;Type=deletion;Left=chr8:126664305-126664792;Right=chr8:126670318-126670752
chr8	CG	SV	127261392	127264206	40	.	.	ID=2384;Type=deletion;Left=chr8:127261392-127261946+;Right=chr8:127263756-127264206+;Distance=2364;DiscordantMatePairAlignments=40;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72273669 (chr8:127261387-127263752);Frequency=0.59
chr8	CG	SV	127261392	127261946	40	+	.	ID=2384;Type=deletion;Left=chr8:127261392-127261946;Right=chr8:127263756-127264206
chr8	CG	SV	127263756	127264206	40	+	.	ID=2384;Type=deletion;Left=chr8:127261392-127261946;Right=chr8:127263756-127264206
chr8	CG	SV	129534339	129540798	104	.	.	ID=2383;Type=deletion;Left=chr8:129534339-129534838+;Right=chr8:129540452-129540798+;Distance=6113;DiscordantMatePairAlignments=104;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67264625 (chr8:129534335-129540448);Frequency=1.00
chr8	CG	SV	129534339	129534838	104	+	.	ID=2383;Type=deletion;Left=chr8:129534339-129534838;Right=chr8:129540452-129540798
chr8	CG	SV	129540452	129540798	104	+	.	ID=2383;Type=deletion;Left=chr8:129534339-129534838;Right=chr8:129540452-129540798
chr8	CG	SV	136784723	136787585	85	.	.	ID=914;Type=tandem-duplication;Left=chr8:136784723-136785168-;Right=chr8:136787143-136787585-;Distance=2417;DiscordantMatePairAlignments=85;LeftRepeat=L1MEd:LINE:L1;RightRepeat=MLT2E:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	136784723	136785168	85	-	.	ID=914;Type=tandem-duplication;Left=chr8:136784723-136785168;Right=chr8:136787143-136787585
chr8	CG	SV	136787143	136787585	85	-	.	ID=914;Type=tandem-duplication;Left=chr8:136784723-136785168;Right=chr8:136787143-136787585
chr8	CG	SV	138812149	138813403	86	.	.	ID=2381;Type=deletion;Left=chr8:138812149-138812596+;Right=chr8:138813045-138813403+;Distance=896;DiscordantMatePairAlignments=86;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67866144 (chr8:138812147-138813043);Frequency=1.00
chr8	CG	SV	138812149	138812596	86	+	.	ID=2381;Type=deletion;Left=chr8:138812149-138812596;Right=chr8:138813045-138813403
chr8	CG	SV	138813045	138813403	86	+	.	ID=2381;Type=deletion;Left=chr8:138812149-138812596;Right=chr8:138813045-138813403
chr8	CG	SV	141740558	141751457	30	.	.	ID=913;Type=tandem-duplication;Left=chr8:141740558-141740921-;Right=chr8:141751197-141751457-;Distance=10536;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=;LeftGenes=NM_005607:-;NM_153831:-;RightGenes=NM_005607:-;NM_153831:-;XRef=;Frequency=0.00
chr8	CG	SV	141740558	141740921	30	-	.	ID=913;Type=tandem-duplication;Left=chr8:141740558-141740921;Right=chr8:141751197-141751457
chr8	CG	SV	141751197	141751457	30	-	.	ID=913;Type=tandem-duplication;Left=chr8:141740558-141740921;Right=chr8:141751197-141751457
chr8	CG	SV	143395366	143396953	59	.	.	ID=2380;Type=deletion;Left=chr8:143395366-143395768+;Right=chr8:143396670-143396953+;Distance=1304;DiscordantMatePairAlignments=59;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 36;Tandem period 72;LeftGenes=NM_145003:-;RightGenes=NM_145003:-;XRef=;Frequency=0.00
chr8	CG	SV	143395366	143395768	59	+	.	ID=2380;Type=deletion;Left=chr8:143395366-143395768;Right=chr8:143396670-143396953
chr8	CG	SV	143396670	143396953	59	+	.	ID=2380;Type=deletion;Left=chr8:143395366-143395768;Right=chr8:143396670-143396953
chr8	CG	SV	144127988	144128686	20	.	.	ID=2379;Type=deletion;Left=chr8:144127988-144128347+;Right=chr8:144128542-144128686+;Distance=554;DiscordantMatePairAlignments=20;LeftRepeat=(CAGGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 15;Tandem period 31;Tandem period 46;RightRepeat=Self chain;Tandem period 15;Tandem period 31;Tandem period 46;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr8	CG	SV	144127988	144128347	20	+	.	ID=2379;Type=deletion;Left=chr8:144127988-144128347;Right=chr8:144128542-144128686
chr8	CG	SV	144128542	144128686	20	+	.	ID=2379;Type=deletion;Left=chr8:144127988-144128347;Right=chr8:144128542-144128686
chr8	CG	SV	146027877	146029006	16	.	.	ID=2377;Type=deletion;Left=chr8:146027877-146028263+;Right=chr8:146028688-146029006+;Distance=811;DiscordantMatePairAlignments=16;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_003416:+;RightGenes=NM_003416:+;XRef=rs71976446 (chr8:146027825-146028636);Frequency=0.82
chr8	CG	SV	146027877	146028263	16	+	.	ID=2377;Type=deletion;Left=chr8:146027877-146028263;Right=chr8:146028688-146029006
chr8	CG	SV	146028688	146029006	16	+	.	ID=2377;Type=deletion;Left=chr8:146027877-146028263;Right=chr8:146028688-146029006
chr9	CG	SV	697542	698432	19	.	.	ID=2376;Type=deletion;Left=chr9:697542-697786+;Right=chr9:698283-698432+;Distance=741;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;Tandem period 57;RightRepeat=Self chain;Tandem period 57;LeftGenes=NM_015158:+;NM_153186:+;RightGenes=NM_015158:+;NM_153186:+;XRef=;Frequency=0.29
chr9	CG	SV	697542	697786	19	+	.	ID=2376;Type=deletion;Left=chr9:697542-697786;Right=chr9:698283-698432
chr9	CG	SV	698283	698432	19	+	.	ID=2376;Type=deletion;Left=chr9:697542-697786;Right=chr9:698283-698432
chr9	CG	SV	10394564	10395465	59	.	.	ID=2370;Type=deletion;Left=chr9:10394564-10394969+;Right=chr9:10395094-10395465+;Distance=530;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=;LeftGenes=NM_001040712:-;NM_002839:-;NM_130391:-;NM_130392:-;NM_130393:-;RightGenes=NM_001040712:-;NM_002839:-;NM_130391:-;NM_130392:-;NM_130393:-;XRef=rs71315285 (chr9:10394564-10395094);Frequency=1.00
chr9	CG	SV	10394564	10394969	59	+	.	ID=2370;Type=deletion;Left=chr9:10394564-10394969;Right=chr9:10395094-10395465
chr9	CG	SV	10395094	10395465	59	+	.	ID=2370;Type=deletion;Left=chr9:10394564-10394969;Right=chr9:10395094-10395465
chr9	CG	SV	16379407	16380094	11	.	.	ID=2367;Type=deletion;Left=chr9:16379407-16379815+;Right=chr9:16379743-16380094+;Distance=336;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs34716958 (chr9:16379394-16379730);Frequency=1.00
chr9	CG	SV	16379407	16379815	11	+	.	ID=2367;Type=deletion;Left=chr9:16379407-16379815;Right=chr9:16379743-16380094
chr9	CG	SV	16379743	16380094	11	+	.	ID=2367;Type=deletion;Left=chr9:16379407-16379815;Right=chr9:16379743-16380094
chr9	CG	SV	22989503	22990247	16	.	.	ID=2365;Type=deletion;Left=chr9:22989503-22989933+;Right=chr9:22989835-22990247+;Distance=332;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67654271 (chr9:22989487-22989819);Frequency=1.00
chr9	CG	SV	22989503	22989933	16	+	.	ID=2365;Type=deletion;Left=chr9:22989503-22989933;Right=chr9:22989835-22990247
chr9	CG	SV	22989835	22990247	16	+	.	ID=2365;Type=deletion;Left=chr9:22989503-22989933;Right=chr9:22989835-22990247
chr9	CG	SV	23352801	23368124	117	.	.	ID=2363;Type=deletion;Left=chr9:23352801-23353192+;Right=chr9:23367685-23368124+;Distance=14884;DiscordantMatePairAlignments=117;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr9	CG	SV	23352801	23353192	117	+	.	ID=2363;Type=deletion;Left=chr9:23352801-23353192;Right=chr9:23367685-23368124
chr9	CG	SV	23367685	23368124	117	+	.	ID=2363;Type=deletion;Left=chr9:23352801-23353192;Right=chr9:23367685-23368124
chr9	CG	SV	29082577	29088365	21	.	.	ID=2359;Type=deletion;Left=chr9:29082577-29082982+;Right=chr9:29088017-29088365+;Distance=5440;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr9	CG	SV	29082577	29082982	21	+	.	ID=2359;Type=deletion;Left=chr9:29082577-29082982;Right=chr9:29088017-29088365
chr9	CG	SV	29088017	29088365	21	+	.	ID=2359;Type=deletion;Left=chr9:29082577-29082982;Right=chr9:29088017-29088365
chr9	CG	SV	29614709	29615425	11	.	.	ID=2358;Type=deletion;Left=chr9:29614709-29615158+;Right=chr9:29615030-29615425+;Distance=321;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72531416 (chr9:29614691-29615012);Frequency=1.00
chr9	CG	SV	29614709	29615158	11	+	.	ID=2358;Type=deletion;Left=chr9:29614709-29615158;Right=chr9:29615030-29615425
chr9	CG	SV	29615030	29615425	11	+	.	ID=2358;Type=deletion;Left=chr9:29614709-29615158;Right=chr9:29615030-29615425
chr9	CG	SV	31281356	31283072	59	.	.	ID=2357;Type=deletion;Left=chr9:31281356-31281775+;Right=chr9:31282673-31283072+;Distance=1317;DiscordantMatePairAlignments=59;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1PA16:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71965107 (chr9:31281356-31282673);Frequency=0.71
chr9	CG	SV	31281356	31281775	59	+	.	ID=2357;Type=deletion;Left=chr9:31281356-31281775;Right=chr9:31282673-31283072
chr9	CG	SV	31282673	31283072	59	+	.	ID=2357;Type=deletion;Left=chr9:31281356-31281775;Right=chr9:31282673-31283072
chr9	CG	SV	33203156	33204172	15	.	.	ID=2356;Type=deletion;Left=chr9:33203156-33203565+;Right=chr9:33204015-33204172+;Distance=859;DiscordantMatePairAlignments=15;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66854519 (chr9:33203052-33203911);Frequency=0.94
chr9	CG	SV	33203156	33203565	15	+	.	ID=2356;Type=deletion;Left=chr9:33203156-33203565;Right=chr9:33204015-33204172
chr9	CG	SV	33204015	33204172	15	+	.	ID=2356;Type=deletion;Left=chr9:33203156-33203565;Right=chr9:33204015-33204172
chr9	CG	SV	33413376	33414748	14	.	.	ID=2355;Type=deletion;Left=chr9:33413376-33413835+;Right=chr9:33414669-33414748+;Distance=1293;DiscordantMatePairAlignments=14;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=NR_003667:-;RightGenes=NR_003667:-;XRef=;Frequency=0.47
chr9	CG	SV	33413376	33413835	14	+	.	ID=2355;Type=deletion;Left=chr9:33413376-33413835;Right=chr9:33414669-33414748
chr9	CG	SV	33414669	33414748	14	+	.	ID=2355;Type=deletion;Left=chr9:33413376-33413835;Right=chr9:33414669-33414748
chr9	CG	SV	34670976	34671976	12	.	.	ID=912;Type=tandem-duplication;Left=chr9:34670976-34671480-;Right=chr9:34671805-34671976-;Distance=496;DiscordantMatePairAlignments=12;LeftRepeat=MLT1A:LTR:MaLR;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	34670976	34671480	12	-	.	ID=912;Type=tandem-duplication;Left=chr9:34670976-34671480;Right=chr9:34671805-34671976
chr9	CG	SV	34671805	34671976	12	-	.	ID=912;Type=tandem-duplication;Left=chr9:34670976-34671480;Right=chr9:34671805-34671976
chr9	CG	SV	36352905	36354300	45	.	.	ID=2353;Type=deletion;Left=chr9:36352905-36353336+;Right=chr9:36354103-36354300+;Distance=1198;DiscordantMatePairAlignments=45;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=NM_022781:-;NM_194328:-;NM_194329:-;NM_194330:-;NM_194332:-;RightGenes=NM_022781:-;NM_194328:-;NM_194329:-;NM_194330:-;NM_194332:-;XRef=;Frequency=0.88
chr9	CG	SV	36352905	36353336	45	+	.	ID=2353;Type=deletion;Left=chr9:36352905-36353336;Right=chr9:36354103-36354300
chr9	CG	SV	36354103	36354300	45	+	.	ID=2353;Type=deletion;Left=chr9:36352905-36353336;Right=chr9:36354103-36354300
chr9	CG	SV	36413664	36414399	14	.	.	ID=2352;Type=deletion;Left=chr9:36413664-36414121+;Right=chr9:36413980-36414399+;Distance=316;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66479112 (chr9:36413654-36413970);Frequency=0.88
chr9	CG	SV	36413664	36414121	14	+	.	ID=2352;Type=deletion;Left=chr9:36413664-36414121;Right=chr9:36413980-36414399
chr9	CG	SV	36413980	36414399	14	+	.	ID=2352;Type=deletion;Left=chr9:36413664-36414121;Right=chr9:36413980-36414399
chr9	CG	SV	42405903	44010786	49	.	.	ID=254;Type=complex;Left=chr9:42405903-42405991-;Right=chr9:44010660-44010786+;Distance=1604669;DiscordantMatePairAlignments=49;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=SegDup;Self chain;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	42405903	42405991	49	-	.	ID=254;Type=complex;Left=chr9:42405903-42405991;Right=chr9:44010660-44010786
chr9	CG	SV	44010660	44010786	49	-	.	ID=254;Type=complex;Left=chr9:42405903-42405991;Right=chr9:44010660-44010786
chr9	CG	SV	42406062	44010779	55	.	.	ID=3565;Type=complex;Left=chr9:42406062-42406132+;Right=chr9:44010686-44010779-;Distance=1604717;DiscordantMatePairAlignments=55;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=SegDup;Self chain;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	42406062	42406132	55	+	.	ID=3565;Type=complex;Left=chr9:42406062-42406132;Right=chr9:44010686-44010779
chr9	CG	SV	44010686	44010779	55	+	.	ID=3565;Type=complex;Left=chr9:42406062-42406132;Right=chr9:44010686-44010779
chr9	CG	SV	44010595	44010756	149	.	.	ID=910;Type=complex;Left=chr9:44010595-44010692-;Right=chr9:44010679-44010756-;Distance=64;DiscordantMatePairAlignments=149;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=SegDup;Self chain;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	44010595	44010692	149	-	.	ID=910;Type=complex;Left=chr9:44010595-44010692;Right=chr9:44010679-44010756
chr9	CG	SV	44010679	44010756	149	-	.	ID=910;Type=complex;Left=chr9:44010595-44010692;Right=chr9:44010679-44010756
chr9	CG	SV	67912566	67914144	78	.	.	ID=2350;Type=deletion;Left=chr9:67912566-67913200+;Right=chr9:67913640-67914144+;Distance=1074;DiscordantMatePairAlignments=78;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	67912566	67913200	78	+	.	ID=2350;Type=deletion;Left=chr9:67912566-67913200;Right=chr9:67913640-67914144
chr9	CG	SV	67913640	67914144	78	+	.	ID=2350;Type=deletion;Left=chr9:67912566-67913200;Right=chr9:67913640-67914144
chr9	CG	SV	68286256	68287675	14	.	.	ID=2347;Type=deletion;Left=chr9:68286256-68286698+;Right=chr9:68287403-68287675+;Distance=1147;DiscordantMatePairAlignments=14;LeftRepeat=CER:Satellite:Satellite;SegDup;Self chain;Tandem period 144;Tandem period 48;Tandem period 96;RightRepeat=CER:Satellite:Satellite;SegDup;Self chain;Tandem period 144;Tandem period 48;Tandem period 96;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	68286256	68286698	14	+	.	ID=2347;Type=deletion;Left=chr9:68286256-68286698;Right=chr9:68287403-68287675
chr9	CG	SV	68287403	68287675	14	+	.	ID=2347;Type=deletion;Left=chr9:68286256-68286698;Right=chr9:68287403-68287675
chr9	CG	SV	70927942	70933608	22	.	.	ID=2346;Type=deletion;Left=chr9:70927942-70928308+;Right=chr9:70933176-70933608+;Distance=5234;DiscordantMatePairAlignments=22;LeftRepeat=;RightRepeat=L1MB8:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs67209752 (chr9:70927942-70933176);Frequency=0.88
chr9	CG	SV	70927942	70928308	22	+	.	ID=2346;Type=deletion;Left=chr9:70927942-70928308;Right=chr9:70933176-70933608
chr9	CG	SV	70933176	70933608	22	+	.	ID=2346;Type=deletion;Left=chr9:70927942-70928308;Right=chr9:70933176-70933608
chr9	CG	SV	70994347	70995213	129	.	.	ID=2345;Type=deletion;Left=chr9:70994347-70994784+;Right=chr9:70994821-70995213+;Distance=474;DiscordantMatePairAlignments=129;LeftRepeat=FAM:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_004817:+;NM_201629:+;RightGenes=NM_004817:+;NM_201629:+;XRef=rs71843308 (chr9:70994347-70994821);Frequency=0.65
chr9	CG	SV	70994347	70994784	129	+	.	ID=2345;Type=deletion;Left=chr9:70994347-70994784;Right=chr9:70994821-70995213
chr9	CG	SV	70994821	70995213	129	+	.	ID=2345;Type=deletion;Left=chr9:70994347-70994784;Right=chr9:70994821-70995213
chr9	CG	SV	71085302	71086545	13	.	.	ID=2344;Type=deletion;Left=chr9:71085302-71085821+;Right=chr9:71086462-71086545+;Distance=1160;DiscordantMatePairAlignments=13;LeftRepeat=HAL1:LINE:L1;RightRepeat=HAL1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71953158 (chr9:71085307-71086467);Frequency=0.94
chr9	CG	SV	71085302	71085821	13	+	.	ID=2344;Type=deletion;Left=chr9:71085302-71085821;Right=chr9:71086462-71086545
chr9	CG	SV	71086462	71086545	13	+	.	ID=2344;Type=deletion;Left=chr9:71085302-71085821;Right=chr9:71086462-71086545
chr9	CG	SV	73121629	73292136	41	.	.	ID=2343;Type=deletion;Left=chr9:73121629-73122127+;Right=chr9:73291697-73292136+;Distance=170068;DiscordantMatePairAlignments=41;LeftRepeat=;RightRepeat=MER5A:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	73121629	73122127	41	+	.	ID=2343;Type=deletion;Left=chr9:73121629-73122127;Right=chr9:73291697-73292136
chr9	CG	SV	73291697	73292136	41	+	.	ID=2343;Type=deletion;Left=chr9:73121629-73122127;Right=chr9:73291697-73292136
chr9	CG	SV	78745582	78748445	76	.	.	ID=2340;Type=deletion;Left=chr9:78745582-78745998+;Right=chr9:78747924-78748445+;Distance=2342;DiscordantMatePairAlignments=76;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67936913 (chr9:78745579-78747921);Frequency=0.12
chr9	CG	SV	78745582	78745998	76	+	.	ID=2340;Type=deletion;Left=chr9:78745582-78745998;Right=chr9:78747924-78748445
chr9	CG	SV	78747924	78748445	76	+	.	ID=2340;Type=deletion;Left=chr9:78745582-78745998;Right=chr9:78747924-78748445
chr9	CG	SV	83157745	83160760	16	.	.	ID=2337;Type=deletion;Left=chr9:83157745-83158134+;Right=chr9:83160511-83160760+;Distance=2766;DiscordantMatePairAlignments=16;LeftRepeat=L1M1:LINE:L1;Self chain;RightRepeat=L1PB1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr9	CG	SV	83157745	83158134	16	+	.	ID=2337;Type=deletion;Left=chr9:83157745-83158134;Right=chr9:83160511-83160760
chr9	CG	SV	83160511	83160760	16	+	.	ID=2337;Type=deletion;Left=chr9:83157745-83158134;Right=chr9:83160511-83160760
chr9	CG	SV	83514183	83517080	147	.	.	ID=2336;Type=deletion;Left=chr9:83514183-83514673+;Right=chr9:83516761-83517080+;Distance=2578;DiscordantMatePairAlignments=147;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67720670 (chr9:83514168-83516746);Frequency=1.00
chr9	CG	SV	83514183	83514673	147	+	.	ID=2336;Type=deletion;Left=chr9:83514183-83514673;Right=chr9:83516761-83517080
chr9	CG	SV	83516761	83517080	147	+	.	ID=2336;Type=deletion;Left=chr9:83514183-83514673;Right=chr9:83516761-83517080
chr9	CG	SV	83666906	83667722	11	.	.	ID=2335;Type=deletion;Left=chr9:83666906-83667334+;Right=chr9:83667238-83667722+;Distance=332;DiscordantMatePairAlignments=11;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs34910785 (chr9:83666906-83667238);Frequency=0.18
chr9	CG	SV	83666906	83667334	11	+	.	ID=2335;Type=deletion;Left=chr9:83666906-83667334;Right=chr9:83667238-83667722
chr9	CG	SV	83667238	83667722	11	+	.	ID=2335;Type=deletion;Left=chr9:83666906-83667334;Right=chr9:83667238-83667722
chr9	CG	SV	87091236	87091977	20	.	.	ID=2333;Type=deletion;Left=chr9:87091236-87091780+;Right=chr9:87091543-87091977+;Distance=307;DiscordantMatePairAlignments=20;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs34675880 (chr9:87091225-87091532);Frequency=0.88
chr9	CG	SV	87091236	87091780	20	+	.	ID=2333;Type=deletion;Left=chr9:87091236-87091780;Right=chr9:87091543-87091977
chr9	CG	SV	87091543	87091977	20	+	.	ID=2333;Type=deletion;Left=chr9:87091236-87091780;Right=chr9:87091543-87091977
chr9	CG	SV	90048816	90051231	52	.	.	ID=2332;Type=deletion;Left=chr9:90048816-90049158+;Right=chr9:90050796-90051231+;Distance=1980;DiscordantMatePairAlignments=52;LeftRepeat=;RightRepeat=MER21C:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs71317224 (chr9:90048816-90050796);Frequency=1.00
chr9	CG	SV	90048816	90049158	52	+	.	ID=2332;Type=deletion;Left=chr9:90048816-90049158;Right=chr9:90050796-90051231
chr9	CG	SV	90050796	90051231	52	+	.	ID=2332;Type=deletion;Left=chr9:90048816-90049158;Right=chr9:90050796-90051231
chr9	CG	SV	90482221	90482786	18	.	.	ID=2331;Type=deletion;Left=chr9:90482221-90482763+;Right=chr9:90482563-90482786+;Distance=342;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;Tandem period 18;RightRepeat=Self chain;Tandem period 18;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr9	CG	SV	90482221	90482763	18	+	.	ID=2331;Type=deletion;Left=chr9:90482221-90482763;Right=chr9:90482563-90482786
chr9	CG	SV	90482563	90482786	18	+	.	ID=2331;Type=deletion;Left=chr9:90482221-90482763;Right=chr9:90482563-90482786
chr9	CG	SV	100249167	100249909	18	.	.	ID=2327;Type=deletion;Left=chr9:100249167-100249628+;Right=chr9:100249481-100249909+;Distance=314;DiscordantMatePairAlignments=18;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L3:LINE:CR1;LeftGenes=NM_005458:-;RightGenes=NM_005458:-;XRef=rs6151093 (chr9:100249151-100249465);Frequency=0.18
chr9	CG	SV	100249167	100249628	18	+	.	ID=2327;Type=deletion;Left=chr9:100249167-100249628;Right=chr9:100249481-100249909
chr9	CG	SV	100249481	100249909	18	+	.	ID=2327;Type=deletion;Left=chr9:100249167-100249628;Right=chr9:100249481-100249909
chr9	CG	SV	100348867	100352034	122	.	.	ID=2326;Type=deletion;Left=chr9:100348867-100349261+;Right=chr9:100351488-100352034+;Distance=2621;DiscordantMatePairAlignments=122;LeftRepeat=;RightRepeat=;LeftGenes=NM_005458:-;RightGenes=NM_005458:-;XRef=rs71885665 (chr9:100348864-100351485);Frequency=0.82
chr9	CG	SV	100348867	100349261	122	+	.	ID=2326;Type=deletion;Left=chr9:100348867-100349261;Right=chr9:100351488-100352034
chr9	CG	SV	100351488	100352034	122	+	.	ID=2326;Type=deletion;Left=chr9:100348867-100349261;Right=chr9:100351488-100352034
chr9	CG	SV	103221638	103222241	59	.	.	ID=902;Type=tandem-duplication;Left=chr9:103221638-103221936-;Right=chr9:103221931-103222241-;Distance=305;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.30
chr9	CG	SV	103221638	103221936	59	-	.	ID=902;Type=tandem-duplication;Left=chr9:103221638-103221936;Right=chr9:103221931-103222241
chr9	CG	SV	103221931	103222241	59	-	.	ID=902;Type=tandem-duplication;Left=chr9:103221638-103221936;Right=chr9:103221931-103222241
chr9	CG	SV	103259526	103260642	125	.	.	ID=2325;Type=deletion;Left=chr9:103259526-103259910+;Right=chr9:103260209-103260642+;Distance=683;DiscordantMatePairAlignments=125;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr9	CG	SV	103259526	103259910	125	+	.	ID=2325;Type=deletion;Left=chr9:103259526-103259910;Right=chr9:103260209-103260642
chr9	CG	SV	103260209	103260642	125	+	.	ID=2325;Type=deletion;Left=chr9:103259526-103259910;Right=chr9:103260209-103260642
chr9	CG	SV	103483792	103484815	100	.	.	ID=2324;Type=deletion;Left=chr9:103483792-103484202+;Right=chr9:103484558-103484815+;Distance=766;DiscordantMatePairAlignments=100;LeftRepeat=;RightRepeat=;LeftGenes=NM_133445:-;RightGenes=NM_133445:-;XRef=rs66469119 (chr9:103483782-103484548);Frequency=1.00
chr9	CG	SV	103483792	103484202	100	+	.	ID=2324;Type=deletion;Left=chr9:103483792-103484202;Right=chr9:103484558-103484815
chr9	CG	SV	103484558	103484815	100	+	.	ID=2324;Type=deletion;Left=chr9:103483792-103484202;Right=chr9:103484558-103484815
chr9	CG	SV	106856116	106857517	13	.	.	ID=246;Type=distal-duplication;Left=chr9:106856116-106856457-;Right=chr9:106857169-106857517+;Distance=712;DiscordantMatePairAlignments=13;LeftRepeat=HUERS-P1:LTR:ERV1;Self chain;RightRepeat=LTR57-int:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr9	CG	SV	106856116	106856457	13	-	.	ID=246;Type=distal-duplication;Left=chr9:106856116-106856457;Right=chr9:106857169-106857517
chr9	CG	SV	106857169	106857517	13	-	.	ID=246;Type=distal-duplication;Left=chr9:106856116-106856457;Right=chr9:106857169-106857517
chr9	CG	SV	106856800	106857162	48	.	.	ID=3559;Type=distal-duplication;Left=chr9:106856800-106857127+;Right=chr9:106856781-106857162-;Distance=362;DiscordantMatePairAlignments=48;LeftRepeat=Self chain;RightRepeat=LTR57-int:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr9	CG	SV	106856800	106857127	48	+	.	ID=3559;Type=distal-duplication;Left=chr9:106856800-106857127;Right=chr9:106856781-106857162
chr9	CG	SV	106856781	106857162	48	+	.	ID=3559;Type=distal-duplication;Left=chr9:106856800-106857127;Right=chr9:106856781-106857162
chr9	CG	SV	109577356	109580806	29	.	.	ID=2323;Type=deletion;Left=chr9:109577356-109577692+;Right=chr9:109580432-109580806+;Distance=3076;DiscordantMatePairAlignments=29;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67559039 (chr9:109577341-109580416);Frequency=0.94
chr9	CG	SV	109577356	109577692	29	+	.	ID=2323;Type=deletion;Left=chr9:109577356-109577692;Right=chr9:109580432-109580806
chr9	CG	SV	109580432	109580806	29	+	.	ID=2323;Type=deletion;Left=chr9:109577356-109577692;Right=chr9:109580432-109580806
chr9	CG	SV	111470033	111470818	10	.	.	ID=2322;Type=deletion;Left=chr9:111470033-111470510+;Right=chr9:111470348-111470818+;Distance=315;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=L4:LINE:RTE;LeftGenes=NM_001037293:+;NM_053016:+;RightGenes=NM_001037293:+;NM_053016:+;XRef=rs68118332 (chr9:111470033-111470348);Frequency=0.65
chr9	CG	SV	111470033	111470510	10	+	.	ID=2322;Type=deletion;Left=chr9:111470033-111470510;Right=chr9:111470348-111470818
chr9	CG	SV	111470348	111470818	10	+	.	ID=2322;Type=deletion;Left=chr9:111470033-111470510;Right=chr9:111470348-111470818
chr9	CG	SV	114976918	114977682	17	.	.	ID=2319;Type=deletion;Left=chr9:114976918-114977319+;Right=chr9:114977213-114977682+;Distance=295;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=;LeftGenes=NM_015258:-;RightGenes=NM_015258:-;XRef=rs67956937 (chr9:114976918-114977213);Frequency=1.00
chr9	CG	SV	114976918	114977319	17	+	.	ID=2319;Type=deletion;Left=chr9:114976918-114977319;Right=chr9:114977213-114977682
chr9	CG	SV	114977213	114977682	17	+	.	ID=2319;Type=deletion;Left=chr9:114976918-114977319;Right=chr9:114977213-114977682
chr9	CG	SV	118516898	118517643	45	.	.	ID=2312;Type=deletion;Left=chr9:118516898-118517283+;Right=chr9:118517232-118517643+;Distance=334;DiscordantMatePairAlignments=45;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_014010:-;NM_198186:-;NM_198187:-;RightGenes=NM_014010:-;NM_198186:-;NM_198187:-;XRef=rs72440176 (chr9:118516898-118517232);Frequency=0.94
chr9	CG	SV	118516898	118517283	45	+	.	ID=2312;Type=deletion;Left=chr9:118516898-118517283;Right=chr9:118517232-118517643
chr9	CG	SV	118517232	118517643	45	+	.	ID=2312;Type=deletion;Left=chr9:118516898-118517283;Right=chr9:118517232-118517643
chr9	CG	SV	119455758	119456103	35	-	.	ID=101;Type=interchromosomal;Left=chr9:119455758-119456103-;Right=chr21:14091937-14092302+;Distance=;DiscordantMatePairAlignments=35;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr21	CG	SV	14091937	14092302	35	-	.	ID=101;Type=interchromosomal;Left=chr9:119455758-119456103-;Right=chr21:14091937-14092302+;Distance=;DiscordantMatePairAlignments=35;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	121571666	121572440	32	.	.	ID=2311;Type=deletion;Left=chr9:121571666-121572161+;Right=chr9:121571984-121572440+;Distance=318;DiscordantMatePairAlignments=32;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71317246 (chr9:121571666-121571984);Frequency=1.00
chr9	CG	SV	121571666	121572161	32	+	.	ID=2311;Type=deletion;Left=chr9:121571666-121572161;Right=chr9:121571984-121572440
chr9	CG	SV	121571984	121572440	32	+	.	ID=2311;Type=deletion;Left=chr9:121571666-121572161;Right=chr9:121571984-121572440
chr9	CG	SV	121829943	121849385	16	.	.	ID=3558;Type=probable-inversion;Left=chr9:121829943-121830258+;Right=chr9:121849009-121849385-;Distance=19442;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=Tigger3b:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	121829943	121830258	16	+	.	ID=3558;Type=probable-inversion;Left=chr9:121829943-121830258;Right=chr9:121849009-121849385
chr9	CG	SV	121849009	121849385	16	+	.	ID=3558;Type=probable-inversion;Left=chr9:121829943-121830258;Right=chr9:121849009-121849385
chr9	CG	SV	122527194	123058804	37	.	.	ID=901;Type=tandem-duplication;Left=chr9:122527194-122527431-;Right=chr9:123058384-123058804-;Distance=531373;DiscordantMatePairAlignments=37;LeftRepeat=;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	122527194	122527431	37	-	.	ID=901;Type=tandem-duplication;Left=chr9:122527194-122527431;Right=chr9:123058384-123058804
chr9	CG	SV	123058384	123058804	37	-	.	ID=901;Type=tandem-duplication;Left=chr9:122527194-122527431;Right=chr9:123058384-123058804
chr9	CG	SV	122733488	122775193	34	.	.	ID=3557;Type=probable-inversion;Left=chr9:122733488-122733830+;Right=chr9:122774765-122775193-;Distance=41705;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;RightRepeat=(TTTAA)n:Simple_repeat:Simple_repeat;LeftGenes=;RightGenes=NM_001735:-;XRef=;Frequency=0.00
chr9	CG	SV	122733488	122733830	34	+	.	ID=3557;Type=probable-inversion;Left=chr9:122733488-122733830;Right=chr9:122774765-122775193
chr9	CG	SV	122774765	122775193	34	+	.	ID=3557;Type=probable-inversion;Left=chr9:122733488-122733830;Right=chr9:122774765-122775193
chr9	CG	SV	123266358	123267639	65	.	.	ID=900;Type=tandem-duplication;Left=chr9:123266358-123266724-;Right=chr9:123267272-123267639-;Distance=915;DiscordantMatePairAlignments=65;LeftRepeat=(CAAAAA)n:Simple_repeat:Simple_repeat;Tandem AAAACA;Tandem CAAAA;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=NR_003191:-;RightGenes=NR_003191:-;XRef=;Frequency=0.24
chr9	CG	SV	123266358	123266724	65	-	.	ID=900;Type=tandem-duplication;Left=chr9:123266358-123266724;Right=chr9:123267272-123267639
chr9	CG	SV	123267272	123267639	65	-	.	ID=900;Type=tandem-duplication;Left=chr9:123266358-123266724;Right=chr9:123267272-123267639
chr9	CG	SV	130402343	130405719	181	.	.	ID=2308;Type=deletion;Left=chr9:130402343-130402792+;Right=chr9:130405306-130405719+;Distance=2963;DiscordantMatePairAlignments=181;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001130438:+;NM_003127:+;RightGenes=NM_001130438:+;NM_003127:+;XRef=;Frequency=0.00
chr9	CG	SV	130402343	130402792	181	+	.	ID=2308;Type=deletion;Left=chr9:130402343-130402792;Right=chr9:130405306-130405719
chr9	CG	SV	130405306	130405719	181	+	.	ID=2308;Type=deletion;Left=chr9:130402343-130402792;Right=chr9:130405306-130405719
chr9	CG	SV	131197964	131198965	16	.	.	ID=899;Type=tandem-duplication;Left=chr9:131197964-131198388-;Right=chr9:131198618-131198965-;Distance=577;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 12;Tandem period 23;RightRepeat=Self chain;Tandem period 12;Tandem period 23;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	131197964	131198388	16	-	.	ID=899;Type=tandem-duplication;Left=chr9:131197964-131198388;Right=chr9:131198618-131198965
chr9	CG	SV	131198618	131198965	16	-	.	ID=899;Type=tandem-duplication;Left=chr9:131197964-131198388;Right=chr9:131198618-131198965
chr9	CG	SV	132070467	132075060	58	.	.	ID=2306;Type=deletion;Left=chr9:132070467-132070896+;Right=chr9:132074626-132075060+;Distance=4159;DiscordantMatePairAlignments=58;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr9	CG	SV	132070467	132070896	58	+	.	ID=2306;Type=deletion;Left=chr9:132070467-132070896;Right=chr9:132074626-132075060
chr9	CG	SV	132074626	132075060	58	+	.	ID=2306;Type=deletion;Left=chr9:132070467-132070896;Right=chr9:132074626-132075060
chr9	CG	SV	132372948	132377543	21	.	.	ID=2305;Type=deletion;Left=chr9:132372948-132373308+;Right=chr9:132377243-132377543+;Distance=4295;DiscordantMatePairAlignments=21;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L1PB2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr9	CG	SV	132372948	132373308	21	+	.	ID=2305;Type=deletion;Left=chr9:132372948-132373308;Right=chr9:132377243-132377543
chr9	CG	SV	132377243	132377543	21	+	.	ID=2305;Type=deletion;Left=chr9:132372948-132373308;Right=chr9:132377243-132377543
chr9	CG	SV	134378703	134379060	50	-	.	ID=819;Type=interchromosomal;Left=chr9:134378703-134379060-;Right=chr13:31015521-31015963-;Distance=;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_207417:+;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	31015521	31015963	50	-	.	ID=819;Type=interchromosomal;Left=chr9:134378703-134379060-;Right=chr13:31015521-31015963-;Distance=;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_207417:+;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	134748910	134750048	31	.	.	ID=2302;Type=deletion;Left=chr9:134748910-134749326+;Right=chr9:134749954-134750048+;Distance=1044;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=;LeftGenes=NM_018956:+;RightGenes=NM_018956:+;XRef=;Frequency=0.35
chr9	CG	SV	134748910	134749326	31	+	.	ID=2302;Type=deletion;Left=chr9:134748910-134749326;Right=chr9:134749954-134750048
chr9	CG	SV	134749954	134750048	31	+	.	ID=2302;Type=deletion;Left=chr9:134748910-134749326;Right=chr9:134749954-134750048
chr9	CG	SV	135369043	135369798	39	.	.	ID=2300;Type=deletion;Left=chr9:135369043-135369472+;Right=chr9:135369385-135369798+;Distance=342;DiscordantMatePairAlignments=39;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35795497 (chr9:135369031-135369373);Frequency=1.00
chr9	CG	SV	135369043	135369472	39	+	.	ID=2300;Type=deletion;Left=chr9:135369043-135369472;Right=chr9:135369385-135369798
chr9	CG	SV	135369385	135369798	39	+	.	ID=2300;Type=deletion;Left=chr9:135369043-135369472;Right=chr9:135369385-135369798
chr9	CG	SV	135403930	135404390	17	.	.	ID=2298;Type=complex;Left=chr9:135403930-135404436+;Right=chr9:135404254-135404390+;Distance=324;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=ERVL-E:LTR:ERVL;LeftGenes=NM_001145320:+;NM_014694:+;RightGenes=NM_001145320:+;NM_014694:+;XRef=;Frequency=1.00
chr9	CG	SV	135403930	135404436	17	+	.	ID=2298;Type=complex;Left=chr9:135403930-135404436;Right=chr9:135404254-135404390
chr9	CG	SV	135404254	135404390	17	+	.	ID=2298;Type=complex;Left=chr9:135403930-135404436;Right=chr9:135404254-135404390
chr9	CG	SV	135403937	135404764	33	.	.	ID=2299;Type=complex;Left=chr9:135403937-135404328+;Right=chr9:135404261-135404764+;Distance=324;DiscordantMatePairAlignments=33;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=ERVL-E:LTR:ERVL;LeftGenes=NM_001145320:+;NM_014694:+;RightGenes=NM_001145320:+;NM_014694:+;XRef=rs67544107 (chr9:135403937-135404261);Frequency=1.00
chr9	CG	SV	135403937	135404328	33	+	.	ID=2299;Type=complex;Left=chr9:135403937-135404328;Right=chr9:135404261-135404764
chr9	CG	SV	135404261	135404764	33	+	.	ID=2299;Type=complex;Left=chr9:135403937-135404328;Right=chr9:135404261-135404764
chr9	CG	SV	135443419	135443656	16	.	.	ID=897;Type=tandem-duplication;Left=chr9:135443419-135443524-;Right=chr9:135443507-135443656-;Distance=132;DiscordantMatePairAlignments=16;LeftRepeat=Tandem period 17;RightRepeat=Tandem period 17;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	135443419	135443524	16	-	.	ID=897;Type=tandem-duplication;Left=chr9:135443419-135443524;Right=chr9:135443507-135443656
chr9	CG	SV	135443507	135443656	16	-	.	ID=897;Type=tandem-duplication;Left=chr9:135443419-135443524;Right=chr9:135443507-135443656
chr9	CG	SV	135615015	135616563	95	.	.	ID=2297;Type=deletion;Left=chr9:135615015-135615379+;Right=chr9:135616088-135616563+;Distance=1073;DiscordantMatePairAlignments=95;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr9	CG	SV	135615015	135615379	95	+	.	ID=2297;Type=deletion;Left=chr9:135615015-135615379;Right=chr9:135616088-135616563
chr9	CG	SV	135616088	135616563	95	+	.	ID=2297;Type=deletion;Left=chr9:135615015-135615379;Right=chr9:135616088-135616563
chr9	CG	SV	137353887	137357917	404	.	.	ID=2295;Type=deletion;Left=chr9:137353887-137354304+;Right=chr9:137357427-137357917+;Distance=3540;DiscordantMatePairAlignments=404;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66913532 (chr9:137353884-137357424);Frequency=0.82
chr9	CG	SV	137353887	137354304	404	+	.	ID=2295;Type=deletion;Left=chr9:137353887-137354304;Right=chr9:137357427-137357917
chr9	CG	SV	137357427	137357917	404	+	.	ID=2295;Type=deletion;Left=chr9:137353887-137354304;Right=chr9:137357427-137357917
chr9	CG	SV	138547345	138548133	19	.	.	ID=2294;Type=deletion;Left=chr9:138547345-138547880+;Right=chr9:138547616-138548133+;Distance=271;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_017617:-;RightGenes=NM_017617:-;XRef=rs10525313 (chr9:138547345-138547608);Frequency=0.47
chr9	CG	SV	138547345	138547880	19	+	.	ID=2294;Type=deletion;Left=chr9:138547345-138547880;Right=chr9:138547616-138548133
chr9	CG	SV	138547616	138548133	19	+	.	ID=2294;Type=deletion;Left=chr9:138547345-138547880;Right=chr9:138547616-138548133
chr9	CG	SV	139683413	139683852	20	.	.	ID=896;Type=tandem-duplication;Left=chr9:139683413-139683588-;Right=chr9:139683660-139683852-;Distance=264;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;Tandem period 37;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_001145527:+;NM_024757:+;RightGenes=NM_001145527:+;NM_024757:+;XRef=;Frequency=0.88
chr9	CG	SV	139683413	139683588	20	-	.	ID=896;Type=tandem-duplication;Left=chr9:139683413-139683588;Right=chr9:139683660-139683852
chr9	CG	SV	139683660	139683852	20	-	.	ID=896;Type=tandem-duplication;Left=chr9:139683413-139683588;Right=chr9:139683660-139683852
chr9	CG	SV	139892490	139897419	91	.	.	ID=2292;Type=complex;Left=chr9:139892490-139892712+;Right=chr9:139897015-139897419+;Distance=4525;DiscordantMatePairAlignments=91;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000718:+;RightGenes=NM_000718:+;XRef=;Frequency=1.00
chr9	CG	SV	139892490	139892712	91	+	.	ID=2292;Type=complex;Left=chr9:139892490-139892712;Right=chr9:139897015-139897419
chr9	CG	SV	139897015	139897419	91	+	.	ID=2292;Type=complex;Left=chr9:139892490-139892712;Right=chr9:139897015-139897419
chr9	CG	SV	139893433	139897492	29	.	.	ID=2290;Type=complex;Left=chr9:139893433-139893544+;Right=chr9:139897017-139897492+;Distance=3584;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000718:+;RightGenes=NM_000718:+;XRef=rs72411053 (chr9:139893431-139897015);Frequency=1.00
chr9	CG	SV	139893433	139893544	29	+	.	ID=2290;Type=complex;Left=chr9:139893433-139893544;Right=chr9:139897017-139897492
chr9	CG	SV	139897017	139897492	29	+	.	ID=2290;Type=complex;Left=chr9:139893433-139893544;Right=chr9:139897017-139897492
chr10	CG	SV	3443206	3443577	10	.	.	ID=894;Type=tandem-duplication;Left=chr10:3443206-3443354-;Right=chr10:3443489-3443577-;Distance=223;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 15;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr10	CG	SV	3443206	3443354	10	-	.	ID=894;Type=tandem-duplication;Left=chr10:3443206-3443354;Right=chr10:3443489-3443577
chr10	CG	SV	3443489	3443577	10	-	.	ID=894;Type=tandem-duplication;Left=chr10:3443206-3443354;Right=chr10:3443489-3443577
chr10	CG	SV	4280063	4282082	75	.	.	ID=2286;Type=deletion;Left=chr10:4280063-4280540+;Right=chr10:4281683-4282082+;Distance=1620;DiscordantMatePairAlignments=75;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66666838 (chr10:4280063-4281683);Frequency=1.00
chr10	CG	SV	4280063	4280540	75	+	.	ID=2286;Type=deletion;Left=chr10:4280063-4280540;Right=chr10:4281683-4282082
chr10	CG	SV	4281683	4282082	75	+	.	ID=2286;Type=deletion;Left=chr10:4280063-4280540;Right=chr10:4281683-4282082
chr10	CG	SV	4698518	4700931	71	.	.	ID=2284;Type=deletion;Left=chr10:4698518-4698988+;Right=chr10:4700522-4700931+;Distance=2004;DiscordantMatePairAlignments=71;LeftRepeat=L1MB7:LINE:L1;RightRepeat=L1MB7:LINE:L1;LeftGenes=NR_024475:-;RightGenes=NR_024475:-;XRef=;Frequency=0.88
chr10	CG	SV	4698518	4698988	71	+	.	ID=2284;Type=deletion;Left=chr10:4698518-4698988;Right=chr10:4700522-4700931
chr10	CG	SV	4700522	4700931	71	+	.	ID=2284;Type=deletion;Left=chr10:4698518-4698988;Right=chr10:4700522-4700931
chr10	CG	SV	5191836	5315036	12	.	.	ID=893;Type=tandem-duplication;Left=chr10:5191836-5192144-;Right=chr10:5314773-5315036-;Distance=122892;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_027916:-;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	5191836	5192144	12	-	.	ID=893;Type=tandem-duplication;Left=chr10:5191836-5192144;Right=chr10:5314773-5315036
chr10	CG	SV	5314773	5315036	12	-	.	ID=893;Type=tandem-duplication;Left=chr10:5191836-5192144;Right=chr10:5314773-5315036
chr10	CG	SV	5627100	5677599	221	.	.	ID=2283;Type=deletion;Left=chr10:5627100-5627598+;Right=chr10:5677118-5677599+;Distance=50018;DiscordantMatePairAlignments=221;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	5627100	5627598	221	+	.	ID=2283;Type=deletion;Left=chr10:5627100-5627598;Right=chr10:5677118-5677599
chr10	CG	SV	5677118	5677599	221	+	.	ID=2283;Type=deletion;Left=chr10:5627100-5627598;Right=chr10:5677118-5677599
chr10	CG	SV	6137382	6138298	207	.	.	ID=2282;Type=deletion;Left=chr10:6137382-6137799+;Right=chr10:6137880-6138298+;Distance=498;DiscordantMatePairAlignments=207;LeftRepeat=MER5B:DNA:MER1_type;RightRepeat=;LeftGenes=NM_000417:-;RightGenes=NM_000417:-;XRef=rs71389922 (chr10:6137392-6137890);Frequency=1.00
chr10	CG	SV	6137382	6137799	207	+	.	ID=2282;Type=deletion;Left=chr10:6137382-6137799;Right=chr10:6137880-6138298
chr10	CG	SV	6137880	6138298	207	+	.	ID=2282;Type=deletion;Left=chr10:6137382-6137799;Right=chr10:6137880-6138298
chr10	CG	SV	6292018	6293315	17	.	.	ID=2281;Type=deletion;Left=chr10:6292018-6292363+;Right=chr10:6292974-6293315+;Distance=956;DiscordantMatePairAlignments=17;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_001145443:+;NM_004566:+;RightGenes=NM_001145443:+;NM_004566:+;XRef=;Frequency=0.94
chr10	CG	SV	6292018	6292363	17	+	.	ID=2281;Type=deletion;Left=chr10:6292018-6292363;Right=chr10:6292974-6293315
chr10	CG	SV	6292974	6293315	17	+	.	ID=2281;Type=deletion;Left=chr10:6292018-6292363;Right=chr10:6292974-6293315
chr10	CG	SV	6451577	6458174	196	.	.	ID=2280;Type=deletion;Left=chr10:6451577-6452025+;Right=chr10:6457643-6458174+;Distance=6066;DiscordantMatePairAlignments=196;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71389924 (chr10:6451586-6457652);Frequency=0.94
chr10	CG	SV	6451577	6452025	196	+	.	ID=2280;Type=deletion;Left=chr10:6451577-6452025;Right=chr10:6457643-6458174
chr10	CG	SV	6457643	6458174	196	+	.	ID=2280;Type=deletion;Left=chr10:6451577-6452025;Right=chr10:6457643-6458174
chr10	CG	SV	6687905	6689087	54	.	.	ID=2279;Type=deletion;Left=chr10:6687905-6688369+;Right=chr10:6688864-6689087+;Distance=959;DiscordantMatePairAlignments=54;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	6687905	6688369	54	+	.	ID=2279;Type=deletion;Left=chr10:6687905-6688369;Right=chr10:6688864-6689087
chr10	CG	SV	6688864	6689087	54	+	.	ID=2279;Type=deletion;Left=chr10:6687905-6688369;Right=chr10:6688864-6689087
chr10	CG	SV	7117046	7118735	197	.	.	ID=2278;Type=deletion;Left=chr10:7117046-7117498+;Right=chr10:7118307-7118735+;Distance=1261;DiscordantMatePairAlignments=197;LeftRepeat=;RightRepeat=L1ME3A:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr10	CG	SV	7117046	7117498	197	+	.	ID=2278;Type=deletion;Left=chr10:7117046-7117498;Right=chr10:7118307-7118735
chr10	CG	SV	7118307	7118735	197	+	.	ID=2278;Type=deletion;Left=chr10:7117046-7117498;Right=chr10:7118307-7118735
chr10	CG	SV	12907008	12907556	10	.	.	ID=244;Type=probable-inversion;Left=chr10:12907008-12907129-;Right=chr10:12907196-12907556+;Distance=67;DiscordantMatePairAlignments=10;LeftRepeat=MADE1:DNA:Mariner;Self chain;RightRepeat=Self chain;LeftGenes=NM_020397:+;NM_153498:+;RightGenes=NM_020397:+;NM_153498:+;XRef=;Frequency=1.00
chr10	CG	SV	12907008	12907129	10	-	.	ID=244;Type=probable-inversion;Left=chr10:12907008-12907129;Right=chr10:12907196-12907556
chr10	CG	SV	12907196	12907556	10	-	.	ID=244;Type=probable-inversion;Left=chr10:12907008-12907129;Right=chr10:12907196-12907556
chr10	CG	SV	13144691	13145643	36	.	.	ID=243;Type=probable-inversion;Left=chr10:13144691-13144973-;Right=chr10:13145283-13145643+;Distance=310;DiscordantMatePairAlignments=36;LeftRepeat=LTR8:LTR:ERV1;Tandem period 45;RightRepeat=LTR8:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr10	CG	SV	13144691	13144973	36	-	.	ID=243;Type=probable-inversion;Left=chr10:13144691-13144973;Right=chr10:13145283-13145643
chr10	CG	SV	13145283	13145643	36	-	.	ID=243;Type=probable-inversion;Left=chr10:13144691-13144973;Right=chr10:13145283-13145643
chr10	CG	SV	18543082	18544043	149	.	.	ID=2275;Type=deletion;Left=chr10:18543082-18543505+;Right=chr10:18543596-18544043+;Distance=514;DiscordantMatePairAlignments=149;LeftRepeat=;RightRepeat=;LeftGenes=NM_001167945:+;NM_201571:+;NM_201572:+;NM_201593:+;NM_201596:+;NM_201597:+;RightGenes=NM_001167945:+;NM_201571:+;NM_201572:+;NM_201593:+;NM_201596:+;NM_201597:+;XRef=rs66880279 (chr10:18543081-18543595);Frequency=0.88
chr10	CG	SV	18543082	18543505	149	+	.	ID=2275;Type=deletion;Left=chr10:18543082-18543505;Right=chr10:18543596-18544043
chr10	CG	SV	18543596	18544043	149	+	.	ID=2275;Type=deletion;Left=chr10:18543082-18543505;Right=chr10:18543596-18544043
chr10	CG	SV	25138095	25138802	12	.	.	ID=2273;Type=deletion;Left=chr10:25138095-25138573+;Right=chr10:25138433-25138802+;Distance=338;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10527253 (chr10:25138087-25138425);Frequency=1.00
chr10	CG	SV	25138095	25138573	12	+	.	ID=2273;Type=deletion;Left=chr10:25138095-25138573;Right=chr10:25138433-25138802
chr10	CG	SV	25138433	25138802	12	+	.	ID=2273;Type=deletion;Left=chr10:25138095-25138573;Right=chr10:25138433-25138802
chr10	CG	SV	27039042	27042501	24	.	.	ID=2271;Type=deletion;Left=chr10:27039042-27039493+;Right=chr10:27042180-27042501+;Distance=3138;DiscordantMatePairAlignments=24;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_014317:+;RightGenes=NM_014317:+;XRef=rs67040591 (chr10:27038982-27042120);Frequency=0.88
chr10	CG	SV	27039042	27039493	24	+	.	ID=2271;Type=deletion;Left=chr10:27039042-27039493;Right=chr10:27042180-27042501
chr10	CG	SV	27042180	27042501	24	+	.	ID=2271;Type=deletion;Left=chr10:27039042-27039493;Right=chr10:27042180-27042501
chr10	CG	SV	27264209	27268467	18	.	.	ID=2270;Type=distal-duplication;Left=chr10:27264209-27264619+;Right=chr10:27268094-27268467+;Distance=3885;DiscordantMatePairAlignments=18;LeftRepeat=AluSc:SINE:Alu;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NR_026795:-;RightGenes=NR_026795:-;XRef=rs72174406 (chr10:27264209-27268094);Frequency=0.76
chr10	CG	SV	27264209	27264619	18	+	.	ID=2270;Type=distal-duplication;Left=chr10:27264209-27264619;Right=chr10:27268094-27268467
chr10	CG	SV	27268094	27268467	18	+	.	ID=2270;Type=distal-duplication;Left=chr10:27264209-27264619;Right=chr10:27268094-27268467
chr10	CG	SV	27264342	27269313	18	.	.	ID=890;Type=distal-duplication;Left=chr10:27264342-27264633-;Right=chr10:27268988-27269313-;Distance=4680;DiscordantMatePairAlignments=18;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NR_026795:-;RightGenes=NR_026795:-;XRef=;Frequency=0.76
chr10	CG	SV	27264342	27264633	18	-	.	ID=890;Type=distal-duplication;Left=chr10:27264342-27264633;Right=chr10:27268988-27269313
chr10	CG	SV	27268988	27269313	18	-	.	ID=890;Type=distal-duplication;Left=chr10:27264342-27264633;Right=chr10:27268988-27269313
chr10	CG	SV	32297888	32301019	99	.	.	ID=2268;Type=deletion;Left=chr10:32297888-32298263+;Right=chr10:32300620-32301019+;Distance=2732;DiscordantMatePairAlignments=99;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72294841 (chr10:32297901-32300633);Frequency=0.88
chr10	CG	SV	32297888	32298263	99	+	.	ID=2268;Type=deletion;Left=chr10:32297888-32298263;Right=chr10:32300620-32301019
chr10	CG	SV	32300620	32301019	99	+	.	ID=2268;Type=deletion;Left=chr10:32297888-32298263;Right=chr10:32300620-32301019
chr10	CG	SV	46508391	46509024	46	.	.	ID=2252;Type=complex;Left=chr10:46508391-46508928+;Right=chr10:46508719-46509024+;Distance=328;DiscordantMatePairAlignments=46;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs33965796 (chr10:46508381-46508709);Frequency=0.00
chr10	CG	SV	46508391	46508928	46	+	.	ID=2252;Type=complex;Left=chr10:46508391-46508928;Right=chr10:46508719-46509024
chr10	CG	SV	46508719	46509024	46	+	.	ID=2252;Type=complex;Left=chr10:46508391-46508928;Right=chr10:46508719-46509024
chr10	CG	SV	46508391	46509189	33	.	.	ID=2253;Type=complex;Left=chr10:46508391-46508774+;Right=chr10:46508719-46509189+;Distance=328;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10705841 (chr10:46508391-46508719);Frequency=0.00
chr10	CG	SV	46508391	46508774	33	+	.	ID=2253;Type=complex;Left=chr10:46508391-46508774;Right=chr10:46508719-46509189
chr10	CG	SV	46508719	46509189	33	+	.	ID=2253;Type=complex;Left=chr10:46508391-46508774;Right=chr10:46508719-46509189
chr10	CG	SV	46548040	46569521	34	.	.	ID=859;Type=tandem-duplication;Left=chr10:46548040-46548420-;Right=chr10:46569068-46569521-;Distance=21101;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;RightRepeat=L1MD2:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	46548040	46548420	34	-	.	ID=859;Type=tandem-duplication;Left=chr10:46548040-46548420;Right=chr10:46569068-46569521
chr10	CG	SV	46569068	46569521	34	-	.	ID=859;Type=tandem-duplication;Left=chr10:46548040-46548420;Right=chr10:46569068-46569521
chr10	CG	SV	47112730	47113531	67	.	.	ID=2248;Type=deletion;Left=chr10:47112730-47113263+;Right=chr10:47113168-47113531+;Distance=438;DiscordantMatePairAlignments=67;LeftRepeat=(CCCTAA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem CTAACT;RightRepeat=(CCCTAA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem CTAACT;LeftGenes=;RightGenes=;XRef=rs71702761 (chr10:47112617-47113103);Frequency=1.00
chr10	CG	SV	47112730	47113263	67	+	.	ID=2248;Type=deletion;Left=chr10:47112730-47113263;Right=chr10:47113168-47113531
chr10	CG	SV	47113168	47113531	67	+	.	ID=2248;Type=deletion;Left=chr10:47112730-47113263;Right=chr10:47113168-47113531
chr10	CG	SV	49587177	49587923	25	.	.	ID=2247;Type=deletion;Left=chr10:49587177-49587621+;Right=chr10:49587500-49587923+;Distance=323;DiscordantMatePairAlignments=25;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_020945:+;RightGenes=NM_020945:+;XRef=rs66463113 (chr10:49587162-49587485);Frequency=1.00
chr10	CG	SV	49587177	49587621	25	+	.	ID=2247;Type=deletion;Left=chr10:49587177-49587621;Right=chr10:49587500-49587923
chr10	CG	SV	49587500	49587923	25	+	.	ID=2247;Type=deletion;Left=chr10:49587177-49587621;Right=chr10:49587500-49587923
chr10	CG	SV	54453548	54459257	22	.	.	ID=2245;Type=deletion;Left=chr10:54453548-54453908+;Right=chr10:54458835-54459257+;Distance=5287;DiscordantMatePairAlignments=22;LeftRepeat=LTR8:LTR:ERV1;Self chain;RightRepeat=HERV30:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr10	CG	SV	54453548	54453908	22	+	.	ID=2245;Type=deletion;Left=chr10:54453548-54453908;Right=chr10:54458835-54459257
chr10	CG	SV	54458835	54459257	22	+	.	ID=2245;Type=deletion;Left=chr10:54453548-54453908;Right=chr10:54458835-54459257
chr10	CG	SV	58927383	58928366	26	.	.	ID=227;Type=probable-inversion;Left=chr10:58927383-58927664-;Right=chr10:58927992-58928366+;Distance=328;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;RightRepeat=MIRb:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr10	CG	SV	58927383	58927664	26	-	.	ID=227;Type=probable-inversion;Left=chr10:58927383-58927664;Right=chr10:58927992-58928366
chr10	CG	SV	58927992	58928366	26	-	.	ID=227;Type=probable-inversion;Left=chr10:58927383-58927664;Right=chr10:58927992-58928366
chr10	CG	SV	58966710	58967368	17	.	.	ID=2242;Type=deletion;Left=chr10:58966710-58967266+;Right=chr10:58967027-58967368+;Distance=317;DiscordantMatePairAlignments=17;LeftRepeat=MIR3:SINE:MIR;Self chain;RightRepeat=MIR3:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=rs72065370 (chr10:58966714-58967031);Frequency=0.45
chr10	CG	SV	58966710	58967266	17	+	.	ID=2242;Type=deletion;Left=chr10:58966710-58967266;Right=chr10:58967027-58967368
chr10	CG	SV	58967027	58967368	17	+	.	ID=2242;Type=deletion;Left=chr10:58966710-58967266;Right=chr10:58967027-58967368
chr10	CG	SV	59943899	72057756	35	.	.	ID=3546;Type=complex;Left=chr10:59943899-59944323+;Right=chr10:72057431-72057756-;Distance=12113857;DiscordantMatePairAlignments=35;LeftRepeat=Self chain;RightRepeat=L1MB7:LINE:L1;Self chain;LeftGenes=NM_001080512:+;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	59943899	59944323	35	+	.	ID=3546;Type=complex;Left=chr10:59943899-59944323;Right=chr10:72057431-72057756
chr10	CG	SV	72057431	72057756	35	+	.	ID=3546;Type=complex;Left=chr10:59943899-59944323;Right=chr10:72057431-72057756
chr10	CG	SV	62860591	72058325	21	.	.	ID=2240;Type=complex;Left=chr10:62860591-62860972+;Right=chr10:72057866-72058325+;Distance=9197275;DiscordantMatePairAlignments=21;LeftRepeat=L1MC1:LINE:L1;Self chain;RightRepeat=L1MB7:LINE:L1;Self chain;LeftGenes=NM_178505:-;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	62860591	62860972	21	+	.	ID=2240;Type=complex;Left=chr10:62860591-62860972;Right=chr10:72057866-72058325
chr10	CG	SV	72057866	72058325	21	+	.	ID=2240;Type=complex;Left=chr10:62860591-62860972;Right=chr10:72057866-72058325
chr10	CG	SV	63508026	63508237	18	.	.	ID=3545;Type=probable-inversion;Left=chr10:63508026-63508440+;Right=chr10:63508084-63508237-;Distance=211;DiscordantMatePairAlignments=18;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_032199:+;RightGenes=NM_032199:+;XRef=;Frequency=0.00
chr10	CG	SV	63508026	63508440	18	+	.	ID=3545;Type=probable-inversion;Left=chr10:63508026-63508440;Right=chr10:63508084-63508237
chr10	CG	SV	63508084	63508237	18	+	.	ID=3545;Type=probable-inversion;Left=chr10:63508026-63508440;Right=chr10:63508084-63508237
chr10	CG	SV	77925584	77931424	25	.	.	ID=2238;Type=deletion;Left=chr10:77925584-77925861+;Right=chr10:77931031-77931424+;Distance=5447;DiscordantMatePairAlignments=25;LeftRepeat=L1MD:LINE:L1;Self chain;RightRepeat=L1PA16:LINE:L1;Self chain;LeftGenes=NM_032024:+;RightGenes=NM_032024:+;XRef=;Frequency=1.00
chr10	CG	SV	77925584	77925861	25	+	.	ID=2238;Type=deletion;Left=chr10:77925584-77925861;Right=chr10:77931031-77931424
chr10	CG	SV	77931031	77931424	25	+	.	ID=2238;Type=deletion;Left=chr10:77925584-77925861;Right=chr10:77931031-77931424
chr10	CG	SV	78016610	78022056	39	.	.	ID=2237;Type=deletion;Left=chr10:78016610-78017118+;Right=chr10:78021598-78022056+;Distance=4988;DiscordantMatePairAlignments=39;LeftRepeat=L1HS:LINE:L1;L1M5:LINE:L1;Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs72504420 (chr10:78016610-78021598);Frequency=0.53
chr10	CG	SV	78016610	78017118	39	+	.	ID=2237;Type=deletion;Left=chr10:78016610-78017118;Right=chr10:78021598-78022056
chr10	CG	SV	78021598	78022056	39	+	.	ID=2237;Type=deletion;Left=chr10:78016610-78017118;Right=chr10:78021598-78022056
chr10	CG	SV	80762188	80763003	106	.	.	ID=2235;Type=deletion;Left=chr10:80762188-80762617+;Right=chr10:80762786-80763003+;Distance=598;DiscordantMatePairAlignments=106;LeftRepeat=Self chain;RightRepeat=L1ME3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr10	CG	SV	80762188	80762617	106	+	.	ID=2235;Type=deletion;Left=chr10:80762188-80762617;Right=chr10:80762786-80763003
chr10	CG	SV	80762786	80763003	106	+	.	ID=2235;Type=deletion;Left=chr10:80762188-80762617;Right=chr10:80762786-80763003
chr10	CG	SV	82727731	82728366	12	.	.	ID=2234;Type=deletion;Left=chr10:82727731-82728157+;Right=chr10:82728050-82728366+;Distance=319;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72199353 (chr10:82727717-82728036);Frequency=0.35
chr10	CG	SV	82727731	82728157	12	+	.	ID=2234;Type=deletion;Left=chr10:82727731-82728157;Right=chr10:82728050-82728366
chr10	CG	SV	82728050	82728366	12	+	.	ID=2234;Type=deletion;Left=chr10:82727731-82728157;Right=chr10:82728050-82728366
chr10	CG	SV	84227964	84228864	138	.	.	ID=2233;Type=deletion;Left=chr10:84227964-84228509+;Right=chr10:84228457-84228864+;Distance=493;DiscordantMatePairAlignments=138;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;RightGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;XRef=rs67681028 (chr10:84227969-84228462);Frequency=0.82
chr10	CG	SV	84227964	84228509	138	+	.	ID=2233;Type=deletion;Left=chr10:84227964-84228509;Right=chr10:84228457-84228864
chr10	CG	SV	84228457	84228864	138	+	.	ID=2233;Type=deletion;Left=chr10:84227964-84228509;Right=chr10:84228457-84228864
chr10	CG	SV	84422076	84623892	27	.	.	ID=2232;Type=deletion;Left=chr10:84422076-84422433+;Right=chr10:84623549-84623892+;Distance=201473;DiscordantMatePairAlignments=27;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=Self chain;LeftGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;RightGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;XRef=;Frequency=0.00
chr10	CG	SV	84422076	84422433	27	+	.	ID=2232;Type=deletion;Left=chr10:84422076-84422433;Right=chr10:84623549-84623892
chr10	CG	SV	84623549	84623892	27	+	.	ID=2232;Type=deletion;Left=chr10:84422076-84422433;Right=chr10:84623549-84623892
chr10	CG	SV	84424587	84631678	52	.	.	ID=3541;Type=probable-inversion;Left=chr10:84424587-84424971+;Right=chr10:84631294-84631678-;Distance=207091;DiscordantMatePairAlignments=52;LeftRepeat=LTR8A:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;RightGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;XRef=;Frequency=0.00
chr10	CG	SV	84424587	84424971	52	+	.	ID=3541;Type=probable-inversion;Left=chr10:84424587-84424971;Right=chr10:84631294-84631678
chr10	CG	SV	84631294	84631678	52	+	.	ID=3541;Type=probable-inversion;Left=chr10:84424587-84424971;Right=chr10:84631294-84631678
chr10	CG	SV	89265777	89266710	16	.	.	ID=2231;Type=deletion;Left=chr10:89265777-89266176+;Right=chr10:89266548-89266710+;Distance=771;DiscordantMatePairAlignments=16;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_004897:+;RightGenes=NM_004897:+;XRef=;Frequency=0.71
chr10	CG	SV	89265777	89266176	16	+	.	ID=2231;Type=deletion;Left=chr10:89265777-89266176;Right=chr10:89266548-89266710
chr10	CG	SV	89266548	89266710	16	+	.	ID=2231;Type=deletion;Left=chr10:89265777-89266176;Right=chr10:89266548-89266710
chr10	CG	SV	94124579	94127820	28	.	.	ID=2229;Type=deletion;Left=chr10:94124579-94125018+;Right=chr10:94127633-94127820+;Distance=3054;DiscordantMatePairAlignments=28;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=rs66665405 (chr10:94124594-94127633);Frequency=1.00
chr10	CG	SV	94124579	94125018	28	+	.	ID=2229;Type=deletion;Left=chr10:94124579-94125018;Right=chr10:94127633-94127820
chr10	CG	SV	94127633	94127820	28	+	.	ID=2229;Type=deletion;Left=chr10:94124579-94125018;Right=chr10:94127633-94127820
chr10	CG	SV	95535467	95536989	56	.	.	ID=2228;Type=deletion;Left=chr10:95535467-95535807+;Right=chr10:95536485-95536989+;Distance=1018;DiscordantMatePairAlignments=56;LeftRepeat=L4:LINE:RTE;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=NM_005097:+;RightGenes=NM_005097:+;XRef=;Frequency=1.00
chr10	CG	SV	95535467	95535807	56	+	.	ID=2228;Type=deletion;Left=chr10:95535467-95535807;Right=chr10:95536485-95536989
chr10	CG	SV	95536485	95536989	56	+	.	ID=2228;Type=deletion;Left=chr10:95535467-95535807;Right=chr10:95536485-95536989
chr10	CG	SV	97196505	97198010	37	.	.	ID=855;Type=distal-duplication;Left=chr10:97196505-97196775-;Right=chr10:97197683-97198010-;Distance=1235;DiscordantMatePairAlignments=37;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_015385:-;NM_024991:-;RightGenes=NM_015385:-;NM_024991:-;XRef=;Frequency=0.76
chr10	CG	SV	97196505	97196775	37	-	.	ID=855;Type=distal-duplication;Left=chr10:97196505-97196775;Right=chr10:97197683-97198010
chr10	CG	SV	97197683	97198010	37	-	.	ID=855;Type=distal-duplication;Left=chr10:97196505-97196775;Right=chr10:97197683-97198010
chr10	CG	SV	97197045	97198430	44	.	.	ID=2227;Type=distal-duplication;Left=chr10:97197045-97197317+;Right=chr10:97198018-97198430+;Distance=973;DiscordantMatePairAlignments=44;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=NM_015385:-;NM_024991:-;RightGenes=NM_015385:-;NM_024991:-;XRef=rs71977870 (chr10:97197044-97198017);Frequency=0.76
chr10	CG	SV	97197045	97197317	44	+	.	ID=2227;Type=distal-duplication;Left=chr10:97197045-97197317;Right=chr10:97198018-97198430
chr10	CG	SV	97198018	97198430	44	+	.	ID=2227;Type=distal-duplication;Left=chr10:97197045-97197317;Right=chr10:97198018-97198430
chr10	CG	SV	99024859	99027774	216	.	.	ID=2226;Type=deletion;Left=chr10:99024859-99025405+;Right=chr10:99027393-99027774+;Distance=2534;DiscordantMatePairAlignments=216;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_032900:-;RightGenes=NM_032900:-;XRef=rs67953540 (chr10:99024853-99027387);Frequency=1.00
chr10	CG	SV	99024859	99025405	216	+	.	ID=2226;Type=deletion;Left=chr10:99024859-99025405;Right=chr10:99027393-99027774
chr10	CG	SV	99027393	99027774	216	+	.	ID=2226;Type=deletion;Left=chr10:99024859-99025405;Right=chr10:99027393-99027774
chr10	CG	SV	107242992	107243742	32	.	.	ID=2224;Type=deletion;Left=chr10:107242992-107243380+;Right=chr10:107243345-107243742+;Distance=353;DiscordantMatePairAlignments=32;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67319612 (chr10:107242992-107243345);Frequency=0.76
chr10	CG	SV	107242992	107243380	32	+	.	ID=2224;Type=deletion;Left=chr10:107242992-107243380;Right=chr10:107243345-107243742
chr10	CG	SV	107243345	107243742	32	+	.	ID=2224;Type=deletion;Left=chr10:107242992-107243380;Right=chr10:107243345-107243742
chr10	CG	SV	107940674	107942019	144	.	.	ID=2223;Type=deletion;Left=chr10:107940674-107941103+;Right=chr10:107941587-107942019+;Distance=913;DiscordantMatePairAlignments=144;LeftRepeat=MER5A1:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67619770 (chr10:107940674-107941587);Frequency=0.94
chr10	CG	SV	107940674	107941103	144	+	.	ID=2223;Type=deletion;Left=chr10:107940674-107941103;Right=chr10:107941587-107942019
chr10	CG	SV	107941587	107942019	144	+	.	ID=2223;Type=deletion;Left=chr10:107940674-107941103;Right=chr10:107941587-107942019
chr10	CG	SV	108020311	108022991	68	.	.	ID=2222;Type=deletion;Left=chr10:108020311-108020777+;Right=chr10:108022535-108022991+;Distance=2224;DiscordantMatePairAlignments=68;LeftRepeat=MER52-int:LTR:ERV1;RightRepeat=MER52-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr10	CG	SV	108020311	108020777	68	+	.	ID=2222;Type=deletion;Left=chr10:108020311-108020777;Right=chr10:108022535-108022991
chr10	CG	SV	108022535	108022991	68	+	.	ID=2222;Type=deletion;Left=chr10:108020311-108020777;Right=chr10:108022535-108022991
chr10	CG	SV	111026384	111027143	10	.	.	ID=2221;Type=deletion;Left=chr10:111026384-111026774+;Right=chr10:111026704-111027143+;Distance=320;DiscordantMatePairAlignments=10;LeftRepeat=AluYg6:SINE:Alu;Self chain;RightRepeat=L3:LINE:CR1;Self chain;LeftGenes=;RightGenes=;XRef=rs6144084 (chr10:111026367-111026687);Frequency=0.76
chr10	CG	SV	111026384	111026774	10	+	.	ID=2221;Type=deletion;Left=chr10:111026384-111026774;Right=chr10:111026704-111027143
chr10	CG	SV	111026704	111027143	10	+	.	ID=2221;Type=deletion;Left=chr10:111026384-111026774;Right=chr10:111026704-111027143
chr10	CG	SV	111562114	111568656	67	.	.	ID=2220;Type=deletion;Left=chr10:111562114-111562444+;Right=chr10:111568220-111568656+;Distance=6106;DiscordantMatePairAlignments=67;LeftRepeat=L1HS:LINE:L1;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67550364 (chr10:111562114-111568220);Frequency=1.00
chr10	CG	SV	111562114	111562444	67	+	.	ID=2220;Type=deletion;Left=chr10:111562114-111562444;Right=chr10:111568220-111568656
chr10	CG	SV	111568220	111568656	67	+	.	ID=2220;Type=deletion;Left=chr10:111562114-111562444;Right=chr10:111568220-111568656
chr10	CG	SV	114102173	114107049	108	.	.	ID=2219;Type=deletion;Left=chr10:114102173-114102635+;Right=chr10:114106650-114107049+;Distance=4477;DiscordantMatePairAlignments=108;LeftRepeat=AluSx:SINE:Alu;RightRepeat=MIRm:SINE:MIR;LeftGenes=NR_028134:-;RightGenes=;XRef=rs68033286 (chr10:114102171-114106648);Frequency=0.88
chr10	CG	SV	114102173	114102635	108	+	.	ID=2219;Type=deletion;Left=chr10:114102173-114102635;Right=chr10:114106650-114107049
chr10	CG	SV	114106650	114107049	108	+	.	ID=2219;Type=deletion;Left=chr10:114102173-114102635;Right=chr10:114106650-114107049
chr10	CG	SV	114147779	114148627	12	.	.	ID=2218;Type=deletion;Left=chr10:114147779-114148254+;Right=chr10:114148117-114148627+;Distance=338;DiscordantMatePairAlignments=12;LeftRepeat=L1ME4a:LINE:L1;RightRepeat=;LeftGenes=NM_016234:+;NM_203379:+;NM_203380:+;RightGenes=NM_016234:+;NM_203379:+;NM_203380:+;XRef=rs67206921 (chr10:114147774-114148112);Frequency=1.00
chr10	CG	SV	114147779	114148254	12	+	.	ID=2218;Type=deletion;Left=chr10:114147779-114148254;Right=chr10:114148117-114148627
chr10	CG	SV	114148117	114148627	12	+	.	ID=2218;Type=deletion;Left=chr10:114147779-114148254;Right=chr10:114148117-114148627
chr10	CG	SV	119624273	119625065	27	.	.	ID=2217;Type=deletion;Left=chr10:119624273-119624715+;Right=chr10:119624604-119625065+;Distance=331;DiscordantMatePairAlignments=27;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71389988 (chr10:119624273-119624604);Frequency=1.00
chr10	CG	SV	119624273	119624715	27	+	.	ID=2217;Type=deletion;Left=chr10:119624273-119624715;Right=chr10:119624604-119625065
chr10	CG	SV	119624604	119625065	27	+	.	ID=2217;Type=deletion;Left=chr10:119624273-119624715;Right=chr10:119624604-119625065
chr10	CG	SV	122216887	122219161	24	.	.	ID=2216;Type=deletion;Left=chr10:122216887-122217377+;Right=chr10:122219024-122219161+;Distance=2137;DiscordantMatePairAlignments=24;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_001030059:+;RightGenes=NM_001030059:+;XRef=rs66889305 (chr10:122216588-122218737);Frequency=1.00
chr10	CG	SV	122216887	122217377	24	+	.	ID=2216;Type=deletion;Left=chr10:122216887-122217377;Right=chr10:122219024-122219161
chr10	CG	SV	122219024	122219161	24	+	.	ID=2216;Type=deletion;Left=chr10:122216887-122217377;Right=chr10:122219024-122219161
chr10	CG	SV	127180263	127181175	29	.	.	ID=223;Type=complex;Left=chr10:127180263-127180407-;Right=chr10:127180684-127181175+;Distance=277;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr10	CG	SV	127180263	127180407	29	-	.	ID=223;Type=complex;Left=chr10:127180263-127180407;Right=chr10:127180684-127181175
chr10	CG	SV	127180684	127181175	29	-	.	ID=223;Type=complex;Left=chr10:127180263-127180407;Right=chr10:127180684-127181175
chr10	CG	SV	127180671	127187209	88	.	.	ID=3540;Type=complex;Left=chr10:127180671-127180937+;Right=chr10:127186714-127187209-;Distance=6538;DiscordantMatePairAlignments=88;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr10	CG	SV	127180671	127180937	88	+	.	ID=3540;Type=complex;Left=chr10:127180671-127180937;Right=chr10:127186714-127187209
chr10	CG	SV	127186714	127187209	88	+	.	ID=3540;Type=complex;Left=chr10:127180671-127180937;Right=chr10:127186714-127187209
chr10	CG	SV	127181647	127187541	22	.	.	ID=2214;Type=complex;Left=chr10:127181647-127182024+;Right=chr10:127187226-127187541+;Distance=5579;DiscordantMatePairAlignments=22;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66681237 (chr10:127181645-127187224);Frequency=0.82
chr10	CG	SV	127181647	127182024	22	+	.	ID=2214;Type=complex;Left=chr10:127181647-127182024;Right=chr10:127187226-127187541
chr10	CG	SV	127187226	127187541	22	+	.	ID=2214;Type=complex;Left=chr10:127181647-127182024;Right=chr10:127187226-127187541
chr10	CG	SV	127585054	127597573	26	.	.	ID=222;Type=probable-inversion;Left=chr10:127585054-127585503-;Right=chr10:127597370-127597573+;Distance=11867;DiscordantMatePairAlignments=26;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_145235:+;RightGenes=NM_145235:+;XRef=;Frequency=0.59
chr10	CG	SV	127585054	127585503	26	-	.	ID=222;Type=probable-inversion;Left=chr10:127585054-127585503;Right=chr10:127597370-127597573
chr10	CG	SV	127597370	127597573	26	-	.	ID=222;Type=probable-inversion;Left=chr10:127585054-127585503;Right=chr10:127597370-127597573
chr10	CG	SV	127735185	127736413	116	.	.	ID=2212;Type=deletion;Left=chr10:127735185-127735687+;Right=chr10:127735985-127736413+;Distance=800;DiscordantMatePairAlignments=116;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_003474:-;NM_021641:-;RightGenes=NM_003474:-;NM_021641:-;XRef=rs67650775 (chr10:127735174-127735974);Frequency=0.94
chr10	CG	SV	127735185	127735687	116	+	.	ID=2212;Type=deletion;Left=chr10:127735185-127735687;Right=chr10:127735985-127736413
chr10	CG	SV	127735985	127736413	116	+	.	ID=2212;Type=deletion;Left=chr10:127735185-127735687;Right=chr10:127735985-127736413
chr10	CG	SV	131485170	131485843	10	.	.	ID=2210;Type=deletion;Left=chr10:131485170-131485633+;Right=chr10:131485466-131485843+;Distance=296;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr10	CG	SV	131485170	131485633	10	+	.	ID=2210;Type=deletion;Left=chr10:131485170-131485633;Right=chr10:131485466-131485843
chr10	CG	SV	131485466	131485843	10	+	.	ID=2210;Type=deletion;Left=chr10:131485170-131485633;Right=chr10:131485466-131485843
chr10	CG	SV	132048565	132049215	33	.	.	ID=2209;Type=deletion;Left=chr10:132048565-132048941+;Right=chr10:132048965-132049215+;Distance=400;DiscordantMatePairAlignments=33;LeftRepeat=(TC)n:Simple_repeat:Simple_repeat;Tandem CTCTCT;Tandem period 10;Tandem period 14;Tandem period 8;RightRepeat=(TC)n:Simple_repeat:Simple_repeat;Tandem CTCTCT;Tandem period 10;Tandem period 14;LeftGenes=;RightGenes=;XRef=rs33996726 (chr10:132048415-132048801);Frequency=1.00
chr10	CG	SV	132048565	132048941	33	+	.	ID=2209;Type=deletion;Left=chr10:132048565-132048941;Right=chr10:132048965-132049215
chr10	CG	SV	132048965	132049215	33	+	.	ID=2209;Type=deletion;Left=chr10:132048565-132048941;Right=chr10:132048965-132049215
chr10	CG	SV	132147762	132148496	23	.	.	ID=2208;Type=deletion;Left=chr10:132147762-132148093+;Right=chr10:132148332-132148496+;Distance=570;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;Tandem period 26;RightRepeat=Self chain;Tandem period 26;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr10	CG	SV	132147762	132148093	23	+	.	ID=2208;Type=deletion;Left=chr10:132147762-132148093;Right=chr10:132148332-132148496
chr10	CG	SV	132148332	132148496	23	+	.	ID=2208;Type=deletion;Left=chr10:132147762-132148093;Right=chr10:132148332-132148496
chr10	CG	SV	132748477	132749216	20	.	.	ID=2207;Type=deletion;Left=chr10:132748477-132748903+;Right=chr10:132748826-132749216+;Distance=349;DiscordantMatePairAlignments=20;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67563509 (chr10:132748461-132748810);Frequency=0.76
chr10	CG	SV	132748477	132748903	20	+	.	ID=2207;Type=deletion;Left=chr10:132748477-132748903;Right=chr10:132748826-132749216
chr10	CG	SV	132748826	132749216	20	+	.	ID=2207;Type=deletion;Left=chr10:132748477-132748903;Right=chr10:132748826-132749216
chr10	CG	SV	133501919	133502333	16	.	.	ID=854;Type=tandem-duplication;Left=chr10:133501919-133502116-;Right=chr10:133502114-133502333-;Distance=217;DiscordantMatePairAlignments=16;LeftRepeat=L1MD2:LINE:L1;Self chain;Tandem period 60;RightRepeat=L1MD2:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr10	CG	SV	133501919	133502116	16	-	.	ID=854;Type=tandem-duplication;Left=chr10:133501919-133502116;Right=chr10:133502114-133502333
chr10	CG	SV	133502114	133502333	16	-	.	ID=854;Type=tandem-duplication;Left=chr10:133501919-133502116;Right=chr10:133502114-133502333
chr10	CG	SV	134577608	134578725	87	.	.	ID=2206;Type=deletion;Left=chr10:134577608-134578014+;Right=chr10:134578334-134578725+;Distance=726;DiscordantMatePairAlignments=87;LeftRepeat=Self chain;Tandem period 33;RightRepeat=Self chain;Tandem period 33;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr10	CG	SV	134577608	134578014	87	+	.	ID=2206;Type=deletion;Left=chr10:134577608-134578014;Right=chr10:134578334-134578725
chr10	CG	SV	134578334	134578725	87	+	.	ID=2206;Type=deletion;Left=chr10:134577608-134578014;Right=chr10:134578334-134578725
chr10	CG	SV	134954794	134956433	173	.	.	ID=2205;Type=deletion;Left=chr10:134954794-134955218+;Right=chr10:134955985-134956433+;Distance=1191;DiscordantMatePairAlignments=173;LeftRepeat=Self chain;Tandem period 188;Tandem period 94;RightRepeat=Self chain;LeftGenes=NM_006659:-;RightGenes=NM_006659:-;XRef=rs72187097 (chr10:134954841-134955956);Frequency=0.88
chr10	CG	SV	134954794	134955218	173	+	.	ID=2205;Type=deletion;Left=chr10:134954794-134955218;Right=chr10:134955985-134956433
chr10	CG	SV	134955985	134956433	173	+	.	ID=2205;Type=deletion;Left=chr10:134954794-134955218;Right=chr10:134955985-134956433
chr10	CG	SV	135348971	135349718	10	-	.	ID=152;Type=interchromosomal;Left=chr10:135348971-135349718-;Right=chr18:101377-101644+;Distance=;DiscordantMatePairAlignments=10;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 137;Tandem period 68;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	101377	101644	10	-	.	ID=152;Type=interchromosomal;Left=chr10:135348971-135349718-;Right=chr18:101377-101644+;Distance=;DiscordantMatePairAlignments=10;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 137;Tandem period 68;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	1619425	1620488	78	.	.	ID=2200;Type=deletion;Left=chr11:1619425-1619744+;Right=chr11:1620025-1620488+;Distance=600;DiscordantMatePairAlignments=78;LeftRepeat=(CACCC)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 16;Tandem period 31;RightRepeat=(CACCC)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 16;Tandem period 31;LeftGenes=NM_053005:-;RightGenes=NM_053005:-;XRef=;Frequency=0.94
chr11	CG	SV	1619425	1619744	78	+	.	ID=2200;Type=deletion;Left=chr11:1619425-1619744;Right=chr11:1620025-1620488
chr11	CG	SV	1620025	1620488	78	+	.	ID=2200;Type=deletion;Left=chr11:1619425-1619744;Right=chr11:1620025-1620488
chr11	CG	SV	1871832	1893969	70	.	.	ID=2199;Type=deletion;Left=chr11:1871832-1872273+;Right=chr11:1893531-1893969+;Distance=21699;DiscordantMatePairAlignments=70;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	1871832	1872273	70	+	.	ID=2199;Type=deletion;Left=chr11:1871832-1872273;Right=chr11:1893531-1893969
chr11	CG	SV	1893531	1893969	70	+	.	ID=2199;Type=deletion;Left=chr11:1871832-1872273;Right=chr11:1893531-1893969
chr11	CG	SV	5716663	5719351	28	.	.	ID=2195;Type=deletion;Left=chr11:5716663-5717053+;Right=chr11:5718941-5719351+;Distance=2278;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr11	CG	SV	5716663	5717053	28	+	.	ID=2195;Type=deletion;Left=chr11:5716663-5717053;Right=chr11:5718941-5719351
chr11	CG	SV	5718941	5719351	28	+	.	ID=2195;Type=deletion;Left=chr11:5716663-5717053;Right=chr11:5718941-5719351
chr11	CG	SV	5741151	5766236	28	.	.	ID=2194;Type=deletion;Left=chr11:5741151-5741482+;Right=chr11:5765860-5766236+;Distance=24709;DiscordantMatePairAlignments=28;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001001913:-;XRef=;Frequency=0.47
chr11	CG	SV	5741151	5741482	28	+	.	ID=2194;Type=deletion;Left=chr11:5741151-5741482;Right=chr11:5765860-5766236
chr11	CG	SV	5765860	5766236	28	+	.	ID=2194;Type=deletion;Left=chr11:5741151-5741482;Right=chr11:5765860-5766236
chr11	CG	SV	7673491	7674198	25	.	.	ID=2192;Type=deletion;Left=chr11:7673491-7673973+;Right=chr11:7673807-7674198+;Distance=316;DiscordantMatePairAlignments=25;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_198185:-;RightGenes=NM_198185:-;XRef=rs6144199 (chr11:7673479-7673795);Frequency=1.00
chr11	CG	SV	7673491	7673973	25	+	.	ID=2192;Type=deletion;Left=chr11:7673491-7673973;Right=chr11:7673807-7674198
chr11	CG	SV	7673807	7674198	25	+	.	ID=2192;Type=deletion;Left=chr11:7673491-7673973;Right=chr11:7673807-7674198
chr11	CG	SV	12109134	12109846	12	.	.	ID=2189;Type=deletion;Left=chr11:12109134-12109624+;Right=chr11:12109458-12109846+;Distance=324;DiscordantMatePairAlignments=12;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_014632:+;RightGenes=NM_014632:+;XRef=rs66607256 (chr11:12109120-12109444);Frequency=0.88
chr11	CG	SV	12109134	12109624	12	+	.	ID=2189;Type=deletion;Left=chr11:12109134-12109624;Right=chr11:12109458-12109846
chr11	CG	SV	12109458	12109846	12	+	.	ID=2189;Type=deletion;Left=chr11:12109134-12109624;Right=chr11:12109458-12109846
chr11	CG	SV	16952754	16953644	26	.	.	ID=2186;Type=deletion;Left=chr11:16952754-16953230+;Right=chr11:16953178-16953644+;Distance=424;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;RightRepeat=L1MD2:LINE:L1;Self chain;LeftGenes=NM_175058:-;RightGenes=NM_175058:-;XRef=rs72068241 (chr11:16952745-16953169);Frequency=0.88
chr11	CG	SV	16952754	16953230	26	+	.	ID=2186;Type=deletion;Left=chr11:16952754-16953230;Right=chr11:16953178-16953644
chr11	CG	SV	16953178	16953644	26	+	.	ID=2186;Type=deletion;Left=chr11:16952754-16953230;Right=chr11:16953178-16953644
chr11	CG	SV	19708432	19714623	58	.	.	ID=2185;Type=deletion;Left=chr11:19708432-19708865+;Right=chr11:19714181-19714623+;Distance=5749;DiscordantMatePairAlignments=58;LeftRepeat=;RightRepeat=;LeftGenes=NM_001111018:+;NM_145117:+;NM_182964:+;RightGenes=NM_001111018:+;NM_145117:+;NM_182964:+;XRef=;Frequency=0.00
chr11	CG	SV	19708432	19708865	58	+	.	ID=2185;Type=deletion;Left=chr11:19708432-19708865;Right=chr11:19714181-19714623
chr11	CG	SV	19714181	19714623	58	+	.	ID=2185;Type=deletion;Left=chr11:19708432-19708865;Right=chr11:19714181-19714623
chr11	CG	SV	20801133	20806925	68	.	.	ID=2184;Type=deletion;Left=chr11:20801133-20801567+;Right=chr11:20806526-20806925+;Distance=5393;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=;LeftGenes=NM_006157:+;NM_201551:+;RightGenes=NM_006157:+;NM_201551:+;XRef=;Frequency=0.20
chr11	CG	SV	20801133	20801567	68	+	.	ID=2184;Type=deletion;Left=chr11:20801133-20801567;Right=chr11:20806526-20806925
chr11	CG	SV	20806526	20806925	68	+	.	ID=2184;Type=deletion;Left=chr11:20801133-20801567;Right=chr11:20806526-20806925
chr11	CG	SV	24399729	24409214	64	.	.	ID=2183;Type=deletion;Left=chr11:24399729-24400088+;Right=chr11:24408863-24409214+;Distance=9134;DiscordantMatePairAlignments=64;LeftRepeat=;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr11	CG	SV	24399729	24400088	64	+	.	ID=2183;Type=deletion;Left=chr11:24399729-24400088;Right=chr11:24408863-24409214
chr11	CG	SV	24408863	24409214	64	+	.	ID=2183;Type=deletion;Left=chr11:24399729-24400088;Right=chr11:24408863-24409214
chr11	CG	SV	27613839	27614437	17	.	.	ID=2180;Type=deletion;Left=chr11:27613839-27614223+;Right=chr11:27614171-27614437+;Distance=332;DiscordantMatePairAlignments=17;LeftRepeat=MER61E:LTR:ERV1;RightRepeat=MER61E:LTR:ERV1;LeftGenes=NR_002832:+;RightGenes=NR_002832:+;XRef=rs10525413 (chr11:27613839-27614171);Frequency=0.88
chr11	CG	SV	27613839	27614223	17	+	.	ID=2180;Type=deletion;Left=chr11:27613839-27614223;Right=chr11:27614171-27614437
chr11	CG	SV	27614171	27614437	17	+	.	ID=2180;Type=deletion;Left=chr11:27613839-27614223;Right=chr11:27614171-27614437
chr11	CG	SV	29924155	29925336	30	.	.	ID=2178;Type=deletion;Left=chr11:29924155-29924514+;Right=chr11:29925043-29925336+;Distance=888;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72176999 (chr11:29924154-29925042);Frequency=0.71
chr11	CG	SV	29924155	29924514	30	+	.	ID=2178;Type=deletion;Left=chr11:29924155-29924514;Right=chr11:29925043-29925336
chr11	CG	SV	29925043	29925336	30	+	.	ID=2178;Type=deletion;Left=chr11:29924155-29924514;Right=chr11:29925043-29925336
chr11	CG	SV	30392887	30410818	34	.	.	ID=839;Type=tandem-duplication;Left=chr11:30392887-30393285-;Right=chr11:30410536-30410818-;Distance=17533;DiscordantMatePairAlignments=34;LeftRepeat=;RightRepeat=;LeftGenes=NM_001145399:-;NM_001584:-;RightGenes=NM_001145399:-;NM_001584:-;XRef=;Frequency=0.00
chr11	CG	SV	30392887	30393285	34	-	.	ID=839;Type=tandem-duplication;Left=chr11:30392887-30393285;Right=chr11:30410536-30410818
chr11	CG	SV	30410536	30410818	34	-	.	ID=839;Type=tandem-duplication;Left=chr11:30392887-30393285;Right=chr11:30410536-30410818
chr11	CG	SV	33494263	33494987	37	.	.	ID=2175;Type=deletion;Left=chr11:33494263-33494772+;Right=chr11:33494603-33494987+;Distance=340;DiscordantMatePairAlignments=37;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71980770 (chr11:33494248-33494571);Frequency=0.71
chr11	CG	SV	33494263	33494772	37	+	.	ID=2175;Type=deletion;Left=chr11:33494263-33494772;Right=chr11:33494603-33494987
chr11	CG	SV	33494603	33494987	37	+	.	ID=2175;Type=deletion;Left=chr11:33494263-33494772;Right=chr11:33494603-33494987
chr11	CG	SV	34684699	34685581	31	.	.	ID=2174;Type=deletion;Left=chr11:34684699-34685036+;Right=chr11:34685194-34685581+;Distance=495;DiscordantMatePairAlignments=31;LeftRepeat=L1MA2:LINE:L1;RightRepeat=L1MA2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr11	CG	SV	34684699	34685036	31	+	.	ID=2174;Type=deletion;Left=chr11:34684699-34685036;Right=chr11:34685194-34685581
chr11	CG	SV	34685194	34685581	31	+	.	ID=2174;Type=deletion;Left=chr11:34684699-34685036;Right=chr11:34685194-34685581
chr11	CG	SV	41118262	41123950	43	.	.	ID=219;Type=probable-inversion;Left=chr11:41118262-41118565-;Right=chr11:41123618-41123950+;Distance=5053;DiscordantMatePairAlignments=43;LeftRepeat=MER92B:LTR:ERV1;Self chain;RightRepeat=MER58A:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.25
chr11	CG	SV	41118262	41118565	43	-	.	ID=219;Type=probable-inversion;Left=chr11:41118262-41118565;Right=chr11:41123618-41123950
chr11	CG	SV	41123618	41123950	43	-	.	ID=219;Type=probable-inversion;Left=chr11:41118262-41118565;Right=chr11:41123618-41123950
chr11	CG	SV	42420682	42421459	12	.	.	ID=2169;Type=deletion;Left=chr11:42420682-42421033+;Right=chr11:42420993-42421459+;Distance=311;DiscordantMatePairAlignments=12;LeftRepeat=AluYb9:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67195109 (chr11:42420682-42420993);Frequency=0.94
chr11	CG	SV	42420682	42421033	12	+	.	ID=2169;Type=deletion;Left=chr11:42420682-42421033;Right=chr11:42420993-42421459
chr11	CG	SV	42420993	42421459	12	+	.	ID=2169;Type=deletion;Left=chr11:42420682-42421033;Right=chr11:42420993-42421459
chr11	CG	SV	43848420	43849334	23	.	.	ID=2168;Type=deletion;Left=chr11:43848420-43848831+;Right=chr11:43848756-43849334+;Distance=336;DiscordantMatePairAlignments=23;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs10525689 (chr11:43848420-43848756);Frequency=1.00
chr11	CG	SV	43848420	43848831	23	+	.	ID=2168;Type=deletion;Left=chr11:43848420-43848831;Right=chr11:43848756-43849334
chr11	CG	SV	43848756	43849334	23	+	.	ID=2168;Type=deletion;Left=chr11:43848420-43848831;Right=chr11:43848756-43849334
chr11	CG	SV	45386425	45388659	95	.	.	ID=2167;Type=deletion;Left=chr11:45386425-45386841+;Right=chr11:45388192-45388659+;Distance=1767;DiscordantMatePairAlignments=95;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66503754 (chr11:45386425-45388192);Frequency=0.94
chr11	CG	SV	45386425	45386841	95	+	.	ID=2167;Type=deletion;Left=chr11:45386425-45386841;Right=chr11:45388192-45388659
chr11	CG	SV	45388192	45388659	95	+	.	ID=2167;Type=deletion;Left=chr11:45386425-45386841;Right=chr11:45388192-45388659
chr11	CG	SV	47844243	47845195	50	.	.	ID=2165;Type=deletion;Left=chr11:47844243-47844640+;Right=chr11:47844770-47845195+;Distance=527;DiscordantMatePairAlignments=50;LeftRepeat=AluSp:SINE:Alu;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr11	CG	SV	47844243	47844640	50	+	.	ID=2165;Type=deletion;Left=chr11:47844243-47844640;Right=chr11:47844770-47845195
chr11	CG	SV	47844770	47845195	50	+	.	ID=2165;Type=deletion;Left=chr11:47844243-47844640;Right=chr11:47844770-47845195
chr11	CG	SV	48076647	48077286	22	.	.	ID=2164;Type=deletion;Left=chr11:48076647-48077143+;Right=chr11:48076956-48077286+;Distance=309;DiscordantMatePairAlignments=22;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=;LeftGenes=NM_001098503:+;NM_002843:+;RightGenes=NM_001098503:+;NM_002843:+;XRef=rs72286428 (chr11:48076637-48076946);Frequency=0.94
chr11	CG	SV	48076647	48077143	22	+	.	ID=2164;Type=deletion;Left=chr11:48076647-48077143;Right=chr11:48076956-48077286
chr11	CG	SV	48076956	48077286	22	+	.	ID=2164;Type=deletion;Left=chr11:48076647-48077143;Right=chr11:48076956-48077286
chr11	CG	SV	48324095	48330692	69	.	.	ID=2162;Type=deletion;Left=chr11:48324095-48324610+;Right=chr11:48330276-48330692+;Distance=6181;DiscordantMatePairAlignments=69;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001005513:-;RightGenes=NM_001005513:-;XRef=rs71787435 (chr11:48324104-48330285);Frequency=1.00
chr11	CG	SV	48324095	48324610	69	+	.	ID=2162;Type=deletion;Left=chr11:48324095-48324610;Right=chr11:48330276-48330692
chr11	CG	SV	48330276	48330692	69	+	.	ID=2162;Type=deletion;Left=chr11:48324095-48324610;Right=chr11:48330276-48330692
chr11	CG	SV	57723924	78046672	32	.	.	ID=3531;Type=probable-inversion;Left=chr11:57723924-57724367+;Right=chr11:78046502-78046672-;Distance=20322748;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001098816:-;XRef=;Frequency=0.65
chr11	CG	SV	57723924	57724367	32	+	.	ID=3531;Type=probable-inversion;Left=chr11:57723924-57724367;Right=chr11:78046502-78046672
chr11	CG	SV	78046502	78046672	32	+	.	ID=3531;Type=probable-inversion;Left=chr11:57723924-57724367;Right=chr11:78046502-78046672
chr11	CG	SV	57923562	57925155	82	.	.	ID=2152;Type=deletion;Left=chr11:57923562-57923973+;Right=chr11:57924730-57925155+;Distance=1168;DiscordantMatePairAlignments=82;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72147631 (chr11:57923575-57924743);Frequency=0.71
chr11	CG	SV	57923562	57923973	82	+	.	ID=2152;Type=deletion;Left=chr11:57923562-57923973;Right=chr11:57924730-57925155
chr11	CG	SV	57924730	57925155	82	+	.	ID=2152;Type=deletion;Left=chr11:57923562-57923973;Right=chr11:57924730-57925155
chr11	CG	SV	58350764	58352945	19	.	.	ID=2151;Type=deletion;Left=chr11:58350764-58351096+;Right=chr11:58352595-58352945+;Distance=1831;DiscordantMatePairAlignments=19;LeftRepeat=MER4A1-int:LTR:ERV1;Self chain;RightRepeat=MER4A1:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr11	CG	SV	58350764	58351096	19	+	.	ID=2151;Type=deletion;Left=chr11:58350764-58351096;Right=chr11:58352595-58352945
chr11	CG	SV	58352595	58352945	19	+	.	ID=2151;Type=deletion;Left=chr11:58350764-58351096;Right=chr11:58352595-58352945
chr11	CG	SV	58388350	58393425	26	.	.	ID=2150;Type=deletion;Left=chr11:58388350-58388879+;Right=chr11:58393131-58393425+;Distance=4781;DiscordantMatePairAlignments=26;LeftRepeat=L1M2:LINE:L1;Self chain;RightRepeat=LOR1-int:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	58388350	58388879	26	+	.	ID=2150;Type=deletion;Left=chr11:58388350-58388879;Right=chr11:58393131-58393425
chr11	CG	SV	58393131	58393425	26	+	.	ID=2150;Type=deletion;Left=chr11:58388350-58388879;Right=chr11:58393131-58393425
chr11	CG	SV	60328185	60328941	78	.	.	ID=2148;Type=deletion;Left=chr11:60328185-60328618+;Right=chr11:60328672-60328941+;Distance=487;DiscordantMatePairAlignments=78;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr11	CG	SV	60328185	60328618	78	+	.	ID=2148;Type=deletion;Left=chr11:60328185-60328618;Right=chr11:60328672-60328941
chr11	CG	SV	60328672	60328941	78	+	.	ID=2148;Type=deletion;Left=chr11:60328185-60328618;Right=chr11:60328672-60328941
chr11	CG	SV	63455485	63458327	27	.	.	ID=2146;Type=deletion;Left=chr11:63455485-63455923+;Right=chr11:63458230-63458327+;Distance=2745;DiscordantMatePairAlignments=27;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs67483435 (chr11:63455485-63458230);Frequency=1.00
chr11	CG	SV	63455485	63455923	27	+	.	ID=2146;Type=deletion;Left=chr11:63455485-63455923;Right=chr11:63458230-63458327
chr11	CG	SV	63458230	63458327	27	+	.	ID=2146;Type=deletion;Left=chr11:63455485-63455923;Right=chr11:63458230-63458327
chr11	CG	SV	65775274	65776457	53	.	.	ID=3533;Type=complex;Left=chr11:65775274-65775603+;Right=chr11:65776024-65776457-;Distance=1183;DiscordantMatePairAlignments=53;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr11	CG	SV	65775274	65775603	53	+	.	ID=3533;Type=complex;Left=chr11:65775274-65775603;Right=chr11:65776024-65776457
chr11	CG	SV	65776024	65776457	53	+	.	ID=3533;Type=complex;Left=chr11:65775274-65775603;Right=chr11:65776024-65776457
chr11	CG	SV	65775157	65776828	13	.	.	ID=217;Type=complex;Left=chr11:65775157-65775568-;Right=chr11:65776578-65776828+;Distance=1010;DiscordantMatePairAlignments=13;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr11	CG	SV	65775157	65775568	13	-	.	ID=217;Type=complex;Left=chr11:65775157-65775568;Right=chr11:65776578-65776828
chr11	CG	SV	65776578	65776828	13	-	.	ID=217;Type=complex;Left=chr11:65775157-65775568;Right=chr11:65776578-65776828
chr11	CG	SV	68487946	68488223	22	.	.	ID=834;Type=tandem-duplication;Left=chr11:68487946-68488030-;Right=chr11:68488060-68488223-;Distance=193;DiscordantMatePairAlignments=22;LeftRepeat=MLT1K:LTR:MaLR;Self chain;Tandem period 33;Tandem period 99;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	68487946	68488030	22	-	.	ID=834;Type=tandem-duplication;Left=chr11:68487946-68488030;Right=chr11:68488060-68488223
chr11	CG	SV	68488060	68488223	22	-	.	ID=834;Type=tandem-duplication;Left=chr11:68487946-68488030;Right=chr11:68488060-68488223
chr11	CG	SV	69110024	69110886	48	.	.	ID=2143;Type=deletion;Left=chr11:69110024-69110301+;Right=chr11:69110586-69110886+;Distance=562;DiscordantMatePairAlignments=48;LeftRepeat=Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72437253 (chr11:69110024-69110586);Frequency=1.00
chr11	CG	SV	69110024	69110301	48	+	.	ID=2143;Type=deletion;Left=chr11:69110024-69110301;Right=chr11:69110586-69110886
chr11	CG	SV	69110586	69110886	48	+	.	ID=2143;Type=deletion;Left=chr11:69110024-69110301;Right=chr11:69110586-69110886
chr11	CG	SV	69367705	69368232	14	.	.	ID=2142;Type=deletion;Left=chr11:69367705-69368035+;Right=chr11:69368140-69368232+;Distance=435;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	69367705	69368035	14	+	.	ID=2142;Type=deletion;Left=chr11:69367705-69368035;Right=chr11:69368140-69368232
chr11	CG	SV	69368140	69368232	14	+	.	ID=2142;Type=deletion;Left=chr11:69367705-69368035;Right=chr11:69368140-69368232
chr11	CG	SV	69660203	69662515	38	.	.	ID=2141;Type=deletion;Left=chr11:69660203-69660501+;Right=chr11:69662138-69662515+;Distance=1935;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=NM_018043:+;NR_030691:+;RightGenes=NM_018043:+;NR_030691:+;XRef=;Frequency=0.06
chr11	CG	SV	69660203	69660501	38	+	.	ID=2141;Type=deletion;Left=chr11:69660203-69660501;Right=chr11:69662138-69662515
chr11	CG	SV	69662138	69662515	38	+	.	ID=2141;Type=deletion;Left=chr11:69660203-69660501;Right=chr11:69662138-69662515
chr11	CG	SV	70479149	70479319	16	.	.	ID=831;Type=tandem-duplication;Left=chr11:70479149-70479238-;Right=chr11:70479247-70479319-;Distance=81;DiscordantMatePairAlignments=16;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GT;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TG;LeftGenes=NM_012309:-;RightGenes=NM_012309:-;XRef=;Frequency=0.94
chr11	CG	SV	70479149	70479238	16	-	.	ID=831;Type=tandem-duplication;Left=chr11:70479149-70479238;Right=chr11:70479247-70479319
chr11	CG	SV	70479247	70479319	16	-	.	ID=831;Type=tandem-duplication;Left=chr11:70479149-70479238;Right=chr11:70479247-70479319
chr11	CG	SV	81534049	81541391	17	.	.	ID=2136;Type=deletion;Left=chr11:81534049-81534359+;Right=chr11:81540996-81541391+;Distance=6947;DiscordantMatePairAlignments=17;LeftRepeat=L1MCb:LINE:L1;Self chain;RightRepeat=L1ME1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr11	CG	SV	81534049	81534359	17	+	.	ID=2136;Type=deletion;Left=chr11:81534049-81534359;Right=chr11:81540996-81541391
chr11	CG	SV	81540996	81541391	17	+	.	ID=2136;Type=deletion;Left=chr11:81534049-81534359;Right=chr11:81540996-81541391
chr11	CG	SV	84129158	84258079	60	.	.	ID=829;Type=tandem-duplication;Left=chr11:84129158-84129465-;Right=chr11:84257675-84258079-;Distance=128614;DiscordantMatePairAlignments=60;LeftRepeat=L1M2c:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_001142699:-;NM_001364:-;RightGenes=NM_001142699:-;NM_001364:-;XRef=;Frequency=0.00
chr11	CG	SV	84129158	84129465	60	-	.	ID=829;Type=tandem-duplication;Left=chr11:84129158-84129465;Right=chr11:84257675-84258079
chr11	CG	SV	84257675	84258079	60	-	.	ID=829;Type=tandem-duplication;Left=chr11:84129158-84129465;Right=chr11:84257675-84258079
chr11	CG	SV	85963609	85964776	68	.	.	ID=2135;Type=deletion;Left=chr11:85963609-85964100+;Right=chr11:85964370-85964776+;Distance=761;DiscordantMatePairAlignments=68;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001014811:-;NM_001161586:-;NM_006680:-;RightGenes=NM_001014811:-;NM_001161586:-;NM_006680:-;XRef=rs71790699 (chr11:85963609-85964370);Frequency=0.18
chr11	CG	SV	85963609	85964100	68	+	.	ID=2135;Type=deletion;Left=chr11:85963609-85964100;Right=chr11:85964370-85964776
chr11	CG	SV	85964370	85964776	68	+	.	ID=2135;Type=deletion;Left=chr11:85963609-85964100;Right=chr11:85964370-85964776
chr11	CG	SV	89833356	89836080	74	.	.	ID=2133;Type=deletion;Left=chr11:89833356-89833707+;Right=chr11:89835647-89836080+;Distance=2291;DiscordantMatePairAlignments=74;LeftRepeat=;RightRepeat=L1MB1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr11	CG	SV	89833356	89833707	74	+	.	ID=2133;Type=deletion;Left=chr11:89833356-89833707;Right=chr11:89835647-89836080
chr11	CG	SV	89835647	89836080	74	+	.	ID=2133;Type=deletion;Left=chr11:89833356-89833707;Right=chr11:89835647-89836080
chr11	CG	SV	97753418	97754222	51	.	.	ID=2129;Type=deletion;Left=chr11:97753418-97753852+;Right=chr11:97753812-97754222+;Distance=394;DiscordantMatePairAlignments=51;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67075251 (chr11:97753418-97753812);Frequency=0.59
chr11	CG	SV	97753418	97753852	51	+	.	ID=2129;Type=deletion;Left=chr11:97753418-97753852;Right=chr11:97753812-97754222
chr11	CG	SV	97753812	97754222	51	+	.	ID=2129;Type=deletion;Left=chr11:97753418-97753852;Right=chr11:97753812-97754222
chr11	CG	SV	99195693	99196517	88	.	.	ID=3530;Type=probable-inversion;Left=chr11:99195693-99196112+;Right=chr11:99196142-99196517-;Distance=824;DiscordantMatePairAlignments=88;LeftRepeat=;RightRepeat=;LeftGenes=NM_014361:+;NM_175566:+;RightGenes=NM_014361:+;NM_175566:+;XRef=;Frequency=1.00
chr11	CG	SV	99195693	99196112	88	+	.	ID=3530;Type=probable-inversion;Left=chr11:99195693-99196112;Right=chr11:99196142-99196517
chr11	CG	SV	99196142	99196517	88	+	.	ID=3530;Type=probable-inversion;Left=chr11:99195693-99196112;Right=chr11:99196142-99196517
chr11	CG	SV	102916041	102916762	13	.	.	ID=2125;Type=deletion;Left=chr11:102916041-102916457+;Right=chr11:102916354-102916762+;Distance=313;DiscordantMatePairAlignments=13;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10530049 (chr11:102916031-102916344);Frequency=1.00
chr11	CG	SV	102916041	102916457	13	+	.	ID=2125;Type=deletion;Left=chr11:102916041-102916457;Right=chr11:102916354-102916762
chr11	CG	SV	102916354	102916762	13	+	.	ID=2125;Type=deletion;Left=chr11:102916041-102916457;Right=chr11:102916354-102916762
chr11	CG	SV	103515693	103516404	28	.	.	ID=2124;Type=deletion;Left=chr11:103515693-103516194+;Right=chr11:103516037-103516404+;Distance=344;DiscordantMatePairAlignments=28;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_025208:-;NM_033135:-;RightGenes=NM_025208:-;NM_033135:-;XRef=rs67756655 (chr11:103515683-103516027);Frequency=0.88
chr11	CG	SV	103515693	103516194	28	+	.	ID=2124;Type=deletion;Left=chr11:103515693-103516194;Right=chr11:103516037-103516404
chr11	CG	SV	103516037	103516404	28	+	.	ID=2124;Type=deletion;Left=chr11:103515693-103516194;Right=chr11:103516037-103516404
chr11	CG	SV	103772961	103778826	79	.	.	ID=2122;Type=deletion;Left=chr11:103772961-103773441+;Right=chr11:103778442-103778826+;Distance=5481;DiscordantMatePairAlignments=79;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67498645 (chr11:103772958-103778439);Frequency=0.88
chr11	CG	SV	103772961	103773441	79	+	.	ID=2122;Type=deletion;Left=chr11:103772961-103773441;Right=chr11:103778442-103778826
chr11	CG	SV	103778442	103778826	79	+	.	ID=2122;Type=deletion;Left=chr11:103772961-103773441;Right=chr11:103778442-103778826
chr11	CG	SV	104900059	104900463	11	.	.	ID=828;Type=tandem-duplication;Left=chr11:104900059-104900268-;Right=chr11:104900238-104900463-;Distance=195;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr11	CG	SV	104900059	104900268	11	-	.	ID=828;Type=tandem-duplication;Left=chr11:104900059-104900268;Right=chr11:104900238-104900463
chr11	CG	SV	104900238	104900463	11	-	.	ID=828;Type=tandem-duplication;Left=chr11:104900059-104900268;Right=chr11:104900238-104900463
chr11	CG	SV	105270731	105271511	10	.	.	ID=2121;Type=deletion;Left=chr11:105270731-105271147+;Right=chr11:105271050-105271511+;Distance=319;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_000829:+;NM_001077243:+;NM_001077244:+;NM_001112812:+;RightGenes=NM_000829:+;NM_001077243:+;NM_001077244:+;NM_001112812:+;XRef=rs10522523 (chr11:105270731-105271050);Frequency=0.18
chr11	CG	SV	105270731	105271147	10	+	.	ID=2121;Type=deletion;Left=chr11:105270731-105271147;Right=chr11:105271050-105271511
chr11	CG	SV	105271050	105271511	10	+	.	ID=2121;Type=deletion;Left=chr11:105270731-105271147;Right=chr11:105271050-105271511
chr11	CG	SV	113930121	113937585	84	.	.	ID=2119;Type=deletion;Left=chr11:113930121-113930564+;Right=chr11:113937141-113937585+;Distance=7020;DiscordantMatePairAlignments=84;LeftRepeat=MLT1J:LTR:MaLR;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_152315:-;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	113930121	113930564	84	+	.	ID=2119;Type=deletion;Left=chr11:113930121-113930564;Right=chr11:113937141-113937585
chr11	CG	SV	113937141	113937585	84	+	.	ID=2119;Type=deletion;Left=chr11:113930121-113930564;Right=chr11:113937141-113937585
chr11	CG	SV	113938523	130736056	142	.	.	ID=2115;Type=deletion;Left=chr11:113938523-113938961+;Right=chr11:130735676-130736056+;Distance=16797153;DiscordantMatePairAlignments=142;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	113938523	113938961	142	+	.	ID=2115;Type=deletion;Left=chr11:113938523-113938961;Right=chr11:130735676-130736056
chr11	CG	SV	130735676	130736056	142	+	.	ID=2115;Type=deletion;Left=chr11:113938523-113938961;Right=chr11:130735676-130736056
chr11	CG	SV	121852806	121854902	119	.	.	ID=2114;Type=deletion;Left=chr11:121852806-121853220+;Right=chr11:121854510-121854902+;Distance=1704;DiscordantMatePairAlignments=119;LeftRepeat=L1HS:LINE:L1;RightRepeat=GA-rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	121852806	121853220	119	+	.	ID=2114;Type=deletion;Left=chr11:121852806-121853220;Right=chr11:121854510-121854902
chr11	CG	SV	121854510	121854902	119	+	.	ID=2114;Type=deletion;Left=chr11:121852806-121853220;Right=chr11:121854510-121854902
chr11	CG	SV	122515809	122737894	72	.	.	ID=826;Type=tandem-duplication;Left=chr11:122515809-122516385-;Right=chr11:122737478-122737894-;Distance=221509;DiscordantMatePairAlignments=72;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_024769:-;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	122515809	122516385	72	-	.	ID=826;Type=tandem-duplication;Left=chr11:122515809-122516385;Right=chr11:122737478-122737894
chr11	CG	SV	122737478	122737894	72	-	.	ID=826;Type=tandem-duplication;Left=chr11:122515809-122516385;Right=chr11:122737478-122737894
chr11	CG	SV	126007804	126007877	26	.	.	ID=3525;Type=probable-inversion;Left=chr11:126007804-126008077+;Right=chr11:126007789-126007877-;Distance=73;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=;LeftGenes=NM_001161707:-;NM_032531:-;RightGenes=NM_001161707:-;NM_032531:-;XRef=;Frequency=1.00
chr11	CG	SV	126007804	126008077	26	+	.	ID=3525;Type=probable-inversion;Left=chr11:126007804-126008077;Right=chr11:126007789-126007877
chr11	CG	SV	126007789	126007877	26	+	.	ID=3525;Type=probable-inversion;Left=chr11:126007804-126008077;Right=chr11:126007789-126007877
chr11	CG	SV	128187926	128189062	37	.	.	ID=2112;Type=deletion;Left=chr11:128187926-128188356+;Right=chr11:128188620-128189062+;Distance=694;DiscordantMatePairAlignments=37;LeftRepeat=;RightRepeat=;LeftGenes=NM_001167681:+;NM_002017:+;RightGenes=;XRef=rs71759766 (chr11:128187927-128188620);Frequency=0.65
chr11	CG	SV	128187926	128188356	37	+	.	ID=2112;Type=deletion;Left=chr11:128187926-128188356;Right=chr11:128188620-128189062
chr11	CG	SV	128188620	128189062	37	+	.	ID=2112;Type=deletion;Left=chr11:128187926-128188356;Right=chr11:128188620-128189062
chr11	CG	SV	128518725	128520905	64	.	.	ID=2111;Type=deletion;Left=chr11:128518725-128519177+;Right=chr11:128520492-128520905+;Distance=1767;DiscordantMatePairAlignments=64;LeftRepeat=MER44C:DNA:MER2_type;RightRepeat=;LeftGenes=NM_001142685:-;RightGenes=NM_001142685:-;XRef=;Frequency=0.29
chr11	CG	SV	128518725	128519177	64	+	.	ID=2111;Type=deletion;Left=chr11:128518725-128519177;Right=chr11:128520492-128520905
chr11	CG	SV	128520492	128520905	64	+	.	ID=2111;Type=deletion;Left=chr11:128518725-128519177;Right=chr11:128520492-128520905
chr11	CG	SV	129730891	129735936	11	.	.	ID=2110;Type=deletion;Left=chr11:129730891-129731296+;Right=chr11:129735616-129735936+;Distance=4725;DiscordantMatePairAlignments=11;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	129730891	129731296	11	+	.	ID=2110;Type=deletion;Left=chr11:129730891-129731296;Right=chr11:129735616-129735936
chr11	CG	SV	129735616	129735936	11	+	.	ID=2110;Type=deletion;Left=chr11:129730891-129731296;Right=chr11:129735616-129735936
chr11	CG	SV	131055091	131055897	11	.	.	ID=824;Type=tandem-duplication;Left=chr11:131055091-131055495-;Right=chr11:131055812-131055897-;Distance=402;DiscordantMatePairAlignments=11;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Tandem period 26;Tandem period 78;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;Tandem TG;Tandem period 78;Tandem period 88;LeftGenes=NM_001048209:+;RightGenes=NM_001048209:+;XRef=;Frequency=0.76
chr11	CG	SV	131055091	131055495	11	-	.	ID=824;Type=tandem-duplication;Left=chr11:131055091-131055495;Right=chr11:131055812-131055897
chr11	CG	SV	131055812	131055897	11	-	.	ID=824;Type=tandem-duplication;Left=chr11:131055091-131055495;Right=chr11:131055812-131055897
chr11	CG	SV	131588836	131589610	21	.	.	ID=2109;Type=deletion;Left=chr11:131588836-131589299+;Right=chr11:131589150-131589610+;Distance=314;DiscordantMatePairAlignments=21;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001048209:+;NM_001144058:+;NM_001144059:+;NM_016522:+;RightGenes=NM_001048209:+;NM_001144058:+;NM_001144059:+;NM_016522:+;XRef=;Frequency=0.65
chr11	CG	SV	131588836	131589299	21	+	.	ID=2109;Type=deletion;Left=chr11:131588836-131589299;Right=chr11:131589150-131589610
chr11	CG	SV	131589150	131589610	21	+	.	ID=2109;Type=deletion;Left=chr11:131588836-131589299;Right=chr11:131589150-131589610
chr11	CG	SV	132729183	132729461	10	.	.	ID=823;Type=tandem-duplication;Left=chr11:132729183-132729304-;Right=chr11:132729311-132729461-;Distance=157;DiscordantMatePairAlignments=10;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;LeftGenes=NM_001012393:-;RightGenes=NM_001012393:-;XRef=;Frequency=0.47
chr11	CG	SV	132729183	132729304	10	-	.	ID=823;Type=tandem-duplication;Left=chr11:132729183-132729304;Right=chr11:132729311-132729461
chr11	CG	SV	132729311	132729461	10	-	.	ID=823;Type=tandem-duplication;Left=chr11:132729183-132729304;Right=chr11:132729311-132729461
chr11	CG	SV	134110465	134111389	49	.	.	ID=2108;Type=deletion;Left=chr11:134110465-134111003+;Right=chr11:134111077-134111389+;Distance=612;DiscordantMatePairAlignments=49;LeftRepeat=Self chain;Tandem period 36;RightRepeat=Self chain;Tandem period 36;LeftGenes=;RightGenes=;XRef=rs67758116 (chr11:134110307-134110991);Frequency=0.29
chr11	CG	SV	134110465	134111003	49	+	.	ID=2108;Type=deletion;Left=chr11:134110465-134111003;Right=chr11:134111077-134111389
chr11	CG	SV	134111077	134111389	49	+	.	ID=2108;Type=deletion;Left=chr11:134110465-134111003;Right=chr11:134111077-134111389
chr12	CG	SV	899182	900233	14	.	.	ID=2106;Type=deletion;Left=chr12:899182-899563+;Right=chr12:899991-900233+;Distance=809;DiscordantMatePairAlignments=14;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_134424:-;RightGenes=NM_134424:-;XRef=;Frequency=0.82
chr12	CG	SV	899182	899563	14	+	.	ID=2106;Type=deletion;Left=chr12:899182-899563;Right=chr12:899991-900233
chr12	CG	SV	899991	900233	14	+	.	ID=2106;Type=deletion;Left=chr12:899182-899563;Right=chr12:899991-900233
chr12	CG	SV	4952564	4953688	39	.	.	ID=2103;Type=deletion;Left=chr12:4952564-4952909+;Right=chr12:4953425-4953688+;Distance=861;DiscordantMatePairAlignments=39;LeftRepeat=Self chain;Tandem period 41;RightRepeat=Self chain;Tandem period 41;LeftGenes=;RightGenes=;XRef=rs71064124 (chr12:4952495-4953234);Frequency=1.00
chr12	CG	SV	4952564	4952909	39	+	.	ID=2103;Type=deletion;Left=chr12:4952564-4952909;Right=chr12:4953425-4953688
chr12	CG	SV	4953425	4953688	39	+	.	ID=2103;Type=deletion;Left=chr12:4952564-4952909;Right=chr12:4953425-4953688
chr12	CG	SV	6718000	6719185	10	.	.	ID=2101;Type=deletion;Left=chr12:6718000-6718259+;Right=chr12:6718785-6719185+;Distance=785;DiscordantMatePairAlignments=10;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	6718000	6718259	10	+	.	ID=2101;Type=deletion;Left=chr12:6718000-6718259;Right=chr12:6718785-6719185
chr12	CG	SV	6718785	6719185	10	+	.	ID=2101;Type=deletion;Left=chr12:6718000-6718259;Right=chr12:6718785-6719185
chr12	CG	SV	8908363	8909553	49	.	.	ID=2100;Type=deletion;Left=chr12:8908363-8908825+;Right=chr12:8909389-8909553+;Distance=1026;DiscordantMatePairAlignments=49;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=NM_144670:+;RightGenes=NM_144670:+;XRef=rs71042150 (chr12:8908119-8909146);Frequency=1.00
chr12	CG	SV	8908363	8908825	49	+	.	ID=2100;Type=deletion;Left=chr12:8908363-8908825;Right=chr12:8909389-8909553
chr12	CG	SV	8909389	8909553	49	+	.	ID=2100;Type=deletion;Left=chr12:8908363-8908825;Right=chr12:8909389-8909553
chr12	CG	SV	11083714	11109681	27	.	.	ID=2099;Type=deletion;Left=chr12:11083714-11083994+;Right=chr12:11109331-11109681+;Distance=25617;DiscordantMatePairAlignments=27;LeftRepeat=SegDup;Self chain;RightRepeat=L1MEe:LINE:L1;Self chain;LeftGenes=NM_001098538:-;NM_006250:-;RightGenes=NM_001098538:-;NM_006250:-;XRef=;Frequency=0.59
chr12	CG	SV	11083714	11083994	27	+	.	ID=2099;Type=deletion;Left=chr12:11083714-11083994;Right=chr12:11109331-11109681
chr12	CG	SV	11109331	11109681	27	+	.	ID=2099;Type=deletion;Left=chr12:11083714-11083994;Right=chr12:11109331-11109681
chr12	CG	SV	12436200	12437784	25	.	.	ID=3523;Type=complex;Left=chr12:12436200-12436538+;Right=chr12:12437468-12437784-;Distance=1584;DiscordantMatePairAlignments=25;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_058169:+;RightGenes=NM_058169:+;XRef=;Frequency=1.00
chr12	CG	SV	12436200	12436538	25	+	.	ID=3523;Type=complex;Left=chr12:12436200-12436538;Right=chr12:12437468-12437784
chr12	CG	SV	12437468	12437784	25	+	.	ID=3523;Type=complex;Left=chr12:12436200-12436538;Right=chr12:12437468-12437784
chr12	CG	SV	12436117	12438134	33	.	.	ID=209;Type=complex;Left=chr12:12436117-12436249-;Right=chr12:12437950-12438134+;Distance=1701;DiscordantMatePairAlignments=33;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_058169:+;RightGenes=NM_058169:+;XRef=;Frequency=1.00
chr12	CG	SV	12436117	12436249	33	-	.	ID=209;Type=complex;Left=chr12:12436117-12436249;Right=chr12:12437950-12438134
chr12	CG	SV	12437950	12438134	33	-	.	ID=209;Type=complex;Left=chr12:12436117-12436249;Right=chr12:12437950-12438134
chr12	CG	SV	16311390	16312945	55	.	.	ID=2098;Type=deletion;Left=chr12:16311390-16311812+;Right=chr12:16312550-16312945+;Distance=1160;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67843530 (chr12:16311390-16312549);Frequency=0.59
chr12	CG	SV	16311390	16311812	55	+	.	ID=2098;Type=deletion;Left=chr12:16311390-16311812;Right=chr12:16312550-16312945
chr12	CG	SV	16312550	16312945	55	+	.	ID=2098;Type=deletion;Left=chr12:16311390-16311812;Right=chr12:16312550-16312945
chr12	CG	SV	17498636	17499440	28	.	.	ID=2096;Type=deletion;Left=chr12:17498636-17499048+;Right=chr12:17499140-17499440+;Distance=504;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr12	CG	SV	17498636	17499048	28	+	.	ID=2096;Type=deletion;Left=chr12:17498636-17499048;Right=chr12:17499140-17499440
chr12	CG	SV	17499140	17499440	28	+	.	ID=2096;Type=deletion;Left=chr12:17498636-17499048;Right=chr12:17499140-17499440
chr12	CG	SV	23687007	23687651	10	.	.	ID=2092;Type=deletion;Left=chr12:23687007-23687437+;Right=chr12:23687320-23687651+;Distance=313;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=NM_006940:-;NM_152989:-;RightGenes=NM_006940:-;NM_152989:-;XRef=;Frequency=0.65
chr12	CG	SV	23687007	23687437	10	+	.	ID=2092;Type=deletion;Left=chr12:23687007-23687437;Right=chr12:23687320-23687651
chr12	CG	SV	23687320	23687651	10	+	.	ID=2092;Type=deletion;Left=chr12:23687007-23687437;Right=chr12:23687320-23687651
chr12	CG	SV	23830789	23831670	21	.	.	ID=2091;Type=deletion;Left=chr12:23830789-23831203+;Right=chr12:23831356-23831670+;Distance=567;DiscordantMatePairAlignments=21;LeftRepeat=;RightRepeat=;LeftGenes=NM_006940:-;NM_152989:-;RightGenes=NM_006940:-;NM_152989:-;XRef=;Frequency=0.59
chr12	CG	SV	23830789	23831203	21	+	.	ID=2091;Type=deletion;Left=chr12:23830789-23831203;Right=chr12:23831356-23831670
chr12	CG	SV	23831356	23831670	21	+	.	ID=2091;Type=deletion;Left=chr12:23830789-23831203;Right=chr12:23831356-23831670
chr12	CG	SV	24832196	24833397	175	.	.	ID=2090;Type=deletion;Left=chr12:24832196-24832581+;Right=chr12:24832898-24833397+;Distance=702;DiscordantMatePairAlignments=175;LeftRepeat=LTR16A:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr12	CG	SV	24832196	24832581	175	+	.	ID=2090;Type=deletion;Left=chr12:24832196-24832581;Right=chr12:24832898-24833397
chr12	CG	SV	24832898	24833397	175	+	.	ID=2090;Type=deletion;Left=chr12:24832196-24832581;Right=chr12:24832898-24833397
chr12	CG	SV	25847096	124367445	39	.	.	ID=205;Type=complex;Left=chr12:25847096-25847393-;Right=chr12:124367100-124367445+;Distance=98519707;DiscordantMatePairAlignments=39;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	25847096	25847393	39	-	.	ID=205;Type=complex;Left=chr12:25847096-25847393;Right=chr12:124367100-124367445
chr12	CG	SV	124367100	124367445	39	-	.	ID=205;Type=complex;Left=chr12:25847096-25847393;Right=chr12:124367100-124367445
chr12	CG	SV	26402304	26403105	22	.	.	ID=2089;Type=deletion;Left=chr12:26402304-26402745+;Right=chr12:26402636-26403105+;Distance=332;DiscordantMatePairAlignments=22;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_002223:-;RightGenes=NM_002223:-;XRef=rs68179015 (chr12:26402304-26402636);Frequency=1.00
chr12	CG	SV	26402304	26402745	22	+	.	ID=2089;Type=deletion;Left=chr12:26402304-26402745;Right=chr12:26402636-26403105
chr12	CG	SV	26402636	26403105	22	+	.	ID=2089;Type=deletion;Left=chr12:26402304-26402745;Right=chr12:26402636-26403105
chr12	CG	SV	27325270	27325931	18	.	.	ID=2088;Type=deletion;Left=chr12:27325270-27325726+;Right=chr12:27325601-27325931+;Distance=331;DiscordantMatePairAlignments=18;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_015000:+;RightGenes=NM_015000:+;XRef=rs72425621 (chr12:27325254-27325585);Frequency=0.88
chr12	CG	SV	27325270	27325726	18	+	.	ID=2088;Type=deletion;Left=chr12:27325270-27325726;Right=chr12:27325601-27325931
chr12	CG	SV	27325601	27325931	18	+	.	ID=2088;Type=deletion;Left=chr12:27325270-27325726;Right=chr12:27325601-27325931
chr12	CG	SV	29464687	29465533	21	.	.	ID=2086;Type=deletion;Left=chr12:29464687-29465054+;Right=chr12:29465028-29465533+;Distance=341;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67361605 (chr12:29464687-29465028);Frequency=0.94
chr12	CG	SV	29464687	29465054	21	+	.	ID=2086;Type=deletion;Left=chr12:29464687-29465054;Right=chr12:29465028-29465533
chr12	CG	SV	29465028	29465533	21	+	.	ID=2086;Type=deletion;Left=chr12:29464687-29465054;Right=chr12:29465028-29465533
chr12	CG	SV	30262584	30263353	20	.	.	ID=2085;Type=deletion;Left=chr12:30262584-30262990+;Right=chr12:30263009-30263353+;Distance=425;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=Self chain;Tigger3b:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr12	CG	SV	30262584	30262990	20	+	.	ID=2085;Type=deletion;Left=chr12:30262584-30262990;Right=chr12:30263009-30263353
chr12	CG	SV	30263009	30263353	20	+	.	ID=2085;Type=deletion;Left=chr12:30262584-30262990;Right=chr12:30263009-30263353
chr12	CG	SV	30369554	30372763	47	.	.	ID=2084;Type=deletion;Left=chr12:30369554-30370039+;Right=chr12:30372260-30372763+;Distance=2706;DiscordantMatePairAlignments=47;LeftRepeat=LTR41:LTR:ERVL;Self chain;RightRepeat=MER52C:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs66727704 (chr12:30369554-30372260);Frequency=0.41
chr12	CG	SV	30369554	30370039	47	+	.	ID=2084;Type=deletion;Left=chr12:30369554-30370039;Right=chr12:30372260-30372763
chr12	CG	SV	30372260	30372763	47	+	.	ID=2084;Type=deletion;Left=chr12:30369554-30370039;Right=chr12:30372260-30372763
chr12	CG	SV	32854882	32855637	10	.	.	ID=2082;Type=deletion;Left=chr12:32854882-32855323+;Right=chr12:32855197-32855637+;Distance=315;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;Tigger4(Zombi):DNA:MER2_type;LeftGenes=NM_001005242:-;NM_004572:-;RightGenes=NM_001005242:-;NM_004572:-;XRef=rs71042168 (chr12:32854882-32855197);Frequency=1.00
chr12	CG	SV	32854882	32855323	10	+	.	ID=2082;Type=deletion;Left=chr12:32854882-32855323;Right=chr12:32855197-32855637
chr12	CG	SV	32855197	32855637	10	+	.	ID=2082;Type=deletion;Left=chr12:32854882-32855323;Right=chr12:32855197-32855637
chr12	CG	SV	42263725	42266223	164	.	.	ID=2073;Type=deletion;Left=chr12:42263725-42264173+;Right=chr12:42265825-42266223+;Distance=2100;DiscordantMatePairAlignments=164;LeftRepeat=L1P1:LINE:L1;RightRepeat=LTR52:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs67022104 (chr12:42263727-42265827);Frequency=1.00
chr12	CG	SV	42263725	42264173	164	+	.	ID=2073;Type=deletion;Left=chr12:42263725-42264173;Right=chr12:42265825-42266223
chr12	CG	SV	42265825	42266223	164	+	.	ID=2073;Type=deletion;Left=chr12:42263725-42264173;Right=chr12:42265825-42266223
chr12	CG	SV	44189420	44196585	116	.	.	ID=2072;Type=deletion;Left=chr12:44189420-44189874+;Right=chr12:44196206-44196585+;Distance=6786;DiscordantMatePairAlignments=116;LeftRepeat=MSTD-int:LTR:MaLR;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72102706 (chr12:44189420-44196206);Frequency=0.76
chr12	CG	SV	44189420	44189874	116	+	.	ID=2072;Type=deletion;Left=chr12:44189420-44189874;Right=chr12:44196206-44196585
chr12	CG	SV	44196206	44196585	116	+	.	ID=2072;Type=deletion;Left=chr12:44189420-44189874;Right=chr12:44196206-44196585
chr12	CG	SV	45361633	45362415	21	.	.	ID=2071;Type=deletion;Left=chr12:45361633-45361951+;Right=chr12:45361981-45362415+;Distance=348;DiscordantMatePairAlignments=21;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6144704 (chr12:45361633-45361981);Frequency=1.00
chr12	CG	SV	45361633	45361951	21	+	.	ID=2071;Type=deletion;Left=chr12:45361633-45361951;Right=chr12:45361981-45362415
chr12	CG	SV	45361981	45362415	21	+	.	ID=2071;Type=deletion;Left=chr12:45361633-45361951;Right=chr12:45361981-45362415
chr12	CG	SV	51882401	51883075	14	.	.	ID=2069;Type=deletion;Left=chr12:51882401-51882837+;Right=chr12:51882837-51883075+;Distance=436;DiscordantMatePairAlignments=14;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_000889:-;RightGenes=NM_000889:-;XRef=;Frequency=0.00
chr12	CG	SV	51882401	51882837	14	+	.	ID=2069;Type=deletion;Left=chr12:51882401-51882837;Right=chr12:51882837-51883075
chr12	CG	SV	51882837	51883075	14	+	.	ID=2069;Type=deletion;Left=chr12:51882401-51882837;Right=chr12:51882837-51883075
chr12	CG	SV	54013481	54014907	21	.	.	ID=2067;Type=deletion;Left=chr12:54013481-54013770+;Right=chr12:54014455-54014907+;Distance=974;DiscordantMatePairAlignments=21;LeftRepeat=LTR5_Hs:LTR:ERVK;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71674010 (chr12:54013481-54014455);Frequency=0.47
chr12	CG	SV	54013481	54013770	21	+	.	ID=2067;Type=deletion;Left=chr12:54013481-54013770;Right=chr12:54014455-54014907
chr12	CG	SV	54014455	54014907	21	+	.	ID=2067;Type=deletion;Left=chr12:54013481-54013770;Right=chr12:54014455-54014907
chr12	CG	SV	58808112	58811627	36	.	.	ID=2066;Type=deletion;Left=chr12:58808112-58808516+;Right=chr12:58811308-58811627+;Distance=3196;DiscordantMatePairAlignments=36;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71042189 (chr12:58808112-58811308);Frequency=0.59
chr12	CG	SV	58808112	58808516	36	+	.	ID=2066;Type=deletion;Left=chr12:58808112-58808516;Right=chr12:58811308-58811627
chr12	CG	SV	58811308	58811627	36	+	.	ID=2066;Type=deletion;Left=chr12:58808112-58808516;Right=chr12:58811308-58811627
chr12	CG	SV	64813918	64816595	34	.	.	ID=2065;Type=deletion;Left=chr12:64813918-64814337+;Right=chr12:64816159-64816595+;Distance=2241;DiscordantMatePairAlignments=34;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67481727 (chr12:64813918-64816159);Frequency=0.41
chr12	CG	SV	64813918	64814337	34	+	.	ID=2065;Type=deletion;Left=chr12:64813918-64814337;Right=chr12:64816159-64816595
chr12	CG	SV	64816159	64816595	34	+	.	ID=2065;Type=deletion;Left=chr12:64813918-64814337;Right=chr12:64816159-64816595
chr12	CG	SV	67833248	117217340	12	.	.	ID=809;Type=tandem-duplication;Left=chr12:67833248-67833639-;Right=chr12:117217150-117217340-;Distance=49383701;DiscordantMatePairAlignments=12;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=NM_016281:-;XRef=;Frequency=0.59
chr12	CG	SV	67833248	67833639	12	-	.	ID=809;Type=tandem-duplication;Left=chr12:67833248-67833639;Right=chr12:117217150-117217340
chr12	CG	SV	117217150	117217340	12	-	.	ID=809;Type=tandem-duplication;Left=chr12:67833248-67833639;Right=chr12:117217150-117217340
chr12	CG	SV	68881131	68884385	40	.	.	ID=2063;Type=deletion;Left=chr12:68881131-68881455+;Right=chr12:68883862-68884385+;Distance=2731;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67387579 (chr12:68881131-68883862);Frequency=0.88
chr12	CG	SV	68881131	68881455	40	+	.	ID=2063;Type=deletion;Left=chr12:68881131-68881455;Right=chr12:68883862-68884385
chr12	CG	SV	68883862	68884385	40	+	.	ID=2063;Type=deletion;Left=chr12:68881131-68881455;Right=chr12:68883862-68884385
chr12	CG	SV	69818641	69820355	72	.	.	ID=206;Type=distal-duplication;Left=chr12:69818641-69819060-;Right=chr12:69820021-69820355+;Distance=961;DiscordantMatePairAlignments=72;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_004616:-;RightGenes=NM_004616:-;XRef=;Frequency=0.65
chr12	CG	SV	69818641	69819060	72	-	.	ID=206;Type=distal-duplication;Left=chr12:69818641-69819060;Right=chr12:69820021-69820355
chr12	CG	SV	69820021	69820355	72	-	.	ID=206;Type=distal-duplication;Left=chr12:69818641-69819060;Right=chr12:69820021-69820355
chr12	CG	SV	69819544	69820019	89	.	.	ID=3519;Type=distal-duplication;Left=chr12:69819544-69820019+;Right=chr12:69819563-69820019-;Distance=475;DiscordantMatePairAlignments=89;LeftRepeat=(TGAA)n:Simple_repeat:Simple_repeat;RightRepeat=L2:LINE:L2;LeftGenes=NM_004616:-;RightGenes=NM_004616:-;XRef=;Frequency=0.65
chr12	CG	SV	69819544	69820019	89	+	.	ID=3519;Type=distal-duplication;Left=chr12:69819544-69820019;Right=chr12:69819563-69820019
chr12	CG	SV	69819563	69820019	89	+	.	ID=3519;Type=distal-duplication;Left=chr12:69819544-69820019;Right=chr12:69819563-69820019
chr12	CG	SV	70642941	70644719	16	.	.	ID=2062;Type=deletion;Left=chr12:70642941-70643323+;Right=chr12:70644505-70644719+;Distance=1564;DiscordantMatePairAlignments=16;LeftRepeat=AluSg/x:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Tandem period 9;LeftGenes=NM_173353:+;RightGenes=NM_173353:+;XRef=rs71042195 (chr12:70642884-70644448);Frequency=1.00
chr12	CG	SV	70642941	70643323	16	+	.	ID=2062;Type=deletion;Left=chr12:70642941-70643323;Right=chr12:70644505-70644719
chr12	CG	SV	70644505	70644719	16	+	.	ID=2062;Type=deletion;Left=chr12:70642941-70643323;Right=chr12:70644505-70644719
chr12	CG	SV	78678377	78686738	60	.	.	ID=814;Type=tandem-duplication;Left=chr12:78678377-78678855-;Right=chr12:78686486-78686738-;Distance=7883;DiscordantMatePairAlignments=60;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr12	CG	SV	78678377	78678855	60	-	.	ID=814;Type=tandem-duplication;Left=chr12:78678377-78678855;Right=chr12:78686486-78686738
chr12	CG	SV	78686486	78686738	60	-	.	ID=814;Type=tandem-duplication;Left=chr12:78678377-78678855;Right=chr12:78686486-78686738
chr12	CG	SV	80663847	80668892	77	.	.	ID=2060;Type=deletion;Left=chr12:80663847-80664322+;Right=chr12:80668451-80668892+;Distance=4604;DiscordantMatePairAlignments=77;LeftRepeat=;RightRepeat=;LeftGenes=NM_003625:-;RightGenes=NM_003625:-;XRef=;Frequency=0.12
chr12	CG	SV	80663847	80664322	77	+	.	ID=2060;Type=deletion;Left=chr12:80663847-80664322;Right=chr12:80668451-80668892
chr12	CG	SV	80668451	80668892	77	+	.	ID=2060;Type=deletion;Left=chr12:80663847-80664322;Right=chr12:80668451-80668892
chr12	CG	SV	83117245	83120577	37	.	.	ID=2058;Type=deletion;Left=chr12:83117245-83117635+;Right=chr12:83120148-83120577+;Distance=2903;DiscordantMatePairAlignments=37;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72045293 (chr12:83117245-83120148);Frequency=0.71
chr12	CG	SV	83117245	83117635	37	+	.	ID=2058;Type=deletion;Left=chr12:83117245-83117635;Right=chr12:83120148-83120577
chr12	CG	SV	83120148	83120577	37	+	.	ID=2058;Type=deletion;Left=chr12:83117245-83117635;Right=chr12:83120148-83120577
chr12	CG	SV	85728932	85729967	16	.	.	ID=2057;Type=deletion;Left=chr12:85728932-85729358+;Right=chr12:85729835-85729967+;Distance=903;DiscordantMatePairAlignments=16;LeftRepeat=L1MDb:LINE:L1;RightRepeat=L1MDb:LINE:L1;LeftGenes=NM_013244:-;RightGenes=NM_013244:-;XRef=;Frequency=0.88
chr12	CG	SV	85728932	85729358	16	+	.	ID=2057;Type=deletion;Left=chr12:85728932-85729358;Right=chr12:85729835-85729967
chr12	CG	SV	85729835	85729967	16	+	.	ID=2057;Type=deletion;Left=chr12:85728932-85729358;Right=chr12:85729835-85729967
chr12	CG	SV	92028424	92029888	42	.	.	ID=2056;Type=deletion;Left=chr12:92028424-92028773+;Right=chr12:92029518-92029888+;Distance=1094;DiscordantMatePairAlignments=42;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72391384 (chr12:92028431-92029518);Frequency=0.06
chr12	CG	SV	92028424	92028773	42	+	.	ID=2056;Type=deletion;Left=chr12:92028424-92028773;Right=chr12:92029518-92029888
chr12	CG	SV	92029518	92029888	42	+	.	ID=2056;Type=deletion;Left=chr12:92028424-92028773;Right=chr12:92029518-92029888
chr12	CG	SV	92368594	92370673	32	.	.	ID=812;Type=tandem-duplication;Left=chr12:92368594-92368863-;Right=chr12:92370261-92370673-;Distance=1810;DiscordantMatePairAlignments=32;LeftRepeat=AluJ/FLAM:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr12	CG	SV	92368594	92368863	32	-	.	ID=812;Type=tandem-duplication;Left=chr12:92368594-92368863;Right=chr12:92370261-92370673
chr12	CG	SV	92370261	92370673	32	-	.	ID=812;Type=tandem-duplication;Left=chr12:92368594-92368863;Right=chr12:92370261-92370673
chr12	CG	SV	93768157	93768976	18	.	.	ID=2055;Type=deletion;Left=chr12:93768157-93768564+;Right=chr12:93768580-93768976+;Distance=423;DiscordantMatePairAlignments=18;LeftRepeat=L1MA4A:LINE:L1;RightRepeat=MSTB1:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs71045005 (chr12:93768157-93768580);Frequency=0.94
chr12	CG	SV	93768157	93768564	18	+	.	ID=2055;Type=deletion;Left=chr12:93768157-93768564;Right=chr12:93768580-93768976
chr12	CG	SV	93768580	93768976	18	+	.	ID=2055;Type=deletion;Left=chr12:93768157-93768564;Right=chr12:93768580-93768976
chr12	CG	SV	94757723	94760902	26	.	.	ID=2053;Type=deletion;Left=chr12:94757723-94758096+;Right=chr12:94760469-94760902+;Distance=2746;DiscordantMatePairAlignments=26;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66521162 (chr12:94757723-94760469);Frequency=0.94
chr12	CG	SV	94757723	94758096	26	+	.	ID=2053;Type=deletion;Left=chr12:94757723-94758096;Right=chr12:94760469-94760902
chr12	CG	SV	94760469	94760902	26	+	.	ID=2053;Type=deletion;Left=chr12:94757723-94758096;Right=chr12:94760469-94760902
chr12	CG	SV	96078872	96079674	17	.	.	ID=2052;Type=deletion;Left=chr12:96078872-96079294+;Right=chr12:96079200-96079674+;Distance=328;DiscordantMatePairAlignments=17;LeftRepeat=L2:LINE:L2;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs66686263 (chr12:96078872-96079200);Frequency=1.00
chr12	CG	SV	96078872	96079294	17	+	.	ID=2052;Type=deletion;Left=chr12:96078872-96079294;Right=chr12:96079200-96079674
chr12	CG	SV	96079200	96079674	17	+	.	ID=2052;Type=deletion;Left=chr12:96078872-96079294;Right=chr12:96079200-96079674
chr12	CG	SV	100626541	100631569	52	.	.	ID=2050;Type=deletion;Left=chr12:100626541-100626855+;Right=chr12:100631221-100631569+;Distance=4680;DiscordantMatePairAlignments=52;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L1MEc:LINE:L1;LeftGenes=NM_020244:+;RightGenes=NM_020244:+;XRef=;Frequency=0.53
chr12	CG	SV	100626541	100626855	52	+	.	ID=2050;Type=deletion;Left=chr12:100626541-100626855;Right=chr12:100631221-100631569
chr12	CG	SV	100631221	100631569	52	+	.	ID=2050;Type=deletion;Left=chr12:100626541-100626855;Right=chr12:100631221-100631569
chr12	CG	SV	102817537	102818229	19	.	.	ID=2049;Type=deletion;Left=chr12:102817537-102817947+;Right=chr12:102817865-102818229+;Distance=328;DiscordantMatePairAlignments=19;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NR_027249:-;RightGenes=NR_027249:-;XRef=rs72069280 (chr12:102817523-102817850);Frequency=1.00
chr12	CG	SV	102817537	102817947	19	+	.	ID=2049;Type=deletion;Left=chr12:102817537-102817947;Right=chr12:102817865-102818229
chr12	CG	SV	102817865	102818229	19	+	.	ID=2049;Type=deletion;Left=chr12:102817537-102817947;Right=chr12:102817865-102818229
chr12	CG	SV	102883559	124367679	63	.	.	ID=203;Type=complex;Left=chr12:102883559-102883759-;Right=chr12:124367100-124367679+;Distance=21483341;DiscordantMatePairAlignments=63;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_003211:+;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	102883559	102883759	63	-	.	ID=203;Type=complex;Left=chr12:102883559-102883759;Right=chr12:124367100-124367679
chr12	CG	SV	124367100	124367679	63	-	.	ID=203;Type=complex;Left=chr12:102883559-102883759;Right=chr12:124367100-124367679
chr12	CG	SV	104297655	104298390	21	.	.	ID=2046;Type=deletion;Left=chr12:104297655-104298156+;Right=chr12:104298061-104298390+;Distance=406;DiscordantMatePairAlignments=21;LeftRepeat=AluY:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs71843479 (chr12:104297644-104297968);Frequency=0.88
chr12	CG	SV	104297655	104298156	21	+	.	ID=2046;Type=deletion;Left=chr12:104297655-104298156;Right=chr12:104298061-104298390
chr12	CG	SV	104298061	104298390	21	+	.	ID=2046;Type=deletion;Left=chr12:104297655-104298156;Right=chr12:104298061-104298390
chr12	CG	SV	120630979	120632390	42	.	.	ID=2041;Type=deletion;Left=chr12:120630979-120631234+;Right=chr12:120632071-120632390+;Distance=1092;DiscordantMatePairAlignments=42;LeftRepeat=MIR:SINE:MIR;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	120630979	120631234	42	+	.	ID=2041;Type=deletion;Left=chr12:120630979-120631234;Right=chr12:120632071-120632390
chr12	CG	SV	120632071	120632390	42	+	.	ID=2041;Type=deletion;Left=chr12:120630979-120631234;Right=chr12:120632071-120632390
chr12	CG	SV	121576304	121577032	20	.	.	ID=2040;Type=deletion;Left=chr12:121576304-121576708+;Right=chr12:121576633-121577032+;Distance=329;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_023012:-;NM_198261:-;NM_198262:-;RightGenes=NM_023012:-;NM_198261:-;NM_198262:-;XRef=rs10526242 (chr12:121576299-121576628);Frequency=0.82
chr12	CG	SV	121576304	121576708	20	+	.	ID=2040;Type=deletion;Left=chr12:121576304-121576708;Right=chr12:121576633-121577032
chr12	CG	SV	121576633	121577032	20	+	.	ID=2040;Type=deletion;Left=chr12:121576304-121576708;Right=chr12:121576633-121577032
chr12	CG	SV	125349470	125356056	116	.	.	ID=2034;Type=deletion;Left=chr12:125349470-125349991+;Right=chr12:125355564-125356056+;Distance=6094;DiscordantMatePairAlignments=116;LeftRepeat=L1HS:LINE:L1;Self chain;Tandem T;RightRepeat=MSTB1:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr12	CG	SV	125349470	125349991	116	+	.	ID=2034;Type=deletion;Left=chr12:125349470-125349991;Right=chr12:125355564-125356056
chr12	CG	SV	125355564	125356056	116	+	.	ID=2034;Type=deletion;Left=chr12:125349470-125349991;Right=chr12:125355564-125356056
chr12	CG	SV	126957019	126957891	17	.	.	ID=3517;Type=probable-inversion;Left=chr12:126957019-126957396+;Right=chr12:126957780-126957891-;Distance=872;DiscordantMatePairAlignments=17;LeftRepeat=(TA)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=L1ME1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	126957019	126957396	17	+	.	ID=3517;Type=probable-inversion;Left=chr12:126957019-126957396;Right=chr12:126957780-126957891
chr12	CG	SV	126957780	126957891	17	+	.	ID=3517;Type=probable-inversion;Left=chr12:126957019-126957396;Right=chr12:126957780-126957891
chr12	CG	SV	128626256	128626955	10	.	.	ID=2031;Type=deletion;Left=chr12:128626256-128626629+;Right=chr12:128626587-128626955+;Distance=331;DiscordantMatePairAlignments=10;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_133448:-;RightGenes=NM_133448:-;XRef=rs68194414 (chr12:128626240-128626571);Frequency=0.94
chr12	CG	SV	128626256	128626629	10	+	.	ID=2031;Type=deletion;Left=chr12:128626256-128626629;Right=chr12:128626587-128626955
chr12	CG	SV	128626587	128626955	10	+	.	ID=2031;Type=deletion;Left=chr12:128626256-128626629;Right=chr12:128626587-128626955
chr12	CG	SV	129932703	129933764	24	.	.	ID=2029;Type=deletion;Left=chr12:129932703-129932998+;Right=chr12:129933171-129933764+;Distance=468;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;Tandem period 134;Tandem period 68;RightRepeat=Self chain;Tandem period 134;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr12	CG	SV	129932703	129932998	24	+	.	ID=2029;Type=deletion;Left=chr12:129932703-129932998;Right=chr12:129933171-129933764
chr12	CG	SV	129933171	129933764	24	+	.	ID=2029;Type=deletion;Left=chr12:129932703-129932998;Right=chr12:129933171-129933764
chr12	CG	SV	131452456	131453130	50	.	.	ID=2028;Type=deletion;Left=chr12:131452456-131453003+;Right=chr12:131452810-131453130+;Distance=354;DiscordantMatePairAlignments=50;LeftRepeat=Self chain;Tandem period 118;Tandem period 59;RightRepeat=Self chain;Tandem period 118;Tandem period 59;LeftGenes=;RightGenes=;XRef=rs72417838 (chr12:131452469-131452823);Frequency=0.88
chr12	CG	SV	131452456	131453003	50	+	.	ID=2028;Type=deletion;Left=chr12:131452456-131453003;Right=chr12:131452810-131453130
chr12	CG	SV	131452810	131453130	50	+	.	ID=2028;Type=deletion;Left=chr12:131452456-131453003;Right=chr12:131452810-131453130
chr13	CG	SV	24207559	24208216	16	.	.	ID=2024;Type=deletion;Left=chr13:24207559-24207934+;Right=chr13:24207931-24208216+;Distance=372;DiscordantMatePairAlignments=16;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72155763 (chr13:24207519-24207891);Frequency=0.24
chr13	CG	SV	24207559	24207934	16	+	.	ID=2024;Type=deletion;Left=chr13:24207559-24207934;Right=chr13:24207931-24208216
chr13	CG	SV	24207931	24208216	16	+	.	ID=2024;Type=deletion;Left=chr13:24207559-24207934;Right=chr13:24207931-24208216
chr13	CG	SV	26444573	26445687	14	.	.	ID=807;Type=tandem-duplication;Left=chr13:26444573-26444939-;Right=chr13:26445533-26445687-;Distance=748;DiscordantMatePairAlignments=14;LeftRepeat=(CA)n:Simple_repeat:Simple_repeat;Tandem CA;Tandem period 9;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr13	CG	SV	26444573	26444939	14	-	.	ID=807;Type=tandem-duplication;Left=chr13:26444573-26444939;Right=chr13:26445533-26445687
chr13	CG	SV	26445533	26445687	14	-	.	ID=807;Type=tandem-duplication;Left=chr13:26444573-26444939;Right=chr13:26445533-26445687
chr13	CG	SV	28852766	28853466	27	.	.	ID=2018;Type=deletion;Left=chr13:28852766-28853253+;Right=chr13:28853090-28853466+;Distance=324;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=;LeftGenes=NM_001033602:+;RightGenes=NM_001033602:+;XRef=rs67907214 (chr13:28852757-28853081);Frequency=0.94
chr13	CG	SV	28852766	28853253	27	+	.	ID=2018;Type=deletion;Left=chr13:28852766-28853253;Right=chr13:28853090-28853466
chr13	CG	SV	28853090	28853466	27	+	.	ID=2018;Type=deletion;Left=chr13:28852766-28853253;Right=chr13:28853090-28853466
chr13	CG	SV	30094958	30096177	112	.	.	ID=2017;Type=deletion;Left=chr13:30094958-30095348+;Right=chr13:30095770-30096177+;Distance=812;DiscordantMatePairAlignments=112;LeftRepeat=;RightRepeat=MER21B:LTR:ERV1;LeftGenes=NM_005800:+;RightGenes=NM_005800:+;XRef=;Frequency=0.00
chr13	CG	SV	30094958	30095348	112	+	.	ID=2017;Type=deletion;Left=chr13:30094958-30095348;Right=chr13:30095770-30096177
chr13	CG	SV	30095770	30096177	112	+	.	ID=2017;Type=deletion;Left=chr13:30094958-30095348;Right=chr13:30095770-30096177
chr13	CG	SV	36312467	36313184	18	.	.	ID=2007;Type=deletion;Left=chr13:36312467-36313019+;Right=chr13:36312787-36313184+;Distance=320;DiscordantMatePairAlignments=18;LeftRepeat=LTR1:LTR:ERV1;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs71079183 (chr13:36312467-36312787);Frequency=1.00
chr13	CG	SV	36312467	36313019	18	+	.	ID=2007;Type=deletion;Left=chr13:36312467-36313019;Right=chr13:36312787-36313184
chr13	CG	SV	36312787	36313184	18	+	.	ID=2007;Type=deletion;Left=chr13:36312467-36313019;Right=chr13:36312787-36313184
chr13	CG	SV	36969943	36983928	32	.	.	ID=2006;Type=deletion;Left=chr13:36969943-36970328+;Right=chr13:36983580-36983928+;Distance=13637;DiscordantMatePairAlignments=32;LeftRepeat=AluSg/x:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr13	CG	SV	36969943	36970328	32	+	.	ID=2006;Type=deletion;Left=chr13:36969943-36970328;Right=chr13:36983580-36983928
chr13	CG	SV	36983580	36983928	32	+	.	ID=2006;Type=deletion;Left=chr13:36969943-36970328;Right=chr13:36983580-36983928
chr13	CG	SV	37955319	37958559	34	.	.	ID=2005;Type=deletion;Left=chr13:37955319-37955799+;Right=chr13:37958205-37958559+;Distance=2886;DiscordantMatePairAlignments=34;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71695759 (chr13:37955315-37958201);Frequency=0.94
chr13	CG	SV	37955319	37955799	34	+	.	ID=2005;Type=deletion;Left=chr13:37955319-37955799;Right=chr13:37958205-37958559
chr13	CG	SV	37958205	37958559	34	+	.	ID=2005;Type=deletion;Left=chr13:37955319-37955799;Right=chr13:37958205-37958559
chr13	CG	SV	41844900	41845652	126	.	.	ID=793;Type=tandem-duplication;Left=chr13:41844900-41845268-;Right=chr13:41845282-41845652-;Distance=384;DiscordantMatePairAlignments=126;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr13	CG	SV	41844900	41845268	126	-	.	ID=793;Type=tandem-duplication;Left=chr13:41844900-41845268;Right=chr13:41845282-41845652
chr13	CG	SV	41845282	41845652	126	-	.	ID=793;Type=tandem-duplication;Left=chr13:41844900-41845268;Right=chr13:41845282-41845652
chr13	CG	SV	41951304	41952244	35	.	.	ID=2003;Type=deletion;Left=chr13:41951304-41951661+;Right=chr13:41951948-41952244+;Distance=644;DiscordantMatePairAlignments=35;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72375475 (chr13:41951191-41951835);Frequency=0.29
chr13	CG	SV	41951304	41951661	35	+	.	ID=2003;Type=deletion;Left=chr13:41951304-41951661;Right=chr13:41951948-41952244
chr13	CG	SV	41951948	41952244	35	+	.	ID=2003;Type=deletion;Left=chr13:41951304-41951661;Right=chr13:41951948-41952244
chr13	CG	SV	42437801	42439873	185	.	.	ID=2002;Type=deletion;Left=chr13:42437801-42438295+;Right=chr13:42439454-42439873+;Distance=1653;DiscordantMatePairAlignments=185;LeftRepeat=;RightRepeat=;LeftGenes=NM_001002264:-;NM_033255:-;RightGenes=NM_001002264:-;NM_033255:-;XRef=rs67713275 (chr13:42437794-42439447);Frequency=0.82
chr13	CG	SV	42437801	42438295	185	+	.	ID=2002;Type=deletion;Left=chr13:42437801-42438295;Right=chr13:42439454-42439873
chr13	CG	SV	42439454	42439873	185	+	.	ID=2002;Type=deletion;Left=chr13:42437801-42438295;Right=chr13:42439454-42439873
chr13	CG	SV	44903455	44904083	19	.	.	ID=2001;Type=deletion;Left=chr13:44903455-44903924+;Right=chr13:44903792-44904083+;Distance=337;DiscordantMatePairAlignments=19;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	44903455	44903924	19	+	.	ID=2001;Type=deletion;Left=chr13:44903455-44903924;Right=chr13:44903792-44904083
chr13	CG	SV	44903792	44904083	19	+	.	ID=2001;Type=deletion;Left=chr13:44903455-44903924;Right=chr13:44903792-44904083
chr13	CG	SV	49967351	49973447	42	.	.	ID=1996;Type=deletion;Left=chr13:49967351-49967708+;Right=chr13:49973083-49973447+;Distance=5732;DiscordantMatePairAlignments=42;LeftRepeat=Self chain;RightRepeat=MSTB-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67883993 (chr13:49967351-49973083);Frequency=0.94
chr13	CG	SV	49967351	49967708	42	+	.	ID=1996;Type=deletion;Left=chr13:49967351-49967708;Right=chr13:49973083-49973447
chr13	CG	SV	49973083	49973447	42	+	.	ID=1996;Type=deletion;Left=chr13:49967351-49967708;Right=chr13:49973083-49973447
chr13	CG	SV	59070500	59071169	17	.	.	ID=1992;Type=deletion;Left=chr13:59070500-59070980+;Right=chr13:59070833-59071169+;Distance=333;DiscordantMatePairAlignments=17;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=L1MDa:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71085620 (chr13:59070500-59070833);Frequency=1.00
chr13	CG	SV	59070500	59070980	17	+	.	ID=1992;Type=deletion;Left=chr13:59070500-59070980;Right=chr13:59070833-59071169
chr13	CG	SV	59070833	59071169	17	+	.	ID=1992;Type=deletion;Left=chr13:59070500-59070980;Right=chr13:59070833-59071169
chr13	CG	SV	60451037	60452212	28	.	.	ID=1991;Type=deletion;Left=chr13:60451037-60451407+;Right=chr13:60451869-60452212+;Distance=832;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=L1M3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr13	CG	SV	60451037	60451407	28	+	.	ID=1991;Type=deletion;Left=chr13:60451037-60451407;Right=chr13:60451869-60452212
chr13	CG	SV	60451869	60452212	28	+	.	ID=1991;Type=deletion;Left=chr13:60451037-60451407;Right=chr13:60451869-60452212
chr13	CG	SV	62503490	62504109	27	.	.	ID=192;Type=probable-inversion;Left=chr13:62503490-62503564-;Right=chr13:62503672-62504109+;Distance=108;DiscordantMatePairAlignments=27;LeftRepeat=L2:LINE:L2;SegDup;RightRepeat=L2:LINE:L2;SegDup;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	62503490	62503564	27	-	.	ID=192;Type=probable-inversion;Left=chr13:62503490-62503564;Right=chr13:62503672-62504109
chr13	CG	SV	62503672	62504109	27	-	.	ID=192;Type=probable-inversion;Left=chr13:62503490-62503564;Right=chr13:62503672-62504109
chr13	CG	SV	68813467	68815978	13	.	.	ID=1985;Type=deletion;Left=chr13:68813467-68813752+;Right=chr13:68815641-68815978+;Distance=2174;DiscordantMatePairAlignments=13;LeftRepeat=L1M1:LINE:L1;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	68813467	68813752	13	+	.	ID=1985;Type=deletion;Left=chr13:68813467-68813752;Right=chr13:68815641-68815978
chr13	CG	SV	68815641	68815978	13	+	.	ID=1985;Type=deletion;Left=chr13:68813467-68813752;Right=chr13:68815641-68815978
chr13	CG	SV	72972922	72973648	11	.	.	ID=1982;Type=deletion;Left=chr13:72972922-72973295+;Right=chr13:72973250-72973648+;Distance=328;DiscordantMatePairAlignments=11;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10704972 (chr13:72972922-72973250);Frequency=0.94
chr13	CG	SV	72972922	72973295	11	+	.	ID=1982;Type=deletion;Left=chr13:72972922-72973295;Right=chr13:72973250-72973648
chr13	CG	SV	72973250	72973648	11	+	.	ID=1982;Type=deletion;Left=chr13:72972922-72973295;Right=chr13:72973250-72973648
chr13	CG	SV	77662970	77666293	47	.	.	ID=1981;Type=deletion;Left=chr13:77662970-77663354+;Right=chr13:77665838-77666293+;Distance=2868;DiscordantMatePairAlignments=47;LeftRepeat=MER21B:LTR:ERV1;RightRepeat=L1MEc:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr13	CG	SV	77662970	77663354	47	+	.	ID=1981;Type=deletion;Left=chr13:77662970-77663354;Right=chr13:77665838-77666293
chr13	CG	SV	77665838	77666293	47	+	.	ID=1981;Type=deletion;Left=chr13:77662970-77663354;Right=chr13:77665838-77666293
chr13	CG	SV	77895641	77897101	26	.	.	ID=1980;Type=deletion;Left=chr13:77895641-77896014+;Right=chr13:77896751-77897101+;Distance=1110;DiscordantMatePairAlignments=26;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71729399 (chr13:77895641-77896751);Frequency=0.53
chr13	CG	SV	77895641	77896014	26	+	.	ID=1980;Type=deletion;Left=chr13:77895641-77896014;Right=chr13:77896751-77897101
chr13	CG	SV	77896751	77897101	26	+	.	ID=1980;Type=deletion;Left=chr13:77895641-77896014;Right=chr13:77896751-77897101
chr13	CG	SV	80645256	80646001	14	.	.	ID=1976;Type=deletion;Left=chr13:80645256-80645759+;Right=chr13:80645584-80646001+;Distance=328;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67749978 (chr13:80645256-80645584);Frequency=0.94
chr13	CG	SV	80645256	80645759	14	+	.	ID=1976;Type=deletion;Left=chr13:80645256-80645759;Right=chr13:80645584-80646001
chr13	CG	SV	80645584	80646001	14	+	.	ID=1976;Type=deletion;Left=chr13:80645256-80645759;Right=chr13:80645584-80646001
chr13	CG	SV	81254786	81255409	17	.	.	ID=191;Type=probable-inversion;Left=chr13:81254786-81254877-;Right=chr13:81254977-81255409+;Distance=100;DiscordantMatePairAlignments=17;LeftRepeat=HERVL40:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	81254786	81254877	17	-	.	ID=191;Type=probable-inversion;Left=chr13:81254786-81254877;Right=chr13:81254977-81255409
chr13	CG	SV	81254977	81255409	17	-	.	ID=191;Type=probable-inversion;Left=chr13:81254786-81254877;Right=chr13:81254977-81255409
chr13	CG	SV	89660856	89663199	74	.	.	ID=1974;Type=deletion;Left=chr13:89660856-89661339+;Right=chr13:89662811-89663199+;Distance=1955;DiscordantMatePairAlignments=74;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr13	CG	SV	89660856	89661339	74	+	.	ID=1974;Type=deletion;Left=chr13:89660856-89661339;Right=chr13:89662811-89663199
chr13	CG	SV	89662811	89663199	74	+	.	ID=1974;Type=deletion;Left=chr13:89660856-89661339;Right=chr13:89662811-89663199
chr13	CG	SV	92042617	92044446	30	.	.	ID=1973;Type=deletion;Left=chr13:92042617-92042960+;Right=chr13:92044011-92044446+;Distance=1394;DiscordantMatePairAlignments=30;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_004466:+;RightGenes=NM_004466:+;XRef=;Frequency=0.00
chr13	CG	SV	92042617	92042960	30	+	.	ID=1973;Type=deletion;Left=chr13:92042617-92042960;Right=chr13:92044011-92044446
chr13	CG	SV	92044011	92044446	30	+	.	ID=1973;Type=deletion;Left=chr13:92042617-92042960;Right=chr13:92044011-92044446
chr13	CG	SV	96739659	96742590	23	.	.	ID=1970;Type=deletion;Left=chr13:96739659-96740035+;Right=chr13:96742171-96742590+;Distance=2512;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=;LeftGenes=NM_144778:+;NM_207304:+;RightGenes=NM_144778:+;NM_207304:+;XRef=;Frequency=0.00
chr13	CG	SV	96739659	96740035	23	+	.	ID=1970;Type=deletion;Left=chr13:96739659-96740035;Right=chr13:96742171-96742590
chr13	CG	SV	96742171	96742590	23	+	.	ID=1970;Type=deletion;Left=chr13:96739659-96740035;Right=chr13:96742171-96742590
chr13	CG	SV	97302622	97303315	14	.	.	ID=791;Type=tandem-duplication;Left=chr13:97302622-97302951-;Right=chr13:97303031-97303315-;Distance=364;DiscordantMatePairAlignments=14;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Tandem TGGA;RightRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Tandem GATG;Tandem period 12;Tandem period 8;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr13	CG	SV	97302622	97302951	14	-	.	ID=791;Type=tandem-duplication;Left=chr13:97302622-97302951;Right=chr13:97303031-97303315
chr13	CG	SV	97303031	97303315	14	-	.	ID=791;Type=tandem-duplication;Left=chr13:97302622-97302951;Right=chr13:97303031-97303315
chr13	CG	SV	98052256	98056691	26	.	.	ID=1968;Type=deletion;Left=chr13:98052256-98052668+;Right=chr13:98056525-98056691+;Distance=4269;DiscordantMatePairAlignments=26;LeftRepeat=AluSx:SINE:Alu;RightRepeat=(TA)n:Simple_repeat:Simple_repeat;Tandem ATATAT;Tandem period 30;LeftGenes=;RightGenes=;XRef=rs71085656 (chr13:98052256-98056525);Frequency=0.59
chr13	CG	SV	98052256	98052668	26	+	.	ID=1968;Type=deletion;Left=chr13:98052256-98052668;Right=chr13:98056525-98056691
chr13	CG	SV	98056525	98056691	26	+	.	ID=1968;Type=deletion;Left=chr13:98052256-98052668;Right=chr13:98056525-98056691
chr13	CG	SV	99929907	99930363	24	.	.	ID=790;Type=tandem-duplication;Left=chr13:99929907-99930116-;Right=chr13:99930101-99930363-;Distance=247;DiscordantMatePairAlignments=24;LeftRepeat=;RightRepeat=;LeftGenes=NM_000282:+;NM_001127692:+;RightGenes=NM_000282:+;NM_001127692:+;XRef=;Frequency=0.35
chr13	CG	SV	99929907	99930116	24	-	.	ID=790;Type=tandem-duplication;Left=chr13:99929907-99930116;Right=chr13:99930101-99930363
chr13	CG	SV	99930101	99930363	24	-	.	ID=790;Type=tandem-duplication;Left=chr13:99929907-99930116;Right=chr13:99930101-99930363
chr13	CG	SV	100692147	100694823	46	.	.	ID=1967;Type=deletion;Left=chr13:100692147-100692653+;Right=chr13:100694428-100694823+;Distance=2281;DiscordantMatePairAlignments=46;LeftRepeat=L1MEd:LINE:L1;RightRepeat=;LeftGenes=NM_052867:-;RightGenes=NM_052867:-;XRef=rs71085658 (chr13:100692147-100694428);Frequency=0.82
chr13	CG	SV	100692147	100692653	46	+	.	ID=1967;Type=deletion;Left=chr13:100692147-100692653;Right=chr13:100694428-100694823
chr13	CG	SV	100694428	100694823	46	+	.	ID=1967;Type=deletion;Left=chr13:100692147-100692653;Right=chr13:100694428-100694823
chr13	CG	SV	102729653	102730343	24	.	.	ID=1964;Type=deletion;Left=chr13:102729653-102730155+;Right=chr13:102729968-102730343+;Distance=315;DiscordantMatePairAlignments=24;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67914131 (chr13:102729644-102729959);Frequency=0.65
chr13	CG	SV	102729653	102730155	24	+	.	ID=1964;Type=deletion;Left=chr13:102729653-102730155;Right=chr13:102729968-102730343
chr13	CG	SV	102729968	102730343	24	+	.	ID=1964;Type=deletion;Left=chr13:102729653-102730155;Right=chr13:102729968-102730343
chr13	CG	SV	102807864	102808587	18	.	.	ID=1963;Type=deletion;Left=chr13:102807864-102808297+;Right=chr13:102808183-102808587+;Distance=319;DiscordantMatePairAlignments=18;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6145207 (chr13:102807855-102808174);Frequency=0.41
chr13	CG	SV	102807864	102808297	18	+	.	ID=1963;Type=deletion;Left=chr13:102807864-102808297;Right=chr13:102808183-102808587
chr13	CG	SV	102808183	102808587	18	+	.	ID=1963;Type=deletion;Left=chr13:102807864-102808297;Right=chr13:102808183-102808587
chr13	CG	SV	107745025	107750274	38	.	.	ID=1958;Type=deletion;Left=chr13:107745025-107745235+;Right=chr13:107749811-107750274+;Distance=4786;DiscordantMatePairAlignments=38;LeftRepeat=L1MB5:LINE:L1;RightRepeat=L1MB5:LINE:L1;LeftGenes=NM_001145645:+;NM_006573:+;RightGenes=NM_001145645:+;NM_006573:+;XRef=;Frequency=0.24
chr13	CG	SV	107745025	107745235	38	+	.	ID=1958;Type=deletion;Left=chr13:107745025-107745235;Right=chr13:107749811-107750274
chr13	CG	SV	107749811	107750274	38	+	.	ID=1958;Type=deletion;Left=chr13:107745025-107745235;Right=chr13:107749811-107750274
chr13	CG	SV	108159749	108160819	64	.	.	ID=1957;Type=deletion;Left=chr13:108159749-108160232+;Right=chr13:108160441-108160819+;Distance=692;DiscordantMatePairAlignments=64;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_015011:+;RightGenes=NM_015011:+;XRef=;Frequency=0.53
chr13	CG	SV	108159749	108160232	64	+	.	ID=1957;Type=deletion;Left=chr13:108159749-108160232;Right=chr13:108160441-108160819
chr13	CG	SV	108160441	108160819	64	+	.	ID=1957;Type=deletion;Left=chr13:108159749-108160232;Right=chr13:108160441-108160819
chr13	CG	SV	110502511	110503213	81	.	.	ID=1952;Type=deletion;Left=chr13:110502511-110503024+;Right=chr13:110502967-110503213+;Distance=456;DiscordantMatePairAlignments=81;LeftRepeat=Self chain;Tandem period 134;Tandem period 27;RightRepeat=MER39:LTR:ERV1;Self chain;Tandem period 134;Tandem period 27;LeftGenes=;RightGenes=;XRef=rs71085666 (chr13:110502520-110502896);Frequency=0.94
chr13	CG	SV	110502511	110503024	81	+	.	ID=1952;Type=deletion;Left=chr13:110502511-110503024;Right=chr13:110502967-110503213
chr13	CG	SV	110502967	110503213	81	+	.	ID=1952;Type=deletion;Left=chr13:110502511-110503024;Right=chr13:110502967-110503213
chr13	CG	SV	112469276	112470094	19	.	.	ID=1950;Type=deletion;Left=chr13:112469276-112469749+;Right=chr13:112469872-112470094+;Distance=596;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;Tandem period 159;Tandem period 40;Tandem period 79;RightRepeat=Self chain;LeftGenes=NM_015205:+;NM_032189:+;RightGenes=NM_015205:+;NM_032189:+;XRef=;Frequency=0.12
chr13	CG	SV	112469276	112469749	19	+	.	ID=1950;Type=deletion;Left=chr13:112469276-112469749;Right=chr13:112469872-112470094
chr13	CG	SV	112469872	112470094	19	+	.	ID=1950;Type=deletion;Left=chr13:112469276-112469749;Right=chr13:112469872-112470094
chr13	CG	SV	112878688	112878858	24	.	.	ID=786;Type=tandem-duplication;Left=chr13:112878688-112878765-;Right=chr13:112878737-112878858-;Distance=93;DiscordantMatePairAlignments=24;LeftRepeat=MLT1B:LTR:MaLR;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	112878688	112878765	24	-	.	ID=786;Type=tandem-duplication;Left=chr13:112878688-112878765;Right=chr13:112878737-112878858
chr13	CG	SV	112878737	112878858	24	-	.	ID=786;Type=tandem-duplication;Left=chr13:112878688-112878765;Right=chr13:112878737-112878858
chr13	CG	SV	114008694	114010423	122	.	.	ID=1949;Type=deletion;Left=chr13:114008694-114009233+;Right=chr13:114009982-114010423+;Distance=1288;DiscordantMatePairAlignments=122;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr13	CG	SV	114008694	114009233	122	+	.	ID=1949;Type=deletion;Left=chr13:114008694-114009233;Right=chr13:114009982-114010423
chr13	CG	SV	114009982	114010423	122	+	.	ID=1949;Type=deletion;Left=chr13:114008694-114009233;Right=chr13:114009982-114010423
chr14	CG	SV	20605984	20606736	10	.	.	ID=1948;Type=deletion;Left=chr14:20605984-20606393+;Right=chr14:20606310-20606736+;Distance=326;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6145263 (chr14:20605984-20606310);Frequency=0.88
chr14	CG	SV	20605984	20606393	10	+	.	ID=1948;Type=deletion;Left=chr14:20605984-20606393;Right=chr14:20606310-20606736
chr14	CG	SV	20606310	20606736	10	+	.	ID=1948;Type=deletion;Left=chr14:20605984-20606393;Right=chr14:20606310-20606736
chr14	CG	SV	21100026	21101888	34	.	.	ID=1947;Type=deletion;Left=chr14:21100026-21100517+;Right=chr14:21101672-21101888+;Distance=1646;DiscordantMatePairAlignments=34;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr14	CG	SV	21100026	21100517	34	+	.	ID=1947;Type=deletion;Left=chr14:21100026-21100517;Right=chr14:21101672-21101888
chr14	CG	SV	21101672	21101888	34	+	.	ID=1947;Type=deletion;Left=chr14:21100026-21100517;Right=chr14:21101672-21101888
chr14	CG	SV	21951507	21952540	113	.	.	ID=1946;Type=deletion;Left=chr14:21951507-21951981+;Right=chr14:21952100-21952540+;Distance=593;DiscordantMatePairAlignments=113;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66716556 (chr14:21951506-21952099);Frequency=0.94
chr14	CG	SV	21951507	21951981	113	+	.	ID=1946;Type=deletion;Left=chr14:21951507-21951981;Right=chr14:21952100-21952540
chr14	CG	SV	21952100	21952540	113	+	.	ID=1946;Type=deletion;Left=chr14:21951507-21951981;Right=chr14:21952100-21952540
chr14	CG	SV	22122064	22123869	115	.	.	ID=1945;Type=deletion;Left=chr14:22122064-22122370+;Right=chr14:22123393-22123869+;Distance=1329;DiscordantMatePairAlignments=115;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_001344:-;RightGenes=NM_001344:-;XRef=;Frequency=0.00
chr14	CG	SV	22122064	22122370	115	+	.	ID=1945;Type=deletion;Left=chr14:22122064-22122370;Right=chr14:22123393-22123869
chr14	CG	SV	22123393	22123869	115	+	.	ID=1945;Type=deletion;Left=chr14:22122064-22122370;Right=chr14:22123393-22123869
chr14	CG	SV	22174969	22177911	23	.	.	ID=1944;Type=deletion;Left=chr14:22174969-22175442+;Right=chr14:22177804-22177911+;Distance=2835;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr14	CG	SV	22174969	22175442	23	+	.	ID=1944;Type=deletion;Left=chr14:22174969-22175442;Right=chr14:22177804-22177911
chr14	CG	SV	22177804	22177911	23	+	.	ID=1944;Type=deletion;Left=chr14:22174969-22175442;Right=chr14:22177804-22177911
chr14	CG	SV	23439032	23439455	11	.	.	ID=783;Type=tandem-duplication;Left=chr14:23439032-23439250-;Right=chr14:23439255-23439455-;Distance=205;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=MER21C:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr14	CG	SV	23439032	23439250	11	-	.	ID=783;Type=tandem-duplication;Left=chr14:23439032-23439250;Right=chr14:23439255-23439455
chr14	CG	SV	23439255	23439455	11	-	.	ID=783;Type=tandem-duplication;Left=chr14:23439032-23439250;Right=chr14:23439255-23439455
chr14	CG	SV	25353716	25355028	11	.	.	ID=1942;Type=deletion;Left=chr14:25353716-25354200+;Right=chr14:25354642-25355028+;Distance=926;DiscordantMatePairAlignments=11;LeftRepeat=L1PA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr14	CG	SV	25353716	25354200	11	+	.	ID=1942;Type=deletion;Left=chr14:25353716-25354200;Right=chr14:25354642-25355028
chr14	CG	SV	25354642	25355028	11	+	.	ID=1942;Type=deletion;Left=chr14:25353716-25354200;Right=chr14:25354642-25355028
chr14	CG	SV	28797800	28799072	89	.	.	ID=1941;Type=deletion;Left=chr14:28797800-28798194+;Right=chr14:28798564-28799072+;Distance=764;DiscordantMatePairAlignments=89;LeftRepeat=;RightRepeat=L1MC3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr14	CG	SV	28797800	28798194	89	+	.	ID=1941;Type=deletion;Left=chr14:28797800-28798194;Right=chr14:28798564-28799072
chr14	CG	SV	28798564	28799072	89	+	.	ID=1941;Type=deletion;Left=chr14:28797800-28798194;Right=chr14:28798564-28799072
chr14	CG	SV	31012760	31013526	10	.	.	ID=1938;Type=deletion;Left=chr14:31012760-31013205+;Right=chr14:31013085-31013526+;Distance=325;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35663119 (chr14:31012746-31013071);Frequency=0.82
chr14	CG	SV	31012760	31013205	10	+	.	ID=1938;Type=deletion;Left=chr14:31012760-31013205;Right=chr14:31013085-31013526
chr14	CG	SV	31013085	31013526	10	+	.	ID=1938;Type=deletion;Left=chr14:31012760-31013205;Right=chr14:31013085-31013526
chr14	CG	SV	33359799	33360584	19	.	.	ID=1937;Type=deletion;Left=chr14:33359799-33360243+;Right=chr14:33360138-33360584+;Distance=339;DiscordantMatePairAlignments=19;LeftRepeat=AluYb9:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67229762 (chr14:33359799-33360138);Frequency=1.00
chr14	CG	SV	33359799	33360243	19	+	.	ID=1937;Type=deletion;Left=chr14:33359799-33360243;Right=chr14:33360138-33360584
chr14	CG	SV	33360138	33360584	19	+	.	ID=1937;Type=deletion;Left=chr14:33359799-33360243;Right=chr14:33360138-33360584
chr14	CG	SV	39168150	39170267	55	.	.	ID=1936;Type=deletion;Left=chr14:39168150-39168585+;Right=chr14:39169972-39170267+;Distance=1822;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72037908 (chr14:39168142-39169964);Frequency=0.59
chr14	CG	SV	39168150	39168585	55	+	.	ID=1936;Type=deletion;Left=chr14:39168150-39168585;Right=chr14:39169972-39170267
chr14	CG	SV	39169972	39170267	55	+	.	ID=1936;Type=deletion;Left=chr14:39168150-39168585;Right=chr14:39169972-39170267
chr14	CG	SV	41556085	41556739	11	.	.	ID=1935;Type=deletion;Left=chr14:41556085-41556535+;Right=chr14:41556400-41556739+;Distance=315;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10529794 (chr14:41556085-41556400);Frequency=0.88
chr14	CG	SV	41556085	41556535	11	+	.	ID=1935;Type=deletion;Left=chr14:41556085-41556535;Right=chr14:41556400-41556739
chr14	CG	SV	41556400	41556739	11	+	.	ID=1935;Type=deletion;Left=chr14:41556085-41556535;Right=chr14:41556400-41556739
chr14	CG	SV	42442661	42443544	39	.	.	ID=1934;Type=deletion;Left=chr14:42442661-42443092+;Right=chr14:42443073-42443544+;Distance=412;DiscordantMatePairAlignments=39;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=L1MCa:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr14	CG	SV	42442661	42443092	39	+	.	ID=1934;Type=deletion;Left=chr14:42442661-42443092;Right=chr14:42443073-42443544
chr14	CG	SV	42443073	42443544	39	+	.	ID=1934;Type=deletion;Left=chr14:42442661-42443092;Right=chr14:42443073-42443544
chr14	CG	SV	45647688	45648415	17	.	.	ID=1933;Type=deletion;Left=chr14:45647688-45648067+;Right=chr14:45648008-45648415+;Distance=320;DiscordantMatePairAlignments=17;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71105263 (chr14:45647688-45648008);Frequency=1.00
chr14	CG	SV	45647688	45648067	17	+	.	ID=1933;Type=deletion;Left=chr14:45647688-45648067;Right=chr14:45648008-45648415
chr14	CG	SV	45648008	45648415	17	+	.	ID=1933;Type=deletion;Left=chr14:45647688-45648067;Right=chr14:45648008-45648415
chr14	CG	SV	49261483	49262106	36	.	.	ID=782;Type=tandem-duplication;Left=chr14:49261483-49261790-;Right=chr14:49261812-49262106-;Distance=316;DiscordantMatePairAlignments=36;LeftRepeat=L3:LINE:CR1;RightRepeat=;LeftGenes=NM_172193:+;RightGenes=NM_172193:+;XRef=;Frequency=1.00
chr14	CG	SV	49261483	49261790	36	-	.	ID=782;Type=tandem-duplication;Left=chr14:49261483-49261790;Right=chr14:49261812-49262106
chr14	CG	SV	49261812	49262106	36	-	.	ID=782;Type=tandem-duplication;Left=chr14:49261483-49261790;Right=chr14:49261812-49262106
chr14	CG	SV	51448094	51449104	147	.	.	ID=1931;Type=deletion;Left=chr14:51448094-51448498+;Right=chr14:51448653-51449104+;Distance=559;DiscordantMatePairAlignments=147;LeftRepeat=AluJo:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_053064:+;RightGenes=NM_053064:+;XRef=rs72381763 (chr14:51448094-51448653);Frequency=0.12
chr14	CG	SV	51448094	51448498	147	+	.	ID=1931;Type=deletion;Left=chr14:51448094-51448498;Right=chr14:51448653-51449104
chr14	CG	SV	51448653	51449104	147	+	.	ID=1931;Type=deletion;Left=chr14:51448094-51448498;Right=chr14:51448653-51449104
chr14	CG	SV	56100980	56101708	12	.	.	ID=1929;Type=deletion;Left=chr14:56100980-56101443+;Right=chr14:56101333-56101708+;Distance=353;DiscordantMatePairAlignments=12;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=L1MEd:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71101789 (chr14:56100939-56101292);Frequency=1.00
chr14	CG	SV	56100980	56101443	12	+	.	ID=1929;Type=deletion;Left=chr14:56100980-56101443;Right=chr14:56101333-56101708
chr14	CG	SV	56101333	56101708	12	+	.	ID=1929;Type=deletion;Left=chr14:56100980-56101443;Right=chr14:56101333-56101708
chr14	CG	SV	59411151	59413280	16	.	.	ID=1928;Type=deletion;Left=chr14:59411151-59411472+;Right=chr14:59412995-59413280+;Distance=1844;DiscordantMatePairAlignments=16;LeftRepeat=L1MA3:LINE:L1;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr14	CG	SV	59411151	59411472	16	+	.	ID=1928;Type=deletion;Left=chr14:59411151-59411472;Right=chr14:59412995-59413280
chr14	CG	SV	59412995	59413280	16	+	.	ID=1928;Type=deletion;Left=chr14:59411151-59411472;Right=chr14:59412995-59413280
chr14	CG	SV	64358654	64359267	10	.	.	ID=188;Type=distal-duplication;Left=chr14:64358654-64358740-;Right=chr14:64358847-64359267+;Distance=107;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=(CA)n:Simple_repeat:Simple_repeat;Tandem CA;LeftGenes=NM_000347:-;NM_001024858:-;RightGenes=NM_000347:-;NM_001024858:-;XRef=;Frequency=1.00
chr14	CG	SV	64358654	64358740	10	-	.	ID=188;Type=distal-duplication;Left=chr14:64358654-64358740;Right=chr14:64358847-64359267
chr14	CG	SV	64358847	64359267	10	-	.	ID=188;Type=distal-duplication;Left=chr14:64358654-64358740;Right=chr14:64358847-64359267
chr14	CG	SV	64358833	64358873	11	.	.	ID=3504;Type=distal-duplication;Left=chr14:64358833-64359240+;Right=chr14:64358766-64358873-;Distance=40;DiscordantMatePairAlignments=11;LeftRepeat=(TC)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=NM_000347:-;NM_001024858:-;RightGenes=NM_000347:-;NM_001024858:-;XRef=;Frequency=1.00
chr14	CG	SV	64358833	64359240	11	+	.	ID=3504;Type=distal-duplication;Left=chr14:64358833-64359240;Right=chr14:64358766-64358873
chr14	CG	SV	64358766	64358873	11	+	.	ID=3504;Type=distal-duplication;Left=chr14:64358833-64359240;Right=chr14:64358766-64358873
chr14	CG	SV	64430149	64433712	149	.	.	ID=1926;Type=deletion;Left=chr14:64430149-64430601+;Right=chr14:64433303-64433712+;Distance=3154;DiscordantMatePairAlignments=149;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71948642 (chr14:64430149-64433302);Frequency=1.00
chr14	CG	SV	64430149	64430601	149	+	.	ID=1926;Type=deletion;Left=chr14:64430149-64430601;Right=chr14:64433303-64433712
chr14	CG	SV	64433303	64433712	149	+	.	ID=1926;Type=deletion;Left=chr14:64430149-64430601;Right=chr14:64433303-64433712
chr14	CG	SV	65327965	65328160	17	.	.	ID=781;Type=tandem-duplication;Left=chr14:65327965-65328047-;Right=chr14:65328043-65328160-;Distance=113;DiscordantMatePairAlignments=17;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr14	CG	SV	65327965	65328047	17	-	.	ID=781;Type=tandem-duplication;Left=chr14:65327965-65328047;Right=chr14:65328043-65328160
chr14	CG	SV	65328043	65328160	17	-	.	ID=781;Type=tandem-duplication;Left=chr14:65327965-65328047;Right=chr14:65328043-65328160
chr14	CG	SV	67672900	67673915	76	.	.	ID=1924;Type=deletion;Left=chr14:67672900-67673273+;Right=chr14:67673598-67673915+;Distance=698;DiscordantMatePairAlignments=76;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_002877:+;NM_133509:+;NM_133510:+;RightGenes=NM_002877:+;NM_133509:+;NM_133510:+;XRef=rs67710758 (chr14:67672811-67673511);Frequency=0.94
chr14	CG	SV	67672900	67673273	76	+	.	ID=1924;Type=deletion;Left=chr14:67672900-67673273;Right=chr14:67673598-67673915
chr14	CG	SV	67673598	67673915	76	+	.	ID=1924;Type=deletion;Left=chr14:67672900-67673273;Right=chr14:67673598-67673915
chr14	CG	SV	69757587	69759561	39	.	.	ID=1923;Type=deletion;Left=chr14:69757587-69757922+;Right=chr14:69759208-69759561+;Distance=1621;DiscordantMatePairAlignments=39;LeftRepeat=L1M:LINE:L1;Self chain;RightRepeat=MER53:DNA:DNA;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr14	CG	SV	69757587	69757922	39	+	.	ID=1923;Type=deletion;Left=chr14:69757587-69757922;Right=chr14:69759208-69759561
chr14	CG	SV	69759208	69759561	39	+	.	ID=1923;Type=deletion;Left=chr14:69757587-69757922;Right=chr14:69759208-69759561
chr14	CG	SV	75883527	75884360	120	.	.	ID=1922;Type=deletion;Left=chr14:75883527-75883981+;Right=chr14:75883962-75884360+;Distance=435;DiscordantMatePairAlignments=120;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72100137 (chr14:75883527-75883962);Frequency=0.59
chr14	CG	SV	75883527	75883981	120	+	.	ID=1922;Type=deletion;Left=chr14:75883527-75883981;Right=chr14:75883962-75884360
chr14	CG	SV	75883962	75884360	120	+	.	ID=1922;Type=deletion;Left=chr14:75883527-75883981;Right=chr14:75883962-75884360
chr14	CG	SV	77897998	77898673	10	.	.	ID=1920;Type=deletion;Left=chr14:77897998-77898379+;Right=chr14:77898349-77898673+;Distance=351;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71105289 (chr14:77897998-77898349);Frequency=1.00
chr14	CG	SV	77897998	77898379	10	+	.	ID=1920;Type=deletion;Left=chr14:77897998-77898379;Right=chr14:77898349-77898673
chr14	CG	SV	77898349	77898673	10	+	.	ID=1920;Type=deletion;Left=chr14:77897998-77898379;Right=chr14:77898349-77898673
chr14	CG	SV	80538880	80539598	11	.	.	ID=1919;Type=deletion;Left=chr14:80538880-80539370+;Right=chr14:80539192-80539598+;Distance=312;DiscordantMatePairAlignments=11;LeftRepeat=L1HS:LINE:L1;Tandem T;RightRepeat=;LeftGenes=NM_000369:+;NM_001018036:+;NM_001142626:+;RightGenes=NM_000369:+;NM_001018036:+;NM_001142626:+;XRef=rs72176728 (chr14:80538868-80539180);Frequency=0.53
chr14	CG	SV	80538880	80539370	11	+	.	ID=1919;Type=deletion;Left=chr14:80538880-80539370;Right=chr14:80539192-80539598
chr14	CG	SV	80539192	80539598	11	+	.	ID=1919;Type=deletion;Left=chr14:80538880-80539370;Right=chr14:80539192-80539598
chr14	CG	SV	82705606	82706630	94	.	.	ID=1917;Type=deletion;Left=chr14:82705606-82706031+;Right=chr14:82706253-82706630+;Distance=647;DiscordantMatePairAlignments=94;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67488723 (chr14:82705606-82706253);Frequency=0.94
chr14	CG	SV	82705606	82706031	94	+	.	ID=1917;Type=deletion;Left=chr14:82705606-82706031;Right=chr14:82706253-82706630
chr14	CG	SV	82706253	82706630	94	+	.	ID=1917;Type=deletion;Left=chr14:82705606-82706031;Right=chr14:82706253-82706630
chr14	CG	SV	84208899	84209762	51	.	.	ID=1916;Type=deletion;Left=chr14:84208899-84209328+;Right=chr14:84209379-84209762+;Distance=480;DiscordantMatePairAlignments=51;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72056555 (chr14:84208899-84209378);Frequency=0.65
chr14	CG	SV	84208899	84209328	51	+	.	ID=1916;Type=deletion;Left=chr14:84208899-84209328;Right=chr14:84209379-84209762
chr14	CG	SV	84209379	84209762	51	+	.	ID=1916;Type=deletion;Left=chr14:84208899-84209328;Right=chr14:84209379-84209762
chr14	CG	SV	84484527	84484940	10	.	.	ID=779;Type=tandem-duplication;Left=chr14:84484527-84484729-;Right=chr14:84484708-84484940-;Distance=211;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr14	CG	SV	84484527	84484729	10	-	.	ID=779;Type=tandem-duplication;Left=chr14:84484527-84484729;Right=chr14:84484708-84484940
chr14	CG	SV	84484708	84484940	10	-	.	ID=779;Type=tandem-duplication;Left=chr14:84484527-84484729;Right=chr14:84484708-84484940
chr14	CG	SV	92995915	92996164	19	.	.	ID=3502;Type=probable-inversion;Left=chr14:92995915-92996351+;Right=chr14:92996064-92996164-;Distance=249;DiscordantMatePairAlignments=19;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_020818:+;RightGenes=NM_020818:+;XRef=;Frequency=1.00
chr14	CG	SV	92995915	92996351	19	+	.	ID=3502;Type=probable-inversion;Left=chr14:92995915-92996351;Right=chr14:92996064-92996164
chr14	CG	SV	92996064	92996164	19	+	.	ID=3502;Type=probable-inversion;Left=chr14:92995915-92996351;Right=chr14:92996064-92996164
chr14	CG	SV	99914767	99915481	21	.	.	ID=1913;Type=deletion;Left=chr14:99914767-99915000+;Right=chr14:99915100-99915481+;Distance=333;DiscordantMatePairAlignments=21;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001161476:+;NM_024515:+;RightGenes=NM_001161476:+;NM_024515:+;XRef=rs67432898 (chr14:99914767-99915100);Frequency=0.94
chr14	CG	SV	99914767	99915000	21	+	.	ID=1913;Type=deletion;Left=chr14:99914767-99915000;Right=chr14:99915100-99915481
chr14	CG	SV	99915100	99915481	21	+	.	ID=1913;Type=deletion;Left=chr14:99914767-99915000;Right=chr14:99915100-99915481
chr14	CG	SV	100062739	100063055	11	.	.	ID=778;Type=tandem-duplication;Left=chr14:100062739-100062883-;Right=chr14:100062956-100063055-;Distance=172;DiscordantMatePairAlignments=11;LeftRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;RightRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;LeftGenes=NM_001161476:+;NM_024515:+;RightGenes=NM_001161476:+;NM_024515:+;XRef=;Frequency=1.00
chr14	CG	SV	100062739	100062883	11	-	.	ID=778;Type=tandem-duplication;Left=chr14:100062739-100062883;Right=chr14:100062956-100063055
chr14	CG	SV	100062956	100063055	11	-	.	ID=778;Type=tandem-duplication;Left=chr14:100062739-100062883;Right=chr14:100062956-100063055
chr14	CG	SV	101060629	101061425	27	.	.	ID=1912;Type=deletion;Left=chr14:101060629-101061047+;Right=chr14:101060965-101061425+;Distance=336;DiscordantMatePairAlignments=27;LeftRepeat=MADE1:DNA:Mariner;RightRepeat=MADE1:DNA:Mariner;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr14	CG	SV	101060629	101061047	27	+	.	ID=1912;Type=deletion;Left=chr14:101060629-101061047;Right=chr14:101060965-101061425
chr14	CG	SV	101060965	101061425	27	+	.	ID=1912;Type=deletion;Left=chr14:101060629-101061047;Right=chr14:101060965-101061425
chr14	CG	SV	103432427	103432879	48	.	.	ID=777;Type=tandem-duplication;Left=chr14:103432427-103432642-;Right=chr14:103432649-103432879-;Distance=237;DiscordantMatePairAlignments=48;LeftRepeat=Self chain;Tandem period 33;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	103432427	103432642	48	-	.	ID=777;Type=tandem-duplication;Left=chr14:103432427-103432642;Right=chr14:103432649-103432879
chr14	CG	SV	103432649	103432879	48	-	.	ID=777;Type=tandem-duplication;Left=chr14:103432427-103432642;Right=chr14:103432649-103432879
chr14	CG	SV	104345041	104346077	91	.	.	ID=1910;Type=deletion;Left=chr14:104345041-104345403+;Right=chr14:104345839-104346077+;Distance=798;DiscordantMatePairAlignments=91;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;Tandem period 38;LeftGenes=;RightGenes=;XRef=rs71803557 (chr14:104344945-104345705);Frequency=0.94
chr14	CG	SV	104345041	104345403	91	+	.	ID=1910;Type=deletion;Left=chr14:104345041-104345403;Right=chr14:104345839-104346077
chr14	CG	SV	104345839	104346077	91	+	.	ID=1910;Type=deletion;Left=chr14:104345041-104345403;Right=chr14:104345839-104346077
chr14	CG	SV	105119953	105120340	11	.	.	ID=775;Type=tandem-duplication;Left=chr14:105119953-105120080-;Right=chr14:105120163-105120340-;Distance=260;DiscordantMatePairAlignments=11;LeftRepeat=SegDup;Self chain;Tandem period 20;RightRepeat=SegDup;Self chain;Tandem period 20;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	105119953	105120080	11	-	.	ID=775;Type=tandem-duplication;Left=chr14:105119953-105120080;Right=chr14:105120163-105120340
chr14	CG	SV	105120163	105120340	11	-	.	ID=775;Type=tandem-duplication;Left=chr14:105119953-105120080;Right=chr14:105120163-105120340
chr14	CG	SV	106108669	106334539	27	.	.	ID=773;Type=tandem-duplication;Left=chr14:106108669-106109116-;Right=chr14:106334111-106334539-;Distance=225423;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr14	CG	SV	106108669	106109116	27	-	.	ID=773;Type=tandem-duplication;Left=chr14:106108669-106109116;Right=chr14:106334111-106334539
chr14	CG	SV	106334111	106334539	27	-	.	ID=773;Type=tandem-duplication;Left=chr14:106108669-106109116;Right=chr14:106334111-106334539
chr14	CG	SV	106232623	106232836	73	.	.	ID=774;Type=tandem-duplication;Left=chr14:106232623-106232718-;Right=chr14:106232719-106232836-;Distance=118;DiscordantMatePairAlignments=73;LeftRepeat=Self chain;Tandem period 59;RightRepeat=Self chain;Tandem period 59;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	106232623	106232718	73	-	.	ID=774;Type=tandem-duplication;Left=chr14:106232623-106232718;Right=chr14:106232719-106232836
chr14	CG	SV	106232719	106232836	73	-	.	ID=774;Type=tandem-duplication;Left=chr14:106232623-106232718;Right=chr14:106232719-106232836
chr15	CG	SV	22390426	22391154	26	.	.	ID=1904;Type=deletion;Left=chr15:22390426-22390867+;Right=chr15:22390748-22391154+;Distance=322;DiscordantMatePairAlignments=26;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=MSTC-int:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=rs71114009 (chr15:22390410-22390732);Frequency=0.47
chr15	CG	SV	22390426	22390867	26	+	.	ID=1904;Type=deletion;Left=chr15:22390426-22390867;Right=chr15:22390748-22391154
chr15	CG	SV	22390748	22391154	26	+	.	ID=1904;Type=deletion;Left=chr15:22390426-22390867;Right=chr15:22390748-22391154
chr15	CG	SV	23497286	23504594	55	.	.	ID=770;Type=tandem-duplication;Left=chr15:23497286-23497698-;Right=chr15:23504165-23504594-;Distance=6896;DiscordantMatePairAlignments=55;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_024490:-;RightGenes=NM_024490:-;XRef=;Frequency=0.00
chr15	CG	SV	23497286	23497698	55	-	.	ID=770;Type=tandem-duplication;Left=chr15:23497286-23497698;Right=chr15:23504165-23504594
chr15	CG	SV	23504165	23504594	55	-	.	ID=770;Type=tandem-duplication;Left=chr15:23497286-23497698;Right=chr15:23504165-23504594
chr15	CG	SV	23538388	23542711	32	.	.	ID=769;Type=tandem-duplication;Left=chr15:23538388-23538771-;Right=chr15:23542374-23542711-;Distance=3940;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;RightRepeat=L1MEd:LINE:L1;Self chain;LeftGenes=NM_024490:-;RightGenes=NM_024490:-;XRef=;Frequency=0.00
chr15	CG	SV	23538388	23538771	32	-	.	ID=769;Type=tandem-duplication;Left=chr15:23538388-23538771;Right=chr15:23542374-23542711
chr15	CG	SV	23542374	23542711	32	-	.	ID=769;Type=tandem-duplication;Left=chr15:23538388-23538771;Right=chr15:23542374-23542711
chr15	CG	SV	24572589	24573316	11	.	.	ID=1903;Type=deletion;Left=chr15:24572589-24573041+;Right=chr15:24572897-24573316+;Distance=308;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=L1ME1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr15	CG	SV	24572589	24573041	11	+	.	ID=1903;Type=deletion;Left=chr15:24572589-24573041;Right=chr15:24572897-24573316
chr15	CG	SV	24572897	24573316	11	+	.	ID=1903;Type=deletion;Left=chr15:24572589-24573041;Right=chr15:24572897-24573316
chr15	CG	SV	27198771	27199737	112	.	.	ID=1902;Type=deletion;Left=chr15:27198771-27199207+;Right=chr15:27199193-27199737+;Distance=422;DiscordantMatePairAlignments=112;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=L1MEc:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs67495753 (chr15:27198766-27199188);Frequency=1.00
chr15	CG	SV	27198771	27199207	112	+	.	ID=1902;Type=deletion;Left=chr15:27198771-27199207;Right=chr15:27199193-27199737
chr15	CG	SV	27199193	27199737	112	+	.	ID=1902;Type=deletion;Left=chr15:27198771-27199207;Right=chr15:27199193-27199737
chr15	CG	SV	32796325	32797088	30	.	.	ID=1901;Type=deletion;Left=chr15:32796325-32796729+;Right=chr15:32796660-32797088+;Distance=335;DiscordantMatePairAlignments=30;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71114022 (chr15:32796325-32796660);Frequency=1.00
chr15	CG	SV	32796325	32796729	30	+	.	ID=1901;Type=deletion;Left=chr15:32796325-32796729;Right=chr15:32796660-32797088
chr15	CG	SV	32796660	32797088	30	+	.	ID=1901;Type=deletion;Left=chr15:32796325-32796729;Right=chr15:32796660-32797088
chr15	CG	SV	37054308	37055084	14	.	.	ID=1897;Type=deletion;Left=chr15:37054308-37054727+;Right=chr15:37054662-37055084+;Distance=354;DiscordantMatePairAlignments=14;LeftRepeat=(TTA)n:Simple_repeat:Simple_repeat;Tandem TTA;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10705729 (chr15:37054296-37054650);Frequency=0.94
chr15	CG	SV	37054308	37054727	14	+	.	ID=1897;Type=deletion;Left=chr15:37054308-37054727;Right=chr15:37054662-37055084
chr15	CG	SV	37054662	37055084	14	+	.	ID=1897;Type=deletion;Left=chr15:37054308-37054727;Right=chr15:37054662-37055084
chr15	CG	SV	38609286	38611186	47	.	.	ID=1895;Type=deletion;Left=chr15:38609286-38609669+;Right=chr15:38610947-38611186+;Distance=1661;DiscordantMatePairAlignments=47;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr15	CG	SV	38609286	38609669	47	+	.	ID=1895;Type=deletion;Left=chr15:38609286-38609669;Right=chr15:38610947-38611186
chr15	CG	SV	38610947	38611186	47	+	.	ID=1895;Type=deletion;Left=chr15:38609286-38609669;Right=chr15:38610947-38611186
chr15	CG	SV	39653307	39657647	12	.	.	ID=1886;Type=deletion;Left=chr15:39653307-39654054+;Right=chr15:39657377-39657647+;Distance=4070;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_006293:+;RightGenes=NM_006293:+;XRef=;Frequency=0.24
chr15	CG	SV	39653307	39654054	12	+	.	ID=1886;Type=deletion;Left=chr15:39653307-39654054;Right=chr15:39657377-39657647
chr15	CG	SV	39657377	39657647	12	+	.	ID=1886;Type=deletion;Left=chr15:39653307-39654054;Right=chr15:39657377-39657647
chr15	CG	SV	41447733	41448519	20	.	.	ID=1884;Type=deletion;Left=chr15:41447733-41448186+;Right=chr15:41448059-41448519+;Distance=326;DiscordantMatePairAlignments=20;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_152455:-;RightGenes=NM_152455:-;XRef=rs10705561 (chr15:41447733-41448059);Frequency=0.88
chr15	CG	SV	41447733	41448186	20	+	.	ID=1884;Type=deletion;Left=chr15:41447733-41448186;Right=chr15:41448059-41448519
chr15	CG	SV	41448059	41448519	20	+	.	ID=1884;Type=deletion;Left=chr15:41447733-41448186;Right=chr15:41448059-41448519
chr15	CG	SV	43855272	43856046	46	.	.	ID=1882;Type=deletion;Left=chr15:43855272-43855615+;Right=chr15:43855622-43856046+;Distance=350;DiscordantMatePairAlignments=46;LeftRepeat=L1MEa:LINE:L1;Tandem T;RightRepeat=L1MEa:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67712655 (chr15:43855272-43855622);Frequency=1.00
chr15	CG	SV	43855272	43855615	46	+	.	ID=1882;Type=deletion;Left=chr15:43855272-43855615;Right=chr15:43855622-43856046
chr15	CG	SV	43855622	43856046	46	+	.	ID=1882;Type=deletion;Left=chr15:43855272-43855615;Right=chr15:43855622-43856046
chr15	CG	SV	50312486	50313278	12	.	.	ID=1880;Type=deletion;Left=chr15:50312486-50312911+;Right=chr15:50312819-50313278+;Distance=333;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_018728:-;RightGenes=NM_018728:-;XRef=rs67247224 (chr15:50312486-50312819);Frequency=1.00
chr15	CG	SV	50312486	50312911	12	+	.	ID=1880;Type=deletion;Left=chr15:50312486-50312911;Right=chr15:50312819-50313278
chr15	CG	SV	50312819	50313278	12	+	.	ID=1880;Type=deletion;Left=chr15:50312486-50312911;Right=chr15:50312819-50313278
chr15	CG	SV	53005516	53012188	33	.	.	ID=1879;Type=deletion;Left=chr15:53005516-53005889+;Right=chr15:53011725-53012188+;Distance=6209;DiscordantMatePairAlignments=33;LeftRepeat=L1M1:LINE:L1;RightRepeat=L1M3c:LINE:L1;L1ME3:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71114035 (chr15:53005522-53011731);Frequency=1.00
chr15	CG	SV	53005516	53005889	33	+	.	ID=1879;Type=deletion;Left=chr15:53005516-53005889;Right=chr15:53011725-53012188
chr15	CG	SV	53011725	53012188	33	+	.	ID=1879;Type=deletion;Left=chr15:53005516-53005889;Right=chr15:53011725-53012188
chr15	CG	SV	57500190	57500857	13	.	.	ID=1876;Type=deletion;Left=chr15:57500190-57500698+;Right=chr15:57500521-57500857+;Distance=331;DiscordantMatePairAlignments=13;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67321160 (chr15:57500178-57500509);Frequency=1.00
chr15	CG	SV	57500190	57500698	13	+	.	ID=1876;Type=deletion;Left=chr15:57500190-57500698;Right=chr15:57500521-57500857
chr15	CG	SV	57500521	57500857	13	+	.	ID=1876;Type=deletion;Left=chr15:57500190-57500698;Right=chr15:57500521-57500857
chr15	CG	SV	60972653	60972778	21	.	.	ID=765;Type=tandem-duplication;Left=chr15:60972653-60972730-;Right=chr15:60972701-60972778-;Distance=48;DiscordantMatePairAlignments=21;LeftRepeat=L1MEe:LINE:L1;Self chain;Tandem period 24;RightRepeat=Self chain;Tandem period 20;Tandem period 24;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr15	CG	SV	60972653	60972730	21	-	.	ID=765;Type=tandem-duplication;Left=chr15:60972653-60972730;Right=chr15:60972701-60972778
chr15	CG	SV	60972701	60972778	21	-	.	ID=765;Type=tandem-duplication;Left=chr15:60972653-60972730;Right=chr15:60972701-60972778
chr15	CG	SV	65321533	65322343	26	.	.	ID=1873;Type=deletion;Left=chr15:65321533-65321984+;Right=chr15:65321867-65322343+;Distance=334;DiscordantMatePairAlignments=26;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_024666:-;RightGenes=NM_024666:-;XRef=rs72322625 (chr15:65321533-65321867);Frequency=0.41
chr15	CG	SV	65321533	65321984	26	+	.	ID=1873;Type=deletion;Left=chr15:65321533-65321984;Right=chr15:65321867-65322343
chr15	CG	SV	65321867	65322343	26	+	.	ID=1873;Type=deletion;Left=chr15:65321533-65321984;Right=chr15:65321867-65322343
chr15	CG	SV	66213062	66216376	63	.	.	ID=1872;Type=deletion;Left=chr15:66213062-66213497+;Right=chr15:66215987-66216376+;Distance=2925;DiscordantMatePairAlignments=63;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_016166:+;RightGenes=NM_016166:+;XRef=rs67675605 (chr15:66213056-66215981);Frequency=1.00
chr15	CG	SV	66213062	66213497	63	+	.	ID=1872;Type=deletion;Left=chr15:66213062-66213497;Right=chr15:66215987-66216376
chr15	CG	SV	66215987	66216376	63	+	.	ID=1872;Type=deletion;Left=chr15:66213062-66213497;Right=chr15:66215987-66216376
chr15	CG	SV	69804361	69804974	46	.	.	ID=1867;Type=deletion;Left=chr15:69804361-69804752+;Right=chr15:69804721-69804974+;Distance=360;DiscordantMatePairAlignments=46;LeftRepeat=L2:LINE:L2;Self chain;Tandem period 180;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_024817:+;RightGenes=NM_024817:+;XRef=rs71114044 (chr15:69804361-69804721);Frequency=1.00
chr15	CG	SV	69804361	69804752	46	+	.	ID=1867;Type=deletion;Left=chr15:69804361-69804752;Right=chr15:69804721-69804974
chr15	CG	SV	69804721	69804974	46	+	.	ID=1867;Type=deletion;Left=chr15:69804361-69804752;Right=chr15:69804721-69804974
chr15	CG	SV	75697922	75698771	64	.	.	ID=1865;Type=deletion;Left=chr15:75697922-75698382+;Right=chr15:75698296-75698771+;Distance=374;DiscordantMatePairAlignments=64;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_032808:-;RightGenes=NM_032808:-;XRef=rs35529068 (chr15:75697916-75698290);Frequency=1.00
chr15	CG	SV	75697922	75698382	64	+	.	ID=1865;Type=deletion;Left=chr15:75697922-75698382;Right=chr15:75698296-75698771
chr15	CG	SV	75698296	75698771	64	+	.	ID=1865;Type=deletion;Left=chr15:75697922-75698382;Right=chr15:75698296-75698771
chr15	CG	SV	75778530	75779145	12	.	.	ID=763;Type=tandem-duplication;Left=chr15:75778530-75778675-;Right=chr15:75778858-75779145-;Distance=470;DiscordantMatePairAlignments=12;LeftRepeat=MIR:SINE:MIR;Self chain;Tandem period 31;Tandem period 64;RightRepeat=Self chain;Tandem period 31;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr15	CG	SV	75778530	75778675	12	-	.	ID=763;Type=tandem-duplication;Left=chr15:75778530-75778675;Right=chr15:75778858-75779145
chr15	CG	SV	75778858	75779145	12	-	.	ID=763;Type=tandem-duplication;Left=chr15:75778530-75778675;Right=chr15:75778858-75779145
chr15	CG	SV	77592036	77592607	23	.	.	ID=1864;Type=deletion;Left=chr15:77592036-77592538+;Right=chr15:77592395-77592607+;Distance=359;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;Tandem period 359;RightRepeat=Self chain;Tandem period 359;LeftGenes=;RightGenes=;XRef=rs6145645 (chr15:77591688-77592047);Frequency=0.76
chr15	CG	SV	77592036	77592538	23	+	.	ID=1864;Type=deletion;Left=chr15:77592036-77592538;Right=chr15:77592395-77592607
chr15	CG	SV	77592395	77592607	23	+	.	ID=1864;Type=deletion;Left=chr15:77592036-77592538;Right=chr15:77592395-77592607
chr15	CG	SV	81564887	81565723	21	.	.	ID=1859;Type=deletion;Left=chr15:81564887-81565205+;Right=chr15:81565216-81565723+;Distance=329;DiscordantMatePairAlignments=21;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72179054 (chr15:81564887-81565216);Frequency=0.65
chr15	CG	SV	81564887	81565205	21	+	.	ID=1859;Type=deletion;Left=chr15:81564887-81565205;Right=chr15:81565216-81565723
chr15	CG	SV	81565216	81565723	21	+	.	ID=1859;Type=deletion;Left=chr15:81564887-81565205;Right=chr15:81565216-81565723
chr15	CG	SV	85501172	85501798	55	.	.	ID=1858;Type=deletion;Left=chr15:85501172-85501662+;Right=chr15:85501591-85501798+;Distance=419;DiscordantMatePairAlignments=55;LeftRepeat=Tandem TTCC;Tandem period 28;Tandem period 43;Tandem period 71;polypyrimidine:Low_complexity:Low_complexity;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem period 28;LeftGenes=;RightGenes=;XRef=rs67982659 (chr15:85501027-85501436);Frequency=0.71
chr15	CG	SV	85501172	85501662	55	+	.	ID=1858;Type=deletion;Left=chr15:85501172-85501662;Right=chr15:85501591-85501798
chr15	CG	SV	85501591	85501798	55	+	.	ID=1858;Type=deletion;Left=chr15:85501172-85501662;Right=chr15:85501591-85501798
chr15	CG	SV	88974985	88975645	18	.	.	ID=1857;Type=deletion;Left=chr15:88974985-88975427+;Right=chr15:88975318-88975645+;Distance=333;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=;LeftGenes=NM_001042574:+;NM_022769:+;RightGenes=NM_001042574:+;NM_022769:+;XRef=rs71987260 (chr15:88974978-88975311);Frequency=1.00
chr15	CG	SV	88974985	88975427	18	+	.	ID=1857;Type=deletion;Left=chr15:88974985-88975427;Right=chr15:88975318-88975645
chr15	CG	SV	88975318	88975645	18	+	.	ID=1857;Type=deletion;Left=chr15:88974985-88975427;Right=chr15:88975318-88975645
chr15	CG	SV	89782584	89790576	25	.	.	ID=1856;Type=complex;Left=chr15:89782584-89783058+;Right=chr15:89790272-89790576+;Distance=7688;DiscordantMatePairAlignments=25;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr15	CG	SV	89782584	89783058	25	+	.	ID=1856;Type=complex;Left=chr15:89782584-89783058;Right=chr15:89790272-89790576
chr15	CG	SV	89790272	89790576	25	+	.	ID=1856;Type=complex;Left=chr15:89782584-89783058;Right=chr15:89790272-89790576
chr15	CG	SV	89784126	89790621	16	.	.	ID=762;Type=complex;Left=chr15:89784126-89784464-;Right=chr15:89790270-89790621-;Distance=6157;DiscordantMatePairAlignments=16;LeftRepeat=L1MEb:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr15	CG	SV	89784126	89784464	16	-	.	ID=762;Type=complex;Left=chr15:89784126-89784464;Right=chr15:89790270-89790621
chr15	CG	SV	89790270	89790621	16	-	.	ID=762;Type=complex;Left=chr15:89784126-89784464;Right=chr15:89790270-89790621
chr15	CG	SV	91316802	91317551	26	.	.	ID=1855;Type=deletion;Left=chr15:91316802-91317189+;Right=chr15:91317115-91317551+;Distance=313;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001271:+;RightGenes=NM_001271:+;XRef=rs67178621 (chr15:91316802-91317115);Frequency=0.94
chr15	CG	SV	91316802	91317189	26	+	.	ID=1855;Type=deletion;Left=chr15:91316802-91317189;Right=chr15:91317115-91317551
chr15	CG	SV	91317115	91317551	26	+	.	ID=1855;Type=deletion;Left=chr15:91316802-91317189;Right=chr15:91317115-91317551
chr15	CG	SV	96634540	96635370	33	.	.	ID=1853;Type=deletion;Left=chr15:96634540-96634765+;Right=chr15:96634949-96635370+;Distance=409;DiscordantMatePairAlignments=33;LeftRepeat=;RightRepeat=L1PA17:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr15	CG	SV	96634540	96634765	33	+	.	ID=1853;Type=deletion;Left=chr15:96634540-96634765;Right=chr15:96634949-96635370
chr15	CG	SV	96634949	96635370	33	+	.	ID=1853;Type=deletion;Left=chr15:96634540-96634765;Right=chr15:96634949-96635370
chr15	CG	SV	96717592	96718589	40	.	.	ID=1852;Type=deletion;Left=chr15:96717592-96717788+;Right=chr15:96718158-96718589+;Distance=566;DiscordantMatePairAlignments=40;LeftRepeat=L1MC:LINE:L1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67424211 (chr15:96717594-96718160);Frequency=0.71
chr15	CG	SV	96717592	96717788	40	+	.	ID=1852;Type=deletion;Left=chr15:96717592-96717788;Right=chr15:96718158-96718589
chr15	CG	SV	96718158	96718589	40	+	.	ID=1852;Type=deletion;Left=chr15:96717592-96717788;Right=chr15:96718158-96718589
chr15	CG	SV	98869276	98870087	59	.	.	ID=1851;Type=deletion;Left=chr15:98869276-98869578+;Right=chr15:98869841-98870087+;Distance=565;DiscordantMatePairAlignments=59;LeftRepeat=Self chain;Tandem period 63;RightRepeat=Self chain;Tandem period 63;LeftGenes=NM_178842:-;RightGenes=NM_178842:-;XRef=rs72451132 (chr15:98869262-98869701);Frequency=1.00
chr15	CG	SV	98869276	98869578	59	+	.	ID=1851;Type=deletion;Left=chr15:98869276-98869578;Right=chr15:98869841-98870087
chr15	CG	SV	98869841	98870087	59	+	.	ID=1851;Type=deletion;Left=chr15:98869276-98869578;Right=chr15:98869841-98870087
chr15	CG	SV	99067886	99068316	10	.	.	ID=760;Type=tandem-duplication;Left=chr15:99067886-99068059-;Right=chr15:99068089-99068316-;Distance=257;DiscordantMatePairAlignments=10;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGGAGG;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr15	CG	SV	99067886	99068059	10	-	.	ID=760;Type=tandem-duplication;Left=chr15:99067886-99068059;Right=chr15:99068089-99068316
chr15	CG	SV	99068089	99068316	10	-	.	ID=760;Type=tandem-duplication;Left=chr15:99067886-99068059;Right=chr15:99068089-99068316
chr15	CG	SV	99270604	99271313	11	.	.	ID=1850;Type=deletion;Left=chr15:99270604-99271026+;Right=chr15:99270913-99271313+;Distance=309;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;RightRepeat=MER5A:DNA:MER1_type;LeftGenes=NM_000693:+;RightGenes=NM_000693:+;XRef=rs10523872 (chr15:99270604-99270913);Frequency=0.76
chr15	CG	SV	99270604	99271026	11	+	.	ID=1850;Type=deletion;Left=chr15:99270604-99271026;Right=chr15:99270913-99271313
chr15	CG	SV	99270913	99271313	11	+	.	ID=1850;Type=deletion;Left=chr15:99270604-99271026;Right=chr15:99270913-99271313
chr15	CG	SV	99844154	100131539	80	.	.	ID=759;Type=tandem-duplication;Left=chr15:99844154-99844519-;Right=chr15:100131161-100131539-;Distance=287020;DiscordantMatePairAlignments=80;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=NM_002570:-;NM_138319:-;NM_138320:-;NM_138321:-;NM_138322:-;NM_138323:-;NM_138324:-;NM_138325:-;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	99844154	99844519	80	-	.	ID=759;Type=tandem-duplication;Left=chr15:99844154-99844519;Right=chr15:100131161-100131539
chr15	CG	SV	100131161	100131539	80	-	.	ID=759;Type=tandem-duplication;Left=chr15:99844154-99844519;Right=chr15:100131161-100131539
chr15	CG	SV	99968989	99983555	97	.	.	ID=3498;Type=probable-inversion;Left=chr15:99968989-99969398+;Right=chr15:99983254-99983555-;Distance=14566;DiscordantMatePairAlignments=97;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	99968989	99969398	97	+	.	ID=3498;Type=probable-inversion;Left=chr15:99968989-99969398;Right=chr15:99983254-99983555
chr15	CG	SV	99983254	99983555	97	+	.	ID=3498;Type=probable-inversion;Left=chr15:99968989-99969398;Right=chr15:99983254-99983555
chr15	CG	SV	99981960	100040145	147	.	.	ID=184;Type=probable-inversion;Left=chr15:99981960-99982419-;Right=chr15:100039690-100040145+;Distance=57271;DiscordantMatePairAlignments=147;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=NM_152334:-;XRef=;Frequency=0.00
chr15	CG	SV	99981960	99982419	147	-	.	ID=184;Type=probable-inversion;Left=chr15:99981960-99982419;Right=chr15:100039690-100040145
chr15	CG	SV	100039690	100040145	147	-	.	ID=184;Type=probable-inversion;Left=chr15:99981960-99982419;Right=chr15:100039690-100040145
chr16	CG	SV	808488	808927	10	.	.	ID=758;Type=tandem-duplication;Left=chr16:808488-808697-;Right=chr16:808798-808927-;Distance=230;DiscordantMatePairAlignments=10;LeftRepeat=MIR:SINE:MIR;Self chain;RightRepeat=(ATGGTG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr16	CG	SV	808488	808697	10	-	.	ID=758;Type=tandem-duplication;Left=chr16:808488-808697;Right=chr16:808798-808927
chr16	CG	SV	808798	808927	10	-	.	ID=758;Type=tandem-duplication;Left=chr16:808488-808697;Right=chr16:808798-808927
chr16	CG	SV	1362901	1364497	44	.	.	ID=1847;Type=deletion;Left=chr16:1362901-1363211+;Right=chr16:1364219-1364497+;Distance=1318;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;Tandem period 55;RightRepeat=Self chain;LeftGenes=NM_023076:-;RightGenes=NM_023076:-;XRef=;Frequency=1.00
chr16	CG	SV	1362901	1363211	44	+	.	ID=1847;Type=deletion;Left=chr16:1362901-1363211;Right=chr16:1364219-1364497
chr16	CG	SV	1364219	1364497	44	+	.	ID=1847;Type=deletion;Left=chr16:1362901-1363211;Right=chr16:1364219-1364497
chr16	CG	SV	11591259	11593184	22	.	.	ID=1845;Type=deletion;Left=chr16:11591259-11591697+;Right=chr16:11592820-11593184+;Distance=1561;DiscordantMatePairAlignments=22;LeftRepeat=AluJo:SINE:Alu;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr16	CG	SV	11591259	11591697	22	+	.	ID=1845;Type=deletion;Left=chr16:11591259-11591697;Right=chr16:11592820-11593184
chr16	CG	SV	11592820	11593184	22	+	.	ID=1845;Type=deletion;Left=chr16:11591259-11591697;Right=chr16:11592820-11593184
chr16	CG	SV	14360737	14361483	47	.	.	ID=1844;Type=deletion;Left=chr16:14360737-14361183+;Right=chr16:14361155-14361483+;Distance=418;DiscordantMatePairAlignments=47;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=rs72460419 (chr16:14360736-14361154);Frequency=0.00
chr16	CG	SV	14360737	14361183	47	+	.	ID=1844;Type=deletion;Left=chr16:14360737-14361183;Right=chr16:14361155-14361483
chr16	CG	SV	14361155	14361483	47	+	.	ID=1844;Type=deletion;Left=chr16:14360737-14361183;Right=chr16:14361155-14361483
chr16	CG	SV	14488263	33858181	188	.	.	ID=183;Type=complex;Left=chr16:14488263-14488376-;Right=chr16:33857677-33858181+;Distance=19369301;DiscordantMatePairAlignments=188;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=NM_001134477:-;NM_002582:-;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	14488263	14488376	188	-	.	ID=183;Type=complex;Left=chr16:14488263-14488376;Right=chr16:33857677-33858181
chr16	CG	SV	33857677	33858181	188	-	.	ID=183;Type=complex;Left=chr16:14488263-14488376;Right=chr16:33857677-33858181
chr16	CG	SV	14488484	33857185	16	.	.	ID=3497;Type=complex;Left=chr16:14488484-14488580+;Right=chr16:33856888-33857185-;Distance=19368701;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=NM_001134477:-;NM_002582:-;RightGenes=;XRef=;Frequency=0.53
chr16	CG	SV	14488484	14488580	16	+	.	ID=3497;Type=complex;Left=chr16:14488484-14488580;Right=chr16:33856888-33857185
chr16	CG	SV	33856888	33857185	16	+	.	ID=3497;Type=complex;Left=chr16:14488484-14488580;Right=chr16:33856888-33857185
chr16	CG	SV	16841867	16848325	85	.	.	ID=1843;Type=deletion;Left=chr16:16841867-16842329+;Right=chr16:16847918-16848325+;Distance=6051;DiscordantMatePairAlignments=85;LeftRepeat=Self chain;RightRepeat=L1ME3B:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71962966 (chr16:16841879-16847930);Frequency=0.94
chr16	CG	SV	16841867	16842329	85	+	.	ID=1843;Type=deletion;Left=chr16:16841867-16842329;Right=chr16:16847918-16848325
chr16	CG	SV	16847918	16848325	85	+	.	ID=1843;Type=deletion;Left=chr16:16841867-16842329;Right=chr16:16847918-16848325
chr16	CG	SV	20150871	20199992	25	.	.	ID=754;Type=tandem-duplication;Left=chr16:20150871-20151282-;Right=chr16:20199636-20199992-;Distance=48710;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	20150871	20151282	25	-	.	ID=754;Type=tandem-duplication;Left=chr16:20150871-20151282;Right=chr16:20199636-20199992
chr16	CG	SV	20199636	20199992	25	-	.	ID=754;Type=tandem-duplication;Left=chr16:20150871-20151282;Right=chr16:20199636-20199992
chr16	CG	SV	20686055	20686801	22	.	.	ID=1840;Type=deletion;Left=chr16:20686055-20686513+;Right=chr16:20686375-20686801+;Distance=320;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_005622:+;NM_202000:+;RightGenes=NM_005622:+;NM_202000:+;XRef=rs66468257 (chr16:20686042-20686362);Frequency=0.88
chr16	CG	SV	20686055	20686513	22	+	.	ID=1840;Type=deletion;Left=chr16:20686055-20686513;Right=chr16:20686375-20686801
chr16	CG	SV	20686375	20686801	22	+	.	ID=1840;Type=deletion;Left=chr16:20686055-20686513;Right=chr16:20686375-20686801
chr16	CG	SV	22955276	22957434	149	.	.	ID=1838;Type=deletion;Left=chr16:22955276-22955645+;Right=chr16:22957032-22957434+;Distance=1756;DiscordantMatePairAlignments=149;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67692612 (chr16:22955282-22957032);Frequency=0.88
chr16	CG	SV	22955276	22955645	149	+	.	ID=1838;Type=deletion;Left=chr16:22955276-22955645;Right=chr16:22957032-22957434
chr16	CG	SV	22957032	22957434	149	+	.	ID=1838;Type=deletion;Left=chr16:22955276-22955645;Right=chr16:22957032-22957434
chr16	CG	SV	23436054	23436583	10	.	.	ID=1837;Type=deletion;Left=chr16:23436054-23436582+;Right=chr16:23436367-23436583+;Distance=313;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	23436054	23436582	10	+	.	ID=1837;Type=deletion;Left=chr16:23436054-23436582;Right=chr16:23436367-23436583
chr16	CG	SV	23436367	23436583	10	+	.	ID=1837;Type=deletion;Left=chr16:23436054-23436582;Right=chr16:23436367-23436583
chr16	CG	SV	24413204	24633756	25	.	.	ID=753;Type=tandem-duplication;Left=chr16:24413204-24413589-;Right=chr16:24633479-24633756-;Distance=220167;DiscordantMatePairAlignments=25;LeftRepeat=AluJ:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	24413204	24413589	25	-	.	ID=753;Type=tandem-duplication;Left=chr16:24413204-24413589;Right=chr16:24633479-24633756
chr16	CG	SV	24633479	24633756	25	-	.	ID=753;Type=tandem-duplication;Left=chr16:24413204-24413589;Right=chr16:24633479-24633756
chr16	CG	SV	26292533	26293838	31	.	.	ID=752;Type=tandem-duplication;Left=chr16:26292533-26292934-;Right=chr16:26293341-26293838-;Distance=904;DiscordantMatePairAlignments=31;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;Tandem GATG;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	26292533	26292934	31	-	.	ID=752;Type=tandem-duplication;Left=chr16:26292533-26292934;Right=chr16:26293341-26293838
chr16	CG	SV	26293341	26293838	31	-	.	ID=752;Type=tandem-duplication;Left=chr16:26292533-26292934;Right=chr16:26293341-26293838
chr16	CG	SV	26515529	26516304	11	.	.	ID=1836;Type=deletion;Left=chr16:26515529-26515955+;Right=chr16:26515871-26516304+;Distance=342;DiscordantMatePairAlignments=11;LeftRepeat=L1MD3:LINE:L1;Self chain;RightRepeat=L1MD3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71136521 (chr16:26515538-26515880);Frequency=1.00
chr16	CG	SV	26515529	26515955	11	+	.	ID=1836;Type=deletion;Left=chr16:26515529-26515955;Right=chr16:26515871-26516304
chr16	CG	SV	26515871	26516304	11	+	.	ID=1836;Type=deletion;Left=chr16:26515529-26515955;Right=chr16:26515871-26516304
chr16	CG	SV	29716404	30966163	107	.	.	ID=751;Type=tandem-duplication;Left=chr16:29716404-29716800-;Right=chr16:30965775-30966163-;Distance=1249363;DiscordantMatePairAlignments=107;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	29716404	29716800	107	-	.	ID=751;Type=tandem-duplication;Left=chr16:29716404-29716800;Right=chr16:30965775-30966163
chr16	CG	SV	30965775	30966163	107	-	.	ID=751;Type=tandem-duplication;Left=chr16:29716404-29716800;Right=chr16:30965775-30966163
chr16	CG	SV	33829643	33831036	10	.	.	ID=1832;Type=deletion;Left=chr16:33829643-33829902+;Right=chr16:33830566-33831036+;Distance=923;DiscordantMatePairAlignments=10;LeftRepeat=L1MEc:LINE:L1;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	33829643	33829902	10	+	.	ID=1832;Type=deletion;Left=chr16:33829643-33829902;Right=chr16:33830566-33831036
chr16	CG	SV	33830566	33831036	10	+	.	ID=1832;Type=deletion;Left=chr16:33829643-33829902;Right=chr16:33830566-33831036
chr16	CG	SV	33834282	33840532	17	.	.	ID=1831;Type=deletion;Left=chr16:33834282-33834639+;Right=chr16:33840258-33840532+;Distance=5976;DiscordantMatePairAlignments=17;LeftRepeat=L1MA9:LINE:L1;SegDup;Self chain;RightRepeat=L1MA9:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr16	CG	SV	33834282	33834639	17	+	.	ID=1831;Type=deletion;Left=chr16:33834282-33834639;Right=chr16:33840258-33840532
chr16	CG	SV	33840258	33840532	17	+	.	ID=1831;Type=deletion;Left=chr16:33834282-33834639;Right=chr16:33840258-33840532
chr16	CG	SV	33852431	33853296	13	.	.	ID=1830;Type=deletion;Left=chr16:33852431-33852773+;Right=chr16:33852872-33853296+;Distance=441;DiscordantMatePairAlignments=13;LeftRepeat=SegDup;Self chain;RightRepeat=AluSq:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	33852431	33852773	13	+	.	ID=1830;Type=deletion;Left=chr16:33852431-33852773;Right=chr16:33852872-33853296
chr16	CG	SV	33852872	33853296	13	+	.	ID=1830;Type=deletion;Left=chr16:33852431-33852773;Right=chr16:33852872-33853296
chr16	CG	SV	33857186	33857940	39	.	.	ID=1829;Type=complex;Left=chr16:33857186-33857587+;Right=chr16:33857587-33857940+;Distance=401;DiscordantMatePairAlignments=39;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	33857186	33857587	39	+	.	ID=1829;Type=complex;Left=chr16:33857186-33857587;Right=chr16:33857587-33857940
chr16	CG	SV	33857587	33857940	39	+	.	ID=1829;Type=complex;Left=chr16:33857186-33857587;Right=chr16:33857587-33857940
chr16	CG	SV	33859793	33863532	89	.	.	ID=748;Type=complex;Left=chr16:33859793-33860096-;Right=chr16:33863163-33863532-;Distance=3436;DiscordantMatePairAlignments=89;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	33859793	33860096	89	-	.	ID=748;Type=complex;Left=chr16:33859793-33860096;Right=chr16:33863163-33863532
chr16	CG	SV	33863163	33863532	89	-	.	ID=748;Type=complex;Left=chr16:33859793-33860096;Right=chr16:33863163-33863532
chr16	CG	SV	47523376	47524114	17	.	.	ID=745;Type=tandem-duplication;Left=chr16:47523376-47523678-;Right=chr16:47523856-47524114-;Distance=436;DiscordantMatePairAlignments=17;LeftRepeat=(CA)n:Simple_repeat:Simple_repeat;Tandem period 16;RightRepeat=(CA)n:Simple_repeat:Simple_repeat;Tandem period 16;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr16	CG	SV	47523376	47523678	17	-	.	ID=745;Type=tandem-duplication;Left=chr16:47523376-47523678;Right=chr16:47523856-47524114
chr16	CG	SV	47523856	47524114	17	-	.	ID=745;Type=tandem-duplication;Left=chr16:47523376-47523678;Right=chr16:47523856-47524114
chr16	CG	SV	56282896	56285814	122	.	.	ID=1754;Type=deletion;Left=chr16:56282896-56283225+;Right=chr16:56285347-56285814+;Distance=2451;DiscordantMatePairAlignments=122;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr16	CG	SV	56282896	56283225	122	+	.	ID=1754;Type=deletion;Left=chr16:56282896-56283225;Right=chr16:56285347-56285814
chr16	CG	SV	56285347	56285814	122	+	.	ID=1754;Type=deletion;Left=chr16:56282896-56283225;Right=chr16:56285347-56285814
chr16	CG	SV	59467546	59471859	15	.	.	ID=1752;Type=deletion;Left=chr16:59467546-59467805+;Right=chr16:59471433-59471859+;Distance=3887;DiscordantMatePairAlignments=15;LeftRepeat=L1HS:LINE:L1;RightRepeat=MER65C:LTR:ERV1;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr16	CG	SV	59467546	59467805	15	+	.	ID=1752;Type=deletion;Left=chr16:59467546-59467805;Right=chr16:59471433-59471859
chr16	CG	SV	59471433	59471859	15	+	.	ID=1752;Type=deletion;Left=chr16:59467546-59467805;Right=chr16:59471433-59471859
chr16	CG	SV	64077513	64078285	11	.	.	ID=1750;Type=deletion;Left=chr16:64077513-64077973+;Right=chr16:64077834-64078285+;Distance=321;DiscordantMatePairAlignments=11;LeftRepeat=AluYb9:SINE:Alu;RightRepeat=;LeftGenes=NR_027755:-;RightGenes=NR_027755:-;XRef=;Frequency=0.35
chr16	CG	SV	64077513	64077973	11	+	.	ID=1750;Type=deletion;Left=chr16:64077513-64077973;Right=chr16:64077834-64078285
chr16	CG	SV	64077834	64078285	11	+	.	ID=1750;Type=deletion;Left=chr16:64077513-64077973;Right=chr16:64077834-64078285
chr16	CG	SV	68318980	68320735	23	.	.	ID=76;Type=distal-duplication;Left=chr16:68318980-68319307-;Right=chr16:68320423-68320735+;Distance=1116;DiscordantMatePairAlignments=23;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr16	CG	SV	68318980	68319307	23	-	.	ID=76;Type=distal-duplication;Left=chr16:68318980-68319307;Right=chr16:68320423-68320735
chr16	CG	SV	68320423	68320735	23	-	.	ID=76;Type=distal-duplication;Left=chr16:68318980-68319307;Right=chr16:68320423-68320735
chr16	CG	SV	68319632	68320388	75	.	.	ID=3409;Type=distal-duplication;Left=chr16:68319632-68319918+;Right=chr16:68319994-68320388-;Distance=756;DiscordantMatePairAlignments=75;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr16	CG	SV	68319632	68319918	75	+	.	ID=3409;Type=distal-duplication;Left=chr16:68319632-68319918;Right=chr16:68319994-68320388
chr16	CG	SV	68319994	68320388	75	+	.	ID=3409;Type=distal-duplication;Left=chr16:68319632-68319918;Right=chr16:68319994-68320388
chr16	CG	SV	68411780	68416524	24	.	.	ID=672;Type=tandem-duplication;Left=chr16:68411780-68412186-;Right=chr16:68416396-68416524-;Distance=4338;DiscordantMatePairAlignments=24;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=Self chain;LeftGenes=NM_007014:+;NM_199423:+;RightGenes=NM_007014:+;NM_199423:+;XRef=;Frequency=0.41
chr16	CG	SV	68411780	68412186	24	-	.	ID=672;Type=tandem-duplication;Left=chr16:68411780-68412186;Right=chr16:68416396-68416524
chr16	CG	SV	68416396	68416524	24	-	.	ID=672;Type=tandem-duplication;Left=chr16:68411780-68412186;Right=chr16:68416396-68416524
chr16	CG	SV	69535300	69537861	189	.	.	ID=1747;Type=deletion;Left=chr16:69535300-69535779+;Right=chr16:69537395-69537861+;Distance=2095;DiscordantMatePairAlignments=189;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_032821:-;RightGenes=NM_032821:-;XRef=rs67363752 (chr16:69535300-69537395);Frequency=1.00
chr16	CG	SV	69535300	69535779	189	+	.	ID=1747;Type=deletion;Left=chr16:69535300-69535779;Right=chr16:69537395-69537861
chr16	CG	SV	69537395	69537861	189	+	.	ID=1747;Type=deletion;Left=chr16:69535300-69535779;Right=chr16:69537395-69537861
chr16	CG	SV	69721878	69722565	28	.	.	ID=1745;Type=complex;Left=chr16:69721878-69722323+;Right=chr16:69722205-69722565+;Distance=327;DiscordantMatePairAlignments=28;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_017558:-;NM_032821:-;RightGenes=NM_017558:-;NM_032821:-;XRef=rs10527113 (chr16:69721864-69722191);Frequency=1.00
chr16	CG	SV	69721878	69722323	28	+	.	ID=1745;Type=complex;Left=chr16:69721878-69722323;Right=chr16:69722205-69722565
chr16	CG	SV	69722205	69722565	28	+	.	ID=1745;Type=complex;Left=chr16:69721878-69722323;Right=chr16:69722205-69722565
chr16	CG	SV	69721878	69722674	17	.	.	ID=1746;Type=complex;Left=chr16:69721878-69722186+;Right=chr16:69722205-69722674+;Distance=327;DiscordantMatePairAlignments=17;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_017558:-;NM_032821:-;RightGenes=NM_017558:-;NM_032821:-;XRef=rs66885572 (chr16:69721878-69722205);Frequency=1.00
chr16	CG	SV	69721878	69722186	17	+	.	ID=1746;Type=complex;Left=chr16:69721878-69722186;Right=chr16:69722205-69722674
chr16	CG	SV	69722205	69722674	17	+	.	ID=1746;Type=complex;Left=chr16:69721878-69722186;Right=chr16:69722205-69722674
chr16	CG	SV	73987385	73988320	26	.	.	ID=1741;Type=deletion;Left=chr16:73987385-73987717+;Right=chr16:73988227-73988320+;Distance=842;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_006324:-;RightGenes=NM_006324:-;XRef=;Frequency=0.82
chr16	CG	SV	73987385	73987717	26	+	.	ID=1741;Type=deletion;Left=chr16:73987385-73987717;Right=chr16:73988227-73988320
chr16	CG	SV	73988227	73988320	26	+	.	ID=1741;Type=deletion;Left=chr16:73987385-73987717;Right=chr16:73988227-73988320
chr16	CG	SV	75096634	75101986	124	.	.	ID=1740;Type=deletion;Left=chr16:75096634-75097054+;Right=chr16:75101526-75101986+;Distance=4892;DiscordantMatePairAlignments=124;LeftRepeat=L1ME1:LINE:L1;Self chain;RightRepeat=L1MB8:LINE:L1;Self chain;LeftGenes=NM_033401:+;NM_138994:+;RightGenes=NM_033401:+;NM_138994:+;XRef=rs67420665 (chr16:75096635-75101526);Frequency=1.00
chr16	CG	SV	75096634	75097054	124	+	.	ID=1740;Type=deletion;Left=chr16:75096634-75097054;Right=chr16:75101526-75101986
chr16	CG	SV	75101526	75101986	124	+	.	ID=1740;Type=deletion;Left=chr16:75096634-75097054;Right=chr16:75101526-75101986
chr16	CG	SV	76613704	76838182	50	.	.	ID=669;Type=tandem-duplication;Left=chr16:76613704-76614057-;Right=chr16:76837772-76838182-;Distance=224125;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=;LeftGenes=NM_005752:+;RightGenes=NM_016373:+;NM_130791:+;XRef=;Frequency=0.00
chr16	CG	SV	76613704	76614057	50	-	.	ID=669;Type=tandem-duplication;Left=chr16:76613704-76614057;Right=chr16:76837772-76838182
chr16	CG	SV	76837772	76838182	50	-	.	ID=669;Type=tandem-duplication;Left=chr16:76613704-76614057;Right=chr16:76837772-76838182
chr16	CG	SV	79026145	79026930	14	.	.	ID=1739;Type=deletion;Left=chr16:79026145-79026470+;Right=chr16:79026458-79026930+;Distance=313;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr16	CG	SV	79026145	79026470	14	+	.	ID=1739;Type=deletion;Left=chr16:79026145-79026470;Right=chr16:79026458-79026930
chr16	CG	SV	79026458	79026930	14	+	.	ID=1739;Type=deletion;Left=chr16:79026145-79026470;Right=chr16:79026458-79026930
chr16	CG	SV	79731412	79732086	59	.	.	ID=1737;Type=deletion;Left=chr16:79731412-79731879+;Right=chr16:79731919-79732086+;Distance=507;DiscordantMatePairAlignments=59;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_052892:-;RightGenes=NM_052892:-;XRef=rs71136601 (chr16:79731342-79731850);Frequency=0.94
chr16	CG	SV	79731412	79731879	59	+	.	ID=1737;Type=deletion;Left=chr16:79731412-79731879;Right=chr16:79731919-79732086
chr16	CG	SV	79731919	79732086	59	+	.	ID=1737;Type=deletion;Left=chr16:79731412-79731879;Right=chr16:79731919-79732086
chr16	CG	SV	80355715	80356702	93	.	.	ID=668;Type=tandem-duplication;Left=chr16:80355715-80356159-;Right=chr16:80356269-80356702-;Distance=543;DiscordantMatePairAlignments=93;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr16	CG	SV	80355715	80356159	93	-	.	ID=668;Type=tandem-duplication;Left=chr16:80355715-80356159;Right=chr16:80356269-80356702
chr16	CG	SV	80356269	80356702	93	-	.	ID=668;Type=tandem-duplication;Left=chr16:80355715-80356159;Right=chr16:80356269-80356702
chr16	CG	SV	83745720	83747559	33	.	.	ID=74;Type=distal-duplication;Left=chr16:83745720-83746170-;Right=chr16:83747348-83747559+;Distance=1178;DiscordantMatePairAlignments=33;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	83745720	83746170	33	-	.	ID=74;Type=distal-duplication;Left=chr16:83745720-83746170;Right=chr16:83747348-83747559
chr16	CG	SV	83747348	83747559	33	-	.	ID=74;Type=distal-duplication;Left=chr16:83745720-83746170;Right=chr16:83747348-83747559
chr16	CG	SV	83746438	83747116	19	.	.	ID=3407;Type=distal-duplication;Left=chr16:83746438-83746874+;Right=chr16:83746973-83747116-;Distance=678;DiscordantMatePairAlignments=19;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	83746438	83746874	19	+	.	ID=3407;Type=distal-duplication;Left=chr16:83746438-83746874;Right=chr16:83746973-83747116
chr16	CG	SV	83746973	83747116	19	+	.	ID=3407;Type=distal-duplication;Left=chr16:83746438-83746874;Right=chr16:83746973-83747116
chr16	CG	SV	84841822	84842506	26	.	.	ID=1735;Type=deletion;Left=chr16:84841822-84842306+;Right=chr16:84842130-84842506+;Distance=308;DiscordantMatePairAlignments=26;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66683203 (chr16:84841809-84842117);Frequency=1.00
chr16	CG	SV	84841822	84842306	26	+	.	ID=1735;Type=deletion;Left=chr16:84841822-84842306;Right=chr16:84842130-84842506
chr16	CG	SV	84842130	84842506	26	+	.	ID=1735;Type=deletion;Left=chr16:84841822-84842306;Right=chr16:84842130-84842506
chr17	CG	SV	20653	22045	137	.	.	ID=1732;Type=deletion;Left=chr17:20653-21050+;Right=chr17:21793-22045+;Distance=1140;DiscordantMatePairAlignments=137;LeftRepeat=(CCGGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 32;Tandem period 98;RightRepeat=SUBTEL_sa:Satellite:Satellite;Self chain;Tandem period 32;Tandem period 98;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr17	CG	SV	20653	21050	137	+	.	ID=1732;Type=deletion;Left=chr17:20653-21050;Right=chr17:21793-22045
chr17	CG	SV	21793	22045	137	+	.	ID=1732;Type=deletion;Left=chr17:20653-21050;Right=chr17:21793-22045
chr17	CG	SV	203146	203497	42	.	.	ID=667;Type=tandem-duplication;Left=chr17:203146-203311-;Right=chr17:203329-203497-;Distance=186;DiscordantMatePairAlignments=42;LeftRepeat=Self chain;Tandem period 97;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr17	CG	SV	203146	203311	42	-	.	ID=667;Type=tandem-duplication;Left=chr17:203146-203311;Right=chr17:203329-203497
chr17	CG	SV	203329	203497	42	-	.	ID=667;Type=tandem-duplication;Left=chr17:203146-203311;Right=chr17:203329-203497
chr17	CG	SV	210580	211225	37	.	.	ID=1729;Type=deletion;Left=chr17:210580-211152+;Right=chr17:210884-211225+;Distance=304;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;Tandem period 38;LeftGenes=;RightGenes=;XRef=rs71140412 (chr17:210497-210839);Frequency=1.00
chr17	CG	SV	210580	211152	37	+	.	ID=1729;Type=deletion;Left=chr17:210580-211152;Right=chr17:210884-211225
chr17	CG	SV	210884	211225	37	+	.	ID=1729;Type=deletion;Left=chr17:210580-211152;Right=chr17:210884-211225
chr17	CG	SV	213293	214110	13	.	.	ID=1728;Type=deletion;Left=chr17:213293-213629+;Right=chr17:213634-214110+;Distance=341;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=(GTGTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 20;LeftGenes=;RightGenes=;XRef=rs71145713 (chr17:213284-213648);Frequency=0.65
chr17	CG	SV	213293	213629	13	+	.	ID=1728;Type=deletion;Left=chr17:213293-213629;Right=chr17:213634-214110
chr17	CG	SV	213634	214110	13	+	.	ID=1728;Type=deletion;Left=chr17:213293-213629;Right=chr17:213634-214110
chr17	CG	SV	670609	671931	14	.	.	ID=1727;Type=deletion;Left=chr17:670609-671077+;Right=chr17:671748-671931+;Distance=1139;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem period 312;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_022463:-;RightGenes=NM_022463:-;XRef=;Frequency=0.94
chr17	CG	SV	670609	671077	14	+	.	ID=1727;Type=deletion;Left=chr17:670609-671077;Right=chr17:671748-671931
chr17	CG	SV	671748	671931	14	+	.	ID=1727;Type=deletion;Left=chr17:670609-671077;Right=chr17:671748-671931
chr17	CG	SV	685748	686669	95	.	.	ID=1726;Type=deletion;Left=chr17:685748-686189+;Right=chr17:686149-686669+;Distance=401;DiscordantMatePairAlignments=95;LeftRepeat=Self chain;Tandem period 133;Tandem period 45;RightRepeat=Self chain;Tandem period 133;Tandem period 45;LeftGenes=NM_022463:-;RightGenes=NM_022463:-;XRef=rs71371583 (chr17:685701-686103);Frequency=0.65
chr17	CG	SV	685748	686189	95	+	.	ID=1726;Type=deletion;Left=chr17:685748-686189;Right=chr17:686149-686669
chr17	CG	SV	686149	686669	95	+	.	ID=1726;Type=deletion;Left=chr17:685748-686189;Right=chr17:686149-686669
chr17	CG	SV	1068694	1069964	28	.	.	ID=73;Type=probable-inversion;Left=chr17:1068694-1069130-;Right=chr17:1069768-1069964+;Distance=638;DiscordantMatePairAlignments=28;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr17	CG	SV	1068694	1069130	28	-	.	ID=73;Type=probable-inversion;Left=chr17:1068694-1069130;Right=chr17:1069768-1069964
chr17	CG	SV	1069768	1069964	28	-	.	ID=73;Type=probable-inversion;Left=chr17:1068694-1069130;Right=chr17:1069768-1069964
chr17	CG	SV	1601419	1602537	39	.	.	ID=1723;Type=deletion;Left=chr17:1601419-1601838+;Right=chr17:1602150-1602537+;Distance=731;DiscordantMatePairAlignments=39;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSq:SINE:Alu;LeftGenes=NM_000934:+;NM_001165920:+;NM_001165921:+;RightGenes=NM_000934:+;NM_001165920:+;NM_001165921:+;XRef=;Frequency=0.47
chr17	CG	SV	1601419	1601838	39	+	.	ID=1723;Type=deletion;Left=chr17:1601419-1601838;Right=chr17:1602150-1602537
chr17	CG	SV	1602150	1602537	39	+	.	ID=1723;Type=deletion;Left=chr17:1601419-1601838;Right=chr17:1602150-1602537
chr17	CG	SV	8187408	8189026	63	.	.	ID=1720;Type=deletion;Left=chr17:8187408-8187773+;Right=chr17:8188764-8189026+;Distance=1356;DiscordantMatePairAlignments=63;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_153007:+;RightGenes=NM_153007:+;XRef=;Frequency=0.29
chr17	CG	SV	8187408	8187773	63	+	.	ID=1720;Type=deletion;Left=chr17:8187408-8187773;Right=chr17:8188764-8189026
chr17	CG	SV	8188764	8189026	63	+	.	ID=1720;Type=deletion;Left=chr17:8187408-8187773;Right=chr17:8188764-8189026
chr17	CG	SV	13161223	13162028	31	.	.	ID=1718;Type=deletion;Left=chr17:13161223-13161641+;Right=chr17:13161550-13162028+;Distance=327;DiscordantMatePairAlignments=31;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66560097 (chr17:13161223-13161550);Frequency=0.88
chr17	CG	SV	13161223	13161641	31	+	.	ID=1718;Type=deletion;Left=chr17:13161223-13161641;Right=chr17:13161550-13162028
chr17	CG	SV	13161550	13162028	31	+	.	ID=1718;Type=deletion;Left=chr17:13161223-13161641;Right=chr17:13161550-13162028
chr17	CG	SV	14130636	14132737	27	.	.	ID=1716;Type=deletion;Left=chr17:14130636-14131089+;Right=chr17:14132281-14132737+;Distance=1645;DiscordantMatePairAlignments=27;LeftRepeat=MER49:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68129134 (chr17:14130635-14132280);Frequency=1.00
chr17	CG	SV	14130636	14131089	27	+	.	ID=1716;Type=deletion;Left=chr17:14130636-14131089;Right=chr17:14132281-14132737
chr17	CG	SV	14132281	14132737	27	+	.	ID=1716;Type=deletion;Left=chr17:14130636-14131089;Right=chr17:14132281-14132737
chr17	CG	SV	17171098	17172315	211	.	.	ID=1714;Type=deletion;Left=chr17:17171098-17171743+;Right=chr17:17171974-17172315+;Distance=876;DiscordantMatePairAlignments=211;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_020201:+;RightGenes=NM_020201:+;XRef=rs66473553 (chr17:17171082-17171958);Frequency=0.82
chr17	CG	SV	17171098	17171743	211	+	.	ID=1714;Type=deletion;Left=chr17:17171098-17171743;Right=chr17:17171974-17172315
chr17	CG	SV	17171974	17172315	211	+	.	ID=1714;Type=deletion;Left=chr17:17171098-17171743;Right=chr17:17171974-17172315
chr17	CG	SV	18731878	18733255	61	.	.	ID=1713;Type=deletion;Left=chr17:18731878-18732270+;Right=chr17:18732903-18733255+;Distance=1025;DiscordantMatePairAlignments=61;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=NM_002767:+;RightGenes=NM_002767:+;XRef=rs67043860 (chr17:18731878-18732903);Frequency=0.94
chr17	CG	SV	18731878	18732270	61	+	.	ID=1713;Type=deletion;Left=chr17:18731878-18732270;Right=chr17:18732903-18733255
chr17	CG	SV	18732903	18733255	61	+	.	ID=1713;Type=deletion;Left=chr17:18731878-18732270;Right=chr17:18732903-18733255
chr17	CG	SV	19512502	19513368	13	.	.	ID=1711;Type=deletion;Left=chr17:19512502-19512576+;Right=chr17:19512912-19513368+;Distance=410;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000382:+;NM_001031806:+;RightGenes=NM_000382:+;NM_001031806:+;XRef=;Frequency=0.53
chr17	CG	SV	19512502	19512576	13	+	.	ID=1711;Type=deletion;Left=chr17:19512502-19512576;Right=chr17:19512912-19513368
chr17	CG	SV	19512912	19513368	13	+	.	ID=1711;Type=deletion;Left=chr17:19512502-19512576;Right=chr17:19512912-19513368
chr17	CG	SV	21261870	21263907	197	.	.	ID=1710;Type=deletion;Left=chr17:21261870-21262430+;Right=chr17:21263414-21263907+;Distance=1544;DiscordantMatePairAlignments=197;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_021012:+;RightGenes=NM_021012:+;XRef=rs67372876 (chr17:21261870-21263413);Frequency=1.00
chr17	CG	SV	21261870	21262430	197	+	.	ID=1710;Type=deletion;Left=chr17:21261870-21262430;Right=chr17:21263414-21263907
chr17	CG	SV	21263414	21263907	197	+	.	ID=1710;Type=deletion;Left=chr17:21261870-21262430;Right=chr17:21263414-21263907
chr17	CG	SV	23804514	23808019	101	.	.	ID=1706;Type=deletion;Left=chr17:23804514-23804771+;Right=chr17:23807620-23808019+;Distance=3106;DiscordantMatePairAlignments=101;LeftRepeat=MER21B:LTR:ERV1;Self chain;RightRepeat=SVA:Other:Other;Self chain;Tandem period 40;LeftGenes=;RightGenes=;XRef=rs72148141 (chr17:23804512-23807618);Frequency=0.76
chr17	CG	SV	23804514	23804771	101	+	.	ID=1706;Type=deletion;Left=chr17:23804514-23804771;Right=chr17:23807620-23808019
chr17	CG	SV	23807620	23808019	101	+	.	ID=1706;Type=deletion;Left=chr17:23804514-23804771;Right=chr17:23807620-23808019
chr17	CG	SV	37065341	37344668	66	.	.	ID=664;Type=tandem-duplication;Left=chr17:37065341-37065806-;Right=chr17:37344274-37344668-;Distance=278862;DiscordantMatePairAlignments=66;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_031421:+;XRef=;Frequency=0.00
chr17	CG	SV	37065341	37065806	66	-	.	ID=664;Type=tandem-duplication;Left=chr17:37065341-37065806;Right=chr17:37344274-37344668
chr17	CG	SV	37344274	37344668	66	-	.	ID=664;Type=tandem-duplication;Left=chr17:37065341-37065806;Right=chr17:37344274-37344668
chr17	CG	SV	38736787	38819414	34	.	.	ID=70;Type=probable-inversion;Left=chr17:38736787-38737115-;Right=chr17:38819095-38819414+;Distance=81980;DiscordantMatePairAlignments=34;LeftRepeat=SegDup;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=NR_027412:-;NR_027413:-;XRef=;Frequency=1.00
chr17	CG	SV	38736787	38737115	34	-	.	ID=70;Type=probable-inversion;Left=chr17:38736787-38737115;Right=chr17:38819095-38819414
chr17	CG	SV	38819095	38819414	34	-	.	ID=70;Type=probable-inversion;Left=chr17:38736787-38737115;Right=chr17:38819095-38819414
chr17	CG	SV	38739015	38821808	11	.	.	ID=1700;Type=deletion;Left=chr17:38739015-38739250+;Right=chr17:38821536-38821808+;Distance=82521;DiscordantMatePairAlignments=11;LeftRepeat=MIRb:SINE:MIR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NR_027412:-;NR_027413:-;XRef=;Frequency=0.82
chr17	CG	SV	38739015	38739250	11	+	.	ID=1700;Type=deletion;Left=chr17:38739015-38739250;Right=chr17:38821536-38821808
chr17	CG	SV	38821536	38821808	11	+	.	ID=1700;Type=deletion;Left=chr17:38739015-38739250;Right=chr17:38821536-38821808
chr17	CG	SV	38793647	38796107	32	.	.	ID=1699;Type=deletion;Left=chr17:38793647-38794071+;Right=chr17:38795866-38796107+;Distance=2219;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66799059 (chr17:38793491-38795710);Frequency=0.41
chr17	CG	SV	38793647	38794071	32	+	.	ID=1699;Type=deletion;Left=chr17:38793647-38794071;Right=chr17:38795866-38796107
chr17	CG	SV	38795866	38796107	32	+	.	ID=1699;Type=deletion;Left=chr17:38793647-38794071;Right=chr17:38795866-38796107
chr17	CG	SV	38872585	38874169	18	.	.	ID=1698;Type=deletion;Left=chr17:38872585-38873044+;Right=chr17:38873873-38874169+;Distance=1288;DiscordantMatePairAlignments=18;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr17	CG	SV	38872585	38873044	18	+	.	ID=1698;Type=deletion;Left=chr17:38872585-38873044;Right=chr17:38873873-38874169
chr17	CG	SV	38873873	38874169	18	+	.	ID=1698;Type=deletion;Left=chr17:38872585-38873044;Right=chr17:38873873-38874169
chr17	CG	SV	41643097	42530822	11	.	.	ID=663;Type=tandem-duplication;Left=chr17:41643097-41643642-;Right=chr17:42530744-42530822-;Distance=887180;DiscordantMatePairAlignments=11;LeftRepeat=AluSc:SINE:Alu;Self chain;Tandem A;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr17	CG	SV	41643097	41643642	11	-	.	ID=663;Type=tandem-duplication;Left=chr17:41643097-41643642;Right=chr17:42530744-42530822
chr17	CG	SV	42530744	42530822	11	-	.	ID=663;Type=tandem-duplication;Left=chr17:41643097-41643642;Right=chr17:42530744-42530822
chr17	CG	SV	42569727	42571251	342	.	.	ID=1694;Type=complex;Left=chr17:42569727-42570195+;Right=chr17:42571105-42571251+;Distance=1378;DiscordantMatePairAlignments=342;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42569727	42570195	342	+	.	ID=1694;Type=complex;Left=chr17:42569727-42570195;Right=chr17:42571105-42571251
chr17	CG	SV	42571105	42571251	342	+	.	ID=1694;Type=complex;Left=chr17:42569727-42570195;Right=chr17:42571105-42571251
chr17	CG	SV	42569727	42574708	286	.	.	ID=1693;Type=complex;Left=chr17:42569727-42570080+;Right=chr17:42574216-42574708+;Distance=4489;DiscordantMatePairAlignments=286;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42569727	42570080	286	+	.	ID=1693;Type=complex;Left=chr17:42569727-42570080;Right=chr17:42574216-42574708
chr17	CG	SV	42574216	42574708	286	+	.	ID=1693;Type=complex;Left=chr17:42569727-42570080;Right=chr17:42574216-42574708
chr17	CG	SV	42571256	42574391	10	.	.	ID=1692;Type=complex;Left=chr17:42571256-42571407+;Right=chr17:42574225-42574391+;Distance=2969;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42571256	42571407	10	+	.	ID=1692;Type=complex;Left=chr17:42571256-42571407;Right=chr17:42574225-42574391
chr17	CG	SV	42574225	42574391	10	+	.	ID=1692;Type=complex;Left=chr17:42571256-42571407;Right=chr17:42574225-42574391
chr17	CG	SV	42571256	42574803	47	.	.	ID=1691;Type=complex;Left=chr17:42571256-42571409+;Right=chr17:42574595-42574803+;Distance=3339;DiscordantMatePairAlignments=47;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42571256	42571409	47	+	.	ID=1691;Type=complex;Left=chr17:42571256-42571409;Right=chr17:42574595-42574803
chr17	CG	SV	42574595	42574803	47	+	.	ID=1691;Type=complex;Left=chr17:42571256-42571409;Right=chr17:42574595-42574803
chr17	CG	SV	42574391	42576327	21	.	.	ID=1688;Type=complex;Left=chr17:42574391-42574554+;Right=chr17:42576250-42576327+;Distance=1859;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42574391	42574554	21	+	.	ID=1688;Type=complex;Left=chr17:42574391-42574554;Right=chr17:42576250-42576327
chr17	CG	SV	42576250	42576327	21	+	.	ID=1688;Type=complex;Left=chr17:42574391-42574554;Right=chr17:42576250-42576327
chr17	CG	SV	42574803	42589401	45	.	.	ID=1687;Type=complex;Left=chr17:42574803-42574970+;Right=chr17:42589277-42589401+;Distance=14474;DiscordantMatePairAlignments=45;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42574803	42574970	45	+	.	ID=1687;Type=complex;Left=chr17:42574803-42574970;Right=chr17:42589277-42589401
chr17	CG	SV	42589277	42589401	45	+	.	ID=1687;Type=complex;Left=chr17:42574803-42574970;Right=chr17:42589277-42589401
chr17	CG	SV	42576345	42589426	216	.	.	ID=1686;Type=complex;Left=chr17:42576345-42576447+;Right=chr17:42589277-42589426+;Distance=12932;DiscordantMatePairAlignments=216;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42576345	42576447	216	+	.	ID=1686;Type=complex;Left=chr17:42576345-42576447;Right=chr17:42589277-42589426
chr17	CG	SV	42589277	42589426	216	+	.	ID=1686;Type=complex;Left=chr17:42576345-42576447;Right=chr17:42589277-42589426
chr17	CG	SV	42584282	42589636	21	.	.	ID=1685;Type=complex;Left=chr17:42584282-42584386+;Right=chr17:42589277-42589636+;Distance=4995;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=0.88
chr17	CG	SV	42584282	42584386	21	+	.	ID=1685;Type=complex;Left=chr17:42584282-42584386;Right=chr17:42589277-42589636
chr17	CG	SV	42589277	42589636	21	+	.	ID=1685;Type=complex;Left=chr17:42584282-42584386;Right=chr17:42589277-42589636
chr17	CG	SV	42589489	42590671	121	.	.	ID=1682;Type=complex;Left=chr17:42589489-42589692+;Right=chr17:42590569-42590671+;Distance=1080;DiscordantMatePairAlignments=121;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42589489	42589692	121	+	.	ID=1682;Type=complex;Left=chr17:42589489-42589692;Right=chr17:42590569-42590671
chr17	CG	SV	42590569	42590671	121	+	.	ID=1682;Type=complex;Left=chr17:42589489-42589692;Right=chr17:42590569-42590671
chr17	CG	SV	42589747	42602407	23	.	.	ID=1681;Type=complex;Left=chr17:42589747-42590185+;Right=chr17:42602281-42602407+;Distance=12534;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42589747	42590185	23	+	.	ID=1681;Type=complex;Left=chr17:42589747-42590185;Right=chr17:42602281-42602407
chr17	CG	SV	42602281	42602407	23	+	.	ID=1681;Type=complex;Left=chr17:42589747-42590185;Right=chr17:42602281-42602407
chr17	CG	SV	42589747	42604371	25	.	.	ID=1680;Type=complex;Left=chr17:42589747-42590128+;Right=chr17:42604280-42604371+;Distance=14533;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42589747	42590128	25	+	.	ID=1680;Type=complex;Left=chr17:42589747-42590128;Right=chr17:42604280-42604371
chr17	CG	SV	42604280	42604371	25	+	.	ID=1680;Type=complex;Left=chr17:42589747-42590128;Right=chr17:42604280-42604371
chr17	CG	SV	42590669	42621646	66	.	.	ID=1676;Type=complex;Left=chr17:42590669-42590768+;Right=chr17:42621509-42621646+;Distance=30840;DiscordantMatePairAlignments=66;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42590669	42590768	66	+	.	ID=1676;Type=complex;Left=chr17:42590669-42590768;Right=chr17:42621509-42621646
chr17	CG	SV	42621509	42621646	66	+	.	ID=1676;Type=complex;Left=chr17:42590669-42590768;Right=chr17:42621509-42621646
chr17	CG	SV	42590669	42614007	123	.	.	ID=1677;Type=complex;Left=chr17:42590669-42590770+;Right=chr17:42613926-42614007+;Distance=23257;DiscordantMatePairAlignments=123;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42590669	42590770	123	+	.	ID=1677;Type=complex;Left=chr17:42590669-42590770;Right=chr17:42613926-42614007
chr17	CG	SV	42613926	42614007	123	+	.	ID=1677;Type=complex;Left=chr17:42590669-42590770;Right=chr17:42613926-42614007
chr17	CG	SV	42590669	42604421	53	.	.	ID=1679;Type=complex;Left=chr17:42590669-42590770+;Right=chr17:42604280-42604421+;Distance=13611;DiscordantMatePairAlignments=53;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42590669	42590770	53	+	.	ID=1679;Type=complex;Left=chr17:42590669-42590770;Right=chr17:42604280-42604421
chr17	CG	SV	42604280	42604421	53	+	.	ID=1679;Type=complex;Left=chr17:42590669-42590770;Right=chr17:42604280-42604421
chr17	CG	SV	44392242	44393050	81	.	.	ID=1671;Type=deletion;Left=chr17:44392242-44392575+;Right=chr17:44392842-44393050+;Distance=600;DiscordantMatePairAlignments=81;LeftRepeat=Self chain;Tandem period 40;RightRepeat=Self chain;Tandem period 40;LeftGenes=NM_004123:-;RightGenes=NM_004123:-;XRef=rs71886448 (chr17:44392094-44392694);Frequency=1.00
chr17	CG	SV	44392242	44392575	81	+	.	ID=1671;Type=deletion;Left=chr17:44392242-44392575;Right=chr17:44392842-44393050
chr17	CG	SV	44392842	44393050	81	+	.	ID=1671;Type=deletion;Left=chr17:44392242-44392575;Right=chr17:44392842-44393050
chr17	CG	SV	44583438	44584276	11	.	.	ID=1670;Type=deletion;Left=chr17:44583438-44583580+;Right=chr17:44583768-44584276+;Distance=330;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=Tandem A;LeftGenes=NM_001159387:+;NM_001159388:+;NM_153446:+;RightGenes=NM_001159387:+;NM_001159388:+;NM_153446:+;XRef=rs66895707 (chr17:44583452-44583782);Frequency=1.00
chr17	CG	SV	44583438	44583580	11	+	.	ID=1670;Type=deletion;Left=chr17:44583438-44583580;Right=chr17:44583768-44584276
chr17	CG	SV	44583768	44584276	11	+	.	ID=1670;Type=deletion;Left=chr17:44583438-44583580;Right=chr17:44583768-44584276
chr17	CG	SV	44706794	44708398	21	.	.	ID=1669;Type=deletion;Left=chr17:44706794-44707117+;Right=chr17:44708097-44708398+;Distance=1303;DiscordantMatePairAlignments=21;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr17	CG	SV	44706794	44707117	21	+	.	ID=1669;Type=deletion;Left=chr17:44706794-44707117;Right=chr17:44708097-44708398
chr17	CG	SV	44708097	44708398	21	+	.	ID=1669;Type=deletion;Left=chr17:44706794-44707117;Right=chr17:44708097-44708398
chr17	CG	SV	45782534	45783212	54	.	.	ID=1668;Type=deletion;Left=chr17:45782534-45783072+;Right=chr17:45782918-45783212+;Distance=384;DiscordantMatePairAlignments=54;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_022167:+;RightGenes=NM_022167:+;XRef=rs71967066 (chr17:45782410-45782794);Frequency=0.47
chr17	CG	SV	45782534	45783072	54	+	.	ID=1668;Type=deletion;Left=chr17:45782534-45783072;Right=chr17:45782918-45783212
chr17	CG	SV	45782918	45783212	54	+	.	ID=1668;Type=deletion;Left=chr17:45782534-45783072;Right=chr17:45782918-45783212
chr17	CG	SV	53042810	53045095	12	.	.	ID=1666;Type=deletion;Left=chr17:53042810-53043193+;Right=chr17:53044915-53045095+;Distance=2105;DiscordantMatePairAlignments=12;LeftRepeat=AluSg:SINE:Alu;RightRepeat=;LeftGenes=NM_138962:+;NM_170721:+;RightGenes=NM_138962:+;NM_170721:+;XRef=;Frequency=0.88
chr17	CG	SV	53042810	53043193	12	+	.	ID=1666;Type=deletion;Left=chr17:53042810-53043193;Right=chr17:53044915-53045095
chr17	CG	SV	53044915	53045095	12	+	.	ID=1666;Type=deletion;Left=chr17:53042810-53043193;Right=chr17:53044915-53045095
chr17	CG	SV	55235695	55386414	24	.	.	ID=662;Type=tandem-duplication;Left=chr17:55235695-55236003-;Right=chr17:55386045-55386414-;Distance=150411;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_030938:+;RightGenes=NM_016125:-;XRef=;Frequency=0.00
chr17	CG	SV	55235695	55236003	24	-	.	ID=662;Type=tandem-duplication;Left=chr17:55235695-55236003;Right=chr17:55386045-55386414
chr17	CG	SV	55386045	55386414	24	-	.	ID=662;Type=tandem-duplication;Left=chr17:55235695-55236003;Right=chr17:55386045-55386414
chr17	CG	SV	60926433	60926975	10	.	.	ID=661;Type=tandem-duplication;Left=chr17:60926433-60926530-;Right=chr17:60926645-60926975-;Distance=445;DiscordantMatePairAlignments=10;LeftRepeat=(GGGTG)n:Simple_repeat:Simple_repeat;Tandem period 11;Tandem period 21;Tandem period 32;RightRepeat=(TAGGG)n:Simple_repeat:Simple_repeat;Tandem period 11;Tandem period 32;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr17	CG	SV	60926433	60926530	10	-	.	ID=661;Type=tandem-duplication;Left=chr17:60926433-60926530;Right=chr17:60926645-60926975
chr17	CG	SV	60926645	60926975	10	-	.	ID=661;Type=tandem-duplication;Left=chr17:60926433-60926530;Right=chr17:60926645-60926975
chr17	CG	SV	65468882	65469678	114	.	.	ID=660;Type=tandem-duplication;Left=chr17:65468882-65469279-;Right=chr17:65469295-65469678-;Distance=399;DiscordantMatePairAlignments=114;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr17	CG	SV	65468882	65469279	114	-	.	ID=660;Type=tandem-duplication;Left=chr17:65468882-65469279;Right=chr17:65469295-65469678
chr17	CG	SV	65469295	65469678	114	-	.	ID=660;Type=tandem-duplication;Left=chr17:65468882-65469279;Right=chr17:65469295-65469678
chr17	CG	SV	65536288	65536914	14	.	.	ID=659;Type=tandem-duplication;Left=chr17:65536288-65536607-;Right=chr17:65536602-65536914-;Distance=307;DiscordantMatePairAlignments=14;LeftRepeat=L1P4e:LINE:L1;RightRepeat=L1P4e:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr17	CG	SV	65536288	65536607	14	-	.	ID=659;Type=tandem-duplication;Left=chr17:65536288-65536607;Right=chr17:65536602-65536914
chr17	CG	SV	65536602	65536914	14	-	.	ID=659;Type=tandem-duplication;Left=chr17:65536288-65536607;Right=chr17:65536602-65536914
chr17	CG	SV	69234012	69234832	12	.	.	ID=1660;Type=deletion;Left=chr17:69234012-69234245+;Right=chr17:69234472-69234832+;Distance=460;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem period 46;RightRepeat=Self chain;Tandem period 46;LeftGenes=;RightGenes=;XRef=rs72123924 (chr17:69233997-69234457);Frequency=0.47
chr17	CG	SV	69234012	69234245	12	+	.	ID=1660;Type=deletion;Left=chr17:69234012-69234245;Right=chr17:69234472-69234832
chr17	CG	SV	69234472	69234832	12	+	.	ID=1660;Type=deletion;Left=chr17:69234012-69234245;Right=chr17:69234472-69234832
chr17	CG	SV	72499125	72499910	17	.	.	ID=1659;Type=deletion;Left=chr17:72499125-72499355+;Right=chr17:72499444-72499910+;Distance=319;DiscordantMatePairAlignments=17;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=MSTA:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs10522931 (chr17:72499115-72499434);Frequency=0.94
chr17	CG	SV	72499125	72499355	17	+	.	ID=1659;Type=deletion;Left=chr17:72499125-72499355;Right=chr17:72499444-72499910
chr17	CG	SV	72499444	72499910	17	+	.	ID=1659;Type=deletion;Left=chr17:72499125-72499355;Right=chr17:72499444-72499910
chr17	CG	SV	76076491	76078698	31	.	.	ID=1656;Type=deletion;Left=chr17:76076491-76076981+;Right=chr17:76078374-76078698+;Distance=1883;DiscordantMatePairAlignments=31;LeftRepeat=G-rich:Low_complexity:Low_complexity;Tandem period 18;Tandem period 36;RightRepeat=G-rich:Low_complexity:Low_complexity;Tandem period 18;Tandem period 36;LeftGenes=;RightGenes=;XRef=;Frequency=0.25
chr17	CG	SV	76076491	76076981	31	+	.	ID=1656;Type=deletion;Left=chr17:76076491-76076981;Right=chr17:76078374-76078698
chr17	CG	SV	76078374	76078698	31	+	.	ID=1656;Type=deletion;Left=chr17:76076491-76076981;Right=chr17:76078374-76078698
chr17	CG	SV	77726368	77959636	27	.	.	ID=656;Type=tandem-duplication;Left=chr17:77726368-77726719-;Right=chr17:77959310-77959636-;Distance=232917;DiscordantMatePairAlignments=27;LeftRepeat=MER4A1:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=NM_198082:-;RightGenes=NM_024648:-;NM_175902:-;XRef=;Frequency=0.00
chr17	CG	SV	77726368	77726719	27	-	.	ID=656;Type=tandem-duplication;Left=chr17:77726368-77726719;Right=chr17:77959310-77959636
chr17	CG	SV	77959310	77959636	27	-	.	ID=656;Type=tandem-duplication;Left=chr17:77726368-77726719;Right=chr17:77959310-77959636
chr17	CG	SV	78653184	78654731	99	.	.	ID=1653;Type=deletion;Left=chr17:78653184-78653648+;Right=chr17:78654274-78654731+;Distance=1090;DiscordantMatePairAlignments=99;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72246678 (chr17:78653184-78654274);Frequency=0.59
chr17	CG	SV	78653184	78653648	99	+	.	ID=1653;Type=deletion;Left=chr17:78653184-78653648;Right=chr17:78654274-78654731
chr17	CG	SV	78654274	78654731	99	+	.	ID=1653;Type=deletion;Left=chr17:78653184-78653648;Right=chr17:78654274-78654731
chr18	CG	SV	97588	98906	39	.	.	ID=628;Type=distal-duplication;Left=chr18:97588-98036-;Right=chr18:98437-98906-;Distance=870;DiscordantMatePairAlignments=39;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr18	CG	SV	97588	98036	39	-	.	ID=628;Type=distal-duplication;Left=chr18:97588-98036;Right=chr18:98437-98906
chr18	CG	SV	98437	98906	39	-	.	ID=628;Type=distal-duplication;Left=chr18:97588-98036;Right=chr18:98437-98906
chr18	CG	SV	98571	99368	96	.	.	ID=1622;Type=distal-duplication;Left=chr18:98571-99257+;Right=chr18:99010-99368+;Distance=439;DiscordantMatePairAlignments=96;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr18	CG	SV	98571	99257	96	+	.	ID=1622;Type=distal-duplication;Left=chr18:98571-99257;Right=chr18:99010-99368
chr18	CG	SV	99010	99368	96	+	.	ID=1622;Type=distal-duplication;Left=chr18:98571-99257;Right=chr18:99010-99368
chr18	CG	SV	5314645	5316630	25	.	.	ID=1618;Type=deletion;Left=chr18:5314645-5314982+;Right=chr18:5316244-5316630+;Distance=1599;DiscordantMatePairAlignments=25;LeftRepeat=;RightRepeat=L1PA11:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71657028 (chr18:5314645-5316244);Frequency=0.94
chr18	CG	SV	5314645	5314982	25	+	.	ID=1618;Type=deletion;Left=chr18:5314645-5314982;Right=chr18:5316244-5316630
chr18	CG	SV	5316244	5316630	25	+	.	ID=1618;Type=deletion;Left=chr18:5314645-5314982;Right=chr18:5316244-5316630
chr18	CG	SV	20244740	20246367	185	.	.	ID=1611;Type=deletion;Left=chr18:20244740-20245174+;Right=chr18:20246045-20246367+;Distance=1305;DiscordantMatePairAlignments=185;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr18	CG	SV	20244740	20245174	185	+	.	ID=1611;Type=deletion;Left=chr18:20244740-20245174;Right=chr18:20246045-20246367
chr18	CG	SV	20246045	20246367	185	+	.	ID=1611;Type=deletion;Left=chr18:20244740-20245174;Right=chr18:20246045-20246367
chr18	CG	SV	22001811	22005430	17	.	.	ID=1609;Type=deletion;Left=chr18:22001811-22002194+;Right=chr18:22005328-22005430+;Distance=3517;DiscordantMatePairAlignments=17;LeftRepeat=MLT1B:LTR:MaLR;Self chain;RightRepeat=Self chain;LeftGenes=NM_001025096:+;NM_001025097:+;NM_144662:+;RightGenes=NM_001025096:+;NM_001025097:+;NM_144662:+;XRef=rs71170272 (chr18:22001811-22005328);Frequency=0.12
chr18	CG	SV	22001811	22002194	17	+	.	ID=1609;Type=deletion;Left=chr18:22001811-22002194;Right=chr18:22005328-22005430
chr18	CG	SV	22005328	22005430	17	+	.	ID=1609;Type=deletion;Left=chr18:22001811-22002194;Right=chr18:22005328-22005430
chr18	CG	SV	30915970	30916728	18	.	.	ID=1606;Type=deletion;Left=chr18:30915970-30916375+;Right=chr18:30916287-30916728+;Distance=317;DiscordantMatePairAlignments=18;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001143826:+;NM_001143827:+;NM_014268:+;NR_026570:+;RightGenes=NM_001143826:+;NM_001143827:+;NM_014268:+;NR_026570:+;XRef=rs72399344 (chr18:30915970-30916287);Frequency=0.47
chr18	CG	SV	30915970	30916375	18	+	.	ID=1606;Type=deletion;Left=chr18:30915970-30916375;Right=chr18:30916287-30916728
chr18	CG	SV	30916287	30916728	18	+	.	ID=1606;Type=deletion;Left=chr18:30915970-30916375;Right=chr18:30916287-30916728
chr18	CG	SV	31924384	31927528	51	.	.	ID=1605;Type=deletion;Left=chr18:31924384-31924710+;Right=chr18:31927139-31927528+;Distance=2755;DiscordantMatePairAlignments=51;LeftRepeat=AluSx:SINE:Alu;RightRepeat=MER90a:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	31924384	31924710	51	+	.	ID=1605;Type=deletion;Left=chr18:31924384-31924710;Right=chr18:31927139-31927528
chr18	CG	SV	31927139	31927528	51	+	.	ID=1605;Type=deletion;Left=chr18:31924384-31924710;Right=chr18:31927139-31927528
chr18	CG	SV	33560058	33561057	113	.	.	ID=1604;Type=deletion;Left=chr18:33560058-33560450+;Right=chr18:33560630-33561057+;Distance=572;DiscordantMatePairAlignments=113;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68016188 (chr18:33560058-33560620);Frequency=0.71
chr18	CG	SV	33560058	33560450	113	+	.	ID=1604;Type=deletion;Left=chr18:33560058-33560450;Right=chr18:33560630-33561057
chr18	CG	SV	33560630	33561057	113	+	.	ID=1604;Type=deletion;Left=chr18:33560058-33560450;Right=chr18:33560630-33561057
chr18	CG	SV	33569634	33570317	14	.	.	ID=1603;Type=deletion;Left=chr18:33569634-33570075+;Right=chr18:33569952-33570317+;Distance=318;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=MER5B:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs67951304 (chr18:33569619-33569937);Frequency=0.71
chr18	CG	SV	33569634	33570075	14	+	.	ID=1603;Type=deletion;Left=chr18:33569634-33570075;Right=chr18:33569952-33570317
chr18	CG	SV	33569952	33570317	14	+	.	ID=1603;Type=deletion;Left=chr18:33569634-33570075;Right=chr18:33569952-33570317
chr18	CG	SV	35315644	35316440	23	.	.	ID=1602;Type=deletion;Left=chr18:35315644-35316015+;Right=chr18:35315974-35316440+;Distance=330;DiscordantMatePairAlignments=23;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NR_024391:-;RightGenes=NR_024391:-;XRef=rs35059019 (chr18:35315644-35315974);Frequency=1.00
chr18	CG	SV	35315644	35316015	23	+	.	ID=1602;Type=deletion;Left=chr18:35315644-35316015;Right=chr18:35315974-35316440
chr18	CG	SV	35315974	35316440	23	+	.	ID=1602;Type=deletion;Left=chr18:35315644-35316015;Right=chr18:35315974-35316440
chr18	CG	SV	41515012	41515734	32	.	.	ID=1599;Type=deletion;Left=chr18:41515012-41515512+;Right=chr18:41515337-41515734+;Distance=325;DiscordantMatePairAlignments=32;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_007163:+;RightGenes=NM_007163:+;XRef=rs68176567 (chr18:41515001-41515326);Frequency=1.00
chr18	CG	SV	41515012	41515512	32	+	.	ID=1599;Type=deletion;Left=chr18:41515012-41515512;Right=chr18:41515337-41515734
chr18	CG	SV	41515337	41515734	32	+	.	ID=1599;Type=deletion;Left=chr18:41515012-41515512;Right=chr18:41515337-41515734
chr18	CG	SV	42592431	42593174	18	.	.	ID=1598;Type=deletion;Left=chr18:42592431-42592781+;Right=chr18:42592768-42593174+;Distance=337;DiscordantMatePairAlignments=18;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6146302 (chr18:42592431-42592768);Frequency=0.94
chr18	CG	SV	42592431	42592781	18	+	.	ID=1598;Type=deletion;Left=chr18:42592431-42592781;Right=chr18:42592768-42593174
chr18	CG	SV	42592768	42593174	18	+	.	ID=1598;Type=deletion;Left=chr18:42592431-42592781;Right=chr18:42592768-42593174
chr18	CG	SV	44250160	44250967	15	.	.	ID=1597;Type=deletion;Left=chr18:44250160-44250557+;Right=chr18:44250477-44250967+;Distance=317;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs6146307 (chr18:44250160-44250477);Frequency=1.00
chr18	CG	SV	44250160	44250557	15	+	.	ID=1597;Type=deletion;Left=chr18:44250160-44250557;Right=chr18:44250477-44250967
chr18	CG	SV	44250477	44250967	15	+	.	ID=1597;Type=deletion;Left=chr18:44250160-44250557;Right=chr18:44250477-44250967
chr18	CG	SV	45273858	45274576	19	.	.	ID=1596;Type=deletion;Left=chr18:45273858-45274478+;Right=chr18:45274180-45274576+;Distance=322;DiscordantMatePairAlignments=19;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs33917211 (chr18:45273849-45274171);Frequency=0.82
chr18	CG	SV	45273858	45274478	19	+	.	ID=1596;Type=deletion;Left=chr18:45273858-45274478;Right=chr18:45274180-45274576
chr18	CG	SV	45274180	45274576	19	+	.	ID=1596;Type=deletion;Left=chr18:45273858-45274478;Right=chr18:45274180-45274576
chr18	CG	SV	48716565	48717408	36	.	.	ID=1595;Type=deletion;Left=chr18:48716565-48716949+;Right=chr18:48717030-48717408+;Distance=465;DiscordantMatePairAlignments=36;LeftRepeat=;RightRepeat=;LeftGenes=NM_005215:+;RightGenes=NM_005215:+;XRef=rs72465148 (chr18:48716563-48717028);Frequency=0.53
chr18	CG	SV	48716565	48716949	36	+	.	ID=1595;Type=deletion;Left=chr18:48716565-48716949;Right=chr18:48717030-48717408
chr18	CG	SV	48717030	48717408	36	+	.	ID=1595;Type=deletion;Left=chr18:48716565-48716949;Right=chr18:48717030-48717408
chr18	CG	SV	49390403	49392122	70	.	.	ID=1592;Type=deletion;Left=chr18:49390403-49390876+;Right=chr18:49391772-49392122+;Distance=1369;DiscordantMatePairAlignments=70;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr18	CG	SV	49390403	49390876	70	+	.	ID=1592;Type=deletion;Left=chr18:49390403-49390876;Right=chr18:49391772-49392122
chr18	CG	SV	49391772	49392122	70	+	.	ID=1592;Type=deletion;Left=chr18:49390403-49390876;Right=chr18:49391772-49392122
chr18	CG	SV	49459967	49464974	66	.	.	ID=1591;Type=deletion;Left=chr18:49459967-49460445+;Right=chr18:49464572-49464974+;Distance=4605;DiscordantMatePairAlignments=66;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr18	CG	SV	49459967	49460445	66	+	.	ID=1591;Type=deletion;Left=chr18:49459967-49460445;Right=chr18:49464572-49464974
chr18	CG	SV	49464572	49464974	66	+	.	ID=1591;Type=deletion;Left=chr18:49459967-49460445;Right=chr18:49464572-49464974
chr18	CG	SV	50206966	50211383	93	.	.	ID=1590;Type=deletion;Left=chr18:50206966-50207395+;Right=chr18:50210962-50211383+;Distance=3996;DiscordantMatePairAlignments=93;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66588236 (chr18:50206961-50210957);Frequency=0.94
chr18	CG	SV	50206966	50207395	93	+	.	ID=1590;Type=deletion;Left=chr18:50206966-50207395;Right=chr18:50210962-50211383
chr18	CG	SV	50210962	50211383	93	+	.	ID=1590;Type=deletion;Left=chr18:50206966-50207395;Right=chr18:50210962-50211383
chr18	CG	SV	52644066	52644504	12	.	.	ID=598;Type=tandem-duplication;Left=chr18:52644066-52644285-;Right=chr18:52644254-52644504-;Distance=219;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=NM_015285:+;NM_052834:+;RightGenes=NM_015285:+;NM_052834:+;XRef=;Frequency=0.12
chr18	CG	SV	52644066	52644285	12	-	.	ID=598;Type=tandem-duplication;Left=chr18:52644066-52644285;Right=chr18:52644254-52644504
chr18	CG	SV	52644254	52644504	12	-	.	ID=598;Type=tandem-duplication;Left=chr18:52644066-52644285;Right=chr18:52644254-52644504
chr18	CG	SV	53097735	53100136	124	.	.	ID=1588;Type=deletion;Left=chr18:53097735-53098283+;Right=chr18:53099715-53100136+;Distance=1980;DiscordantMatePairAlignments=124;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66803181 (chr18:53097735-53099715);Frequency=1.00
chr18	CG	SV	53097735	53098283	124	+	.	ID=1588;Type=deletion;Left=chr18:53097735-53098283;Right=chr18:53099715-53100136
chr18	CG	SV	53099715	53100136	124	+	.	ID=1588;Type=deletion;Left=chr18:53097735-53098283;Right=chr18:53099715-53100136
chr18	CG	SV	53328449	53329224	11	.	.	ID=1587;Type=deletion;Left=chr18:53328449-53328934+;Right=chr18:53329079-53329224+;Distance=630;DiscordantMatePairAlignments=11;LeftRepeat=AluSp:SINE:Alu;Tandem period 313;RightRepeat=Tandem period 313;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr18	CG	SV	53328449	53328934	11	+	.	ID=1587;Type=deletion;Left=chr18:53328449-53328934;Right=chr18:53329079-53329224
chr18	CG	SV	53329079	53329224	11	+	.	ID=1587;Type=deletion;Left=chr18:53328449-53328934;Right=chr18:53329079-53329224
chr18	CG	SV	55409174	55409876	10	.	.	ID=1584;Type=deletion;Left=chr18:55409174-55409628+;Right=chr18:55409512-55409876+;Distance=338;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;RightRepeat=L1MC4a:LINE:L1;LeftGenes=NM_133459:-;RightGenes=NM_133459:-;XRef=rs10529437 (chr18:55409158-55409496);Frequency=0.41
chr18	CG	SV	55409174	55409628	10	+	.	ID=1584;Type=deletion;Left=chr18:55409174-55409628;Right=chr18:55409512-55409876
chr18	CG	SV	55409512	55409876	10	+	.	ID=1584;Type=deletion;Left=chr18:55409174-55409628;Right=chr18:55409512-55409876
chr18	CG	SV	57823763	57825485	14	.	.	ID=1583;Type=deletion;Left=chr18:57823763-57824238+;Right=chr18:57825222-57825485+;Distance=1459;DiscordantMatePairAlignments=14;LeftRepeat=THE1A:LTR:MaLR;RightRepeat=THE1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr18	CG	SV	57823763	57824238	14	+	.	ID=1583;Type=deletion;Left=chr18:57823763-57824238;Right=chr18:57825222-57825485
chr18	CG	SV	57825222	57825485	14	+	.	ID=1583;Type=deletion;Left=chr18:57823763-57824238;Right=chr18:57825222-57825485
chr18	CG	SV	59036671	59037037	22	.	.	ID=596;Type=tandem-duplication;Left=chr18:59036671-59036817-;Right=chr18:59036817-59037037-;Distance=220;DiscordantMatePairAlignments=22;LeftRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Tandem period 17;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;LeftGenes=NM_000633:-;RightGenes=NM_000633:-;XRef=;Frequency=1.00
chr18	CG	SV	59036671	59036817	22	-	.	ID=596;Type=tandem-duplication;Left=chr18:59036671-59036817;Right=chr18:59036817-59037037
chr18	CG	SV	59036817	59037037	22	-	.	ID=596;Type=tandem-duplication;Left=chr18:59036671-59036817;Right=chr18:59036817-59037037
chr18	CG	SV	61684234	61684935	22	.	.	ID=1582;Type=deletion;Left=chr18:61684234-61684696+;Right=chr18:61684578-61684935+;Distance=344;DiscordantMatePairAlignments=22;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_004361:+;NM_033646:+;RightGenes=NM_004361:+;NM_033646:+;XRef=rs66696953 (chr18:61684218-61684562);Frequency=1.00
chr18	CG	SV	61684234	61684696	22	+	.	ID=1582;Type=deletion;Left=chr18:61684234-61684696;Right=chr18:61684578-61684935
chr18	CG	SV	61684578	61684935	22	+	.	ID=1582;Type=deletion;Left=chr18:61684234-61684696;Right=chr18:61684578-61684935
chr18	CG	SV	64379937	64380763	28	.	.	ID=1581;Type=deletion;Left=chr18:64379937-64380307+;Right=chr18:64380315-64380763+;Distance=378;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs6146366 (chr18:64379937-64380315);Frequency=0.53
chr18	CG	SV	64379937	64380307	28	+	.	ID=1581;Type=deletion;Left=chr18:64379937-64380307;Right=chr18:64380315-64380763
chr18	CG	SV	64380315	64380763	28	+	.	ID=1581;Type=deletion;Left=chr18:64379937-64380307;Right=chr18:64380315-64380763
chr18	CG	SV	66997721	66998451	13	.	.	ID=1580;Type=deletion;Left=chr18:66997721-66998068+;Right=chr18:66998055-66998451+;Distance=334;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10705382 (chr18:66997721-66998055);Frequency=0.88
chr18	CG	SV	66997721	66998068	13	+	.	ID=1580;Type=deletion;Left=chr18:66997721-66998068;Right=chr18:66998055-66998451
chr18	CG	SV	66998055	66998451	13	+	.	ID=1580;Type=deletion;Left=chr18:66997721-66998068;Right=chr18:66998055-66998451
chr18	CG	SV	69153643	69155426	20	.	.	ID=1579;Type=deletion;Left=chr18:69153643-69154084+;Right=chr18:69155235-69155426+;Distance=1592;DiscordantMatePairAlignments=20;LeftRepeat=AluY:SINE:Alu;Tandem A;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	69153643	69154084	20	+	.	ID=1579;Type=deletion;Left=chr18:69153643-69154084;Right=chr18:69155235-69155426
chr18	CG	SV	69155235	69155426	20	+	.	ID=1579;Type=deletion;Left=chr18:69153643-69154084;Right=chr18:69155235-69155426
chr18	CG	SV	70303422	70304143	14	.	.	ID=1577;Type=deletion;Left=chr18:70303422-70303857+;Right=chr18:70303762-70304143+;Distance=340;DiscordantMatePairAlignments=14;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10526978 (chr18:70303408-70303748);Frequency=1.00
chr18	CG	SV	70303422	70303857	14	+	.	ID=1577;Type=deletion;Left=chr18:70303422-70303857;Right=chr18:70303762-70304143
chr18	CG	SV	70303762	70304143	14	+	.	ID=1577;Type=deletion;Left=chr18:70303422-70303857;Right=chr18:70303762-70304143
chr18	CG	SV	72476184	72477426	148	.	.	ID=1574;Type=deletion;Left=chr18:72476184-72476616+;Right=chr18:72476985-72477426+;Distance=801;DiscordantMatePairAlignments=148;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr18	CG	SV	72476184	72476616	148	+	.	ID=1574;Type=deletion;Left=chr18:72476184-72476616;Right=chr18:72476985-72477426
chr18	CG	SV	72476985	72477426	148	+	.	ID=1574;Type=deletion;Left=chr18:72476184-72476616;Right=chr18:72476985-72477426
chr18	CG	SV	73395986	73397553	59	.	.	ID=1571;Type=deletion;Left=chr18:73395986-73396347+;Right=chr18:73397148-73397553+;Distance=1162;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66626305 (chr18:73395985-73397147);Frequency=0.82
chr18	CG	SV	73395986	73396347	59	+	.	ID=1571;Type=deletion;Left=chr18:73395986-73396347;Right=chr18:73397148-73397553
chr18	CG	SV	73397148	73397553	59	+	.	ID=1571;Type=deletion;Left=chr18:73395986-73396347;Right=chr18:73397148-73397553
chr18	CG	SV	74763476	74767762	71	.	.	ID=1570;Type=deletion;Left=chr18:74763476-74763901+;Right=chr18:74767312-74767762+;Distance=3836;DiscordantMatePairAlignments=71;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72010801 (chr18:74763476-74767311);Frequency=0.29
chr18	CG	SV	74763476	74763901	71	+	.	ID=1570;Type=deletion;Left=chr18:74763476-74763901;Right=chr18:74767312-74767762
chr18	CG	SV	74767312	74767762	71	+	.	ID=1570;Type=deletion;Left=chr18:74763476-74763901;Right=chr18:74767312-74767762
chr18	CG	SV	75061592	75061750	361	.	.	ID=593;Type=tandem-duplication;Left=chr18:75061592-75061691-;Right=chr18:75061664-75061750-;Distance=59;DiscordantMatePairAlignments=361;LeftRepeat=Self chain;Tandem period 33;RightRepeat=G-rich:Low_complexity:Low_complexity;Self chain;Tandem period 33;LeftGenes=NM_198531:+;RightGenes=NM_198531:+;XRef=;Frequency=1.00
chr18	CG	SV	75061592	75061691	361	-	.	ID=593;Type=tandem-duplication;Left=chr18:75061592-75061691;Right=chr18:75061664-75061750
chr18	CG	SV	75061664	75061750	361	-	.	ID=593;Type=tandem-duplication;Left=chr18:75061592-75061691;Right=chr18:75061664-75061750
chr18	CG	SV	75410938	75413526	149	.	.	ID=1569;Type=deletion;Left=chr18:75410938-75411424+;Right=chr18:75413079-75413526+;Distance=2141;DiscordantMatePairAlignments=149;LeftRepeat=Self chain;Tandem period 54;RightRepeat=Self chain;Tandem period 54;LeftGenes=;RightGenes=;XRef=rs71172180 (chr18:75410938-75413079);Frequency=0.59
chr18	CG	SV	75410938	75411424	149	+	.	ID=1569;Type=deletion;Left=chr18:75410938-75411424;Right=chr18:75413079-75413526
chr18	CG	SV	75413079	75413526	149	+	.	ID=1569;Type=deletion;Left=chr18:75410938-75411424;Right=chr18:75413079-75413526
chr18	CG	SV	75600839	75601634	11	.	.	ID=1568;Type=deletion;Left=chr18:75600839-75601259+;Right=chr18:75601199-75601634+;Distance=360;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 30;RightRepeat=Self chain;LeftGenes=NM_004715:+;NM_048368:+;RightGenes=NM_004715:+;NM_048368:+;XRef=rs72233585 (chr18:75600764-75601124);Frequency=1.00
chr18	CG	SV	75600839	75601259	11	+	.	ID=1568;Type=deletion;Left=chr18:75600839-75601259;Right=chr18:75601199-75601634
chr18	CG	SV	75601199	75601634	11	+	.	ID=1568;Type=deletion;Left=chr18:75600839-75601259;Right=chr18:75601199-75601634
chr19	CG	SV	966487	966995	25	.	.	ID=591;Type=tandem-duplication;Left=chr19:966487-966732-;Right=chr19:966723-966995-;Distance=263;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001033026:-;NM_033420:-;RightGenes=NM_001033026:-;NM_033420:-;XRef=;Frequency=0.06
chr19	CG	SV	966487	966732	25	-	.	ID=591;Type=tandem-duplication;Left=chr19:966487-966732;Right=chr19:966723-966995
chr19	CG	SV	966723	966995	25	-	.	ID=591;Type=tandem-duplication;Left=chr19:966487-966732;Right=chr19:966723-966995
chr19	CG	SV	1092889	1093274	13	.	.	ID=590;Type=tandem-duplication;Left=chr19:1092889-1093020-;Right=chr19:1093123-1093274-;Distance=254;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 30;RightRepeat=Self chain;LeftGenes=NM_014963:-;RightGenes=NM_014963:-;XRef=;Frequency=1.00
chr19	CG	SV	1092889	1093020	13	-	.	ID=590;Type=tandem-duplication;Left=chr19:1092889-1093020;Right=chr19:1093123-1093274
chr19	CG	SV	1093123	1093274	13	-	.	ID=590;Type=tandem-duplication;Left=chr19:1092889-1093020;Right=chr19:1093123-1093274
chr19	CG	SV	2058644	2200476	70	.	.	ID=589;Type=tandem-duplication;Left=chr19:2058644-2058995-;Right=chr19:2199945-2200476-;Distance=141481;DiscordantMatePairAlignments=70;LeftRepeat=L1MD:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_001077523:-;NM_003938:-;RightGenes=NM_000479:+;XRef=;Frequency=0.00
chr19	CG	SV	2058644	2058995	70	-	.	ID=589;Type=tandem-duplication;Left=chr19:2058644-2058995;Right=chr19:2199945-2200476
chr19	CG	SV	2199945	2200476	70	-	.	ID=589;Type=tandem-duplication;Left=chr19:2058644-2058995;Right=chr19:2199945-2200476
chr19	CG	SV	4569621	4571059	127	.	.	ID=1561;Type=deletion;Left=chr19:4569621-4570048+;Right=chr19:4570605-4571059+;Distance=984;DiscordantMatePairAlignments=127;LeftRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 17;RightRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 17;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr19	CG	SV	4569621	4570048	127	+	.	ID=1561;Type=deletion;Left=chr19:4569621-4570048;Right=chr19:4570605-4571059
chr19	CG	SV	4570605	4571059	127	+	.	ID=1561;Type=deletion;Left=chr19:4569621-4570048;Right=chr19:4570605-4571059
chr19	CG	SV	4690338	4690558	12	.	.	ID=3387;Type=probable-inversion;Left=chr19:4690338-4690670+;Right=chr19:4690424-4690558-;Distance=220;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr19	CG	SV	4690338	4690670	12	+	.	ID=3387;Type=probable-inversion;Left=chr19:4690338-4690670;Right=chr19:4690424-4690558
chr19	CG	SV	4690424	4690558	12	+	.	ID=3387;Type=probable-inversion;Left=chr19:4690338-4690670;Right=chr19:4690424-4690558
chr19	CG	SV	7209364	7210562	28	.	.	ID=1554;Type=deletion;Left=chr19:7209364-7209729+;Right=chr19:7210294-7210562+;Distance=930;DiscordantMatePairAlignments=28;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=NM_000208:-;NM_001079817:-;RightGenes=NM_000208:-;NM_001079817:-;XRef=;Frequency=0.12
chr19	CG	SV	7209364	7209729	28	+	.	ID=1554;Type=deletion;Left=chr19:7209364-7209729;Right=chr19:7210294-7210562
chr19	CG	SV	7210294	7210562	28	+	.	ID=1554;Type=deletion;Left=chr19:7209364-7209729;Right=chr19:7210294-7210562
chr19	CG	SV	8420425	8421141	33	.	.	ID=1552;Type=deletion;Left=chr19:8420425-8420952+;Right=chr19:8420732-8421141+;Distance=307;DiscordantMatePairAlignments=33;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_005968:+;NM_031203:+;RightGenes=NM_005968:+;NM_031203:+;XRef=rs71166204 (chr19:8420425-8420732);Frequency=1.00
chr19	CG	SV	8420425	8420952	33	+	.	ID=1552;Type=deletion;Left=chr19:8420425-8420952;Right=chr19:8420732-8421141
chr19	CG	SV	8420732	8421141	33	+	.	ID=1552;Type=deletion;Left=chr19:8420425-8420952;Right=chr19:8420732-8421141
chr19	CG	SV	17303306	17311547	11	.	.	ID=586;Type=tandem-duplication;Left=chr19:17303306-17303743-;Right=chr19:17311217-17311547-;Distance=7804;DiscordantMatePairAlignments=11;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_020959:-;RightGenes=NM_001128855:+;NM_032620:+;NM_133644:+;XRef=;Frequency=0.00
chr19	CG	SV	17303306	17303743	11	-	.	ID=586;Type=tandem-duplication;Left=chr19:17303306-17303743;Right=chr19:17311217-17311547
chr19	CG	SV	17311217	17311547	11	-	.	ID=586;Type=tandem-duplication;Left=chr19:17303306-17303743;Right=chr19:17311217-17311547
chr19	CG	SV	20377009	20380191	10	.	.	ID=1547;Type=deletion;Left=chr19:20377009-20377393+;Right=chr19:20379861-20380191+;Distance=2852;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=L1MB2:LINE:L1;Self chain;LeftGenes=NM_001039884:-;RightGenes=NM_001039884:-;XRef=rs72102339 (chr19:20377009-20379861);Frequency=0.88
chr19	CG	SV	20377009	20377393	10	+	.	ID=1547;Type=deletion;Left=chr19:20377009-20377393;Right=chr19:20379861-20380191
chr19	CG	SV	20379861	20380191	10	+	.	ID=1547;Type=deletion;Left=chr19:20377009-20377393;Right=chr19:20379861-20380191
chr19	CG	SV	21542570	21543955	28	.	.	ID=1546;Type=deletion;Left=chr19:21542570-21542896+;Right=chr19:21543553-21543955+;Distance=983;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr19	CG	SV	21542570	21542896	28	+	.	ID=1546;Type=deletion;Left=chr19:21542570-21542896;Right=chr19:21543553-21543955
chr19	CG	SV	21543553	21543955	28	+	.	ID=1546;Type=deletion;Left=chr19:21542570-21542896;Right=chr19:21543553-21543955
chr19	CG	SV	23727701	23728263	10	.	.	ID=585;Type=tandem-duplication;Left=chr19:23727701-23727926-;Right=chr19:23728068-23728263-;Distance=337;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_138286:-;RightGenes=NM_138286:-;XRef=;Frequency=1.00
chr19	CG	SV	23727701	23727926	10	-	.	ID=585;Type=tandem-duplication;Left=chr19:23727701-23727926;Right=chr19:23728068-23728263
chr19	CG	SV	23728068	23728263	10	-	.	ID=585;Type=tandem-duplication;Left=chr19:23727701-23727926;Right=chr19:23728068-23728263
chr19	CG	SV	34642029	34648513	65	.	.	ID=1534;Type=deletion;Left=chr19:34642029-34642397+;Right=chr19:34648012-34648513+;Distance=5983;DiscordantMatePairAlignments=65;LeftRepeat=HAL1b:LINE:L1;Self chain;RightRepeat=HAL1b:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs72413604 (chr19:34642037-34648020);Frequency=0.59
chr19	CG	SV	34642029	34642397	65	+	.	ID=1534;Type=deletion;Left=chr19:34642029-34642397;Right=chr19:34648012-34648513
chr19	CG	SV	34648012	34648513	65	+	.	ID=1534;Type=deletion;Left=chr19:34642029-34642397;Right=chr19:34648012-34648513
chr19	CG	SV	35080655	35085372	26	.	.	ID=1533;Type=deletion;Left=chr19:35080655-35081041+;Right=chr19:35084966-35085372+;Distance=4311;DiscordantMatePairAlignments=26;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem ATTTTT;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	35080655	35081041	26	+	.	ID=1533;Type=deletion;Left=chr19:35080655-35081041;Right=chr19:35084966-35085372
chr19	CG	SV	35084966	35085372	26	+	.	ID=1533;Type=deletion;Left=chr19:35080655-35081041;Right=chr19:35084966-35085372
chr19	CG	SV	35979345	35981828	24	.	.	ID=1531;Type=deletion;Left=chr19:35979345-35979815+;Right=chr19:35981618-35981828+;Distance=2273;DiscordantMatePairAlignments=24;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs66944303 (chr19:35979085-35981358);Frequency=0.94
chr19	CG	SV	35979345	35979815	24	+	.	ID=1531;Type=deletion;Left=chr19:35979345-35979815;Right=chr19:35981618-35981828
chr19	CG	SV	35981618	35981828	24	+	.	ID=1531;Type=deletion;Left=chr19:35979345-35979815;Right=chr19:35981618-35981828
chr19	CG	SV	36444468	36758282	33	.	.	ID=566;Type=tandem-duplication;Left=chr19:36444468-36444847-;Right=chr19:36757936-36758282-;Distance=313435;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	36444468	36444847	33	-	.	ID=566;Type=tandem-duplication;Left=chr19:36444468-36444847;Right=chr19:36757936-36758282
chr19	CG	SV	36757936	36758282	33	-	.	ID=566;Type=tandem-duplication;Left=chr19:36444468-36444847;Right=chr19:36757936-36758282
chr19	CG	SV	37778234	37779108	20	.	.	ID=565;Type=tandem-duplication;Left=chr19:37778234-37778643-;Right=chr19:37778961-37779108-;Distance=465;DiscordantMatePairAlignments=20;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr19	CG	SV	37778234	37778643	20	-	.	ID=565;Type=tandem-duplication;Left=chr19:37778234-37778643;Right=chr19:37778961-37779108
chr19	CG	SV	37778961	37779108	20	-	.	ID=565;Type=tandem-duplication;Left=chr19:37778234-37778643;Right=chr19:37778961-37779108
chr19	CG	SV	42152628	42153424	16	.	.	ID=1530;Type=deletion;Left=chr19:42152628-42153041+;Right=chr19:42153179-42153424+;Distance=551;DiscordantMatePairAlignments=16;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr19	CG	SV	42152628	42153041	16	+	.	ID=1530;Type=deletion;Left=chr19:42152628-42153041;Right=chr19:42153179-42153424
chr19	CG	SV	42153179	42153424	16	+	.	ID=1530;Type=deletion;Left=chr19:42152628-42153041;Right=chr19:42153179-42153424
chr19	CG	SV	48220663	48548654	22	.	.	ID=563;Type=tandem-duplication;Left=chr19:48220663-48220955-;Right=chr19:48548256-48548654-;Distance=327699;DiscordantMatePairAlignments=22;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=NM_001113410:-;NM_002785:-;NM_203287:-;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	48220663	48220955	22	-	.	ID=563;Type=tandem-duplication;Left=chr19:48220663-48220955;Right=chr19:48548256-48548654
chr19	CG	SV	48548256	48548654	22	-	.	ID=563;Type=tandem-duplication;Left=chr19:48220663-48220955;Right=chr19:48548256-48548654
chr19	CG	SV	48874714	48875788	32	.	.	ID=562;Type=tandem-duplication;Left=chr19:48874714-48875200-;Right=chr19:48875655-48875788-;Distance=588;DiscordantMatePairAlignments=32;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	48874714	48875200	32	-	.	ID=562;Type=tandem-duplication;Left=chr19:48874714-48875200;Right=chr19:48875655-48875788
chr19	CG	SV	48875655	48875788	32	-	.	ID=562;Type=tandem-duplication;Left=chr19:48874714-48875200;Right=chr19:48875655-48875788
chr19	CG	SV	57787834	57789722	11	.	.	ID=1525;Type=deletion;Left=chr19:57787834-57788256+;Right=chr19:57789436-57789722+;Distance=1602;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72196700 (chr19:57787818-57789420);Frequency=0.47
chr19	CG	SV	57787834	57788256	11	+	.	ID=1525;Type=deletion;Left=chr19:57787834-57788256;Right=chr19:57789436-57789722
chr19	CG	SV	57789436	57789722	11	+	.	ID=1525;Type=deletion;Left=chr19:57787834-57788256;Right=chr19:57789436-57789722
chr19	CG	SV	58380998	58384264	35	.	.	ID=1522;Type=deletion;Left=chr19:58380998-58381287+;Right=chr19:58383780-58384264+;Distance=2782;DiscordantMatePairAlignments=35;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;Tandem T;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_024733:-;RightGenes=NM_024733:-;XRef=;Frequency=1.00
chr19	CG	SV	58380998	58381287	35	+	.	ID=1522;Type=deletion;Left=chr19:58380998-58381287;Right=chr19:58383780-58384264
chr19	CG	SV	58383780	58384264	35	+	.	ID=1522;Type=deletion;Left=chr19:58380998-58381287;Right=chr19:58383780-58384264
chr19	CG	SV	60296573	60297846	15	.	.	ID=1521;Type=deletion;Left=chr19:60296573-60296886+;Right=chr19:60297480-60297846+;Distance=907;DiscordantMatePairAlignments=15;LeftRepeat=MSR1:Satellite:Satellite;Self chain;Tandem period 109;Tandem period 36;Tandem period 73;RightRepeat=MSR1:Satellite:Satellite;Self chain;Tandem period 109;Tandem period 36;Tandem period 73;LeftGenes=NM_017607:-;RightGenes=NM_017607:-;XRef=;Frequency=0.82
chr19	CG	SV	60296573	60296886	15	+	.	ID=1521;Type=deletion;Left=chr19:60296573-60296886;Right=chr19:60297480-60297846
chr19	CG	SV	60297480	60297846	15	+	.	ID=1521;Type=deletion;Left=chr19:60296573-60296886;Right=chr19:60297480-60297846
chr19	CG	SV	60733659	60734195	10	.	.	ID=1519;Type=complex;Left=chr19:60733659-60734158+;Right=chr19:60733995-60734195+;Distance=336;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 131;Tandem period 168;Tandem period 57;RightRepeat=Self chain;Tandem period 168;Tandem period 37;Tandem period 38;LeftGenes=NM_001101401:-;RightGenes=NM_001101401:-;XRef=;Frequency=1.00
chr19	CG	SV	60733659	60734158	10	+	.	ID=1519;Type=complex;Left=chr19:60733659-60734158;Right=chr19:60733995-60734195
chr19	CG	SV	60733995	60734195	10	+	.	ID=1519;Type=complex;Left=chr19:60733659-60734158;Right=chr19:60733995-60734195
chr19	CG	SV	60733675	60734432	41	.	.	ID=1518;Type=complex;Left=chr19:60733675-60734070+;Right=chr19:60734011-60734432+;Distance=336;DiscordantMatePairAlignments=41;LeftRepeat=Self chain;Tandem period 131;Tandem period 168;Tandem period 19;Tandem period 57;RightRepeat=Self chain;Tandem period 37;Tandem period 38;LeftGenes=NM_001101401:-;RightGenes=NM_001101401:-;XRef=rs71171963 (chr19:60733648-60733984);Frequency=1.00
chr19	CG	SV	60733675	60734070	41	+	.	ID=1518;Type=complex;Left=chr19:60733675-60734070;Right=chr19:60734011-60734432
chr19	CG	SV	60734011	60734432	41	+	.	ID=1518;Type=complex;Left=chr19:60733675-60734070;Right=chr19:60734011-60734432
chr19	CG	SV	61509553	61510549	15	.	.	ID=1516;Type=deletion;Left=chr19:61509553-61509799+;Right=chr19:61510393-61510549+;Distance=840;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem period 84;RightRepeat=Self chain;Tandem period 84;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr19	CG	SV	61509553	61509799	15	+	.	ID=1516;Type=deletion;Left=chr19:61509553-61509799;Right=chr19:61510393-61510549
chr19	CG	SV	61510393	61510549	15	+	.	ID=1516;Type=deletion;Left=chr19:61509553-61509799;Right=chr19:61510393-61510549
chr19	CG	SV	61558270	61562166	32	.	.	ID=1515;Type=deletion;Left=chr19:61558270-61558741+;Right=chr19:61561735-61562166+;Distance=3465;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;RightRepeat=L1PA10:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs72037353 (chr19:61558270-61561735);Frequency=0.12
chr19	CG	SV	61558270	61558741	32	+	.	ID=1515;Type=deletion;Left=chr19:61558270-61558741;Right=chr19:61561735-61562166
chr19	CG	SV	61561735	61562166	32	+	.	ID=1515;Type=deletion;Left=chr19:61558270-61558741;Right=chr19:61561735-61562166
chr19	CG	SV	63309600	63310365	10	.	.	ID=1514;Type=deletion;Left=chr19:63309600-63310020+;Right=chr19:63309940-63310365+;Distance=340;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_001145542:-;RightGenes=NM_001145542:-;XRef=rs71171968 (chr19:63309581-63309912);Frequency=0.88
chr19	CG	SV	63309600	63310020	10	+	.	ID=1514;Type=deletion;Left=chr19:63309600-63310020;Right=chr19:63309940-63310365
chr19	CG	SV	63309940	63310365	10	+	.	ID=1514;Type=deletion;Left=chr19:63309600-63310020;Right=chr19:63309940-63310365
chr20	CG	SV	1337146	1339245	60	.	.	ID=1512;Type=deletion;Left=chr20:1337146-1337603+;Right=chr20:1338817-1339245+;Distance=1671;DiscordantMatePairAlignments=60;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs66897164 (chr20:1337143-1338814);Frequency=0.94
chr20	CG	SV	1337146	1337603	60	+	.	ID=1512;Type=deletion;Left=chr20:1337146-1337603;Right=chr20:1338817-1339245
chr20	CG	SV	1338817	1339245	60	+	.	ID=1512;Type=deletion;Left=chr20:1337146-1337603;Right=chr20:1338817-1339245
chr20	CG	SV	1943501	1945853	13	.	.	ID=1511;Type=deletion;Left=chr20:1943501-1943865+;Right=chr20:1945532-1945853+;Distance=2031;DiscordantMatePairAlignments=13;LeftRepeat=L1MD2:LINE:L1;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr20	CG	SV	1943501	1943865	13	+	.	ID=1511;Type=deletion;Left=chr20:1943501-1943865;Right=chr20:1945532-1945853
chr20	CG	SV	1945532	1945853	13	+	.	ID=1511;Type=deletion;Left=chr20:1943501-1943865;Right=chr20:1945532-1945853
chr20	CG	SV	2164826	2165103	117	.	.	ID=557;Type=tandem-duplication;Left=chr20:2164826-2164983-;Right=chr20:2164965-2165103-;Distance=120;DiscordantMatePairAlignments=117;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr20	CG	SV	2164826	2164983	117	-	.	ID=557;Type=tandem-duplication;Left=chr20:2164826-2164983;Right=chr20:2164965-2165103
chr20	CG	SV	2164965	2165103	117	-	.	ID=557;Type=tandem-duplication;Left=chr20:2164826-2164983;Right=chr20:2164965-2165103
chr20	CG	SV	2307903	2308925	27	.	.	ID=1510;Type=deletion;Left=chr20:2307903-2308110+;Right=chr20:2308608-2308925+;Distance=705;DiscordantMatePairAlignments=27;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67473611 (chr20:2307903-2308608);Frequency=0.76
chr20	CG	SV	2307903	2308110	27	+	.	ID=1510;Type=deletion;Left=chr20:2307903-2308110;Right=chr20:2308608-2308925
chr20	CG	SV	2308608	2308925	27	+	.	ID=1510;Type=deletion;Left=chr20:2307903-2308110;Right=chr20:2308608-2308925
chr20	CG	SV	4879297	4920115	27	.	.	ID=1509;Type=deletion;Left=chr20:4879297-4879717+;Right=chr20:4919975-4920115+;Distance=40678;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=NM_005116:-;NM_203327:-;RightGenes=NM_005116:-;NM_203327:-;XRef=;Frequency=0.00
chr20	CG	SV	4879297	4879717	27	+	.	ID=1509;Type=deletion;Left=chr20:4879297-4879717;Right=chr20:4919975-4920115
chr20	CG	SV	4919975	4920115	27	+	.	ID=1509;Type=deletion;Left=chr20:4879297-4879717;Right=chr20:4919975-4920115
chr20	CG	SV	6098959	6099844	20	.	.	ID=1508;Type=deletion;Left=chr20:6098959-6099305+;Right=chr20:6099291-6099844+;Distance=332;DiscordantMatePairAlignments=20;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs36062344 (chr20:6098959-6099291);Frequency=0.88
chr20	CG	SV	6098959	6099305	20	+	.	ID=1508;Type=deletion;Left=chr20:6098959-6099305;Right=chr20:6099291-6099844
chr20	CG	SV	6099291	6099844	20	+	.	ID=1508;Type=deletion;Left=chr20:6098959-6099305;Right=chr20:6099291-6099844
chr20	CG	SV	7044778	7051272	23	.	.	ID=1507;Type=deletion;Left=chr20:7044778-7045153+;Right=chr20:7050843-7051272+;Distance=6065;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=L1HS:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66718658 (chr20:7044793-7050858);Frequency=0.35
chr20	CG	SV	7044778	7045153	23	+	.	ID=1507;Type=deletion;Left=chr20:7044778-7045153;Right=chr20:7050843-7051272
chr20	CG	SV	7050843	7051272	23	+	.	ID=1507;Type=deletion;Left=chr20:7044778-7045153;Right=chr20:7050843-7051272
chr20	CG	SV	14547213	14811719	44	.	.	ID=1502;Type=deletion;Left=chr20:14547213-14547645+;Right=chr20:14811306-14811719+;Distance=264093;DiscordantMatePairAlignments=44;LeftRepeat=;RightRepeat=;LeftGenes=NM_080676:+;RightGenes=NM_080676:+;XRef=;Frequency=0.00
chr20	CG	SV	14547213	14547645	44	+	.	ID=1502;Type=deletion;Left=chr20:14547213-14547645;Right=chr20:14811306-14811719
chr20	CG	SV	14811306	14811719	44	+	.	ID=1502;Type=deletion;Left=chr20:14547213-14547645;Right=chr20:14811306-14811719
chr20	CG	SV	14991805	15633090	37	.	.	ID=1501;Type=deletion;Left=chr20:14991805-14992252+;Right=chr20:15632692-15633090+;Distance=640887;DiscordantMatePairAlignments=37;LeftRepeat=;RightRepeat=MLT1F:LTR:MaLR;LeftGenes=NM_080676:+;RightGenes=NM_001033087:+;NM_080676:+;XRef=;Frequency=0.00
chr20	CG	SV	14991805	14992252	37	+	.	ID=1501;Type=deletion;Left=chr20:14991805-14992252;Right=chr20:15632692-15633090
chr20	CG	SV	15632692	15633090	37	+	.	ID=1501;Type=deletion;Left=chr20:14991805-14992252;Right=chr20:15632692-15633090
chr20	CG	SV	15249734	15252219	46	.	.	ID=1499;Type=deletion;Left=chr20:15249734-15250127+;Right=chr20:15251771-15252219+;Distance=2037;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=;LeftGenes=NM_001033087:+;NM_080676:+;RightGenes=NM_001033087:+;NM_080676:+;XRef=rs71703687 (chr20:15249734-15251771);Frequency=0.47
chr20	CG	SV	15249734	15250127	46	+	.	ID=1499;Type=deletion;Left=chr20:15249734-15250127;Right=chr20:15251771-15252219
chr20	CG	SV	15251771	15252219	46	+	.	ID=1499;Type=deletion;Left=chr20:15249734-15250127;Right=chr20:15251771-15252219
chr20	CG	SV	21234118	21237105	41	.	.	ID=1494;Type=deletion;Left=chr20:21234118-21234541+;Right=chr20:21236800-21237105+;Distance=2682;DiscordantMatePairAlignments=41;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_012255:+;RightGenes=NM_012255:+;XRef=rs67065922 (chr20:21234127-21236809);Frequency=0.88
chr20	CG	SV	21234118	21234541	41	+	.	ID=1494;Type=deletion;Left=chr20:21234118-21234541;Right=chr20:21236800-21237105
chr20	CG	SV	21236800	21237105	41	+	.	ID=1494;Type=deletion;Left=chr20:21234118-21234541;Right=chr20:21236800-21237105
chr20	CG	SV	23051193	23051968	28	.	.	ID=1492;Type=deletion;Left=chr20:23051193-23051575+;Right=chr20:23051633-23051968+;Distance=440;DiscordantMatePairAlignments=28;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr20	CG	SV	23051193	23051575	28	+	.	ID=1492;Type=deletion;Left=chr20:23051193-23051575;Right=chr20:23051633-23051968
chr20	CG	SV	23051633	23051968	28	+	.	ID=1492;Type=deletion;Left=chr20:23051193-23051575;Right=chr20:23051633-23051968
chr20	CG	SV	28252473	28255452	53	.	.	ID=1489;Type=deletion;Left=chr20:28252473-28252838+;Right=chr20:28254895-28255452+;Distance=2422;DiscordantMatePairAlignments=53;LeftRepeat=Self chain;RightRepeat=(TAAA)n:Simple_repeat:Simple_repeat;Self chain;Tandem AAAT;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr20	CG	SV	28252473	28252838	53	+	.	ID=1489;Type=deletion;Left=chr20:28252473-28252838;Right=chr20:28254895-28255452
chr20	CG	SV	28254895	28255452	53	+	.	ID=1489;Type=deletion;Left=chr20:28252473-28252838;Right=chr20:28254895-28255452
chr20	CG	SV	32279598	32283269	71	.	.	ID=1486;Type=deletion;Left=chr20:32279598-32279980+;Right=chr20:32282895-32283269+;Distance=3297;DiscordantMatePairAlignments=71;LeftRepeat=;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71190078 (chr20:32279599-32282896);Frequency=1.00
chr20	CG	SV	32279598	32279980	71	+	.	ID=1486;Type=deletion;Left=chr20:32279598-32279980;Right=chr20:32282895-32283269
chr20	CG	SV	32282895	32283269	71	+	.	ID=1486;Type=deletion;Left=chr20:32279598-32279980;Right=chr20:32282895-32283269
chr20	CG	SV	32705610	32708143	12	.	.	ID=1484;Type=deletion;Left=chr20:32705610-32705992+;Right=chr20:32708035-32708143+;Distance=2425;DiscordantMatePairAlignments=12;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_080476:-;RightGenes=NM_080476:-;XRef=rs67282265 (chr20:32705520-32707945);Frequency=0.59
chr20	CG	SV	32705610	32705992	12	+	.	ID=1484;Type=deletion;Left=chr20:32705610-32705992;Right=chr20:32708035-32708143
chr20	CG	SV	32708035	32708143	12	+	.	ID=1484;Type=deletion;Left=chr20:32705610-32705992;Right=chr20:32708035-32708143
chr20	CG	SV	33085327	33085991	13	.	.	ID=1483;Type=deletion;Left=chr20:33085327-33085728+;Right=chr20:33085649-33085991+;Distance=322;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_015638:-;NM_199368:-;RightGenes=NM_015638:-;NM_199368:-;XRef=rs72263875 (chr20:33085327-33085649);Frequency=1.00
chr20	CG	SV	33085327	33085728	13	+	.	ID=1483;Type=deletion;Left=chr20:33085327-33085728;Right=chr20:33085649-33085991
chr20	CG	SV	33085649	33085991	13	+	.	ID=1483;Type=deletion;Left=chr20:33085327-33085728;Right=chr20:33085649-33085991
chr20	CG	SV	41458018	41459597	59	.	.	ID=1481;Type=deletion;Left=chr20:41458018-41458592+;Right=chr20:41459216-41459597+;Distance=1198;DiscordantMatePairAlignments=59;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67207892 (chr20:41458026-41459224);Frequency=0.94
chr20	CG	SV	41458018	41458592	59	+	.	ID=1481;Type=deletion;Left=chr20:41458018-41458592;Right=chr20:41459216-41459597
chr20	CG	SV	41459216	41459597	59	+	.	ID=1481;Type=deletion;Left=chr20:41458018-41458592;Right=chr20:41459216-41459597
chr20	CG	SV	41758293	41759057	72	.	.	ID=554;Type=tandem-duplication;Left=chr20:41758293-41758553-;Right=chr20:41758587-41759057-;Distance=504;DiscordantMatePairAlignments=72;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_002466:+;RightGenes=NM_002466:+;XRef=;Frequency=1.00
chr20	CG	SV	41758293	41758553	72	-	.	ID=554;Type=tandem-duplication;Left=chr20:41758293-41758553;Right=chr20:41758587-41759057
chr20	CG	SV	41758587	41759057	72	-	.	ID=554;Type=tandem-duplication;Left=chr20:41758293-41758553;Right=chr20:41758587-41759057
chr20	CG	SV	43637478	43641173	33	.	.	ID=1479;Type=deletion;Left=chr20:43637478-43637871+;Right=chr20:43640716-43641173+;Distance=3238;DiscordantMatePairAlignments=33;LeftRepeat=L1M3:LINE:L1;RightRepeat=;LeftGenes=NM_130896:-;NM_181510:-;RightGenes=NM_130896:-;NM_181510:-;XRef=;Frequency=0.29
chr20	CG	SV	43637478	43637871	33	+	.	ID=1479;Type=deletion;Left=chr20:43637478-43637871;Right=chr20:43640716-43641173
chr20	CG	SV	43640716	43641173	33	+	.	ID=1479;Type=deletion;Left=chr20:43637478-43637871;Right=chr20:43640716-43641173
chr20	CG	SV	43968884	43969597	54	.	.	ID=1478;Type=deletion;Left=chr20:43968884-43969328+;Right=chr20:43969320-43969597+;Distance=436;DiscordantMatePairAlignments=54;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_006227:-;NM_182676:-;RightGenes=NM_006227:-;NM_182676:-;XRef=rs71981103 (chr20:43968778-43969214);Frequency=0.88
chr20	CG	SV	43968884	43969328	54	+	.	ID=1478;Type=deletion;Left=chr20:43968884-43969328;Right=chr20:43969320-43969597
chr20	CG	SV	43969320	43969597	54	+	.	ID=1478;Type=deletion;Left=chr20:43968884-43969328;Right=chr20:43969320-43969597
chr20	CG	SV	46808829	46811486	58	.	.	ID=1477;Type=deletion;Left=chr20:46808829-46809279+;Right=chr20:46811245-46811486+;Distance=2416;DiscordantMatePairAlignments=58;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_020820:-;RightGenes=NM_020820:-;XRef=;Frequency=0.00
chr20	CG	SV	46808829	46809279	58	+	.	ID=1477;Type=deletion;Left=chr20:46808829-46809279;Right=chr20:46811245-46811486
chr20	CG	SV	46811245	46811486	58	+	.	ID=1477;Type=deletion;Left=chr20:46808829-46809279;Right=chr20:46811245-46811486
chr20	CG	SV	52080477	52091715	31	.	.	ID=1476;Type=deletion;Left=chr20:52080477-52080977+;Right=chr20:52091415-52091715+;Distance=10938;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=L1MC4a:LINE:L1;LeftGenes=NM_003657:-;RightGenes=NM_003657:-;XRef=;Frequency=0.29
chr20	CG	SV	52080477	52080977	31	+	.	ID=1476;Type=deletion;Left=chr20:52080477-52080977;Right=chr20:52091415-52091715
chr20	CG	SV	52091415	52091715	31	+	.	ID=1476;Type=deletion;Left=chr20:52080477-52080977;Right=chr20:52091415-52091715
chr20	CG	SV	53868024	53874162	11	.	.	ID=1473;Type=complex;Left=chr20:53868024-53868431+;Right=chr20:53874030-53874162+;Distance=6006;DiscordantMatePairAlignments=11;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67942761 (chr20:53868017-53874023);Frequency=0.94
chr20	CG	SV	53868024	53868431	11	+	.	ID=1473;Type=complex;Left=chr20:53868024-53868431;Right=chr20:53874030-53874162
chr20	CG	SV	53874030	53874162	11	+	.	ID=1473;Type=complex;Left=chr20:53868024-53868431;Right=chr20:53874030-53874162
chr20	CG	SV	53868030	53874502	68	.	.	ID=1472;Type=complex;Left=chr20:53868030-53868437+;Right=chr20:53874036-53874502+;Distance=6006;DiscordantMatePairAlignments=68;LeftRepeat=L1HS:LINE:L1;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs71190099 (chr20:53868030-53874036);Frequency=0.94
chr20	CG	SV	53868030	53868437	68	+	.	ID=1472;Type=complex;Left=chr20:53868030-53868437;Right=chr20:53874036-53874502
chr20	CG	SV	53874036	53874502	68	+	.	ID=1472;Type=complex;Left=chr20:53868030-53868437;Right=chr20:53874036-53874502
chr20	CG	SV	53896641	53897408	11	.	.	ID=1471;Type=deletion;Left=chr20:53896641-53897038+;Right=chr20:53896958-53897408+;Distance=317;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs67501559 (chr20:53896641-53896958);Frequency=0.88
chr20	CG	SV	53896641	53897038	11	+	.	ID=1471;Type=deletion;Left=chr20:53896641-53897038;Right=chr20:53896958-53897408
chr20	CG	SV	53896958	53897408	11	+	.	ID=1471;Type=deletion;Left=chr20:53896641-53897038;Right=chr20:53896958-53897408
chr20	CG	SV	55512664	55514275	32	.	.	ID=1470;Type=deletion;Left=chr20:55512664-55513070+;Right=chr20:55513944-55514275+;Distance=1280;DiscordantMatePairAlignments=32;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_080618:-;RightGenes=NM_080618:-;XRef=;Frequency=0.18
chr20	CG	SV	55512664	55513070	32	+	.	ID=1470;Type=deletion;Left=chr20:55512664-55513070;Right=chr20:55513944-55514275
chr20	CG	SV	55513944	55514275	32	+	.	ID=1470;Type=deletion;Left=chr20:55512664-55513070;Right=chr20:55513944-55514275
chr20	CG	SV	57156850	57157634	35	.	.	ID=1468;Type=deletion;Left=chr20:57156850-57157254+;Right=chr20:57157184-57157634+;Distance=334;DiscordantMatePairAlignments=35;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs35933436 (chr20:57156839-57157173);Frequency=0.12
chr20	CG	SV	57156850	57157254	35	+	.	ID=1468;Type=deletion;Left=chr20:57156850-57157254;Right=chr20:57157184-57157634
chr20	CG	SV	57157184	57157634	35	+	.	ID=1468;Type=deletion;Left=chr20:57156850-57157254;Right=chr20:57157184-57157634
chr20	CG	SV	58545071	58558702	38	.	.	ID=1467;Type=deletion;Left=chr20:58545071-58545447+;Right=chr20:58558265-58558702+;Distance=13194;DiscordantMatePairAlignments=38;LeftRepeat=AluSq:SINE:Alu;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr20	CG	SV	58545071	58545447	38	+	.	ID=1467;Type=deletion;Left=chr20:58545071-58545447;Right=chr20:58558265-58558702
chr20	CG	SV	58558265	58558702	38	+	.	ID=1467;Type=deletion;Left=chr20:58545071-58545447;Right=chr20:58558265-58558702
chr20	CG	SV	59337608	59337925	24	.	.	ID=552;Type=tandem-duplication;Left=chr20:59337608-59337734-;Right=chr20:59337738-59337925-;Distance=191;DiscordantMatePairAlignments=24;LeftRepeat=;RightRepeat=;LeftGenes=NM_001794:+;RightGenes=NM_001794:+;XRef=;Frequency=0.88
chr20	CG	SV	59337608	59337734	24	-	.	ID=552;Type=tandem-duplication;Left=chr20:59337608-59337734;Right=chr20:59337738-59337925
chr20	CG	SV	59337738	59337925	24	-	.	ID=552;Type=tandem-duplication;Left=chr20:59337608-59337734;Right=chr20:59337738-59337925
chr20	CG	SV	59407575	59408409	16	.	.	ID=1466;Type=deletion;Left=chr20:59407575-59407946+;Right=chr20:59407896-59408409+;Distance=321;DiscordantMatePairAlignments=16;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001794:+;RightGenes=NM_001794:+;XRef=rs66605952 (chr20:59407575-59407896);Frequency=0.82
chr20	CG	SV	59407575	59407946	16	+	.	ID=1466;Type=deletion;Left=chr20:59407575-59407946;Right=chr20:59407896-59408409
chr20	CG	SV	59407896	59408409	16	+	.	ID=1466;Type=deletion;Left=chr20:59407575-59407946;Right=chr20:59407896-59408409
chr20	CG	SV	61195143	61196516	148	.	.	ID=1464;Type=deletion;Left=chr20:61195143-61195579+;Right=chr20:61196042-61196516+;Distance=899;DiscordantMatePairAlignments=148;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67749901 (chr20:61195143-61196041);Frequency=1.00
chr20	CG	SV	61195143	61195579	148	+	.	ID=1464;Type=deletion;Left=chr20:61195143-61195579;Right=chr20:61196042-61196516
chr20	CG	SV	61196042	61196516	148	+	.	ID=1464;Type=deletion;Left=chr20:61195143-61195579;Right=chr20:61196042-61196516
chr20	CG	SV	61738152	61738779	11	.	.	ID=1462;Type=deletion;Left=chr20:61738152-61738523+;Right=chr20:61738663-61738779+;Distance=511;DiscordantMatePairAlignments=11;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr20	CG	SV	61738152	61738523	11	+	.	ID=1462;Type=deletion;Left=chr20:61738152-61738523;Right=chr20:61738663-61738779
chr20	CG	SV	61738663	61738779	11	+	.	ID=1462;Type=deletion;Left=chr20:61738152-61738523;Right=chr20:61738663-61738779
chr20	CG	SV	61862533	61863260	35	.	.	ID=1461;Type=deletion;Left=chr20:61862533-61863005+;Right=chr20:61863075-61863260+;Distance=542;DiscordantMatePairAlignments=35;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_025224:-;RightGenes=NM_025224:-;XRef=;Frequency=0.00
chr20	CG	SV	61862533	61863005	35	+	.	ID=1461;Type=deletion;Left=chr20:61862533-61863005;Right=chr20:61863075-61863260
chr20	CG	SV	61863075	61863260	35	+	.	ID=1461;Type=deletion;Left=chr20:61862533-61863005;Right=chr20:61863075-61863260
chr20	CG	SV	61981514	61982366	13	.	.	ID=1460;Type=deletion;Left=chr20:61981514-61981792+;Right=chr20:61982274-61982366+;Distance=760;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 40;RightRepeat=Self chain;LeftGenes=NM_003288:+;NM_199359:+;NM_199360:+;NM_199361:+;NM_199362:+;NM_199363:+;RightGenes=NM_003288:+;NM_199359:+;NM_199360:+;NM_199361:+;NM_199362:+;NM_199363:+;XRef=;Frequency=0.10
chr20	CG	SV	61981514	61981792	13	+	.	ID=1460;Type=deletion;Left=chr20:61981514-61981792;Right=chr20:61982274-61982366
chr20	CG	SV	61982274	61982366	13	+	.	ID=1460;Type=deletion;Left=chr20:61981514-61981792;Right=chr20:61982274-61982366
chr20	CG	SV	62066708	62068296	143	.	.	ID=1459;Type=deletion;Left=chr20:62066708-62067216+;Right=chr20:62067942-62068296+;Distance=1234;DiscordantMatePairAlignments=143;LeftRepeat=Self chain;Tandem period 43;RightRepeat=Self chain;Tandem period 43;LeftGenes=NM_020713:-;RightGenes=NM_020713:-;XRef=;Frequency=0.65
chr20	CG	SV	62066708	62067216	143	+	.	ID=1459;Type=deletion;Left=chr20:62066708-62067216;Right=chr20:62067942-62068296
chr20	CG	SV	62067942	62068296	143	+	.	ID=1459;Type=deletion;Left=chr20:62066708-62067216;Right=chr20:62067942-62068296
chr20	CG	SV	62192682	62193398	16	.	.	ID=1458;Type=deletion;Left=chr20:62192682-62193119+;Right=chr20:62193150-62193398+;Distance=468;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 39;RightRepeat=Self chain;Tandem period 39;LeftGenes=NM_000913:+;NM_182647:+;RightGenes=NM_000913:+;NM_182647:+;XRef=;Frequency=0.94
chr20	CG	SV	62192682	62193119	16	+	.	ID=1458;Type=deletion;Left=chr20:62192682-62193119;Right=chr20:62193150-62193398
chr20	CG	SV	62193150	62193398	16	+	.	ID=1458;Type=deletion;Left=chr20:62192682-62193119;Right=chr20:62193150-62193398
chr21	CG	SV	10058041	10059015	12	.	.	ID=1439;Type=deletion;Left=chr21:10058041-10058457+;Right=chr21:10058608-10059015+;Distance=567;DiscordantMatePairAlignments=12;LeftRepeat=MER33:DNA:MER1_type;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_181704:-;NM_182481:-;NM_182482:-;NM_182484:-;RightGenes=NM_181704:-;NM_182481:-;NM_182482:-;NM_182484:-;XRef=;Frequency=0.88
chr21	CG	SV	10058041	10058457	12	+	.	ID=1439;Type=deletion;Left=chr21:10058041-10058457;Right=chr21:10058608-10059015
chr21	CG	SV	10058608	10059015	12	+	.	ID=1439;Type=deletion;Left=chr21:10058041-10058457;Right=chr21:10058608-10059015
chr21	CG	SV	10155097	10156388	14	.	.	ID=1437;Type=deletion;Left=chr21:10155097-10155439+;Right=chr21:10156139-10156388+;Distance=1042;DiscordantMatePairAlignments=14;LeftRepeat=SegDup;Self chain;RightRepeat=AluJo:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr21	CG	SV	10155097	10155439	14	+	.	ID=1437;Type=deletion;Left=chr21:10155097-10155439;Right=chr21:10156139-10156388
chr21	CG	SV	10156139	10156388	14	+	.	ID=1437;Type=deletion;Left=chr21:10155097-10155439;Right=chr21:10156139-10156388
chr21	CG	SV	17534203	17535964	30	.	.	ID=1432;Type=deletion;Left=chr21:17534203-17534613+;Right=chr21:17535507-17535964+;Distance=1304;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;RightRepeat=L1PA7:LINE:L1;Tandem period 27;LeftGenes=;RightGenes=;XRef=rs71781010 (chr21:17534203-17535507);Frequency=0.76
chr21	CG	SV	17534203	17534613	30	+	.	ID=1432;Type=deletion;Left=chr21:17534203-17534613;Right=chr21:17535507-17535964
chr21	CG	SV	17535507	17535964	30	+	.	ID=1432;Type=deletion;Left=chr21:17534203-17534613;Right=chr21:17535507-17535964
chr21	CG	SV	18248697	18251521	21	.	.	ID=1431;Type=deletion;Left=chr21:18248697-18249108+;Right=chr21:18251206-18251521+;Distance=2509;DiscordantMatePairAlignments=21;LeftRepeat=MLT2B1:LTR:ERVL;RightRepeat=MLT2B1:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr21	CG	SV	18248697	18249108	21	+	.	ID=1431;Type=deletion;Left=chr21:18248697-18249108;Right=chr21:18251206-18251521
chr21	CG	SV	18251206	18251521	21	+	.	ID=1431;Type=deletion;Left=chr21:18248697-18249108;Right=chr21:18251206-18251521
chr21	CG	SV	18835927	18836645	15	.	.	ID=1430;Type=deletion;Left=chr21:18835927-18836289+;Right=chr21:18836268-18836645+;Distance=341;DiscordantMatePairAlignments=15;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71729861 (chr21:18835927-18836268);Frequency=0.53
chr21	CG	SV	18835927	18836289	15	+	.	ID=1430;Type=deletion;Left=chr21:18835927-18836289;Right=chr21:18836268-18836645
chr21	CG	SV	18836268	18836645	15	+	.	ID=1430;Type=deletion;Left=chr21:18835927-18836289;Right=chr21:18836268-18836645
chr21	CG	SV	23296667	23297670	61	.	.	ID=1429;Type=deletion;Left=chr21:23296667-23297040+;Right=chr21:23297282-23297670+;Distance=615;DiscordantMatePairAlignments=61;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71775386 (chr21:23296667-23297282);Frequency=0.76
chr21	CG	SV	23296667	23297040	61	+	.	ID=1429;Type=deletion;Left=chr21:23296667-23297040;Right=chr21:23297282-23297670
chr21	CG	SV	23297282	23297670	61	+	.	ID=1429;Type=deletion;Left=chr21:23296667-23297040;Right=chr21:23297282-23297670
chr21	CG	SV	26295524	26297069	206	.	.	ID=30;Type=inversion;Left=chr21:26295524-26296022-;Right=chr21:26296577-26297069+;Distance=555;DiscordantMatePairAlignments=206;LeftRepeat=;RightRepeat=;LeftGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;RightGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;XRef=;Frequency=1.00
chr21	CG	SV	26295524	26296022	206	-	.	ID=30;Type=inversion;Left=chr21:26295524-26296022;Right=chr21:26296577-26297069
chr21	CG	SV	26296577	26297069	206	-	.	ID=30;Type=inversion;Left=chr21:26295524-26296022;Right=chr21:26296577-26297069
chr21	CG	SV	26296029	26296570	117	.	.	ID=3366;Type=inversion;Left=chr21:26296029-26296538+;Right=chr21:26296119-26296570-;Distance=541;DiscordantMatePairAlignments=117;LeftRepeat=;RightRepeat=;LeftGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;RightGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;XRef=;Frequency=1.00
chr21	CG	SV	26296029	26296538	117	+	.	ID=3366;Type=inversion;Left=chr21:26296029-26296538;Right=chr21:26296119-26296570
chr21	CG	SV	26296119	26296570	117	+	.	ID=3366;Type=inversion;Left=chr21:26296029-26296538;Right=chr21:26296119-26296570
chr21	CG	SV	26942553	26943503	40	.	.	ID=3365;Type=complex;Left=chr21:26942553-26942939+;Right=chr21:26943285-26943503-;Distance=950;DiscordantMatePairAlignments=40;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	26942553	26942939	40	+	.	ID=3365;Type=complex;Left=chr21:26942553-26942939;Right=chr21:26943285-26943503
chr21	CG	SV	26943285	26943503	40	+	.	ID=3365;Type=complex;Left=chr21:26942553-26942939;Right=chr21:26943285-26943503
chr21	CG	SV	26942291	26944048	80	.	.	ID=29;Type=complex;Left=chr21:26942291-26942553-;Right=chr21:26943597-26944048+;Distance=1044;DiscordantMatePairAlignments=80;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	26942291	26942553	80	-	.	ID=29;Type=complex;Left=chr21:26942291-26942553;Right=chr21:26943597-26944048
chr21	CG	SV	26943597	26944048	80	-	.	ID=29;Type=complex;Left=chr21:26942291-26942553;Right=chr21:26943597-26944048
chr21	CG	SV	29185626	29186292	12	.	.	ID=1426;Type=deletion;Left=chr21:29185626-29186044+;Right=chr21:29186175-29186292+;Distance=549;DiscordantMatePairAlignments=12;LeftRepeat=L1MC1:LINE:L1;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66547158 (chr21:29185404-29185953);Frequency=1.00
chr21	CG	SV	29185626	29186044	12	+	.	ID=1426;Type=deletion;Left=chr21:29185626-29186044;Right=chr21:29186175-29186292
chr21	CG	SV	29186175	29186292	12	+	.	ID=1426;Type=deletion;Left=chr21:29185626-29186044;Right=chr21:29186175-29186292
chr21	CG	SV	29474096	29474859	61	.	.	ID=1424;Type=deletion;Left=chr21:29474096-29474438+;Right=chr21:29474450-29474859+;Distance=354;DiscordantMatePairAlignments=61;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71197491 (chr21:29474096-29474450);Frequency=1.00
chr21	CG	SV	29474096	29474438	61	+	.	ID=1424;Type=deletion;Left=chr21:29474096-29474438;Right=chr21:29474450-29474859
chr21	CG	SV	29474450	29474859	61	+	.	ID=1424;Type=deletion;Left=chr21:29474096-29474438;Right=chr21:29474450-29474859
chr21	CG	SV	29523696	29524529	15	.	.	ID=1423;Type=deletion;Left=chr21:29523696-29524116+;Right=chr21:29524036-29524529+;Distance=340;DiscordantMatePairAlignments=15;LeftRepeat=L3:LINE:CR1;RightRepeat=L3:LINE:CR1;LeftGenes=NR_027072:+;RightGenes=NR_027072:+;XRef=rs6147472 (chr21:29523696-29524036);Frequency=1.00
chr21	CG	SV	29523696	29524116	15	+	.	ID=1423;Type=deletion;Left=chr21:29523696-29524116;Right=chr21:29524036-29524529
chr21	CG	SV	29524036	29524529	15	+	.	ID=1423;Type=deletion;Left=chr21:29523696-29524116;Right=chr21:29524036-29524529
chr21	CG	SV	38403424	38403928	17	.	.	ID=1420;Type=deletion;Left=chr21:38403424-38403967+;Right=chr21:38403794-38403928+;Distance=370;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem period 370;RightRepeat=Self chain;Tandem period 370;LeftGenes=NM_005867:-;RightGenes=NM_005867:-;XRef=;Frequency=1.00
chr21	CG	SV	38403424	38403967	17	+	.	ID=1420;Type=deletion;Left=chr21:38403424-38403967;Right=chr21:38403794-38403928
chr21	CG	SV	38403794	38403928	17	+	.	ID=1420;Type=deletion;Left=chr21:38403424-38403967;Right=chr21:38403794-38403928
chr21	CG	SV	38512409	38513171	22	.	.	ID=1419;Type=deletion;Left=chr21:38512409-38512904+;Right=chr21:38512755-38513171+;Distance=346;DiscordantMatePairAlignments=22;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66988326 (chr21:38512396-38512742);Frequency=1.00
chr21	CG	SV	38512409	38512904	22	+	.	ID=1419;Type=deletion;Left=chr21:38512409-38512904;Right=chr21:38512755-38513171
chr21	CG	SV	38512755	38513171	22	+	.	ID=1419;Type=deletion;Left=chr21:38512409-38512904;Right=chr21:38512755-38513171
chr21	CG	SV	41833816	41834630	72	.	.	ID=1414;Type=deletion;Left=chr21:41833816-41834266+;Right=chr21:41834266-41834630+;Distance=450;DiscordantMatePairAlignments=72;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr21	CG	SV	41833816	41834266	72	+	.	ID=1414;Type=deletion;Left=chr21:41833816-41834266;Right=chr21:41834266-41834630
chr21	CG	SV	41834266	41834630	72	+	.	ID=1414;Type=deletion;Left=chr21:41833816-41834266;Right=chr21:41834266-41834630
chr21	CG	SV	42099799	42100626	18	.	.	ID=1413;Type=deletion;Left=chr21:42099799-42099918+;Right=chr21:42100440-42100626+;Distance=641;DiscordantMatePairAlignments=18;LeftRepeat=(CCA)n:Simple_repeat:Simple_repeat;Tandem CAC;Tandem period 15;RightRepeat=(CCA)n:Simple_repeat:Simple_repeat;LeftGenes=NM_001040424:-;NM_022115:-;RightGenes=NM_001040424:-;NM_022115:-;XRef=;Frequency=1.00
chr21	CG	SV	42099799	42099918	18	+	.	ID=1413;Type=deletion;Left=chr21:42099799-42099918;Right=chr21:42100440-42100626
chr21	CG	SV	42100440	42100626	18	+	.	ID=1413;Type=deletion;Left=chr21:42099799-42099918;Right=chr21:42100440-42100626
chr21	CG	SV	42223189	42227069	247	.	.	ID=1411;Type=deletion;Left=chr21:42223189-42223682+;Right=chr21:42226558-42227069+;Distance=3369;DiscordantMatePairAlignments=247;LeftRepeat=LTR36:LTR:ERV1;RightRepeat=;LeftGenes=NM_015500:-;RightGenes=NM_015500:-;XRef=rs72055785 (chr21:42223185-42226554);Frequency=0.41
chr21	CG	SV	42223189	42223682	247	+	.	ID=1411;Type=deletion;Left=chr21:42223189-42223682;Right=chr21:42226558-42227069
chr21	CG	SV	42226558	42227069	247	+	.	ID=1411;Type=deletion;Left=chr21:42223189-42223682;Right=chr21:42226558-42227069
chr21	CG	SV	42577106	42577724	16	.	.	ID=1410;Type=deletion;Left=chr21:42577106-42577477+;Right=chr21:42577471-42577724+;Distance=365;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 121;Tandem period 60;RightRepeat=Self chain;LeftGenes=NM_004915:+;NM_016818:+;NM_207174:+;NM_207627:+;NM_207628:+;NM_207629:+;RightGenes=NM_004915:+;NM_016818:+;NM_207174:+;NM_207627:+;NM_207628:+;NM_207629:+;XRef=;Frequency=0.00
chr21	CG	SV	42577106	42577477	16	+	.	ID=1410;Type=deletion;Left=chr21:42577106-42577477;Right=chr21:42577471-42577724
chr21	CG	SV	42577471	42577724	16	+	.	ID=1410;Type=deletion;Left=chr21:42577106-42577477;Right=chr21:42577471-42577724
chr21	CG	SV	43794796	43798182	268	.	.	ID=1409;Type=deletion;Left=chr21:43794796-43795269+;Right=chr21:43797732-43798182+;Distance=2936;DiscordantMatePairAlignments=268;LeftRepeat=;RightRepeat=Tigger4(Zombi):DNA:MER2_type;LeftGenes=NM_007031:-;RightGenes=NM_007031:-;XRef=rs72438714 (chr21:43794796-43797732);Frequency=0.53
chr21	CG	SV	43794796	43795269	268	+	.	ID=1409;Type=deletion;Left=chr21:43794796-43795269;Right=chr21:43797732-43798182
chr21	CG	SV	43797732	43798182	268	+	.	ID=1409;Type=deletion;Left=chr21:43794796-43795269;Right=chr21:43797732-43798182
chr21	CG	SV	44443627	44445363	63	.	.	ID=1408;Type=deletion;Left=chr21:44443627-44444110+;Right=chr21:44445149-44445363+;Distance=1522;DiscordantMatePairAlignments=63;LeftRepeat=AluSq:SINE:Alu;RightRepeat=MER65B-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr21	CG	SV	44443627	44444110	63	+	.	ID=1408;Type=deletion;Left=chr21:44443627-44444110;Right=chr21:44445149-44445363
chr21	CG	SV	44445149	44445363	63	+	.	ID=1408;Type=deletion;Left=chr21:44443627-44444110;Right=chr21:44445149-44445363
chr21	CG	SV	45299291	45299463	283	.	.	ID=541;Type=tandem-duplication;Left=chr21:45299291-45299385-;Right=chr21:45299364-45299463-;Distance=78;DiscordantMatePairAlignments=283;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	45299291	45299385	283	-	.	ID=541;Type=tandem-duplication;Left=chr21:45299291-45299385;Right=chr21:45299364-45299463
chr21	CG	SV	45299364	45299463	283	-	.	ID=541;Type=tandem-duplication;Left=chr21:45299291-45299385;Right=chr21:45299364-45299463
chr21	CG	SV	46212457	46214605	19	.	.	ID=1403;Type=deletion;Left=chr21:46212457-46212864+;Right=chr21:46214160-46214605+;Distance=1703;DiscordantMatePairAlignments=19;LeftRepeat=L1MC4a:LINE:L1;Self chain;RightRepeat=MLT1B:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=rs72238485 (chr21:46212457-46214160);Frequency=0.94
chr21	CG	SV	46212457	46212864	19	+	.	ID=1403;Type=deletion;Left=chr21:46212457-46212864;Right=chr21:46214160-46214605
chr21	CG	SV	46214160	46214605	19	+	.	ID=1403;Type=deletion;Left=chr21:46212457-46212864;Right=chr21:46214160-46214605
chr22	CG	SV	16427375	16428040	19	.	.	ID=1399;Type=deletion;Left=chr22:16427375-16427861+;Right=chr22:16427733-16428040+;Distance=358;DiscordantMatePairAlignments=19;LeftRepeat=(TTTA)n:Simple_repeat:Simple_repeat;Self chain;Tandem TTTA;Tandem TTTTA;RightRepeat=Self chain;LeftGenes=NM_031481:+;RightGenes=NM_031481:+;XRef=rs66962360 (chr22:16427360-16427718);Frequency=0.94
chr22	CG	SV	16427375	16427861	19	+	.	ID=1399;Type=deletion;Left=chr22:16427375-16427861;Right=chr22:16427733-16428040
chr22	CG	SV	16427733	16428040	19	+	.	ID=1399;Type=deletion;Left=chr22:16427375-16427861;Right=chr22:16427733-16428040
chr22	CG	SV	16437874	16440778	11	.	.	ID=1398;Type=deletion;Left=chr22:16437874-16438224+;Right=chr22:16440580-16440778+;Distance=2706;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_031481:+;RightGenes=NM_031481:+;XRef=rs71187331 (chr22:16437770-16440477);Frequency=0.94
chr22	CG	SV	16437874	16438224	11	+	.	ID=1398;Type=deletion;Left=chr22:16437874-16438224;Right=chr22:16440580-16440778
chr22	CG	SV	16440580	16440778	11	+	.	ID=1398;Type=deletion;Left=chr22:16437874-16438224;Right=chr22:16440580-16440778
chr22	CG	SV	17951619	17953312	14	.	.	ID=1394;Type=deletion;Left=chr22:17951619-17952112+;Right=chr22:17953102-17953312+;Distance=1483;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L1MA4A:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr22	CG	SV	17951619	17952112	14	+	.	ID=1394;Type=deletion;Left=chr22:17951619-17952112;Right=chr22:17953102-17953312
chr22	CG	SV	17953102	17953312	14	+	.	ID=1394;Type=deletion;Left=chr22:17951619-17952112;Right=chr22:17953102-17953312
chr22	CG	SV	21032819	21082464	30	.	.	ID=538;Type=tandem-duplication;Left=chr22:21032819-21033128-;Right=chr22:21082211-21082464-;Distance=49336;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr22	CG	SV	21032819	21033128	30	-	.	ID=538;Type=tandem-duplication;Left=chr22:21032819-21033128;Right=chr22:21082211-21082464
chr22	CG	SV	21082211	21082464	30	-	.	ID=538;Type=tandem-duplication;Left=chr22:21032819-21033128;Right=chr22:21082211-21082464
chr22	CG	SV	21808558	21809938	62	.	.	ID=1393;Type=deletion;Left=chr22:21808558-21808935+;Right=chr22:21809689-21809938+;Distance=1131;DiscordantMatePairAlignments=62;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_014433:-;RightGenes=NM_014433:-;XRef=rs66466474 (chr22:21808353-21809484);Frequency=0.41
chr22	CG	SV	21808558	21808935	62	+	.	ID=1393;Type=deletion;Left=chr22:21808558-21808935;Right=chr22:21809689-21809938
chr22	CG	SV	21809689	21809938	62	+	.	ID=1393;Type=deletion;Left=chr22:21808558-21808935;Right=chr22:21809689-21809938
chr22	CG	SV	22525946	22528804	10	.	.	ID=1391;Type=deletion;Left=chr22:22525946-22526446+;Right=chr22:22528517-22528804+;Distance=2571;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67891020 (chr22:22525949-22528520);Frequency=1.00
chr22	CG	SV	22525946	22526446	10	+	.	ID=1391;Type=deletion;Left=chr22:22525946-22526446;Right=chr22:22528517-22528804
chr22	CG	SV	22528517	22528804	10	+	.	ID=1391;Type=deletion;Left=chr22:22525946-22526446;Right=chr22:22528517-22528804
chr22	CG	SV	25498076	25500265	112	.	.	ID=1388;Type=deletion;Left=chr22:25498076-25498531+;Right=chr22:25499802-25500265+;Distance=1726;DiscordantMatePairAlignments=112;LeftRepeat=(TTTTA)n:Simple_repeat:Simple_repeat;Self chain;Tandem TTTTA;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67377017 (chr22:25498066-25499792);Frequency=1.00
chr22	CG	SV	25498076	25498531	112	+	.	ID=1388;Type=deletion;Left=chr22:25498076-25498531;Right=chr22:25499802-25500265
chr22	CG	SV	25499802	25500265	112	+	.	ID=1388;Type=deletion;Left=chr22:25498076-25498531;Right=chr22:25499802-25500265
chr22	CG	SV	29375468	29376585	26	.	.	ID=1385;Type=deletion;Left=chr22:29375468-29375802+;Right=chr22:29376235-29376585+;Distance=767;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr22	CG	SV	29375468	29375802	26	+	.	ID=1385;Type=deletion;Left=chr22:29375468-29375802;Right=chr22:29376235-29376585
chr22	CG	SV	29376235	29376585	26	+	.	ID=1385;Type=deletion;Left=chr22:29375468-29375802;Right=chr22:29376235-29376585
chr22	CG	SV	31625772	31626447	12	.	.	ID=1383;Type=deletion;Left=chr22:31625772-31626209+;Right=chr22:31626090-31626447+;Distance=318;DiscordantMatePairAlignments=12;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MIR3:SINE:MIR;LeftGenes=NM_001135774:-;NM_003490:-;NM_133633:-;RightGenes=NM_001135774:-;NM_003490:-;NM_133633:-;XRef=rs6147595 (chr22:31625758-31626076);Frequency=1.00
chr22	CG	SV	31625772	31626209	12	+	.	ID=1383;Type=deletion;Left=chr22:31625772-31626209;Right=chr22:31626090-31626447
chr22	CG	SV	31626090	31626447	12	+	.	ID=1383;Type=deletion;Left=chr22:31625772-31626209;Right=chr22:31626090-31626447
chr22	CG	SV	33789001	33789780	29	.	.	ID=1382;Type=deletion;Left=chr22:33789001-33789418+;Right=chr22:33789421-33789780+;Distance=420;DiscordantMatePairAlignments=29;LeftRepeat=MSTA:LTR:MaLR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66506111 (chr22:33789010-33789421);Frequency=0.41
chr22	CG	SV	33789001	33789418	29	+	.	ID=1382;Type=deletion;Left=chr22:33789001-33789418;Right=chr22:33789421-33789780
chr22	CG	SV	33789421	33789780	29	+	.	ID=1382;Type=deletion;Left=chr22:33789001-33789418;Right=chr22:33789421-33789780
chr22	CG	SV	35473232	35478200	13	.	.	ID=1380;Type=deletion;Left=chr22:35473232-35473673+;Right=chr22:35477958-35478200+;Distance=4726;DiscordantMatePairAlignments=13;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71819381 (chr22:35473093-35477819);Frequency=1.00
chr22	CG	SV	35473232	35473673	13	+	.	ID=1380;Type=deletion;Left=chr22:35473232-35473673;Right=chr22:35477958-35478200
chr22	CG	SV	35477958	35478200	13	+	.	ID=1380;Type=deletion;Left=chr22:35473232-35473673;Right=chr22:35477958-35478200
chr22	CG	SV	37624054	37628959	15	.	.	ID=1378;Type=deletion;Left=chr22:37624054-37624428+;Right=chr22:37628634-37628959+;Distance=4580;DiscordantMatePairAlignments=15;LeftRepeat=L1MC4a:LINE:L1;Self chain;RightRepeat=LTR38-int:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs66483755 (chr22:37624054-37628634);Frequency=0.35
chr22	CG	SV	37624054	37624428	15	+	.	ID=1378;Type=deletion;Left=chr22:37624054-37624428;Right=chr22:37628634-37628959
chr22	CG	SV	37628634	37628959	15	+	.	ID=1378;Type=deletion;Left=chr22:37624054-37624428;Right=chr22:37628634-37628959
chr22	CG	SV	39124216	39125391	12	.	.	ID=1376;Type=deletion;Left=chr22:39124216-39124648+;Right=chr22:39125235-39125391+;Distance=1019;DiscordantMatePairAlignments=12;LeftRepeat=L2:LINE:L2;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_015705:+;RightGenes=NM_015705:+;XRef=;Frequency=0.47
chr22	CG	SV	39124216	39124648	12	+	.	ID=1376;Type=deletion;Left=chr22:39124216-39124648;Right=chr22:39125235-39125391
chr22	CG	SV	39125235	39125391	12	+	.	ID=1376;Type=deletion;Left=chr22:39124216-39124648;Right=chr22:39125235-39125391
chr22	CG	SV	41431507	41432464	14	.	.	ID=1374;Type=deletion;Left=chr22:41431507-41431908+;Right=chr22:41432259-41432464+;Distance=752;DiscordantMatePairAlignments=14;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_017436:-;RightGenes=NM_017436:-;XRef=;Frequency=0.76
chr22	CG	SV	41431507	41431908	14	+	.	ID=1374;Type=deletion;Left=chr22:41431507-41431908;Right=chr22:41432259-41432464
chr22	CG	SV	41432259	41432464	14	+	.	ID=1374;Type=deletion;Left=chr22:41431507-41431908;Right=chr22:41432259-41432464
chr22	CG	SV	42006842	42007840	40	.	.	ID=1372;Type=deletion;Left=chr22:42006842-42007223+;Right=chr22:42007592-42007840+;Distance=750;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;Tandem period 121;Tandem period 47;RightRepeat=C-rich:Low_complexity:Low_complexity;Self chain;LeftGenes=NM_173050:-;RightGenes=NM_173050:-;XRef=;Frequency=0.59
chr22	CG	SV	42006842	42007223	40	+	.	ID=1372;Type=deletion;Left=chr22:42006842-42007223;Right=chr22:42007592-42007840
chr22	CG	SV	42007592	42007840	40	+	.	ID=1372;Type=deletion;Left=chr22:42006842-42007223;Right=chr22:42007592-42007840
chr22	CG	SV	43631107	43632021	40	.	.	ID=1371;Type=deletion;Left=chr22:43631107-43631555+;Right=chr22:43631773-43632021+;Distance=666;DiscordantMatePairAlignments=40;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSp:SINE:Alu;LeftGenes=NM_001017526:+;NM_181334:+;NM_181335:+;RightGenes=NM_001017526:+;NM_181334:+;NM_181335:+;XRef=rs72110256 (chr22:43631077-43631743);Frequency=0.29
chr22	CG	SV	43631107	43631555	40	+	.	ID=1371;Type=deletion;Left=chr22:43631107-43631555;Right=chr22:43631773-43632021
chr22	CG	SV	43631773	43632021	40	+	.	ID=1371;Type=deletion;Left=chr22:43631107-43631555;Right=chr22:43631773-43632021
chr22	CG	SV	47023887	47024649	12	.	.	ID=1365;Type=deletion;Left=chr22:47023887-47024273+;Right=chr22:47024205-47024649+;Distance=318;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67189063 (chr22:47023887-47024205);Frequency=0.82
chr22	CG	SV	47023887	47024273	12	+	.	ID=1365;Type=deletion;Left=chr22:47023887-47024273;Right=chr22:47024205-47024649
chr22	CG	SV	47024205	47024649	12	+	.	ID=1365;Type=deletion;Left=chr22:47023887-47024273;Right=chr22:47024205-47024649
chrX	CG	SV	765004	765628	10	.	.	ID=533;Type=tandem-duplication;Left=chrX:765004-765319-;Right=chrX:765490-765628-;Distance=309;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chrX	CG	SV	765004	765319	10	-	.	ID=533;Type=tandem-duplication;Left=chrX:765004-765319;Right=chrX:765490-765628
chrX	CG	SV	765490	765628	10	-	.	ID=533;Type=tandem-duplication;Left=chrX:765004-765319;Right=chrX:765490-765628
chrX	CG	SV	819562	820208	17	.	.	ID=1360;Type=deletion;Left=chrX:819562-819993+;Right=chrX:819979-820208+;Distance=417;DiscordantMatePairAlignments=17;LeftRepeat=CT-rich:Low_complexity:Low_complexity;Self chain;Tandem TC;Tandem period 124;RightRepeat=CT-rich:Low_complexity:Low_complexity;Self chain;Tandem TC;Tandem period 124;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chrX	CG	SV	819562	819993	17	+	.	ID=1360;Type=deletion;Left=chrX:819562-819993;Right=chrX:819979-820208
chrX	CG	SV	819979	820208	17	+	.	ID=1360;Type=deletion;Left=chrX:819562-819993;Right=chrX:819979-820208
chrX	CG	SV	1158354	1158865	43	.	.	ID=532;Type=tandem-duplication;Left=chrX:1158354-1158621-;Right=chrX:1158650-1158865-;Distance=244;DiscordantMatePairAlignments=43;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chrX	CG	SV	1158354	1158621	43	-	.	ID=532;Type=tandem-duplication;Left=chrX:1158354-1158621;Right=chrX:1158650-1158865
chrX	CG	SV	1158650	1158865	43	-	.	ID=532;Type=tandem-duplication;Left=chrX:1158354-1158621;Right=chrX:1158650-1158865
chrX	CG	SV	1176109	1176732	41	.	.	ID=1359;Type=deletion;Left=chrX:1176109-1176502+;Right=chrX:1176523-1176732+;Distance=414;DiscordantMatePairAlignments=41;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem period 138;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chrX	CG	SV	1176109	1176502	41	+	.	ID=1359;Type=deletion;Left=chrX:1176109-1176502;Right=chrX:1176523-1176732
chrX	CG	SV	1176523	1176732	41	+	.	ID=1359;Type=deletion;Left=chrX:1176109-1176502;Right=chrX:1176523-1176732
chrX	CG	SV	1363446	1367653	10	.	.	ID=25;Type=probable-inversion;Left=chrX:1363446-1363593-;Right=chrX:1367356-1367653+;Distance=3763;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;SegDup;Self chain;Tandem period 225;RightRepeat=SegDup;Self chain;LeftGenes=NM_001161529:+;NM_001161530:+;NM_001161531:+;NM_001161532:+;NM_006140:+;NM_172245:+;NM_172246:+;NM_172247:+;NM_172249:+;NR_027760:+;RightGenes=NM_001161529:+;NM_001161530:+;NM_001161531:+;NM_001161532:+;NM_006140:+;NM_172245:+;NM_172246:+;NM_172247:+;NM_172249:+;NR_027760:+;XRef=;Frequency=0.12
chrX	CG	SV	1363446	1363593	10	-	.	ID=25;Type=probable-inversion;Left=chrX:1363446-1363593;Right=chrX:1367356-1367653
chrX	CG	SV	1367356	1367653	10	-	.	ID=25;Type=probable-inversion;Left=chrX:1363446-1363593;Right=chrX:1367356-1367653
chrX	CG	SV	1393249	1394007	15	.	.	ID=1358;Type=deletion;Left=chrX:1393249-1393551+;Right=chrX:1393913-1394007+;Distance=664;DiscordantMatePairAlignments=15;LeftRepeat=(CACCC)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem period 19;RightRepeat=SegDup;Self chain;Tandem period 19;LeftGenes=;RightGenes=;XRef=rs72364093 (chrX:1393288-1393744);Frequency=0.71
chrX	CG	SV	1393249	1393551	15	+	.	ID=1358;Type=deletion;Left=chrX:1393249-1393551;Right=chrX:1393913-1394007
chrX	CG	SV	1393913	1394007	15	+	.	ID=1358;Type=deletion;Left=chrX:1393249-1393551;Right=chrX:1393913-1394007
chrX	CG	SV	1487065	1489430	20	.	.	ID=1357;Type=deletion;Left=chrX:1487065-1487345+;Right=chrX:1489270-1489430+;Distance=2205;DiscordantMatePairAlignments=20;LeftRepeat=AluJo:SINE:Alu;SegDup;Self chain;Tandem period 105;RightRepeat=AluJo:SINE:Alu;SegDup;Self chain;Tandem period 105;LeftGenes=NM_004192:-;NR_026710:+;NR_026711:+;RightGenes=NM_004192:-;NR_026710:+;NR_026711:+;XRef=;Frequency=0.47
chrX	CG	SV	1487065	1487345	20	+	.	ID=1357;Type=deletion;Left=chrX:1487065-1487345;Right=chrX:1489270-1489430
chrX	CG	SV	1489270	1489430	20	+	.	ID=1357;Type=deletion;Left=chrX:1487065-1487345;Right=chrX:1489270-1489430
chrX	CG	SV	1682585	1683161	18	.	.	ID=1356;Type=deletion;Left=chrX:1682585-1683048+;Right=chrX:1682964-1683161+;Distance=379;DiscordantMatePairAlignments=18;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=NM_004043:+;RightGenes=NM_004043:+;XRef=rs67460587 (chrX:1682521-1682895);Frequency=0.47
chrX	CG	SV	1682585	1683048	18	+	.	ID=1356;Type=deletion;Left=chrX:1682585-1683048;Right=chrX:1682964-1683161
chrX	CG	SV	1682964	1683161	18	+	.	ID=1356;Type=deletion;Left=chrX:1682585-1683048;Right=chrX:1682964-1683161
chrX	CG	SV	1871107	1872191	122	.	.	ID=1354;Type=deletion;Left=chrX:1871107-1871383+;Right=chrX:1871706-1872191+;Distance=599;DiscordantMatePairAlignments=122;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs72117520 (chrX:1870931-1871530);Frequency=0.41
chrX	CG	SV	1871107	1871383	122	+	.	ID=1354;Type=deletion;Left=chrX:1871107-1871383;Right=chrX:1871706-1872191
chrX	CG	SV	1871706	1872191	122	+	.	ID=1354;Type=deletion;Left=chrX:1871107-1871383;Right=chrX:1871706-1872191
chrX	CG	SV	2302787	2305264	28	.	.	ID=1353;Type=deletion;Left=chrX:2302787-2303273+;Right=chrX:2305044-2305264+;Distance=2257;DiscordantMatePairAlignments=28;LeftRepeat=AluSp:SINE:Alu;SegDup;Self chain;RightRepeat=AluSc:SINE:Alu;SegDup;Self chain;LeftGenes=NM_145177:-;RightGenes=NM_145177:-;XRef=;Frequency=0.18
chrX	CG	SV	2302787	2303273	28	+	.	ID=1353;Type=deletion;Left=chrX:2302787-2303273;Right=chrX:2305044-2305264
chrX	CG	SV	2305044	2305264	28	+	.	ID=1353;Type=deletion;Left=chrX:2302787-2303273;Right=chrX:2305044-2305264
chrX	CG	SV	5065346	5067847	25	.	.	ID=1350;Type=deletion;Left=chrX:5065346-5065707+;Right=chrX:5067502-5067847+;Distance=2156;DiscordantMatePairAlignments=25;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67919263 (chrX:5065343-5067499);Frequency=0.94
chrX	CG	SV	5065346	5065707	25	+	.	ID=1350;Type=deletion;Left=chrX:5065346-5065707;Right=chrX:5067502-5067847
chrX	CG	SV	5067502	5067847	25	+	.	ID=1350;Type=deletion;Left=chrX:5065346-5065707;Right=chrX:5067502-5067847
chrX	CG	SV	5738696	5740796	53	.	.	ID=24;Type=probable-inversion;Left=chrX:5738696-5739124-;Right=chrX:5740611-5740796+;Distance=1487;DiscordantMatePairAlignments=53;LeftRepeat=Self chain;RightRepeat=Self chain;THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	5738696	5739124	53	-	.	ID=24;Type=probable-inversion;Left=chrX:5738696-5739124;Right=chrX:5740611-5740796
chrX	CG	SV	5740611	5740796	53	-	.	ID=24;Type=probable-inversion;Left=chrX:5738696-5739124;Right=chrX:5740611-5740796
chrX	CG	SV	11863117	11869756	104	.	.	ID=1347;Type=deletion;Left=chrX:11863117-11863524+;Right=chrX:11869367-11869756+;Distance=6250;DiscordantMatePairAlignments=104;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67857742 (chrX:11863120-11869370);Frequency=0.47
chrX	CG	SV	11863117	11863524	104	+	.	ID=1347;Type=deletion;Left=chrX:11863117-11863524;Right=chrX:11869367-11869756
chrX	CG	SV	11869367	11869756	104	+	.	ID=1347;Type=deletion;Left=chrX:11863117-11863524;Right=chrX:11869367-11869756
chrX	CG	SV	12388664	13756989	27	.	.	ID=1346;Type=deletion;Left=chrX:12388664-12389002+;Right=chrX:13756544-13756989+;Distance=1367880;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;RightRepeat=MSTC:LTR:MaLR;Self chain;LeftGenes=NM_014728:+;RightGenes=NM_001001994:-;XRef=;Frequency=0.00
chrX	CG	SV	12388664	12389002	27	+	.	ID=1346;Type=deletion;Left=chrX:12388664-12389002;Right=chrX:13756544-13756989
chrX	CG	SV	13756544	13756989	27	+	.	ID=1346;Type=deletion;Left=chrX:12388664-12389002;Right=chrX:13756544-13756989
chrX	CG	SV	16337608	16338276	25	.	.	ID=1345;Type=deletion;Left=chrX:16337608-16338010+;Right=chrX:16338141-16338276+;Distance=533;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	16337608	16338010	25	+	.	ID=1345;Type=deletion;Left=chrX:16337608-16338010;Right=chrX:16338141-16338276
chrX	CG	SV	16338141	16338276	25	+	.	ID=1345;Type=deletion;Left=chrX:16337608-16338010;Right=chrX:16338141-16338276
chrX	CG	SV	17430551	17431345	32	.	.	ID=1341;Type=deletion;Left=chrX:17430551-17430955+;Right=chrX:17430866-17431345+;Distance=315;DiscordantMatePairAlignments=32;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_198270:+;RightGenes=NM_198270:+;XRef=rs66968754 (chrX:17430537-17430852);Frequency=0.88
chrX	CG	SV	17430551	17430955	32	+	.	ID=1341;Type=deletion;Left=chrX:17430551-17430955;Right=chrX:17430866-17431345
chrX	CG	SV	17430866	17431345	32	+	.	ID=1341;Type=deletion;Left=chrX:17430551-17430955;Right=chrX:17430866-17431345
chrX	CG	SV	22582499	22583257	13	.	.	ID=1340;Type=deletion;Left=chrX:22582499-22582984+;Right=chrX:22582814-22583257+;Distance=315;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=MER5A:DNA:MER1_type;Self chain;LeftGenes=;RightGenes=;XRef=rs72481279 (chrX:22582485-22582800);Frequency=0.53
chrX	CG	SV	22582499	22582984	13	+	.	ID=1340;Type=deletion;Left=chrX:22582499-22582984;Right=chrX:22582814-22583257
chrX	CG	SV	22582814	22583257	13	+	.	ID=1340;Type=deletion;Left=chrX:22582499-22582984;Right=chrX:22582814-22583257
chrX	CG	SV	29178904	29180493	17	.	.	ID=22;Type=probable-inversion;Left=chrX:29178904-29179069-;Right=chrX:29180119-29180493+;Distance=1050;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=L1PA3:LINE:L1;Self chain;LeftGenes=NM_014271:+;RightGenes=NM_014271:+;XRef=;Frequency=0.59
chrX	CG	SV	29178904	29179069	17	-	.	ID=22;Type=probable-inversion;Left=chrX:29178904-29179069;Right=chrX:29180119-29180493
chrX	CG	SV	29180119	29180493	17	-	.	ID=22;Type=probable-inversion;Left=chrX:29178904-29179069;Right=chrX:29180119-29180493
chrX	CG	SV	40390130	40390652	27	.	.	ID=1337;Type=deletion;Left=chrX:40390130-40390667+;Right=chrX:40390454-40390652+;Distance=324;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_144970:-;RightGenes=NM_144970:-;XRef=;Frequency=1.00
chrX	CG	SV	40390130	40390667	27	+	.	ID=1337;Type=deletion;Left=chrX:40390130-40390667;Right=chrX:40390454-40390652
chrX	CG	SV	40390454	40390652	27	+	.	ID=1337;Type=deletion;Left=chrX:40390130-40390667;Right=chrX:40390454-40390652
chrX	CG	SV	52903115	55695675	14	.	.	ID=527;Type=tandem-duplication;Left=chrX:52903115-52903445-;Right=chrX:55695258-55695675-;Distance=2792230;DiscordantMatePairAlignments=14;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	52903115	52903445	14	-	.	ID=527;Type=tandem-duplication;Left=chrX:52903115-52903445;Right=chrX:55695258-55695675
chrX	CG	SV	55695258	55695675	14	-	.	ID=527;Type=tandem-duplication;Left=chrX:52903115-52903445;Right=chrX:55695258-55695675
chrX	CG	SV	52904508	52907088	25	.	.	ID=1333;Type=deletion;Left=chrX:52904508-52904863+;Right=chrX:52906779-52907088+;Distance=2271;DiscordantMatePairAlignments=25;LeftRepeat=L1PA3:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	52904508	52904863	25	+	.	ID=1333;Type=deletion;Left=chrX:52904508-52904863;Right=chrX:52906779-52907088
chrX	CG	SV	52906779	52907088	25	+	.	ID=1333;Type=deletion;Left=chrX:52904508-52904863;Right=chrX:52906779-52907088
chrX	CG	SV	55189472	55202389	71	.	.	ID=1330;Type=deletion;Left=chrX:55189472-55189846+;Right=chrX:55202293-55202389+;Distance=12821;DiscordantMatePairAlignments=71;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001166699:-;NM_001166700:-;NM_001166701:-;NM_001166702:-;NM_001166703:-;NM_001166704:-;NM_138362:-;NR_030722:-;RightGenes=NM_001166699:-;NM_001166700:-;NM_001166701:-;NM_001166702:-;NM_001166703:-;NM_001166704:-;NM_138362:-;NR_030722:-;XRef=;Frequency=1.00
chrX	CG	SV	55189472	55189846	71	+	.	ID=1330;Type=deletion;Left=chrX:55189472-55189846;Right=chrX:55202293-55202389
chrX	CG	SV	55202293	55202389	71	+	.	ID=1330;Type=deletion;Left=chrX:55189472-55189846;Right=chrX:55202293-55202389
chrX	CG	SV	77008281	77011003	12	.	.	ID=1328;Type=deletion;Left=chrX:77008281-77008674+;Right=chrX:77010767-77011003+;Distance=2486;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=NM_032121:-;RightGenes=NM_032121:-;XRef=rs72063817 (chrX:77008123-77010604);Frequency=0.94
chrX	CG	SV	77008281	77008674	12	+	.	ID=1328;Type=deletion;Left=chrX:77008281-77008674;Right=chrX:77010767-77011003
chrX	CG	SV	77010767	77011003	12	+	.	ID=1328;Type=deletion;Left=chrX:77008281-77008674;Right=chrX:77010767-77011003
chrX	CG	SV	77583513	77584571	92	.	.	ID=1327;Type=deletion;Left=chrX:77583513-77583939+;Right=chrX:77584111-77584571+;Distance=598;DiscordantMatePairAlignments=92;LeftRepeat=Self chain;RightRepeat=HUERS-P1:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	77583513	77583939	92	+	.	ID=1327;Type=deletion;Left=chrX:77583513-77583939;Right=chrX:77584111-77584571
chrX	CG	SV	77584111	77584571	92	+	.	ID=1327;Type=deletion;Left=chrX:77583513-77583939;Right=chrX:77584111-77584571
chrX	CG	SV	78833104	78835811	14	.	.	ID=1325;Type=deletion;Left=chrX:78833104-78833379+;Right=chrX:78835492-78835811+;Distance=2388;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=L1PA7:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs67757067 (chrX:78833104-78835491);Frequency=0.41
chrX	CG	SV	78833104	78833379	14	+	.	ID=1325;Type=deletion;Left=chrX:78833104-78833379;Right=chrX:78835492-78835811
chrX	CG	SV	78835492	78835811	14	+	.	ID=1325;Type=deletion;Left=chrX:78833104-78833379;Right=chrX:78835492-78835811
chrX	CG	SV	80929159	80930054	14	.	.	ID=1324;Type=deletion;Left=chrX:80929159-80929479+;Right=chrX:80929739-80930054+;Distance=580;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;THE1B-int:LTR:MaLR;RightRepeat=Self chain;THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	80929159	80929479	14	+	.	ID=1324;Type=deletion;Left=chrX:80929159-80929479;Right=chrX:80929739-80930054
chrX	CG	SV	80929739	80930054	14	+	.	ID=1324;Type=deletion;Left=chrX:80929159-80929479;Right=chrX:80929739-80930054
chrX	CG	SV	80983309	80989747	36	.	.	ID=1323;Type=deletion;Left=chrX:80983309-80983654+;Right=chrX:80989360-80989747+;Distance=6051;DiscordantMatePairAlignments=36;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=L1MC3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	80983309	80983654	36	+	.	ID=1323;Type=deletion;Left=chrX:80983309-80983654;Right=chrX:80989360-80989747
chrX	CG	SV	80989360	80989747	36	+	.	ID=1323;Type=deletion;Left=chrX:80983309-80983654;Right=chrX:80989360-80989747
chrX	CG	SV	85491834	85496738	28	.	.	ID=1320;Type=deletion;Left=chrX:85491834-85492257+;Right=chrX:85496526-85496738+;Distance=4692;DiscordantMatePairAlignments=28;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=(CAAAA)n:Simple_repeat:Simple_repeat;Self chain;Tandem AATAA;LeftGenes=NM_001139514:+;NM_001139515:+;NM_053281:+;RightGenes=NM_001139514:+;NM_001139515:+;NM_053281:+;XRef=;Frequency=0.88
chrX	CG	SV	85491834	85492257	28	+	.	ID=1320;Type=deletion;Left=chrX:85491834-85492257;Right=chrX:85496526-85496738
chrX	CG	SV	85496526	85496738	28	+	.	ID=1320;Type=deletion;Left=chrX:85491834-85492257;Right=chrX:85496526-85496738
chrX	CG	SV	86165707	86167089	36	.	.	ID=1319;Type=deletion;Left=chrX:86165707-86166042+;Right=chrX:86166792-86167089+;Distance=1085;DiscordantMatePairAlignments=36;LeftRepeat=L1P4:LINE:L1;Self chain;RightRepeat=(TA)n:Simple_repeat:Simple_repeat;Self chain;Tandem TA;Tandem period 11;Tandem period 9;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chrX	CG	SV	86165707	86166042	36	+	.	ID=1319;Type=deletion;Left=chrX:86165707-86166042;Right=chrX:86166792-86167089
chrX	CG	SV	86166792	86167089	36	+	.	ID=1319;Type=deletion;Left=chrX:86165707-86166042;Right=chrX:86166792-86167089
chrX	CG	SV	86173430	86174156	12	.	.	ID=1318;Type=deletion;Left=chrX:86173430-86173802+;Right=chrX:86173883-86174156+;Distance=453;DiscordantMatePairAlignments=12;LeftRepeat=L1PA15:LINE:L1;Self chain;RightRepeat=L1PA15:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71894066 (chrX:86173430-86173880);Frequency=0.71
chrX	CG	SV	86173430	86173802	12	+	.	ID=1318;Type=deletion;Left=chrX:86173430-86173802;Right=chrX:86173883-86174156
chrX	CG	SV	86173883	86174156	12	+	.	ID=1318;Type=deletion;Left=chrX:86173430-86173802;Right=chrX:86173883-86174156
chrX	CG	SV	89465022	89467492	32	.	.	ID=1317;Type=deletion;Left=chrX:89465022-89465297+;Right=chrX:89467036-89467492+;Distance=2014;DiscordantMatePairAlignments=32;LeftRepeat=MLT-int:LTR:MaLR;SegDup;Self chain;RightRepeat=L1MB3:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chrX	CG	SV	89465022	89465297	32	+	.	ID=1317;Type=deletion;Left=chrX:89465022-89465297;Right=chrX:89467036-89467492
chrX	CG	SV	89467036	89467492	32	+	.	ID=1317;Type=deletion;Left=chrX:89465022-89465297;Right=chrX:89467036-89467492
chrX	CG	SV	90170015	90171155	145	.	.	ID=1316;Type=deletion;Left=chrX:90170015-90170454+;Right=chrX:90170744-90171155+;Distance=729;DiscordantMatePairAlignments=145;LeftRepeat=LTR9B:LTR:ERV1;SegDup;Self chain;RightRepeat=L1MA9:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chrX	CG	SV	90170015	90170454	145	+	.	ID=1316;Type=deletion;Left=chrX:90170015-90170454;Right=chrX:90170744-90171155
chrX	CG	SV	90170744	90171155	145	+	.	ID=1316;Type=deletion;Left=chrX:90170015-90170454;Right=chrX:90170744-90171155
chrX	CG	SV	93233376	93236790	59	.	.	ID=1315;Type=deletion;Left=chrX:93233376-93233741+;Right=chrX:93236393-93236790+;Distance=3017;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	93233376	93233741	59	+	.	ID=1315;Type=deletion;Left=chrX:93233376-93233741;Right=chrX:93236393-93236790
chrX	CG	SV	93236393	93236790	59	+	.	ID=1315;Type=deletion;Left=chrX:93233376-93233741;Right=chrX:93236393-93236790
chrX	CG	SV	94937503	94938486	30	.	.	ID=1314;Type=deletion;Left=chrX:94937503-94937739+;Right=chrX:94938136-94938486+;Distance=633;DiscordantMatePairAlignments=30;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs72179039 (chrX:94937503-94938136);Frequency=0.88
chrX	CG	SV	94937503	94937739	30	+	.	ID=1314;Type=deletion;Left=chrX:94937503-94937739;Right=chrX:94938136-94938486
chrX	CG	SV	94938136	94938486	30	+	.	ID=1314;Type=deletion;Left=chrX:94937503-94937739;Right=chrX:94938136-94938486
chrX	CG	SV	117719016	117720622	14	.	.	ID=1310;Type=deletion;Left=chrX:117719016-117719426+;Right=chrX:117720346-117720622+;Distance=1330;DiscordantMatePairAlignments=14;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	117719016	117719426	14	+	.	ID=1310;Type=deletion;Left=chrX:117719016-117719426;Right=chrX:117720346-117720622
chrX	CG	SV	117720346	117720622	14	+	.	ID=1310;Type=deletion;Left=chrX:117719016-117719426;Right=chrX:117720346-117720622
chrX	CG	SV	117905654	117908189	12	.	.	ID=1309;Type=deletion;Left=chrX:117905654-117906020+;Right=chrX:117907917-117908189+;Distance=2263;DiscordantMatePairAlignments=12;LeftRepeat=HERVP71A:LTR:ERV1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	117905654	117906020	12	+	.	ID=1309;Type=deletion;Left=chrX:117905654-117906020;Right=chrX:117907917-117908189
chrX	CG	SV	117907917	117908189	12	+	.	ID=1309;Type=deletion;Left=chrX:117905654-117906020;Right=chrX:117907917-117908189
chrX	CG	SV	118758267	118761054	10	.	.	ID=1308;Type=deletion;Left=chrX:118758267-118758726+;Right=chrX:118760864-118761054+;Distance=2597;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	118758267	118758726	10	+	.	ID=1308;Type=deletion;Left=chrX:118758267-118758726;Right=chrX:118760864-118761054
chrX	CG	SV	118760864	118761054	10	+	.	ID=1308;Type=deletion;Left=chrX:118758267-118758726;Right=chrX:118760864-118761054
chrX	CG	SV	130833149	130836403	40	.	.	ID=1305;Type=deletion;Left=chrX:130833149-130833567+;Right=chrX:130836311-130836403+;Distance=3162;DiscordantMatePairAlignments=40;LeftRepeat=AluSp:SINE:Alu;Self chain;RightRepeat=MER70-int:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chrX	CG	SV	130833149	130833567	40	+	.	ID=1305;Type=deletion;Left=chrX:130833149-130833567;Right=chrX:130836311-130836403
chrX	CG	SV	130836311	130836403	40	+	.	ID=1305;Type=deletion;Left=chrX:130833149-130833567;Right=chrX:130836311-130836403
chrX	CG	SV	131221256	131221959	20	.	.	ID=3350;Type=distal-duplication;Left=chrX:131221256-131221742+;Right=chrX:131221882-131221959-;Distance=703;DiscordantMatePairAlignments=20;LeftRepeat=MLT1B:LTR:MaLR;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	131221256	131221742	20	+	.	ID=3350;Type=distal-duplication;Left=chrX:131221256-131221742;Right=chrX:131221882-131221959
chrX	CG	SV	131221882	131221959	20	+	.	ID=3350;Type=distal-duplication;Left=chrX:131221256-131221742;Right=chrX:131221882-131221959
chrX	CG	SV	131220968	131221971	22	.	.	ID=11;Type=distal-duplication;Left=chrX:131220968-131221272-;Right=chrX:131221878-131221971+;Distance=606;DiscordantMatePairAlignments=22;LeftRepeat=;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chrX	CG	SV	131220968	131221272	22	-	.	ID=11;Type=distal-duplication;Left=chrX:131220968-131221272;Right=chrX:131221878-131221971
chrX	CG	SV	131221878	131221971	22	-	.	ID=11;Type=distal-duplication;Left=chrX:131220968-131221272;Right=chrX:131221878-131221971
chrX	CG	SV	134985665	134986445	21	.	.	ID=1303;Type=deletion;Left=chrX:134985665-134986094+;Right=chrX:134985996-134986445+;Distance=331;DiscordantMatePairAlignments=21;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs67779071 (chrX:134985665-134985996);Frequency=1.00
chrX	CG	SV	134985665	134986094	21	+	.	ID=1303;Type=deletion;Left=chrX:134985665-134986094;Right=chrX:134985996-134986445
chrX	CG	SV	134985996	134986445	21	+	.	ID=1303;Type=deletion;Left=chrX:134985665-134986094;Right=chrX:134985996-134986445
chrX	CG	SV	138212577	138213329	28	.	.	ID=1301;Type=deletion;Left=chrX:138212577-138212958+;Right=chrX:138212903-138213329+;Distance=326;DiscordantMatePairAlignments=28;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72185599 (chrX:138212577-138212903);Frequency=0.94
chrX	CG	SV	138212577	138212958	28	+	.	ID=1301;Type=deletion;Left=chrX:138212577-138212958;Right=chrX:138212903-138213329
chrX	CG	SV	138212903	138213329	28	+	.	ID=1301;Type=deletion;Left=chrX:138212577-138212958;Right=chrX:138212903-138213329
chrX	CG	SV	138984962	139048574	12	.	.	ID=524;Type=tandem-duplication;Left=chrX:138984962-138985360-;Right=chrX:139048497-139048574-;Distance=63214;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	138984962	138985360	12	-	.	ID=524;Type=tandem-duplication;Left=chrX:138984962-138985360;Right=chrX:139048497-139048574
chrX	CG	SV	139048497	139048574	12	-	.	ID=524;Type=tandem-duplication;Left=chrX:138984962-138985360;Right=chrX:139048497-139048574
chrX	CG	SV	144229769	144232670	49	.	.	ID=1300;Type=deletion;Left=chrX:144229769-144230192+;Right=chrX:144232200-144232670+;Distance=2431;DiscordantMatePairAlignments=49;LeftRepeat=L1M1:LINE:L1;RightRepeat=MSTA:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	144229769	144230192	49	+	.	ID=1300;Type=deletion;Left=chrX:144229769-144230192;Right=chrX:144232200-144232670
chrX	CG	SV	144232200	144232670	49	+	.	ID=1300;Type=deletion;Left=chrX:144229769-144230192;Right=chrX:144232200-144232670
chrX	CG	SV	147317388	147319216	154	.	.	ID=1297;Type=deletion;Left=chrX:147317388-147317815+;Right=chrX:147318927-147319216+;Distance=1539;DiscordantMatePairAlignments=154;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs68151473 (chrX:147317390-147318927);Frequency=0.82
chrX	CG	SV	147317388	147317815	154	+	.	ID=1297;Type=deletion;Left=chrX:147317388-147317815;Right=chrX:147318927-147319216
chrX	CG	SV	147318927	147319216	154	+	.	ID=1297;Type=deletion;Left=chrX:147317388-147317815;Right=chrX:147318927-147319216
chrX	CG	SV	154139109	154140572	76	.	.	ID=1295;Type=deletion;Left=chrX:154139109-154139523+;Right=chrX:154140140-154140572+;Distance=1031;DiscordantMatePairAlignments=76;LeftRepeat=;RightRepeat=CT-rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	154139109	154139523	76	+	.	ID=1295;Type=deletion;Left=chrX:154139109-154139523;Right=chrX:154140140-154140572
chrX	CG	SV	154140140	154140572	76	+	.	ID=1295;Type=deletion;Left=chrX:154139109-154139523;Right=chrX:154140140-154140572
chrX	CG	SV	154571654	154575251	12	.	.	ID=1294;Type=deletion;Left=chrX:154571654-154571802+;Right=chrX:154574919-154575251+;Distance=3265;DiscordantMatePairAlignments=12;LeftRepeat=L1PA10:LINE:L1;RightRepeat=L1MA4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	154571654	154571802	12	+	.	ID=1294;Type=deletion;Left=chrX:154571654-154571802;Right=chrX:154574919-154575251
chrX	CG	SV	154574919	154575251	12	+	.	ID=1294;Type=deletion;Left=chrX:154571654-154571802;Right=chrX:154574919-154575251