chr1	CG	SV	815471	5649523	34	.	.	ID=2195;Type=complex;Left=chr1:815471-815629-;Right=chr1:5649114-5649523-;Distance=4833894;DiscordantMatePairAlignments=34;LeftRepeat=AluS:SINE:Alu;SegDup;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	815471	815629	34	-	.	ID=2195;Type=complex;Left=chr1:815471-815629;Right=chr1:5649114-5649523
chr1	CG	SV	5649114	5649523	34	-	.	ID=2195;Type=complex;Left=chr1:815471-815629;Right=chr1:5649114-5649523
chr1	CG	SV	816163	5650678	21	.	.	ID=5923;Type=complex;Left=chr1:816163-816614+;Right=chr1:5650075-5650678+;Distance=4833912;DiscordantMatePairAlignments=21;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	816163	816614	21	+	.	ID=5923;Type=complex;Left=chr1:816163-816614;Right=chr1:5650075-5650678
chr1	CG	SV	5650075	5650678	21	+	.	ID=5923;Type=complex;Left=chr1:816163-816614;Right=chr1:5650075-5650678
chr1	CG	SV	816176	5651354	75	.	.	ID=5922;Type=complex;Left=chr1:816176-816617+;Right=chr1:5650844-5651354+;Distance=4834668;DiscordantMatePairAlignments=75;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 100;Tandem period 34;Tandem period 66;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	816176	816617	75	+	.	ID=5922;Type=complex;Left=chr1:816176-816617;Right=chr1:5650844-5651354
chr1	CG	SV	5650844	5651354	75	+	.	ID=5922;Type=complex;Left=chr1:816176-816617;Right=chr1:5650844-5651354
chr1	CG	SV	859362	860456	14	.	.	ID=5930;Type=deletion;Left=chr1:859362-859735+;Right=chr1:860202-860456+;Distance=840;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 28;RightRepeat=Self chain;Tandem period 28;LeftGenes=NM_152486:+;RightGenes=NM_152486:+;XRef=rs70949527 (chr1:859334-860175);Frequency=1.00
chr1	CG	SV	859362	859735	14	+	.	ID=5930;Type=deletion;Left=chr1:859362-859735;Right=chr1:860202-860456
chr1	CG	SV	860202	860456	14	+	.	ID=5930;Type=deletion;Left=chr1:859362-859735;Right=chr1:860202-860456
chr1	CG	SV	953840	954856	104	.	.	ID=5929;Type=deletion;Left=chr1:953840-954655+;Right=chr1:954388-954856+;Distance=548;DiscordantMatePairAlignments=104;LeftRepeat=Self chain;Tandem period 61;RightRepeat=Self chain;LeftGenes=NM_198576:+;RightGenes=NM_198576:+;XRef=;Frequency=0.29
chr1	CG	SV	953840	954655	104	+	.	ID=5929;Type=deletion;Left=chr1:953840-954655;Right=chr1:954388-954856
chr1	CG	SV	954388	954856	104	+	.	ID=5929;Type=deletion;Left=chr1:953840-954655;Right=chr1:954388-954856
chr1	CG	SV	1604411	1604991	23	+	.	ID=5869;Type=interchromosomal;Left=chr1:1604411-1604991+;Right=chr2:1145894-1146228+;Distance=;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001110781:-;NM_033486:-;NM_033487:-;NM_033488:-;NM_033489:-;NM_033492:-;NM_033493:-;RightGenes=NM_018968:+;XRef=;Frequency=0.00
chr2	CG	SV	1145894	1146228	23	+	.	ID=5869;Type=interchromosomal;Left=chr1:1604411-1604991+;Right=chr2:1145894-1146228+;Distance=;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001110781:-;NM_033486:-;NM_033487:-;NM_033488:-;NM_033489:-;NM_033492:-;NM_033493:-;RightGenes=NM_018968:+;XRef=;Frequency=0.00
chr1	CG	SV	2908894	2909922	13	.	.	ID=5921;Type=deletion;Left=chr1:2908894-2909638+;Right=chr1:2909229-2909922+;Distance=335;DiscordantMatePairAlignments=13;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	2908894	2909638	13	+	.	ID=5921;Type=deletion;Left=chr1:2908894-2909638;Right=chr1:2909229-2909922
chr1	CG	SV	2909229	2909922	13	+	.	ID=5921;Type=deletion;Left=chr1:2908894-2909638;Right=chr1:2909229-2909922
chr1	CG	SV	3550116	3551139	21	.	.	ID=5919;Type=deletion;Left=chr1:3550116-3550558+;Right=chr1:3550830-3551139+;Distance=714;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;Tandem period 51;LeftGenes=NM_017818:-;RightGenes=NM_017818:-;XRef=;Frequency=0.18
chr1	CG	SV	3550116	3550558	21	+	.	ID=5919;Type=deletion;Left=chr1:3550116-3550558;Right=chr1:3550830-3551139
chr1	CG	SV	3550830	3551139	21	+	.	ID=5919;Type=deletion;Left=chr1:3550116-3550558;Right=chr1:3550830-3551139
chr1	CG	SV	5639887	5648787	29	.	.	ID=5918;Type=deletion;Left=chr1:5639887-5640149+;Right=chr1:5648482-5648787+;Distance=8595;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr1	CG	SV	5639887	5640149	29	+	.	ID=5918;Type=deletion;Left=chr1:5639887-5640149;Right=chr1:5648482-5648787
chr1	CG	SV	5648482	5648787	29	+	.	ID=5918;Type=deletion;Left=chr1:5639887-5640149;Right=chr1:5648482-5648787
chr1	CG	SV	5650398	5651363	110	.	.	ID=5917;Type=complex;Left=chr1:5650398-5651017+;Right=chr1:5650902-5651363+;Distance=504;DiscordantMatePairAlignments=110;LeftRepeat=Self chain;Tandem period 100;Tandem period 34;Tandem period 66;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	5650398	5651017	110	+	.	ID=5917;Type=complex;Left=chr1:5650398-5651017;Right=chr1:5650902-5651363
chr1	CG	SV	5650902	5651363	110	+	.	ID=5917;Type=complex;Left=chr1:5650398-5651017;Right=chr1:5650902-5651363
chr1	CG	SV	5656522	5657899	29	.	.	ID=5916;Type=deletion;Left=chr1:5656522-5656622+;Right=chr1:5657546-5657899+;Distance=1024;DiscordantMatePairAlignments=29;LeftRepeat=L1MEc:LINE:L1;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr1	CG	SV	5656522	5656622	29	+	.	ID=5916;Type=deletion;Left=chr1:5656522-5656622;Right=chr1:5657546-5657899
chr1	CG	SV	5657546	5657899	29	+	.	ID=5916;Type=deletion;Left=chr1:5656522-5656622;Right=chr1:5657546-5657899
chr1	CG	SV	5658843	225827459	12	.	.	ID=6218;Type=probable-inversion;Left=chr1:5658843-5659300+;Right=chr1:225827108-225827459-;Distance=220168616;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_178549:+;XRef=;Frequency=0.59
chr1	CG	SV	5658843	5659300	12	+	.	ID=6218;Type=probable-inversion;Left=chr1:5658843-5659300;Right=chr1:225827108-225827459
chr1	CG	SV	225827108	225827459	12	+	.	ID=6218;Type=probable-inversion;Left=chr1:5658843-5659300;Right=chr1:225827108-225827459
chr1	CG	SV	5943284	5949224	34	.	.	ID=5915;Type=deletion;Left=chr1:5943284-5943856+;Right=chr1:5948663-5949224+;Distance=5379;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;RightRepeat=MER72:LTR:ERV1;Self chain;LeftGenes=NM_015102:-;RightGenes=NM_015102:-;XRef=;Frequency=0.00
chr1	CG	SV	5943284	5943856	34	+	.	ID=5915;Type=deletion;Left=chr1:5943284-5943856;Right=chr1:5948663-5949224
chr1	CG	SV	5948663	5949224	34	+	.	ID=5915;Type=deletion;Left=chr1:5943284-5943856;Right=chr1:5948663-5949224
chr1	CG	SV	10482368	10484480	19	.	.	ID=5913;Type=deletion;Left=chr1:10482368-10482938+;Right=chr1:10484222-10484480+;Distance=1854;DiscordantMatePairAlignments=19;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_004565:+;RightGenes=NM_004565:+;XRef=;Frequency=0.00
chr1	CG	SV	10482368	10482938	19	+	.	ID=5913;Type=deletion;Left=chr1:10482368-10482938;Right=chr1:10484222-10484480
chr1	CG	SV	10484222	10484480	19	+	.	ID=5913;Type=deletion;Left=chr1:10482368-10482938;Right=chr1:10484222-10484480
chr1	CG	SV	16923723	232979474	332	.	.	ID=959;Type=probable-inversion;Left=chr1:16923723-16924242-;Right=chr1:232978602-232979474+;Distance=216054360;DiscordantMatePairAlignments=332;LeftRepeat=SegDup;Self chain;RightRepeat=MIRb:SINE:MIR;Tandem period 16;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	16923723	16924242	332	-	.	ID=959;Type=probable-inversion;Left=chr1:16923723-16924242;Right=chr1:232978602-232979474
chr1	CG	SV	232978602	232979474	332	-	.	ID=959;Type=probable-inversion;Left=chr1:16923723-16924242;Right=chr1:232978602-232979474
chr1	CG	SV	25031290	25034775	50	.	.	ID=5908;Type=deletion;Left=chr1:25031290-25031978+;Right=chr1:25034112-25034775+;Distance=2822;DiscordantMatePairAlignments=50;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=NM_013943:+;RightGenes=NM_013943:+;XRef=rs67502578 (chr1:25031274-25034096);Frequency=1.00
chr1	CG	SV	25031290	25031978	50	+	.	ID=5908;Type=deletion;Left=chr1:25031290-25031978;Right=chr1:25034112-25034775
chr1	CG	SV	25034112	25034775	50	+	.	ID=5908;Type=deletion;Left=chr1:25031290-25031978;Right=chr1:25034112-25034775
chr1	CG	SV	27875709	54313247	45	.	.	ID=1825;Type=probable-inversion;Left=chr1:27875709-27876317-;Right=chr1:54312586-54313247+;Distance=26436269;DiscordantMatePairAlignments=45;LeftRepeat=L1PA8:LINE:L1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=NM_153035:+;XRef=;Frequency=0.00
chr1	CG	SV	27875709	27876317	45	-	.	ID=1825;Type=probable-inversion;Left=chr1:27875709-27876317;Right=chr1:54312586-54313247
chr1	CG	SV	54312586	54313247	45	-	.	ID=1825;Type=probable-inversion;Left=chr1:27875709-27876317;Right=chr1:54312586-54313247
chr1	CG	SV	27879335	35285025	12	.	.	ID=1826;Type=probable-inversion;Left=chr1:27879335-27879627-;Right=chr1:35284504-35285025+;Distance=7404877;DiscordantMatePairAlignments=12;LeftRepeat=MLT-int:LTR:MaLR;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	27879335	27879627	12	-	.	ID=1826;Type=probable-inversion;Left=chr1:27879335-27879627;Right=chr1:35284504-35285025
chr1	CG	SV	35284504	35285025	12	-	.	ID=1826;Type=probable-inversion;Left=chr1:27879335-27879627;Right=chr1:35284504-35285025
chr1	CG	SV	31172065	31173229	69	.	.	ID=5901;Type=deletion;Left=chr1:31172065-31172841+;Right=chr1:31172780-31173229+;Distance=715;DiscordantMatePairAlignments=69;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	31172065	31172841	69	+	.	ID=5901;Type=deletion;Left=chr1:31172065-31172841;Right=chr1:31172780-31173229
chr1	CG	SV	31172780	31173229	69	+	.	ID=5901;Type=deletion;Left=chr1:31172065-31172841;Right=chr1:31172780-31173229
chr1	CG	SV	31743934	31744521	16	.	.	ID=1823;Type=probable-inversion;Left=chr1:31743934-31744128-;Right=chr1:31744235-31744521+;Distance=107;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	31743934	31744128	16	-	.	ID=1823;Type=probable-inversion;Left=chr1:31743934-31744128;Right=chr1:31744235-31744521
chr1	CG	SV	31744235	31744521	16	-	.	ID=1823;Type=probable-inversion;Left=chr1:31743934-31744128;Right=chr1:31744235-31744521
chr1	CG	SV	32965788	32968851	123	.	.	ID=2185;Type=tandem-duplication;Left=chr1:32965788-32966449-;Right=chr1:32968350-32968851-;Distance=2402;DiscordantMatePairAlignments=123;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSp:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	32965788	32966449	123	-	.	ID=2185;Type=tandem-duplication;Left=chr1:32965788-32966449;Right=chr1:32968350-32968851
chr1	CG	SV	32968350	32968851	123	-	.	ID=2185;Type=tandem-duplication;Left=chr1:32965788-32966449;Right=chr1:32968350-32968851
chr1	CG	SV	33927935	33930399	94	.	.	ID=6213;Type=probable-inversion;Left=chr1:33927935-33928493+;Right=chr1:33929807-33930399-;Distance=2464;DiscordantMatePairAlignments=94;LeftRepeat=L1MC4:LINE:L1;RightRepeat=;LeftGenes=NM_052896:-;RightGenes=NM_052896:-;XRef=;Frequency=0.00
chr1	CG	SV	33927935	33928493	94	+	.	ID=6213;Type=probable-inversion;Left=chr1:33927935-33928493;Right=chr1:33929807-33930399
chr1	CG	SV	33929807	33930399	94	+	.	ID=6213;Type=probable-inversion;Left=chr1:33927935-33928493;Right=chr1:33929807-33930399
chr1	CG	SV	43831883	43832474	33	.	.	ID=6212;Type=probable-inversion;Left=chr1:43831883-43832450+;Right=chr1:43832108-43832474-;Distance=591;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_002840:+;NM_130440:+;RightGenes=NM_002840:+;NM_130440:+;XRef=;Frequency=0.94
chr1	CG	SV	43831883	43832450	33	+	.	ID=6212;Type=probable-inversion;Left=chr1:43831883-43832450;Right=chr1:43832108-43832474
chr1	CG	SV	43832108	43832474	33	+	.	ID=6212;Type=probable-inversion;Left=chr1:43831883-43832450;Right=chr1:43832108-43832474
chr1	CG	SV	55124018	55126800	154	.	.	ID=5884;Type=deletion;Left=chr1:55124018-55124681+;Right=chr1:55126193-55126800+;Distance=2175;DiscordantMatePairAlignments=154;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;LeftGenes=NM_014762:-;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	55124018	55124681	154	+	.	ID=5884;Type=deletion;Left=chr1:55124018-55124681;Right=chr1:55126193-55126800
chr1	CG	SV	55126193	55126800	154	+	.	ID=5884;Type=deletion;Left=chr1:55124018-55124681;Right=chr1:55126193-55126800
chr1	CG	SV	56173870	56174855	16	.	.	ID=5881;Type=deletion;Left=chr1:56173870-56174335+;Right=chr1:56174191-56174855+;Distance=321;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=AluYa5:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	56173870	56174335	16	+	.	ID=5881;Type=deletion;Left=chr1:56173870-56174335;Right=chr1:56174191-56174855
chr1	CG	SV	56174191	56174855	16	+	.	ID=5881;Type=deletion;Left=chr1:56173870-56174335;Right=chr1:56174191-56174855
chr1	CG	SV	56603700	56608152	276	.	.	ID=5880;Type=deletion;Left=chr1:56603700-56604400+;Right=chr1:56607555-56608152+;Distance=3855;DiscordantMatePairAlignments=276;LeftRepeat=L1MC4a:LINE:L1;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr1	CG	SV	56603700	56604400	276	+	.	ID=5880;Type=deletion;Left=chr1:56603700-56604400;Right=chr1:56607555-56608152
chr1	CG	SV	56607555	56608152	276	+	.	ID=5880;Type=deletion;Left=chr1:56603700-56604400;Right=chr1:56607555-56608152
chr1	CG	SV	56768304	56768934	31	.	.	ID=2182;Type=tandem-duplication;Left=chr1:56768304-56768620-;Right=chr1:56768587-56768934-;Distance=314;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=;LeftGenes=NM_003713:-;NM_177414:-;RightGenes=NM_003713:-;NM_177414:-;XRef=;Frequency=0.71
chr1	CG	SV	56768304	56768620	31	-	.	ID=2182;Type=tandem-duplication;Left=chr1:56768304-56768620;Right=chr1:56768587-56768934
chr1	CG	SV	56768587	56768934	31	-	.	ID=2182;Type=tandem-duplication;Left=chr1:56768304-56768620;Right=chr1:56768587-56768934
chr1	CG	SV	57015213	57016170	10	.	.	ID=5878;Type=deletion;Left=chr1:57015213-57015787+;Right=chr1:57015552-57016170+;Distance=339;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=MIRb:SINE:MIR;LeftGenes=NM_001004303:-;RightGenes=NM_001004303:-;XRef=rs34032387 (chr1:57015213-57015552);Frequency=1.00
chr1	CG	SV	57015213	57015787	10	+	.	ID=5878;Type=deletion;Left=chr1:57015213-57015787;Right=chr1:57015552-57016170
chr1	CG	SV	57015552	57016170	10	+	.	ID=5878;Type=deletion;Left=chr1:57015213-57015787;Right=chr1:57015552-57016170
chr1	CG	SV	58516501	58518144	388	.	.	ID=5874;Type=deletion;Left=chr1:58516501-58517208+;Right=chr1:58517414-58518144+;Distance=913;DiscordantMatePairAlignments=388;LeftRepeat=THE1D:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67857551 (chr1:58516497-58517410);Frequency=1.00
chr1	CG	SV	58516501	58517208	388	+	.	ID=5874;Type=deletion;Left=chr1:58516501-58517208;Right=chr1:58517414-58518144
chr1	CG	SV	58517414	58518144	388	+	.	ID=5874;Type=deletion;Left=chr1:58516501-58517208;Right=chr1:58517414-58518144
chr1	CG	SV	62163190	62164147	14	.	.	ID=5867;Type=deletion;Left=chr1:62163190-62163697+;Right=chr1:62163539-62164147+;Distance=349;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_176877:+;RightGenes=NM_176877:+;XRef=rs6143236 (chr1:62163174-62163523);Frequency=1.00
chr1	CG	SV	62163190	62163697	14	+	.	ID=5867;Type=deletion;Left=chr1:62163190-62163697;Right=chr1:62163539-62164147
chr1	CG	SV	62163539	62164147	14	+	.	ID=5867;Type=deletion;Left=chr1:62163190-62163697;Right=chr1:62163539-62164147
chr1	CG	SV	63477948	63481340	334	.	.	ID=5864;Type=deletion;Left=chr1:63477948-63478669+;Right=chr1:63480738-63481340+;Distance=2790;DiscordantMatePairAlignments=334;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68164570 (chr1:63477954-63480744);Frequency=0.65
chr1	CG	SV	63477948	63478669	334	+	.	ID=5864;Type=deletion;Left=chr1:63477948-63478669;Right=chr1:63480738-63481340
chr1	CG	SV	63480738	63481340	334	+	.	ID=5864;Type=deletion;Left=chr1:63477948-63478669;Right=chr1:63480738-63481340
chr1	CG	SV	67780611	67782038	125	.	.	ID=5862;Type=deletion;Left=chr1:67780611-67781213+;Right=chr1:67781468-67782038+;Distance=857;DiscordantMatePairAlignments=125;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	67780611	67781213	125	+	.	ID=5862;Type=deletion;Left=chr1:67780611-67781213;Right=chr1:67781468-67782038
chr1	CG	SV	67781468	67782038	125	+	.	ID=5862;Type=deletion;Left=chr1:67780611-67781213;Right=chr1:67781468-67782038
chr1	CG	SV	72528284	72537210	137	.	.	ID=5857;Type=deletion;Left=chr1:72528284-72529060+;Right=chr1:72536666-72537210+;Distance=8382;DiscordantMatePairAlignments=137;LeftRepeat=MLT2D:LTR:ERVL;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	72528284	72529060	137	+	.	ID=5857;Type=deletion;Left=chr1:72528284-72529060;Right=chr1:72536666-72537210
chr1	CG	SV	72536666	72537210	137	+	.	ID=5857;Type=deletion;Left=chr1:72528284-72529060;Right=chr1:72536666-72537210
chr1	CG	SV	72538912	72585025	158	.	.	ID=5856;Type=deletion;Left=chr1:72538912-72539519+;Right=chr1:72584428-72585025+;Distance=45516;DiscordantMatePairAlignments=158;LeftRepeat=;RightRepeat=MLT1E3:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	72538912	72539519	158	+	.	ID=5856;Type=deletion;Left=chr1:72538912-72539519;Right=chr1:72584428-72585025
chr1	CG	SV	72584428	72585025	158	+	.	ID=5856;Type=deletion;Left=chr1:72538912-72539519;Right=chr1:72584428-72585025
chr1	CG	SV	73526195	73527063	10	.	.	ID=5855;Type=deletion;Left=chr1:73526195-73526869+;Right=chr1:73526510-73527063+;Distance=315;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=L1M4b:LINE:L1;LeftGenes=;RightGenes=;XRef=rs70959273 (chr1:73526195-73526510);Frequency=1.00
chr1	CG	SV	73526195	73526869	10	+	.	ID=5855;Type=deletion;Left=chr1:73526195-73526869;Right=chr1:73526510-73527063
chr1	CG	SV	73526510	73527063	10	+	.	ID=5855;Type=deletion;Left=chr1:73526195-73526869;Right=chr1:73526510-73527063
chr1	CG	SV	77248668	77249313	35	.	.	ID=2178;Type=tandem-duplication;Left=chr1:77248668-77248983-;Right=chr1:77248993-77249313-;Distance=330;DiscordantMatePairAlignments=35;LeftRepeat=;RightRepeat=;LeftGenes=NM_030965:+;RightGenes=NM_030965:+;XRef=;Frequency=0.18
chr1	CG	SV	77248668	77248983	35	-	.	ID=2178;Type=tandem-duplication;Left=chr1:77248668-77248983;Right=chr1:77248993-77249313
chr1	CG	SV	77248993	77249313	35	-	.	ID=2178;Type=tandem-duplication;Left=chr1:77248668-77248983;Right=chr1:77248993-77249313
chr1	CG	SV	78811603	78812202	67	+	.	ID=6188;Type=interchromosomal;Left=chr1:78811603-78812202+;Right=chr4:20149198-20149767-;Distance=;DiscordantMatePairAlignments=67;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_004787:+;XRef=;Frequency=0.00
chr4	CG	SV	20149198	20149767	67	+	.	ID=6188;Type=interchromosomal;Left=chr1:78811603-78812202+;Right=chr4:20149198-20149767-;Distance=;DiscordantMatePairAlignments=67;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_004787:+;XRef=;Frequency=0.00
chr1	CG	SV	80567002	80568178	49	.	.	ID=1810;Type=probable-inversion;Left=chr1:80567002-80567211-;Right=chr1:80567697-80568178+;Distance=486;DiscordantMatePairAlignments=49;LeftRepeat=L1MC:LINE:L1;RightRepeat=(TA)n:Simple_repeat:Simple_repeat;Tandem AC;Tandem TA;Tandem period 22;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	80567002	80567211	49	-	.	ID=1810;Type=probable-inversion;Left=chr1:80567002-80567211;Right=chr1:80567697-80568178
chr1	CG	SV	80567697	80568178	49	-	.	ID=1810;Type=probable-inversion;Left=chr1:80567002-80567211;Right=chr1:80567697-80568178
chr1	CG	SV	81177347	81184078	107	.	.	ID=5849;Type=deletion;Left=chr1:81177347-81177880+;Right=chr1:81183538-81184078+;Distance=6191;DiscordantMatePairAlignments=107;LeftRepeat=MSTD:LTR:MaLR;RightRepeat=MSTD:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	81177347	81177880	107	+	.	ID=5849;Type=deletion;Left=chr1:81177347-81177880;Right=chr1:81183538-81184078
chr1	CG	SV	81183538	81184078	107	+	.	ID=5849;Type=deletion;Left=chr1:81177347-81177880;Right=chr1:81183538-81184078
chr1	CG	SV	81432939	81434143	50	.	.	ID=6210;Type=probable-inversion;Left=chr1:81432939-81433574+;Right=chr1:81433962-81434143-;Distance=1204;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=L1MD3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr1	CG	SV	81432939	81433574	50	+	.	ID=6210;Type=probable-inversion;Left=chr1:81432939-81433574;Right=chr1:81433962-81434143
chr1	CG	SV	81433962	81434143	50	+	.	ID=6210;Type=probable-inversion;Left=chr1:81432939-81433574;Right=chr1:81433962-81434143
chr1	CG	SV	82898564	82900752	249	.	.	ID=5847;Type=deletion;Left=chr1:82898564-82899147+;Right=chr1:82900175-82900752+;Distance=1611;DiscordantMatePairAlignments=249;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70959281 (chr1:82898546-82900157);Frequency=1.00
chr1	CG	SV	82898564	82899147	249	+	.	ID=5847;Type=deletion;Left=chr1:82898564-82899147;Right=chr1:82900175-82900752
chr1	CG	SV	82900175	82900752	249	+	.	ID=5847;Type=deletion;Left=chr1:82898564-82899147;Right=chr1:82900175-82900752
chr1	CG	SV	84290515	84297814	105	.	.	ID=5846;Type=deletion;Left=chr1:84290515-84291181+;Right=chr1:84297219-84297814+;Distance=6704;DiscordantMatePairAlignments=105;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66528373 (chr1:84290513-84297217);Frequency=1.00
chr1	CG	SV	84290515	84291181	105	+	.	ID=5846;Type=deletion;Left=chr1:84290515-84291181;Right=chr1:84297219-84297814
chr1	CG	SV	84297219	84297814	105	+	.	ID=5846;Type=deletion;Left=chr1:84290515-84291181;Right=chr1:84297219-84297814
chr1	CG	SV	85521222	85522281	20	.	.	ID=5844;Type=deletion;Left=chr1:85521222-85521854+;Right=chr1:85521552-85522281+;Distance=330;DiscordantMatePairAlignments=20;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66759539 (chr1:85521222-85521552);Frequency=0.94
chr1	CG	SV	85521222	85521854	20	+	.	ID=5844;Type=deletion;Left=chr1:85521222-85521854;Right=chr1:85521552-85522281
chr1	CG	SV	85521552	85522281	20	+	.	ID=5844;Type=deletion;Left=chr1:85521222-85521854;Right=chr1:85521552-85522281
chr1	CG	SV	86173439	86177725	215	.	.	ID=5843;Type=deletion;Left=chr1:86173439-86174132+;Right=chr1:86177126-86177725+;Distance=3687;DiscordantMatePairAlignments=215;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=LTR16A:LTR:ERVL;Self chain;LeftGenes=NM_152890:-;RightGenes=NM_152890:-;XRef=;Frequency=0.12
chr1	CG	SV	86173439	86174132	215	+	.	ID=5843;Type=deletion;Left=chr1:86173439-86174132;Right=chr1:86177126-86177725
chr1	CG	SV	86177126	86177725	215	+	.	ID=5843;Type=deletion;Left=chr1:86173439-86174132;Right=chr1:86177126-86177725
chr1	CG	SV	86513574	86514764	16	.	.	ID=5841;Type=deletion;Left=chr1:86513574-86514019+;Right=chr1:86514291-86514764+;Distance=717;DiscordantMatePairAlignments=16;LeftRepeat=L1HS:LINE:L1;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs70959283 (chr1:86513574-86514291);Frequency=0.82
chr1	CG	SV	86513574	86514019	16	+	.	ID=5841;Type=deletion;Left=chr1:86513574-86514019;Right=chr1:86514291-86514764
chr1	CG	SV	86514291	86514764	16	+	.	ID=5841;Type=deletion;Left=chr1:86513574-86514019;Right=chr1:86514291-86514764
chr1	CG	SV	86888450	86939104	59	.	.	ID=2177;Type=tandem-duplication;Left=chr1:86888450-86888933-;Right=chr1:86938484-86939104-;Distance=50171;DiscordantMatePairAlignments=59;LeftRepeat=Self chain;RightRepeat=L1MA8:LINE:L1;LeftGenes=NR_024604:+;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	86888450	86888933	59	-	.	ID=2177;Type=tandem-duplication;Left=chr1:86888450-86888933;Right=chr1:86938484-86939104
chr1	CG	SV	86938484	86939104	59	-	.	ID=2177;Type=tandem-duplication;Left=chr1:86888450-86888933;Right=chr1:86938484-86939104
chr1	CG	SV	87689068	87689927	38	.	.	ID=2176;Type=tandem-duplication;Left=chr1:87689068-87689469-;Right=chr1:87689467-87689927-;Distance=458;DiscordantMatePairAlignments=38;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr1	CG	SV	87689068	87689469	38	-	.	ID=2176;Type=tandem-duplication;Left=chr1:87689068-87689469;Right=chr1:87689467-87689927
chr1	CG	SV	87689467	87689927	38	-	.	ID=2176;Type=tandem-duplication;Left=chr1:87689068-87689469;Right=chr1:87689467-87689927
chr1	CG	SV	89371762	89425228	12	.	.	ID=5839;Type=deletion;Left=chr1:89371762-89371957+;Right=chr1:89424837-89425228+;Distance=53075;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_207398:-;RightGenes=NM_052941:-;XRef=;Frequency=0.35
chr1	CG	SV	89371762	89371957	12	+	.	ID=5839;Type=deletion;Left=chr1:89371762-89371957;Right=chr1:89424837-89425228
chr1	CG	SV	89424837	89425228	12	+	.	ID=5839;Type=deletion;Left=chr1:89371762-89371957;Right=chr1:89424837-89425228
chr1	CG	SV	91686699	91687826	14	.	.	ID=5831;Type=deletion;Left=chr1:91686699-91687100+;Right=chr1:91687154-91687826+;Distance=455;DiscordantMatePairAlignments=14;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72186914 (chr1:91686699-91687153);Frequency=1.00
chr1	CG	SV	91686699	91687100	14	+	.	ID=5831;Type=deletion;Left=chr1:91686699-91687100;Right=chr1:91687154-91687826
chr1	CG	SV	91687154	91687826	14	+	.	ID=5831;Type=deletion;Left=chr1:91686699-91687100;Right=chr1:91687154-91687826
chr1	CG	SV	93034660	93035515	23	.	.	ID=1807;Type=probable-inversion;Left=chr1:93034660-93034805-;Right=chr1:93035056-93035515+;Distance=251;DiscordantMatePairAlignments=23;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	93034660	93034805	23	-	.	ID=1807;Type=probable-inversion;Left=chr1:93034660-93034805;Right=chr1:93035056-93035515
chr1	CG	SV	93035056	93035515	23	-	.	ID=1807;Type=probable-inversion;Left=chr1:93034660-93034805;Right=chr1:93035056-93035515
chr1	CG	SV	94060963	94064525	259	.	.	ID=5829;Type=deletion;Left=chr1:94060963-94061805+;Right=chr1:94063847-94064525+;Distance=2884;DiscordantMatePairAlignments=259;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68045023 (chr1:94060963-94063847);Frequency=0.82
chr1	CG	SV	94060963	94061805	259	+	.	ID=5829;Type=deletion;Left=chr1:94060963-94061805;Right=chr1:94063847-94064525
chr1	CG	SV	94063847	94064525	259	+	.	ID=5829;Type=deletion;Left=chr1:94060963-94061805;Right=chr1:94063847-94064525
chr1	CG	SV	102868668	102869584	10	.	.	ID=5823;Type=deletion;Left=chr1:102868668-102869325+;Right=chr1:102868987-102869584+;Distance=319;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6143346 (chr1:102868653-102868972);Frequency=1.00
chr1	CG	SV	102868668	102869325	10	+	.	ID=5823;Type=deletion;Left=chr1:102868668-102869325;Right=chr1:102868987-102869584
chr1	CG	SV	102868987	102869584	10	+	.	ID=5823;Type=deletion;Left=chr1:102868668-102869325;Right=chr1:102868987-102869584
chr1	CG	SV	104244722	104245752	59	.	.	ID=5822;Type=deletion;Left=chr1:104244722-104245438+;Right=chr1:104245248-104245752+;Distance=526;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66586618 (chr1:104244722-104245248);Frequency=0.76
chr1	CG	SV	104244722	104245438	59	+	.	ID=5822;Type=deletion;Left=chr1:104244722-104245438;Right=chr1:104245248-104245752
chr1	CG	SV	104245248	104245752	59	+	.	ID=5822;Type=deletion;Left=chr1:104244722-104245438;Right=chr1:104245248-104245752
chr1	CG	SV	109988725	109993508	48	.	.	ID=5817;Type=deletion;Left=chr1:109988725-109989303+;Right=chr1:109992957-109993508+;Distance=4232;DiscordantMatePairAlignments=48;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr1	CG	SV	109988725	109989303	48	+	.	ID=5817;Type=deletion;Left=chr1:109988725-109989303;Right=chr1:109992957-109993508
chr1	CG	SV	109992957	109993508	48	+	.	ID=5817;Type=deletion;Left=chr1:109988725-109989303;Right=chr1:109992957-109993508
chr1	CG	SV	112493315	112506670	106	.	.	ID=5814;Type=deletion;Left=chr1:112493315-112493839+;Right=chr1:112506228-112506670+;Distance=12913;DiscordantMatePairAlignments=106;LeftRepeat=MLT1B-int:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr1	CG	SV	112493315	112493839	106	+	.	ID=5814;Type=deletion;Left=chr1:112493315-112493839;Right=chr1:112506228-112506670
chr1	CG	SV	112506228	112506670	106	+	.	ID=5814;Type=deletion;Left=chr1:112493315-112493839;Right=chr1:112506228-112506670
chr1	CG	SV	113412862	113415946	16	.	.	ID=5813;Type=deletion;Left=chr1:113412862-113413235+;Right=chr1:113415317-113415946+;Distance=2455;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs67241355 (chr1:113412862-113415317);Frequency=0.65
chr1	CG	SV	113412862	113413235	16	+	.	ID=5813;Type=deletion;Left=chr1:113412862-113413235;Right=chr1:113415317-113415946
chr1	CG	SV	113415317	113415946	16	+	.	ID=5813;Type=deletion;Left=chr1:113412862-113413235;Right=chr1:113415317-113415946
chr1	CG	SV	114447553	114455872	31	.	.	ID=6208;Type=probable-inversion;Left=chr1:114447553-114447633+;Right=chr1:114455238-114455872-;Distance=8319;DiscordantMatePairAlignments=31;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_205848:-;RightGenes=NM_205848:-;XRef=;Frequency=0.76
chr1	CG	SV	114447553	114447633	31	+	.	ID=6208;Type=probable-inversion;Left=chr1:114447553-114447633;Right=chr1:114455238-114455872
chr1	CG	SV	114455238	114455872	31	+	.	ID=6208;Type=probable-inversion;Left=chr1:114447553-114447633;Right=chr1:114455238-114455872
chr1	CG	SV	141477096	141479343	19	.	.	ID=5810;Type=deletion;Left=chr1:141477096-141477174+;Right=chr1:141479058-141479343+;Distance=1962;DiscordantMatePairAlignments=19;LeftRepeat=AluJ/FRAM:SINE:Alu;Self chain;RightRepeat=AluJ/FRAM:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	141477096	141477174	19	+	.	ID=5810;Type=deletion;Left=chr1:141477096-141477174;Right=chr1:141479058-141479343
chr1	CG	SV	141479058	141479343	19	+	.	ID=5810;Type=deletion;Left=chr1:141477096-141477174;Right=chr1:141479058-141479343
chr1	CG	SV	141906695	141907447	12	+	.	ID=5097;Type=interchromosomal;Left=chr1:141906695-141907447+;Right=chr2:11847365-11847496+;Distance=;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;RightRepeat=;LeftGenes=;RightGenes=NM_145693:+;XRef=;Frequency=0.00
chr2	CG	SV	11847365	11847496	12	+	.	ID=5097;Type=interchromosomal;Left=chr1:141906695-141907447+;Right=chr2:11847365-11847496+;Distance=;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;RightRepeat=;LeftGenes=;RightGenes=NM_145693:+;XRef=;Frequency=0.00
chr1	CG	SV	143391032	143665970	10	.	.	ID=2164;Type=tandem-duplication;Left=chr1:143391032-143391395-;Right=chr1:143665728-143665970-;Distance=274575;DiscordantMatePairAlignments=10;LeftRepeat=SegDup;Self chain;RightRepeat=L1MC4a:LINE:L1;SegDup;Self chain;LeftGenes=NM_001037675:+;RightGenes=NM_001002810:-;NM_001002812:-;NM_014644:-;NM_022359:-;XRef=;Frequency=0.29
chr1	CG	SV	143391032	143391395	10	-	.	ID=2164;Type=tandem-duplication;Left=chr1:143391032-143391395;Right=chr1:143665728-143665970
chr1	CG	SV	143665728	143665970	10	-	.	ID=2164;Type=tandem-duplication;Left=chr1:143391032-143391395;Right=chr1:143665728-143665970
chr1	CG	SV	143605638	143607139	61	.	.	ID=5806;Type=deletion;Left=chr1:143605638-143606250+;Right=chr1:143606636-143607139+;Distance=998;DiscordantMatePairAlignments=61;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;RightGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;XRef=rs68115952 (chr1:143605449-143606445);Frequency=1.00
chr1	CG	SV	143605638	143606250	61	+	.	ID=5806;Type=deletion;Left=chr1:143605638-143606250;Right=chr1:143606636-143607139
chr1	CG	SV	143606636	143607139	61	+	.	ID=5806;Type=deletion;Left=chr1:143605638-143606250;Right=chr1:143606636-143607139
chr1	CG	SV	143607654	143618492	46	.	.	ID=5804;Type=deletion;Left=chr1:143607654-143608161+;Right=chr1:143618166-143618492+;Distance=10512;DiscordantMatePairAlignments=46;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;RightGenes=NM_001002811:-;NM_001002812:-;NM_014644:-;XRef=;Frequency=1.00
chr1	CG	SV	143607654	143608161	46	+	.	ID=5804;Type=deletion;Left=chr1:143607654-143608161;Right=chr1:143618166-143618492
chr1	CG	SV	143618166	143618492	46	+	.	ID=5804;Type=deletion;Left=chr1:143607654-143608161;Right=chr1:143618166-143618492
chr1	CG	SV	143804305	143809196	791	.	.	ID=5800;Type=deletion;Left=chr1:143804305-143805001+;Right=chr1:143808440-143809196+;Distance=4135;DiscordantMatePairAlignments=791;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_004892:+;XRef=rs67330508 (chr1:143804305-143808439);Frequency=1.00
chr1	CG	SV	143804305	143805001	791	+	.	ID=5800;Type=deletion;Left=chr1:143804305-143805001;Right=chr1:143808440-143809196
chr1	CG	SV	143808440	143809196	791	+	.	ID=5800;Type=deletion;Left=chr1:143804305-143805001;Right=chr1:143808440-143809196
chr1	CG	SV	151482360	151483543	36	.	.	ID=5795;Type=deletion;Left=chr1:151482360-151482680+;Right=chr1:151483081-151483543+;Distance=721;DiscordantMatePairAlignments=36;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGG;Tandem period 94;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGG;Tandem period 94;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr1	CG	SV	151482360	151482680	36	+	.	ID=5795;Type=deletion;Left=chr1:151482360-151482680;Right=chr1:151483081-151483543
chr1	CG	SV	151483081	151483543	36	+	.	ID=5795;Type=deletion;Left=chr1:151482360-151482680;Right=chr1:151483081-151483543
chr1	CG	SV	154110893	154111851	38	.	.	ID=5793;Type=deletion;Left=chr1:154110893-154111542+;Right=chr1:154111641-154111851+;Distance=748;DiscordantMatePairAlignments=38;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_152280:+;RightGenes=NM_152280:+;XRef=rs72087925 (chr1:154110887-154111635);Frequency=0.35
chr1	CG	SV	154110893	154111542	38	+	.	ID=5793;Type=deletion;Left=chr1:154110893-154111542;Right=chr1:154111641-154111851
chr1	CG	SV	154111641	154111851	38	+	.	ID=5793;Type=deletion;Left=chr1:154110893-154111542;Right=chr1:154111641-154111851
chr1	CG	SV	154793335	154796273	499	.	.	ID=5790;Type=deletion;Left=chr1:154793335-154793983+;Right=chr1:154795566-154796273+;Distance=2231;DiscordantMatePairAlignments=499;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_178229:-;RightGenes=NM_178229:-;XRef=rs68110015 (chr1:154793347-154795578);Frequency=1.00
chr1	CG	SV	154793335	154793983	499	+	.	ID=5790;Type=deletion;Left=chr1:154793335-154793983;Right=chr1:154795566-154796273
chr1	CG	SV	154795566	154796273	499	+	.	ID=5790;Type=deletion;Left=chr1:154793335-154793983;Right=chr1:154795566-154796273
chr1	CG	SV	155440488	155442407	37	.	.	ID=5789;Type=deletion;Left=chr1:155440488-155441248+;Right=chr1:155442020-155442407+;Distance=1532;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr1	CG	SV	155440488	155441248	37	+	.	ID=5789;Type=deletion;Left=chr1:155440488-155441248;Right=chr1:155442020-155442407
chr1	CG	SV	155442020	155442407	37	+	.	ID=5789;Type=deletion;Left=chr1:155440488-155441248;Right=chr1:155442020-155442407
chr1	CG	SV	156153338	156154713	10	.	.	ID=934;Type=distal-duplication;Left=chr1:156153338-156153769-;Right=chr1:156154573-156154713+;Distance=804;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr1	CG	SV	156153338	156153769	10	-	.	ID=934;Type=distal-duplication;Left=chr1:156153338-156153769;Right=chr1:156154573-156154713
chr1	CG	SV	156154573	156154713	10	-	.	ID=934;Type=distal-duplication;Left=chr1:156153338-156153769;Right=chr1:156154573-156154713
chr1	CG	SV	156153970	156154372	15	.	.	ID=6165;Type=distal-duplication;Left=chr1:156153970-156154680+;Right=chr1:156154146-156154372-;Distance=402;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr1	CG	SV	156153970	156154680	15	+	.	ID=6165;Type=distal-duplication;Left=chr1:156153970-156154680;Right=chr1:156154146-156154372
chr1	CG	SV	156154146	156154372	15	+	.	ID=6165;Type=distal-duplication;Left=chr1:156153970-156154680;Right=chr1:156154146-156154372
chr1	CG	SV	157134157	157137155	57	.	.	ID=5763;Type=deletion;Left=chr1:157134157-157134716+;Right=chr1:157136608-157137155+;Distance=2451;DiscordantMatePairAlignments=57;LeftRepeat=L1MA9:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66519609 (chr1:157134154-157136605);Frequency=1.00
chr1	CG	SV	157134157	157134716	57	+	.	ID=5763;Type=deletion;Left=chr1:157134157-157134716;Right=chr1:157136608-157137155
chr1	CG	SV	157136608	157137155	57	+	.	ID=5763;Type=deletion;Left=chr1:157134157-157134716;Right=chr1:157136608-157137155
chr1	CG	SV	157915332	157916986	180	.	.	ID=5762;Type=deletion;Left=chr1:157915332-157916034+;Right=chr1:157916282-157916986+;Distance=950;DiscordantMatePairAlignments=180;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67706473 (chr1:157915331-157916281);Frequency=0.88
chr1	CG	SV	157915332	157916034	180	+	.	ID=5762;Type=deletion;Left=chr1:157915332-157916034;Right=chr1:157916282-157916986
chr1	CG	SV	157916282	157916986	180	+	.	ID=5762;Type=deletion;Left=chr1:157915332-157916034;Right=chr1:157916282-157916986
chr1	CG	SV	177596378	177600817	25	.	.	ID=5750;Type=deletion;Left=chr1:177596378-177596871+;Right=chr1:177600386-177600817+;Distance=4008;DiscordantMatePairAlignments=25;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr1	CG	SV	177596378	177596871	25	+	.	ID=5750;Type=deletion;Left=chr1:177596378-177596871;Right=chr1:177600386-177600817
chr1	CG	SV	177600386	177600817	25	+	.	ID=5750;Type=deletion;Left=chr1:177596378-177596871;Right=chr1:177600386-177600817
chr1	CG	SV	183081354	183087927	286	.	.	ID=5747;Type=deletion;Left=chr1:183081354-183082141+;Right=chr1:183087410-183087927+;Distance=6056;DiscordantMatePairAlignments=286;LeftRepeat=FLAM_C:SINE:Alu;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=NM_052966:-;RightGenes=NM_052966:-;XRef=rs67214927 (chr1:183081351-183087407);Frequency=0.59
chr1	CG	SV	183081354	183082141	286	+	.	ID=5747;Type=deletion;Left=chr1:183081354-183082141;Right=chr1:183087410-183087927
chr1	CG	SV	183087410	183087927	286	+	.	ID=5747;Type=deletion;Left=chr1:183081354-183082141;Right=chr1:183087410-183087927
chr1	CG	SV	184030915	185060212	51	.	.	ID=2151;Type=tandem-duplication;Left=chr1:184030915-184031437-;Right=chr1:185059703-185060212-;Distance=1028775;DiscordantMatePairAlignments=51;LeftRepeat=;RightRepeat=;LeftGenes=NM_031935:+;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	184030915	184031437	51	-	.	ID=2151;Type=tandem-duplication;Left=chr1:184030915-184031437;Right=chr1:185059703-185060212
chr1	CG	SV	185059703	185060212	51	-	.	ID=2151;Type=tandem-duplication;Left=chr1:184030915-184031437;Right=chr1:185059703-185060212
chr1	CG	SV	185031621	185032284	23	.	.	ID=5745;Type=deletion;Left=chr1:185031621-185032250+;Right=chr1:185032116-185032284+;Distance=495;DiscordantMatePairAlignments=23;LeftRepeat=Tandem period 495;RightRepeat=Tandem period 495;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr1	CG	SV	185031621	185032250	23	+	.	ID=5745;Type=deletion;Left=chr1:185031621-185032250;Right=chr1:185032116-185032284
chr1	CG	SV	185032116	185032284	23	+	.	ID=5745;Type=deletion;Left=chr1:185031621-185032250;Right=chr1:185032116-185032284
chr1	CG	SV	185092796	185093002	11	.	.	ID=6163;Type=probable-inversion;Left=chr1:185092796-185093379+;Right=chr1:185092930-185093002-;Distance=206;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_024420:+;RightGenes=NM_024420:+;XRef=;Frequency=0.88
chr1	CG	SV	185092796	185093379	11	+	.	ID=6163;Type=probable-inversion;Left=chr1:185092796-185093379;Right=chr1:185092930-185093002
chr1	CG	SV	185092930	185093002	11	+	.	ID=6163;Type=probable-inversion;Left=chr1:185092796-185093379;Right=chr1:185092930-185093002
chr1	CG	SV	185731451	185733350	104	.	.	ID=6162;Type=complex;Left=chr1:185731451-185732080+;Right=chr1:185733096-185733350-;Distance=1899;DiscordantMatePairAlignments=104;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185731451	185732080	104	+	.	ID=6162;Type=complex;Left=chr1:185731451-185732080;Right=chr1:185733096-185733350
chr1	CG	SV	185733096	185733350	104	+	.	ID=6162;Type=complex;Left=chr1:185731451-185732080;Right=chr1:185733096-185733350
chr1	CG	SV	185731451	185733712	46	.	.	ID=5744;Type=complex;Left=chr1:185731451-185731801+;Right=chr1:185733347-185733712+;Distance=1896;DiscordantMatePairAlignments=46;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185731451	185731801	46	+	.	ID=5744;Type=complex;Left=chr1:185731451-185731801;Right=chr1:185733347-185733712
chr1	CG	SV	185733347	185733712	46	+	.	ID=5744;Type=complex;Left=chr1:185731451-185731801;Right=chr1:185733347-185733712
chr1	CG	SV	185732845	185733948	117	.	.	ID=932;Type=complex;Left=chr1:185732845-185733098-;Right=chr1:185733355-185733948+;Distance=257;DiscordantMatePairAlignments=117;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr1	CG	SV	185732845	185733098	117	-	.	ID=932;Type=complex;Left=chr1:185732845-185733098;Right=chr1:185733355-185733948
chr1	CG	SV	185733355	185733948	117	-	.	ID=932;Type=complex;Left=chr1:185732845-185733098;Right=chr1:185733355-185733948
chr1	CG	SV	185982729	185989757	142	.	.	ID=5743;Type=deletion;Left=chr1:185982729-185983306+;Right=chr1:185989157-185989757+;Distance=6428;DiscordantMatePairAlignments=142;LeftRepeat=LTR52-int:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	185982729	185983306	142	+	.	ID=5743;Type=deletion;Left=chr1:185982729-185983306;Right=chr1:185989157-185989757
chr1	CG	SV	185989157	185989757	142	+	.	ID=5743;Type=deletion;Left=chr1:185982729-185983306;Right=chr1:185989157-185989757
chr1	CG	SV	186806078	186807513	289	.	.	ID=5742;Type=deletion;Left=chr1:186806078-186806690+;Right=chr1:186806853-186807513+;Distance=775;DiscordantMatePairAlignments=289;LeftRepeat=L1MB7:LINE:L1;RightRepeat=L1MCa:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72255816 (chr1:186806077-186806852);Frequency=1.00
chr1	CG	SV	186806078	186806690	289	+	.	ID=5742;Type=deletion;Left=chr1:186806078-186806690;Right=chr1:186806853-186807513
chr1	CG	SV	186806853	186807513	289	+	.	ID=5742;Type=deletion;Left=chr1:186806078-186806690;Right=chr1:186806853-186807513
chr1	CG	SV	187467473	187469113	24	.	.	ID=5741;Type=deletion;Left=chr1:187467473-187467950+;Right=chr1:187468454-187469113+;Distance=981;DiscordantMatePairAlignments=24;LeftRepeat=;RightRepeat=L1P5:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	187467473	187467950	24	+	.	ID=5741;Type=deletion;Left=chr1:187467473-187467950;Right=chr1:187468454-187469113
chr1	CG	SV	187468454	187469113	24	+	.	ID=5741;Type=deletion;Left=chr1:187467473-187467950;Right=chr1:187468454-187469113
chr1	CG	SV	187912364	187921208	74	.	.	ID=2150;Type=tandem-duplication;Left=chr1:187912364-187912877-;Right=chr1:187920747-187921208-;Distance=8331;DiscordantMatePairAlignments=74;LeftRepeat=LTR48B:LTR:ERV1;RightRepeat=MLT1L:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	187912364	187912877	74	-	.	ID=2150;Type=tandem-duplication;Left=chr1:187912364-187912877;Right=chr1:187920747-187921208
chr1	CG	SV	187920747	187921208	74	-	.	ID=2150;Type=tandem-duplication;Left=chr1:187912364-187912877;Right=chr1:187920747-187921208
chr1	CG	SV	190053381	190054052	10	.	.	ID=5740;Type=deletion;Left=chr1:190053381-190054080+;Right=chr1:190053746-190054052+;Distance=365;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	190053381	190054080	10	+	.	ID=5740;Type=deletion;Left=chr1:190053381-190054080;Right=chr1:190053746-190054052
chr1	CG	SV	190053746	190054052	10	+	.	ID=5740;Type=deletion;Left=chr1:190053381-190054080;Right=chr1:190053746-190054052
chr1	CG	SV	195767136	195770534	298	.	.	ID=5737;Type=deletion;Left=chr1:195767136-195767826+;Right=chr1:195769899-195770534+;Distance=2763;DiscordantMatePairAlignments=298;LeftRepeat=;RightRepeat=L1HS:LINE:L1;LeftGenes=NM_001142795:-;RightGenes=NM_001142795:-;XRef=rs68029239 (chr1:195767131-195769894);Frequency=1.00
chr1	CG	SV	195767136	195767826	298	+	.	ID=5737;Type=deletion;Left=chr1:195767136-195767826;Right=chr1:195769899-195770534
chr1	CG	SV	195769899	195770534	298	+	.	ID=5737;Type=deletion;Left=chr1:195767136-195767826;Right=chr1:195769899-195770534
chr1	CG	SV	196571279	196577216	67	.	.	ID=5736;Type=deletion;Left=chr1:196571279-196571792+;Right=chr1:196576904-196577216+;Distance=5625;DiscordantMatePairAlignments=67;LeftRepeat=L1PA12:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr1	CG	SV	196571279	196571792	67	+	.	ID=5736;Type=deletion;Left=chr1:196571279-196571792;Right=chr1:196576904-196577216
chr1	CG	SV	196576904	196577216	67	+	.	ID=5736;Type=deletion;Left=chr1:196571279-196571792;Right=chr1:196576904-196577216
chr1	CG	SV	197040372	197042519	144	.	.	ID=5735;Type=deletion;Left=chr1:197040372-197040997+;Right=chr1:197042037-197042519+;Distance=1665;DiscordantMatePairAlignments=144;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs71795251 (chr1:197040372-197042037);Frequency=0.29
chr1	CG	SV	197040372	197040997	144	+	.	ID=5735;Type=deletion;Left=chr1:197040372-197040997;Right=chr1:197042037-197042519
chr1	CG	SV	197042037	197042519	144	+	.	ID=5735;Type=deletion;Left=chr1:197040372-197040997;Right=chr1:197042037-197042519
chr1	CG	SV	197705360	197707409	108	.	.	ID=5734;Type=deletion;Left=chr1:197705360-197706032+;Right=chr1:197706867-197707409+;Distance=1507;DiscordantMatePairAlignments=108;LeftRepeat=MLT1A1:LTR:MaLR;RightRepeat=MLT1A1:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67023442 (chr1:197705349-197706856);Frequency=1.00
chr1	CG	SV	197705360	197706032	108	+	.	ID=5734;Type=deletion;Left=chr1:197705360-197706032;Right=chr1:197706867-197707409
chr1	CG	SV	197706867	197707409	108	+	.	ID=5734;Type=deletion;Left=chr1:197705360-197706032;Right=chr1:197706867-197707409
chr1	CG	SV	203445294	203445416	54	.	.	ID=6160;Type=probable-inversion;Left=chr1:203445294-203445930+;Right=chr1:203445264-203445416-;Distance=122;DiscordantMatePairAlignments=54;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_015375:-;NM_199462:-;RightGenes=NM_015375:-;NM_199462:-;XRef=;Frequency=0.88
chr1	CG	SV	203445294	203445930	54	+	.	ID=6160;Type=probable-inversion;Left=chr1:203445294-203445930;Right=chr1:203445264-203445416
chr1	CG	SV	203445264	203445416	54	+	.	ID=6160;Type=probable-inversion;Left=chr1:203445294-203445930;Right=chr1:203445264-203445416
chr1	CG	SV	205358889	205360364	17	.	.	ID=929;Type=complex;Left=chr1:205358889-205358969-;Right=chr1:205359818-205360364+;Distance=849;DiscordantMatePairAlignments=17;LeftRepeat=MLT2F:LTR:ERVL;Self chain;RightRepeat=ERVL-F:LTR:ERVL;Self chain;LeftGenes=NM_000715:+;RightGenes=NM_000715:+;XRef=;Frequency=0.94
chr1	CG	SV	205358889	205358969	17	-	.	ID=929;Type=complex;Left=chr1:205358889-205358969;Right=chr1:205359818-205360364
chr1	CG	SV	205359818	205360364	17	-	.	ID=929;Type=complex;Left=chr1:205358889-205358969;Right=chr1:205359818-205360364
chr1	CG	SV	205358985	205359052	10	.	.	ID=6159;Type=complex;Left=chr1:205358985-205359539+;Right=chr1:205358970-205359052-;Distance=67;DiscordantMatePairAlignments=10;LeftRepeat=MLT2F:LTR:ERVL;Self chain;RightRepeat=MLT2F:LTR:ERVL;Self chain;LeftGenes=NM_000715:+;RightGenes=NM_000715:+;XRef=;Frequency=0.94
chr1	CG	SV	205358985	205359539	10	+	.	ID=6159;Type=complex;Left=chr1:205358985-205359539;Right=chr1:205358970-205359052
chr1	CG	SV	205358970	205359052	10	+	.	ID=6159;Type=complex;Left=chr1:205358985-205359539;Right=chr1:205358970-205359052
chr1	CG	SV	205358985	205360309	99	.	.	ID=5725;Type=complex;Left=chr1:205358985-205359366+;Right=chr1:205359818-205360309+;Distance=833;DiscordantMatePairAlignments=99;LeftRepeat=MLT2F:LTR:ERVL;Self chain;RightRepeat=ERVL-F:LTR:ERVL;Self chain;LeftGenes=NM_000715:+;RightGenes=NM_000715:+;XRef=;Frequency=0.94
chr1	CG	SV	205358985	205359366	99	+	.	ID=5725;Type=complex;Left=chr1:205358985-205359366;Right=chr1:205359818-205360309
chr1	CG	SV	205359818	205360309	99	+	.	ID=5725;Type=complex;Left=chr1:205358985-205359366;Right=chr1:205359818-205360309
chr1	CG	SV	205608640	205612775	107	.	.	ID=5724;Type=deletion;Left=chr1:205608640-205609270+;Right=chr1:205612241-205612775+;Distance=3601;DiscordantMatePairAlignments=107;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66713152 (chr1:205608586-205612187);Frequency=0.59
chr1	CG	SV	205608640	205609270	107	+	.	ID=5724;Type=deletion;Left=chr1:205608640-205609270;Right=chr1:205612241-205612775
chr1	CG	SV	205612241	205612775	107	+	.	ID=5724;Type=deletion;Left=chr1:205608640-205609270;Right=chr1:205612241-205612775
chr1	CG	SV	208144678	208153203	358	.	.	ID=5722;Type=deletion;Left=chr1:208144678-208145255+;Right=chr1:208152600-208153203+;Distance=7922;DiscordantMatePairAlignments=358;LeftRepeat=;RightRepeat=HERVL:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs72202560 (chr1:208144684-208152600);Frequency=0.53
chr1	CG	SV	208144678	208145255	358	+	.	ID=5722;Type=deletion;Left=chr1:208144678-208145255;Right=chr1:208152600-208153203
chr1	CG	SV	208152600	208153203	358	+	.	ID=5722;Type=deletion;Left=chr1:208144678-208145255;Right=chr1:208152600-208153203
chr1	CG	SV	208893658	208894166	18	.	.	ID=2149;Type=tandem-duplication;Left=chr1:208893658-208893848-;Right=chr1:208893948-208894166-;Distance=318;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;Tandem period 14;Tandem period 30;RightRepeat=Self chain;Tandem period 14;Tandem period 30;LeftGenes=NM_001122834:+;NM_018194:+;RightGenes=NM_001122834:+;NM_018194:+;XRef=;Frequency=1.00
chr1	CG	SV	208893658	208893848	18	-	.	ID=2149;Type=tandem-duplication;Left=chr1:208893658-208893848;Right=chr1:208893948-208894166
chr1	CG	SV	208893948	208894166	18	-	.	ID=2149;Type=tandem-duplication;Left=chr1:208893658-208893848;Right=chr1:208893948-208894166
chr1	CG	SV	210537768	210539788	241	.	.	ID=5720;Type=deletion;Left=chr1:210537768-210538187+;Right=chr1:210539249-210539788+;Distance=1481;DiscordantMatePairAlignments=241;LeftRepeat=;RightRepeat=;LeftGenes=NM_006243:+;RightGenes=NM_006243:+;XRef=rs67798000 (chr1:210537776-210539257);Frequency=0.88
chr1	CG	SV	210537768	210538187	241	+	.	ID=5720;Type=deletion;Left=chr1:210537768-210538187;Right=chr1:210539249-210539788
chr1	CG	SV	210539249	210539788	241	+	.	ID=5720;Type=deletion;Left=chr1:210537768-210538187;Right=chr1:210539249-210539788
chr1	CG	SV	210557014	210934739	51	.	.	ID=2148;Type=tandem-duplication;Left=chr1:210557014-210557564-;Right=chr1:210934269-210934739-;Distance=377175;DiscordantMatePairAlignments=51;LeftRepeat=Charlie9:DNA:MER1_type;RightRepeat=;LeftGenes=NM_006243:+;RightGenes=NM_018664:-;XRef=;Frequency=0.00
chr1	CG	SV	210557014	210557564	51	-	.	ID=2148;Type=tandem-duplication;Left=chr1:210557014-210557564;Right=chr1:210934269-210934739
chr1	CG	SV	210934269	210934739	51	-	.	ID=2148;Type=tandem-duplication;Left=chr1:210557014-210557564;Right=chr1:210934269-210934739
chr1	CG	SV	216249125	216255890	80	.	.	ID=5717;Type=deletion;Left=chr1:216249125-216249608+;Right=chr1:216255231-216255890+;Distance=6106;DiscordantMatePairAlignments=80;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	216249125	216249608	80	+	.	ID=5717;Type=deletion;Left=chr1:216249125-216249608;Right=chr1:216255231-216255890
chr1	CG	SV	216255231	216255890	80	+	.	ID=5717;Type=deletion;Left=chr1:216249125-216249608;Right=chr1:216255231-216255890
chr1	CG	SV	216312261	216313818	92	.	.	ID=5716;Type=deletion;Left=chr1:216312261-216312920+;Right=chr1:216313122-216313818+;Distance=861;DiscordantMatePairAlignments=92;LeftRepeat=L1HS:LINE:L1;RightRepeat=MER45B:DNA:Tip100;LeftGenes=;RightGenes=;XRef=rs70942859 (chr1:216312261-216313122);Frequency=0.94
chr1	CG	SV	216312261	216312920	92	+	.	ID=5716;Type=deletion;Left=chr1:216312261-216312920;Right=chr1:216313122-216313818
chr1	CG	SV	216313122	216313818	92	+	.	ID=5716;Type=deletion;Left=chr1:216312261-216312920;Right=chr1:216313122-216313818
chr1	CG	SV	220440788	220447544	104	.	.	ID=5712;Type=deletion;Left=chr1:220440788-220441385+;Right=chr1:220447162-220447544+;Distance=6374;DiscordantMatePairAlignments=104;LeftRepeat=AluSg:SINE:Alu;RightRepeat=L1PA17:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr1	CG	SV	220440788	220441385	104	+	.	ID=5712;Type=deletion;Left=chr1:220440788-220441385;Right=chr1:220447162-220447544
chr1	CG	SV	220447162	220447544	104	+	.	ID=5712;Type=deletion;Left=chr1:220440788-220441385;Right=chr1:220447162-220447544
chr1	CG	SV	221270211	221270911	59	-	.	ID=702;Type=interchromosomal;Left=chr1:221270211-221270911-;Right=chr15:63333071-63333672+;Distance=;DiscordantMatePairAlignments=59;LeftRepeat=MER5B:DNA:MER1_type;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	63333071	63333672	59	-	.	ID=702;Type=interchromosomal;Left=chr1:221270211-221270911-;Right=chr15:63333071-63333672+;Distance=;DiscordantMatePairAlignments=59;LeftRepeat=MER5B:DNA:MER1_type;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	222313740	222314684	157	.	.	ID=5710;Type=deletion;Left=chr1:222313740-222314380+;Right=chr1:222314216-222314684+;Distance=476;DiscordantMatePairAlignments=157;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67408596 (chr1:222313740-222314216);Frequency=1.00
chr1	CG	SV	222313740	222314380	157	+	.	ID=5710;Type=deletion;Left=chr1:222313740-222314380;Right=chr1:222314216-222314684
chr1	CG	SV	222314216	222314684	157	+	.	ID=5710;Type=deletion;Left=chr1:222313740-222314380;Right=chr1:222314216-222314684
chr1	CG	SV	222459457	222460527	39	.	.	ID=5708;Type=deletion;Left=chr1:222459457-222459940+;Right=chr1:222459770-222460527+;Distance=313;DiscordantMatePairAlignments=39;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr1	CG	SV	222459457	222459940	39	+	.	ID=5708;Type=deletion;Left=chr1:222459457-222459940;Right=chr1:222459770-222460527
chr1	CG	SV	222459770	222460527	39	+	.	ID=5708;Type=deletion;Left=chr1:222459457-222459940;Right=chr1:222459770-222460527
chr1	CG	SV	223828944	223829818	16	.	.	ID=5707;Type=deletion;Left=chr1:223828944-223829616+;Right=chr1:223829262-223829818+;Distance=318;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=NM_001008493:-;NM_018212:-;RightGenes=NM_001008493:-;NM_018212:-;XRef=rs67238821 (chr1:223828930-223829230);Frequency=1.00
chr1	CG	SV	223828944	223829616	16	+	.	ID=5707;Type=deletion;Left=chr1:223828944-223829616;Right=chr1:223829262-223829818
chr1	CG	SV	223829262	223829818	16	+	.	ID=5707;Type=deletion;Left=chr1:223828944-223829616;Right=chr1:223829262-223829818
chr1	CG	SV	224069440	224070346	33	.	.	ID=5706;Type=deletion;Left=chr1:224069440-224070073+;Right=chr1:224069767-224070346+;Distance=327;DiscordantMatePairAlignments=33;LeftRepeat=;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_001136018:+;RightGenes=NM_001136018:+;XRef=;Frequency=0.35
chr1	CG	SV	224069440	224070073	33	+	.	ID=5706;Type=deletion;Left=chr1:224069440-224070073;Right=chr1:224069767-224070346
chr1	CG	SV	224069767	224070346	33	+	.	ID=5706;Type=deletion;Left=chr1:224069440-224070073;Right=chr1:224069767-224070346
chr1	CG	SV	225051962	225053049	18	.	.	ID=5704;Type=deletion;Left=chr1:225051962-225052330+;Right=chr1:225052730-225053049+;Distance=768;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;Tandem period 345;Tandem period 39;RightRepeat=Self chain;Tandem period 345;Tandem period 39;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr1	CG	SV	225051962	225052330	18	+	.	ID=5704;Type=deletion;Left=chr1:225051962-225052330;Right=chr1:225052730-225053049
chr1	CG	SV	225052730	225053049	18	+	.	ID=5704;Type=deletion;Left=chr1:225051962-225052330;Right=chr1:225052730-225053049
chr1	CG	SV	227440011	227441004	18	.	.	ID=5695;Type=deletion;Left=chr1:227440011-227440663+;Right=chr1:227440385-227441004+;Distance=374;DiscordantMatePairAlignments=18;LeftRepeat=L1ME4a:LINE:L1;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71748063 (chr1:227440011-227440385);Frequency=0.59
chr1	CG	SV	227440011	227440663	18	+	.	ID=5695;Type=deletion;Left=chr1:227440011-227440663;Right=chr1:227440385-227441004
chr1	CG	SV	227440385	227441004	18	+	.	ID=5695;Type=deletion;Left=chr1:227440011-227440663;Right=chr1:227440385-227441004
chr1	CG	SV	227879160	227888077	215	.	.	ID=5693;Type=deletion;Left=chr1:227879160-227879757+;Right=chr1:227887463-227888077+;Distance=8303;DiscordantMatePairAlignments=215;LeftRepeat=;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66826980 (chr1:227879160-227887463);Frequency=0.47
chr1	CG	SV	227879160	227879757	215	+	.	ID=5693;Type=deletion;Left=chr1:227879160-227879757;Right=chr1:227887463-227888077
chr1	CG	SV	227887463	227888077	215	+	.	ID=5693;Type=deletion;Left=chr1:227879160-227879757;Right=chr1:227887463-227888077
chr1	CG	SV	228199261	228201126	163	.	.	ID=5692;Type=deletion;Left=chr1:228199261-228199929+;Right=chr1:228200501-228201126+;Distance=1240;DiscordantMatePairAlignments=163;LeftRepeat=AluSc:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr1	CG	SV	228199261	228199929	163	+	.	ID=5692;Type=deletion;Left=chr1:228199261-228199929;Right=chr1:228200501-228201126
chr1	CG	SV	228200501	228201126	163	+	.	ID=5692;Type=deletion;Left=chr1:228199261-228199929;Right=chr1:228200501-228201126
chr1	CG	SV	234121214	234122218	17	.	.	ID=5688;Type=deletion;Left=chr1:234121214-234121828+;Right=chr1:234121552-234122218+;Distance=338;DiscordantMatePairAlignments=17;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68079622 (chr1:234121214-234121552);Frequency=0.88
chr1	CG	SV	234121214	234121828	17	+	.	ID=5688;Type=deletion;Left=chr1:234121214-234121828;Right=chr1:234121552-234122218
chr1	CG	SV	234121552	234122218	17	+	.	ID=5688;Type=deletion;Left=chr1:234121214-234121828;Right=chr1:234121552-234122218
chr1	CG	SV	234615721	234618528	131	.	.	ID=5687;Type=deletion;Left=chr1:234615721-234616420+;Right=chr1:234617964-234618528+;Distance=2243;DiscordantMatePairAlignments=131;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67414199 (chr1:234615726-234617969);Frequency=1.00
chr1	CG	SV	234615721	234616420	131	+	.	ID=5687;Type=deletion;Left=chr1:234615721-234616420;Right=chr1:234617964-234618528
chr1	CG	SV	234617964	234618528	131	+	.	ID=5687;Type=deletion;Left=chr1:234615721-234616420;Right=chr1:234617964-234618528
chr1	CG	SV	235632623	235633317	19	.	.	ID=926;Type=inversion;Left=chr1:235632623-235632726-;Right=chr1:235632830-235633317+;Distance=104;DiscordantMatePairAlignments=19;LeftRepeat=AluJb:SINE:Alu;AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_001035:+;RightGenes=NM_001035:+;XRef=;Frequency=1.00
chr1	CG	SV	235632623	235632726	19	-	.	ID=926;Type=inversion;Left=chr1:235632623-235632726;Right=chr1:235632830-235633317
chr1	CG	SV	235632830	235633317	19	-	.	ID=926;Type=inversion;Left=chr1:235632623-235632726;Right=chr1:235632830-235633317
chr1	CG	SV	235632729	235632827	10	.	.	ID=6156;Type=inversion;Left=chr1:235632729-235633128+;Right=chr1:235632735-235632827-;Distance=98;DiscordantMatePairAlignments=10;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_001035:+;RightGenes=NM_001035:+;XRef=;Frequency=0.94
chr1	CG	SV	235632729	235633128	10	+	.	ID=6156;Type=inversion;Left=chr1:235632729-235633128;Right=chr1:235632735-235632827
chr1	CG	SV	235632735	235632827	10	+	.	ID=6156;Type=inversion;Left=chr1:235632729-235633128;Right=chr1:235632735-235632827
chr1	CG	SV	238707867	238708681	26	.	.	ID=5683;Type=deletion;Left=chr1:238707867-238708574+;Right=chr1:238708269-238708681+;Distance=402;DiscordantMatePairAlignments=26;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72000745 (chr1:238707748-238708150);Frequency=0.76
chr1	CG	SV	238707867	238708574	26	+	.	ID=5683;Type=deletion;Left=chr1:238707867-238708574;Right=chr1:238708269-238708681
chr1	CG	SV	238708269	238708681	26	+	.	ID=5683;Type=deletion;Left=chr1:238707867-238708574;Right=chr1:238708269-238708681
chr1	CG	SV	239702746	243353657	211	.	.	ID=6155;Type=probable-inversion;Left=chr1:239702746-239703284+;Right=chr1:243353125-243353657-;Distance=3650911;DiscordantMatePairAlignments=211;LeftRepeat=L1MC2:LINE:L1;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001143943:+;NR_026586:+;NR_026587:+;XRef=;Frequency=0.00
chr1	CG	SV	239702746	239703284	211	+	.	ID=6155;Type=probable-inversion;Left=chr1:239702746-239703284;Right=chr1:243353125-243353657
chr1	CG	SV	243353125	243353657	211	+	.	ID=6155;Type=probable-inversion;Left=chr1:239702746-239703284;Right=chr1:243353125-243353657
chr1	CG	SV	239842716	239845360	137	.	.	ID=925;Type=probable-inversion;Left=chr1:239842716-239843487-;Right=chr1:239844780-239845360+;Distance=1293;DiscordantMatePairAlignments=137;LeftRepeat=;RightRepeat=Tandem period 45;LeftGenes=NM_014322:-;RightGenes=NM_014322:-;XRef=;Frequency=0.00
chr1	CG	SV	239842716	239843487	137	-	.	ID=925;Type=probable-inversion;Left=chr1:239842716-239843487;Right=chr1:239844780-239845360
chr1	CG	SV	239844780	239845360	137	-	.	ID=925;Type=probable-inversion;Left=chr1:239842716-239843487;Right=chr1:239844780-239845360
chr1	CG	SV	241194419	241196313	124	.	.	ID=5679;Type=deletion;Left=chr1:241194419-241195059+;Right=chr1:241195863-241196313+;Distance=1444;DiscordantMatePairAlignments=124;LeftRepeat=AluJo:SINE:Alu;SegDup;Self chain;RightRepeat=AluSp:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr1	CG	SV	241194419	241195059	124	+	.	ID=5679;Type=deletion;Left=chr1:241194419-241195059;Right=chr1:241195863-241196313
chr1	CG	SV	241195863	241196313	124	+	.	ID=5679;Type=deletion;Left=chr1:241194419-241195059;Right=chr1:241195863-241196313
chr1	CG	SV	241849368	241851020	458	.	.	ID=5678;Type=deletion;Left=chr1:241849368-241850094+;Right=chr1:241850378-241851020+;Distance=1010;DiscordantMatePairAlignments=458;LeftRepeat=L1MA4:LINE:L1;RightRepeat=;LeftGenes=NM_005465:-;NM_181690:-;RightGenes=NM_005465:-;NM_181690:-;XRef=rs72260277 (chr1:241849390-241850386);Frequency=0.94
chr1	CG	SV	241849368	241850094	458	+	.	ID=5678;Type=deletion;Left=chr1:241849368-241850094;Right=chr1:241850378-241851020
chr1	CG	SV	241850378	241851020	458	+	.	ID=5678;Type=deletion;Left=chr1:241849368-241850094;Right=chr1:241850378-241851020
chr1	CG	SV	243470061	243489819	43	.	.	ID=2145;Type=tandem-duplication;Left=chr1:243470061-243470595-;Right=chr1:243489193-243489819-;Distance=19224;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=AluJb:SINE:Alu;LeftGenes=NM_018012:+;RightGenes=NM_018012:+;XRef=;Frequency=0.00
chr1	CG	SV	243470061	243470595	43	-	.	ID=2145;Type=tandem-duplication;Left=chr1:243470061-243470595;Right=chr1:243489193-243489819
chr1	CG	SV	243489193	243489819	43	-	.	ID=2145;Type=tandem-duplication;Left=chr1:243470061-243470595;Right=chr1:243489193-243489819
chr1	CG	SV	245917098	245923630	80	.	.	ID=5674;Type=deletion;Left=chr1:245917098-245917804+;Right=chr1:245923151-245923630+;Distance=6053;DiscordantMatePairAlignments=80;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72075933 (chr1:245917078-245923131);Frequency=0.94
chr1	CG	SV	245917098	245917804	80	+	.	ID=5674;Type=deletion;Left=chr1:245917098-245917804;Right=chr1:245923151-245923630
chr1	CG	SV	245923151	245923630	80	+	.	ID=5674;Type=deletion;Left=chr1:245917098-245917804;Right=chr1:245923151-245923630
chr1	CG	SV	246634052	246634169	24	.	.	ID=2143;Type=tandem-duplication;Left=chr1:246634052-246634124-;Right=chr1:246634090-246634169-;Distance=45;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr1	CG	SV	246634052	246634124	24	-	.	ID=2143;Type=tandem-duplication;Left=chr1:246634052-246634124;Right=chr1:246634090-246634169
chr1	CG	SV	246634090	246634169	24	-	.	ID=2143;Type=tandem-duplication;Left=chr1:246634052-246634124;Right=chr1:246634090-246634169
chr2	CG	SV	1337076	1338100	58	.	.	ID=5670;Type=deletion;Left=chr2:1337076-1337682+;Right=chr2:1337523-1338100+;Distance=447;DiscordantMatePairAlignments=58;LeftRepeat=Self chain;Tandem period 106;RightRepeat=MIRb:SINE:MIR;Self chain;Tandem period 115;LeftGenes=NM_018968:+;RightGenes=NM_018968:+;XRef=rs66735644 (chr2:1337076-1337519);Frequency=0.94
chr2	CG	SV	1337076	1337682	58	+	.	ID=5670;Type=deletion;Left=chr2:1337076-1337682;Right=chr2:1337523-1338100
chr2	CG	SV	1337523	1338100	58	+	.	ID=5670;Type=deletion;Left=chr2:1337076-1337682;Right=chr2:1337523-1338100
chr2	CG	SV	2777781	2778909	63	.	.	ID=5074;Type=deletion;Left=chr2:2777781-2778261+;Right=chr2:2778251-2778909+;Distance=470;DiscordantMatePairAlignments=63;LeftRepeat=Self chain;Tandem period 31;Tandem period 32;Tandem period 63;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67035310 (chr2:2777781-2778251);Frequency=0.76
chr2	CG	SV	2777781	2778261	63	+	.	ID=5074;Type=deletion;Left=chr2:2777781-2778261;Right=chr2:2778251-2778909
chr2	CG	SV	2778251	2778909	63	+	.	ID=5074;Type=deletion;Left=chr2:2777781-2778261;Right=chr2:2778251-2778909
chr2	CG	SV	3800675	3801816	27	.	.	ID=5073;Type=deletion;Left=chr2:3800675-3800965+;Right=chr2:3801473-3801816+;Distance=798;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;Tandem period 21;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72441557 (chr2:3800578-3801166);Frequency=0.65
chr2	CG	SV	3800675	3800965	27	+	.	ID=5073;Type=deletion;Left=chr2:3800675-3800965;Right=chr2:3801473-3801816
chr2	CG	SV	3801473	3801816	27	+	.	ID=5073;Type=deletion;Left=chr2:3800675-3800965;Right=chr2:3801473-3801816
chr2	CG	SV	4759185	4765920	125	.	.	ID=5072;Type=deletion;Left=chr2:4759185-4759558+;Right=chr2:4765250-4765920+;Distance=6065;DiscordantMatePairAlignments=125;LeftRepeat=;RightRepeat=L1M:LINE:L1;LeftGenes=;RightGenes=;XRef=rs74164256 (chr2:4759185-4765250);Frequency=1.00
chr2	CG	SV	4759185	4759558	125	+	.	ID=5072;Type=deletion;Left=chr2:4759185-4759558;Right=chr2:4765250-4765920
chr2	CG	SV	4765250	4765920	125	+	.	ID=5072;Type=deletion;Left=chr2:4759185-4759558;Right=chr2:4765250-4765920
chr2	CG	SV	9876688	9877672	19	.	.	ID=5068;Type=deletion;Left=chr2:9876688-9877235+;Right=chr2:9877038-9877672+;Distance=350;DiscordantMatePairAlignments=19;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=FRAM:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr2	CG	SV	9876688	9877235	19	+	.	ID=5068;Type=deletion;Left=chr2:9876688-9877235;Right=chr2:9877038-9877672
chr2	CG	SV	9877038	9877672	19	+	.	ID=5068;Type=deletion;Left=chr2:9876688-9877235;Right=chr2:9877038-9877672
chr2	CG	SV	10743488	10744646	111	.	.	ID=6154;Type=distal-duplication;Left=chr2:10743488-10743959+;Right=chr2:10744473-10744646-;Distance=1158;DiscordantMatePairAlignments=111;LeftRepeat=AluJb:SINE:Alu;RightRepeat=L3:LINE:CR1;LeftGenes=NM_024894:-;RightGenes=NM_024894:-;XRef=;Frequency=0.35
chr2	CG	SV	10743488	10743959	111	+	.	ID=6154;Type=distal-duplication;Left=chr2:10743488-10743959;Right=chr2:10744473-10744646
chr2	CG	SV	10744473	10744646	111	+	.	ID=6154;Type=distal-duplication;Left=chr2:10743488-10743959;Right=chr2:10744473-10744646
chr2	CG	SV	10742712	10744647	111	.	.	ID=923;Type=distal-duplication;Left=chr2:10742712-10743496-;Right=chr2:10744477-10744647+;Distance=981;DiscordantMatePairAlignments=111;LeftRepeat=AluJb:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=NM_024894:-;RightGenes=NM_024894:-;XRef=;Frequency=0.35
chr2	CG	SV	10742712	10743496	111	-	.	ID=923;Type=distal-duplication;Left=chr2:10742712-10743496;Right=chr2:10744477-10744647
chr2	CG	SV	10744477	10744647	111	-	.	ID=923;Type=distal-duplication;Left=chr2:10742712-10743496;Right=chr2:10744477-10744647
chr2	CG	SV	11166249	11166948	12	.	.	ID=5067;Type=deletion;Left=chr2:11166249-11166877+;Right=chr2:11166610-11166948+;Distance=361;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72468728 (chr2:11166057-11166422);Frequency=0.35
chr2	CG	SV	11166249	11166877	12	+	.	ID=5067;Type=deletion;Left=chr2:11166249-11166877;Right=chr2:11166610-11166948
chr2	CG	SV	11166610	11166948	12	+	.	ID=5067;Type=deletion;Left=chr2:11166249-11166877;Right=chr2:11166610-11166948
chr2	CG	SV	16168556	16169564	10	.	.	ID=5066;Type=deletion;Left=chr2:16168556-16169020+;Right=chr2:16168882-16169564+;Distance=326;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	16168556	16169020	10	+	.	ID=5066;Type=deletion;Left=chr2:16168556-16169020;Right=chr2:16168882-16169564
chr2	CG	SV	16168882	16169564	10	+	.	ID=5066;Type=deletion;Left=chr2:16168556-16169020;Right=chr2:16168882-16169564
chr2	CG	SV	20530159	20531188	20	.	.	ID=5064;Type=deletion;Left=chr2:20530159-20530717+;Right=chr2:20530466-20531188+;Distance=307;DiscordantMatePairAlignments=20;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67436233 (chr2:20530159-20530466);Frequency=0.47
chr2	CG	SV	20530159	20530717	20	+	.	ID=5064;Type=deletion;Left=chr2:20530159-20530717;Right=chr2:20530466-20531188
chr2	CG	SV	20530466	20531188	20	+	.	ID=5064;Type=deletion;Left=chr2:20530159-20530717;Right=chr2:20530466-20531188
chr2	CG	SV	32945242	32949817	10	.	.	ID=5055;Type=deletion;Left=chr2:32945242-32945759+;Right=chr2:32949138-32949817+;Distance=3896;DiscordantMatePairAlignments=10;LeftRepeat=(TCTCCC)n:Simple_repeat:Simple_repeat;Tandem TCTCCC;RightRepeat=L1PA16:LINE:L1;LeftGenes=NR_027098:+;RightGenes=NR_027098:+;XRef=;Frequency=0.65
chr2	CG	SV	32945242	32945759	10	+	.	ID=5055;Type=deletion;Left=chr2:32945242-32945759;Right=chr2:32949138-32949817
chr2	CG	SV	32949138	32949817	10	+	.	ID=5055;Type=deletion;Left=chr2:32945242-32945759;Right=chr2:32949138-32949817
chr2	CG	SV	33077966	33081275	109	.	.	ID=5054;Type=deletion;Left=chr2:33077966-33078544+;Right=chr2:33080796-33081275+;Distance=2830;DiscordantMatePairAlignments=109;LeftRepeat=MER5B:DNA:MER1_type;RightRepeat=;LeftGenes=NM_206943:+;RightGenes=NM_206943:+;XRef=rs72458672 (chr2:33077966-33080796);Frequency=0.59
chr2	CG	SV	33077966	33078544	109	+	.	ID=5054;Type=deletion;Left=chr2:33077966-33078544;Right=chr2:33080796-33081275
chr2	CG	SV	33080796	33081275	109	+	.	ID=5054;Type=deletion;Left=chr2:33077966-33078544;Right=chr2:33080796-33081275
chr2	CG	SV	33618082	33618766	100	.	.	ID=6151;Type=probable-inversion;Left=chr2:33618082-33618559+;Right=chr2:33618242-33618766-;Distance=684;DiscordantMatePairAlignments=100;LeftRepeat=;RightRepeat=;LeftGenes=NM_001139488:+;NM_015376:+;NM_170672:+;RightGenes=NM_001139488:+;NM_015376:+;NM_170672:+;XRef=;Frequency=0.10
chr2	CG	SV	33618082	33618559	100	+	.	ID=6151;Type=probable-inversion;Left=chr2:33618082-33618559;Right=chr2:33618242-33618766
chr2	CG	SV	33618242	33618766	100	+	.	ID=6151;Type=probable-inversion;Left=chr2:33618082-33618559;Right=chr2:33618242-33618766
chr2	CG	SV	34377160	34379862	75	.	.	ID=5053;Type=deletion;Left=chr2:34377160-34377712+;Right=chr2:34379225-34379862+;Distance=2065;DiscordantMatePairAlignments=75;LeftRepeat=;RightRepeat=L1PA6:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67806724 (chr2:34377158-34379223);Frequency=0.76
chr2	CG	SV	34377160	34377712	75	+	.	ID=5053;Type=deletion;Left=chr2:34377160-34377712;Right=chr2:34379225-34379862
chr2	CG	SV	34379225	34379862	75	+	.	ID=5053;Type=deletion;Left=chr2:34377160-34377712;Right=chr2:34379225-34379862
chr2	CG	SV	34819231	34821309	112	.	.	ID=5051;Type=deletion;Left=chr2:34819231-34819778+;Right=chr2:34820773-34821309+;Distance=1542;DiscordantMatePairAlignments=112;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr2	CG	SV	34819231	34819778	112	+	.	ID=5051;Type=deletion;Left=chr2:34819231-34819778;Right=chr2:34820773-34821309
chr2	CG	SV	34820773	34821309	112	+	.	ID=5051;Type=deletion;Left=chr2:34819231-34819778;Right=chr2:34820773-34821309
chr2	CG	SV	41629470	41635311	39	.	.	ID=5049;Type=deletion;Left=chr2:41629470-41630015+;Right=chr2:41634787-41635311+;Distance=5317;DiscordantMatePairAlignments=39;LeftRepeat=;RightRepeat=L1P5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66488562 (chr2:41629470-41634786);Frequency=0.47
chr2	CG	SV	41629470	41630015	39	+	.	ID=5049;Type=deletion;Left=chr2:41629470-41630015;Right=chr2:41634787-41635311
chr2	CG	SV	41634787	41635311	39	+	.	ID=5049;Type=deletion;Left=chr2:41629470-41630015;Right=chr2:41634787-41635311
chr2	CG	SV	41826658	41829941	102	.	.	ID=5047;Type=deletion;Left=chr2:41826658-41827326+;Right=chr2:41829382-41829941+;Distance=2724;DiscordantMatePairAlignments=102;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66596405 (chr2:41826660-41829384);Frequency=1.00
chr2	CG	SV	41826658	41827326	102	+	.	ID=5047;Type=deletion;Left=chr2:41826658-41827326;Right=chr2:41829382-41829941
chr2	CG	SV	41829382	41829941	102	+	.	ID=5047;Type=deletion;Left=chr2:41826658-41827326;Right=chr2:41829382-41829941
chr2	CG	SV	42199763	42201327	68	.	.	ID=5046;Type=deletion;Left=chr2:42199763-42200320+;Right=chr2:42200822-42201327+;Distance=1059;DiscordantMatePairAlignments=68;LeftRepeat=L1ME1:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr2	CG	SV	42199763	42200320	68	+	.	ID=5046;Type=deletion;Left=chr2:42199763-42200320;Right=chr2:42200822-42201327
chr2	CG	SV	42200822	42201327	68	+	.	ID=5046;Type=deletion;Left=chr2:42199763-42200320;Right=chr2:42200822-42201327
chr2	CG	SV	42300411	42307437	15	.	.	ID=5045;Type=deletion;Left=chr2:42300411-42300997+;Right=chr2:42307151-42307437+;Distance=6740;DiscordantMatePairAlignments=15;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_001145076:+;NM_019063:+;RightGenes=NM_001145076:+;NM_019063:+;XRef=;Frequency=0.00
chr2	CG	SV	42300411	42300997	15	+	.	ID=5045;Type=deletion;Left=chr2:42300411-42300997;Right=chr2:42307151-42307437
chr2	CG	SV	42307151	42307437	15	+	.	ID=5045;Type=deletion;Left=chr2:42300411-42300997;Right=chr2:42307151-42307437
chr2	CG	SV	44337957	44345266	22	.	.	ID=5043;Type=deletion;Left=chr2:44337957-44338487+;Right=chr2:44345041-44345266+;Distance=7084;DiscordantMatePairAlignments=22;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	44337957	44338487	22	+	.	ID=5043;Type=deletion;Left=chr2:44337957-44338487;Right=chr2:44345041-44345266
chr2	CG	SV	44345041	44345266	22	+	.	ID=5043;Type=deletion;Left=chr2:44337957-44338487;Right=chr2:44345041-44345266
chr2	CG	SV	51078052	51079561	86	.	.	ID=5038;Type=deletion;Left=chr2:51078052-51078775+;Right=chr2:51079047-51079561+;Distance=995;DiscordantMatePairAlignments=86;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_001135659:-;NM_004801:-;RightGenes=NM_001135659:-;NM_004801:-;XRef=rs67174145 (chr2:51078052-51079047);Frequency=0.06
chr2	CG	SV	51078052	51078775	86	+	.	ID=5038;Type=deletion;Left=chr2:51078052-51078775;Right=chr2:51079047-51079561
chr2	CG	SV	51079047	51079561	86	+	.	ID=5038;Type=deletion;Left=chr2:51078052-51078775;Right=chr2:51079047-51079561
chr2	CG	SV	51780091	51781888	46	.	.	ID=5037;Type=deletion;Left=chr2:51780091-51780690+;Right=chr2:51781274-51781888+;Distance=1183;DiscordantMatePairAlignments=46;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr2	CG	SV	51780091	51780690	46	+	.	ID=5037;Type=deletion;Left=chr2:51780091-51780690;Right=chr2:51781274-51781888
chr2	CG	SV	51781274	51781888	46	+	.	ID=5037;Type=deletion;Left=chr2:51780091-51780690;Right=chr2:51781274-51781888
chr2	CG	SV	53479276	53482168	50	.	.	ID=5035;Type=deletion;Left=chr2:53479276-53479808+;Right=chr2:53481513-53482168+;Distance=2237;DiscordantMatePairAlignments=50;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;LeftGenes=;RightGenes=;XRef=rs71878629 (chr2:53479276-53481513);Frequency=0.12
chr2	CG	SV	53479276	53479808	50	+	.	ID=5035;Type=deletion;Left=chr2:53479276-53479808;Right=chr2:53481513-53482168
chr2	CG	SV	53481513	53482168	50	+	.	ID=5035;Type=deletion;Left=chr2:53479276-53479808;Right=chr2:53481513-53482168
chr2	CG	SV	53626037	53632021	84	.	.	ID=5034;Type=deletion;Left=chr2:53626037-53626559+;Right=chr2:53631348-53632021+;Distance=5311;DiscordantMatePairAlignments=84;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	53626037	53626559	84	+	.	ID=5034;Type=deletion;Left=chr2:53626037-53626559;Right=chr2:53631348-53632021
chr2	CG	SV	53631348	53632021	84	+	.	ID=5034;Type=deletion;Left=chr2:53626037-53626559;Right=chr2:53631348-53632021
chr2	CG	SV	54418997	54421416	50	.	.	ID=5033;Type=deletion;Left=chr2:54418997-54419604+;Right=chr2:54420977-54421416+;Distance=1980;DiscordantMatePairAlignments=50;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=NM_001100396:+;RightGenes=NM_001100396:+;XRef=rs66784896 (chr2:54419000-54420977);Frequency=0.94
chr2	CG	SV	54418997	54419604	50	+	.	ID=5033;Type=deletion;Left=chr2:54418997-54419604;Right=chr2:54420977-54421416
chr2	CG	SV	54420977	54421416	50	+	.	ID=5033;Type=deletion;Left=chr2:54418997-54419604;Right=chr2:54420977-54421416
chr2	CG	SV	60547834	60549013	20	.	.	ID=5029;Type=deletion;Left=chr2:60547834-60548189+;Right=chr2:60548785-60549013+;Distance=951;DiscordantMatePairAlignments=20;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Tandem period 15;Tandem period 27;Tandem period 39;Tandem period 48;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Tandem period 15;Tandem period 27;Tandem period 39;Tandem period 48;LeftGenes=NM_018014:-;NM_022893:-;NM_138559:-;RightGenes=NM_018014:-;NM_022893:-;NM_138559:-;XRef=;Frequency=0.25
chr2	CG	SV	60547834	60548189	20	+	.	ID=5029;Type=deletion;Left=chr2:60547834-60548189;Right=chr2:60548785-60549013
chr2	CG	SV	60548785	60549013	20	+	.	ID=5029;Type=deletion;Left=chr2:60547834-60548189;Right=chr2:60548785-60549013
chr2	CG	SV	61553797	61556960	32	.	.	ID=920;Type=probable-inversion;Left=chr2:61553797-61554270-;Right=chr2:61556694-61556960+;Distance=2424;DiscordantMatePairAlignments=32;LeftRepeat=AluJo:SINE:Alu;RightRepeat=AluJo/FRAM:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr2	CG	SV	61553797	61554270	32	-	.	ID=920;Type=probable-inversion;Left=chr2:61553797-61554270;Right=chr2:61556694-61556960
chr2	CG	SV	61556694	61556960	32	-	.	ID=920;Type=probable-inversion;Left=chr2:61553797-61554270;Right=chr2:61556694-61556960
chr2	CG	SV	62204124	62205177	29	.	.	ID=5028;Type=deletion;Left=chr2:62204124-62204678+;Right=chr2:62204918-62205177+;Distance=794;DiscordantMatePairAlignments=29;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_152516:+;RightGenes=NM_152516:+;XRef=;Frequency=0.00
chr2	CG	SV	62204124	62204678	29	+	.	ID=5028;Type=deletion;Left=chr2:62204124-62204678;Right=chr2:62204918-62205177
chr2	CG	SV	62204918	62205177	29	+	.	ID=5028;Type=deletion;Left=chr2:62204124-62204678;Right=chr2:62204918-62205177
chr2	CG	SV	62465302	62468961	82	.	.	ID=6111;Type=complex;Left=chr2:62465302-62465909+;Right=chr2:62468545-62468961-;Distance=3659;DiscordantMatePairAlignments=82;LeftRepeat=;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	62465302	62465909	82	+	.	ID=6111;Type=complex;Left=chr2:62465302-62465909;Right=chr2:62468545-62468961
chr2	CG	SV	62468545	62468961	82	+	.	ID=6111;Type=complex;Left=chr2:62465302-62465909;Right=chr2:62468545-62468961
chr2	CG	SV	62467753	62471480	22	.	.	ID=919;Type=complex;Left=chr2:62467753-62468320-;Right=chr2:62471146-62471480+;Distance=2826;DiscordantMatePairAlignments=22;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	62467753	62468320	22	-	.	ID=919;Type=complex;Left=chr2:62467753-62468320;Right=chr2:62471146-62471480
chr2	CG	SV	62471146	62471480	22	-	.	ID=919;Type=complex;Left=chr2:62467753-62468320;Right=chr2:62471146-62471480
chr2	CG	SV	66359098	66361616	165	.	.	ID=5025;Type=deletion;Left=chr2:66359098-66359688+;Right=chr2:66361062-66361616+;Distance=1964;DiscordantMatePairAlignments=165;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs67498305 (chr2:66359098-66361062);Frequency=0.41
chr2	CG	SV	66359098	66359688	165	+	.	ID=5025;Type=deletion;Left=chr2:66359098-66359688;Right=chr2:66361062-66361616
chr2	CG	SV	66361062	66361616	165	+	.	ID=5025;Type=deletion;Left=chr2:66359098-66359688;Right=chr2:66361062-66361616
chr2	CG	SV	69978557	69979664	134	.	.	ID=5024;Type=deletion;Left=chr2:69978557-69979132+;Right=chr2:69979078-69979664+;Distance=521;DiscordantMatePairAlignments=134;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;LeftGenes=NM_006857:+;RightGenes=NM_006857:+;XRef=rs67525018 (chr2:69978548-69979069);Frequency=0.76
chr2	CG	SV	69978557	69979132	134	+	.	ID=5024;Type=deletion;Left=chr2:69978557-69979132;Right=chr2:69979078-69979664
chr2	CG	SV	69979078	69979664	134	+	.	ID=5024;Type=deletion;Left=chr2:69978557-69979132;Right=chr2:69979078-69979664
chr2	CG	SV	76380020	76382991	127	.	.	ID=5022;Type=deletion;Left=chr2:76380020-76380689+;Right=chr2:76382415-76382991+;Distance=2395;DiscordantMatePairAlignments=127;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68153335 (chr2:76380020-76382415);Frequency=1.00
chr2	CG	SV	76380020	76380689	127	+	.	ID=5022;Type=deletion;Left=chr2:76380020-76380689;Right=chr2:76382415-76382991
chr2	CG	SV	76382415	76382991	127	+	.	ID=5022;Type=deletion;Left=chr2:76380020-76380689;Right=chr2:76382415-76382991
chr2	CG	SV	77971399	77972485	42	.	.	ID=5021;Type=deletion;Left=chr2:77971399-77972100+;Right=chr2:77971866-77972485+;Distance=467;DiscordantMatePairAlignments=42;LeftRepeat=;RightRepeat=L1MA7:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72224379 (chr2:77971399-77971865);Frequency=0.47
chr2	CG	SV	77971399	77972100	42	+	.	ID=5021;Type=deletion;Left=chr2:77971399-77972100;Right=chr2:77971866-77972485
chr2	CG	SV	77971866	77972485	42	+	.	ID=5021;Type=deletion;Left=chr2:77971399-77972100;Right=chr2:77971866-77972485
chr2	CG	SV	88810360	88814037	357	.	.	ID=4948;Type=deletion;Left=chr2:88810360-88811135+;Right=chr2:88813414-88814037+;Distance=3054;DiscordantMatePairAlignments=357;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_144563:+;RightGenes=NM_144563:+;XRef=rs72121102 (chr2:88810343-88813397);Frequency=1.00
chr2	CG	SV	88810360	88811135	357	+	.	ID=4948;Type=deletion;Left=chr2:88810360-88811135;Right=chr2:88813414-88814037
chr2	CG	SV	88813414	88814037	357	+	.	ID=4948;Type=deletion;Left=chr2:88810360-88811135;Right=chr2:88813414-88814037
chr2	CG	SV	91043624	91049462	10	.	.	ID=4946;Type=deletion;Left=chr2:91043624-91044226+;Right=chr2:91049215-91049462+;Distance=5591;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	91043624	91044226	10	+	.	ID=4946;Type=deletion;Left=chr2:91043624-91044226;Right=chr2:91049215-91049462
chr2	CG	SV	91049215	91049462	10	+	.	ID=4946;Type=deletion;Left=chr2:91043624-91044226;Right=chr2:91049215-91049462
chr2	CG	SV	91148225	91149279	22	.	.	ID=4945;Type=deletion;Left=chr2:91148225-91148593+;Right=chr2:91149003-91149279+;Distance=778;DiscordantMatePairAlignments=22;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=AluSq:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs6146841 (chr2:91148022-91148798);Frequency=0.94
chr2	CG	SV	91148225	91148593	22	+	.	ID=4945;Type=deletion;Left=chr2:91148225-91148593;Right=chr2:91149003-91149279
chr2	CG	SV	91149003	91149279	22	+	.	ID=4945;Type=deletion;Left=chr2:91148225-91148593;Right=chr2:91149003-91149279
chr2	CG	SV	94892322	94912243	148	.	.	ID=4937;Type=complex;Left=chr2:94892322-94892909+;Right=chr2:94911773-94912243+;Distance=19451;DiscordantMatePairAlignments=148;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr2	CG	SV	94892322	94892909	148	+	.	ID=4937;Type=complex;Left=chr2:94892322-94892909;Right=chr2:94911773-94912243
chr2	CG	SV	94911773	94912243	148	+	.	ID=4937;Type=complex;Left=chr2:94892322-94892909;Right=chr2:94911773-94912243
chr2	CG	SV	94912261	94913699	28	.	.	ID=4935;Type=complex;Left=chr2:94912261-94912739+;Right=chr2:94912928-94913699+;Distance=667;DiscordantMatePairAlignments=28;LeftRepeat=(CA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem AC;RightRepeat=L1PA5:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr2	CG	SV	94912261	94912739	28	+	.	ID=4935;Type=complex;Left=chr2:94912261-94912739;Right=chr2:94912928-94913699
chr2	CG	SV	94912928	94913699	28	+	.	ID=4935;Type=complex;Left=chr2:94912261-94912739;Right=chr2:94912928-94913699
chr2	CG	SV	108676986	108678897	30	.	.	ID=4927;Type=deletion;Left=chr2:108676986-108677510+;Right=chr2:108678542-108678897+;Distance=1556;DiscordantMatePairAlignments=30;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L1MB7:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71831316 (chr2:108676746-108678213);Frequency=0.41
chr2	CG	SV	108676986	108677510	30	+	.	ID=4927;Type=deletion;Left=chr2:108676986-108677510;Right=chr2:108678542-108678897
chr2	CG	SV	108678542	108678897	30	+	.	ID=4927;Type=deletion;Left=chr2:108676986-108677510;Right=chr2:108678542-108678897
chr2	CG	SV	110210043	111170157	109	.	.	ID=4926;Type=deletion;Left=chr2:110210043-110210613+;Right=chr2:111169574-111170157+;Distance=959531;DiscordantMatePairAlignments=109;LeftRepeat=SegDup;Self chain;RightRepeat=LTR19B:LTR:ERV1;Self chain;LeftGenes=NM_005434:-;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	110210043	110210613	109	+	.	ID=4926;Type=deletion;Left=chr2:110210043-110210613;Right=chr2:111169574-111170157
chr2	CG	SV	111169574	111170157	109	+	.	ID=4926;Type=deletion;Left=chr2:110210043-110210613;Right=chr2:111169574-111170157
chr2	CG	SV	116690143	116694898	15	.	.	ID=2044;Type=complex;Left=chr2:116690143-116690611-;Right=chr2:116694614-116694898-;Distance=4287;DiscordantMatePairAlignments=15;LeftRepeat=;RightRepeat=L1M4c:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	116690143	116690611	15	-	.	ID=2044;Type=complex;Left=chr2:116690143-116690611;Right=chr2:116694614-116694898
chr2	CG	SV	116694614	116694898	15	-	.	ID=2044;Type=complex;Left=chr2:116690143-116690611;Right=chr2:116694614-116694898
chr2	CG	SV	116691104	116695424	91	.	.	ID=4925;Type=complex;Left=chr2:116691104-116691399+;Right=chr2:116694774-116695424+;Distance=3670;DiscordantMatePairAlignments=91;LeftRepeat=Charlie4:DNA:MER1_type;RightRepeat=L1M4c:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67592537 (chr2:116691104-116694774);Frequency=0.24
chr2	CG	SV	116691104	116691399	91	+	.	ID=4925;Type=complex;Left=chr2:116691104-116691399;Right=chr2:116694774-116695424
chr2	CG	SV	116694774	116695424	91	+	.	ID=4925;Type=complex;Left=chr2:116691104-116691399;Right=chr2:116694774-116695424
chr2	CG	SV	116694769	116698777	120	.	.	ID=6108;Type=complex;Left=chr2:116694769-116695373+;Right=chr2:116698363-116698777-;Distance=4008;DiscordantMatePairAlignments=120;LeftRepeat=L1M4c:LINE:L1;RightRepeat=L1M4c:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr2	CG	SV	116694769	116695373	120	+	.	ID=6108;Type=complex;Left=chr2:116694769-116695373;Right=chr2:116698363-116698777
chr2	CG	SV	116698363	116698777	120	+	.	ID=6108;Type=complex;Left=chr2:116694769-116695373;Right=chr2:116698363-116698777
chr2	CG	SV	116694454	116698596	39	.	.	ID=880;Type=complex;Left=chr2:116694454-116694773-;Right=chr2:116698351-116698596+;Distance=3578;DiscordantMatePairAlignments=39;LeftRepeat=L1M4c:LINE:L1;RightRepeat=L1M4c:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr2	CG	SV	116694454	116694773	39	-	.	ID=880;Type=complex;Left=chr2:116694454-116694773;Right=chr2:116698351-116698596
chr2	CG	SV	116698351	116698596	39	-	.	ID=880;Type=complex;Left=chr2:116694454-116694773;Right=chr2:116698351-116698596
chr2	CG	SV	119762084	119767593	64	.	.	ID=4923;Type=deletion;Left=chr2:119762084-119762562+;Right=chr2:119767011-119767593+;Distance=4927;DiscordantMatePairAlignments=64;LeftRepeat=L1ME2:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	119762084	119762562	64	+	.	ID=4923;Type=deletion;Left=chr2:119762084-119762562;Right=chr2:119767011-119767593
chr2	CG	SV	119767011	119767593	64	+	.	ID=4923;Type=deletion;Left=chr2:119762084-119762562;Right=chr2:119767011-119767593
chr2	CG	SV	119998871	119999614	101	.	.	ID=2043;Type=tandem-duplication;Left=chr2:119998871-119999252-;Right=chr2:119999297-119999614-;Distance=362;DiscordantMatePairAlignments=101;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr2	CG	SV	119998871	119999252	101	-	.	ID=2043;Type=tandem-duplication;Left=chr2:119998871-119999252;Right=chr2:119999297-119999614
chr2	CG	SV	119999297	119999614	101	-	.	ID=2043;Type=tandem-duplication;Left=chr2:119998871-119999252;Right=chr2:119999297-119999614
chr2	CG	SV	120133425	120134958	77	.	.	ID=2042;Type=distal-duplication;Left=chr2:120133425-120133549-;Right=chr2:120134176-120134958-;Distance=1409;DiscordantMatePairAlignments=77;LeftRepeat=L1MC4a:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	120133425	120133549	77	-	.	ID=2042;Type=distal-duplication;Left=chr2:120133425-120133549;Right=chr2:120134176-120134958
chr2	CG	SV	120134176	120134958	77	-	.	ID=2042;Type=distal-duplication;Left=chr2:120133425-120133549;Right=chr2:120134176-120134958
chr2	CG	SV	120133670	120135539	43	.	.	ID=4922;Type=distal-duplication;Left=chr2:120133670-120133790+;Right=chr2:120134968-120135539+;Distance=1298;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72020679 (chr2:120133667-120134965);Frequency=0.94
chr2	CG	SV	120133670	120133790	43	+	.	ID=4922;Type=distal-duplication;Left=chr2:120133670-120133790;Right=chr2:120134968-120135539
chr2	CG	SV	120134968	120135539	43	+	.	ID=4922;Type=distal-duplication;Left=chr2:120133670-120133790;Right=chr2:120134968-120135539
chr2	CG	SV	121514279	121515412	24	.	.	ID=4919;Type=deletion;Left=chr2:121514279-121514684+;Right=chr2:121514873-121515412+;Distance=594;DiscordantMatePairAlignments=24;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr2	CG	SV	121514279	121514684	24	+	.	ID=4919;Type=deletion;Left=chr2:121514279-121514684;Right=chr2:121514873-121515412
chr2	CG	SV	121514873	121515412	24	+	.	ID=4919;Type=deletion;Left=chr2:121514279-121514684;Right=chr2:121514873-121515412
chr2	CG	SV	123081348	123082401	36	.	.	ID=4917;Type=deletion;Left=chr2:123081348-123081946+;Right=chr2:123081846-123082401+;Distance=498;DiscordantMatePairAlignments=36;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr2	CG	SV	123081348	123081946	36	+	.	ID=4917;Type=deletion;Left=chr2:123081348-123081946;Right=chr2:123081846-123082401
chr2	CG	SV	123081846	123082401	36	+	.	ID=4917;Type=deletion;Left=chr2:123081348-123081946;Right=chr2:123081846-123082401
chr2	CG	SV	124768226	124769710	230	.	.	ID=6107;Type=distal-duplication;Left=chr2:124768226-124768835+;Right=chr2:124769381-124769710-;Distance=1484;DiscordantMatePairAlignments=230;LeftRepeat=;RightRepeat=MER41B:LTR:ERV1;LeftGenes=NM_130773:+;RightGenes=NM_130773:+;XRef=;Frequency=0.82
chr2	CG	SV	124768226	124768835	230	+	.	ID=6107;Type=distal-duplication;Left=chr2:124768226-124768835;Right=chr2:124769381-124769710
chr2	CG	SV	124769381	124769710	230	+	.	ID=6107;Type=distal-duplication;Left=chr2:124768226-124768835;Right=chr2:124769381-124769710
chr2	CG	SV	124767540	124769711	102	.	.	ID=879;Type=distal-duplication;Left=chr2:124767540-124768229-;Right=chr2:124769384-124769711+;Distance=1155;DiscordantMatePairAlignments=102;LeftRepeat=;RightRepeat=;LeftGenes=NM_130773:+;RightGenes=NM_130773:+;XRef=;Frequency=0.82
chr2	CG	SV	124767540	124768229	102	-	.	ID=879;Type=distal-duplication;Left=chr2:124767540-124768229;Right=chr2:124769384-124769711
chr2	CG	SV	124769384	124769711	102	-	.	ID=879;Type=distal-duplication;Left=chr2:124767540-124768229;Right=chr2:124769384-124769711
chr2	CG	SV	126159721	126168966	349	.	.	ID=4915;Type=deletion;Left=chr2:126159721-126160363+;Right=chr2:126168305-126168966+;Distance=8584;DiscordantMatePairAlignments=349;LeftRepeat=L1MD1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66740069 (chr2:126159717-126168301);Frequency=0.88
chr2	CG	SV	126159721	126160363	349	+	.	ID=4915;Type=deletion;Left=chr2:126159721-126160363;Right=chr2:126168305-126168966
chr2	CG	SV	126168305	126168966	349	+	.	ID=4915;Type=deletion;Left=chr2:126159721-126160363;Right=chr2:126168305-126168966
chr2	CG	SV	127391228	127394463	180	.	.	ID=4914;Type=deletion;Left=chr2:127391228-127391854+;Right=chr2:127393744-127394463+;Distance=2516;DiscordantMatePairAlignments=180;LeftRepeat=;RightRepeat=L1MEd:LINE:L1;LeftGenes=;RightGenes=;XRef=rs74164329 (chr2:127391228-127393744);Frequency=1.00
chr2	CG	SV	127391228	127391854	180	+	.	ID=4914;Type=deletion;Left=chr2:127391228-127391854;Right=chr2:127393744-127394463
chr2	CG	SV	127393744	127394463	180	+	.	ID=4914;Type=deletion;Left=chr2:127391228-127391854;Right=chr2:127393744-127394463
chr2	CG	SV	131603378	131603553	24	.	.	ID=6106;Type=probable-inversion;Left=chr2:131603378-131603712+;Right=chr2:131603388-131603553-;Distance=175;DiscordantMatePairAlignments=24;LeftRepeat=AluSx:SINE:Alu;Self chain;Tandem A;RightRepeat=AluSq:SINE:Alu;Self chain;LeftGenes=NM_001100623:+;NM_017958:+;RightGenes=NM_001100623:+;NM_017958:+;XRef=;Frequency=0.94
chr2	CG	SV	131603378	131603712	24	+	.	ID=6106;Type=probable-inversion;Left=chr2:131603378-131603712;Right=chr2:131603388-131603553
chr2	CG	SV	131603388	131603553	24	+	.	ID=6106;Type=probable-inversion;Left=chr2:131603378-131603712;Right=chr2:131603388-131603553
chr2	CG	SV	132733907	132735956	1248	.	.	ID=4911;Type=deletion;Left=chr2:132733907-132734595+;Right=chr2:132735182-132735956+;Distance=1275;DiscordantMatePairAlignments=1248;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs72407802 (chr2:132733904-132735114);Frequency=1.00
chr2	CG	SV	132733907	132734595	1248	+	.	ID=4911;Type=deletion;Left=chr2:132733907-132734595;Right=chr2:132735182-132735956
chr2	CG	SV	132735182	132735956	1248	+	.	ID=4911;Type=deletion;Left=chr2:132733907-132734595;Right=chr2:132735182-132735956
chr2	CG	SV	132736921	132737544	119	+	.	ID=5625;Type=complex;Left=chr2:132736921-132737544+;Right=chr17:42569498-42569727-;Distance=;DiscordantMatePairAlignments=119;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=0.00
chr17	CG	SV	42569498	42569727	119	+	.	ID=5625;Type=complex;Left=chr2:132736921-132737544+;Right=chr17:42569498-42569727-;Distance=;DiscordantMatePairAlignments=119;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=0.00
chr2	CG	SV	132742748	132747162	172	.	.	ID=2036;Type=complex;Left=chr2:132742748-132743136-;Right=chr2:132746732-132747162-;Distance=4026;DiscordantMatePairAlignments=172;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	132742748	132743136	172	-	.	ID=2036;Type=complex;Left=chr2:132742748-132743136;Right=chr2:132746732-132747162
chr2	CG	SV	132746732	132747162	172	-	.	ID=2036;Type=complex;Left=chr2:132742748-132743136;Right=chr2:132746732-132747162
chr2	CG	SV	132747163	132747594	220	+	.	ID=5636;Type=complex;Left=chr2:132747163-132747594+;Right=chr16:33862766-33863532-;Distance=;DiscordantMatePairAlignments=220;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	33862766	33863532	220	+	.	ID=5636;Type=complex;Left=chr2:132747163-132747594+;Right=chr16:33862766-33863532-;Distance=;DiscordantMatePairAlignments=220;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	133856337	134185500	87	.	.	ID=2034;Type=tandem-duplication;Left=chr2:133856337-133856722-;Right=chr2:134184800-134185500-;Distance=328778;DiscordantMatePairAlignments=87;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_207363:-;NM_207481:-;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	133856337	133856722	87	-	.	ID=2034;Type=tandem-duplication;Left=chr2:133856337-133856722;Right=chr2:134184800-134185500
chr2	CG	SV	134184800	134185500	87	-	.	ID=2034;Type=tandem-duplication;Left=chr2:133856337-133856722;Right=chr2:134184800-134185500
chr2	CG	SV	134683178	134687136	117	.	.	ID=4906;Type=deletion;Left=chr2:134683178-134683704+;Right=chr2:134686608-134687136+;Distance=3430;DiscordantMatePairAlignments=117;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67384749 (chr2:134683187-134686617);Frequency=0.94
chr2	CG	SV	134683178	134683704	117	+	.	ID=4906;Type=deletion;Left=chr2:134683178-134683704;Right=chr2:134686608-134687136
chr2	CG	SV	134686608	134687136	117	+	.	ID=4906;Type=deletion;Left=chr2:134683178-134683704;Right=chr2:134686608-134687136
chr2	CG	SV	141292311	141307175	43	.	.	ID=4905;Type=deletion;Left=chr2:141292311-141292817+;Right=chr2:141306668-141307175+;Distance=14357;DiscordantMatePairAlignments=43;LeftRepeat=;RightRepeat=L1MA4:LINE:L1;LeftGenes=NM_018557:-;RightGenes=NM_018557:-;XRef=;Frequency=0.00
chr2	CG	SV	141292311	141292817	43	+	.	ID=4905;Type=deletion;Left=chr2:141292311-141292817;Right=chr2:141306668-141307175
chr2	CG	SV	141306668	141307175	43	+	.	ID=4905;Type=deletion;Left=chr2:141292311-141292817;Right=chr2:141306668-141307175
chr2	CG	SV	141516602	141791793	93	.	.	ID=4903;Type=complex;Left=chr2:141516602-141517270+;Right=chr2:141791303-141791793+;Distance=274701;DiscordantMatePairAlignments=93;LeftRepeat=LTR40a:LTR:ERVL;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=NM_018557:-;RightGenes=NM_018557:-;XRef=;Frequency=0.00
chr2	CG	SV	141516602	141517270	93	+	.	ID=4903;Type=complex;Left=chr2:141516602-141517270;Right=chr2:141791303-141791793
chr2	CG	SV	141791303	141791793	93	+	.	ID=4903;Type=complex;Left=chr2:141516602-141517270;Right=chr2:141791303-141791793
chr2	CG	SV	141516966	141842885	77	.	.	ID=4900;Type=complex;Left=chr2:141516966-141517558+;Right=chr2:141842341-141842885+;Distance=325375;DiscordantMatePairAlignments=77;LeftRepeat=;RightRepeat=;LeftGenes=NM_018557:-;RightGenes=NM_018557:-;XRef=;Frequency=0.00
chr2	CG	SV	141516966	141517558	77	+	.	ID=4900;Type=complex;Left=chr2:141516966-141517558;Right=chr2:141842341-141842885
chr2	CG	SV	141842341	141842885	77	+	.	ID=4900;Type=complex;Left=chr2:141516966-141517558;Right=chr2:141842341-141842885
chr2	CG	SV	142095481	142359018	26	.	.	ID=4897;Type=deletion;Left=chr2:142095481-142095956+;Right=chr2:142358008-142359018+;Distance=262527;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=;LeftGenes=NM_018557:-;RightGenes=NM_018557:-;XRef=;Frequency=0.00
chr2	CG	SV	142095481	142095956	26	+	.	ID=4897;Type=deletion;Left=chr2:142095481-142095956;Right=chr2:142358008-142359018
chr2	CG	SV	142358008	142359018	26	+	.	ID=4897;Type=deletion;Left=chr2:142095481-142095956;Right=chr2:142358008-142359018
chr2	CG	SV	144043944	144045058	59	.	.	ID=4896;Type=distal-duplication;Left=chr2:144043944-144044470+;Right=chr2:144044480-144045058+;Distance=536;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=;LeftGenes=NM_018460:+;RightGenes=NM_018460:+;XRef=;Frequency=0.00
chr2	CG	SV	144043944	144044470	59	+	.	ID=4896;Type=distal-duplication;Left=chr2:144043944-144044470;Right=chr2:144044480-144045058
chr2	CG	SV	144044480	144045058	59	+	.	ID=4896;Type=distal-duplication;Left=chr2:144043944-144044470;Right=chr2:144044480-144045058
chr2	CG	SV	144043485	144058641	36	.	.	ID=2032;Type=distal-duplication;Left=chr2:144043485-144043948-;Right=chr2:144058068-144058641-;Distance=14693;DiscordantMatePairAlignments=36;LeftRepeat=MIRb:SINE:MIR;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_018460:+;RightGenes=NM_018460:+;XRef=;Frequency=0.00
chr2	CG	SV	144043485	144043948	36	-	.	ID=2032;Type=distal-duplication;Left=chr2:144043485-144043948;Right=chr2:144058068-144058641
chr2	CG	SV	144058068	144058641	36	-	.	ID=2032;Type=distal-duplication;Left=chr2:144043485-144043948;Right=chr2:144058068-144058641
chr2	CG	SV	146579091	146593922	167	.	.	ID=4895;Type=deletion;Left=chr2:146579091-146579807+;Right=chr2:146593334-146593922+;Distance=14243;DiscordantMatePairAlignments=167;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=MLT1H-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr2	CG	SV	146579091	146579807	167	+	.	ID=4895;Type=deletion;Left=chr2:146579091-146579807;Right=chr2:146593334-146593922
chr2	CG	SV	146593334	146593922	167	+	.	ID=4895;Type=deletion;Left=chr2:146579091-146579807;Right=chr2:146593334-146593922
chr2	CG	SV	151611335	151612173	12	.	.	ID=4894;Type=deletion;Left=chr2:151611335-151612036+;Right=chr2:151611611-151612173+;Distance=276;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6146965 (chr2:151611329-151611605);Frequency=1.00
chr2	CG	SV	151611335	151612036	12	+	.	ID=4894;Type=deletion;Left=chr2:151611335-151612036;Right=chr2:151611611-151612173
chr2	CG	SV	151611611	151612173	12	+	.	ID=4894;Type=deletion;Left=chr2:151611335-151612036;Right=chr2:151611611-151612173
chr2	CG	SV	153169001	153170051	10	.	.	ID=874;Type=probable-inversion;Left=chr2:153169001-153169341-;Right=chr2:153169694-153170051+;Distance=353;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=NM_052905:+;RightGenes=NM_052905:+;XRef=;Frequency=0.29
chr2	CG	SV	153169001	153169341	10	-	.	ID=874;Type=probable-inversion;Left=chr2:153169001-153169341;Right=chr2:153169694-153170051
chr2	CG	SV	153169694	153170051	10	-	.	ID=874;Type=probable-inversion;Left=chr2:153169001-153169341;Right=chr2:153169694-153170051
chr2	CG	SV	153504241	153508543	34	.	.	ID=4891;Type=deletion;Left=chr2:153504241-153504759+;Right=chr2:153507989-153508543+;Distance=3748;DiscordantMatePairAlignments=34;LeftRepeat=L1PA14:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr2	CG	SV	153504241	153504759	34	+	.	ID=4891;Type=deletion;Left=chr2:153504241-153504759;Right=chr2:153507989-153508543
chr2	CG	SV	153507989	153508543	34	+	.	ID=4891;Type=deletion;Left=chr2:153504241-153504759;Right=chr2:153507989-153508543
chr2	CG	SV	153753993	153755443	33	.	.	ID=2025;Type=tandem-duplication;Left=chr2:153753993-153754485-;Right=chr2:153754867-153755443-;Distance=958;DiscordantMatePairAlignments=33;LeftRepeat=L1MA4A:LINE:L1;RightRepeat=L1MA4A:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	153753993	153754485	33	-	.	ID=2025;Type=tandem-duplication;Left=chr2:153753993-153754485;Right=chr2:153754867-153755443
chr2	CG	SV	153754867	153755443	33	-	.	ID=2025;Type=tandem-duplication;Left=chr2:153753993-153754485;Right=chr2:153754867-153755443
chr2	CG	SV	159857372	159860597	149	.	.	ID=4889;Type=deletion;Left=chr2:159857372-159858221+;Right=chr2:159859903-159860597+;Distance=2531;DiscordantMatePairAlignments=149;LeftRepeat=L1HS:LINE:L1;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66968272 (chr2:159857372-159859903);Frequency=1.00
chr2	CG	SV	159857372	159858221	149	+	.	ID=4889;Type=deletion;Left=chr2:159857372-159858221;Right=chr2:159859903-159860597
chr2	CG	SV	159859903	159860597	149	+	.	ID=4889;Type=deletion;Left=chr2:159857372-159858221;Right=chr2:159859903-159860597
chr2	CG	SV	161842993	161847428	16	.	.	ID=2023;Type=tandem-duplication;Left=chr2:161842993-161843310-;Right=chr2:161847041-161847428-;Distance=4118;DiscordantMatePairAlignments=16;LeftRepeat=SegDup;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr2	CG	SV	161842993	161843310	16	-	.	ID=2023;Type=tandem-duplication;Left=chr2:161842993-161843310;Right=chr2:161847041-161847428
chr2	CG	SV	161847041	161847428	16	-	.	ID=2023;Type=tandem-duplication;Left=chr2:161842993-161843310;Right=chr2:161847041-161847428
chr2	CG	SV	170349753	170352748	35	.	.	ID=4883;Type=deletion;Left=chr2:170349753-170350462+;Right=chr2:170352197-170352748+;Distance=2444;DiscordantMatePairAlignments=35;LeftRepeat=;RightRepeat=Arthur1:DNA:Tip100;LeftGenes=;RightGenes=;XRef=rs74164351 (chr2:170349764-170352208);Frequency=0.94
chr2	CG	SV	170349753	170350462	35	+	.	ID=4883;Type=deletion;Left=chr2:170349753-170350462;Right=chr2:170352197-170352748
chr2	CG	SV	170352197	170352748	35	+	.	ID=4883;Type=deletion;Left=chr2:170349753-170350462;Right=chr2:170352197-170352748
chr2	CG	SV	176054928	176061534	77	.	.	ID=4882;Type=deletion;Left=chr2:176054928-176055609+;Right=chr2:176060981-176061534+;Distance=6053;DiscordantMatePairAlignments=77;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68056211 (chr2:176054914-176060967);Frequency=0.35
chr2	CG	SV	176054928	176055609	77	+	.	ID=4882;Type=deletion;Left=chr2:176054928-176055609;Right=chr2:176060981-176061534
chr2	CG	SV	176060981	176061534	77	+	.	ID=4882;Type=deletion;Left=chr2:176054928-176055609;Right=chr2:176060981-176061534
chr2	CG	SV	176973891	176980958	61	.	.	ID=4881;Type=deletion;Left=chr2:176973891-176974320+;Right=chr2:176980290-176980958+;Distance=6399;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66861570 (chr2:176973891-176980290);Frequency=0.82
chr2	CG	SV	176973891	176974320	61	+	.	ID=4881;Type=deletion;Left=chr2:176973891-176974320;Right=chr2:176980290-176980958
chr2	CG	SV	176980290	176980958	61	+	.	ID=4881;Type=deletion;Left=chr2:176973891-176974320;Right=chr2:176980290-176980958
chr2	CG	SV	177081925	177094907	121	.	.	ID=6103;Type=complex;Left=chr2:177081925-177082513+;Right=chr2:177094388-177094907-;Distance=12982;DiscordantMatePairAlignments=121;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	177081925	177082513	121	+	.	ID=6103;Type=complex;Left=chr2:177081925-177082513;Right=chr2:177094388-177094907
chr2	CG	SV	177094388	177094907	121	+	.	ID=6103;Type=complex;Left=chr2:177081925-177082513;Right=chr2:177094388-177094907
chr2	CG	SV	177084988	177094883	127	.	.	ID=867;Type=complex;Left=chr2:177084988-177085681-;Right=chr2:177094247-177094883+;Distance=8566;DiscordantMatePairAlignments=127;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	177084988	177085681	127	-	.	ID=867;Type=complex;Left=chr2:177084988-177085681;Right=chr2:177094247-177094883
chr2	CG	SV	177094247	177094883	127	-	.	ID=867;Type=complex;Left=chr2:177084988-177085681;Right=chr2:177094247-177094883
chr2	CG	SV	177995899	177996814	10	.	.	ID=4880;Type=deletion;Left=chr2:177995899-177996466+;Right=chr2:177996377-177996814+;Distance=478;DiscordantMatePairAlignments=10;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_003659:+;RightGenes=NM_003659:+;XRef=rs67480529 (chr2:177995883-177996297);Frequency=1.00
chr2	CG	SV	177995899	177996466	10	+	.	ID=4880;Type=deletion;Left=chr2:177995899-177996466;Right=chr2:177996377-177996814
chr2	CG	SV	177996377	177996814	10	+	.	ID=4880;Type=deletion;Left=chr2:177995899-177996466;Right=chr2:177996377-177996814
chr2	CG	SV	182273509	182274439	10	.	.	ID=4867;Type=deletion;Left=chr2:182273509-182274074+;Right=chr2:182273837-182274439+;Distance=328;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67398526 (chr2:182273485-182273813);Frequency=1.00
chr2	CG	SV	182273509	182274074	10	+	.	ID=4867;Type=deletion;Left=chr2:182273509-182274074;Right=chr2:182273837-182274439
chr2	CG	SV	182273837	182274439	10	+	.	ID=4867;Type=deletion;Left=chr2:182273509-182274074;Right=chr2:182273837-182274439
chr2	CG	SV	182565161	182566447	151	.	.	ID=4866;Type=deletion;Left=chr2:182565161-182565861+;Right=chr2:182565844-182566447+;Distance=683;DiscordantMatePairAlignments=151;LeftRepeat=L3b:LINE:CR1;RightRepeat=;LeftGenes=NM_001080545:+;RightGenes=NM_001080545:+;XRef=;Frequency=0.47
chr2	CG	SV	182565161	182565861	151	+	.	ID=4866;Type=deletion;Left=chr2:182565161-182565861;Right=chr2:182565844-182566447
chr2	CG	SV	182565844	182566447	151	+	.	ID=4866;Type=deletion;Left=chr2:182565161-182565861;Right=chr2:182565844-182566447
chr2	CG	SV	183958226	183958940	14	.	.	ID=4865;Type=deletion;Left=chr2:183958226-183959004+;Right=chr2:183958569-183958940+;Distance=343;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	183958226	183959004	14	+	.	ID=4865;Type=deletion;Left=chr2:183958226-183959004;Right=chr2:183958569-183958940
chr2	CG	SV	183958569	183958940	14	+	.	ID=4865;Type=deletion;Left=chr2:183958226-183959004;Right=chr2:183958569-183958940
chr2	CG	SV	184030015	184031410	65	.	.	ID=4864;Type=deletion;Left=chr2:184030015-184030573+;Right=chr2:184030887-184031410+;Distance=872;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	184030015	184030573	65	+	.	ID=4864;Type=deletion;Left=chr2:184030015-184030573;Right=chr2:184030887-184031410
chr2	CG	SV	184030887	184031410	65	+	.	ID=4864;Type=deletion;Left=chr2:184030015-184030573;Right=chr2:184030887-184031410
chr2	CG	SV	188827864	188829748	138	.	.	ID=4863;Type=deletion;Left=chr2:188827864-188828425+;Right=chr2:188829227-188829748+;Distance=1363;DiscordantMatePairAlignments=138;LeftRepeat=L1ME1:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr2	CG	SV	188827864	188828425	138	+	.	ID=4863;Type=deletion;Left=chr2:188827864-188828425;Right=chr2:188829227-188829748
chr2	CG	SV	188829227	188829748	138	+	.	ID=4863;Type=deletion;Left=chr2:188827864-188828425;Right=chr2:188829227-188829748
chr2	CG	SV	194397747	194407572	13	.	.	ID=4862;Type=deletion;Left=chr2:194397747-194398276+;Right=chr2:194407011-194407572+;Distance=9264;DiscordantMatePairAlignments=13;LeftRepeat=HAL1:LINE:L1;RightRepeat=L1PA5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67932712 (chr2:194397747-194407011);Frequency=0.88
chr2	CG	SV	194397747	194398276	13	+	.	ID=4862;Type=deletion;Left=chr2:194397747-194398276;Right=chr2:194407011-194407572
chr2	CG	SV	194407011	194407572	13	+	.	ID=4862;Type=deletion;Left=chr2:194397747-194398276;Right=chr2:194407011-194407572
chr2	CG	SV	195923061	195924062	32	.	.	ID=4861;Type=deletion;Left=chr2:195923061-195923659+;Right=chr2:195923473-195924062+;Distance=412;DiscordantMatePairAlignments=32;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67052058 (chr2:195923059-195923471);Frequency=0.94
chr2	CG	SV	195923061	195923659	32	+	.	ID=4861;Type=deletion;Left=chr2:195923061-195923659;Right=chr2:195923473-195924062
chr2	CG	SV	195923473	195924062	32	+	.	ID=4861;Type=deletion;Left=chr2:195923061-195923659;Right=chr2:195923473-195924062
chr2	CG	SV	201854893	201858379	62	.	.	ID=4859;Type=deletion;Left=chr2:201854893-201855349+;Right=chr2:201857685-201858379+;Distance=2792;DiscordantMatePairAlignments=62;LeftRepeat=;RightRepeat=;LeftGenes=NM_001080124:+;NM_001080125:+;NM_001228:+;NM_033355:+;NM_033356:+;RightGenes=NM_001080124:+;NM_001080125:+;NM_001228:+;NM_033355:+;NM_033356:+;XRef=rs66663250 (chr2:201854893-201857685);Frequency=0.71
chr2	CG	SV	201854893	201855349	62	+	.	ID=4859;Type=deletion;Left=chr2:201854893-201855349;Right=chr2:201857685-201858379
chr2	CG	SV	201857685	201858379	62	+	.	ID=4859;Type=deletion;Left=chr2:201854893-201855349;Right=chr2:201857685-201858379
chr2	CG	SV	206439444	206440271	17	.	.	ID=4857;Type=deletion;Left=chr2:206439444-206440176+;Right=chr2:206439767-206440271+;Distance=323;DiscordantMatePairAlignments=17;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	206439444	206440176	17	+	.	ID=4857;Type=deletion;Left=chr2:206439444-206440176;Right=chr2:206439767-206440271
chr2	CG	SV	206439767	206440271	17	+	.	ID=4857;Type=deletion;Left=chr2:206439444-206440176;Right=chr2:206439767-206440271
chr2	CG	SV	208798530	208806209	58	.	.	ID=4854;Type=deletion;Left=chr2:208798530-208799113+;Right=chr2:208805687-208806209+;Distance=7157;DiscordantMatePairAlignments=58;LeftRepeat=AluSq:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	208798530	208799113	58	+	.	ID=4854;Type=deletion;Left=chr2:208798530-208799113;Right=chr2:208805687-208806209
chr2	CG	SV	208805687	208806209	58	+	.	ID=4854;Type=deletion;Left=chr2:208798530-208799113;Right=chr2:208805687-208806209
chr2	CG	SV	212489917	212536446	75	.	.	ID=4851;Type=deletion;Left=chr2:212489917-212490410+;Right=chr2:212535912-212536446+;Distance=45995;DiscordantMatePairAlignments=75;LeftRepeat=;RightRepeat=;LeftGenes=NM_001042599:-;NM_005235:-;RightGenes=NM_001042599:-;NM_005235:-;XRef=;Frequency=0.00
chr2	CG	SV	212489917	212490410	75	+	.	ID=4851;Type=deletion;Left=chr2:212489917-212490410;Right=chr2:212535912-212536446
chr2	CG	SV	212535912	212536446	75	+	.	ID=4851;Type=deletion;Left=chr2:212489917-212490410;Right=chr2:212535912-212536446
chr2	CG	SV	212793182	212933181	54	.	.	ID=4849;Type=deletion;Left=chr2:212793182-212793792+;Right=chr2:212932647-212933181+;Distance=139465;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=;LeftGenes=NM_001042599:-;NM_005235:-;RightGenes=NM_001042599:-;NM_005235:-;XRef=;Frequency=0.00
chr2	CG	SV	212793182	212793792	54	+	.	ID=4849;Type=deletion;Left=chr2:212793182-212793792;Right=chr2:212932647-212933181
chr2	CG	SV	212932647	212933181	54	+	.	ID=4849;Type=deletion;Left=chr2:212793182-212793792;Right=chr2:212932647-212933181
chr2	CG	SV	216798177	216801008	122	.	.	ID=4847;Type=deletion;Left=chr2:216798177-216798900+;Right=chr2:216800745-216801008+;Distance=2568;DiscordantMatePairAlignments=122;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr2	CG	SV	216798177	216798900	122	+	.	ID=4847;Type=deletion;Left=chr2:216798177-216798900;Right=chr2:216800745-216801008
chr2	CG	SV	216800745	216801008	122	+	.	ID=4847;Type=deletion;Left=chr2:216798177-216798900;Right=chr2:216800745-216801008
chr2	CG	SV	219760799	219764829	55	.	.	ID=4845;Type=deletion;Left=chr2:219760799-219761389+;Right=chr2:219764472-219764829+;Distance=3673;DiscordantMatePairAlignments=55;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	219760799	219761389	55	+	.	ID=4845;Type=deletion;Left=chr2:219760799-219761389;Right=chr2:219764472-219764829
chr2	CG	SV	219764472	219764829	55	+	.	ID=4845;Type=deletion;Left=chr2:219760799-219761389;Right=chr2:219764472-219764829
chr2	CG	SV	221793995	221798423	116	.	.	ID=4843;Type=deletion;Left=chr2:221793995-221794365+;Right=chr2:221797856-221798423+;Distance=3861;DiscordantMatePairAlignments=116;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	221793995	221794365	116	+	.	ID=4843;Type=deletion;Left=chr2:221793995-221794365;Right=chr2:221797856-221798423
chr2	CG	SV	221797856	221798423	116	+	.	ID=4843;Type=deletion;Left=chr2:221793995-221794365;Right=chr2:221797856-221798423
chr2	CG	SV	223468429	223471512	81	.	.	ID=4842;Type=deletion;Left=chr2:223468429-223469070+;Right=chr2:223470922-223471512+;Distance=2493;DiscordantMatePairAlignments=81;LeftRepeat=;RightRepeat=;LeftGenes=NM_004457:+;NM_203372:+;RightGenes=NM_004457:+;NM_203372:+;XRef=rs67796571 (chr2:223468435-223470928);Frequency=0.94
chr2	CG	SV	223468429	223469070	81	+	.	ID=4842;Type=deletion;Left=chr2:223468429-223469070;Right=chr2:223470922-223471512
chr2	CG	SV	223470922	223471512	81	+	.	ID=4842;Type=deletion;Left=chr2:223468429-223469070;Right=chr2:223470922-223471512
chr2	CG	SV	225747827	225748881	32	.	.	ID=4840;Type=deletion;Left=chr2:225747827-225748437+;Right=chr2:225748304-225748881+;Distance=477;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;RightRepeat=Alu:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr2	CG	SV	225747827	225748437	32	+	.	ID=4840;Type=deletion;Left=chr2:225747827-225748437;Right=chr2:225748304-225748881
chr2	CG	SV	225748304	225748881	32	+	.	ID=4840;Type=deletion;Left=chr2:225747827-225748437;Right=chr2:225748304-225748881
chr2	CG	SV	226873670	226879890	57	.	.	ID=4839;Type=deletion;Left=chr2:226873670-226874052+;Right=chr2:226879415-226879890+;Distance=5745;DiscordantMatePairAlignments=57;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72094991 (chr2:226873668-226879413);Frequency=0.65
chr2	CG	SV	226873670	226874052	57	+	.	ID=4839;Type=deletion;Left=chr2:226873670-226874052;Right=chr2:226879415-226879890
chr2	CG	SV	226879415	226879890	57	+	.	ID=4839;Type=deletion;Left=chr2:226873670-226874052;Right=chr2:226879415-226879890
chr2	CG	SV	237596582	237612670	146	.	.	ID=4830;Type=deletion;Left=chr2:237596582-237597154+;Right=chr2:237611957-237612670+;Distance=15375;DiscordantMatePairAlignments=146;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	237596582	237597154	146	+	.	ID=4830;Type=deletion;Left=chr2:237596582-237597154;Right=chr2:237611957-237612670
chr2	CG	SV	237611957	237612670	146	+	.	ID=4830;Type=deletion;Left=chr2:237596582-237597154;Right=chr2:237611957-237612670
chr2	CG	SV	239655533	239656756	37	.	.	ID=4828;Type=deletion;Left=chr2:239655533-239655857+;Right=chr2:239656464-239656756+;Distance=931;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;Tandem period 49;RightRepeat=Self chain;Tandem period 49;LeftGenes=NM_006037:-;RightGenes=NM_006037:-;XRef=;Frequency=0.29
chr2	CG	SV	239655533	239655857	37	+	.	ID=4828;Type=deletion;Left=chr2:239655533-239655857;Right=chr2:239656464-239656756
chr2	CG	SV	239656464	239656756	37	+	.	ID=4828;Type=deletion;Left=chr2:239655533-239655857;Right=chr2:239656464-239656756
chr2	CG	SV	240288764	240311596	62	.	.	ID=2022;Type=tandem-duplication;Left=chr2:240288764-240289311-;Right=chr2:240311185-240311596-;Distance=22285;DiscordantMatePairAlignments=62;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	240288764	240289311	62	-	.	ID=2022;Type=tandem-duplication;Left=chr2:240288764-240289311;Right=chr2:240311185-240311596
chr2	CG	SV	240311185	240311596	62	-	.	ID=2022;Type=tandem-duplication;Left=chr2:240288764-240289311;Right=chr2:240311185-240311596
chr2	CG	SV	240607627	240608664	11	.	.	ID=4826;Type=deletion;Left=chr2:240607627-240608195+;Right=chr2:240607949-240608664+;Distance=322;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_004544:-;RightGenes=NM_004544:-;XRef=rs10705194 (chr2:240607627-240607949);Frequency=0.82
chr2	CG	SV	240607627	240608195	11	+	.	ID=4826;Type=deletion;Left=chr2:240607627-240608195;Right=chr2:240607949-240608664
chr2	CG	SV	240607949	240608664	11	+	.	ID=4826;Type=deletion;Left=chr2:240607627-240608195;Right=chr2:240607949-240608664
chr2	CG	SV	240630052	240631331	53	.	.	ID=4825;Type=deletion;Left=chr2:240630052-240630542+;Right=chr2:240630710-240631331+;Distance=658;DiscordantMatePairAlignments=53;LeftRepeat=Self chain;Tandem period 14;RightRepeat=Self chain;Tandem period 14;Tandem period 56;Tandem period 84;LeftGenes=NM_001080835:-;RightGenes=NM_001080835:-;XRef=;Frequency=0.59
chr2	CG	SV	240630052	240630542	53	+	.	ID=4825;Type=deletion;Left=chr2:240630052-240630542;Right=chr2:240630710-240631331
chr2	CG	SV	240630710	240631331	53	+	.	ID=4825;Type=deletion;Left=chr2:240630052-240630542;Right=chr2:240630710-240631331
chr2	CG	SV	241114999	241115873	10	.	.	ID=2021;Type=tandem-duplication;Left=chr2:241114999-241115304-;Right=chr2:241115541-241115873-;Distance=569;DiscordantMatePairAlignments=10;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=NM_016552:-;NM_017844:-;RightGenes=NM_016552:-;NM_017844:-;XRef=;Frequency=0.88
chr2	CG	SV	241114999	241115304	10	-	.	ID=2021;Type=tandem-duplication;Left=chr2:241114999-241115304;Right=chr2:241115541-241115873
chr2	CG	SV	241115541	241115873	10	-	.	ID=2021;Type=tandem-duplication;Left=chr2:241114999-241115304;Right=chr2:241115541-241115873
chr2	CG	SV	242154776	242156540	38	.	.	ID=4820;Type=deletion;Left=chr2:242154776-242155218+;Right=chr2:242156007-242156540+;Distance=1231;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=L1MB5:LINE:L1;Self chain;LeftGenes=NM_032515:+;RightGenes=NM_032515:+;XRef=rs72482950 (chr2:242154674-242155799);Frequency=0.45
chr2	CG	SV	242154776	242155218	38	+	.	ID=4820;Type=deletion;Left=chr2:242154776-242155218;Right=chr2:242156007-242156540
chr2	CG	SV	242156007	242156540	38	+	.	ID=4820;Type=deletion;Left=chr2:242154776-242155218;Right=chr2:242156007-242156540
chr3	CG	SV	34838	75359579	11	.	.	ID=2018;Type=complex;Left=chr3:34838-35095-;Right=chr3:75359371-75359579-;Distance=75324484;DiscordantMatePairAlignments=11;LeftRepeat=SegDup;Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr3	CG	SV	34838	35095	11	-	.	ID=2018;Type=complex;Left=chr3:34838-35095;Right=chr3:75359371-75359579
chr3	CG	SV	75359371	75359579	11	-	.	ID=2018;Type=complex;Left=chr3:34838-35095;Right=chr3:75359371-75359579
chr3	CG	SV	1191389	1192449	96	.	.	ID=2020;Type=tandem-duplication;Left=chr3:1191389-1191890-;Right=chr3:1191941-1192449-;Distance=559;DiscordantMatePairAlignments=96;LeftRepeat=AluJb:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=NM_014461:+;RightGenes=NM_014461:+;XRef=;Frequency=0.12
chr3	CG	SV	1191389	1191890	96	-	.	ID=2020;Type=tandem-duplication;Left=chr3:1191389-1191890;Right=chr3:1191941-1192449
chr3	CG	SV	1191941	1192449	96	-	.	ID=2020;Type=tandem-duplication;Left=chr3:1191389-1191890;Right=chr3:1191941-1192449
chr3	CG	SV	2908507	3274706	54	.	.	ID=4816;Type=deletion;Left=chr3:2908507-2909163+;Right=chr3:3274238-3274706+;Distance=365731;DiscordantMatePairAlignments=54;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_175607:+;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	2908507	2909163	54	+	.	ID=4816;Type=deletion;Left=chr3:2908507-2909163;Right=chr3:3274238-3274706
chr3	CG	SV	3274238	3274706	54	+	.	ID=4816;Type=deletion;Left=chr3:2908507-2909163;Right=chr3:3274238-3274706
chr3	CG	SV	8300639	8302408	202	.	.	ID=4811;Type=deletion;Left=chr3:8300639-8301245+;Right=chr3:8301812-8302408+;Distance=1173;DiscordantMatePairAlignments=202;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71052654 (chr3:8300639-8301812);Frequency=0.59
chr3	CG	SV	8300639	8301245	202	+	.	ID=4811;Type=deletion;Left=chr3:8300639-8301245;Right=chr3:8301812-8302408
chr3	CG	SV	8301812	8302408	202	+	.	ID=4811;Type=deletion;Left=chr3:8300639-8301245;Right=chr3:8301812-8302408
chr3	CG	SV	8428565	8429699	27	.	.	ID=4810;Type=deletion;Left=chr3:8428565-8428949+;Right=chr3:8429416-8429699+;Distance=851;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;Tandem period 50;RightRepeat=L2:LINE:L2;Self chain;Tandem period 50;LeftGenes=;RightGenes=;XRef=rs71052655 (chr3:8428509-8429110);Frequency=0.29
chr3	CG	SV	8428565	8428949	27	+	.	ID=4810;Type=deletion;Left=chr3:8428565-8428949;Right=chr3:8429416-8429699
chr3	CG	SV	8429416	8429699	27	+	.	ID=4810;Type=deletion;Left=chr3:8428565-8428949;Right=chr3:8429416-8429699
chr3	CG	SV	8848916	37107563	63	.	.	ID=865;Type=probable-inversion;Left=chr3:8848916-8849562-;Right=chr3:37106868-37107563+;Distance=28257306;DiscordantMatePairAlignments=63;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=NM_001134369:-;NM_006309:-;NM_017724:-;XRef=;Frequency=0.00
chr3	CG	SV	8848916	8849562	63	-	.	ID=865;Type=probable-inversion;Left=chr3:8848916-8849562;Right=chr3:37106868-37107563
chr3	CG	SV	37106868	37107563	63	-	.	ID=865;Type=probable-inversion;Left=chr3:8848916-8849562;Right=chr3:37106868-37107563
chr3	CG	SV	8874930	37199905	74	.	.	ID=6101;Type=probable-inversion;Left=chr3:8874930-8875585+;Right=chr3:37199361-37199905-;Distance=28324975;DiscordantMatePairAlignments=74;LeftRepeat=ERVL-B2:LTR:ERVL;RightRepeat=MLT1K:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	8874930	8875585	74	+	.	ID=6101;Type=probable-inversion;Left=chr3:8874930-8875585;Right=chr3:37199361-37199905
chr3	CG	SV	37199361	37199905	74	+	.	ID=6101;Type=probable-inversion;Left=chr3:8874930-8875585;Right=chr3:37199361-37199905
chr3	CG	SV	10372475	10373322	19	.	.	ID=4803;Type=deletion;Left=chr3:10372475-10373138+;Right=chr3:10372844-10373322+;Distance=369;DiscordantMatePairAlignments=19;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TG;LeftGenes=NM_001001331:-;NM_001683:-;RightGenes=NM_001001331:-;NM_001683:-;XRef=;Frequency=1.00
chr3	CG	SV	10372475	10373138	19	+	.	ID=4803;Type=deletion;Left=chr3:10372475-10373138;Right=chr3:10372844-10373322
chr3	CG	SV	10372844	10373322	19	+	.	ID=4803;Type=deletion;Left=chr3:10372475-10373138;Right=chr3:10372844-10373322
chr3	CG	SV	15820177	15822217	73	.	.	ID=4796;Type=deletion;Left=chr3:15820177-15820819+;Right=chr3:15821743-15822217+;Distance=1566;DiscordantMatePairAlignments=73;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_015199:-;RightGenes=NM_015199:-;XRef=;Frequency=0.18
chr3	CG	SV	15820177	15820819	73	+	.	ID=4796;Type=deletion;Left=chr3:15820177-15820819;Right=chr3:15821743-15822217
chr3	CG	SV	15821743	15822217	73	+	.	ID=4796;Type=deletion;Left=chr3:15820177-15820819;Right=chr3:15821743-15822217
chr3	CG	SV	20286732	20293356	14	.	.	ID=4793;Type=deletion;Left=chr3:20286732-20287434+;Right=chr3:20292945-20293356+;Distance=6213;DiscordantMatePairAlignments=14;LeftRepeat=HERV9:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr3	CG	SV	20286732	20287434	14	+	.	ID=4793;Type=deletion;Left=chr3:20286732-20287434;Right=chr3:20292945-20293356
chr3	CG	SV	20292945	20293356	14	+	.	ID=4793;Type=deletion;Left=chr3:20286732-20287434;Right=chr3:20292945-20293356
chr3	CG	SV	22067354	22073531	161	.	.	ID=4790;Type=deletion;Left=chr3:22067354-22068000+;Right=chr3:22072802-22073531+;Distance=5448;DiscordantMatePairAlignments=161;LeftRepeat=L1HS:LINE:L1;RightRepeat=L1HS:LINE:L1;Tandem A;LeftGenes=;RightGenes=;XRef=rs66720172 (chr3:22067351-22072799);Frequency=0.88
chr3	CG	SV	22067354	22068000	161	+	.	ID=4790;Type=deletion;Left=chr3:22067354-22068000;Right=chr3:22072802-22073531
chr3	CG	SV	22072802	22073531	161	+	.	ID=4790;Type=deletion;Left=chr3:22067354-22068000;Right=chr3:22072802-22073531
chr3	CG	SV	25005891	25007813	130	.	.	ID=4787;Type=deletion;Left=chr3:25005891-25006557+;Right=chr3:25007253-25007813+;Distance=1362;DiscordantMatePairAlignments=130;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=L1ME3B:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72404999 (chr3:25005891-25007246);Frequency=0.65
chr3	CG	SV	25005891	25006557	130	+	.	ID=4787;Type=deletion;Left=chr3:25005891-25006557;Right=chr3:25007253-25007813
chr3	CG	SV	25007253	25007813	130	+	.	ID=4787;Type=deletion;Left=chr3:25005891-25006557;Right=chr3:25007253-25007813
chr3	CG	SV	26425974	26427908	283	.	.	ID=4785;Type=deletion;Left=chr3:26425974-26426684+;Right=chr3:26427303-26427908+;Distance=1329;DiscordantMatePairAlignments=283;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66805914 (chr3:26425974-26427303);Frequency=0.94
chr3	CG	SV	26425974	26426684	283	+	.	ID=4785;Type=deletion;Left=chr3:26425974-26426684;Right=chr3:26427303-26427908
chr3	CG	SV	26427303	26427908	283	+	.	ID=4785;Type=deletion;Left=chr3:26425974-26426684;Right=chr3:26427303-26427908
chr3	CG	SV	30472559	30474195	15	.	.	ID=6096;Type=probable-inversion;Left=chr3:30472559-30473059+;Right=chr3:30474059-30474195-;Distance=1636;DiscordantMatePairAlignments=15;LeftRepeat=MLT1K:LTR:MaLR;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	30472559	30473059	15	+	.	ID=6096;Type=probable-inversion;Left=chr3:30472559-30473059;Right=chr3:30474059-30474195
chr3	CG	SV	30474059	30474195	15	+	.	ID=6096;Type=probable-inversion;Left=chr3:30472559-30473059;Right=chr3:30474059-30474195
chr3	CG	SV	32077056	32083568	124	.	.	ID=4784;Type=deletion;Left=chr3:32077056-32077611+;Right=chr3:32082889-32083568+;Distance=5833;DiscordantMatePairAlignments=124;LeftRepeat=;RightRepeat=MER31B:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs67265896 (chr3:32077056-32082889);Frequency=0.94
chr3	CG	SV	32077056	32077611	124	+	.	ID=4784;Type=deletion;Left=chr3:32077056-32077611;Right=chr3:32082889-32083568
chr3	CG	SV	32082889	32083568	124	+	.	ID=4784;Type=deletion;Left=chr3:32077056-32077611;Right=chr3:32082889-32083568
chr3	CG	SV	32781815	32783486	138	.	.	ID=4781;Type=deletion;Left=chr3:32781815-32782455+;Right=chr3:32783132-32783486+;Distance=1317;DiscordantMatePairAlignments=138;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_015442:+;RightGenes=NM_015442:+;XRef=rs71052665 (chr3:32781767-32783082);Frequency=0.94
chr3	CG	SV	32781815	32782455	138	+	.	ID=4781;Type=deletion;Left=chr3:32781815-32782455;Right=chr3:32783132-32783486
chr3	CG	SV	32783132	32783486	138	+	.	ID=4781;Type=deletion;Left=chr3:32781815-32782455;Right=chr3:32783132-32783486
chr3	CG	SV	33528211	33529716	65	.	.	ID=4779;Type=deletion;Left=chr3:33528211-33528711+;Right=chr3:33529067-33529716+;Distance=856;DiscordantMatePairAlignments=65;LeftRepeat=L1HS:LINE:L1;RightRepeat=Tandem A;LeftGenes=NM_015097:-;RightGenes=NM_015097:-;XRef=;Frequency=0.82
chr3	CG	SV	33528211	33528711	65	+	.	ID=4779;Type=deletion;Left=chr3:33528211-33528711;Right=chr3:33529067-33529716
chr3	CG	SV	33529067	33529716	65	+	.	ID=4779;Type=deletion;Left=chr3:33528211-33528711;Right=chr3:33529067-33529716
chr3	CG	SV	33697288	33697890	16	.	.	ID=2012;Type=tandem-duplication;Left=chr3:33697288-33697589-;Right=chr3:33697665-33697890-;Distance=301;DiscordantMatePairAlignments=16;LeftRepeat=AluSg:SINE:Alu;RightRepeat=;LeftGenes=NM_015097:-;RightGenes=NM_015097:-;XRef=;Frequency=0.47
chr3	CG	SV	33697288	33697589	16	-	.	ID=2012;Type=tandem-duplication;Left=chr3:33697288-33697589;Right=chr3:33697665-33697890
chr3	CG	SV	33697665	33697890	16	-	.	ID=2012;Type=tandem-duplication;Left=chr3:33697288-33697589;Right=chr3:33697665-33697890
chr3	CG	SV	41159179	41203932	126	.	.	ID=2011;Type=tandem-duplication;Left=chr3:41159179-41159818-;Right=chr3:41203420-41203932-;Distance=44114;DiscordantMatePairAlignments=126;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	41159179	41159818	126	-	.	ID=2011;Type=tandem-duplication;Left=chr3:41159179-41159818;Right=chr3:41203420-41203932
chr3	CG	SV	41203420	41203932	126	-	.	ID=2011;Type=tandem-duplication;Left=chr3:41159179-41159818;Right=chr3:41203420-41203932
chr3	CG	SV	42813377	42816500	112	.	.	ID=4772;Type=deletion;Left=chr3:42813377-42813993+;Right=chr3:42815831-42816500+;Distance=2454;DiscordantMatePairAlignments=112;LeftRepeat=;RightRepeat=LTR8:LTR:ERV1;LeftGenes=NM_001099668:-;NM_001099669:-;NM_014056:-;RightGenes=NM_001099668:-;NM_001099669:-;NM_014056:-;XRef=rs71052669 (chr3:42813377-42815831);Frequency=1.00
chr3	CG	SV	42813377	42813993	112	+	.	ID=4772;Type=deletion;Left=chr3:42813377-42813993;Right=chr3:42815831-42816500
chr3	CG	SV	42815831	42816500	112	+	.	ID=4772;Type=deletion;Left=chr3:42813377-42813993;Right=chr3:42815831-42816500
chr3	CG	SV	43006110	43007119	16	.	.	ID=4770;Type=deletion;Left=chr3:43006110-43006789+;Right=chr3:43006438-43007119+;Distance=328;DiscordantMatePairAlignments=16;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_001129908:+;RightGenes=NM_001129908:+;XRef=rs10522179 (chr3:43006110-43006438);Frequency=1.00
chr3	CG	SV	43006110	43006789	16	+	.	ID=4770;Type=deletion;Left=chr3:43006110-43006789;Right=chr3:43006438-43007119
chr3	CG	SV	43006438	43007119	16	+	.	ID=4770;Type=deletion;Left=chr3:43006110-43006789;Right=chr3:43006438-43007119
chr3	CG	SV	44715291	44717510	63	.	.	ID=855;Type=distal-duplication;Left=chr3:44715291-44715994-;Right=chr3:44717289-44717510+;Distance=1295;DiscordantMatePairAlignments=63;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	44715291	44715994	63	-	.	ID=855;Type=distal-duplication;Left=chr3:44715291-44715994;Right=chr3:44717289-44717510
chr3	CG	SV	44717289	44717510	63	-	.	ID=855;Type=distal-duplication;Left=chr3:44715291-44715994;Right=chr3:44717289-44717510
chr3	CG	SV	44716161	44717125	84	.	.	ID=6094;Type=distal-duplication;Left=chr3:44716161-44716486+;Right=chr3:44716631-44717125-;Distance=964;DiscordantMatePairAlignments=84;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	44716161	44716486	84	+	.	ID=6094;Type=distal-duplication;Left=chr3:44716161-44716486;Right=chr3:44716631-44717125
chr3	CG	SV	44716631	44717125	84	+	.	ID=6094;Type=distal-duplication;Left=chr3:44716161-44716486;Right=chr3:44716631-44717125
chr3	CG	SV	45584924	45585983	83	.	.	ID=4767;Type=deletion;Left=chr3:45584924-45585647+;Right=chr3:45585340-45585983+;Distance=416;DiscordantMatePairAlignments=83;LeftRepeat=L1PA14:LINE:L1;RightRepeat=L1PA14:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66706080 (chr3:45584811-45585223);Frequency=1.00
chr3	CG	SV	45584924	45585647	83	+	.	ID=4767;Type=deletion;Left=chr3:45584924-45585647;Right=chr3:45585340-45585983
chr3	CG	SV	45585340	45585983	83	+	.	ID=4767;Type=deletion;Left=chr3:45584924-45585647;Right=chr3:45585340-45585983
chr3	CG	SV	47465673	47469275	106	.	.	ID=4765;Type=deletion;Left=chr3:47465673-47466228+;Right=chr3:47468446-47469275+;Distance=2773;DiscordantMatePairAlignments=106;LeftRepeat=L1MD2:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=NM_012235:-;RightGenes=NM_012235:-;XRef=rs71996089 (chr3:47465671-47468444);Frequency=0.47
chr3	CG	SV	47465673	47466228	106	+	.	ID=4765;Type=deletion;Left=chr3:47465673-47466228;Right=chr3:47468446-47469275
chr3	CG	SV	47468446	47469275	106	+	.	ID=4765;Type=deletion;Left=chr3:47465673-47466228;Right=chr3:47468446-47469275
chr3	CG	SV	49469291	49470034	13	.	.	ID=4760;Type=deletion;Left=chr3:49469291-49469870+;Right=chr3:49469620-49470034+;Distance=329;DiscordantMatePairAlignments=13;LeftRepeat=MIRb:SINE:MIR;Tandem T;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	49469291	49469870	13	+	.	ID=4760;Type=deletion;Left=chr3:49469291-49469870;Right=chr3:49469620-49470034
chr3	CG	SV	49469620	49470034	13	+	.	ID=4760;Type=deletion;Left=chr3:49469291-49469870;Right=chr3:49469620-49470034
chr3	CG	SV	59791166	60398725	64	.	.	ID=4748;Type=deletion;Left=chr3:59791166-59791765+;Right=chr3:60398110-60398725+;Distance=606944;DiscordantMatePairAlignments=64;LeftRepeat=;RightRepeat=;LeftGenes=NM_001166243:-;NM_002012:-;RightGenes=NM_001166243:-;NM_002012:-;XRef=;Frequency=0.00
chr3	CG	SV	59791166	59791765	64	+	.	ID=4748;Type=deletion;Left=chr3:59791166-59791765;Right=chr3:60398110-60398725
chr3	CG	SV	60398110	60398725	64	+	.	ID=4748;Type=deletion;Left=chr3:59791166-59791765;Right=chr3:60398110-60398725
chr3	CG	SV	59937929	60127589	104	.	.	ID=2010;Type=tandem-duplication;Left=chr3:59937929-59938455-;Right=chr3:60127006-60127589-;Distance=189134;DiscordantMatePairAlignments=104;LeftRepeat=;RightRepeat=;LeftGenes=NM_001166243:-;NM_002012:-;RightGenes=NM_001166243:-;NM_002012:-;XRef=;Frequency=0.00
chr3	CG	SV	59937929	59938455	104	-	.	ID=2010;Type=tandem-duplication;Left=chr3:59937929-59938455;Right=chr3:60127006-60127589
chr3	CG	SV	60127006	60127589	104	-	.	ID=2010;Type=tandem-duplication;Left=chr3:59937929-59938455;Right=chr3:60127006-60127589
chr3	CG	SV	60883299	60940514	89	.	.	ID=4744;Type=deletion;Left=chr3:60883299-60883977+;Right=chr3:60939556-60940514+;Distance=56257;DiscordantMatePairAlignments=89;LeftRepeat=;RightRepeat=;LeftGenes=NM_001166243:-;NM_002012:-;RightGenes=NM_001166243:-;NM_002012:-;XRef=;Frequency=0.00
chr3	CG	SV	60883299	60883977	89	+	.	ID=4744;Type=deletion;Left=chr3:60883299-60883977;Right=chr3:60939556-60940514
chr3	CG	SV	60939556	60940514	89	+	.	ID=4744;Type=deletion;Left=chr3:60883299-60883977;Right=chr3:60939556-60940514
chr3	CG	SV	63109897	63110953	31	.	.	ID=4743;Type=deletion;Left=chr3:63109897-63110456+;Right=chr3:63110350-63110953+;Distance=453;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs68090124 (chr3:63109897-63110350);Frequency=0.00
chr3	CG	SV	63109897	63110456	31	+	.	ID=4743;Type=deletion;Left=chr3:63109897-63110456;Right=chr3:63110350-63110953
chr3	CG	SV	63110350	63110953	31	+	.	ID=4743;Type=deletion;Left=chr3:63109897-63110456;Right=chr3:63110350-63110953
chr3	CG	SV	65092943	65095239	54	.	.	ID=4742;Type=deletion;Left=chr3:65092943-65093560+;Right=chr3:65094815-65095239+;Distance=1872;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr3	CG	SV	65092943	65093560	54	+	.	ID=4742;Type=deletion;Left=chr3:65092943-65093560;Right=chr3:65094815-65095239
chr3	CG	SV	65094815	65095239	54	+	.	ID=4742;Type=deletion;Left=chr3:65092943-65093560;Right=chr3:65094815-65095239
chr3	CG	SV	66034402	66035591	131	.	.	ID=2008;Type=tandem-duplication;Left=chr3:66034402-66034984-;Right=chr3:66035253-66035591-;Distance=607;DiscordantMatePairAlignments=131;LeftRepeat=Alu:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr3	CG	SV	66034402	66034984	131	-	.	ID=2008;Type=tandem-duplication;Left=chr3:66034402-66034984;Right=chr3:66035253-66035591
chr3	CG	SV	66035253	66035591	131	-	.	ID=2008;Type=tandem-duplication;Left=chr3:66034402-66034984;Right=chr3:66035253-66035591
chr3	CG	SV	67576397	67580155	82	.	.	ID=4741;Type=deletion;Left=chr3:67576397-67576901+;Right=chr3:67579501-67580155+;Distance=3104;DiscordantMatePairAlignments=82;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_003848:-;RightGenes=NM_003848:-;XRef=rs71052690 (chr3:67576398-67579502);Frequency=1.00
chr3	CG	SV	67576397	67576901	82	+	.	ID=4741;Type=deletion;Left=chr3:67576397-67576901;Right=chr3:67579501-67580155
chr3	CG	SV	67579501	67580155	82	+	.	ID=4741;Type=deletion;Left=chr3:67576397-67576901;Right=chr3:67579501-67580155
chr3	CG	SV	68822380	68831181	30	.	.	ID=4739;Type=deletion;Left=chr3:68822380-68822860+;Right=chr3:68830555-68831181+;Distance=8175;DiscordantMatePairAlignments=30;LeftRepeat=AluJo:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67150556 (chr3:68822377-68830553);Frequency=0.88
chr3	CG	SV	68822380	68822860	30	+	.	ID=4739;Type=deletion;Left=chr3:68822380-68822860;Right=chr3:68830555-68831181
chr3	CG	SV	68830555	68831181	30	+	.	ID=4739;Type=deletion;Left=chr3:68822380-68822860;Right=chr3:68830555-68831181
chr3	CG	SV	73145767	73146700	20	.	.	ID=4737;Type=deletion;Left=chr3:73145767-73146359+;Right=chr3:73146244-73146700+;Distance=477;DiscordantMatePairAlignments=20;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluJo:SINE:Alu;LeftGenes=NM_174907:+;RightGenes=NM_174907:+;XRef=rs71988935 (chr3:73145767-73146244);Frequency=0.59
chr3	CG	SV	73145767	73146359	20	+	.	ID=4737;Type=deletion;Left=chr3:73145767-73146359;Right=chr3:73146244-73146700
chr3	CG	SV	73146244	73146700	20	+	.	ID=4737;Type=deletion;Left=chr3:73145767-73146359;Right=chr3:73146244-73146700
chr3	CG	SV	75359579	75361909	77	.	.	ID=4736;Type=complex;Left=chr3:75359579-75360189+;Right=chr3:75361608-75361909+;Distance=2029;DiscordantMatePairAlignments=77;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72396976 (chr3:75359579-75361608);Frequency=1.00
chr3	CG	SV	75359579	75360189	77	+	.	ID=4736;Type=complex;Left=chr3:75359579-75360189;Right=chr3:75361608-75361909
chr3	CG	SV	75361608	75361909	77	+	.	ID=4736;Type=complex;Left=chr3:75359579-75360189;Right=chr3:75361608-75361909
chr3	CG	SV	75779325	75780239	19	.	.	ID=4733;Type=deletion;Left=chr3:75779325-75780050+;Right=chr3:75779546-75780239+;Distance=221;DiscordantMatePairAlignments=19;LeftRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;RightRepeat=BSR/Beta:Satellite:Satellite;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	75779325	75780050	19	+	.	ID=4733;Type=deletion;Left=chr3:75779325-75780050;Right=chr3:75779546-75780239
chr3	CG	SV	75779546	75780239	19	+	.	ID=4733;Type=deletion;Left=chr3:75779325-75780050;Right=chr3:75779546-75780239
chr3	CG	SV	76097051	76097427	29	.	.	ID=2005;Type=tandem-duplication;Left=chr3:76097051-76097246-;Right=chr3:76097295-76097427-;Distance=181;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	76097051	76097246	29	-	.	ID=2005;Type=tandem-duplication;Left=chr3:76097051-76097246;Right=chr3:76097295-76097427
chr3	CG	SV	76097295	76097427	29	-	.	ID=2005;Type=tandem-duplication;Left=chr3:76097051-76097246;Right=chr3:76097295-76097427
chr3	CG	SV	76724461	76754050	33	.	.	ID=4731;Type=deletion;Left=chr3:76724461-76725068+;Right=chr3:76753800-76754050+;Distance=29339;DiscordantMatePairAlignments=33;LeftRepeat=MLT1E2:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	76724461	76725068	33	+	.	ID=4731;Type=deletion;Left=chr3:76724461-76725068;Right=chr3:76753800-76754050
chr3	CG	SV	76753800	76754050	33	+	.	ID=4731;Type=deletion;Left=chr3:76724461-76725068;Right=chr3:76753800-76754050
chr3	CG	SV	76862196	76863325	16	.	.	ID=4730;Type=deletion;Left=chr3:76862196-76862621+;Right=chr3:76862896-76863325+;Distance=700;DiscordantMatePairAlignments=16;LeftRepeat=Tandem period 28;RightRepeat=Tandem period 28;LeftGenes=;RightGenes=;XRef=rs72171909 (chr3:76862015-76862575);Frequency=0.82
chr3	CG	SV	76862196	76862621	16	+	.	ID=4730;Type=deletion;Left=chr3:76862196-76862621;Right=chr3:76862896-76863325
chr3	CG	SV	76862896	76863325	16	+	.	ID=4730;Type=deletion;Left=chr3:76862196-76862621;Right=chr3:76862896-76863325
chr3	CG	SV	76901816	76970188	174	.	.	ID=4729;Type=deletion;Left=chr3:76901816-76902463+;Right=chr3:76969495-76970188+;Distance=67679;DiscordantMatePairAlignments=174;LeftRepeat=;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	76901816	76902463	174	+	.	ID=4729;Type=deletion;Left=chr3:76901816-76902463;Right=chr3:76969495-76970188
chr3	CG	SV	76969495	76970188	174	+	.	ID=4729;Type=deletion;Left=chr3:76901816-76902463;Right=chr3:76969495-76970188
chr3	CG	SV	77322425	77326140	63	.	.	ID=4727;Type=deletion;Left=chr3:77322425-77322965+;Right=chr3:77325575-77326140+;Distance=3150;DiscordantMatePairAlignments=63;LeftRepeat=;RightRepeat=;LeftGenes=NM_001128929:+;NM_002942:+;RightGenes=NM_001128929:+;NM_002942:+;XRef=;Frequency=0.00
chr3	CG	SV	77322425	77322965	63	+	.	ID=4727;Type=deletion;Left=chr3:77322425-77322965;Right=chr3:77325575-77326140
chr3	CG	SV	77325575	77326140	63	+	.	ID=4727;Type=deletion;Left=chr3:77322425-77322965;Right=chr3:77325575-77326140
chr3	CG	SV	81008004	81009869	192	.	.	ID=4725;Type=deletion;Left=chr3:81008004-81008469+;Right=chr3:81009297-81009869+;Distance=1293;DiscordantMatePairAlignments=192;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71052702 (chr3:81008004-81009297);Frequency=0.88
chr3	CG	SV	81008004	81008469	192	+	.	ID=4725;Type=deletion;Left=chr3:81008004-81008469;Right=chr3:81009297-81009869
chr3	CG	SV	81009297	81009869	192	+	.	ID=4725;Type=deletion;Left=chr3:81008004-81008469;Right=chr3:81009297-81009869
chr3	CG	SV	83935805	83938542	136	.	.	ID=4724;Type=deletion;Left=chr3:83935805-83936331+;Right=chr3:83938039-83938542+;Distance=2234;DiscordantMatePairAlignments=136;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67708183 (chr3:83935805-83938039);Frequency=0.94
chr3	CG	SV	83935805	83936331	136	+	.	ID=4724;Type=deletion;Left=chr3:83935805-83936331;Right=chr3:83938039-83938542
chr3	CG	SV	83938039	83938542	136	+	.	ID=4724;Type=deletion;Left=chr3:83935805-83936331;Right=chr3:83938039-83938542
chr3	CG	SV	84187632	84190639	164	.	.	ID=4723;Type=deletion;Left=chr3:84187632-84188248+;Right=chr3:84190074-84190639+;Distance=2442;DiscordantMatePairAlignments=164;LeftRepeat=L1MC1:LINE:L1;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr3	CG	SV	84187632	84188248	164	+	.	ID=4723;Type=deletion;Left=chr3:84187632-84188248;Right=chr3:84190074-84190639
chr3	CG	SV	84190074	84190639	164	+	.	ID=4723;Type=deletion;Left=chr3:84187632-84188248;Right=chr3:84190074-84190639
chr3	CG	SV	84620292	84628664	38	.	.	ID=2004;Type=tandem-duplication;Left=chr3:84620292-84620803-;Right=chr3:84628084-84628664-;Distance=7861;DiscordantMatePairAlignments=38;LeftRepeat=L1MB1:LINE:L1;RightRepeat=L1MC2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	84620292	84620803	38	-	.	ID=2004;Type=tandem-duplication;Left=chr3:84620292-84620803;Right=chr3:84628084-84628664
chr3	CG	SV	84628084	84628664	38	-	.	ID=2004;Type=tandem-duplication;Left=chr3:84620292-84620803;Right=chr3:84628084-84628664
chr3	CG	SV	85257840	85261144	39	.	.	ID=4722;Type=deletion;Left=chr3:85257840-85258266+;Right=chr3:85260586-85261144+;Distance=2746;DiscordantMatePairAlignments=39;LeftRepeat=;RightRepeat=;LeftGenes=NM_001167674:+;NM_001167675:+;RightGenes=NM_001167674:+;NM_001167675:+;XRef=;Frequency=0.00
chr3	CG	SV	85257840	85258266	39	+	.	ID=4722;Type=deletion;Left=chr3:85257840-85258266;Right=chr3:85260586-85261144
chr3	CG	SV	85260586	85261144	39	+	.	ID=4722;Type=deletion;Left=chr3:85257840-85258266;Right=chr3:85260586-85261144
chr3	CG	SV	98113460	98213706	20	.	.	ID=4718;Type=deletion;Left=chr3:98113460-98113911+;Right=chr3:98213330-98213706+;Distance=99870;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=L1PA16:LINE:L1;Self chain;LeftGenes=NM_001080448:+;RightGenes=NM_001080448:+;XRef=;Frequency=0.00
chr3	CG	SV	98113460	98113911	20	+	.	ID=4718;Type=deletion;Left=chr3:98113460-98113911;Right=chr3:98213330-98213706
chr3	CG	SV	98213330	98213706	20	+	.	ID=4718;Type=deletion;Left=chr3:98113460-98113911;Right=chr3:98213330-98213706
chr3	CG	SV	99893356	99897772	24	.	.	ID=4716;Type=deletion;Left=chr3:99893356-99893815+;Right=chr3:99897173-99897772+;Distance=3817;DiscordantMatePairAlignments=24;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr3	CG	SV	99893356	99893815	24	+	.	ID=4716;Type=deletion;Left=chr3:99893356-99893815;Right=chr3:99897173-99897772
chr3	CG	SV	99897173	99897772	24	+	.	ID=4716;Type=deletion;Left=chr3:99893356-99893815;Right=chr3:99897173-99897772
chr3	CG	SV	100426496	100432782	32	.	.	ID=4714;Type=deletion;Left=chr3:100426496-100426957+;Right=chr3:100432208-100432782+;Distance=5712;DiscordantMatePairAlignments=32;LeftRepeat=;RightRepeat=L1PA15:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr3	CG	SV	100426496	100426957	32	+	.	ID=4714;Type=deletion;Left=chr3:100426496-100426957;Right=chr3:100432208-100432782
chr3	CG	SV	100432208	100432782	32	+	.	ID=4714;Type=deletion;Left=chr3:100426496-100426957;Right=chr3:100432208-100432782
chr3	CG	SV	101111472	101112851	309	.	.	ID=4713;Type=deletion;Left=chr3:101111472-101112095+;Right=chr3:101112321-101112851+;Distance=849;DiscordantMatePairAlignments=309;LeftRepeat=;RightRepeat=;LeftGenes=NM_001042459:-;NM_032359:+;NM_182909:-;RightGenes=NM_001042459:-;NM_032359:+;NM_182909:-;XRef=rs68054323 (chr3:101111472-101112320);Frequency=0.47
chr3	CG	SV	101111472	101112095	309	+	.	ID=4713;Type=deletion;Left=chr3:101111472-101112095;Right=chr3:101112321-101112851
chr3	CG	SV	101112321	101112851	309	+	.	ID=4713;Type=deletion;Left=chr3:101111472-101112095;Right=chr3:101112321-101112851
chr3	CG	SV	103766477	103767515	15	.	.	ID=4711;Type=deletion;Left=chr3:103766477-103767125+;Right=chr3:103766815-103767515+;Distance=338;DiscordantMatePairAlignments=15;LeftRepeat=Tandem T;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67864955 (chr3:103766477-103766815);Frequency=0.76
chr3	CG	SV	103766477	103767125	15	+	.	ID=4711;Type=deletion;Left=chr3:103766477-103767125;Right=chr3:103766815-103767515
chr3	CG	SV	103766815	103767515	15	+	.	ID=4711;Type=deletion;Left=chr3:103766477-103767125;Right=chr3:103766815-103767515
chr3	CG	SV	105760890	105762338	20	.	.	ID=4710;Type=deletion;Left=chr3:105760890-105761403+;Right=chr3:105761737-105762338+;Distance=847;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67066218 (chr3:105760889-105761736);Frequency=0.41
chr3	CG	SV	105760890	105761403	20	+	.	ID=4710;Type=deletion;Left=chr3:105760890-105761403;Right=chr3:105761737-105762338
chr3	CG	SV	105761737	105762338	20	+	.	ID=4710;Type=deletion;Left=chr3:105760890-105761403;Right=chr3:105761737-105762338
chr3	CG	SV	106558358	106561386	95	.	.	ID=4709;Type=deletion;Left=chr3:106558358-106559004+;Right=chr3:106560683-106561386+;Distance=2325;DiscordantMatePairAlignments=95;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr3	CG	SV	106558358	106559004	95	+	.	ID=4709;Type=deletion;Left=chr3:106558358-106559004;Right=chr3:106560683-106561386
chr3	CG	SV	106560683	106561386	95	+	.	ID=4709;Type=deletion;Left=chr3:106558358-106559004;Right=chr3:106560683-106561386
chr3	CG	SV	106788697	106794419	38	.	.	ID=4708;Type=deletion;Left=chr3:106788697-106789212+;Right=chr3:106793732-106794419+;Distance=5035;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr3	CG	SV	106788697	106789212	38	+	.	ID=4708;Type=deletion;Left=chr3:106788697-106789212;Right=chr3:106793732-106794419
chr3	CG	SV	106793732	106794419	38	+	.	ID=4708;Type=deletion;Left=chr3:106788697-106789212;Right=chr3:106793732-106794419
chr3	CG	SV	107311550	107314905	107	.	.	ID=4707;Type=deletion;Left=chr3:107311550-107312106+;Right=chr3:107314317-107314905+;Distance=2767;DiscordantMatePairAlignments=107;LeftRepeat=MLT1A0:LTR:MaLR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr3	CG	SV	107311550	107312106	107	+	.	ID=4707;Type=deletion;Left=chr3:107311550-107312106;Right=chr3:107314317-107314905
chr3	CG	SV	107314317	107314905	107	+	.	ID=4707;Type=deletion;Left=chr3:107311550-107312106;Right=chr3:107314317-107314905
chr3	CG	SV	113950091	113951029	10	.	.	ID=4704;Type=deletion;Left=chr3:113950091-113950753+;Right=chr3:113950421-113951029+;Distance=330;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10528219 (chr3:113950072-113950402);Frequency=1.00
chr3	CG	SV	113950091	113950753	10	+	.	ID=4704;Type=deletion;Left=chr3:113950091-113950753;Right=chr3:113950421-113951029
chr3	CG	SV	113950421	113951029	10	+	.	ID=4704;Type=deletion;Left=chr3:113950091-113950753;Right=chr3:113950421-113951029
chr3	CG	SV	114280944	114281021	25	-	.	ID=568;Type=complex;Left=chr3:114280944-114281021-;Right=chr16:87318514-87319224+;Distance=;DiscordantMatePairAlignments=25;LeftRepeat=;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=;RightGenes=NM_001142864:-;XRef=;Frequency=0.00
chr16	CG	SV	87318514	87319224	25	-	.	ID=568;Type=complex;Left=chr3:114280944-114281021-;Right=chr16:87318514-87319224+;Distance=;DiscordantMatePairAlignments=25;LeftRepeat=;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=;RightGenes=NM_001142864:-;XRef=;Frequency=0.00
chr3	CG	SV	114281099	114473354	19	.	.	ID=6088;Type=complex;Left=chr3:114281099-114281180+;Right=chr3:114472746-114473354-;Distance=192255;DiscordantMatePairAlignments=19;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_033254:+;XRef=;Frequency=0.00
chr3	CG	SV	114281099	114281180	19	+	.	ID=6088;Type=complex;Left=chr3:114281099-114281180;Right=chr3:114472746-114473354
chr3	CG	SV	114472746	114473354	19	+	.	ID=6088;Type=complex;Left=chr3:114281099-114281180;Right=chr3:114472746-114473354
chr3	CG	SV	114280591	114473750	111	.	.	ID=851;Type=complex;Left=chr3:114280591-114281108-;Right=chr3:114473371-114473750+;Distance=192263;DiscordantMatePairAlignments=111;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_033254:+;XRef=;Frequency=0.00
chr3	CG	SV	114280591	114281108	111	-	.	ID=851;Type=complex;Left=chr3:114280591-114281108;Right=chr3:114473371-114473750
chr3	CG	SV	114473371	114473750	111	-	.	ID=851;Type=complex;Left=chr3:114280591-114281108;Right=chr3:114473371-114473750
chr3	CG	SV	114473362	114473833	61	+	.	ID=4346;Type=complex;Left=chr3:114473362-114473833+;Right=chr16:87318511-87319065+;Distance=;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_033254:+;RightGenes=NM_001142864:-;XRef=;Frequency=0.00
chr16	CG	SV	87318511	87319065	61	+	.	ID=4346;Type=complex;Left=chr3:114473362-114473833+;Right=chr16:87318511-87319065+;Distance=;DiscordantMatePairAlignments=61;LeftRepeat=;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_033254:+;RightGenes=NM_001142864:-;XRef=;Frequency=0.00
chr3	CG	SV	115578945	115585571	13	.	.	ID=850;Type=complex;Left=chr3:115578945-115579032-;Right=chr3:115584975-115585571+;Distance=5943;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_001164342:-;NM_001164343:-;NM_001164344:-;NM_001164345:-;NM_001164346:-;NM_001164347:-;NM_015642:-;RightGenes=NM_001164342:-;NM_001164343:-;NM_001164344:-;NM_001164345:-;NM_001164346:-;NM_001164347:-;NM_015642:-;XRef=;Frequency=0.00
chr3	CG	SV	115578945	115579032	13	-	.	ID=850;Type=complex;Left=chr3:115578945-115579032;Right=chr3:115584975-115585571
chr3	CG	SV	115584975	115585571	13	-	.	ID=850;Type=complex;Left=chr3:115578945-115579032;Right=chr3:115584975-115585571
chr3	CG	SV	115579124	115582247	16	.	.	ID=6087;Type=complex;Left=chr3:115579124-115579205+;Right=chr3:115581488-115582247-;Distance=3123;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001164342:-;NM_001164343:-;NM_001164344:-;NM_001164345:-;NM_001164346:-;NM_001164347:-;NM_015642:-;RightGenes=NM_001164342:-;NM_001164343:-;NM_001164344:-;NM_001164345:-;NM_001164346:-;NM_001164347:-;NM_015642:-;XRef=;Frequency=0.00
chr3	CG	SV	115579124	115579205	16	+	.	ID=6087;Type=complex;Left=chr3:115579124-115579205;Right=chr3:115581488-115582247
chr3	CG	SV	115581488	115582247	16	+	.	ID=6087;Type=complex;Left=chr3:115579124-115579205;Right=chr3:115581488-115582247
chr3	CG	SV	115582255	115585464	104	.	.	ID=4703;Type=complex;Left=chr3:115582255-115583008+;Right=chr3:115584973-115585464+;Distance=2718;DiscordantMatePairAlignments=104;LeftRepeat=Self chain;RightRepeat=;LeftGenes=NM_001164342:-;NM_001164343:-;NM_001164344:-;NM_001164345:-;NM_001164346:-;NM_001164347:-;NM_015642:-;RightGenes=NM_001164342:-;NM_001164343:-;NM_001164344:-;NM_001164345:-;NM_001164346:-;NM_001164347:-;NM_015642:-;XRef=;Frequency=0.00
chr3	CG	SV	115582255	115583008	104	+	.	ID=4703;Type=complex;Left=chr3:115582255-115583008;Right=chr3:115584973-115585464
chr3	CG	SV	115584973	115585464	104	+	.	ID=4703;Type=complex;Left=chr3:115582255-115583008;Right=chr3:115584973-115585464
chr3	CG	SV	117837589	117931958	92	.	.	ID=4699;Type=deletion;Left=chr3:117837589-117838070+;Right=chr3:117931363-117931958+;Distance=93774;DiscordantMatePairAlignments=92;LeftRepeat=MER20:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	117837589	117838070	92	+	.	ID=4699;Type=deletion;Left=chr3:117837589-117838070;Right=chr3:117931363-117931958
chr3	CG	SV	117931363	117931958	92	+	.	ID=4699;Type=deletion;Left=chr3:117837589-117838070;Right=chr3:117931363-117931958
chr3	CG	SV	117955761	117997098	74	.	.	ID=4698;Type=deletion;Left=chr3:117955761-117956319+;Right=chr3:117996544-117997098+;Distance=40783;DiscordantMatePairAlignments=74;LeftRepeat=L2:LINE:L2;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	117955761	117956319	74	+	.	ID=4698;Type=deletion;Left=chr3:117955761-117956319;Right=chr3:117996544-117997098
chr3	CG	SV	117996544	117997098	74	+	.	ID=4698;Type=deletion;Left=chr3:117955761-117956319;Right=chr3:117996544-117997098
chr3	CG	SV	118128716	118278392	13	.	.	ID=4696;Type=deletion;Left=chr3:118128716-118129227+;Right=chr3:118277792-118278392+;Distance=149076;DiscordantMatePairAlignments=13;LeftRepeat=L1PA7:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	118128716	118129227	13	+	.	ID=4696;Type=deletion;Left=chr3:118128716-118129227;Right=chr3:118277792-118278392
chr3	CG	SV	118277792	118278392	13	+	.	ID=4696;Type=deletion;Left=chr3:118128716-118129227;Right=chr3:118277792-118278392
chr3	CG	SV	121376675	121377785	84	.	.	ID=4695;Type=deletion;Left=chr3:121376675-121377250+;Right=chr3:121377135-121377785+;Distance=460;DiscordantMatePairAlignments=84;LeftRepeat=;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=NM_001168271:-;NM_153002:-;RightGenes=NM_001168271:-;NM_153002:-;XRef=rs67310162 (chr3:121376675-121377135);Frequency=1.00
chr3	CG	SV	121376675	121377250	84	+	.	ID=4695;Type=deletion;Left=chr3:121376675-121377250;Right=chr3:121377135-121377785
chr3	CG	SV	121377135	121377785	84	+	.	ID=4695;Type=deletion;Left=chr3:121376675-121377250;Right=chr3:121377135-121377785
chr3	CG	SV	126372743	126374178	102	.	.	ID=4691;Type=deletion;Left=chr3:126372743-126373030+;Right=chr3:126373513-126374178+;Distance=770;DiscordantMatePairAlignments=102;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_024628:-;RightGenes=NM_024628:-;XRef=rs66464009 (chr3:126372743-126373513);Frequency=1.00
chr3	CG	SV	126372743	126373030	102	+	.	ID=4691;Type=deletion;Left=chr3:126372743-126373030;Right=chr3:126373513-126374178
chr3	CG	SV	126373513	126374178	102	+	.	ID=4691;Type=deletion;Left=chr3:126372743-126373030;Right=chr3:126373513-126374178
chr3	CG	SV	126418990	126420437	67	.	.	ID=4690;Type=deletion;Left=chr3:126418990-126419227+;Right=chr3:126419859-126420437+;Distance=869;DiscordantMatePairAlignments=67;LeftRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72308239 (chr3:126418985-126419853);Frequency=0.82
chr3	CG	SV	126418990	126419227	67	+	.	ID=4690;Type=deletion;Left=chr3:126418990-126419227;Right=chr3:126419859-126420437
chr3	CG	SV	126419859	126420437	67	+	.	ID=4690;Type=deletion;Left=chr3:126418990-126419227;Right=chr3:126419859-126420437
chr3	CG	SV	131830267	131836329	75	.	.	ID=4686;Type=deletion;Left=chr3:131830267-131830741+;Right=chr3:131835809-131836329+;Distance=5542;DiscordantMatePairAlignments=75;LeftRepeat=;RightRepeat=;LeftGenes=NM_001102608:+;RightGenes=NM_001102608:+;XRef=rs72337912 (chr3:131830267-131835809);Frequency=0.35
chr3	CG	SV	131830267	131830741	75	+	.	ID=4686;Type=deletion;Left=chr3:131830267-131830741;Right=chr3:131835809-131836329
chr3	CG	SV	131835809	131836329	75	+	.	ID=4686;Type=deletion;Left=chr3:131830267-131830741;Right=chr3:131835809-131836329
chr3	CG	SV	133190943	133196538	51	.	.	ID=4684;Type=deletion;Left=chr3:133190943-133191371+;Right=chr3:133196074-133196538+;Distance=5131;DiscordantMatePairAlignments=51;LeftRepeat=;RightRepeat=;LeftGenes=NM_130808:-;RightGenes=NM_130808:-;XRef=;Frequency=0.59
chr3	CG	SV	133190943	133191371	51	+	.	ID=4684;Type=deletion;Left=chr3:133190943-133191371;Right=chr3:133196074-133196538
chr3	CG	SV	133196074	133196538	51	+	.	ID=4684;Type=deletion;Left=chr3:133190943-133191371;Right=chr3:133196074-133196538
chr3	CG	SV	133471886	133478383	52	.	.	ID=4683;Type=deletion;Left=chr3:133471886-133472324+;Right=chr3:133477843-133478383+;Distance=5957;DiscordantMatePairAlignments=52;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67599226 (chr3:133471815-133477774);Frequency=0.41
chr3	CG	SV	133471886	133472324	52	+	.	ID=4683;Type=deletion;Left=chr3:133471886-133472324;Right=chr3:133477843-133478383
chr3	CG	SV	133477843	133478383	52	+	.	ID=4683;Type=deletion;Left=chr3:133471886-133472324;Right=chr3:133477843-133478383
chr3	CG	SV	134986466	134988380	155	.	.	ID=4681;Type=deletion;Left=chr3:134986466-134987070+;Right=chr3:134987782-134988380+;Distance=1316;DiscordantMatePairAlignments=155;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71056134 (chr3:134986472-134987788);Frequency=0.53
chr3	CG	SV	134986466	134987070	155	+	.	ID=4681;Type=deletion;Left=chr3:134986466-134987070;Right=chr3:134987782-134988380
chr3	CG	SV	134987782	134988380	155	+	.	ID=4681;Type=deletion;Left=chr3:134986466-134987070;Right=chr3:134987782-134988380
chr3	CG	SV	136156597	136157914	198	.	.	ID=4676;Type=deletion;Left=chr3:136156597-136157413+;Right=chr3:136157250-136157914+;Distance=653;DiscordantMatePairAlignments=198;LeftRepeat=;RightRepeat=;LeftGenes=NM_004441:+;RightGenes=NM_004441:+;XRef=rs68037545 (chr3:136156592-136157245);Frequency=0.82
chr3	CG	SV	136156597	136157413	198	+	.	ID=4676;Type=deletion;Left=chr3:136156597-136157413;Right=chr3:136157250-136157914
chr3	CG	SV	136157250	136157914	198	+	.	ID=4676;Type=deletion;Left=chr3:136156597-136157413;Right=chr3:136157250-136157914
chr3	CG	SV	137503703	137509228	38	.	.	ID=4675;Type=deletion;Left=chr3:137503703-137504224+;Right=chr3:137508889-137509228+;Distance=5186;DiscordantMatePairAlignments=38;LeftRepeat=L1M4c:LINE:L1;RightRepeat=L1MC4a:LINE:L1;LeftGenes=NM_000532:+;RightGenes=NM_000532:+;XRef=rs72454215 (chr3:137503704-137508889);Frequency=0.76
chr3	CG	SV	137503703	137504224	38	+	.	ID=4675;Type=deletion;Left=chr3:137503703-137504224;Right=chr3:137508889-137509228
chr3	CG	SV	137508889	137509228	38	+	.	ID=4675;Type=deletion;Left=chr3:137503703-137504224;Right=chr3:137508889-137509228
chr3	CG	SV	141153403	141157732	14	.	.	ID=4673;Type=deletion;Left=chr3:141153403-141153519+;Right=chr3:141157144-141157732+;Distance=3741;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=;LeftGenes=NM_022131:+;RightGenes=NM_022131:+;XRef=;Frequency=1.00
chr3	CG	SV	141153403	141153519	14	+	.	ID=4673;Type=deletion;Left=chr3:141153403-141153519;Right=chr3:141157144-141157732
chr3	CG	SV	141157144	141157732	14	+	.	ID=4673;Type=deletion;Left=chr3:141153403-141153519;Right=chr3:141157144-141157732
chr3	CG	SV	142103521	142105048	51	.	.	ID=2001;Type=tandem-duplication;Left=chr3:142103521-142103797-;Right=chr3:142104505-142105048-;Distance=1251;DiscordantMatePairAlignments=51;LeftRepeat=Self chain;RightRepeat=Tigger3b:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr3	CG	SV	142103521	142103797	51	-	.	ID=2001;Type=tandem-duplication;Left=chr3:142103521-142103797;Right=chr3:142104505-142105048
chr3	CG	SV	142104505	142105048	51	-	.	ID=2001;Type=tandem-duplication;Left=chr3:142103521-142103797;Right=chr3:142104505-142105048
chr3	CG	SV	143846756	145059367	59	.	.	ID=2000;Type=tandem-duplication;Left=chr3:143846756-143847257-;Right=chr3:145058906-145059367-;Distance=1212110;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=L1PB2:LINE:L1;LeftGenes=NM_001145319:+;NM_002670:+;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	143846756	143847257	59	-	.	ID=2000;Type=tandem-duplication;Left=chr3:143846756-143847257;Right=chr3:145058906-145059367
chr3	CG	SV	145058906	145059367	59	-	.	ID=2000;Type=tandem-duplication;Left=chr3:143846756-143847257;Right=chr3:145058906-145059367
chr3	CG	SV	147867880	147877861	51	.	.	ID=4670;Type=complex;Left=chr3:147867880-147868373+;Right=chr3:147877553-147877861+;Distance=9673;DiscordantMatePairAlignments=51;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs72156653 (chr3:147867880-147877553);Frequency=0.94
chr3	CG	SV	147867880	147868373	51	+	.	ID=4670;Type=complex;Left=chr3:147867880-147868373;Right=chr3:147877553-147877861
chr3	CG	SV	147877553	147877861	51	+	.	ID=4670;Type=complex;Left=chr3:147867880-147868373;Right=chr3:147877553-147877861
chr3	CG	SV	147867880	147873429	50	.	.	ID=4671;Type=complex;Left=chr3:147867880-147868132+;Right=chr3:147873094-147873429+;Distance=5214;DiscordantMatePairAlignments=50;LeftRepeat=L2:LINE:L2;RightRepeat=L1PA16:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	147867880	147868132	50	+	.	ID=4671;Type=complex;Left=chr3:147867880-147868132;Right=chr3:147873094-147873429
chr3	CG	SV	147873094	147873429	50	+	.	ID=4671;Type=complex;Left=chr3:147867880-147868132;Right=chr3:147873094-147873429
chr3	CG	SV	147872391	147877855	56	.	.	ID=1999;Type=complex;Left=chr3:147872391-147873094-;Right=chr3:147877550-147877855-;Distance=4761;DiscordantMatePairAlignments=56;LeftRepeat=L1PA16:LINE:L1;RightRepeat=THE1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	147872391	147873094	56	-	.	ID=1999;Type=complex;Left=chr3:147872391-147873094;Right=chr3:147877550-147877855
chr3	CG	SV	147877550	147877855	56	-	.	ID=1999;Type=complex;Left=chr3:147872391-147873094;Right=chr3:147877550-147877855
chr3	CG	SV	149764130	149768707	40	.	.	ID=4669;Type=deletion;Left=chr3:149764130-149764496+;Right=chr3:149768115-149768707+;Distance=3985;DiscordantMatePairAlignments=40;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67645862 (chr3:149764124-149768109);Frequency=0.71
chr3	CG	SV	149764130	149764496	40	+	.	ID=4669;Type=deletion;Left=chr3:149764130-149764496;Right=chr3:149768115-149768707
chr3	CG	SV	149768115	149768707	40	+	.	ID=4669;Type=deletion;Left=chr3:149764130-149764496;Right=chr3:149768115-149768707
chr3	CG	SV	150049492	150050484	13	.	.	ID=4668;Type=deletion;Left=chr3:150049492-150049999+;Right=chr3:150049810-150050484+;Distance=318;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001871:+;RightGenes=NM_001871:+;XRef=rs10705315 (chr3:150049492-150049810);Frequency=1.00
chr3	CG	SV	150049492	150049999	13	+	.	ID=4668;Type=deletion;Left=chr3:150049492-150049999;Right=chr3:150049810-150050484
chr3	CG	SV	150049810	150050484	13	+	.	ID=4668;Type=deletion;Left=chr3:150049492-150049999;Right=chr3:150049810-150050484
chr3	CG	SV	150446060	150452887	76	.	.	ID=4666;Type=deletion;Left=chr3:150446060-150446531+;Right=chr3:150452398-150452887+;Distance=6338;DiscordantMatePairAlignments=76;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr3	CG	SV	150446060	150446531	76	+	.	ID=4666;Type=deletion;Left=chr3:150446060-150446531;Right=chr3:150452398-150452887
chr3	CG	SV	150452398	150452887	76	+	.	ID=4666;Type=deletion;Left=chr3:150446060-150446531;Right=chr3:150452398-150452887
chr3	CG	SV	150751166	150753497	86	.	.	ID=4665;Type=deletion;Left=chr3:150751166-150751739+;Right=chr3:150752841-150753497+;Distance=1675;DiscordantMatePairAlignments=86;LeftRepeat=;RightRepeat=;LeftGenes=NM_001168278:-;NM_001168280:-;NM_015472:-;RightGenes=NM_001168278:-;NM_001168280:-;NM_015472:-;XRef=rs67511215 (chr3:150751166-150752841);Frequency=0.35
chr3	CG	SV	150751166	150751739	86	+	.	ID=4665;Type=deletion;Left=chr3:150751166-150751739;Right=chr3:150752841-150753497
chr3	CG	SV	150752841	150753497	86	+	.	ID=4665;Type=deletion;Left=chr3:150751166-150751739;Right=chr3:150752841-150753497
chr3	CG	SV	153794418	153796283	117	.	.	ID=4662;Type=deletion;Left=chr3:153794418-153795147+;Right=chr3:153795850-153796283+;Distance=1432;DiscordantMatePairAlignments=117;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67110903 (chr3:153794413-153795845);Frequency=1.00
chr3	CG	SV	153794418	153795147	117	+	.	ID=4662;Type=deletion;Left=chr3:153794418-153795147;Right=chr3:153795850-153796283
chr3	CG	SV	153795850	153796283	117	+	.	ID=4662;Type=deletion;Left=chr3:153794418-153795147;Right=chr3:153795850-153796283
chr3	CG	SV	159833434	159835038	16	.	.	ID=4660;Type=deletion;Left=chr3:159833434-159834210+;Right=chr3:159834606-159835038+;Distance=1172;DiscordantMatePairAlignments=16;LeftRepeat=Charlie3:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71056148 (chr3:159833434-159834606);Frequency=0.53
chr3	CG	SV	159833434	159834210	16	+	.	ID=4660;Type=deletion;Left=chr3:159833434-159834210;Right=chr3:159834606-159835038
chr3	CG	SV	159834606	159835038	16	+	.	ID=4660;Type=deletion;Left=chr3:159833434-159834210;Right=chr3:159834606-159835038
chr3	CG	SV	160278483	160279142	18	.	.	ID=846;Type=distal-duplication;Left=chr3:160278483-160278568-;Right=chr3:160278610-160279142+;Distance=42;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=;LeftGenes=NM_001042705:+;NM_001042706:+;RightGenes=NM_001042705:+;NM_001042706:+;XRef=;Frequency=0.35
chr3	CG	SV	160278483	160278568	18	-	.	ID=846;Type=distal-duplication;Left=chr3:160278483-160278568;Right=chr3:160278610-160279142
chr3	CG	SV	160278610	160279142	18	-	.	ID=846;Type=distal-duplication;Left=chr3:160278483-160278568;Right=chr3:160278610-160279142
chr3	CG	SV	160278607	160278650	39	.	.	ID=6084;Type=distal-duplication;Left=chr3:160278607-160279233+;Right=chr3:160278564-160278650-;Distance=43;DiscordantMatePairAlignments=39;LeftRepeat=;RightRepeat=;LeftGenes=NM_001042705:+;NM_001042706:+;RightGenes=NM_001042705:+;NM_001042706:+;XRef=;Frequency=0.35
chr3	CG	SV	160278607	160279233	39	+	.	ID=6084;Type=distal-duplication;Left=chr3:160278607-160279233;Right=chr3:160278564-160278650
chr3	CG	SV	160278564	160278650	39	+	.	ID=6084;Type=distal-duplication;Left=chr3:160278607-160279233;Right=chr3:160278564-160278650
chr3	CG	SV	164008436	164030335	260	.	.	ID=6083;Type=complex;Left=chr3:164008436-164008994+;Right=chr3:164029727-164030335-;Distance=21899;DiscordantMatePairAlignments=260;LeftRepeat=MIR:SINE:MIR;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr3	CG	SV	164008436	164008994	260	+	.	ID=6083;Type=complex;Left=chr3:164008436-164008994;Right=chr3:164029727-164030335
chr3	CG	SV	164029727	164030335	260	+	.	ID=6083;Type=complex;Left=chr3:164008436-164008994;Right=chr3:164029727-164030335
chr3	CG	SV	164027502	164030759	102	.	.	ID=845;Type=complex;Left=chr3:164027502-164028056-;Right=chr3:164030352-164030759+;Distance=2296;DiscordantMatePairAlignments=102;LeftRepeat=THE1C:LTR:MaLR;RightRepeat=L1M1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr3	CG	SV	164027502	164028056	102	-	.	ID=845;Type=complex;Left=chr3:164027502-164028056;Right=chr3:164030352-164030759
chr3	CG	SV	164030352	164030759	102	-	.	ID=845;Type=complex;Left=chr3:164027502-164028056;Right=chr3:164030352-164030759
chr3	CG	SV	164247593	164252424	122	.	.	ID=4657;Type=deletion;Left=chr3:164247593-164248155+;Right=chr3:164251778-164252424+;Distance=4185;DiscordantMatePairAlignments=122;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Tandem TG;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67657160 (chr3:164247595-164251776);Frequency=0.88
chr3	CG	SV	164247593	164248155	122	+	.	ID=4657;Type=deletion;Left=chr3:164247593-164248155;Right=chr3:164251778-164252424
chr3	CG	SV	164251778	164252424	122	+	.	ID=4657;Type=deletion;Left=chr3:164247593-164248155;Right=chr3:164251778-164252424
chr3	CG	SV	175385771	175474457	76	.	.	ID=1998;Type=tandem-duplication;Left=chr3:175385771-175386386-;Right=chr3:175473784-175474457-;Distance=88071;DiscordantMatePairAlignments=76;LeftRepeat=;RightRepeat=;LeftGenes=NM_014932:+;RightGenes=NM_014932:+;XRef=;Frequency=0.00
chr3	CG	SV	175385771	175386386	76	-	.	ID=1998;Type=tandem-duplication;Left=chr3:175385771-175386386;Right=chr3:175473784-175474457
chr3	CG	SV	175473784	175474457	76	-	.	ID=1998;Type=tandem-duplication;Left=chr3:175385771-175386386;Right=chr3:175473784-175474457
chr3	CG	SV	181137035	181137988	13	.	.	ID=4651;Type=deletion;Left=chr3:181137035-181137529+;Right=chr3:181137500-181137988+;Distance=465;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=;LeftGenes=NM_016559:-;RightGenes=NM_016559:-;XRef=rs66526785 (chr3:181137035-181137500);Frequency=0.94
chr3	CG	SV	181137035	181137529	13	+	.	ID=4651;Type=deletion;Left=chr3:181137035-181137529;Right=chr3:181137500-181137988
chr3	CG	SV	181137500	181137988	13	+	.	ID=4651;Type=deletion;Left=chr3:181137035-181137529;Right=chr3:181137500-181137988
chr3	CG	SV	185359545	185360390	34	.	.	ID=4650;Type=deletion;Left=chr3:185359545-185360144+;Right=chr3:185360132-185360390+;Distance=587;DiscordantMatePairAlignments=34;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_004423:+;RightGenes=NM_004423:+;XRef=;Frequency=0.76
chr3	CG	SV	185359545	185360144	34	+	.	ID=4650;Type=deletion;Left=chr3:185359545-185360144;Right=chr3:185360132-185360390
chr3	CG	SV	185360132	185360390	34	+	.	ID=4650;Type=deletion;Left=chr3:185359545-185360144;Right=chr3:185360132-185360390
chr3	CG	SV	186998780	186999263	17	-	.	ID=1759;Type=interchromosomal;Left=chr3:186998780-186999263-;Right=chr12:73463413-73463942-;Distance=;DiscordantMatePairAlignments=17;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=;LeftGenes=NM_001007225:-;NM_006548:-;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	73463413	73463942	17	-	.	ID=1759;Type=interchromosomal;Left=chr3:186998780-186999263-;Right=chr12:73463413-73463942-;Distance=;DiscordantMatePairAlignments=17;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=;LeftGenes=NM_001007225:-;NM_006548:-;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	188063717	188068514	71	.	.	ID=4647;Type=deletion;Left=chr3:188063717-188064323+;Right=chr3:188067986-188068514+;Distance=4269;DiscordantMatePairAlignments=71;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66463946 (chr3:188063709-188067978);Frequency=1.00
chr3	CG	SV	188063717	188064323	71	+	.	ID=4647;Type=deletion;Left=chr3:188063717-188064323;Right=chr3:188067986-188068514
chr3	CG	SV	188067986	188068514	71	+	.	ID=4647;Type=deletion;Left=chr3:188063717-188064323;Right=chr3:188067986-188068514
chr3	CG	SV	191220042	191223751	34	.	.	ID=4645;Type=deletion;Left=chr3:191220042-191220620+;Right=chr3:191223222-191223751+;Distance=3180;DiscordantMatePairAlignments=34;LeftRepeat=;RightRepeat=MER5A:DNA:MER1_type;LeftGenes=NM_001134418:-;NM_018192:-;RightGenes=NM_001134418:-;NM_018192:-;XRef=rs66785223 (chr3:191220042-191223222);Frequency=0.65
chr3	CG	SV	191220042	191220620	34	+	.	ID=4645;Type=deletion;Left=chr3:191220042-191220620;Right=chr3:191223222-191223751
chr3	CG	SV	191223222	191223751	34	+	.	ID=4645;Type=deletion;Left=chr3:191220042-191220620;Right=chr3:191223222-191223751
chr3	CG	SV	193338790	193339571	16	.	.	ID=4643;Type=deletion;Left=chr3:193338790-193339525+;Right=chr3:193339128-193339571+;Distance=338;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr3	CG	SV	193338790	193339525	16	+	.	ID=4643;Type=deletion;Left=chr3:193338790-193339525;Right=chr3:193339128-193339571
chr3	CG	SV	193339128	193339571	16	+	.	ID=4643;Type=deletion;Left=chr3:193338790-193339525;Right=chr3:193339128-193339571
chr3	CG	SV	194227049	194228229	32	.	.	ID=4642;Type=deletion;Left=chr3:194227049-194227360+;Right=chr3:194227589-194228229+;Distance=540;DiscordantMatePairAlignments=32;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66924869 (chr3:194227047-194227587);Frequency=0.59
chr3	CG	SV	194227049	194227360	32	+	.	ID=4642;Type=deletion;Left=chr3:194227049-194227360;Right=chr3:194227589-194228229
chr3	CG	SV	194227589	194228229	32	+	.	ID=4642;Type=deletion;Left=chr3:194227049-194227360;Right=chr3:194227589-194228229
chr3	CG	SV	194358026	194368774	72	.	.	ID=4641;Type=deletion;Left=chr3:194358026-194358633+;Right=chr3:194368102-194368774+;Distance=10076;DiscordantMatePairAlignments=72;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr3	CG	SV	194358026	194358633	72	+	.	ID=4641;Type=deletion;Left=chr3:194358026-194358633;Right=chr3:194368102-194368774
chr3	CG	SV	194368102	194368774	72	+	.	ID=4641;Type=deletion;Left=chr3:194358026-194358633;Right=chr3:194368102-194368774
chr3	CG	SV	196024580	196027724	96	.	.	ID=4639;Type=distal-duplication;Left=chr3:196024580-196025301+;Right=chr3:196027546-196027724+;Distance=2966;DiscordantMatePairAlignments=96;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72236752 (chr3:196024579-196027545);Frequency=0.76
chr3	CG	SV	196024580	196025301	96	+	.	ID=4639;Type=distal-duplication;Left=chr3:196024580-196025301;Right=chr3:196027546-196027724
chr3	CG	SV	196027546	196027724	96	+	.	ID=4639;Type=distal-duplication;Left=chr3:196024580-196025301;Right=chr3:196027546-196027724
chr3	CG	SV	196023978	196027838	118	.	.	ID=1996;Type=distal-duplication;Left=chr3:196023978-196024598-;Right=chr3:196027542-196027838-;Distance=3240;DiscordantMatePairAlignments=118;LeftRepeat=;RightRepeat=Tandem period 120;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr3	CG	SV	196023978	196024598	118	-	.	ID=1996;Type=distal-duplication;Left=chr3:196023978-196024598;Right=chr3:196027542-196027838
chr3	CG	SV	196027542	196027838	118	-	.	ID=1996;Type=distal-duplication;Left=chr3:196023978-196024598;Right=chr3:196027542-196027838
chr3	CG	SV	197138792	197140116	29	.	.	ID=4637;Type=deletion;Left=chr3:197138792-197139353+;Right=chr3:197139765-197140116+;Distance=973;DiscordantMatePairAlignments=29;LeftRepeat=LTR5_Hs:LTR:ERVK;Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr3	CG	SV	197138792	197139353	29	+	.	ID=4637;Type=deletion;Left=chr3:197138792-197139353;Right=chr3:197139765-197140116
chr3	CG	SV	197139765	197140116	29	+	.	ID=4637;Type=deletion;Left=chr3:197138792-197139353;Right=chr3:197139765-197140116
chr4	CG	SV	89613	95923	55	.	.	ID=843;Type=probable-inversion;Left=chr4:89613-90294-;Right=chr4:95430-95923+;Distance=5136;DiscordantMatePairAlignments=55;LeftRepeat=MER61C-int:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=NM_001039127:+;RightGenes=NM_001039127:+;XRef=;Frequency=0.00
chr4	CG	SV	89613	90294	55	-	.	ID=843;Type=probable-inversion;Left=chr4:89613-90294;Right=chr4:95430-95923
chr4	CG	SV	95430	95923	55	-	.	ID=843;Type=probable-inversion;Left=chr4:89613-90294;Right=chr4:95430-95923
chr4	CG	SV	1495726	1497285	16	.	.	ID=4633;Type=deletion;Left=chr4:1495726-1496195+;Right=chr4:1497028-1497285+;Distance=1302;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 93;RightRepeat=Self chain;Tandem period 93;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr4	CG	SV	1495726	1496195	16	+	.	ID=4633;Type=deletion;Left=chr4:1495726-1496195;Right=chr4:1497028-1497285
chr4	CG	SV	1497028	1497285	16	+	.	ID=4633;Type=deletion;Left=chr4:1495726-1496195;Right=chr4:1497028-1497285
chr4	CG	SV	3582015	3582926	24	.	.	ID=4631;Type=deletion;Left=chr4:3582015-3582891+;Right=chr4:3582467-3582926+;Distance=452;DiscordantMatePairAlignments=24;LeftRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Self chain;Tandem CATC;Tandem period 19;Tandem period 27;Tandem period 35;Tandem period 53;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Self chain;Tandem CATC;Tandem period 19;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	3582015	3582891	24	+	.	ID=4631;Type=deletion;Left=chr4:3582015-3582891;Right=chr4:3582467-3582926
chr4	CG	SV	3582467	3582926	24	+	.	ID=4631;Type=deletion;Left=chr4:3582015-3582891;Right=chr4:3582467-3582926
chr4	CG	SV	3583174	3588632	81	.	.	ID=4630;Type=deletion;Left=chr4:3583174-3583851+;Right=chr4:3588419-3588632+;Distance=5245;DiscordantMatePairAlignments=81;LeftRepeat=Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	3583174	3583851	81	+	.	ID=4630;Type=deletion;Left=chr4:3583174-3583851;Right=chr4:3588419-3588632
chr4	CG	SV	3588419	3588632	81	+	.	ID=4630;Type=deletion;Left=chr4:3583174-3583851;Right=chr4:3588419-3588632
chr4	CG	SV	5885791	5886751	12	.	.	ID=4629;Type=deletion;Left=chr4:5885791-5886478+;Right=chr4:5886104-5886751+;Distance=313;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=MLT1C:LTR:MaLR;Self chain;LeftGenes=NM_001014809:-;NM_001313:-;RightGenes=NM_001014809:-;NM_001313:-;XRef=;Frequency=0.18
chr4	CG	SV	5885791	5886478	12	+	.	ID=4629;Type=deletion;Left=chr4:5885791-5886478;Right=chr4:5886104-5886751
chr4	CG	SV	5886104	5886751	12	+	.	ID=4629;Type=deletion;Left=chr4:5885791-5886478;Right=chr4:5886104-5886751
chr4	CG	SV	6702494	6704187	33	.	.	ID=4628;Type=deletion;Left=chr4:6702494-6703142+;Right=chr4:6703815-6704187+;Distance=1321;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr4	CG	SV	6702494	6703142	33	+	.	ID=4628;Type=deletion;Left=chr4:6702494-6703142;Right=chr4:6703815-6704187
chr4	CG	SV	6703815	6704187	33	+	.	ID=4628;Type=deletion;Left=chr4:6702494-6703142;Right=chr4:6703815-6704187
chr4	CG	SV	6948380	6951818	30	.	.	ID=4627;Type=deletion;Left=chr4:6948380-6949174+;Right=chr4:6951428-6951818+;Distance=3048;DiscordantMatePairAlignments=30;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs10523950 (chr4:6948185-6951235);Frequency=0.88
chr4	CG	SV	6948380	6949174	30	+	.	ID=4627;Type=deletion;Left=chr4:6948380-6949174;Right=chr4:6951428-6951818
chr4	CG	SV	6951428	6951818	30	+	.	ID=4627;Type=deletion;Left=chr4:6948380-6949174;Right=chr4:6951428-6951818
chr4	CG	SV	10001528	10011826	177	.	.	ID=4623;Type=deletion;Left=chr4:10001528-10002171+;Right=chr4:10011279-10011826+;Distance=9751;DiscordantMatePairAlignments=177;LeftRepeat=L1MA3:LINE:L1;RightRepeat=L1MEe:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr4	CG	SV	10001528	10002171	177	+	.	ID=4623;Type=deletion;Left=chr4:10001528-10002171;Right=chr4:10011279-10011826
chr4	CG	SV	10011279	10011826	177	+	.	ID=4623;Type=deletion;Left=chr4:10001528-10002171;Right=chr4:10011279-10011826
chr4	CG	SV	18688556	18695237	263	.	.	ID=4620;Type=deletion;Left=chr4:18688556-18689098+;Right=chr4:18694656-18695237+;Distance=6100;DiscordantMatePairAlignments=263;LeftRepeat=L1ME1:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67968762 (chr4:18688563-18694663);Frequency=0.71
chr4	CG	SV	18688556	18689098	263	+	.	ID=4620;Type=deletion;Left=chr4:18688556-18689098;Right=chr4:18694656-18695237
chr4	CG	SV	18694656	18695237	263	+	.	ID=4620;Type=deletion;Left=chr4:18688556-18689098;Right=chr4:18694656-18695237
chr4	CG	SV	28030689	28031649	10	.	.	ID=4618;Type=deletion;Left=chr4:28030689-28031216+;Right=chr4:28031039-28031649+;Distance=350;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67669865 (chr4:28030689-28031039);Frequency=0.94
chr4	CG	SV	28030689	28031216	10	+	.	ID=4618;Type=deletion;Left=chr4:28030689-28031216;Right=chr4:28031039-28031649
chr4	CG	SV	28031039	28031649	10	+	.	ID=4618;Type=deletion;Left=chr4:28030689-28031216;Right=chr4:28031039-28031649
chr4	CG	SV	33523565	33525176	99	.	.	ID=4615;Type=deletion;Left=chr4:33523565-33523865+;Right=chr4:33524623-33525176+;Distance=1058;DiscordantMatePairAlignments=99;LeftRepeat=MER11C:LTR:ERVK;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66649474 (chr4:33523565-33524622);Frequency=1.00
chr4	CG	SV	33523565	33523865	99	+	.	ID=4615;Type=deletion;Left=chr4:33523565-33523865;Right=chr4:33524623-33525176
chr4	CG	SV	33524623	33525176	99	+	.	ID=4615;Type=deletion;Left=chr4:33523565-33523865;Right=chr4:33524623-33525176
chr4	CG	SV	33957965	33974006	33	.	.	ID=4614;Type=deletion;Left=chr4:33957965-33958505+;Right=chr4:33973536-33974006+;Distance=15571;DiscordantMatePairAlignments=33;LeftRepeat=L1PBa:LINE:L1;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	33957965	33958505	33	+	.	ID=4614;Type=deletion;Left=chr4:33957965-33958505;Right=chr4:33973536-33974006
chr4	CG	SV	33973536	33974006	33	+	.	ID=4614;Type=deletion;Left=chr4:33957965-33958505;Right=chr4:33973536-33974006
chr4	CG	SV	39701347	39703271	14	.	.	ID=4613;Type=deletion;Left=chr4:39701347-39701830+;Right=chr4:39702713-39703271+;Distance=1366;DiscordantMatePairAlignments=14;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=AluSq:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs67318308 (chr4:39701310-39702676);Frequency=0.94
chr4	CG	SV	39701347	39701830	14	+	.	ID=4613;Type=deletion;Left=chr4:39701347-39701830;Right=chr4:39702713-39703271
chr4	CG	SV	39702713	39703271	14	+	.	ID=4613;Type=deletion;Left=chr4:39701347-39701830;Right=chr4:39702713-39703271
chr4	CG	SV	41302912	181820093	54	.	.	ID=1980;Type=tandem-duplication;Left=chr4:41302912-41303589-;Right=chr4:181819648-181820093-;Distance=140516504;DiscordantMatePairAlignments=54;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_001112717:+;NM_001112718:+;NM_014988:+;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	41302912	41303589	54	-	.	ID=1980;Type=tandem-duplication;Left=chr4:41302912-41303589;Right=chr4:181819648-181820093
chr4	CG	SV	181819648	181820093	54	-	.	ID=1980;Type=tandem-duplication;Left=chr4:41302912-41303589;Right=chr4:181819648-181820093
chr4	CG	SV	43151963	127741229	98	.	.	ID=838;Type=probable-inversion;Left=chr4:43151963-43152461-;Right=chr4:127740545-127741229+;Distance=84588084;DiscordantMatePairAlignments=98;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	43151963	43152461	98	-	.	ID=838;Type=probable-inversion;Left=chr4:43151963-43152461;Right=chr4:127740545-127741229
chr4	CG	SV	127740545	127741229	98	-	.	ID=838;Type=probable-inversion;Left=chr4:43151963-43152461;Right=chr4:127740545-127741229
chr4	CG	SV	43407539	43970988	34	.	.	ID=1992;Type=tandem-duplication;Left=chr4:43407539-43408033-;Right=chr4:43970651-43970988-;Distance=562955;DiscordantMatePairAlignments=34;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=NM_198353:-;XRef=;Frequency=0.00
chr4	CG	SV	43407539	43408033	34	-	.	ID=1992;Type=tandem-duplication;Left=chr4:43407539-43408033;Right=chr4:43970651-43970988
chr4	CG	SV	43970651	43970988	34	-	.	ID=1992;Type=tandem-duplication;Left=chr4:43407539-43408033;Right=chr4:43970651-43970988
chr4	CG	SV	43559026	43559437	24	+	.	ID=4545;Type=interchromosomal;Left=chr4:43559026-43559437+;Right=chr5:163279472-163279935+;Distance=;DiscordantMatePairAlignments=24;LeftRepeat=;RightRepeat=MLT-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	163279472	163279935	24	+	.	ID=4545;Type=interchromosomal;Left=chr4:43559026-43559437+;Right=chr5:163279472-163279935+;Distance=;DiscordantMatePairAlignments=24;LeftRepeat=;RightRepeat=MLT-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	44202036	44203056	14	.	.	ID=4610;Type=deletion;Left=chr4:44202036-44202571+;Right=chr4:44202490-44203056+;Distance=454;DiscordantMatePairAlignments=14;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66553088 (chr4:44202036-44202490);Frequency=1.00
chr4	CG	SV	44202036	44202571	14	+	.	ID=4610;Type=deletion;Left=chr4:44202036-44202571;Right=chr4:44202490-44203056
chr4	CG	SV	44202490	44203056	14	+	.	ID=4610;Type=deletion;Left=chr4:44202036-44202571;Right=chr4:44202490-44203056
chr4	CG	SV	45897554	45900509	44	.	.	ID=4608;Type=deletion;Left=chr4:45897554-45898027+;Right=chr4:45899785-45900509+;Distance=2231;DiscordantMatePairAlignments=44;LeftRepeat=MIR:SINE:MIR;RightRepeat=L1MEc:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72385984 (chr4:45897552-45899783);Frequency=0.53
chr4	CG	SV	45897554	45898027	44	+	.	ID=4608;Type=deletion;Left=chr4:45897554-45898027;Right=chr4:45899785-45900509
chr4	CG	SV	45899785	45900509	44	+	.	ID=4608;Type=deletion;Left=chr4:45897554-45898027;Right=chr4:45899785-45900509
chr4	CG	SV	57782107	57782981	23	.	.	ID=4606;Type=deletion;Left=chr4:57782107-57782814+;Right=chr4:57782505-57782981+;Distance=398;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10525076 (chr4:57782093-57782491);Frequency=1.00
chr4	CG	SV	57782107	57782814	23	+	.	ID=4606;Type=deletion;Left=chr4:57782107-57782814;Right=chr4:57782505-57782981
chr4	CG	SV	57782505	57782981	23	+	.	ID=4606;Type=deletion;Left=chr4:57782107-57782814;Right=chr4:57782505-57782981
chr4	CG	SV	57842787	57843839	19	.	.	ID=4605;Type=deletion;Left=chr4:57842787-57843378+;Right=chr4:57843113-57843839+;Distance=326;DiscordantMatePairAlignments=19;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71180070 (chr4:57842787-57843113);Frequency=0.82
chr4	CG	SV	57842787	57843378	19	+	.	ID=4605;Type=deletion;Left=chr4:57842787-57843378;Right=chr4:57843113-57843839
chr4	CG	SV	57843113	57843839	19	+	.	ID=4605;Type=deletion;Left=chr4:57842787-57843378;Right=chr4:57843113-57843839
chr4	CG	SV	59627160	59633749	249	.	.	ID=4604;Type=deletion;Left=chr4:59627160-59627809+;Right=chr4:59633202-59633749+;Distance=6042;DiscordantMatePairAlignments=249;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72460317 (chr4:59627160-59633202);Frequency=0.94
chr4	CG	SV	59627160	59627809	249	+	.	ID=4604;Type=deletion;Left=chr4:59627160-59627809;Right=chr4:59633202-59633749
chr4	CG	SV	59633202	59633749	249	+	.	ID=4604;Type=deletion;Left=chr4:59627160-59627809;Right=chr4:59633202-59633749
chr4	CG	SV	61012701	61016203	24	.	.	ID=4603;Type=deletion;Left=chr4:61012701-61013111+;Right=chr4:61015781-61016203+;Distance=3080;DiscordantMatePairAlignments=24;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1PA4:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66908185 (chr4:61012701-61015780);Frequency=0.76
chr4	CG	SV	61012701	61013111	24	+	.	ID=4603;Type=deletion;Left=chr4:61012701-61013111;Right=chr4:61015781-61016203
chr4	CG	SV	61015781	61016203	24	+	.	ID=4603;Type=deletion;Left=chr4:61012701-61013111;Right=chr4:61015781-61016203
chr4	CG	SV	62181502	62182525	11	.	.	ID=4601;Type=deletion;Left=chr4:62181502-62181849+;Right=chr4:62182333-62182525+;Distance=831;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 277;RightRepeat=Self chain;Tandem period 277;LeftGenes=NM_015236:+;RightGenes=NM_015236:+;XRef=;Frequency=0.53
chr4	CG	SV	62181502	62181849	11	+	.	ID=4601;Type=deletion;Left=chr4:62181502-62181849;Right=chr4:62182333-62182525
chr4	CG	SV	62182333	62182525	11	+	.	ID=4601;Type=deletion;Left=chr4:62181502-62181849;Right=chr4:62182333-62182525
chr4	CG	SV	79488151	79495151	338	.	.	ID=4596;Type=deletion;Left=chr4:79488151-79488833+;Right=chr4:79494226-79495151+;Distance=6075;DiscordantMatePairAlignments=338;LeftRepeat=;RightRepeat=;LeftGenes=NM_001166133:+;NM_025074:+;RightGenes=NM_001166133:+;NM_025074:+;XRef=;Frequency=1.00
chr4	CG	SV	79488151	79488833	338	+	.	ID=4596;Type=deletion;Left=chr4:79488151-79488833;Right=chr4:79494226-79495151
chr4	CG	SV	79494226	79495151	338	+	.	ID=4596;Type=deletion;Left=chr4:79488151-79488833;Right=chr4:79494226-79495151
chr4	CG	SV	81107078	81113620	126	.	.	ID=4595;Type=deletion;Left=chr4:81107078-81107699+;Right=chr4:81113123-81113620+;Distance=6045;DiscordantMatePairAlignments=126;LeftRepeat=;RightRepeat=;LeftGenes=NM_058172:-;RightGenes=NM_058172:-;XRef=rs72038936 (chr4:81107070-81113115);Frequency=0.88
chr4	CG	SV	81107078	81107699	126	+	.	ID=4595;Type=deletion;Left=chr4:81107078-81107699;Right=chr4:81113123-81113620
chr4	CG	SV	81113123	81113620	126	+	.	ID=4595;Type=deletion;Left=chr4:81107078-81107699;Right=chr4:81113123-81113620
chr4	CG	SV	82210554	82211483	10	.	.	ID=4593;Type=deletion;Left=chr4:82210554-82211164+;Right=chr4:82210875-82211483+;Distance=321;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67664013 (chr4:82210554-82210875);Frequency=1.00
chr4	CG	SV	82210554	82211164	10	+	.	ID=4593;Type=deletion;Left=chr4:82210554-82211164;Right=chr4:82210875-82211483
chr4	CG	SV	82210875	82211483	10	+	.	ID=4593;Type=deletion;Left=chr4:82210554-82211164;Right=chr4:82210875-82211483
chr4	CG	SV	86879793	86880817	10	.	.	ID=4590;Type=deletion;Left=chr4:86879793-86880371+;Right=chr4:86880115-86880817+;Distance=322;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=NM_001025616:+;RightGenes=NM_001025616:+;XRef=rs10705059 (chr4:86879793-86880115);Frequency=1.00
chr4	CG	SV	86879793	86880371	10	+	.	ID=4590;Type=deletion;Left=chr4:86879793-86880371;Right=chr4:86880115-86880817
chr4	CG	SV	86880115	86880817	10	+	.	ID=4590;Type=deletion;Left=chr4:86879793-86880371;Right=chr4:86880115-86880817
chr4	CG	SV	87936587	87992097	62	.	.	ID=1983;Type=tandem-duplication;Left=chr4:87936587-87936887-;Right=chr4:87991523-87992097-;Distance=55210;DiscordantMatePairAlignments=62;LeftRepeat=;RightRepeat=;LeftGenes=NM_006264:+;NM_080683:+;NM_080684:+;NM_080685:+;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	87936587	87936887	62	-	.	ID=1983;Type=tandem-duplication;Left=chr4:87936587-87936887;Right=chr4:87991523-87992097
chr4	CG	SV	87991523	87992097	62	-	.	ID=1983;Type=tandem-duplication;Left=chr4:87936587-87936887;Right=chr4:87991523-87992097
chr4	CG	SV	88702914	88706008	205	.	.	ID=4589;Type=deletion;Left=chr4:88702914-88703609+;Right=chr4:88705343-88706008+;Distance=2429;DiscordantMatePairAlignments=205;LeftRepeat=;RightRepeat=L1ME3B:LINE:L1;LeftGenes=;RightGenes=;XRef=rs66992231 (chr4:88702907-88705336);Frequency=0.65
chr4	CG	SV	88702914	88703609	205	+	.	ID=4589;Type=deletion;Left=chr4:88702914-88703609;Right=chr4:88705343-88706008
chr4	CG	SV	88705343	88706008	205	+	.	ID=4589;Type=deletion;Left=chr4:88702914-88703609;Right=chr4:88705343-88706008
chr4	CG	SV	91815815	91822477	137	.	.	ID=4587;Type=deletion;Left=chr4:91815815-91816470+;Right=chr4:91821938-91822477+;Distance=6123;DiscordantMatePairAlignments=137;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001145065:+;NM_207491:+;RightGenes=NM_001145065:+;NM_207491:+;XRef=rs68154073 (chr4:91815806-91821931);Frequency=1.00
chr4	CG	SV	91815815	91816470	137	+	.	ID=4587;Type=deletion;Left=chr4:91815815-91816470;Right=chr4:91821938-91822477
chr4	CG	SV	91821938	91822477	137	+	.	ID=4587;Type=deletion;Left=chr4:91815815-91816470;Right=chr4:91821938-91822477
chr4	CG	SV	91978522	92025527	23	.	.	ID=4586;Type=deletion;Left=chr4:91978522-91978981+;Right=chr4:92025038-92025527+;Distance=46516;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_001145065:+;RightGenes=NM_001145065:+;XRef=;Frequency=0.00
chr4	CG	SV	91978522	91978981	23	+	.	ID=4586;Type=deletion;Left=chr4:91978522-91978981;Right=chr4:92025038-92025527
chr4	CG	SV	92025038	92025527	23	+	.	ID=4586;Type=deletion;Left=chr4:91978522-91978981;Right=chr4:92025038-92025527
chr4	CG	SV	92150580	92155236	73	.	.	ID=4585;Type=deletion;Left=chr4:92150580-92151119+;Right=chr4:92154860-92155236+;Distance=4280;DiscordantMatePairAlignments=73;LeftRepeat=L1M2:LINE:L1;RightRepeat=;LeftGenes=NM_001145065:+;RightGenes=NM_001145065:+;XRef=rs68118003 (chr4:92150579-92154859);Frequency=0.76
chr4	CG	SV	92150580	92151119	73	+	.	ID=4585;Type=deletion;Left=chr4:92150580-92151119;Right=chr4:92154860-92155236
chr4	CG	SV	92154860	92155236	73	+	.	ID=4585;Type=deletion;Left=chr4:92150580-92151119;Right=chr4:92154860-92155236
chr4	CG	SV	94778477	94785309	187	.	.	ID=4580;Type=deletion;Left=chr4:94778477-94779111+;Right=chr4:94784528-94785309+;Distance=6051;DiscordantMatePairAlignments=187;LeftRepeat=;RightRepeat=;LeftGenes=NM_001510:+;RightGenes=NM_001510:+;XRef=rs67415856 (chr4:94778477-94784528);Frequency=0.41
chr4	CG	SV	94778477	94779111	187	+	.	ID=4580;Type=deletion;Left=chr4:94778477-94779111;Right=chr4:94784528-94785309
chr4	CG	SV	94784528	94785309	187	+	.	ID=4580;Type=deletion;Left=chr4:94778477-94779111;Right=chr4:94784528-94785309
chr4	CG	SV	100242071	100243149	10	.	.	ID=4575;Type=deletion;Left=chr4:100242071-100242677+;Right=chr4:100242405-100243149+;Distance=334;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	100242071	100242677	10	+	.	ID=4575;Type=deletion;Left=chr4:100242071-100242677;Right=chr4:100242405-100243149
chr4	CG	SV	100242405	100243149	10	+	.	ID=4575;Type=deletion;Left=chr4:100242071-100242677;Right=chr4:100242405-100243149
chr4	CG	SV	105113495	105114705	122	.	.	ID=4571;Type=deletion;Left=chr4:105113495-105114172+;Right=chr4:105114129-105114705+;Distance=634;DiscordantMatePairAlignments=122;LeftRepeat=HERV4_I:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71662133 (chr4:105113495-105114126);Frequency=0.94
chr4	CG	SV	105113495	105114172	122	+	.	ID=4571;Type=deletion;Left=chr4:105113495-105114172;Right=chr4:105114129-105114705
chr4	CG	SV	105114129	105114705	122	+	.	ID=4571;Type=deletion;Left=chr4:105113495-105114172;Right=chr4:105114129-105114705
chr4	CG	SV	108101479	108102137	136	-	.	ID=530;Type=complex;Left=chr4:108101479-108102137-;Right=chr22:27395610-27396123+;Distance=;DiscordantMatePairAlignments=136;LeftRepeat=;RightRepeat=;LeftGenes=NM_014421:-;RightGenes=NM_001145418:-;XRef=;Frequency=0.00
chr22	CG	SV	27395610	27396123	136	-	.	ID=530;Type=complex;Left=chr4:108101479-108102137-;Right=chr22:27395610-27396123+;Distance=;DiscordantMatePairAlignments=136;LeftRepeat=;RightRepeat=;LeftGenes=NM_014421:-;RightGenes=NM_001145418:-;XRef=;Frequency=0.00
chr4	CG	SV	108347260	108351844	219	.	.	ID=4570;Type=deletion;Left=chr4:108347260-108347868+;Right=chr4:108351166-108351844+;Distance=3906;DiscordantMatePairAlignments=219;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66829191 (chr4:108347277-108351183);Frequency=1.00
chr4	CG	SV	108347260	108347868	219	+	.	ID=4570;Type=deletion;Left=chr4:108347260-108347868;Right=chr4:108351166-108351844
chr4	CG	SV	108351166	108351844	219	+	.	ID=4570;Type=deletion;Left=chr4:108347260-108347868;Right=chr4:108351166-108351844
chr4	CG	SV	114205363	114206479	15	.	.	ID=4568;Type=deletion;Left=chr4:114205363-114205866+;Right=chr4:114205858-114206479+;Distance=495;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem period 33;RightRepeat=Self chain;LeftGenes=NM_001127493:+;NM_001148:+;NM_020977:+;RightGenes=NM_001127493:+;NM_001148:+;NM_020977:+;XRef=rs72075860 (chr4:114205429-114205858);Frequency=0.94
chr4	CG	SV	114205363	114205866	15	+	.	ID=4568;Type=deletion;Left=chr4:114205363-114205866;Right=chr4:114205858-114206479
chr4	CG	SV	114205858	114206479	15	+	.	ID=4568;Type=deletion;Left=chr4:114205363-114205866;Right=chr4:114205858-114206479
chr4	CG	SV	120246692	120247699	11	.	.	ID=4566;Type=deletion;Left=chr4:120246692-120247167+;Right=chr4:120247028-120247699+;Distance=336;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;RightRepeat=MLT1K:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr4	CG	SV	120246692	120247167	11	+	.	ID=4566;Type=deletion;Left=chr4:120246692-120247167;Right=chr4:120247028-120247699
chr4	CG	SV	120247028	120247699	11	+	.	ID=4566;Type=deletion;Left=chr4:120246692-120247167;Right=chr4:120247028-120247699
chr4	CG	SV	120483137	120484595	12	.	.	ID=4565;Type=deletion;Left=chr4:120483137-120483500+;Right=chr4:120484108-120484595+;Distance=971;DiscordantMatePairAlignments=12;LeftRepeat=LTR5_Hs:LTR:ERVK;SegDup;Self chain;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr4	CG	SV	120483137	120483500	12	+	.	ID=4565;Type=deletion;Left=chr4:120483137-120483500;Right=chr4:120484108-120484595
chr4	CG	SV	120484108	120484595	12	+	.	ID=4565;Type=deletion;Left=chr4:120483137-120483500;Right=chr4:120484108-120484595
chr4	CG	SV	123348281	123351466	127	.	.	ID=4564;Type=deletion;Left=chr4:123348281-123348903+;Right=chr4:123350932-123351466+;Distance=2651;DiscordantMatePairAlignments=127;LeftRepeat=;RightRepeat=;LeftGenes=NM_015312:+;RightGenes=NM_015312:+;XRef=;Frequency=0.00
chr4	CG	SV	123348281	123348903	127	+	.	ID=4564;Type=deletion;Left=chr4:123348281-123348903;Right=chr4:123350932-123351466
chr4	CG	SV	123350932	123351466	127	+	.	ID=4564;Type=deletion;Left=chr4:123348281-123348903;Right=chr4:123350932-123351466
chr4	CG	SV	125163014	125165191	77	.	.	ID=4563;Type=deletion;Left=chr4:125163014-125163542+;Right=chr4:125164648-125165191+;Distance=1634;DiscordantMatePairAlignments=77;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68108143 (chr4:125163017-125164651);Frequency=0.53
chr4	CG	SV	125163014	125163542	77	+	.	ID=4563;Type=deletion;Left=chr4:125163014-125163542;Right=chr4:125164648-125165191
chr4	CG	SV	125164648	125165191	77	+	.	ID=4563;Type=deletion;Left=chr4:125163014-125163542;Right=chr4:125164648-125165191
chr4	CG	SV	130435952	130439566	370	.	.	ID=4562;Type=deletion;Left=chr4:130435952-130436505+;Right=chr4:130438935-130439566+;Distance=2983;DiscordantMatePairAlignments=370;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr4	CG	SV	130435952	130436505	370	+	.	ID=4562;Type=deletion;Left=chr4:130435952-130436505;Right=chr4:130438935-130439566
chr4	CG	SV	130438935	130439566	370	+	.	ID=4562;Type=deletion;Left=chr4:130435952-130436505;Right=chr4:130438935-130439566
chr4	CG	SV	135652479	135655761	78	.	.	ID=4561;Type=deletion;Left=chr4:135652479-135653058+;Right=chr4:135655151-135655761+;Distance=2672;DiscordantMatePairAlignments=78;LeftRepeat=Arthur1:DNA:Tip100;RightRepeat=L1MA9:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72144499 (chr4:135652457-135655151);Frequency=0.71
chr4	CG	SV	135652479	135653058	78	+	.	ID=4561;Type=deletion;Left=chr4:135652479-135653058;Right=chr4:135655151-135655761
chr4	CG	SV	135655151	135655761	78	+	.	ID=4561;Type=deletion;Left=chr4:135652479-135653058;Right=chr4:135655151-135655761
chr4	CG	SV	137282833	137283452	51	-	.	ID=831;Type=interchromosomal;Left=chr4:137282833-137283452-;Right=chr6:32978878-32979412+;Distance=;DiscordantMatePairAlignments=51;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	32978878	32979412	51	-	.	ID=831;Type=interchromosomal;Left=chr4:137282833-137283452-;Right=chr6:32978878-32979412+;Distance=;DiscordantMatePairAlignments=51;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	139185661	139187309	293	.	.	ID=4560;Type=deletion;Left=chr4:139185661-139186270+;Right=chr4:139186668-139187309+;Distance=1007;DiscordantMatePairAlignments=293;LeftRepeat=MER61D:LTR:ERV1;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66727003 (chr4:139185661-139186667);Frequency=0.59
chr4	CG	SV	139185661	139186270	293	+	.	ID=4560;Type=deletion;Left=chr4:139185661-139186270;Right=chr4:139186668-139187309
chr4	CG	SV	139186668	139187309	293	+	.	ID=4560;Type=deletion;Left=chr4:139185661-139186270;Right=chr4:139186668-139187309
chr4	CG	SV	146658263	146660492	131	.	.	ID=4559;Type=deletion;Left=chr4:146658263-146658829+;Right=chr4:146659907-146660492+;Distance=1644;DiscordantMatePairAlignments=131;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001003688:+;NM_005900:+;RightGenes=NM_001003688:+;NM_005900:+;XRef=rs67125785 (chr4:146658263-146659907);Frequency=0.59
chr4	CG	SV	146658263	146658829	131	+	.	ID=4559;Type=deletion;Left=chr4:146658263-146658829;Right=chr4:146659907-146660492
chr4	CG	SV	146659907	146660492	131	+	.	ID=4559;Type=deletion;Left=chr4:146658263-146658829;Right=chr4:146659907-146660492
chr4	CG	SV	152560157	152561711	291	.	.	ID=4558;Type=deletion;Left=chr4:152560157-152560874+;Right=chr4:152561004-152561711+;Distance=847;DiscordantMatePairAlignments=291;LeftRepeat=;RightRepeat=L1HS:LINE:L1;LeftGenes=NM_001109977:+;RightGenes=NM_001109977:+;XRef=rs72214776 (chr4:152560155-152561002);Frequency=0.94
chr4	CG	SV	152560157	152560874	291	+	.	ID=4558;Type=deletion;Left=chr4:152560157-152560874;Right=chr4:152561004-152561711
chr4	CG	SV	152561004	152561711	291	+	.	ID=4558;Type=deletion;Left=chr4:152560157-152560874;Right=chr4:152561004-152561711
chr4	CG	SV	153315133	153316351	32	.	.	ID=4557;Type=deletion;Left=chr4:153315133-153315873+;Right=chr4:153315732-153316351+;Distance=599;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr4	CG	SV	153315133	153315873	32	+	.	ID=4557;Type=deletion;Left=chr4:153315133-153315873;Right=chr4:153315732-153316351
chr4	CG	SV	153315732	153316351	32	+	.	ID=4557;Type=deletion;Left=chr4:153315133-153315873;Right=chr4:153315732-153316351
chr4	CG	SV	166222123	166224818	65	.	.	ID=4555;Type=deletion;Left=chr4:166222123-166222640+;Right=chr4:166224561-166224818+;Distance=2438;DiscordantMatePairAlignments=65;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_001100389:-;RightGenes=NM_001100389:-;XRef=rs71937308 (chr4:166222054-166224492);Frequency=1.00
chr4	CG	SV	166222123	166222640	65	+	.	ID=4555;Type=deletion;Left=chr4:166222123-166222640;Right=chr4:166224561-166224818
chr4	CG	SV	166224561	166224818	65	+	.	ID=4555;Type=deletion;Left=chr4:166222123-166222640;Right=chr4:166224561-166224818
chr4	CG	SV	167223766	167224977	39	.	.	ID=4554;Type=deletion;Left=chr4:167223766-167224338+;Right=chr4:167224369-167224977+;Distance=603;DiscordantMatePairAlignments=39;LeftRepeat=Self chain;RightRepeat=L1MA8:LINE:L1;Self chain;LeftGenes=NM_012464:+;RightGenes=NM_012464:+;XRef=rs72050237 (chr4:167223766-167224362);Frequency=0.76
chr4	CG	SV	167223766	167224338	39	+	.	ID=4554;Type=deletion;Left=chr4:167223766-167224338;Right=chr4:167224369-167224977
chr4	CG	SV	167224369	167224977	39	+	.	ID=4554;Type=deletion;Left=chr4:167223766-167224338;Right=chr4:167224369-167224977
chr4	CG	SV	167913620	167920245	172	.	.	ID=4552;Type=deletion;Left=chr4:167913620-167914208+;Right=chr4:167919655-167920245+;Distance=6035;DiscordantMatePairAlignments=172;LeftRepeat=;RightRepeat=;LeftGenes=NM_001040159:-;NM_016950:-;RightGenes=NM_001040159:-;NM_016950:-;XRef=rs71929678 (chr4:167913623-167919658);Frequency=0.88
chr4	CG	SV	167913620	167914208	172	+	.	ID=4552;Type=deletion;Left=chr4:167913620-167914208;Right=chr4:167919655-167920245
chr4	CG	SV	167919655	167920245	172	+	.	ID=4552;Type=deletion;Left=chr4:167913620-167914208;Right=chr4:167919655-167920245
chr4	CG	SV	170515039	170516124	13	.	.	ID=4551;Type=deletion;Left=chr4:170515039-170515418+;Right=chr4:170515460-170516124+;Distance=421;DiscordantMatePairAlignments=13;LeftRepeat=AluJo:SINE:Alu;RightRepeat=MER58A:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs67724482 (chr4:170515039-170515460);Frequency=0.82
chr4	CG	SV	170515039	170515418	13	+	.	ID=4551;Type=deletion;Left=chr4:170515039-170515418;Right=chr4:170515460-170516124
chr4	CG	SV	170515460	170516124	13	+	.	ID=4551;Type=deletion;Left=chr4:170515039-170515418;Right=chr4:170515460-170516124
chr4	CG	SV	172645648	172649137	18	.	.	ID=1692;Type=tandem-duplication;Left=chr4:172645648-172646047-;Right=chr4:172648699-172649137-;Distance=3090;DiscordantMatePairAlignments=18;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	172645648	172646047	18	-	.	ID=1692;Type=tandem-duplication;Left=chr4:172645648-172646047;Right=chr4:172648699-172649137
chr4	CG	SV	172648699	172649137	18	-	.	ID=1692;Type=tandem-duplication;Left=chr4:172645648-172646047;Right=chr4:172648699-172649137
chr4	CG	SV	173661607	173670659	94	.	.	ID=4323;Type=deletion;Left=chr4:173661607-173661942+;Right=chr4:173670095-173670659+;Distance=8488;DiscordantMatePairAlignments=94;LeftRepeat=Self chain;RightRepeat=L1PB1:LINE:L1;LeftGenes=NM_001034845:+;RightGenes=NM_001034845:+;XRef=rs67651552 (chr4:173661607-173670094);Frequency=0.94
chr4	CG	SV	173661607	173661942	94	+	.	ID=4323;Type=deletion;Left=chr4:173661607-173661942;Right=chr4:173670095-173670659
chr4	CG	SV	173670095	173670659	94	+	.	ID=4323;Type=deletion;Left=chr4:173661607-173661942;Right=chr4:173670095-173670659
chr4	CG	SV	175741511	175742303	28	.	.	ID=4321;Type=complex;Left=chr4:175741511-175742113+;Right=chr4:175741934-175742303+;Distance=423;DiscordantMatePairAlignments=28;LeftRepeat=AluSc:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72035570 (chr4:175741516-175741934);Frequency=0.10
chr4	CG	SV	175741511	175742113	28	+	.	ID=4321;Type=complex;Left=chr4:175741511-175742113;Right=chr4:175741934-175742303
chr4	CG	SV	175741934	175742303	28	+	.	ID=4321;Type=complex;Left=chr4:175741511-175742113;Right=chr4:175741934-175742303
chr4	CG	SV	175741511	175742554	11	.	.	ID=4322;Type=complex;Left=chr4:175741511-175742011+;Right=chr4:175741934-175742554+;Distance=423;DiscordantMatePairAlignments=11;LeftRepeat=AluSc:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr4	CG	SV	175741511	175742011	11	+	.	ID=4322;Type=complex;Left=chr4:175741511-175742011;Right=chr4:175741934-175742554
chr4	CG	SV	175741934	175742554	11	+	.	ID=4322;Type=complex;Left=chr4:175741511-175742011;Right=chr4:175741934-175742554
chr4	CG	SV	179490602	179491821	16	.	.	ID=1691;Type=tandem-duplication;Left=chr4:179490602-179490744-;Right=chr4:179491227-179491821-;Distance=1077;DiscordantMatePairAlignments=16;LeftRepeat=L1MEd:LINE:L1;RightRepeat=L1MD2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr4	CG	SV	179490602	179490744	16	-	.	ID=1691;Type=tandem-duplication;Left=chr4:179490602-179490744;Right=chr4:179491227-179491821
chr4	CG	SV	179491227	179491821	16	-	.	ID=1691;Type=tandem-duplication;Left=chr4:179490602-179490744;Right=chr4:179491227-179491821
chr4	CG	SV	180317574	180348908	60	.	.	ID=1690;Type=tandem-duplication;Left=chr4:180317574-180318145-;Right=chr4:180348356-180348908-;Distance=30763;DiscordantMatePairAlignments=60;LeftRepeat=L1M4:LINE:L1;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	180317574	180318145	60	-	.	ID=1690;Type=tandem-duplication;Left=chr4:180317574-180318145;Right=chr4:180348356-180348908
chr4	CG	SV	180348356	180348908	60	-	.	ID=1690;Type=tandem-duplication;Left=chr4:180317574-180318145;Right=chr4:180348356-180348908
chr4	CG	SV	182113796	182115963	211	.	.	ID=4314;Type=deletion;Left=chr4:182113796-182114552+;Right=chr4:182115298-182115963+;Distance=1502;DiscordantMatePairAlignments=211;LeftRepeat=L1HS:LINE:L1;Tandem T;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67900735 (chr4:182113796-182115298);Frequency=1.00
chr4	CG	SV	182113796	182114552	211	+	.	ID=4314;Type=deletion;Left=chr4:182113796-182114552;Right=chr4:182115298-182115963
chr4	CG	SV	182115298	182115963	211	+	.	ID=4314;Type=deletion;Left=chr4:182113796-182114552;Right=chr4:182115298-182115963
chr4	CG	SV	184494983	184495989	10	.	.	ID=4312;Type=deletion;Left=chr4:184494983-184495377+;Right=chr4:184495571-184495989+;Distance=588;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 42;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr4	CG	SV	184494983	184495377	10	+	.	ID=4312;Type=deletion;Left=chr4:184494983-184495377;Right=chr4:184495571-184495989
chr4	CG	SV	184495571	184495989	10	+	.	ID=4312;Type=deletion;Left=chr4:184494983-184495377;Right=chr4:184495571-184495989
chr4	CG	SV	184892827	184896613	40	.	.	ID=4309;Type=deletion;Left=chr4:184892827-184893539+;Right=chr4:184895979-184896613+;Distance=3152;DiscordantMatePairAlignments=40;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71162502 (chr4:184892827-184895979);Frequency=0.35
chr4	CG	SV	184892827	184893539	40	+	.	ID=4309;Type=deletion;Left=chr4:184892827-184893539;Right=chr4:184895979-184896613
chr4	CG	SV	184895979	184896613	40	+	.	ID=4309;Type=deletion;Left=chr4:184892827-184893539;Right=chr4:184895979-184896613
chr4	CG	SV	184911427	184913179	56	.	.	ID=4308;Type=deletion;Left=chr4:184911427-184912059+;Right=chr4:184912887-184913179+;Distance=1460;DiscordantMatePairAlignments=56;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr4	CG	SV	184911427	184912059	56	+	.	ID=4308;Type=deletion;Left=chr4:184911427-184912059;Right=chr4:184912887-184913179
chr4	CG	SV	184912887	184913179	56	+	.	ID=4308;Type=deletion;Left=chr4:184911427-184912059;Right=chr4:184912887-184913179
chr4	CG	SV	186678631	186681629	218	.	.	ID=4306;Type=deletion;Left=chr4:186678631-186679215+;Right=chr4:186681069-186681629+;Distance=2438;DiscordantMatePairAlignments=218;LeftRepeat=;RightRepeat=;LeftGenes=NM_001114107:-;NM_014476:-;RightGenes=NM_001114107:-;NM_014476:-;XRef=;Frequency=0.94
chr4	CG	SV	186678631	186679215	218	+	.	ID=4306;Type=deletion;Left=chr4:186678631-186679215;Right=chr4:186681069-186681629
chr4	CG	SV	186681069	186681629	218	+	.	ID=4306;Type=deletion;Left=chr4:186678631-186679215;Right=chr4:186681069-186681629
chr4	CG	SV	187330481	187335625	63	.	.	ID=4305;Type=deletion;Left=chr4:187330481-187330865+;Right=chr4:187335235-187335625+;Distance=4754;DiscordantMatePairAlignments=63;LeftRepeat=;RightRepeat=;LeftGenes=NM_001006655:+;NM_015398:+;RightGenes=;XRef=;Frequency=0.88
chr4	CG	SV	187330481	187330865	63	+	.	ID=4305;Type=deletion;Left=chr4:187330481-187330865;Right=chr4:187335235-187335625
chr4	CG	SV	187335235	187335625	63	+	.	ID=4305;Type=deletion;Left=chr4:187330481-187330865;Right=chr4:187335235-187335625
chr4	CG	SV	190295008	190301856	101	.	.	ID=4302;Type=deletion;Left=chr4:190295008-190295598+;Right=chr4:190301282-190301856+;Distance=6274;DiscordantMatePairAlignments=101;LeftRepeat=L1P1:LINE:L1;RightRepeat=THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67851464 (chr4:190294992-190301266);Frequency=0.94
chr4	CG	SV	190295008	190295598	101	+	.	ID=4302;Type=deletion;Left=chr4:190295008-190295598;Right=chr4:190301282-190301856
chr4	CG	SV	190301282	190301856	101	+	.	ID=4302;Type=deletion;Left=chr4:190295008-190295598;Right=chr4:190301282-190301856
chr4	CG	SV	190342501	190343730	104	.	.	ID=4301;Type=deletion;Left=chr4:190342501-190343055+;Right=chr4:190343307-190343730+;Distance=806;DiscordantMatePairAlignments=104;LeftRepeat=Self chain;Tandem period 161;Tandem period 54;RightRepeat=Self chain;Tandem period 161;Tandem period 54;LeftGenes=;RightGenes=;XRef=rs66954860 (chr4:190342578-190343277);Frequency=1.00
chr4	CG	SV	190342501	190343055	104	+	.	ID=4301;Type=deletion;Left=chr4:190342501-190343055;Right=chr4:190343307-190343730
chr4	CG	SV	190343307	190343730	104	+	.	ID=4301;Type=deletion;Left=chr4:190342501-190343055;Right=chr4:190343307-190343730
chr4	CG	SV	190715583	190716027	22	.	.	ID=1687;Type=tandem-duplication;Left=chr4:190715583-190715805-;Right=chr4:190715949-190716027-;Distance=222;DiscordantMatePairAlignments=22;LeftRepeat=SegDup;Tandem period 16;RightRepeat=SegDup;Tandem period 16;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190715583	190715805	22	-	.	ID=1687;Type=tandem-duplication;Left=chr4:190715583-190715805;Right=chr4:190715949-190716027
chr4	CG	SV	190715949	190716027	22	-	.	ID=1687;Type=tandem-duplication;Left=chr4:190715583-190715805;Right=chr4:190715949-190716027
chr4	CG	SV	190772499	190775693	19	.	.	ID=4298;Type=deletion;Left=chr4:190772499-190772931+;Right=chr4:190775357-190775693+;Distance=2858;DiscordantMatePairAlignments=19;LeftRepeat=SegDup;Self chain;RightRepeat=LTR12C:LTR:ERV1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190772499	190772931	19	+	.	ID=4298;Type=deletion;Left=chr4:190772499-190772931;Right=chr4:190775357-190775693
chr4	CG	SV	190775357	190775693	19	+	.	ID=4298;Type=deletion;Left=chr4:190772499-190772931;Right=chr4:190775357-190775693
chr4	CG	SV	190822807	190850110	554	.	.	ID=5571;Type=probable-inversion;Left=chr4:190822807-190823603+;Right=chr4:190849463-190850110-;Distance=27303;DiscordantMatePairAlignments=554;LeftRepeat=Self chain;RightRepeat=LTR12C:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190822807	190823603	554	+	.	ID=5571;Type=probable-inversion;Left=chr4:190822807-190823603;Right=chr4:190849463-190850110
chr4	CG	SV	190849463	190850110	554	+	.	ID=5571;Type=probable-inversion;Left=chr4:190822807-190823603;Right=chr4:190849463-190850110
chr4	CG	SV	190843851	190847768	18	.	.	ID=4295;Type=deletion;Left=chr4:190843851-190844593+;Right=chr4:190847117-190847768+;Distance=3266;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;Tandem period 110;Tandem period 57;RightRepeat=SegDup;Self chain;Tandem period 110;Tandem period 53;Tandem period 57;LeftGenes=;RightGenes=;XRef=rs36221505 (chr4:190843981-190847294);Frequency=1.00
chr4	CG	SV	190843851	190844593	18	+	.	ID=4295;Type=deletion;Left=chr4:190843851-190844593;Right=chr4:190847117-190847768
chr4	CG	SV	190847117	190847768	18	+	.	ID=4295;Type=deletion;Left=chr4:190843851-190844593;Right=chr4:190847117-190847768
chr4	CG	SV	190861634	190862526	15	.	.	ID=4294;Type=deletion;Left=chr4:190861634-190862254+;Right=chr4:190861981-190862526+;Distance=347;DiscordantMatePairAlignments=15;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6148861 (chr4:190861622-190861969);Frequency=1.00
chr4	CG	SV	190861634	190862254	15	+	.	ID=4294;Type=deletion;Left=chr4:190861634-190862254;Right=chr4:190861981-190862526
chr4	CG	SV	190861981	190862526	15	+	.	ID=4294;Type=deletion;Left=chr4:190861634-190862254;Right=chr4:190861981-190862526
chr4	CG	SV	190893447	190894779	60	.	.	ID=4293;Type=deletion;Left=chr4:190893447-190893836+;Right=chr4:190894523-190894779+;Distance=1076;DiscordantMatePairAlignments=60;LeftRepeat=Self chain;Tandem period 105;Tandem period 35;Tandem period 70;RightRepeat=Self chain;Tandem period 105;Tandem period 35;Tandem period 70;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190893447	190893836	60	+	.	ID=4293;Type=deletion;Left=chr4:190893447-190893836;Right=chr4:190894523-190894779
chr4	CG	SV	190894523	190894779	60	+	.	ID=4293;Type=deletion;Left=chr4:190893447-190893836;Right=chr4:190894523-190894779
chr4	CG	SV	190899926	190901286	166	.	.	ID=4292;Type=deletion;Left=chr4:190899926-190900517+;Right=chr4:190900721-190901286+;Distance=795;DiscordantMatePairAlignments=166;LeftRepeat=L1PBa:LINE:L1;Self chain;RightRepeat=L1PBa:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	190899926	190900517	166	+	.	ID=4292;Type=deletion;Left=chr4:190899926-190900517;Right=chr4:190900721-190901286
chr4	CG	SV	190900721	190901286	166	+	.	ID=4292;Type=deletion;Left=chr4:190899926-190900517;Right=chr4:190900721-190901286
chr4	CG	SV	191035650	191038292	79	.	.	ID=4290;Type=deletion;Left=chr4:191035650-191036183+;Right=chr4:191037595-191038292+;Distance=1945;DiscordantMatePairAlignments=79;LeftRepeat=L1PA4:LINE:L1;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr4	CG	SV	191035650	191036183	79	+	.	ID=4290;Type=deletion;Left=chr4:191035650-191036183;Right=chr4:191037595-191038292
chr4	CG	SV	191037595	191038292	79	+	.	ID=4290;Type=deletion;Left=chr4:191035650-191036183;Right=chr4:191037595-191038292
chr4	CG	SV	191121913	191128467	10	.	.	ID=4288;Type=deletion;Left=chr4:191121913-191122216+;Right=chr4:191128120-191128467+;Distance=6207;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr4	CG	SV	191121913	191122216	10	+	.	ID=4288;Type=deletion;Left=chr4:191121913-191122216;Right=chr4:191128120-191128467
chr4	CG	SV	191128120	191128467	10	+	.	ID=4288;Type=deletion;Left=chr4:191121913-191122216;Right=chr4:191128120-191128467
chr4	CG	SV	191129525	191129916	11	-	.	ID=522;Type=interchromosomal;Left=chr4:191129525-191129916-;Right=chr9:67915726-67916093+;Distance=;DiscordantMatePairAlignments=11;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=LTR53:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	67915726	67916093	11	-	.	ID=522;Type=interchromosomal;Left=chr4:191129525-191129916-;Right=chr9:67915726-67916093+;Distance=;DiscordantMatePairAlignments=11;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=LTR53:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr4	CG	SV	191179111	191179707	30	-	.	ID=1357;Type=interchromosomal;Left=chr4:191179111-191179707-;Right=chr18:102140-102542-;Distance=;DiscordantMatePairAlignments=30;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	102140	102542	30	-	.	ID=1357;Type=interchromosomal;Left=chr4:191179111-191179707-;Right=chr18:102140-102542-;Distance=;DiscordantMatePairAlignments=30;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	540064	541099	54	.	.	ID=4284;Type=deletion;Left=chr5:540064-540762+;Right=chr5:540650-541099+;Distance=586;DiscordantMatePairAlignments=54;LeftRepeat=(CACAC)n:Simple_repeat:Simple_repeat;(CACCG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 15;Tandem period 38;Tandem period 68;RightRepeat=(CACCG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 15;Tandem period 68;LeftGenes=NM_004174:-;RightGenes=NM_004174:-;XRef=rs67969321 (chr5:540079-540691);Frequency=0.88
chr5	CG	SV	540064	540762	54	+	.	ID=4284;Type=deletion;Left=chr5:540064-540762;Right=chr5:540650-541099
chr5	CG	SV	540650	541099	54	+	.	ID=4284;Type=deletion;Left=chr5:540064-540762;Right=chr5:540650-541099
chr5	CG	SV	1291456	1292303	11	.	.	ID=4280;Type=deletion;Left=chr5:1291456-1292066+;Right=chr5:1291791-1292303+;Distance=335;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 112;Tandem period 149;Tandem period 37;RightRepeat=Self chain;LeftGenes=NM_182632:+;RightGenes=NM_182632:+;XRef=rs72365262 (chr5:1291456-1291791);Frequency=0.53
chr5	CG	SV	1291456	1292066	11	+	.	ID=4280;Type=deletion;Left=chr5:1291456-1292066;Right=chr5:1291791-1292303
chr5	CG	SV	1291791	1292303	11	+	.	ID=4280;Type=deletion;Left=chr5:1291456-1292066;Right=chr5:1291791-1292303
chr5	CG	SV	1716891	1717882	14	.	.	ID=4279;Type=deletion;Left=chr5:1716891-1717889+;Right=chr5:1717347-1717882+;Distance=456;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;Tandem period 38;LeftGenes=;RightGenes=;XRef=rs66494513 (chr5:1716815-1717347);Frequency=0.82
chr5	CG	SV	1716891	1717889	14	+	.	ID=4279;Type=deletion;Left=chr5:1716891-1717889;Right=chr5:1717347-1717882
chr5	CG	SV	1717347	1717882	14	+	.	ID=4279;Type=deletion;Left=chr5:1716891-1717889;Right=chr5:1717347-1717882
chr5	CG	SV	1977591	1979131	154	.	.	ID=4278;Type=deletion;Left=chr5:1977591-1978373+;Right=chr5:1978203-1979131+;Distance=612;DiscordantMatePairAlignments=154;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72120772 (chr5:1977590-1978202);Frequency=0.94
chr5	CG	SV	1977591	1978373	154	+	.	ID=4278;Type=deletion;Left=chr5:1977591-1978373;Right=chr5:1978203-1979131
chr5	CG	SV	1978203	1979131	154	+	.	ID=4278;Type=deletion;Left=chr5:1977591-1978373;Right=chr5:1978203-1979131
chr5	CG	SV	2021405	2025348	83	.	.	ID=4277;Type=deletion;Left=chr5:2021405-2022049+;Right=chr5:2024593-2025348+;Distance=3188;DiscordantMatePairAlignments=83;LeftRepeat=;RightRepeat=L1HS:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71809671 (chr5:2021413-2024601);Frequency=1.00
chr5	CG	SV	2021405	2022049	83	+	.	ID=4277;Type=deletion;Left=chr5:2021405-2022049;Right=chr5:2024593-2025348
chr5	CG	SV	2024593	2025348	83	+	.	ID=4277;Type=deletion;Left=chr5:2021405-2022049;Right=chr5:2024593-2025348
chr5	CG	SV	2135232	2136205	16	.	.	ID=4276;Type=deletion;Left=chr5:2135232-2135644+;Right=chr5:2135925-2136205+;Distance=693;DiscordantMatePairAlignments=16;LeftRepeat=L1MC3:LINE:L1;Tandem period 63;RightRepeat=L1MC3:LINE:L1;Tandem period 63;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr5	CG	SV	2135232	2135644	16	+	.	ID=4276;Type=deletion;Left=chr5:2135232-2135644;Right=chr5:2135925-2136205
chr5	CG	SV	2135925	2136205	16	+	.	ID=4276;Type=deletion;Left=chr5:2135232-2135644;Right=chr5:2135925-2136205
chr5	CG	SV	2915513	2916784	45	.	.	ID=4273;Type=deletion;Left=chr5:2915513-2915816+;Right=chr5:2916435-2916784+;Distance=922;DiscordantMatePairAlignments=45;LeftRepeat=(CCCCAG)n:Simple_repeat:Simple_repeat;Tandem AGCCAC;Tandem period 24;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr5	CG	SV	2915513	2915816	45	+	.	ID=4273;Type=deletion;Left=chr5:2915513-2915816;Right=chr5:2916435-2916784
chr5	CG	SV	2916435	2916784	45	+	.	ID=4273;Type=deletion;Left=chr5:2915513-2915816;Right=chr5:2916435-2916784
chr5	CG	SV	9464774	9465558	10	.	.	ID=4267;Type=deletion;Left=chr5:9464774-9465436+;Right=chr5:9465088-9465558+;Distance=314;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_003966:-;RightGenes=NM_003966:-;XRef=rs10530022 (chr5:9464760-9465074);Frequency=1.00
chr5	CG	SV	9464774	9465436	10	+	.	ID=4267;Type=deletion;Left=chr5:9464774-9465436;Right=chr5:9465088-9465558
chr5	CG	SV	9465088	9465558	10	+	.	ID=4267;Type=deletion;Left=chr5:9464774-9465436;Right=chr5:9465088-9465558
chr5	CG	SV	10326597	10328699	46	.	.	ID=4266;Type=deletion;Left=chr5:10326597-10327266+;Right=chr5:10328441-10328699+;Distance=1844;DiscordantMatePairAlignments=46;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72183657 (chr5:10326200-10328044);Frequency=1.00
chr5	CG	SV	10326597	10327266	46	+	.	ID=4266;Type=deletion;Left=chr5:10326597-10327266;Right=chr5:10328441-10328699
chr5	CG	SV	10328441	10328699	46	+	.	ID=4266;Type=deletion;Left=chr5:10326597-10327266;Right=chr5:10328441-10328699
chr5	CG	SV	10627956	10628996	17	.	.	ID=4265;Type=deletion;Left=chr5:10627956-10628392+;Right=chr5:10628301-10628996+;Distance=345;DiscordantMatePairAlignments=17;LeftRepeat=AluJo:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_001164440:+;RightGenes=NM_001164440:+;XRef=;Frequency=1.00
chr5	CG	SV	10627956	10628392	17	+	.	ID=4265;Type=deletion;Left=chr5:10627956-10628392;Right=chr5:10628301-10628996
chr5	CG	SV	10628301	10628996	17	+	.	ID=4265;Type=deletion;Left=chr5:10627956-10628392;Right=chr5:10628301-10628996
chr5	CG	SV	10692157	10693870	204	.	.	ID=4264;Type=deletion;Left=chr5:10692157-10692738+;Right=chr5:10693273-10693870+;Distance=1116;DiscordantMatePairAlignments=204;LeftRepeat=(CGCGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 31;RightRepeat=Self chain;Tandem period 31;LeftGenes=NM_001164440:+;RightGenes=NM_001164440:+;XRef=;Frequency=0.59
chr5	CG	SV	10692157	10692738	204	+	.	ID=4264;Type=deletion;Left=chr5:10692157-10692738;Right=chr5:10693273-10693870
chr5	CG	SV	10693273	10693870	204	+	.	ID=4264;Type=deletion;Left=chr5:10692157-10692738;Right=chr5:10693273-10693870
chr5	CG	SV	12864019	12874143	162	.	.	ID=4262;Type=deletion;Left=chr5:12864019-12864435+;Right=chr5:12873525-12874143+;Distance=9506;DiscordantMatePairAlignments=162;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66987566 (chr5:12864019-12873525);Frequency=0.88
chr5	CG	SV	12864019	12864435	162	+	.	ID=4262;Type=deletion;Left=chr5:12864019-12864435;Right=chr5:12873525-12874143
chr5	CG	SV	12873525	12874143	162	+	.	ID=4262;Type=deletion;Left=chr5:12864019-12864435;Right=chr5:12873525-12874143
chr5	CG	SV	13469596	13476530	331	.	.	ID=4261;Type=deletion;Left=chr5:13469596-13470255+;Right=chr5:13475858-13476530+;Distance=6262;DiscordantMatePairAlignments=331;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr5	CG	SV	13469596	13470255	331	+	.	ID=4261;Type=deletion;Left=chr5:13469596-13470255;Right=chr5:13475858-13476530
chr5	CG	SV	13475858	13476530	331	+	.	ID=4261;Type=deletion;Left=chr5:13469596-13470255;Right=chr5:13475858-13476530
chr5	CG	SV	17652611	17666825	17	.	.	ID=4257;Type=deletion;Left=chr5:17652611-17653178+;Right=chr5:17666709-17666825+;Distance=14098;DiscordantMatePairAlignments=17;LeftRepeat=SegDup;Self chain;RightRepeat=Charlie2a:DNA:MER1_type;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	17652611	17653178	17	+	.	ID=4257;Type=deletion;Left=chr5:17652611-17653178;Right=chr5:17666709-17666825
chr5	CG	SV	17666709	17666825	17	+	.	ID=4257;Type=deletion;Left=chr5:17652611-17653178;Right=chr5:17666709-17666825
chr5	CG	SV	23049572	23050109	71	-	.	ID=1279;Type=complex;Left=chr5:23049572-23050109-;Right=chr22:27395551-27396108-;Distance=;DiscordantMatePairAlignments=71;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_001145418:-;XRef=;Frequency=0.00
chr22	CG	SV	27395551	27396108	71	-	.	ID=1279;Type=complex;Left=chr5:23049572-23050109-;Right=chr22:27395551-27396108-;Distance=;DiscordantMatePairAlignments=71;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_001145418:-;XRef=;Frequency=0.00
chr5	CG	SV	29105074	29105382	27	.	.	ID=5570;Type=probable-inversion;Left=chr5:29105074-29105744+;Right=chr5:29105098-29105382-;Distance=308;DiscordantMatePairAlignments=27;LeftRepeat=;RightRepeat=THE1-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr5	CG	SV	29105074	29105744	27	+	.	ID=5570;Type=probable-inversion;Left=chr5:29105074-29105744;Right=chr5:29105098-29105382
chr5	CG	SV	29105098	29105382	27	+	.	ID=5570;Type=probable-inversion;Left=chr5:29105074-29105744;Right=chr5:29105098-29105382
chr5	CG	SV	35226907	35227929	14	.	.	ID=4250;Type=deletion;Left=chr5:35226907-35227360+;Right=chr5:35227244-35227929+;Distance=337;DiscordantMatePairAlignments=14;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_000949:-;RightGenes=NM_000949:-;XRef=;Frequency=0.71
chr5	CG	SV	35226907	35227360	14	+	.	ID=4250;Type=deletion;Left=chr5:35226907-35227360;Right=chr5:35227244-35227929
chr5	CG	SV	35227244	35227929	14	+	.	ID=4250;Type=deletion;Left=chr5:35226907-35227360;Right=chr5:35227244-35227929
chr5	CG	SV	53158520	53161242	32	.	.	ID=5566;Type=probable-inversion;Left=chr5:53158520-53158668+;Right=chr5:53160728-53161242-;Distance=2722;DiscordantMatePairAlignments=32;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr5	CG	SV	53158520	53158668	32	+	.	ID=5566;Type=probable-inversion;Left=chr5:53158520-53158668;Right=chr5:53160728-53161242
chr5	CG	SV	53160728	53161242	32	+	.	ID=5566;Type=probable-inversion;Left=chr5:53158520-53158668;Right=chr5:53160728-53161242
chr5	CG	SV	55465022	55466525	36	.	.	ID=4241;Type=deletion;Left=chr5:55465022-55465615+;Right=chr5:55466165-55466525+;Distance=1143;DiscordantMatePairAlignments=36;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_024669:-;RightGenes=NM_024669:-;XRef=;Frequency=0.65
chr5	CG	SV	55465022	55465615	36	+	.	ID=4241;Type=deletion;Left=chr5:55465022-55465615;Right=chr5:55466165-55466525
chr5	CG	SV	55466165	55466525	36	+	.	ID=4241;Type=deletion;Left=chr5:55465022-55465615;Right=chr5:55466165-55466525
chr5	CG	SV	57359235	57370173	80	.	.	ID=4239;Type=deletion;Left=chr5:57359235-57359890+;Right=chr5:57369537-57370173+;Distance=10302;DiscordantMatePairAlignments=80;LeftRepeat=;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr5	CG	SV	57359235	57359890	80	+	.	ID=4239;Type=deletion;Left=chr5:57359235-57359890;Right=chr5:57369537-57370173
chr5	CG	SV	57369537	57370173	80	+	.	ID=4239;Type=deletion;Left=chr5:57359235-57359890;Right=chr5:57369537-57370173
chr5	CG	SV	57715743	57722551	204	.	.	ID=4238;Type=deletion;Left=chr5:57715743-57716358+;Right=chr5:57721851-57722551+;Distance=6108;DiscordantMatePairAlignments=204;LeftRepeat=;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Tandem A;LeftGenes=;RightGenes=;XRef=rs67036290 (chr5:57715758-57721867);Frequency=1.00
chr5	CG	SV	57715743	57716358	204	+	.	ID=4238;Type=deletion;Left=chr5:57715743-57716358;Right=chr5:57721851-57722551
chr5	CG	SV	57721851	57722551	204	+	.	ID=4238;Type=deletion;Left=chr5:57715743-57716358;Right=chr5:57721851-57722551
chr5	CG	SV	60037463	60039981	212	.	.	ID=4237;Type=deletion;Left=chr5:60037463-60038082+;Right=chr5:60039424-60039981+;Distance=1961;DiscordantMatePairAlignments=212;LeftRepeat=MLT1E3:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67780732 (chr5:60037461-60039422);Frequency=0.88
chr5	CG	SV	60037463	60038082	212	+	.	ID=4237;Type=deletion;Left=chr5:60037463-60038082;Right=chr5:60039424-60039981
chr5	CG	SV	60039424	60039981	212	+	.	ID=4237;Type=deletion;Left=chr5:60037463-60038082;Right=chr5:60039424-60039981
chr5	CG	SV	65063842	65066604	132	.	.	ID=4234;Type=deletion;Left=chr5:65063842-65064621+;Right=chr5:65066139-65066604+;Distance=2297;DiscordantMatePairAlignments=132;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_020726:+;RightGenes=NM_020726:+;XRef=rs71731346 (chr5:65063855-65066152);Frequency=0.65
chr5	CG	SV	65063842	65064621	132	+	.	ID=4234;Type=deletion;Left=chr5:65063842-65064621;Right=chr5:65066139-65066604
chr5	CG	SV	65066139	65066604	132	+	.	ID=4234;Type=deletion;Left=chr5:65063842-65064621;Right=chr5:65066139-65066604
chr5	CG	SV	68759801	68760795	10	.	.	ID=4232;Type=deletion;Left=chr5:68759801-68760379+;Right=chr5:68760252-68760795+;Distance=451;DiscordantMatePairAlignments=10;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=NM_001038603:+;NM_144724:+;NR_029426:-;RightGenes=NM_001038603:+;NM_144724:+;NR_029426:-;XRef=;Frequency=0.94
chr5	CG	SV	68759801	68760379	10	+	.	ID=4232;Type=deletion;Left=chr5:68759801-68760379;Right=chr5:68760252-68760795
chr5	CG	SV	68760252	68760795	10	+	.	ID=4232;Type=deletion;Left=chr5:68759801-68760379;Right=chr5:68760252-68760795
chr5	CG	SV	78145555	78148181	113	.	.	ID=4227;Type=deletion;Left=chr5:78145555-78146091+;Right=chr5:78147626-78148181+;Distance=2071;DiscordantMatePairAlignments=113;LeftRepeat=;RightRepeat=;LeftGenes=NM_000046:-;RightGenes=NM_000046:-;NM_198709:-;XRef=rs72356644 (chr5:78145555-78147626);Frequency=0.35
chr5	CG	SV	78145555	78146091	113	+	.	ID=4227;Type=deletion;Left=chr5:78145555-78146091;Right=chr5:78147626-78148181
chr5	CG	SV	78147626	78148181	113	+	.	ID=4227;Type=deletion;Left=chr5:78145555-78146091;Right=chr5:78147626-78148181
chr5	CG	SV	83984111	83991273	14	.	.	ID=4220;Type=deletion;Left=chr5:83984111-83984689+;Right=chr5:83991073-83991273+;Distance=6962;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr5	CG	SV	83984111	83984689	14	+	.	ID=4220;Type=deletion;Left=chr5:83984111-83984689;Right=chr5:83991073-83991273
chr5	CG	SV	83991073	83991273	14	+	.	ID=4220;Type=deletion;Left=chr5:83984111-83984689;Right=chr5:83991073-83991273
chr5	CG	SV	86718271	86834076	98	.	.	ID=1678;Type=tandem-duplication;Left=chr5:86718271-86718801-;Right=chr5:86833370-86834076-;Distance=115275;DiscordantMatePairAlignments=98;LeftRepeat=;RightRepeat=;LeftGenes=NM_002890:+;NM_022650:+;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	86718271	86718801	98	-	.	ID=1678;Type=tandem-duplication;Left=chr5:86718271-86718801;Right=chr5:86833370-86834076
chr5	CG	SV	86833370	86834076	98	-	.	ID=1678;Type=tandem-duplication;Left=chr5:86718271-86718801;Right=chr5:86833370-86834076
chr5	CG	SV	87414638	87418420	22	.	.	ID=4219;Type=deletion;Left=chr5:87414638-87414972+;Right=chr5:87417822-87418420+;Distance=3184;DiscordantMatePairAlignments=22;LeftRepeat=L1ME4a:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71648095 (chr5:87414638-87417822);Frequency=0.47
chr5	CG	SV	87414638	87414972	22	+	.	ID=4219;Type=deletion;Left=chr5:87414638-87414972;Right=chr5:87417822-87418420
chr5	CG	SV	87417822	87418420	22	+	.	ID=4219;Type=deletion;Left=chr5:87414638-87414972;Right=chr5:87417822-87418420
chr5	CG	SV	90535531	90538456	242	.	.	ID=4215;Type=deletion;Left=chr5:90535531-90536264+;Right=chr5:90537854-90538456+;Distance=2323;DiscordantMatePairAlignments=242;LeftRepeat=L1ME2:LINE:L1;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=;RightGenes=;XRef=rs72404559 (chr5:90535531-90537854);Frequency=1.00
chr5	CG	SV	90535531	90536264	242	+	.	ID=4215;Type=deletion;Left=chr5:90535531-90536264;Right=chr5:90537854-90538456
chr5	CG	SV	90537854	90538456	242	+	.	ID=4215;Type=deletion;Left=chr5:90535531-90536264;Right=chr5:90537854-90538456
chr5	CG	SV	95369082	95370063	10	.	.	ID=4211;Type=deletion;Left=chr5:95369082-95369602+;Right=chr5:95369436-95370063+;Distance=354;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	95369082	95369602	10	+	.	ID=4211;Type=deletion;Left=chr5:95369082-95369602;Right=chr5:95369436-95370063
chr5	CG	SV	95369436	95370063	10	+	.	ID=4211;Type=deletion;Left=chr5:95369082-95369602;Right=chr5:95369436-95370063
chr5	CG	SV	98294024	98309748	92	.	.	ID=4210;Type=deletion;Left=chr5:98294024-98294546+;Right=chr5:98309135-98309748+;Distance=15111;DiscordantMatePairAlignments=92;LeftRepeat=;RightRepeat=HERV16:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	98294024	98294546	92	+	.	ID=4210;Type=deletion;Left=chr5:98294024-98294546;Right=chr5:98309135-98309748
chr5	CG	SV	98309135	98309748	92	+	.	ID=4210;Type=deletion;Left=chr5:98294024-98294546;Right=chr5:98309135-98309748
chr5	CG	SV	101108334	101372266	32	.	.	ID=4208;Type=deletion;Left=chr5:101108334-101108809+;Right=chr5:101371803-101372266+;Distance=263469;DiscordantMatePairAlignments=32;LeftRepeat=L1P4:LINE:L1;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	101108334	101108809	32	+	.	ID=4208;Type=deletion;Left=chr5:101108334-101108809;Right=chr5:101371803-101372266
chr5	CG	SV	101371803	101372266	32	+	.	ID=4208;Type=deletion;Left=chr5:101108334-101108809;Right=chr5:101371803-101372266
chr5	CG	SV	106352650	106355023	187	.	.	ID=4204;Type=deletion;Left=chr5:106352650-106353418+;Right=chr5:106354342-106355023+;Distance=1692;DiscordantMatePairAlignments=187;LeftRepeat=LTR67:LTR:ERVL;RightRepeat=MER65A:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs72419952 (chr5:106352650-106354329);Frequency=0.65
chr5	CG	SV	106352650	106353418	187	+	.	ID=4204;Type=deletion;Left=chr5:106352650-106353418;Right=chr5:106354342-106355023
chr5	CG	SV	106354342	106355023	187	+	.	ID=4204;Type=deletion;Left=chr5:106352650-106353418;Right=chr5:106354342-106355023
chr5	CG	SV	115158366	115159401	13	.	.	ID=4200;Type=deletion;Left=chr5:115158366-115158764+;Right=chr5:115158715-115159401+;Distance=349;DiscordantMatePairAlignments=13;LeftRepeat=MER5A:DNA:MER1_type;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	115158366	115158764	13	+	.	ID=4200;Type=deletion;Left=chr5:115158366-115158764;Right=chr5:115158715-115159401
chr5	CG	SV	115158715	115159401	13	+	.	ID=4200;Type=deletion;Left=chr5:115158366-115158764;Right=chr5:115158715-115159401
chr5	CG	SV	115373974	115378961	55	.	.	ID=526;Type=probable-inversion;Left=chr5:115373974-115374637-;Right=chr5:115378804-115378961+;Distance=4167;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=;LeftGenes=NM_173800:+;RightGenes=NM_173800:+;XRef=;Frequency=0.71
chr5	CG	SV	115373974	115374637	55	-	.	ID=526;Type=probable-inversion;Left=chr5:115373974-115374637;Right=chr5:115378804-115378961
chr5	CG	SV	115378804	115378961	55	-	.	ID=526;Type=probable-inversion;Left=chr5:115373974-115374637;Right=chr5:115378804-115378961
chr5	CG	SV	119408045	119411049	109	.	.	ID=4195;Type=deletion;Left=chr5:119408045-119408565+;Right=chr5:119410579-119411049+;Distance=2534;DiscordantMatePairAlignments=109;LeftRepeat=;RightRepeat=L1ME3A:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72401694 (chr5:119408045-119410576);Frequency=0.88
chr5	CG	SV	119408045	119408565	109	+	.	ID=4195;Type=deletion;Left=chr5:119408045-119408565;Right=chr5:119410579-119411049
chr5	CG	SV	119410579	119411049	109	+	.	ID=4195;Type=deletion;Left=chr5:119408045-119408565;Right=chr5:119410579-119411049
chr5	CG	SV	120253252	120496341	40	.	.	ID=4194;Type=deletion;Left=chr5:120253252-120253787+;Right=chr5:120495940-120496341+;Distance=242688;DiscordantMatePairAlignments=40;LeftRepeat=L1P4:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	120253252	120253787	40	+	.	ID=4194;Type=deletion;Left=chr5:120253252-120253787;Right=chr5:120495940-120496341
chr5	CG	SV	120495940	120496341	40	+	.	ID=4194;Type=deletion;Left=chr5:120253252-120253787;Right=chr5:120495940-120496341
chr5	CG	SV	121604030	121609195	43	.	.	ID=4193;Type=deletion;Left=chr5:121604030-121604591+;Right=chr5:121608723-121609195+;Distance=4693;DiscordantMatePairAlignments=43;LeftRepeat=L1HS:LINE:L1;L1MA9:LINE:L1;RightRepeat=L1MA9:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr5	CG	SV	121604030	121604591	43	+	.	ID=4193;Type=deletion;Left=chr5:121604030-121604591;Right=chr5:121608723-121609195
chr5	CG	SV	121608723	121609195	43	+	.	ID=4193;Type=deletion;Left=chr5:121604030-121604591;Right=chr5:121608723-121609195
chr5	CG	SV	121952170	121955872	117	.	.	ID=4192;Type=deletion;Left=chr5:121952170-121952765+;Right=chr5:121955333-121955872+;Distance=3163;DiscordantMatePairAlignments=117;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	121952170	121952765	117	+	.	ID=4192;Type=deletion;Left=chr5:121952170-121952765;Right=chr5:121955333-121955872
chr5	CG	SV	121955333	121955872	117	+	.	ID=4192;Type=deletion;Left=chr5:121952170-121952765;Right=chr5:121955333-121955872
chr5	CG	SV	126486277	126487503	33	.	.	ID=4189;Type=deletion;Left=chr5:126486277-126486736+;Right=chr5:126486715-126487503+;Distance=438;DiscordantMatePairAlignments=33;LeftRepeat=HERV16:LTR:ERVL;RightRepeat=HERV16:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs67355812 (chr5:126486277-126486715);Frequency=0.82
chr5	CG	SV	126486277	126486736	33	+	.	ID=4189;Type=deletion;Left=chr5:126486277-126486736;Right=chr5:126486715-126487503
chr5	CG	SV	126486715	126487503	33	+	.	ID=4189;Type=deletion;Left=chr5:126486277-126486736;Right=chr5:126486715-126487503
chr5	CG	SV	127200231	127201832	28	.	.	ID=4188;Type=deletion;Left=chr5:127200231-127200857+;Right=chr5:127201181-127201832+;Distance=950;DiscordantMatePairAlignments=28;LeftRepeat=THE1C-int:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72270848 (chr5:127200229-127201179);Frequency=0.88
chr5	CG	SV	127200231	127200857	28	+	.	ID=4188;Type=deletion;Left=chr5:127200231-127200857;Right=chr5:127201181-127201832
chr5	CG	SV	127201181	127201832	28	+	.	ID=4188;Type=deletion;Left=chr5:127200231-127200857;Right=chr5:127201181-127201832
chr5	CG	SV	132946879	132953593	183	.	.	ID=4187;Type=deletion;Left=chr5:132946879-132947474+;Right=chr5:132952905-132953593+;Distance=6026;DiscordantMatePairAlignments=183;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_015082:-;RightGenes=NM_015082:-;XRef=rs66911382 (chr5:132946863-132952889);Frequency=0.24
chr5	CG	SV	132946879	132947474	183	+	.	ID=4187;Type=deletion;Left=chr5:132946879-132947474;Right=chr5:132952905-132953593
chr5	CG	SV	132952905	132953593	183	+	.	ID=4187;Type=deletion;Left=chr5:132946879-132947474;Right=chr5:132952905-132953593
chr5	CG	SV	135143087	135149283	114	.	.	ID=4182;Type=deletion;Left=chr5:135143087-135143793+;Right=chr5:135148625-135149283+;Distance=5538;DiscordantMatePairAlignments=114;LeftRepeat=SATR1:Satellite:Satellite;Self chain;Tandem period 76;RightRepeat=SATR1:Satellite:Satellite;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr5	CG	SV	135143087	135143793	114	+	.	ID=4182;Type=deletion;Left=chr5:135143087-135143793;Right=chr5:135148625-135149283
chr5	CG	SV	135148625	135149283	114	+	.	ID=4182;Type=deletion;Left=chr5:135143087-135143793;Right=chr5:135148625-135149283
chr5	CG	SV	136882610	136884785	126	.	.	ID=4181;Type=deletion;Left=chr5:136882610-136883256+;Right=chr5:136884326-136884785+;Distance=1716;DiscordantMatePairAlignments=126;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg/x:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67020614 (chr5:136882557-136884273);Frequency=1.00
chr5	CG	SV	136882610	136883256	126	+	.	ID=4181;Type=deletion;Left=chr5:136882610-136883256;Right=chr5:136884326-136884785
chr5	CG	SV	136884326	136884785	126	+	.	ID=4181;Type=deletion;Left=chr5:136882610-136883256;Right=chr5:136884326-136884785
chr5	CG	SV	137050477	137052557	143	.	.	ID=4180;Type=deletion;Left=chr5:137050477-137051103+;Right=chr5:137051801-137052557+;Distance=1324;DiscordantMatePairAlignments=143;LeftRepeat=SVA:Other:Other;RightRepeat=;LeftGenes=NM_017415:-;RightGenes=NM_017415:-;XRef=rs72257455 (chr5:137050461-137051785);Frequency=0.82
chr5	CG	SV	137050477	137051103	143	+	.	ID=4180;Type=deletion;Left=chr5:137050477-137051103;Right=chr5:137051801-137052557
chr5	CG	SV	137051801	137052557	143	+	.	ID=4180;Type=deletion;Left=chr5:137050477-137051103;Right=chr5:137051801-137052557
chr5	CG	SV	142841383	142846863	195	.	.	ID=4176;Type=deletion;Left=chr5:142841383-142841923+;Right=chr5:142846270-142846863+;Distance=4887;DiscordantMatePairAlignments=195;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr5	CG	SV	142841383	142841923	195	+	.	ID=4176;Type=deletion;Left=chr5:142841383-142841923;Right=chr5:142846270-142846863
chr5	CG	SV	142846270	142846863	195	+	.	ID=4176;Type=deletion;Left=chr5:142841383-142841923;Right=chr5:142846270-142846863
chr5	CG	SV	143492299	143495244	270	.	.	ID=1676;Type=distal-duplication;Left=chr5:143492299-143492681-;Right=chr5:143494562-143495244-;Distance=2563;DiscordantMatePairAlignments=270;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	143492299	143492681	270	-	.	ID=1676;Type=distal-duplication;Left=chr5:143492299-143492681;Right=chr5:143494562-143495244
chr5	CG	SV	143494562	143495244	270	-	.	ID=1676;Type=distal-duplication;Left=chr5:143492299-143492681;Right=chr5:143494562-143495244
chr5	CG	SV	143493060	143495925	312	.	.	ID=4175;Type=distal-duplication;Left=chr5:143493060-143493444+;Right=chr5:143495240-143495925+;Distance=2180;DiscordantMatePairAlignments=312;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr5	CG	SV	143493060	143493444	312	+	.	ID=4175;Type=distal-duplication;Left=chr5:143493060-143493444;Right=chr5:143495240-143495925
chr5	CG	SV	143495240	143495925	312	+	.	ID=4175;Type=distal-duplication;Left=chr5:143493060-143493444;Right=chr5:143495240-143495925
chr5	CG	SV	144852099	144853552	94	.	.	ID=4174;Type=deletion;Left=chr5:144852099-144852614+;Right=chr5:144853000-144853552+;Distance=901;DiscordantMatePairAlignments=94;LeftRepeat=L1MA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67005411 (chr5:144852097-144852998);Frequency=0.71
chr5	CG	SV	144852099	144852614	94	+	.	ID=4174;Type=deletion;Left=chr5:144852099-144852614;Right=chr5:144853000-144853552
chr5	CG	SV	144853000	144853552	94	+	.	ID=4174;Type=deletion;Left=chr5:144852099-144852614;Right=chr5:144853000-144853552
chr5	CG	SV	147533232	147535193	37	.	.	ID=4172;Type=complex;Left=chr5:147533232-147533580+;Right=chr5:147534971-147535193+;Distance=1739;DiscordantMatePairAlignments=37;LeftRepeat=;RightRepeat=MIR3:SINE:MIR;LeftGenes=NM_001001325:+;RightGenes=NM_001001325:+;XRef=;Frequency=0.94
chr5	CG	SV	147533232	147533580	37	+	.	ID=4172;Type=complex;Left=chr5:147533232-147533580;Right=chr5:147534971-147535193
chr5	CG	SV	147534971	147535193	37	+	.	ID=4172;Type=complex;Left=chr5:147533232-147533580;Right=chr5:147534971-147535193
chr5	CG	SV	147533232	147534808	294	.	.	ID=5562;Type=complex;Left=chr5:147533232-147533993+;Right=chr5:147534434-147534808-;Distance=1576;DiscordantMatePairAlignments=294;LeftRepeat=;RightRepeat=;LeftGenes=NM_001001325:+;RightGenes=NM_001001325:+;XRef=;Frequency=1.00
chr5	CG	SV	147533232	147533993	294	+	.	ID=5562;Type=complex;Left=chr5:147533232-147533993;Right=chr5:147534434-147534808
chr5	CG	SV	147534434	147534808	294	+	.	ID=5562;Type=complex;Left=chr5:147533232-147533993;Right=chr5:147534434-147534808
chr5	CG	SV	147534057	147535535	176	.	.	ID=525;Type=complex;Left=chr5:147534057-147534432-;Right=chr5:147534971-147535535+;Distance=539;DiscordantMatePairAlignments=176;LeftRepeat=;RightRepeat=MIR3:SINE:MIR;LeftGenes=NM_001001325:+;RightGenes=NM_001001325:+;XRef=;Frequency=1.00
chr5	CG	SV	147534057	147534432	176	-	.	ID=525;Type=complex;Left=chr5:147534057-147534432;Right=chr5:147534971-147535535
chr5	CG	SV	147534971	147535535	176	-	.	ID=525;Type=complex;Left=chr5:147534057-147534432;Right=chr5:147534971-147535535
chr5	CG	SV	151436609	151443202	186	.	.	ID=4169;Type=deletion;Left=chr5:151436609-151437284+;Right=chr5:151442643-151443202+;Distance=6034;DiscordantMatePairAlignments=186;LeftRepeat=Tandem period 22;RightRepeat=Tandem A;LeftGenes=;RightGenes=;XRef=rs70950672 (chr5:151436623-151442657);Frequency=0.88
chr5	CG	SV	151436609	151437284	186	+	.	ID=4169;Type=deletion;Left=chr5:151436609-151437284;Right=chr5:151442643-151443202
chr5	CG	SV	151442643	151443202	186	+	.	ID=4169;Type=deletion;Left=chr5:151436609-151437284;Right=chr5:151442643-151443202
chr5	CG	SV	160521283	160523245	16	.	.	ID=4165;Type=deletion;Left=chr5:160521283-160521665+;Right=chr5:160522951-160523245+;Distance=1668;DiscordantMatePairAlignments=16;LeftRepeat=AluSg:SINE:Alu;Tandem period 7;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr5	CG	SV	160521283	160521665	16	+	.	ID=4165;Type=deletion;Left=chr5:160521283-160521665;Right=chr5:160522951-160523245
chr5	CG	SV	160522951	160523245	16	+	.	ID=4165;Type=deletion;Left=chr5:160521283-160521665;Right=chr5:160522951-160523245
chr5	CG	SV	161520501	161521039	68	-	.	ID=1617;Type=interchromosomal;Left=chr5:161520501-161521039-;Right=chr14:30217336-30217970-;Distance=;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_016106:+;NM_182835:+;XRef=;Frequency=0.00
chr14	CG	SV	30217336	30217970	68	-	.	ID=1617;Type=interchromosomal;Left=chr5:161520501-161521039-;Right=chr14:30217336-30217970-;Distance=;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_016106:+;NM_182835:+;XRef=;Frequency=0.00
chr5	CG	SV	164074173	164076764	103	.	.	ID=4164;Type=deletion;Left=chr5:164074173-164074779+;Right=chr5:164075942-164076764+;Distance=1769;DiscordantMatePairAlignments=103;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr5	CG	SV	164074173	164074779	103	+	.	ID=4164;Type=deletion;Left=chr5:164074173-164074779;Right=chr5:164075942-164076764
chr5	CG	SV	164075942	164076764	103	+	.	ID=4164;Type=deletion;Left=chr5:164074173-164074779;Right=chr5:164075942-164076764
chr5	CG	SV	164931865	165079029	54	.	.	ID=4162;Type=deletion;Left=chr5:164931865-164932428+;Right=chr5:165078441-165079029+;Distance=146576;DiscordantMatePairAlignments=54;LeftRepeat=MLT1F:LTR:MaLR;RightRepeat=THE1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	164931865	164932428	54	+	.	ID=4162;Type=deletion;Left=chr5:164931865-164932428;Right=chr5:165078441-165079029
chr5	CG	SV	165078441	165079029	54	+	.	ID=4162;Type=deletion;Left=chr5:164931865-164932428;Right=chr5:165078441-165079029
chr5	CG	SV	169529813	169532073	129	.	.	ID=517;Type=distal-duplication;Left=chr5:169529813-169530045-;Right=chr5:169531333-169532073+;Distance=1288;DiscordantMatePairAlignments=129;LeftRepeat=MER20:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr5	CG	SV	169529813	169530045	129	-	.	ID=517;Type=distal-duplication;Left=chr5:169529813-169530045;Right=chr5:169531333-169532073
chr5	CG	SV	169531333	169532073	129	-	.	ID=517;Type=distal-duplication;Left=chr5:169529813-169530045;Right=chr5:169531333-169532073
chr5	CG	SV	169530275	169531327	127	.	.	ID=5561;Type=distal-duplication;Left=chr5:169530275-169530508+;Right=chr5:169530731-169531327-;Distance=1052;DiscordantMatePairAlignments=127;LeftRepeat=MIR3:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr5	CG	SV	169530275	169530508	127	+	.	ID=5561;Type=distal-duplication;Left=chr5:169530275-169530508;Right=chr5:169530731-169531327
chr5	CG	SV	169530731	169531327	127	+	.	ID=5561;Type=distal-duplication;Left=chr5:169530275-169530508;Right=chr5:169530731-169531327
chr5	CG	SV	170062610	170064379	57	.	.	ID=4159;Type=deletion;Left=chr5:170062610-170063306+;Right=chr5:170064081-170064379+;Distance=1471;DiscordantMatePairAlignments=57;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001034837:+;NM_001034838:+;NM_014592:+;RightGenes=NM_001034837:+;NM_001034838:+;NM_014592:+;XRef=;Frequency=0.59
chr5	CG	SV	170062610	170063306	57	+	.	ID=4159;Type=deletion;Left=chr5:170062610-170063306;Right=chr5:170064081-170064379
chr5	CG	SV	170064081	170064379	57	+	.	ID=4159;Type=deletion;Left=chr5:170062610-170063306;Right=chr5:170064081-170064379
chr5	CG	SV	176320194	176323449	44	.	.	ID=4147;Type=deletion;Left=chr5:176320194-176320745+;Right=chr5:176322794-176323449+;Distance=2600;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_016290:-;RightGenes=NM_016290:-;XRef=;Frequency=0.71
chr5	CG	SV	176320194	176320745	44	+	.	ID=4147;Type=deletion;Left=chr5:176320194-176320745;Right=chr5:176322794-176323449
chr5	CG	SV	176322794	176323449	44	+	.	ID=4147;Type=deletion;Left=chr5:176320194-176320745;Right=chr5:176322794-176323449
chr5	CG	SV	177754527	177756871	63	.	.	ID=4142;Type=deletion;Left=chr5:177754527-177754853+;Right=chr5:177756463-177756871+;Distance=1936;DiscordantMatePairAlignments=63;LeftRepeat=Self chain;Tandem period 88;RightRepeat=Self chain;Tandem period 88;LeftGenes=NM_173465:-;RightGenes=NM_173465:-;XRef=;Frequency=0.71
chr5	CG	SV	177754527	177754853	63	+	.	ID=4142;Type=deletion;Left=chr5:177754527-177754853;Right=chr5:177756463-177756871
chr5	CG	SV	177756463	177756871	63	+	.	ID=4142;Type=deletion;Left=chr5:177754527-177754853;Right=chr5:177756463-177756871
chr5	CG	SV	177944767	177945337	288	.	.	ID=1667;Type=tandem-duplication;Left=chr5:177944767-177945056-;Right=chr5:177945265-177945337-;Distance=281;DiscordantMatePairAlignments=288;LeftRepeat=Self chain;Tandem period 31;Tandem period 94;RightRepeat=Self chain;Tandem period 31;Tandem period 94;LeftGenes=NM_173465:-;RightGenes=NM_173465:-;XRef=;Frequency=1.00
chr5	CG	SV	177944767	177945056	288	-	.	ID=1667;Type=tandem-duplication;Left=chr5:177944767-177945056;Right=chr5:177945265-177945337
chr5	CG	SV	177945265	177945337	288	-	.	ID=1667;Type=tandem-duplication;Left=chr5:177944767-177945056;Right=chr5:177945265-177945337
chr5	CG	SV	178041672	178046386	10	.	.	ID=4141;Type=deletion;Left=chr5:178041672-178042019+;Right=chr5:178046022-178046386+;Distance=4350;DiscordantMatePairAlignments=10;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr5	CG	SV	178041672	178042019	10	+	.	ID=4141;Type=deletion;Left=chr5:178041672-178042019;Right=chr5:178046022-178046386
chr5	CG	SV	178046022	178046386	10	+	.	ID=4141;Type=deletion;Left=chr5:178041672-178042019;Right=chr5:178046022-178046386
chr5	CG	SV	178280973	178286141	163	.	.	ID=4140;Type=deletion;Left=chr5:178280973-178281657+;Right=chr5:178285806-178286141+;Distance=4833;DiscordantMatePairAlignments=163;LeftRepeat=L1MD2:LINE:L1;Self chain;RightRepeat=L1ME3B:LINE:L1;Self chain;LeftGenes=NM_030613:+;RightGenes=NM_030613:+;XRef=;Frequency=0.24
chr5	CG	SV	178280973	178281657	163	+	.	ID=4140;Type=deletion;Left=chr5:178280973-178281657;Right=chr5:178285806-178286141
chr5	CG	SV	178285806	178286141	163	+	.	ID=4140;Type=deletion;Left=chr5:178280973-178281657;Right=chr5:178285806-178286141
chr5	CG	SV	180501840	180503241	100	.	.	ID=4138;Type=deletion;Left=chr5:180501840-180502488+;Right=chr5:180502585-180503241+;Distance=745;DiscordantMatePairAlignments=100;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67335144 (chr5:180501840-180502585);Frequency=0.24
chr5	CG	SV	180501840	180502488	100	+	.	ID=4138;Type=deletion;Left=chr5:180501840-180502488;Right=chr5:180502585-180503241
chr5	CG	SV	180502585	180503241	100	+	.	ID=4138;Type=deletion;Left=chr5:180501840-180502488;Right=chr5:180502585-180503241
chr6	CG	SV	414136	415144	54	.	.	ID=4137;Type=deletion;Left=chr6:414136-414614+;Right=chr6:414663-415144+;Distance=527;DiscordantMatePairAlignments=54;LeftRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Tandem TCTGTC;Tandem period 10;Tandem period 36;RightRepeat=(TCTCC)n:Simple_repeat:Simple_repeat;Tandem CTCTC;Tandem period 30;Tandem period 36;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	414136	414614	54	+	.	ID=4137;Type=deletion;Left=chr6:414136-414614;Right=chr6:414663-415144
chr6	CG	SV	414663	415144	54	+	.	ID=4137;Type=deletion;Left=chr6:414136-414614;Right=chr6:414663-415144
chr6	CG	SV	611376	613594	366	.	.	ID=4136;Type=deletion;Left=chr6:611376-611896+;Right=chr6:612821-613594+;Distance=1445;DiscordantMatePairAlignments=366;LeftRepeat=;RightRepeat=MLT2B3:LTR:ERVL;LeftGenes=NM_018303:-;RightGenes=NM_018303:-;XRef=;Frequency=0.88
chr6	CG	SV	611376	611896	366	+	.	ID=4136;Type=deletion;Left=chr6:611376-611896;Right=chr6:612821-613594
chr6	CG	SV	612821	613594	366	+	.	ID=4136;Type=deletion;Left=chr6:611376-611896;Right=chr6:612821-613594
chr6	CG	SV	802169	803341	52	.	.	ID=4135;Type=deletion;Left=chr6:802169-802534+;Right=chr6:802714-803341+;Distance=545;DiscordantMatePairAlignments=52;LeftRepeat=;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;Tandem ATCC;Tandem period 52;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr6	CG	SV	802169	802534	52	+	.	ID=4135;Type=deletion;Left=chr6:802169-802534;Right=chr6:802714-803341
chr6	CG	SV	802714	803341	52	+	.	ID=4135;Type=deletion;Left=chr6:802169-802534;Right=chr6:802714-803341
chr6	CG	SV	4199863	4200839	10	.	.	ID=4130;Type=deletion;Left=chr6:4199863-4200411+;Right=chr6:4200352-4200839+;Distance=489;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 49;RightRepeat=MER20:DNA:MER1_type;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr6	CG	SV	4199863	4200411	10	+	.	ID=4130;Type=deletion;Left=chr6:4199863-4200411;Right=chr6:4200352-4200839
chr6	CG	SV	4200352	4200839	10	+	.	ID=4130;Type=deletion;Left=chr6:4199863-4200411;Right=chr6:4200352-4200839
chr6	CG	SV	4982248	4984774	212	.	.	ID=4129;Type=deletion;Left=chr6:4982248-4982871+;Right=chr6:4984185-4984774+;Distance=1937;DiscordantMatePairAlignments=212;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	4982248	4982871	212	+	.	ID=4129;Type=deletion;Left=chr6:4982248-4982871;Right=chr6:4984185-4984774
chr6	CG	SV	4984185	4984774	212	+	.	ID=4129;Type=deletion;Left=chr6:4982248-4982871;Right=chr6:4984185-4984774
chr6	CG	SV	5843448	5844596	98	.	.	ID=4128;Type=deletion;Left=chr6:5843448-5844104+;Right=chr6:5843876-5844596+;Distance=428;DiscordantMatePairAlignments=98;LeftRepeat=HERV16:LTR:ERVL;RightRepeat=HERV16:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs67009989 (chr6:5843446-5843874);Frequency=0.59
chr6	CG	SV	5843448	5844104	98	+	.	ID=4128;Type=deletion;Left=chr6:5843448-5844104;Right=chr6:5843876-5844596
chr6	CG	SV	5843876	5844596	98	+	.	ID=4128;Type=deletion;Left=chr6:5843448-5844104;Right=chr6:5843876-5844596
chr6	CG	SV	13990531	13992367	35	.	.	ID=4119;Type=deletion;Left=chr6:13990531-13991025+;Right=chr6:13991834-13992367+;Distance=1303;DiscordantMatePairAlignments=35;LeftRepeat=HERV17:LTR:ERV1;RightRepeat=LTR17:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr6	CG	SV	13990531	13991025	35	+	.	ID=4119;Type=deletion;Left=chr6:13990531-13991025;Right=chr6:13991834-13992367
chr6	CG	SV	13991834	13992367	35	+	.	ID=4119;Type=deletion;Left=chr6:13990531-13991025;Right=chr6:13991834-13992367
chr6	CG	SV	18510069	18511456	289	.	.	ID=4115;Type=deletion;Left=chr6:18510069-18510662+;Right=chr6:18510849-18511456+;Distance=780;DiscordantMatePairAlignments=289;LeftRepeat=;RightRepeat=MER103:DNA:DNA;LeftGenes=NM_182757:+;RightGenes=NM_182757:+;XRef=rs66988260 (chr6:18510069-18510849);Frequency=0.94
chr6	CG	SV	18510069	18510662	289	+	.	ID=4115;Type=deletion;Left=chr6:18510069-18510662;Right=chr6:18510849-18511456
chr6	CG	SV	18510849	18511456	289	+	.	ID=4115;Type=deletion;Left=chr6:18510069-18510662;Right=chr6:18510849-18511456
chr6	CG	SV	19873104	19879541	51	.	.	ID=4114;Type=deletion;Left=chr6:19873104-19873592+;Right=chr6:19879182-19879541+;Distance=6078;DiscordantMatePairAlignments=51;LeftRepeat=L1HS:LINE:L1;RightRepeat=AluJ:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr6	CG	SV	19873104	19873592	51	+	.	ID=4114;Type=deletion;Left=chr6:19873104-19873592;Right=chr6:19879182-19879541
chr6	CG	SV	19879182	19879541	51	+	.	ID=4114;Type=deletion;Left=chr6:19873104-19873592;Right=chr6:19879182-19879541
chr6	CG	SV	24056714	24057997	25	.	.	ID=4111;Type=deletion;Left=chr6:24056714-24057010+;Right=chr6:24057318-24057997+;Distance=604;DiscordantMatePairAlignments=25;LeftRepeat=L1M3:LINE:L1;RightRepeat=L1M3:LINE:L1;Tandem A;Tandem period 363;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr6	CG	SV	24056714	24057010	25	+	.	ID=4111;Type=deletion;Left=chr6:24056714-24057010;Right=chr6:24057318-24057997
chr6	CG	SV	24057318	24057997	25	+	.	ID=4111;Type=deletion;Left=chr6:24056714-24057010;Right=chr6:24057318-24057997
chr6	CG	SV	24919858	24926625	58	.	.	ID=4110;Type=deletion;Left=chr6:24919858-24920409+;Right=chr6:24925933-24926625+;Distance=6075;DiscordantMatePairAlignments=58;LeftRepeat=;RightRepeat=;LeftGenes=NM_014722:-;RightGenes=NM_014722:-;XRef=rs72246104 (chr6:24919854-24925929);Frequency=0.94
chr6	CG	SV	24919858	24920409	58	+	.	ID=4110;Type=deletion;Left=chr6:24919858-24920409;Right=chr6:24925933-24926625
chr6	CG	SV	24925933	24926625	58	+	.	ID=4110;Type=deletion;Left=chr6:24919858-24920409;Right=chr6:24925933-24926625
chr6	CG	SV	25755688	25755905	68	.	.	ID=5560;Type=probable-inversion;Left=chr6:25755688-25756248+;Right=chr6:25755689-25755905-;Distance=217;DiscordantMatePairAlignments=68;LeftRepeat=L1ME4a:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	25755688	25756248	68	+	.	ID=5560;Type=probable-inversion;Left=chr6:25755688-25756248;Right=chr6:25755689-25755905
chr6	CG	SV	25755689	25755905	68	+	.	ID=5560;Type=probable-inversion;Left=chr6:25755688-25756248;Right=chr6:25755689-25755905
chr6	CG	SV	26851904	26853703	13	.	.	ID=4109;Type=deletion;Left=chr6:26851904-26852422+;Right=chr6:26853152-26853703+;Distance=1248;DiscordantMatePairAlignments=13;LeftRepeat=L1PA2:LINE:L1;SegDup;Self chain;RightRepeat=L1PA2:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs67572983 (chr6:26851897-26853161);Frequency=1.00
chr6	CG	SV	26851904	26852422	13	+	.	ID=4109;Type=deletion;Left=chr6:26851904-26852422;Right=chr6:26853152-26853703
chr6	CG	SV	26853152	26853703	13	+	.	ID=4109;Type=deletion;Left=chr6:26851904-26852422;Right=chr6:26853152-26853703
chr6	CG	SV	29793461	29796677	112	.	.	ID=4108;Type=deletion;Left=chr6:29793461-29794229+;Right=chr6:29796072-29796677+;Distance=2611;DiscordantMatePairAlignments=112;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71757463 (chr6:29793467-29796078);Frequency=0.94
chr6	CG	SV	29793461	29794229	112	+	.	ID=4108;Type=deletion;Left=chr6:29793461-29794229;Right=chr6:29796072-29796677
chr6	CG	SV	29796072	29796677	112	+	.	ID=4108;Type=deletion;Left=chr6:29793461-29794229;Right=chr6:29796072-29796677
chr6	CG	SV	29923090	29924069	16	.	.	ID=4107;Type=deletion;Left=chr6:29923090-29923629+;Right=chr6:29923586-29924069+;Distance=496;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 124;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr6	CG	SV	29923090	29923629	16	+	.	ID=4107;Type=deletion;Left=chr6:29923090-29923629;Right=chr6:29923586-29924069
chr6	CG	SV	29923586	29924069	16	+	.	ID=4107;Type=deletion;Left=chr6:29923090-29923629;Right=chr6:29923586-29924069
chr6	CG	SV	30007761	30009938	74	.	.	ID=4106;Type=deletion;Left=chr6:30007761-30008536+;Right=chr6:30009519-30009938+;Distance=1758;DiscordantMatePairAlignments=74;LeftRepeat=(TCTCCC)n:Simple_repeat:Simple_repeat;Self chain;Tandem CCCTCT;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10705419 (chr6:30007761-30009519);Frequency=0.88
chr6	CG	SV	30007761	30008536	74	+	.	ID=4106;Type=deletion;Left=chr6:30007761-30008536;Right=chr6:30009519-30009938
chr6	CG	SV	30009519	30009938	74	+	.	ID=4106;Type=deletion;Left=chr6:30007761-30008536;Right=chr6:30009519-30009938
chr6	CG	SV	30315873	30316534	11	.	.	ID=4104;Type=deletion;Left=chr6:30315873-30316403+;Right=chr6:30316292-30316534+;Distance=419;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr6	CG	SV	30315873	30316403	11	+	.	ID=4104;Type=deletion;Left=chr6:30315873-30316403;Right=chr6:30316292-30316534
chr6	CG	SV	30316292	30316534	11	+	.	ID=4104;Type=deletion;Left=chr6:30315873-30316403;Right=chr6:30316292-30316534
chr6	CG	SV	33233898	33235425	213	.	.	ID=4102;Type=deletion;Left=chr6:33233898-33234524+;Right=chr6:33234821-33235425+;Distance=923;DiscordantMatePairAlignments=213;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67134142 (chr6:33233901-33234821);Frequency=0.35
chr6	CG	SV	33233898	33234524	213	+	.	ID=4102;Type=deletion;Left=chr6:33233898-33234524;Right=chr6:33234821-33235425
chr6	CG	SV	33234821	33235425	213	+	.	ID=4102;Type=deletion;Left=chr6:33233898-33234524;Right=chr6:33234821-33235425
chr6	CG	SV	34045807	34051110	54	.	.	ID=4101;Type=deletion;Left=chr6:34045807-34046492+;Right=chr6:34050675-34051110+;Distance=4868;DiscordantMatePairAlignments=54;LeftRepeat=L1MDa:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr6	CG	SV	34045807	34046492	54	+	.	ID=4101;Type=deletion;Left=chr6:34045807-34046492;Right=chr6:34050675-34051110
chr6	CG	SV	34050675	34051110	54	+	.	ID=4101;Type=deletion;Left=chr6:34045807-34046492;Right=chr6:34050675-34051110
chr6	CG	SV	35734412	35738376	75	.	.	ID=4099;Type=deletion;Left=chr6:35734412-35734736+;Right=chr6:35737724-35738376+;Distance=3312;DiscordantMatePairAlignments=75;LeftRepeat=L1M4:LINE:L1;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_001145775:-;NM_001145776:-;NM_001145777:-;NM_004117:-;RightGenes=NM_001145775:-;NM_001145776:-;NM_001145777:-;NM_004117:-;XRef=rs67674318 (chr6:35734410-35737722);Frequency=0.82
chr6	CG	SV	35734412	35734736	75	+	.	ID=4099;Type=deletion;Left=chr6:35734412-35734736;Right=chr6:35737724-35738376
chr6	CG	SV	35737724	35738376	75	+	.	ID=4099;Type=deletion;Left=chr6:35734412-35734736;Right=chr6:35737724-35738376
chr6	CG	SV	44864439	45047295	40	.	.	ID=1660;Type=tandem-duplication;Left=chr6:44864439-44864888-;Right=chr6:45046617-45047295-;Distance=182407;DiscordantMatePairAlignments=40;LeftRepeat=;RightRepeat=THE1C:LTR:MaLR;LeftGenes=;RightGenes=NM_003599:-;NM_181356:-;XRef=;Frequency=0.00
chr6	CG	SV	44864439	44864888	40	-	.	ID=1660;Type=tandem-duplication;Left=chr6:44864439-44864888;Right=chr6:45046617-45047295
chr6	CG	SV	45046617	45047295	40	-	.	ID=1660;Type=tandem-duplication;Left=chr6:44864439-44864888;Right=chr6:45046617-45047295
chr6	CG	SV	51847536	51854054	105	.	.	ID=4090;Type=deletion;Left=chr6:51847536-51848021+;Right=chr6:51853574-51854054+;Distance=6038;DiscordantMatePairAlignments=105;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_138694:-;NM_170724:-;RightGenes=NM_138694:-;NM_170724:-;XRef=rs71690319 (chr6:51847527-51853565);Frequency=0.59
chr6	CG	SV	51847536	51848021	105	+	.	ID=4090;Type=deletion;Left=chr6:51847536-51848021;Right=chr6:51853574-51854054
chr6	CG	SV	51853574	51854054	105	+	.	ID=4090;Type=deletion;Left=chr6:51847536-51848021;Right=chr6:51853574-51854054
chr6	CG	SV	54032469	54036668	80	.	.	ID=1658;Type=complex;Left=chr6:54032469-54032616-;Right=chr6:54036047-54036668-;Distance=4052;DiscordantMatePairAlignments=80;LeftRepeat=;RightRepeat=;LeftGenes=NM_138569:+;RightGenes=NM_138569:+;XRef=;Frequency=0.88
chr6	CG	SV	54032469	54032616	80	-	.	ID=1658;Type=complex;Left=chr6:54032469-54032616;Right=chr6:54036047-54036668
chr6	CG	SV	54036047	54036668	80	-	.	ID=1658;Type=complex;Left=chr6:54032469-54032616;Right=chr6:54036047-54036668
chr6	CG	SV	54032764	54043430	77	.	.	ID=4088;Type=complex;Left=chr6:54032764-54032915+;Right=chr6:54042789-54043430+;Distance=10025;DiscordantMatePairAlignments=77;LeftRepeat=;RightRepeat=;LeftGenes=NM_138569:+;RightGenes=NM_138569:+;XRef=;Frequency=0.88
chr6	CG	SV	54032764	54032915	77	+	.	ID=4088;Type=complex;Left=chr6:54032764-54032915;Right=chr6:54042789-54043430
chr6	CG	SV	54042789	54043430	77	+	.	ID=4088;Type=complex;Left=chr6:54032764-54032915;Right=chr6:54042789-54043430
chr6	CG	SV	54036668	54043283	226	.	.	ID=4087;Type=complex;Left=chr6:54036668-54037250+;Right=chr6:54042787-54043283+;Distance=6119;DiscordantMatePairAlignments=226;LeftRepeat=;RightRepeat=;LeftGenes=NM_138569:+;RightGenes=NM_138569:+;XRef=;Frequency=0.88
chr6	CG	SV	54036668	54037250	226	+	.	ID=4087;Type=complex;Left=chr6:54036668-54037250;Right=chr6:54042787-54043283
chr6	CG	SV	54042787	54043283	226	+	.	ID=4087;Type=complex;Left=chr6:54036668-54037250;Right=chr6:54042787-54043283
chr6	CG	SV	57107765	57153828	16	.	.	ID=4083;Type=complex;Left=chr6:57107765-57108485+;Right=chr6:57153705-57153828+;Distance=45940;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=;LeftGenes=NM_001031623:+;NM_015555:+;RightGenes=NM_004282:+;XRef=;Frequency=0.00
chr6	CG	SV	57107765	57108485	16	+	.	ID=4083;Type=complex;Left=chr6:57107765-57108485;Right=chr6:57153705-57153828
chr6	CG	SV	57153705	57153828	16	+	.	ID=4083;Type=complex;Left=chr6:57107765-57108485;Right=chr6:57153705-57153828
chr6	CG	SV	57153519	57162034	35	.	.	ID=514;Type=complex;Left=chr6:57153519-57153821-;Right=chr6:57161628-57162034+;Distance=7807;DiscordantMatePairAlignments=35;LeftRepeat=L1ME3:LINE:L1;RightRepeat=;LeftGenes=NM_004282:+;RightGenes=NM_016277:-;NM_183227:-;XRef=;Frequency=0.00
chr6	CG	SV	57153519	57153821	35	-	.	ID=514;Type=complex;Left=chr6:57153519-57153821;Right=chr6:57161628-57162034
chr6	CG	SV	57161628	57162034	35	-	.	ID=514;Type=complex;Left=chr6:57153519-57153821;Right=chr6:57161628-57162034
chr6	CG	SV	57392870	57397758	131	.	.	ID=4082;Type=deletion;Left=chr6:57392870-57393502+;Right=chr6:57397315-57397758+;Distance=4445;DiscordantMatePairAlignments=131;LeftRepeat=;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs72273072 (chr6:57392872-57397315);Frequency=1.00
chr6	CG	SV	57392870	57393502	131	+	.	ID=4082;Type=deletion;Left=chr6:57392870-57393502;Right=chr6:57397315-57397758
chr6	CG	SV	57397315	57397758	131	+	.	ID=4082;Type=deletion;Left=chr6:57392870-57393502;Right=chr6:57397315-57397758
chr6	CG	SV	57405149	57410090	60	.	.	ID=4081;Type=deletion;Left=chr6:57405149-57405820+;Right=chr6:57409205-57410090+;Distance=4056;DiscordantMatePairAlignments=60;LeftRepeat=;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=;Frequency=1.00
chr6	CG	SV	57405149	57405820	60	+	.	ID=4081;Type=deletion;Left=chr6:57405149-57405820;Right=chr6:57409205-57410090
chr6	CG	SV	57409205	57410090	60	+	.	ID=4081;Type=deletion;Left=chr6:57405149-57405820;Right=chr6:57409205-57410090
chr6	CG	SV	57531030	57537796	536	.	.	ID=4080;Type=deletion;Left=chr6:57531030-57531701+;Right=chr6:57537082-57537796+;Distance=6052;DiscordantMatePairAlignments=536;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs68023605 (chr6:57531027-57537079);Frequency=1.00
chr6	CG	SV	57531030	57531701	536	+	.	ID=4080;Type=deletion;Left=chr6:57531030-57531701;Right=chr6:57537082-57537796
chr6	CG	SV	57537082	57537796	536	+	.	ID=4080;Type=deletion;Left=chr6:57531030-57531701;Right=chr6:57537082-57537796
chr6	CG	SV	57586115	57587412	333	.	.	ID=4079;Type=deletion;Left=chr6:57586115-57586725+;Right=chr6:57586822-57587412+;Distance=707;DiscordantMatePairAlignments=333;LeftRepeat=L1ME1:LINE:L1;RightRepeat=L1ME1:LINE:L1;LeftGenes=NM_000947:+;RightGenes=NM_000947:+;XRef=rs72194487 (chr6:57586107-57586814);Frequency=1.00
chr6	CG	SV	57586115	57586725	333	+	.	ID=4079;Type=deletion;Left=chr6:57586115-57586725;Right=chr6:57586822-57587412
chr6	CG	SV	57586822	57587412	333	+	.	ID=4079;Type=deletion;Left=chr6:57586115-57586725;Right=chr6:57586822-57587412
chr6	CG	SV	57691648	57698902	39	.	.	ID=4078;Type=deletion;Left=chr6:57691648-57692109+;Right=chr6:57698241-57698902+;Distance=6593;DiscordantMatePairAlignments=39;LeftRepeat=(TTTTTA)n:Simple_repeat:Simple_repeat;RightRepeat=Charlie5:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs66514956 (chr6:57691631-57698224);Frequency=1.00
chr6	CG	SV	57691648	57692109	39	+	.	ID=4078;Type=deletion;Left=chr6:57691648-57692109;Right=chr6:57698241-57698902
chr6	CG	SV	57698241	57698902	39	+	.	ID=4078;Type=deletion;Left=chr6:57691648-57692109;Right=chr6:57698241-57698902
chr6	CG	SV	64724975	64726933	127	.	.	ID=4074;Type=deletion;Left=chr6:64724975-64725536+;Right=chr6:64726314-64726933+;Distance=1339;DiscordantMatePairAlignments=127;LeftRepeat=MER82:DNA:MER2_type;Self chain;RightRepeat=MLT1A1:LTR:MaLR;LeftGenes=NM_001142800:-;RightGenes=NM_001142800:-;XRef=rs71765003 (chr6:64724970-64726309);Frequency=0.65
chr6	CG	SV	64724975	64725536	127	+	.	ID=4074;Type=deletion;Left=chr6:64724975-64725536;Right=chr6:64726314-64726933
chr6	CG	SV	64726314	64726933	127	+	.	ID=4074;Type=deletion;Left=chr6:64724975-64725536;Right=chr6:64726314-64726933
chr6	CG	SV	65241873	65242908	11	.	.	ID=4073;Type=deletion;Left=chr6:65241873-65242407+;Right=chr6:65242187-65242908+;Distance=314;DiscordantMatePairAlignments=11;LeftRepeat=MIR:SINE:MIR;RightRepeat=AluYa5:SINE:Alu;Tandem A;LeftGenes=NM_001142800:-;RightGenes=NM_001142800:-;XRef=rs70976666 (chr6:65241883-65242197);Frequency=0.59
chr6	CG	SV	65241873	65242407	11	+	.	ID=4073;Type=deletion;Left=chr6:65241873-65242407;Right=chr6:65242187-65242908
chr6	CG	SV	65242187	65242908	11	+	.	ID=4073;Type=deletion;Left=chr6:65241873-65242407;Right=chr6:65242187-65242908
chr6	CG	SV	66316758	66319344	222	.	.	ID=4072;Type=deletion;Left=chr6:66316758-66317519+;Right=chr6:66318752-66319344+;Distance=1994;DiscordantMatePairAlignments=222;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=NM_001142800:-;NM_001142801:-;NM_198283:-;RightGenes=NM_001142800:-;NM_001142801:-;NM_198283:-;XRef=rs67260056 (chr6:66316748-66318742);Frequency=1.00
chr6	CG	SV	66316758	66317519	222	+	.	ID=4072;Type=deletion;Left=chr6:66316758-66317519;Right=chr6:66318752-66319344
chr6	CG	SV	66318752	66319344	222	+	.	ID=4072;Type=deletion;Left=chr6:66316758-66317519;Right=chr6:66318752-66319344
chr6	CG	SV	68158254	68169401	123	.	.	ID=4071;Type=deletion;Left=chr6:68158254-68158779+;Right=chr6:68168889-68169401+;Distance=10635;DiscordantMatePairAlignments=123;LeftRepeat=;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	68158254	68158779	123	+	.	ID=4071;Type=deletion;Left=chr6:68158254-68158779;Right=chr6:68168889-68169401
chr6	CG	SV	68168889	68169401	123	+	.	ID=4071;Type=deletion;Left=chr6:68158254-68158779;Right=chr6:68168889-68169401
chr6	CG	SV	74922156	74923921	168	.	.	ID=4068;Type=deletion;Left=chr6:74922156-74922743+;Right=chr6:74923307-74923921+;Distance=1151;DiscordantMatePairAlignments=168;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66965905 (chr6:74922153-74923304);Frequency=0.94
chr6	CG	SV	74922156	74922743	168	+	.	ID=4068;Type=deletion;Left=chr6:74922156-74922743;Right=chr6:74923307-74923921
chr6	CG	SV	74923307	74923921	168	+	.	ID=4068;Type=deletion;Left=chr6:74922156-74922743;Right=chr6:74923307-74923921
chr6	CG	SV	77154216	77159854	52	.	.	ID=4067;Type=deletion;Left=chr6:77154216-77154803+;Right=chr6:77159365-77159854+;Distance=5149;DiscordantMatePairAlignments=52;LeftRepeat=L1MA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67536422 (chr6:77154212-77159361);Frequency=0.71
chr6	CG	SV	77154216	77154803	52	+	.	ID=4067;Type=deletion;Left=chr6:77154216-77154803;Right=chr6:77159365-77159854
chr6	CG	SV	77159365	77159854	52	+	.	ID=4067;Type=deletion;Left=chr6:77154216-77154803;Right=chr6:77159365-77159854
chr6	CG	SV	85374866	85381542	180	.	.	ID=4066;Type=deletion;Left=chr6:85374866-85375715+;Right=chr6:85380943-85381542+;Distance=6077;DiscordantMatePairAlignments=180;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70976689 (chr6:85374870-85380947);Frequency=1.00
chr6	CG	SV	85374866	85375715	180	+	.	ID=4066;Type=deletion;Left=chr6:85374866-85375715;Right=chr6:85380943-85381542
chr6	CG	SV	85380943	85381542	180	+	.	ID=4066;Type=deletion;Left=chr6:85374866-85375715;Right=chr6:85380943-85381542
chr6	CG	SV	89980347	89980667	80	.	.	ID=5552;Type=probable-inversion;Left=chr6:89980347-89980982+;Right=chr6:89980349-89980667-;Distance=320;DiscordantMatePairAlignments=80;LeftRepeat=L1M3:LINE:L1;RightRepeat=L1MA7:LINE:L1;LeftGenes=NM_002042:-;RightGenes=NM_002042:-;XRef=;Frequency=1.00
chr6	CG	SV	89980347	89980982	80	+	.	ID=5552;Type=probable-inversion;Left=chr6:89980347-89980982;Right=chr6:89980349-89980667
chr6	CG	SV	89980349	89980667	80	+	.	ID=5552;Type=probable-inversion;Left=chr6:89980347-89980982;Right=chr6:89980349-89980667
chr6	CG	SV	95250045	95251779	134	.	.	ID=4064;Type=deletion;Left=chr6:95250045-95250575+;Right=chr6:95251059-95251779+;Distance=1014;DiscordantMatePairAlignments=134;LeftRepeat=L1M5:LINE:L1;RightRepeat=L1MEc:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67517600 (chr6:95250045-95251059);Frequency=0.76
chr6	CG	SV	95250045	95250575	134	+	.	ID=4064;Type=deletion;Left=chr6:95250045-95250575;Right=chr6:95251059-95251779
chr6	CG	SV	95251059	95251779	134	+	.	ID=4064;Type=deletion;Left=chr6:95250045-95250575;Right=chr6:95251059-95251779
chr6	CG	SV	100141222	100142633	177	.	.	ID=4060;Type=deletion;Left=chr6:100141222-100141811+;Right=chr6:100142042-100142633+;Distance=820;DiscordantMatePairAlignments=177;LeftRepeat=Tigger1:DNA:MER2_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67162792 (chr6:100141227-100142042);Frequency=1.00
chr6	CG	SV	100141222	100141811	177	+	.	ID=4060;Type=deletion;Left=chr6:100141222-100141811;Right=chr6:100142042-100142633
chr6	CG	SV	100142042	100142633	177	+	.	ID=4060;Type=deletion;Left=chr6:100141222-100141811;Right=chr6:100142042-100142633
chr6	CG	SV	107090329	107091178	14	.	.	ID=4058;Type=deletion;Left=chr6:107090329-107091136+;Right=chr6:107090648-107091178+;Distance=319;DiscordantMatePairAlignments=14;LeftRepeat=L1MC4:LINE:L1;Tandem T;RightRepeat=L1MC4:LINE:L1;LeftGenes=NM_001624:+;RightGenes=NM_001624:+;XRef=rs72069284 (chr6:107090315-107090634);Frequency=1.00
chr6	CG	SV	107090329	107091136	14	+	.	ID=4058;Type=deletion;Left=chr6:107090329-107091136;Right=chr6:107090648-107091178
chr6	CG	SV	107090648	107091178	14	+	.	ID=4058;Type=deletion;Left=chr6:107090329-107091136;Right=chr6:107090648-107091178
chr6	CG	SV	108138035	108139772	82	.	.	ID=4057;Type=deletion;Left=chr6:108138035-108138614+;Right=chr6:108139095-108139772+;Distance=1060;DiscordantMatePairAlignments=82;LeftRepeat=;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_198081:-;RightGenes=NM_198081:-;XRef=rs66561424 (chr6:108138035-108139079);Frequency=1.00
chr6	CG	SV	108138035	108138614	82	+	.	ID=4057;Type=deletion;Left=chr6:108138035-108138614;Right=chr6:108139095-108139772
chr6	CG	SV	108139095	108139772	82	+	.	ID=4057;Type=deletion;Left=chr6:108138035-108138614;Right=chr6:108139095-108139772
chr6	CG	SV	113807653	113810429	254	.	.	ID=4055;Type=deletion;Left=chr6:113807653-113808317+;Right=chr6:113809812-113810429+;Distance=2159;DiscordantMatePairAlignments=254;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	113807653	113808317	254	+	.	ID=4055;Type=deletion;Left=chr6:113807653-113808317;Right=chr6:113809812-113810429
chr6	CG	SV	113809812	113810429	254	+	.	ID=4055;Type=deletion;Left=chr6:113807653-113808317;Right=chr6:113809812-113810429
chr6	CG	SV	116857523	116858346	15	.	.	ID=4054;Type=deletion;Left=chr6:116857523-116858257+;Right=chr6:116857842-116858346+;Distance=319;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_001080976:+;NM_013352:+;RightGenes=NM_001080976:+;NM_013352:+;XRef=rs6149767 (chr6:116857506-116857825);Frequency=0.88
chr6	CG	SV	116857523	116858257	15	+	.	ID=4054;Type=deletion;Left=chr6:116857523-116858257;Right=chr6:116857842-116858346
chr6	CG	SV	116857842	116858346	15	+	.	ID=4054;Type=deletion;Left=chr6:116857523-116858257;Right=chr6:116857842-116858346
chr6	CG	SV	121671110	121672188	23	.	.	ID=4050;Type=deletion;Left=chr6:121671110-121671510+;Right=chr6:121671538-121672188+;Distance=428;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=AluYb9:SINE:Alu;LeftGenes=NM_152730:-;RightGenes=NM_152730:-;XRef=;Frequency=0.00
chr6	CG	SV	121671110	121671510	23	+	.	ID=4050;Type=deletion;Left=chr6:121671110-121671510;Right=chr6:121671538-121672188
chr6	CG	SV	121671538	121672188	23	+	.	ID=4050;Type=deletion;Left=chr6:121671110-121671510;Right=chr6:121671538-121672188
chr6	CG	SV	129361213	129367907	466	.	.	ID=4047;Type=deletion;Left=chr6:129361213-129361788+;Right=chr6:129367272-129367907+;Distance=6059;DiscordantMatePairAlignments=466;LeftRepeat=;RightRepeat=;LeftGenes=NM_000426:+;NM_001079823:+;RightGenes=NM_000426:+;NM_001079823:+;XRef=rs71701877 (chr6:129361208-129367267);Frequency=0.41
chr6	CG	SV	129361213	129361788	466	+	.	ID=4047;Type=deletion;Left=chr6:129361213-129361788;Right=chr6:129367272-129367907
chr6	CG	SV	129367272	129367907	466	+	.	ID=4047;Type=deletion;Left=chr6:129361213-129361788;Right=chr6:129367272-129367907
chr6	CG	SV	130183997	132245890	74	.	.	ID=5550;Type=probable-inversion;Left=chr6:130183997-130184560+;Right=chr6:132245493-132245890-;Distance=2061893;DiscordantMatePairAlignments=74;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=NM_006208:+;XRef=;Frequency=0.00
chr6	CG	SV	130183997	130184560	74	+	.	ID=5550;Type=probable-inversion;Left=chr6:130183997-130184560;Right=chr6:132245493-132245890
chr6	CG	SV	132245493	132245890	74	+	.	ID=5550;Type=probable-inversion;Left=chr6:130183997-130184560;Right=chr6:132245493-132245890
chr6	CG	SV	130330812	132886665	26	.	.	ID=513;Type=probable-inversion;Left=chr6:130330812-130331483-;Right=chr6:132886312-132886665+;Distance=2554829;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=L1MC3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	130330812	130331483	26	-	.	ID=513;Type=probable-inversion;Left=chr6:130330812-130331483;Right=chr6:132886312-132886665
chr6	CG	SV	132886312	132886665	26	-	.	ID=513;Type=probable-inversion;Left=chr6:130330812-130331483;Right=chr6:132886312-132886665
chr6	CG	SV	131926349	131927316	69	.	.	ID=512;Type=probable-inversion;Left=chr6:131926349-131926491-;Right=chr6:131926654-131927316+;Distance=163;DiscordantMatePairAlignments=69;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr6	CG	SV	131926349	131926491	69	-	.	ID=512;Type=probable-inversion;Left=chr6:131926349-131926491;Right=chr6:131926654-131927316
chr6	CG	SV	131926654	131927316	69	-	.	ID=512;Type=probable-inversion;Left=chr6:131926349-131926491;Right=chr6:131926654-131927316
chr6	CG	SV	132250067	132890097	34	.	.	ID=5548;Type=probable-inversion;Left=chr6:132250067-132250598+;Right=chr6:132889631-132890097-;Distance=640030;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;RightRepeat=MER57A-int:LTR:ERV1;LeftGenes=NM_006208:+;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	132250067	132250598	34	+	.	ID=5548;Type=probable-inversion;Left=chr6:132250067-132250598;Right=chr6:132889631-132890097
chr6	CG	SV	132889631	132890097	34	+	.	ID=5548;Type=probable-inversion;Left=chr6:132250067-132250598;Right=chr6:132889631-132890097
chr6	CG	SV	133383522	133390317	289	.	.	ID=4045;Type=deletion;Left=chr6:133383522-133384143+;Right=chr6:133389587-133390317+;Distance=6065;DiscordantMatePairAlignments=289;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs70979714 (chr6:133383513-133389578);Frequency=0.82
chr6	CG	SV	133383522	133384143	289	+	.	ID=4045;Type=deletion;Left=chr6:133383522-133384143;Right=chr6:133389587-133390317
chr6	CG	SV	133389587	133390317	289	+	.	ID=4045;Type=deletion;Left=chr6:133383522-133384143;Right=chr6:133389587-133390317
chr6	CG	SV	134310673	134312053	427	.	.	ID=4044;Type=deletion;Left=chr6:134310673-134311292+;Right=chr6:134311421-134312053+;Distance=748;DiscordantMatePairAlignments=427;LeftRepeat=ERVL-B4:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66832735 (chr6:134310669-134311417);Frequency=1.00
chr6	CG	SV	134310673	134311292	427	+	.	ID=4044;Type=deletion;Left=chr6:134310673-134311292;Right=chr6:134311421-134312053
chr6	CG	SV	134311421	134312053	427	+	.	ID=4044;Type=deletion;Left=chr6:134310673-134311292;Right=chr6:134311421-134312053
chr6	CG	SV	136639341	136641184	16	.	.	ID=4034;Type=deletion;Left=chr6:136639341-136639748+;Right=chr6:136640697-136641184+;Distance=1356;DiscordantMatePairAlignments=16;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_001077440:-;NM_001077441:-;NM_014739:-;RightGenes=NM_001077440:-;NM_001077441:-;NM_014739:-;XRef=;Frequency=1.00
chr6	CG	SV	136639341	136639748	16	+	.	ID=4034;Type=deletion;Left=chr6:136639341-136639748;Right=chr6:136640697-136641184
chr6	CG	SV	136640697	136641184	16	+	.	ID=4034;Type=deletion;Left=chr6:136639341-136639748;Right=chr6:136640697-136641184
chr6	CG	SV	137355387	137356530	57	.	.	ID=4029;Type=deletion;Left=chr6:137355387-137356045+;Right=chr6:137355880-137356530+;Distance=493;DiscordantMatePairAlignments=57;LeftRepeat=L1MC:LINE:L1;RightRepeat=;LeftGenes=NR_027994:-;RightGenes=NR_027994:-;XRef=rs67777601 (chr6:137355386-137355879);Frequency=1.00
chr6	CG	SV	137355387	137356045	57	+	.	ID=4029;Type=deletion;Left=chr6:137355387-137356045;Right=chr6:137355880-137356530
chr6	CG	SV	137355880	137356530	57	+	.	ID=4029;Type=deletion;Left=chr6:137355387-137356045;Right=chr6:137355880-137356530
chr6	CG	SV	148756344	148772706	64	.	.	ID=511;Type=probable-inversion;Left=chr6:148756344-148756898-;Right=chr6:148772214-148772706+;Distance=15316;DiscordantMatePairAlignments=64;LeftRepeat=AluSq:SINE:Alu;RightRepeat=;LeftGenes=NM_015278:+;RightGenes=NM_015278:+;XRef=;Frequency=0.00
chr6	CG	SV	148756344	148756898	64	-	.	ID=511;Type=probable-inversion;Left=chr6:148756344-148756898;Right=chr6:148772214-148772706
chr6	CG	SV	148772214	148772706	64	-	.	ID=511;Type=probable-inversion;Left=chr6:148756344-148756898;Right=chr6:148772214-148772706
chr6	CG	SV	151527808	151529247	149	.	.	ID=4026;Type=deletion;Left=chr6:151527808-151528425+;Right=chr6:151528878-151529247+;Distance=1070;DiscordantMatePairAlignments=149;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr6	CG	SV	151527808	151528425	149	+	.	ID=4026;Type=deletion;Left=chr6:151527808-151528425;Right=chr6:151528878-151529247
chr6	CG	SV	151528878	151529247	149	+	.	ID=4026;Type=deletion;Left=chr6:151527808-151528425;Right=chr6:151528878-151529247
chr6	CG	SV	152563955	152580615	72	.	.	ID=1645;Type=tandem-duplication;Left=chr6:152563955-152564421-;Right=chr6:152580230-152580615-;Distance=16194;DiscordantMatePairAlignments=72;LeftRepeat=;RightRepeat=;LeftGenes=NM_015293:-;NM_033071:-;NM_182961:-;RightGenes=NM_015293:-;NM_033071:-;NM_182961:-;XRef=;Frequency=0.00
chr6	CG	SV	152563955	152564421	72	-	.	ID=1645;Type=tandem-duplication;Left=chr6:152563955-152564421;Right=chr6:152580230-152580615
chr6	CG	SV	152580230	152580615	72	-	.	ID=1645;Type=tandem-duplication;Left=chr6:152563955-152564421;Right=chr6:152580230-152580615
chr6	CG	SV	153071675	153076169	124	.	.	ID=4025;Type=deletion;Left=chr6:153071675-153072124+;Right=chr6:153075493-153076169+;Distance=3818;DiscordantMatePairAlignments=124;LeftRepeat=L1MEb:LINE:L1;RightRepeat=L1MEb:LINE:L1;LeftGenes=NM_025107:+;RightGenes=NM_025107:+;XRef=;Frequency=1.00
chr6	CG	SV	153071675	153072124	124	+	.	ID=4025;Type=deletion;Left=chr6:153071675-153072124;Right=chr6:153075493-153076169
chr6	CG	SV	153075493	153076169	124	+	.	ID=4025;Type=deletion;Left=chr6:153071675-153072124;Right=chr6:153075493-153076169
chr6	CG	SV	154488622	154489504	11	.	.	ID=4023;Type=deletion;Left=chr6:154488622-154489315+;Right=chr6:154488944-154489504+;Distance=322;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_001008503:+;RightGenes=NM_001008503:+;XRef=rs10525587 (chr6:154488607-154488929);Frequency=1.00
chr6	CG	SV	154488622	154489315	11	+	.	ID=4023;Type=deletion;Left=chr6:154488622-154489315;Right=chr6:154488944-154489504
chr6	CG	SV	154488944	154489504	11	+	.	ID=4023;Type=deletion;Left=chr6:154488622-154489315;Right=chr6:154488944-154489504
chr6	CG	SV	159572115	159572982	15	.	.	ID=4020;Type=deletion;Left=chr6:159572115-159572794+;Right=chr6:159572428-159572982+;Distance=313;DiscordantMatePairAlignments=15;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_032532:+;RightGenes=NM_032532:+;XRef=rs71858783 (chr6:159572099-159572412);Frequency=1.00
chr6	CG	SV	159572115	159572794	15	+	.	ID=4020;Type=deletion;Left=chr6:159572115-159572794;Right=chr6:159572428-159572982
chr6	CG	SV	159572428	159572982	15	+	.	ID=4020;Type=deletion;Left=chr6:159572115-159572794;Right=chr6:159572428-159572982
chr6	CG	SV	160797020	160876583	30	.	.	ID=1644;Type=tandem-duplication;Left=chr6:160797020-160797701-;Right=chr6:160876499-160876583-;Distance=78882;DiscordantMatePairAlignments=30;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGATGG;LeftGenes=;RightGenes=NM_005577:-;XRef=;Frequency=0.94
chr6	CG	SV	160797020	160797701	30	-	.	ID=1644;Type=tandem-duplication;Left=chr6:160797020-160797701;Right=chr6:160876499-160876583
chr6	CG	SV	160876499	160876583	30	-	.	ID=1644;Type=tandem-duplication;Left=chr6:160797020-160797701;Right=chr6:160876499-160876583
chr6	CG	SV	160848382	161002277	10	.	.	ID=4017;Type=complex;Left=chr6:160848382-160848682+;Right=chr6:161002100-161002277+;Distance=153718;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_028092:-;NR_028093:-;RightGenes=NM_005577:-;XRef=;Frequency=0.12
chr6	CG	SV	160848382	160848682	10	+	.	ID=4017;Type=complex;Left=chr6:160848382-160848682;Right=chr6:161002100-161002277
chr6	CG	SV	161002100	161002277	10	+	.	ID=4017;Type=complex;Left=chr6:160848382-160848682;Right=chr6:161002100-161002277
chr6	CG	SV	160847848	161001194	16	.	.	ID=1643;Type=complex;Left=chr6:160847848-160848382-;Right=chr6:161001004-161001194-;Distance=152812;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;RightRepeat=LTR60:LTR:ERV1;Self chain;LeftGenes=NR_028092:-;NR_028093:-;RightGenes=NM_005577:-;XRef=;Frequency=0.24
chr6	CG	SV	160847848	160848382	16	-	.	ID=1643;Type=complex;Left=chr6:160847848-160848382;Right=chr6:161001004-161001194
chr6	CG	SV	161001004	161001194	16	-	.	ID=1643;Type=complex;Left=chr6:160847848-160848382;Right=chr6:161001004-161001194
chr6	CG	SV	160847868	161002279	10	.	.	ID=1642;Type=complex;Left=chr6:160847868-160848390-;Right=chr6:161002181-161002279-;Distance=153889;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NR_028092:-;NR_028093:-;RightGenes=NM_005577:-;XRef=;Frequency=0.18
chr6	CG	SV	160847868	160848390	10	-	.	ID=1642;Type=complex;Left=chr6:160847868-160848390;Right=chr6:161002181-161002279
chr6	CG	SV	161002181	161002279	10	-	.	ID=1642;Type=complex;Left=chr6:160847868-160848390;Right=chr6:161002181-161002279
chr6	CG	SV	162410104	162686511	43	.	.	ID=4014;Type=deletion;Left=chr6:162410104-162410472+;Right=chr6:162685824-162686511+;Distance=275720;DiscordantMatePairAlignments=43;LeftRepeat=Self chain;THE1A:LTR:MaLR;RightRepeat=;LeftGenes=NM_004562:-;NM_013987:-;NM_013988:-;RightGenes=NM_004562:-;NM_013987:-;NM_013988:-;XRef=;Frequency=0.00
chr6	CG	SV	162410104	162410472	43	+	.	ID=4014;Type=deletion;Left=chr6:162410104-162410472;Right=chr6:162685824-162686511
chr6	CG	SV	162685824	162686511	43	+	.	ID=4014;Type=deletion;Left=chr6:162410104-162410472;Right=chr6:162685824-162686511
chr6	CG	SV	162859718	162932994	10	.	.	ID=4011;Type=deletion;Left=chr6:162859718-162860195+;Right=chr6:162932556-162932994+;Distance=72838;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=NM_004562:-;NM_013987:-;NM_013988:-;RightGenes=NM_004562:-;NM_013987:-;NM_013988:-;XRef=;Frequency=0.00
chr6	CG	SV	162859718	162860195	10	+	.	ID=4011;Type=deletion;Left=chr6:162859718-162860195;Right=chr6:162932556-162932994
chr6	CG	SV	162932556	162932994	10	+	.	ID=4011;Type=deletion;Left=chr6:162859718-162860195;Right=chr6:162932556-162932994
chr6	CG	SV	165644659	165652636	44	.	.	ID=4010;Type=deletion;Left=chr6:165644659-165645278+;Right=chr6:165652125-165652636+;Distance=7466;DiscordantMatePairAlignments=44;LeftRepeat=LTR46:LTR:ERV1;RightRepeat=L1PA8:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72196192 (chr6:165644656-165652122);Frequency=0.88
chr6	CG	SV	165644659	165645278	44	+	.	ID=4010;Type=deletion;Left=chr6:165644659-165645278;Right=chr6:165652125-165652636
chr6	CG	SV	165652125	165652636	44	+	.	ID=4010;Type=deletion;Left=chr6:165644659-165645278;Right=chr6:165652125-165652636
chr6	CG	SV	166172861	166173471	11	.	.	ID=1641;Type=tandem-duplication;Left=chr6:166172861-166173161-;Right=chr6:166173269-166173471-;Distance=310;DiscordantMatePairAlignments=11;LeftRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;Tandem period 12;Tandem period 18;RightRepeat=C-rich:Low_complexity:Low_complexity;Tandem CATCCC;Tandem period 12;Tandem period 18;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr6	CG	SV	166172861	166173161	11	-	.	ID=1641;Type=tandem-duplication;Left=chr6:166172861-166173161;Right=chr6:166173269-166173471
chr6	CG	SV	166173269	166173471	11	-	.	ID=1641;Type=tandem-duplication;Left=chr6:166172861-166173161;Right=chr6:166173269-166173471
chr6	CG	SV	167729750	167737155	148	.	.	ID=509;Type=probable-inversion;Left=chr6:167729750-167730551-;Right=chr6:167736636-167737155+;Distance=6085;DiscordantMatePairAlignments=148;LeftRepeat=L1MC3:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	167729750	167730551	148	-	.	ID=509;Type=probable-inversion;Left=chr6:167729750-167730551;Right=chr6:167736636-167737155
chr6	CG	SV	167736636	167737155	148	-	.	ID=509;Type=probable-inversion;Left=chr6:167729750-167730551;Right=chr6:167736636-167737155
chr6	CG	SV	167738310	167738940	114	+	.	ID=3925;Type=interchromosomal;Left=chr6:167738310-167738940+;Right=chr13:86917347-86917863+;Distance=;DiscordantMatePairAlignments=114;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	86917347	86917863	114	+	.	ID=3925;Type=interchromosomal;Left=chr6:167738310-167738940+;Right=chr13:86917347-86917863+;Distance=;DiscordantMatePairAlignments=114;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	168101456	168262571	158	.	.	ID=5546;Type=probable-inversion;Left=chr6:168101456-168102061+;Right=chr6:168261897-168262571-;Distance=161115;DiscordantMatePairAlignments=158;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_001040000:+;NM_001040001:+;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	168101456	168102061	158	+	.	ID=5546;Type=probable-inversion;Left=chr6:168101456-168102061;Right=chr6:168261897-168262571
chr6	CG	SV	168261897	168262571	158	+	.	ID=5546;Type=probable-inversion;Left=chr6:168101456-168102061;Right=chr6:168261897-168262571
chr6	CG	SV	168459845	168462149	189	.	.	ID=4007;Type=deletion;Left=chr6:168459845-168460565+;Right=chr6:168461676-168462149+;Distance=1831;DiscordantMatePairAlignments=189;LeftRepeat=Self chain;Tandem period 109;RightRepeat=Self chain;Tandem period 109;LeftGenes=NM_214462:-;RightGenes=NM_214462:-;XRef=rs71731358 (chr6:168459767-168461373);Frequency=0.71
chr6	CG	SV	168459845	168460565	189	+	.	ID=4007;Type=deletion;Left=chr6:168459845-168460565;Right=chr6:168461676-168462149
chr6	CG	SV	168461676	168462149	189	+	.	ID=4007;Type=deletion;Left=chr6:168459845-168460565;Right=chr6:168461676-168462149
chr6	CG	SV	169951948	169952943	38	.	.	ID=4002;Type=deletion;Left=chr6:169951948-169952690+;Right=chr6:169952331-169952943+;Distance=383;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.25
chr6	CG	SV	169951948	169952690	38	+	.	ID=4002;Type=deletion;Left=chr6:169951948-169952690;Right=chr6:169952331-169952943
chr6	CG	SV	169952331	169952943	38	+	.	ID=4002;Type=deletion;Left=chr6:169951948-169952690;Right=chr6:169952331-169952943
chr6	CG	SV	170270944	170271355	20	.	.	ID=5544;Type=probable-inversion;Left=chr6:170270944-170271178+;Right=chr6:170271071-170271355-;Distance=411;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;Tandem TGCAGA;Tandem period 18;RightRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem CATCTG;Tandem period 12;Tandem period 18;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr6	CG	SV	170270944	170271178	20	+	.	ID=5544;Type=probable-inversion;Left=chr6:170270944-170271178;Right=chr6:170271071-170271355
chr6	CG	SV	170271071	170271355	20	+	.	ID=5544;Type=probable-inversion;Left=chr6:170270944-170271178;Right=chr6:170271071-170271355
chr6	CG	SV	170603666	170604061	54	.	.	ID=1635;Type=tandem-duplication;Left=chr6:170603666-170603841-;Right=chr6:170603844-170604061-;Distance=220;DiscordantMatePairAlignments=54;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GT;Tandem GTGAGT;Tandem period 8;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr6	CG	SV	170603666	170603841	54	-	.	ID=1635;Type=tandem-duplication;Left=chr6:170603666-170603841;Right=chr6:170603844-170604061
chr6	CG	SV	170603844	170604061	54	-	.	ID=1635;Type=tandem-duplication;Left=chr6:170603666-170603841;Right=chr6:170603844-170604061
chr7	CG	SV	948622	950389	34	.	.	ID=3998;Type=deletion;Left=chr7:948622-949164+;Right=chr7:950039-950389+;Distance=1417;DiscordantMatePairAlignments=34;LeftRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;Tandem GAG;Tandem period 18;RightRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;Tandem period 18;LeftGenes=NM_006869:-;RightGenes=NM_006869:-;XRef=;Frequency=0.00
chr7	CG	SV	948622	949164	34	+	.	ID=3998;Type=deletion;Left=chr7:948622-949164;Right=chr7:950039-950389
chr7	CG	SV	950039	950389	34	+	.	ID=3998;Type=deletion;Left=chr7:948622-949164;Right=chr7:950039-950389
chr7	CG	SV	1133954	1136111	139	.	.	ID=3997;Type=deletion;Left=chr7:1133954-1134516+;Right=chr7:1135670-1136111+;Distance=1716;DiscordantMatePairAlignments=139;LeftRepeat=AluSg/x:SINE:Alu;Self chain;Tandem period 46;RightRepeat=AluJo:SINE:Alu;Self chain;Tandem period 46;LeftGenes=NM_001134395:-;NM_001134396:-;NM_032350:-;RightGenes=NM_001134395:-;NM_001134396:-;NM_032350:-;XRef=;Frequency=0.47
chr7	CG	SV	1133954	1134516	139	+	.	ID=3997;Type=deletion;Left=chr7:1133954-1134516;Right=chr7:1135670-1136111
chr7	CG	SV	1135670	1136111	139	+	.	ID=3997;Type=deletion;Left=chr7:1133954-1134516;Right=chr7:1135670-1136111
chr7	CG	SV	1151600	1154722	102	.	.	ID=3996;Type=deletion;Left=chr7:1151600-1152160+;Right=chr7:1154190-1154722+;Distance=2590;DiscordantMatePairAlignments=102;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71703948 (chr7:1151590-1154180);Frequency=0.94
chr7	CG	SV	1151600	1152160	102	+	.	ID=3996;Type=deletion;Left=chr7:1151600-1152160;Right=chr7:1154190-1154722
chr7	CG	SV	1154190	1154722	102	+	.	ID=3996;Type=deletion;Left=chr7:1151600-1152160;Right=chr7:1154190-1154722
chr7	CG	SV	2041533	2042723	44	.	.	ID=3994;Type=deletion;Left=chr7:2041533-2041882+;Right=chr7:2042523-2042723+;Distance=990;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;Tandem period 55;RightRepeat=Self chain;Tandem period 55;LeftGenes=NM_001013836:-;NM_001013837:-;NM_003550:-;RightGenes=NM_001013836:-;NM_001013837:-;NM_003550:-;XRef=;Frequency=0.12
chr7	CG	SV	2041533	2041882	44	+	.	ID=3994;Type=deletion;Left=chr7:2041533-2041882;Right=chr7:2042523-2042723
chr7	CG	SV	2042523	2042723	44	+	.	ID=3994;Type=deletion;Left=chr7:2041533-2041882;Right=chr7:2042523-2042723
chr7	CG	SV	2932029	2932878	12	.	.	ID=3992;Type=deletion;Left=chr7:2932029-2932663+;Right=chr7:2932361-2932878+;Distance=332;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem period 33;RightRepeat=Self chain;Tandem period 33;LeftGenes=NM_032415:-;RightGenes=NM_032415:-;XRef=;Frequency=0.12
chr7	CG	SV	2932029	2932663	12	+	.	ID=3992;Type=deletion;Left=chr7:2932029-2932663;Right=chr7:2932361-2932878
chr7	CG	SV	2932361	2932878	12	+	.	ID=3992;Type=deletion;Left=chr7:2932029-2932663;Right=chr7:2932361-2932878
chr7	CG	SV	3101894	3105192	15	.	.	ID=3991;Type=deletion;Left=chr7:3101894-3102385+;Right=chr7:3104755-3105192+;Distance=2861;DiscordantMatePairAlignments=15;LeftRepeat=AluSq/x:SINE:Alu;RightRepeat=AluSq:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	3101894	3102385	15	+	.	ID=3991;Type=deletion;Left=chr7:3101894-3102385;Right=chr7:3104755-3105192
chr7	CG	SV	3104755	3105192	15	+	.	ID=3991;Type=deletion;Left=chr7:3101894-3102385;Right=chr7:3104755-3105192
chr7	CG	SV	4047791	4049350	206	.	.	ID=3989;Type=deletion;Left=chr7:4047791-4048369+;Right=chr7:4048823-4049350+;Distance=1032;DiscordantMatePairAlignments=206;LeftRepeat=L1MC1:LINE:L1;RightRepeat=;LeftGenes=NM_152744:+;RightGenes=NM_152744:+;XRef=rs72449159 (chr7:4047790-4048822);Frequency=0.06
chr7	CG	SV	4047791	4048369	206	+	.	ID=3989;Type=deletion;Left=chr7:4047791-4048369;Right=chr7:4048823-4049350
chr7	CG	SV	4048823	4049350	206	+	.	ID=3989;Type=deletion;Left=chr7:4047791-4048369;Right=chr7:4048823-4049350
chr7	CG	SV	4089748	4089899	31	.	.	ID=1631;Type=tandem-duplication;Left=chr7:4089748-4089823-;Right=chr7:4089827-4089899-;Distance=76;DiscordantMatePairAlignments=31;LeftRepeat=CT-rich:Low_complexity:Low_complexity;Tandem period 20;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem period 20;LeftGenes=NM_152744:+;RightGenes=NM_152744:+;XRef=;Frequency=0.15
chr7	CG	SV	4089748	4089823	31	-	.	ID=1631;Type=tandem-duplication;Left=chr7:4089748-4089823;Right=chr7:4089827-4089899
chr7	CG	SV	4089827	4089899	31	-	.	ID=1631;Type=tandem-duplication;Left=chr7:4089748-4089823;Right=chr7:4089827-4089899
chr7	CG	SV	9601175	9603149	65	.	.	ID=3987;Type=deletion;Left=chr7:9601175-9601776+;Right=chr7:9602518-9603149+;Distance=1343;DiscordantMatePairAlignments=65;LeftRepeat=THE1D-int:LTR:MaLR;RightRepeat=THE1D-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs71014005 (chr7:9601175-9602518);Frequency=1.00
chr7	CG	SV	9601175	9601776	65	+	.	ID=3987;Type=deletion;Left=chr7:9601175-9601776;Right=chr7:9602518-9603149
chr7	CG	SV	9602518	9603149	65	+	.	ID=3987;Type=deletion;Left=chr7:9601175-9601776;Right=chr7:9602518-9603149
chr7	CG	SV	14217622	14218896	52	.	.	ID=3985;Type=deletion;Left=chr7:14217622-14218138+;Right=chr7:14218580-14218896+;Distance=958;DiscordantMatePairAlignments=52;LeftRepeat=Self chain;Tandem period 21;Tandem period 43;RightRepeat=Self chain;Tandem period 21;Tandem period 43;LeftGenes=NM_004080:-;NM_145695:-;RightGenes=NM_004080:-;NM_145695:-;XRef=;Frequency=0.41
chr7	CG	SV	14217622	14218138	52	+	.	ID=3985;Type=deletion;Left=chr7:14217622-14218138;Right=chr7:14218580-14218896
chr7	CG	SV	14218580	14218896	52	+	.	ID=3985;Type=deletion;Left=chr7:14217622-14218138;Right=chr7:14218580-14218896
chr7	CG	SV	22401328	22403830	298	.	.	ID=3982;Type=deletion;Left=chr7:22401328-22401941+;Right=chr7:22403288-22403830+;Distance=1960;DiscordantMatePairAlignments=298;LeftRepeat=LOR1a:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72428882 (chr7:22401328-22403288);Frequency=0.71
chr7	CG	SV	22401328	22401941	298	+	.	ID=3982;Type=deletion;Left=chr7:22401328-22401941;Right=chr7:22403288-22403830
chr7	CG	SV	22403288	22403830	298	+	.	ID=3982;Type=deletion;Left=chr7:22401328-22401941;Right=chr7:22403288-22403830
chr7	CG	SV	24004690	24007269	100	.	.	ID=3981;Type=deletion;Left=chr7:24004690-24005142+;Right=chr7:24006599-24007269+;Distance=1909;DiscordantMatePairAlignments=100;LeftRepeat=;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=rs68096632 (chr7:24004686-24006595);Frequency=0.94
chr7	CG	SV	24004690	24005142	100	+	.	ID=3981;Type=deletion;Left=chr7:24004690-24005142;Right=chr7:24006599-24007269
chr7	CG	SV	24006599	24007269	100	+	.	ID=3981;Type=deletion;Left=chr7:24004690-24005142;Right=chr7:24006599-24007269
chr7	CG	SV	24224612	24225402	13	.	.	ID=3980;Type=deletion;Left=chr7:24224612-24225169+;Right=chr7:24225008-24225402+;Distance=396;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr7	CG	SV	24224612	24225169	13	+	.	ID=3980;Type=deletion;Left=chr7:24224612-24225169;Right=chr7:24225008-24225402
chr7	CG	SV	24225008	24225402	13	+	.	ID=3980;Type=deletion;Left=chr7:24224612-24225169;Right=chr7:24225008-24225402
chr7	CG	SV	25023976	25027059	152	.	.	ID=3978;Type=deletion;Left=chr7:25023976-25024595+;Right=chr7:25026385-25027059+;Distance=2409;DiscordantMatePairAlignments=152;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr7	CG	SV	25023976	25024595	152	+	.	ID=3978;Type=deletion;Left=chr7:25023976-25024595;Right=chr7:25026385-25027059
chr7	CG	SV	25026385	25027059	152	+	.	ID=3978;Type=deletion;Left=chr7:25023976-25024595;Right=chr7:25026385-25027059
chr7	CG	SV	28180829	28181923	32	.	.	ID=3976;Type=deletion;Left=chr7:28180829-28181359+;Right=chr7:28181193-28181923+;Distance=364;DiscordantMatePairAlignments=32;LeftRepeat=;RightRepeat=;LeftGenes=NM_175061:-;RightGenes=NM_175061:-;XRef=rs67581067 (chr7:28180829-28181193);Frequency=0.76
chr7	CG	SV	28180829	28181359	32	+	.	ID=3976;Type=deletion;Left=chr7:28180829-28181359;Right=chr7:28181193-28181923
chr7	CG	SV	28181193	28181923	32	+	.	ID=3976;Type=deletion;Left=chr7:28180829-28181359;Right=chr7:28181193-28181923
chr7	CG	SV	30863604	30864459	11	.	.	ID=3975;Type=deletion;Left=chr7:30863604-30864455+;Right=chr7:30863903-30864459+;Distance=299;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_032222:+;RightGenes=NM_032222:+;XRef=;Frequency=0.29
chr7	CG	SV	30863604	30864455	11	+	.	ID=3975;Type=deletion;Left=chr7:30863604-30864455;Right=chr7:30863903-30864459
chr7	CG	SV	30863903	30864459	11	+	.	ID=3975;Type=deletion;Left=chr7:30863604-30864455;Right=chr7:30863903-30864459
chr7	CG	SV	31553138	31559256	67	.	.	ID=508;Type=complex;Left=chr7:31553138-31553296-;Right=chr7:31558520-31559256+;Distance=5224;DiscordantMatePairAlignments=67;LeftRepeat=Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=NM_194300:+;RightGenes=NM_194300:+;XRef=;Frequency=0.59
chr7	CG	SV	31553138	31553296	67	-	.	ID=508;Type=complex;Left=chr7:31553138-31553296;Right=chr7:31558520-31559256
chr7	CG	SV	31558520	31559256	67	-	.	ID=508;Type=complex;Left=chr7:31553138-31553296;Right=chr7:31558520-31559256
chr7	CG	SV	31553554	31556796	103	.	.	ID=5543;Type=complex;Left=chr7:31553554-31553814+;Right=chr7:31556286-31556796-;Distance=3242;DiscordantMatePairAlignments=103;LeftRepeat=Self chain;THE1C:LTR:MaLR;RightRepeat=Self chain;LeftGenes=NM_194300:+;RightGenes=NM_194300:+;XRef=;Frequency=0.59
chr7	CG	SV	31553554	31553814	103	+	.	ID=5543;Type=complex;Left=chr7:31553554-31553814;Right=chr7:31556286-31556796
chr7	CG	SV	31556286	31556796	103	+	.	ID=5543;Type=complex;Left=chr7:31553554-31553814;Right=chr7:31556286-31556796
chr7	CG	SV	31556796	31558944	73	.	.	ID=3974;Type=complex;Left=chr7:31556796-31557169+;Right=chr7:31558520-31558944+;Distance=1724;DiscordantMatePairAlignments=73;LeftRepeat=Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=NM_194300:+;RightGenes=NM_194300:+;XRef=;Frequency=0.59
chr7	CG	SV	31556796	31557169	73	+	.	ID=3974;Type=complex;Left=chr7:31556796-31557169;Right=chr7:31558520-31558944
chr7	CG	SV	31558520	31558944	73	+	.	ID=3974;Type=complex;Left=chr7:31556796-31557169;Right=chr7:31558520-31558944
chr7	CG	SV	32356679	32360273	214	.	.	ID=3973;Type=deletion;Left=chr7:32356679-32357405+;Right=chr7:32359640-32360273+;Distance=2961;DiscordantMatePairAlignments=214;LeftRepeat=L1MC5:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71014019 (chr7:32356690-32359651);Frequency=0.94
chr7	CG	SV	32356679	32357405	214	+	.	ID=3973;Type=deletion;Left=chr7:32356679-32357405;Right=chr7:32359640-32360273
chr7	CG	SV	32359640	32360273	214	+	.	ID=3973;Type=deletion;Left=chr7:32356679-32357405;Right=chr7:32359640-32360273
chr7	CG	SV	33865381	33866143	15	.	.	ID=3970;Type=deletion;Left=chr7:33865381-33866166+;Right=chr7:33865712-33866143+;Distance=331;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66914971 (chr7:33865366-33865697);Frequency=1.00
chr7	CG	SV	33865381	33866166	15	+	.	ID=3970;Type=deletion;Left=chr7:33865381-33866166;Right=chr7:33865712-33866143
chr7	CG	SV	33865712	33866143	15	+	.	ID=3970;Type=deletion;Left=chr7:33865381-33866166;Right=chr7:33865712-33866143
chr7	CG	SV	47674584	47676054	169	.	.	ID=1614;Type=tandem-duplication;Left=chr7:47674584-47675243-;Right=chr7:47675400-47676054-;Distance=811;DiscordantMatePairAlignments=169;LeftRepeat=MLT1B:LTR:MaLR;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr7	CG	SV	47674584	47675243	169	-	.	ID=1614;Type=tandem-duplication;Left=chr7:47674584-47675243;Right=chr7:47675400-47676054
chr7	CG	SV	47675400	47676054	169	-	.	ID=1614;Type=tandem-duplication;Left=chr7:47674584-47675243;Right=chr7:47675400-47676054
chr7	CG	SV	54563980	54565517	179	.	.	ID=3962;Type=deletion;Left=chr7:54563980-54564612+;Right=chr7:54564927-54565517+;Distance=947;DiscordantMatePairAlignments=179;LeftRepeat=L1MC3:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72118222 (chr7:54563980-54564927);Frequency=0.12
chr7	CG	SV	54563980	54564612	179	+	.	ID=3962;Type=deletion;Left=chr7:54563980-54564612;Right=chr7:54564927-54565517
chr7	CG	SV	54564927	54565517	179	+	.	ID=3962;Type=deletion;Left=chr7:54563980-54564612;Right=chr7:54564927-54565517
chr7	CG	SV	63953253	63956157	104	.	.	ID=3955;Type=deletion;Left=chr7:63953253-63953907+;Right=chr7:63955504-63956157+;Distance=2251;DiscordantMatePairAlignments=104;LeftRepeat=Self chain;RightRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;LeftGenes=;RightGenes=;XRef=rs71014041 (chr7:63953259-63955510);Frequency=1.00
chr7	CG	SV	63953253	63953907	104	+	.	ID=3955;Type=deletion;Left=chr7:63953253-63953907;Right=chr7:63955504-63956157
chr7	CG	SV	63955504	63956157	104	+	.	ID=3955;Type=deletion;Left=chr7:63953253-63953907;Right=chr7:63955504-63956157
chr7	CG	SV	65831345	73020271	15	.	.	ID=3954;Type=deletion;Left=chr7:65831345-65831554+;Right=chr7:73020075-73020271+;Distance=7188730;DiscordantMatePairAlignments=15;LeftRepeat=C-rich:Low_complexity:Low_complexity;SegDup;Self chain;Tandem period 12;Tandem period 36;RightRepeat=C-rich:Low_complexity:Low_complexity;SegDup;Self chain;Tandem period 12;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	65831345	65831554	15	+	.	ID=3954;Type=deletion;Left=chr7:65831345-65831554;Right=chr7:73020075-73020271
chr7	CG	SV	73020075	73020271	15	+	.	ID=3954;Type=deletion;Left=chr7:65831345-65831554;Right=chr7:73020075-73020271
chr7	CG	SV	67273208	97921141	44	.	.	ID=5527;Type=probable-inversion;Left=chr7:67273208-67273562+;Right=chr7:97920471-97921141-;Distance=30647933;DiscordantMatePairAlignments=44;LeftRepeat=MER5A:DNA:MER1_type;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	67273208	67273562	44	+	.	ID=5527;Type=probable-inversion;Left=chr7:67273208-67273562;Right=chr7:97920471-97921141
chr7	CG	SV	97920471	97921141	44	+	.	ID=5527;Type=probable-inversion;Left=chr7:67273208-67273562;Right=chr7:97920471-97921141
chr7	CG	SV	67364377	67365226	15	.	.	ID=3953;Type=deletion;Left=chr7:67364377-67364978+;Right=chr7:67364696-67365226+;Distance=319;DiscordantMatePairAlignments=15;LeftRepeat=AluYb8:SINE:Alu;Self chain;RightRepeat=Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	67364377	67364978	15	+	.	ID=3953;Type=deletion;Left=chr7:67364377-67364978;Right=chr7:67364696-67365226
chr7	CG	SV	67364696	67365226	15	+	.	ID=3953;Type=deletion;Left=chr7:67364377-67364978;Right=chr7:67364696-67365226
chr7	CG	SV	70849840	70851367	130	.	.	ID=3950;Type=deletion;Left=chr7:70849840-70850522+;Right=chr7:70850897-70851367+;Distance=1057;DiscordantMatePairAlignments=130;LeftRepeat=AluSp:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	70849840	70850522	130	+	.	ID=3950;Type=deletion;Left=chr7:70849840-70850522;Right=chr7:70850897-70851367
chr7	CG	SV	70850897	70851367	130	+	.	ID=3950;Type=deletion;Left=chr7:70849840-70850522;Right=chr7:70850897-70851367
chr7	CG	SV	73466521	73469954	87	.	.	ID=3923;Type=deletion;Left=chr7:73466521-73466811+;Right=chr7:73469339-73469954+;Distance=2818;DiscordantMatePairAlignments=87;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;Tandem period 135;LeftGenes=;RightGenes=;XRef=rs71014050 (chr7:73466431-73469249);Frequency=0.88
chr7	CG	SV	73466521	73466811	87	+	.	ID=3923;Type=deletion;Left=chr7:73466521-73466811;Right=chr7:73469339-73469954
chr7	CG	SV	73469339	73469954	87	+	.	ID=3923;Type=deletion;Left=chr7:73466521-73466811;Right=chr7:73469339-73469954
chr7	CG	SV	81279606	81280846	69	.	.	ID=3920;Type=deletion;Left=chr7:81279606-81280257+;Right=chr7:81280513-81280846+;Distance=907;DiscordantMatePairAlignments=69;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr7	CG	SV	81279606	81280257	69	+	.	ID=3920;Type=deletion;Left=chr7:81279606-81280257;Right=chr7:81280513-81280846
chr7	CG	SV	81280513	81280846	69	+	.	ID=3920;Type=deletion;Left=chr7:81279606-81280257;Right=chr7:81280513-81280846
chr7	CG	SV	87929243	87930406	50	.	.	ID=3919;Type=deletion;Left=chr7:87929243-87929855+;Right=chr7:87929693-87930406+;Distance=450;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66468286 (chr7:87929235-87929685);Frequency=1.00
chr7	CG	SV	87929243	87929855	50	+	.	ID=3919;Type=deletion;Left=chr7:87929243-87929855;Right=chr7:87929693-87930406
chr7	CG	SV	87929693	87930406	50	+	.	ID=3919;Type=deletion;Left=chr7:87929243-87929855;Right=chr7:87929693-87930406
chr7	CG	SV	89392108	89393063	17	.	.	ID=3918;Type=deletion;Left=chr7:89392108-89392748+;Right=chr7:89392528-89393063+;Distance=420;DiscordantMatePairAlignments=17;LeftRepeat=GA-rich:Low_complexity:Low_complexity;Tandem period 35;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71014061 (chr7:89392102-89392487);Frequency=1.00
chr7	CG	SV	89392108	89392748	17	+	.	ID=3918;Type=deletion;Left=chr7:89392108-89392748;Right=chr7:89392528-89393063
chr7	CG	SV	89392528	89393063	17	+	.	ID=3918;Type=deletion;Left=chr7:89392108-89392748;Right=chr7:89392528-89393063
chr7	CG	SV	96313823	96320750	203	.	.	ID=3915;Type=deletion;Left=chr7:96313823-96314413+;Right=chr7:96319931-96320750+;Distance=6108;DiscordantMatePairAlignments=203;LeftRepeat=L1MD2:LINE:L1;Self chain;RightRepeat=L1MD2:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71014064 (chr7:96313837-96319945);Frequency=1.00
chr7	CG	SV	96313823	96314413	203	+	.	ID=3915;Type=deletion;Left=chr7:96313823-96314413;Right=chr7:96319931-96320750
chr7	CG	SV	96319931	96320750	203	+	.	ID=3915;Type=deletion;Left=chr7:96313823-96314413;Right=chr7:96319931-96320750
chr7	CG	SV	97493722	97495891	46	.	.	ID=3914;Type=deletion;Left=chr7:97493722-97494328+;Right=chr7:97495520-97495891+;Distance=1798;DiscordantMatePairAlignments=46;LeftRepeat=AluSg:SINE:Alu;Self chain;Tandem TAAA;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs71954707 (chr7:97493567-97495364);Frequency=0.41
chr7	CG	SV	97493722	97494328	46	+	.	ID=3914;Type=deletion;Left=chr7:97493722-97494328;Right=chr7:97495520-97495891
chr7	CG	SV	97495520	97495891	46	+	.	ID=3914;Type=deletion;Left=chr7:97493722-97494328;Right=chr7:97495520-97495891
chr7	CG	SV	100388249	100389181	25	.	.	ID=1601;Type=distal-duplication;Left=chr7:100388249-100388521-;Right=chr7:100388741-100389181-;Distance=660;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;Tandem period 51;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	100388249	100388521	25	-	.	ID=1601;Type=distal-duplication;Left=chr7:100388249-100388521;Right=chr7:100388741-100389181
chr7	CG	SV	100388741	100389181	25	-	.	ID=1601;Type=distal-duplication;Left=chr7:100388249-100388521;Right=chr7:100388741-100389181
chr7	CG	SV	100388773	100389293	13	.	.	ID=3910;Type=distal-duplication;Left=chr7:100388773-100389583+;Right=chr7:100389181-100389293+;Distance=408;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 51;RightRepeat=Self chain;Tandem period 51;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	100388773	100389583	13	+	.	ID=3910;Type=distal-duplication;Left=chr7:100388773-100389583;Right=chr7:100389181-100389293
chr7	CG	SV	100389181	100389293	13	+	.	ID=3910;Type=distal-duplication;Left=chr7:100388773-100389583;Right=chr7:100389181-100389293
chr7	CG	SV	100400459	100401460	47	.	.	ID=3909;Type=deletion;Left=chr7:100400459-100400980+;Right=chr7:100401199-100401460+;Distance=740;DiscordantMatePairAlignments=47;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_001164462:+;RightGenes=NM_001164462:+;XRef=;Frequency=1.00
chr7	CG	SV	100400459	100400980	47	+	.	ID=3909;Type=deletion;Left=chr7:100400459-100400980;Right=chr7:100401199-100401460
chr7	CG	SV	100401199	100401460	47	+	.	ID=3909;Type=deletion;Left=chr7:100400459-100400980;Right=chr7:100401199-100401460
chr7	CG	SV	100787986	100791270	78	.	.	ID=3907;Type=deletion;Left=chr7:100787986-100788532+;Right=chr7:100790532-100791270+;Distance=2546;DiscordantMatePairAlignments=78;LeftRepeat=Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs66862807 (chr7:100787986-100790532);Frequency=0.41
chr7	CG	SV	100787986	100788532	78	+	.	ID=3907;Type=deletion;Left=chr7:100787986-100788532;Right=chr7:100790532-100791270
chr7	CG	SV	100790532	100791270	78	+	.	ID=3907;Type=deletion;Left=chr7:100787986-100788532;Right=chr7:100790532-100791270
chr7	CG	SV	100845908	100847479	157	.	.	ID=3906;Type=deletion;Left=chr7:100845908-100846428+;Right=chr7:100847017-100847479+;Distance=1109;DiscordantMatePairAlignments=157;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_133457:+;RightGenes=NM_133457:+;XRef=;Frequency=0.29
chr7	CG	SV	100845908	100846428	157	+	.	ID=3906;Type=deletion;Left=chr7:100845908-100846428;Right=chr7:100847017-100847479
chr7	CG	SV	100847017	100847479	157	+	.	ID=3906;Type=deletion;Left=chr7:100845908-100846428;Right=chr7:100847017-100847479
chr7	CG	SV	109223925	109241381	27	.	.	ID=3902;Type=deletion;Left=chr7:109223925-109224381+;Right=chr7:109241137-109241381+;Distance=17212;DiscordantMatePairAlignments=27;LeftRepeat=L1PA4:LINE:L1;RightRepeat=L1MD2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr7	CG	SV	109223925	109224381	27	+	.	ID=3902;Type=deletion;Left=chr7:109223925-109224381;Right=chr7:109241137-109241381
chr7	CG	SV	109241137	109241381	27	+	.	ID=3902;Type=deletion;Left=chr7:109223925-109224381;Right=chr7:109241137-109241381
chr7	CG	SV	110113967	110114556	37	+	.	ID=5302;Type=complex;Left=chr7:110113967-110114556+;Right=chr22:27395292-27395889-;Distance=;DiscordantMatePairAlignments=37;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_032549:-;RightGenes=NM_001145418:-;XRef=;Frequency=0.00
chr22	CG	SV	27395292	27395889	37	+	.	ID=5302;Type=complex;Left=chr7:110113967-110114556+;Right=chr22:27395292-27395889-;Distance=;DiscordantMatePairAlignments=37;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_032549:-;RightGenes=NM_001145418:-;XRef=;Frequency=0.00
chr7	CG	SV	113203405	113210042	193	.	.	ID=3901;Type=deletion;Left=chr7:113203405-113203979+;Right=chr7:113209451-113210042+;Distance=6046;DiscordantMatePairAlignments=193;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66950453 (chr7:113203397-113209443);Frequency=1.00
chr7	CG	SV	113203405	113203979	193	+	.	ID=3901;Type=deletion;Left=chr7:113203405-113203979;Right=chr7:113209451-113210042
chr7	CG	SV	113209451	113210042	193	+	.	ID=3901;Type=deletion;Left=chr7:113203405-113203979;Right=chr7:113209451-113210042
chr7	CG	SV	118131051	118131771	14	.	.	ID=3900;Type=deletion;Left=chr7:118131051-118131756+;Right=chr7:118131406-118131771+;Distance=355;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=ERVL-E:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	118131051	118131756	14	+	.	ID=3900;Type=deletion;Left=chr7:118131051-118131756;Right=chr7:118131406-118131771
chr7	CG	SV	118131406	118131771	14	+	.	ID=3900;Type=deletion;Left=chr7:118131051-118131756;Right=chr7:118131406-118131771
chr7	CG	SV	118618484	118622597	110	.	.	ID=3899;Type=deletion;Left=chr7:118618484-118619037+;Right=chr7:118621990-118622597+;Distance=3506;DiscordantMatePairAlignments=110;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66490609 (chr7:118618495-118621990);Frequency=0.53
chr7	CG	SV	118618484	118619037	110	+	.	ID=3899;Type=deletion;Left=chr7:118618484-118619037;Right=chr7:118621990-118622597
chr7	CG	SV	118621990	118622597	110	+	.	ID=3899;Type=deletion;Left=chr7:118618484-118619037;Right=chr7:118621990-118622597
chr7	CG	SV	128096462	128097508	10	.	.	ID=3897;Type=deletion;Left=chr7:128096462-128097136+;Right=chr7:128096780-128097508+;Distance=318;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72004118 (chr7:128096446-128096764);Frequency=1.00
chr7	CG	SV	128096462	128097136	10	+	.	ID=3897;Type=deletion;Left=chr7:128096462-128097136;Right=chr7:128096780-128097508
chr7	CG	SV	128096780	128097508	10	+	.	ID=3897;Type=deletion;Left=chr7:128096462-128097136;Right=chr7:128096780-128097508
chr7	CG	SV	133132212	133143312	24	.	.	ID=1599;Type=tandem-duplication;Left=chr7:133132212-133132748-;Right=chr7:133142966-133143312-;Distance=10564;DiscordantMatePairAlignments=24;LeftRepeat=;RightRepeat=;LeftGenes=NM_021807:+;RightGenes=NM_021807:+;XRef=;Frequency=0.00
chr7	CG	SV	133132212	133132748	24	-	.	ID=1599;Type=tandem-duplication;Left=chr7:133132212-133132748;Right=chr7:133142966-133143312
chr7	CG	SV	133142966	133143312	24	-	.	ID=1599;Type=tandem-duplication;Left=chr7:133132212-133132748;Right=chr7:133142966-133143312
chr7	CG	SV	133435543	133449497	54	.	.	ID=3893;Type=deletion;Left=chr7:133435543-133435875+;Right=chr7:133448872-133449497+;Distance=13329;DiscordantMatePairAlignments=54;LeftRepeat=MLT1C:LTR:MaLR;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr7	CG	SV	133435543	133435875	54	+	.	ID=3893;Type=deletion;Left=chr7:133435543-133435875;Right=chr7:133448872-133449497
chr7	CG	SV	133448872	133449497	54	+	.	ID=3893;Type=deletion;Left=chr7:133435543-133435875;Right=chr7:133448872-133449497
chr7	CG	SV	133519711	133520247	53	-	.	ID=306;Type=interchromosomal;Left=chr7:133519711-133520247-;Right=chr18:25580290-25580784+;Distance=;DiscordantMatePairAlignments=53;LeftRepeat=;RightRepeat=;LeftGenes=NM_144648:+;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	25580290	25580784	53	-	.	ID=306;Type=interchromosomal;Left=chr7:133519711-133520247-;Right=chr18:25580290-25580784+;Distance=;DiscordantMatePairAlignments=53;LeftRepeat=;RightRepeat=;LeftGenes=NM_144648:+;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	134000547	134001559	16	.	.	ID=3892;Type=deletion;Left=chr7:134000547-134001180+;Right=chr7:134000970-134001559+;Distance=423;DiscordantMatePairAlignments=16;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=NM_001724:+;NM_199186:+;RightGenes=NM_001724:+;NM_199186:+;XRef=rs71828851 (chr7:134000539-134000962);Frequency=0.59
chr7	CG	SV	134000547	134001180	16	+	.	ID=3892;Type=deletion;Left=chr7:134000547-134001180;Right=chr7:134000970-134001559
chr7	CG	SV	134000970	134001559	16	+	.	ID=3892;Type=deletion;Left=chr7:134000547-134001180;Right=chr7:134000970-134001559
chr7	CG	SV	137946987	137948405	71	.	.	ID=3890;Type=deletion;Left=chr7:137946987-137947460+;Right=chr7:137947759-137948405+;Distance=772;DiscordantMatePairAlignments=71;LeftRepeat=L1MA5A:LINE:L1;RightRepeat=;LeftGenes=NM_001139456:-;NM_174959:-;RightGenes=NM_001139456:-;NM_174959:-;XRef=rs72467481 (chr7:137946996-137947763);Frequency=0.82
chr7	CG	SV	137946987	137947460	71	+	.	ID=3890;Type=deletion;Left=chr7:137946987-137947460;Right=chr7:137947759-137948405
chr7	CG	SV	137947759	137948405	71	+	.	ID=3890;Type=deletion;Left=chr7:137946987-137947460;Right=chr7:137947759-137948405
chr7	CG	SV	139827946	139835689	15	.	.	ID=1598;Type=complex;Left=chr7:139827946-139828055-;Right=chr7:139834915-139835689-;Distance=7634;DiscordantMatePairAlignments=15;LeftRepeat=LTR49:LTR:ERV1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr7	CG	SV	139827946	139828055	15	-	.	ID=1598;Type=complex;Left=chr7:139827946-139828055;Right=chr7:139834915-139835689
chr7	CG	SV	139834915	139835689	15	-	.	ID=1598;Type=complex;Left=chr7:139827946-139828055;Right=chr7:139834915-139835689
chr7	CG	SV	139835692	139837060	34	.	.	ID=3887;Type=complex;Left=chr7:139835692-139836158+;Right=chr7:139836693-139837060+;Distance=1001;DiscordantMatePairAlignments=34;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr7	CG	SV	139835692	139836158	34	+	.	ID=3887;Type=complex;Left=chr7:139835692-139836158;Right=chr7:139836693-139837060
chr7	CG	SV	139836693	139837060	34	+	.	ID=3887;Type=complex;Left=chr7:139835692-139836158;Right=chr7:139836693-139837060
chr7	CG	SV	140066224	140255672	91	.	.	ID=3885;Type=deletion;Left=chr7:140066224-140066780+;Right=chr7:140255041-140255672+;Distance=188817;DiscordantMatePairAlignments=91;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=NM_004333:-;XRef=;Frequency=0.00
chr7	CG	SV	140066224	140066780	91	+	.	ID=3885;Type=deletion;Left=chr7:140066224-140066780;Right=chr7:140255041-140255672
chr7	CG	SV	140255041	140255672	91	+	.	ID=3885;Type=deletion;Left=chr7:140066224-140066780;Right=chr7:140255041-140255672
chr7	CG	SV	141407118	141433925	14	.	.	ID=3883;Type=deletion;Left=chr7:141407118-141407855+;Right=chr7:141433458-141433925+;Distance=26340;DiscordantMatePairAlignments=14;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_004668:+;RightGenes=NM_004668:+;XRef=;Frequency=0.47
chr7	CG	SV	141407118	141407855	14	+	.	ID=3883;Type=deletion;Left=chr7:141407118-141407855;Right=chr7:141433458-141433925
chr7	CG	SV	141433458	141433925	14	+	.	ID=3883;Type=deletion;Left=chr7:141407118-141407855;Right=chr7:141433458-141433925
chr7	CG	SV	141726639	141727499	11	.	.	ID=3882;Type=deletion;Left=chr7:141726639-141727321+;Right=chr7:141726977-141727499+;Distance=338;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67244646 (chr7:141726629-141726967);Frequency=1.00
chr7	CG	SV	141726639	141727321	11	+	.	ID=3882;Type=deletion;Left=chr7:141726639-141727321;Right=chr7:141726977-141727499
chr7	CG	SV	141726977	141727499	11	+	.	ID=3882;Type=deletion;Left=chr7:141726639-141727321;Right=chr7:141726977-141727499
chr7	CG	SV	143468426	143475646	157	.	.	ID=3881;Type=deletion;Left=chr7:143468426-143469001+;Right=chr7:143475011-143475646+;Distance=6585;DiscordantMatePairAlignments=157;LeftRepeat=Self chain;RightRepeat=L1M3e:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	143468426	143469001	157	+	.	ID=3881;Type=deletion;Left=chr7:143468426-143469001;Right=chr7:143475011-143475646
chr7	CG	SV	143475011	143475646	157	+	.	ID=3881;Type=deletion;Left=chr7:143468426-143469001;Right=chr7:143475011-143475646
chr7	CG	SV	144547817	144552834	86	.	.	ID=3880;Type=deletion;Left=chr7:144547817-144548455+;Right=chr7:144552334-144552834+;Distance=4517;DiscordantMatePairAlignments=86;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr7	CG	SV	144547817	144548455	86	+	.	ID=3880;Type=deletion;Left=chr7:144547817-144548455;Right=chr7:144552334-144552834
chr7	CG	SV	144552334	144552834	86	+	.	ID=3880;Type=deletion;Left=chr7:144547817-144548455;Right=chr7:144552334-144552834
chr7	CG	SV	144634401	144650393	261	.	.	ID=3879;Type=deletion;Left=chr7:144634401-144634905+;Right=chr7:144649787-144650393+;Distance=15386;DiscordantMatePairAlignments=261;LeftRepeat=;RightRepeat=HERV16:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	144634401	144634905	261	+	.	ID=3879;Type=deletion;Left=chr7:144634401-144634905;Right=chr7:144649787-144650393
chr7	CG	SV	144649787	144650393	261	+	.	ID=3879;Type=deletion;Left=chr7:144634401-144634905;Right=chr7:144649787-144650393
chr7	CG	SV	144703513	144709224	49	.	.	ID=3878;Type=deletion;Left=chr7:144703513-144704099+;Right=chr7:144708635-144709224+;Distance=5122;DiscordantMatePairAlignments=49;LeftRepeat=L1MD2:LINE:L1;RightRepeat=THE1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	144703513	144704099	49	+	.	ID=3878;Type=deletion;Left=chr7:144703513-144704099;Right=chr7:144708635-144709224
chr7	CG	SV	144708635	144709224	49	+	.	ID=3878;Type=deletion;Left=chr7:144703513-144704099;Right=chr7:144708635-144709224
chr7	CG	SV	147703799	147707890	27	.	.	ID=3877;Type=deletion;Left=chr7:147703799-147704214+;Right=chr7:147707259-147707890+;Distance=3460;DiscordantMatePairAlignments=27;LeftRepeat=AluSg1:SINE:Alu;RightRepeat=;LeftGenes=NM_014141:+;RightGenes=NM_014141:+;XRef=rs71857214 (chr7:147703799-147707258);Frequency=1.00
chr7	CG	SV	147703799	147704214	27	+	.	ID=3877;Type=deletion;Left=chr7:147703799-147704214;Right=chr7:147707259-147707890
chr7	CG	SV	147707259	147707890	27	+	.	ID=3877;Type=deletion;Left=chr7:147703799-147704214;Right=chr7:147707259-147707890
chr7	CG	SV	150349957	150350583	30	.	.	ID=3876;Type=deletion;Left=chr7:150349957-150350571+;Right=chr7:150350444-150350583+;Distance=487;DiscordantMatePairAlignments=30;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=NM_173681:-;RightGenes=NM_173681:-;XRef=;Frequency=0.18
chr7	CG	SV	150349957	150350571	30	+	.	ID=3876;Type=deletion;Left=chr7:150349957-150350571;Right=chr7:150350444-150350583
chr7	CG	SV	150350444	150350583	30	+	.	ID=3876;Type=deletion;Left=chr7:150349957-150350571;Right=chr7:150350444-150350583
chr7	CG	SV	151795880	151796820	28	.	.	ID=3872;Type=deletion;Left=chr7:151795880-151796373+;Right=chr7:151796549-151796820+;Distance=669;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	151795880	151796373	28	+	.	ID=3872;Type=deletion;Left=chr7:151795880-151796373;Right=chr7:151796549-151796820
chr7	CG	SV	151796549	151796820	28	+	.	ID=3872;Type=deletion;Left=chr7:151795880-151796373;Right=chr7:151796549-151796820
chr7	CG	SV	151876298	151877881	20	.	.	ID=3871;Type=deletion;Left=chr7:151876298-151876800+;Right=chr7:151877259-151877881+;Distance=961;DiscordantMatePairAlignments=20;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=FLAM_C:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs68013241 (chr7:151876302-151877263);Frequency=0.71
chr7	CG	SV	151876298	151876800	20	+	.	ID=3871;Type=deletion;Left=chr7:151876298-151876800;Right=chr7:151877259-151877881
chr7	CG	SV	151877259	151877881	20	+	.	ID=3871;Type=deletion;Left=chr7:151876298-151876800;Right=chr7:151877259-151877881
chr7	CG	SV	151912636	151915850	52	.	.	ID=3870;Type=deletion;Left=chr7:151912636-151913027+;Right=chr7:151915249-151915850+;Distance=2613;DiscordantMatePairAlignments=52;LeftRepeat=Self chain;RightRepeat=L1MC3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr7	CG	SV	151912636	151913027	52	+	.	ID=3870;Type=deletion;Left=chr7:151912636-151913027;Right=chr7:151915249-151915850
chr7	CG	SV	151915249	151915850	52	+	.	ID=3870;Type=deletion;Left=chr7:151912636-151913027;Right=chr7:151915249-151915850
chr7	CG	SV	152941071	152942372	143	.	.	ID=3869;Type=deletion;Left=chr7:152941071-152941675+;Right=chr7:152941761-152942372+;Distance=690;DiscordantMatePairAlignments=143;LeftRepeat=Self chain;RightRepeat=L1MC4:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71016803 (chr7:152941071-152941761);Frequency=1.00
chr7	CG	SV	152941071	152941675	143	+	.	ID=3869;Type=deletion;Left=chr7:152941071-152941675;Right=chr7:152941761-152942372
chr7	CG	SV	152941761	152942372	143	+	.	ID=3869;Type=deletion;Left=chr7:152941071-152941675;Right=chr7:152941761-152942372
chr7	CG	SV	153784756	153786517	36	.	.	ID=3868;Type=deletion;Left=chr7:153784756-153785358+;Right=chr7:153786015-153786517+;Distance=1259;DiscordantMatePairAlignments=36;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=NM_001039350:+;NM_001936:+;NM_130797:+;RightGenes=NM_001039350:+;NM_001936:+;NM_130797:+;XRef=rs67517515 (chr7:153784744-153786003);Frequency=0.94
chr7	CG	SV	153784756	153785358	36	+	.	ID=3868;Type=deletion;Left=chr7:153784756-153785358;Right=chr7:153786015-153786517
chr7	CG	SV	153786015	153786517	36	+	.	ID=3868;Type=deletion;Left=chr7:153784756-153785358;Right=chr7:153786015-153786517
chr7	CG	SV	154023035	154030970	37	.	.	ID=3867;Type=deletion;Left=chr7:154023035-154023599+;Right=chr7:154030884-154030970+;Distance=7849;DiscordantMatePairAlignments=37;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_001039350:+;NM_001936:+;NM_130797:+;RightGenes=NM_001039350:+;NM_001936:+;NM_130797:+;XRef=rs71016805 (chr7:154022834-154030686);Frequency=0.53
chr7	CG	SV	154023035	154023599	37	+	.	ID=3867;Type=deletion;Left=chr7:154023035-154023599;Right=chr7:154030884-154030970
chr7	CG	SV	154030884	154030970	37	+	.	ID=3867;Type=deletion;Left=chr7:154023035-154023599;Right=chr7:154030884-154030970
chr7	CG	SV	154079623	154080736	32	.	.	ID=3866;Type=deletion;Left=chr7:154079623-154080122+;Right=chr7:154080392-154080736+;Distance=769;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;Tandem period 109;Tandem period 37;RightRepeat=Self chain;LeftGenes=NM_001039350:+;NM_001936:+;NM_130797:+;RightGenes=NM_001039350:+;NM_001936:+;NM_130797:+;XRef=rs72400603 (chr7:154079476-154080208);Frequency=0.76
chr7	CG	SV	154079623	154080122	32	+	.	ID=3866;Type=deletion;Left=chr7:154079623-154080122;Right=chr7:154080392-154080736
chr7	CG	SV	154080392	154080736	32	+	.	ID=3866;Type=deletion;Left=chr7:154079623-154080122;Right=chr7:154080392-154080736
chr7	CG	SV	156789004	156790068	16	.	.	ID=3859;Type=deletion;Left=chr7:156789004-156789775+;Right=chr7:156789828-156790068+;Distance=824;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	156789004	156789775	16	+	.	ID=3859;Type=deletion;Left=chr7:156789004-156789775;Right=chr7:156789828-156790068
chr7	CG	SV	156789828	156790068	16	+	.	ID=3859;Type=deletion;Left=chr7:156789004-156789775;Right=chr7:156789828-156790068
chr7	CG	SV	157722237	157723913	331	.	.	ID=3855;Type=deletion;Left=chr7:157722237-157723018+;Right=chr7:157723211-157723913+;Distance=974;DiscordantMatePairAlignments=331;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_002847:-;NM_130842:-;NM_130843:-;RightGenes=NM_002847:-;NM_130842:-;NM_130843:-;XRef=rs67815723 (chr7:157722235-157723209);Frequency=0.94
chr7	CG	SV	157722237	157723018	331	+	.	ID=3855;Type=deletion;Left=chr7:157722237-157723018;Right=chr7:157723211-157723913
chr7	CG	SV	157723211	157723913	331	+	.	ID=3855;Type=deletion;Left=chr7:157722237-157723018;Right=chr7:157723211-157723913
chr7	CG	SV	157739396	157740656	181	.	.	ID=3854;Type=deletion;Left=chr7:157739396-157740070+;Right=chr7:157740139-157740656+;Distance=743;DiscordantMatePairAlignments=181;LeftRepeat=Self chain;Tandem period 74;RightRepeat=Self chain;Tandem period 74;LeftGenes=NM_002847:-;NM_130842:-;NM_130843:-;RightGenes=NM_002847:-;NM_130842:-;NM_130843:-;XRef=rs67809280 (chr7:157739419-157740162);Frequency=0.76
chr7	CG	SV	157739396	157740070	181	+	.	ID=3854;Type=deletion;Left=chr7:157739396-157740070;Right=chr7:157740139-157740656
chr7	CG	SV	157740139	157740656	181	+	.	ID=3854;Type=deletion;Left=chr7:157739396-157740070;Right=chr7:157740139-157740656
chr7	CG	SV	158080436	158080740	83	.	.	ID=1587;Type=tandem-duplication;Left=chr7:158080436-158080600-;Right=chr7:158080633-158080740-;Distance=140;DiscordantMatePairAlignments=83;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr7	CG	SV	158080436	158080600	83	-	.	ID=1587;Type=tandem-duplication;Left=chr7:158080436-158080600;Right=chr7:158080633-158080740
chr7	CG	SV	158080633	158080740	83	-	.	ID=1587;Type=tandem-duplication;Left=chr7:158080436-158080600;Right=chr7:158080633-158080740
chr7	CG	SV	158691756	158692894	93	.	.	ID=3848;Type=deletion;Left=chr7:158691756-158692252+;Right=chr7:158692613-158692894+;Distance=857;DiscordantMatePairAlignments=93;LeftRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;Tandem period 32;Tandem period 61;RightRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;Tandem period 32;Tandem period 61;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr7	CG	SV	158691756	158692252	93	+	.	ID=3848;Type=deletion;Left=chr7:158691756-158692252;Right=chr7:158692613-158692894
chr7	CG	SV	158692613	158692894	93	+	.	ID=3848;Type=deletion;Left=chr7:158691756-158692252;Right=chr7:158692613-158692894
chr7	CG	SV	158803030	158817941	127	.	.	ID=3846;Type=deletion;Left=chr7:158803030-158803990+;Right=chr7:158817340-158817941+;Distance=14310;DiscordantMatePairAlignments=127;LeftRepeat=MER57A:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr7	CG	SV	158803030	158803990	127	+	.	ID=3846;Type=deletion;Left=chr7:158803030-158803990;Right=chr7:158817340-158817941
chr7	CG	SV	158817340	158817941	127	+	.	ID=3846;Type=deletion;Left=chr7:158803030-158803990;Right=chr7:158817340-158817941
chr8	CG	SV	584397	590070	143	.	.	ID=3845;Type=deletion;Left=chr8:584397-584985+;Right=chr8:589414-590070+;Distance=5017;DiscordantMatePairAlignments=143;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66630184 (chr8:584400-589414);Frequency=0.88
chr8	CG	SV	584397	584985	143	+	.	ID=3845;Type=deletion;Left=chr8:584397-584985;Right=chr8:589414-590070
chr8	CG	SV	589414	590070	143	+	.	ID=3845;Type=deletion;Left=chr8:584397-584985;Right=chr8:589414-590070
chr8	CG	SV	654026	655021	13	.	.	ID=3844;Type=deletion;Left=chr8:654026-654297+;Right=chr8:654800-655021+;Distance=774;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 43;RightRepeat=Self chain;Tandem period 43;LeftGenes=NM_207332:-;RightGenes=NM_207332:-;XRef=;Frequency=0.35
chr8	CG	SV	654026	654297	13	+	.	ID=3844;Type=deletion;Left=chr8:654026-654297;Right=chr8:654800-655021
chr8	CG	SV	654800	655021	13	+	.	ID=3844;Type=deletion;Left=chr8:654026-654297;Right=chr8:654800-655021
chr8	CG	SV	951194	955495	46	.	.	ID=3842;Type=deletion;Left=chr8:951194-951663+;Right=chr8:955049-955495+;Distance=3855;DiscordantMatePairAlignments=46;LeftRepeat=SegDup;Self chain;Tandem period 33;Tandem period 64;Tandem period 97;RightRepeat=Self chain;Tandem period 33;Tandem period 64;Tandem period 97;LeftGenes=;RightGenes=;XRef=rs71855433 (chr8:950994-954851);Frequency=0.35
chr8	CG	SV	951194	951663	46	+	.	ID=3842;Type=deletion;Left=chr8:951194-951663;Right=chr8:955049-955495
chr8	CG	SV	955049	955495	46	+	.	ID=3842;Type=deletion;Left=chr8:951194-951663;Right=chr8:955049-955495
chr8	CG	SV	1101270	1101737	20	.	.	ID=1586;Type=tandem-duplication;Left=chr8:1101270-1101509-;Right=chr8:1101606-1101737-;Distance=228;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;Tandem period 45;RightRepeat=Self chain;Tandem period 45;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr8	CG	SV	1101270	1101509	20	-	.	ID=1586;Type=tandem-duplication;Left=chr8:1101270-1101509;Right=chr8:1101606-1101737
chr8	CG	SV	1101606	1101737	20	-	.	ID=1586;Type=tandem-duplication;Left=chr8:1101270-1101509;Right=chr8:1101606-1101737
chr8	CG	SV	1310801	1311937	16	.	.	ID=3840;Type=deletion;Left=chr8:1310801-1311174+;Right=chr8:1311719-1311937+;Distance=918;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 54;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr8	CG	SV	1310801	1311174	16	+	.	ID=3840;Type=deletion;Left=chr8:1310801-1311174;Right=chr8:1311719-1311937
chr8	CG	SV	1311719	1311937	16	+	.	ID=3840;Type=deletion;Left=chr8:1310801-1311174;Right=chr8:1311719-1311937
chr8	CG	SV	1733840	1734792	103	.	.	ID=3839;Type=deletion;Left=chr8:1733840-1734500+;Right=chr8:1734357-1734792+;Distance=517;DiscordantMatePairAlignments=103;LeftRepeat=Self chain;Tandem period 37;RightRepeat=Self chain;Tandem period 37;LeftGenes=;RightGenes=;XRef=rs71843993 (chr8:1733872-1734353);Frequency=0.88
chr8	CG	SV	1733840	1734500	103	+	.	ID=3839;Type=deletion;Left=chr8:1733840-1734500;Right=chr8:1734357-1734792
chr8	CG	SV	1734357	1734792	103	+	.	ID=3839;Type=deletion;Left=chr8:1733840-1734500;Right=chr8:1734357-1734792
chr8	CG	SV	2203030	2204172	73	.	.	ID=3836;Type=deletion;Left=chr8:2203030-2203844+;Right=chr8:2203552-2204172+;Distance=522;DiscordantMatePairAlignments=73;LeftRepeat=Self chain;Tandem period 87;RightRepeat=Self chain;Tandem period 87;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	2203030	2203844	73	+	.	ID=3836;Type=deletion;Left=chr8:2203030-2203844;Right=chr8:2203552-2204172
chr8	CG	SV	2203552	2204172	73	+	.	ID=3836;Type=deletion;Left=chr8:2203030-2203844;Right=chr8:2203552-2204172
chr8	CG	SV	8423461	8424695	43	.	.	ID=3834;Type=deletion;Left=chr8:8423461-8424105+;Right=chr8:8424375-8424695+;Distance=914;DiscordantMatePairAlignments=43;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=FRAM:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72459952 (chr8:8423440-8424354);Frequency=0.82
chr8	CG	SV	8423461	8424105	43	+	.	ID=3834;Type=deletion;Left=chr8:8423461-8424105;Right=chr8:8424375-8424695
chr8	CG	SV	8424375	8424695	43	+	.	ID=3834;Type=deletion;Left=chr8:8423461-8424105;Right=chr8:8424375-8424695
chr8	CG	SV	8764151	8766691	57	.	.	ID=3833;Type=deletion;Left=chr8:8764151-8764824+;Right=chr8:8766092-8766691+;Distance=1941;DiscordantMatePairAlignments=57;LeftRepeat=Self chain;RightRepeat=MIRb:SINE:MIR;Self chain;LeftGenes=NM_004225:-;RightGenes=NM_004225:-;XRef=;Frequency=0.00
chr8	CG	SV	8764151	8764824	57	+	.	ID=3833;Type=deletion;Left=chr8:8764151-8764824;Right=chr8:8766092-8766691
chr8	CG	SV	8766092	8766691	57	+	.	ID=3833;Type=deletion;Left=chr8:8764151-8764824;Right=chr8:8766092-8766691
chr8	CG	SV	11282971	11285241	107	.	.	ID=3832;Type=deletion;Left=chr8:11282971-11283694+;Right=chr8:11284620-11285241+;Distance=1649;DiscordantMatePairAlignments=107;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_026814:+;RightGenes=NR_026814:+;XRef=;Frequency=0.82
chr8	CG	SV	11282971	11283694	107	+	.	ID=3832;Type=deletion;Left=chr8:11282971-11283694;Right=chr8:11284620-11285241
chr8	CG	SV	11284620	11285241	107	+	.	ID=3832;Type=deletion;Left=chr8:11282971-11283694;Right=chr8:11284620-11285241
chr8	CG	SV	18498900	18500781	94	.	.	ID=3827;Type=deletion;Left=chr8:18498900-18499501+;Right=chr8:18500233-18500781+;Distance=1333;DiscordantMatePairAlignments=94;LeftRepeat=L1HS:LINE:L1;L1M3:LINE:L1;RightRepeat=L1M3:LINE:L1;LeftGenes=NM_015310:-;NM_206909:-;RightGenes=NM_015310:-;NM_206909:-;XRef=rs71189488 (chr8:18498900-18500233);Frequency=1.00
chr8	CG	SV	18498900	18499501	94	+	.	ID=3827;Type=deletion;Left=chr8:18498900-18499501;Right=chr8:18500233-18500781
chr8	CG	SV	18500233	18500781	94	+	.	ID=3827;Type=deletion;Left=chr8:18498900-18499501;Right=chr8:18500233-18500781
chr8	CG	SV	18695738	18697211	155	.	.	ID=3826;Type=deletion;Left=chr8:18695738-18696292+;Right=chr8:18696712-18697211+;Distance=974;DiscordantMatePairAlignments=155;LeftRepeat=LTR5_Hs:LTR:ERVK;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=NM_015310:-;NM_206909:-;RightGenes=NM_015310:-;NM_206909:-;XRef=rs67390803 (chr8:18695731-18696705);Frequency=1.00
chr8	CG	SV	18695738	18696292	155	+	.	ID=3826;Type=deletion;Left=chr8:18695738-18696292;Right=chr8:18696712-18697211
chr8	CG	SV	18696712	18697211	155	+	.	ID=3826;Type=deletion;Left=chr8:18695738-18696292;Right=chr8:18696712-18697211
chr8	CG	SV	20987684	20988273	12	.	.	ID=3825;Type=deletion;Left=chr8:20987684-20988350+;Right=chr8:20988087-20988273+;Distance=403;DiscordantMatePairAlignments=12;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr8	CG	SV	20987684	20988350	12	+	.	ID=3825;Type=deletion;Left=chr8:20987684-20988350;Right=chr8:20988087-20988273
chr8	CG	SV	20988087	20988273	12	+	.	ID=3825;Type=deletion;Left=chr8:20987684-20988350;Right=chr8:20988087-20988273
chr8	CG	SV	21353745	21354536	12	.	.	ID=1584;Type=tandem-duplication;Left=chr8:21353745-21353936-;Right=chr8:21354076-21354536-;Distance=600;DiscordantMatePairAlignments=12;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=L1ME3B:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr8	CG	SV	21353745	21353936	12	-	.	ID=1584;Type=tandem-duplication;Left=chr8:21353745-21353936;Right=chr8:21354076-21354536
chr8	CG	SV	21354076	21354536	12	-	.	ID=1584;Type=tandem-duplication;Left=chr8:21353745-21353936;Right=chr8:21354076-21354536
chr8	CG	SV	25122602	25127250	146	.	.	ID=3823;Type=deletion;Left=chr8:25122602-25123247+;Right=chr8:25126576-25127250+;Distance=3974;DiscordantMatePairAlignments=146;LeftRepeat=;RightRepeat=;LeftGenes=NM_024940:+;RightGenes=NM_024940:+;XRef=rs71640594 (chr8:25122595-25126569);Frequency=1.00
chr8	CG	SV	25122602	25123247	146	+	.	ID=3823;Type=deletion;Left=chr8:25122602-25123247;Right=chr8:25126576-25127250
chr8	CG	SV	25126576	25127250	146	+	.	ID=3823;Type=deletion;Left=chr8:25122602-25123247;Right=chr8:25126576-25127250
chr8	CG	SV	32799551	32811454	104	.	.	ID=3819;Type=deletion;Left=chr8:32799551-32800057+;Right=chr8:32810807-32811454+;Distance=11256;DiscordantMatePairAlignments=104;LeftRepeat=MLT1I:LTR:MaLR;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	32799551	32800057	104	+	.	ID=3819;Type=deletion;Left=chr8:32799551-32800057;Right=chr8:32810807-32811454
chr8	CG	SV	32810807	32811454	104	+	.	ID=3819;Type=deletion;Left=chr8:32799551-32800057;Right=chr8:32810807-32811454
chr8	CG	SV	36078419	36081845	44	.	.	ID=465;Type=complex;Left=chr8:36078419-36078973-;Right=chr8:36081402-36081845+;Distance=2429;DiscordantMatePairAlignments=44;LeftRepeat=AluJo:SINE:Alu;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	36078419	36078973	44	-	.	ID=465;Type=complex;Left=chr8:36078419-36078973;Right=chr8:36081402-36081845
chr8	CG	SV	36081402	36081845	44	-	.	ID=465;Type=complex;Left=chr8:36078419-36078973;Right=chr8:36081402-36081845
chr8	CG	SV	36080521	36081914	57	.	.	ID=3818;Type=complex;Left=chr8:36080521-36081104+;Right=chr8:36081402-36081914+;Distance=881;DiscordantMatePairAlignments=57;LeftRepeat=;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	36080521	36081104	57	+	.	ID=3818;Type=complex;Left=chr8:36080521-36081104;Right=chr8:36081402-36081914
chr8	CG	SV	36081402	36081914	57	+	.	ID=3818;Type=complex;Left=chr8:36080521-36081104;Right=chr8:36081402-36081914
chr8	CG	SV	36141670	36142192	17	+	.	ID=2895;Type=interchromosomal;Left=chr8:36141670-36142192+;Right=chrX:69663172-69664040+;Distance=;DiscordantMatePairAlignments=17;LeftRepeat=AluSx:SINE:Alu;Tandem A;RightRepeat=L1MC4:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	69663172	69664040	17	+	.	ID=2895;Type=interchromosomal;Left=chr8:36141670-36142192+;Right=chrX:69663172-69664040+;Distance=;DiscordantMatePairAlignments=17;LeftRepeat=AluSx:SINE:Alu;Tandem A;RightRepeat=L1MC4:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	37170043	37171677	304	.	.	ID=3817;Type=deletion;Left=chr8:37170043-37170676+;Right=chr8:37171017-37171677+;Distance=974;DiscordantMatePairAlignments=304;LeftRepeat=LTR5_Hs:LTR:ERVK;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66959643 (chr8:37170043-37171017);Frequency=1.00
chr8	CG	SV	37170043	37170676	304	+	.	ID=3817;Type=deletion;Left=chr8:37170043-37170676;Right=chr8:37171017-37171677
chr8	CG	SV	37171017	37171677	304	+	.	ID=3817;Type=deletion;Left=chr8:37170043-37170676;Right=chr8:37171017-37171677
chr8	CG	SV	39351231	39506838	92	.	.	ID=3816;Type=deletion;Left=chr8:39351231-39351762+;Right=chr8:39506385-39506838+;Distance=155154;DiscordantMatePairAlignments=92;LeftRepeat=AluY:SINE:Alu;RightRepeat=L1ME2:LINE:L1;Self chain;LeftGenes=NR_001448:+;RightGenes=;XRef=;Frequency=0.71
chr8	CG	SV	39351231	39351762	92	+	.	ID=3816;Type=deletion;Left=chr8:39351231-39351762;Right=chr8:39506385-39506838
chr8	CG	SV	39506385	39506838	92	+	.	ID=3816;Type=deletion;Left=chr8:39351231-39351762;Right=chr8:39506385-39506838
chr8	CG	SV	42309677	42313946	45	.	.	ID=3812;Type=deletion;Left=chr8:42309677-42310301+;Right=chr8:42313640-42313946+;Distance=3963;DiscordantMatePairAlignments=45;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67189271 (chr8:42309546-42313509);Frequency=1.00
chr8	CG	SV	42309677	42310301	45	+	.	ID=3812;Type=deletion;Left=chr8:42309677-42310301;Right=chr8:42313640-42313946
chr8	CG	SV	42313640	42313946	45	+	.	ID=3812;Type=deletion;Left=chr8:42309677-42310301;Right=chr8:42313640-42313946
chr8	CG	SV	47636480	87780334	26	.	.	ID=464;Type=probable-inversion;Left=chr8:47636480-47636898-;Right=chr8:87779755-87780334+;Distance=40142857;DiscordantMatePairAlignments=26;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_019098:-;XRef=;Frequency=0.59
chr8	CG	SV	47636480	47636898	26	-	.	ID=464;Type=probable-inversion;Left=chr8:47636480-47636898;Right=chr8:87779755-87780334
chr8	CG	SV	87779755	87780334	26	-	.	ID=464;Type=probable-inversion;Left=chr8:47636480-47636898;Right=chr8:87779755-87780334
chr8	CG	SV	52895178	52895827	15	.	.	ID=5509;Type=probable-inversion;Left=chr8:52895178-52895630+;Right=chr8:52895284-52895827-;Distance=649;DiscordantMatePairAlignments=15;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_052937:-;RightGenes=NM_052937:-;XRef=;Frequency=0.65
chr8	CG	SV	52895178	52895630	15	+	.	ID=5509;Type=probable-inversion;Left=chr8:52895178-52895630;Right=chr8:52895284-52895827
chr8	CG	SV	52895284	52895827	15	+	.	ID=5509;Type=probable-inversion;Left=chr8:52895178-52895630;Right=chr8:52895284-52895827
chr8	CG	SV	58278344	58285598	116	.	.	ID=1579;Type=complex;Left=chr8:58278344-58278874-;Right=chr8:58284954-58285598-;Distance=6724;DiscordantMatePairAlignments=116;LeftRepeat=MER50:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58278344	58278874	116	-	.	ID=1579;Type=complex;Left=chr8:58278344-58278874;Right=chr8:58284954-58285598
chr8	CG	SV	58284954	58285598	116	-	.	ID=1579;Type=complex;Left=chr8:58278344-58278874;Right=chr8:58284954-58285598
chr8	CG	SV	58279458	58281257	90	.	.	ID=3804;Type=complex;Left=chr8:58279458-58279954+;Right=chr8:58280832-58281257+;Distance=1374;DiscordantMatePairAlignments=90;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58279458	58279954	90	+	.	ID=3804;Type=complex;Left=chr8:58279458-58279954;Right=chr8:58280832-58281257
chr8	CG	SV	58280832	58281257	90	+	.	ID=3804;Type=complex;Left=chr8:58279458-58279954;Right=chr8:58280832-58281257
chr8	CG	SV	58280254	58290572	170	.	.	ID=1577;Type=complex;Left=chr8:58280254-58280822-;Right=chr8:58289979-58290572-;Distance=9750;DiscordantMatePairAlignments=170;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58280254	58280822	170	-	.	ID=1577;Type=complex;Left=chr8:58280254-58280822;Right=chr8:58289979-58290572
chr8	CG	SV	58289979	58290572	170	-	.	ID=1577;Type=complex;Left=chr8:58280254-58280822;Right=chr8:58289979-58290572
chr8	CG	SV	58285605	58290543	402	.	.	ID=3803;Type=complex;Left=chr8:58285605-58286142+;Right=chr8:58289986-58290543+;Distance=4381;DiscordantMatePairAlignments=402;LeftRepeat=Self chain;RightRepeat=MER50:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	58285605	58286142	402	+	.	ID=3803;Type=complex;Left=chr8:58285605-58286142;Right=chr8:58289986-58290543
chr8	CG	SV	58289986	58290543	402	+	.	ID=3803;Type=complex;Left=chr8:58285605-58286142;Right=chr8:58289986-58290543
chr8	CG	SV	58334567	58335451	33	.	.	ID=1574;Type=tandem-duplication;Left=chr8:58334567-58334981-;Right=chr8:58335002-58335451-;Distance=470;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr8	CG	SV	58334567	58334981	33	-	.	ID=1574;Type=tandem-duplication;Left=chr8:58334567-58334981;Right=chr8:58335002-58335451
chr8	CG	SV	58335002	58335451	33	-	.	ID=1574;Type=tandem-duplication;Left=chr8:58334567-58334981;Right=chr8:58335002-58335451
chr8	CG	SV	59241018	59241995	16	.	.	ID=3802;Type=deletion;Left=chr8:59241018-59241602+;Right=chr8:59241354-59241995+;Distance=336;DiscordantMatePairAlignments=16;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67243806 (chr8:59241018-59241354);Frequency=1.00
chr8	CG	SV	59241018	59241602	16	+	.	ID=3802;Type=deletion;Left=chr8:59241018-59241602;Right=chr8:59241354-59241995
chr8	CG	SV	59241354	59241995	16	+	.	ID=3802;Type=deletion;Left=chr8:59241018-59241602;Right=chr8:59241354-59241995
chr8	CG	SV	61367551	61368523	11	.	.	ID=3801;Type=deletion;Left=chr8:61367551-61368145+;Right=chr8:61367868-61368523+;Distance=317;DiscordantMatePairAlignments=11;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs33938822 (chr8:61367551-61367868);Frequency=0.76
chr8	CG	SV	61367551	61368145	11	+	.	ID=3801;Type=deletion;Left=chr8:61367551-61368145;Right=chr8:61367868-61368523
chr8	CG	SV	61367868	61368523	11	+	.	ID=3801;Type=deletion;Left=chr8:61367551-61368145;Right=chr8:61367868-61368523
chr8	CG	SV	62197914	62199020	110	.	.	ID=3800;Type=deletion;Left=chr8:62197914-62198565+;Right=chr8:62198446-62199020+;Distance=532;DiscordantMatePairAlignments=110;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr8	CG	SV	62197914	62198565	110	+	.	ID=3800;Type=deletion;Left=chr8:62197914-62198565;Right=chr8:62198446-62199020
chr8	CG	SV	62198446	62199020	110	+	.	ID=3800;Type=deletion;Left=chr8:62197914-62198565;Right=chr8:62198446-62199020
chr8	CG	SV	73185930	73186930	17	.	.	ID=463;Type=probable-inversion;Left=chr8:73185930-73186173-;Right=chr8:73186418-73186930+;Distance=245;DiscordantMatePairAlignments=17;LeftRepeat=L1MA4A:LINE:L1;Self chain;RightRepeat=L1MA4A:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr8	CG	SV	73185930	73186173	17	-	.	ID=463;Type=probable-inversion;Left=chr8:73185930-73186173;Right=chr8:73186418-73186930
chr8	CG	SV	73186418	73186930	17	-	.	ID=463;Type=probable-inversion;Left=chr8:73185930-73186173;Right=chr8:73186418-73186930
chr8	CG	SV	73950329	73956983	171	.	.	ID=3793;Type=deletion;Left=chr8:73950329-73950953+;Right=chr8:73956387-73956983+;Distance=6058;DiscordantMatePairAlignments=171;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_004770:+;RightGenes=NM_004770:+;XRef=rs71640573 (chr8:73950319-73956377);Frequency=1.00
chr8	CG	SV	73950329	73950953	171	+	.	ID=3793;Type=deletion;Left=chr8:73950329-73950953;Right=chr8:73956387-73956983
chr8	CG	SV	73956387	73956983	171	+	.	ID=3793;Type=deletion;Left=chr8:73950329-73950953;Right=chr8:73956387-73956983
chr8	CG	SV	75525426	75529981	49	.	.	ID=3791;Type=deletion;Left=chr8:75525426-75525816+;Right=chr8:75529517-75529981+;Distance=4091;DiscordantMatePairAlignments=49;LeftRepeat=L1MEb:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr8	CG	SV	75525426	75525816	49	+	.	ID=3791;Type=deletion;Left=chr8:75525426-75525816;Right=chr8:75529517-75529981
chr8	CG	SV	75529517	75529981	49	+	.	ID=3791;Type=deletion;Left=chr8:75525426-75525816;Right=chr8:75529517-75529981
chr8	CG	SV	77499940	77501740	254	.	.	ID=3790;Type=deletion;Left=chr8:77499940-77500580+;Right=chr8:77500985-77501740+;Distance=1045;DiscordantMatePairAlignments=254;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66858940 (chr8:77499940-77500985);Frequency=0.94
chr8	CG	SV	77499940	77500580	254	+	.	ID=3790;Type=deletion;Left=chr8:77499940-77500580;Right=chr8:77500985-77501740
chr8	CG	SV	77500985	77501740	254	+	.	ID=3790;Type=deletion;Left=chr8:77499940-77500580;Right=chr8:77500985-77501740
chr8	CG	SV	97167260	97167858	10	.	.	ID=3784;Type=complex;Left=chr8:97167260-97167934+;Right=chr8:97167612-97167858+;Distance=352;DiscordantMatePairAlignments=10;LeftRepeat=MIRb:SINE:MIR;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	97167260	97167934	10	+	.	ID=3784;Type=complex;Left=chr8:97167260-97167934;Right=chr8:97167612-97167858
chr8	CG	SV	97167612	97167858	10	+	.	ID=3784;Type=complex;Left=chr8:97167260-97167934;Right=chr8:97167612-97167858
chr8	CG	SV	97167264	97168225	21	.	.	ID=3785;Type=complex;Left=chr8:97167264-97167890+;Right=chr8:97167616-97168225+;Distance=352;DiscordantMatePairAlignments=21;LeftRepeat=AluY:SINE:Alu;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs10528502 (chr8:97167264-97167616);Frequency=1.00
chr8	CG	SV	97167264	97167890	21	+	.	ID=3785;Type=complex;Left=chr8:97167264-97167890;Right=chr8:97167616-97168225
chr8	CG	SV	97167616	97168225	21	+	.	ID=3785;Type=complex;Left=chr8:97167264-97167890;Right=chr8:97167616-97168225
chr8	CG	SV	98664585	98665522	17	.	.	ID=3783;Type=deletion;Left=chr8:98664585-98665236+;Right=chr8:98664924-98665522+;Distance=339;DiscordantMatePairAlignments=17;LeftRepeat=Tandem T;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=rs35122468 (chr8:98664585-98664924);Frequency=1.00
chr8	CG	SV	98664585	98665236	17	+	.	ID=3783;Type=deletion;Left=chr8:98664585-98665236;Right=chr8:98664924-98665522
chr8	CG	SV	98664924	98665522	17	+	.	ID=3783;Type=deletion;Left=chr8:98664585-98665236;Right=chr8:98664924-98665522
chr8	CG	SV	108189410	108190354	10	.	.	ID=3779;Type=deletion;Left=chr8:108189410-108190075+;Right=chr8:108189732-108190354+;Distance=322;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67681243 (chr8:108189391-108189713);Frequency=1.00
chr8	CG	SV	108189410	108190075	10	+	.	ID=3779;Type=deletion;Left=chr8:108189410-108190075;Right=chr8:108189732-108190354
chr8	CG	SV	108189732	108190354	10	+	.	ID=3779;Type=deletion;Left=chr8:108189410-108190075;Right=chr8:108189732-108190354
chr8	CG	SV	112363228	112366851	91	.	.	ID=3777;Type=deletion;Left=chr8:112363228-112363840+;Right=chr8:112366316-112366851+;Distance=3088;DiscordantMatePairAlignments=91;LeftRepeat=;RightRepeat=MLT-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67753424 (chr8:112363228-112366316);Frequency=0.88
chr8	CG	SV	112363228	112363840	91	+	.	ID=3777;Type=deletion;Left=chr8:112363228-112363840;Right=chr8:112366316-112366851
chr8	CG	SV	112366316	112366851	91	+	.	ID=3777;Type=deletion;Left=chr8:112363228-112363840;Right=chr8:112366316-112366851
chr8	CG	SV	113154612	113155737	17	.	.	ID=3775;Type=deletion;Left=chr8:113154612-113154969+;Right=chr8:113154942-113155737+;Distance=330;DiscordantMatePairAlignments=17;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=L1M2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr8	CG	SV	113154612	113154969	17	+	.	ID=3775;Type=deletion;Left=chr8:113154612-113154969;Right=chr8:113154942-113155737
chr8	CG	SV	113154942	113155737	17	+	.	ID=3775;Type=deletion;Left=chr8:113154612-113154969;Right=chr8:113154942-113155737
chr8	CG	SV	118942919	118944518	20	.	.	ID=5492;Type=complex;Left=chr8:118942919-118943432+;Right=chr8:118944402-118944518-;Distance=1599;DiscordantMatePairAlignments=20;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_000127:-;RightGenes=NM_000127:-;XRef=;Frequency=0.59
chr8	CG	SV	118942919	118943432	20	+	.	ID=5492;Type=complex;Left=chr8:118942919-118943432;Right=chr8:118944402-118944518
chr8	CG	SV	118944402	118944518	20	+	.	ID=5492;Type=complex;Left=chr8:118942919-118943432;Right=chr8:118944402-118944518
chr8	CG	SV	118942919	118945281	71	.	.	ID=3772;Type=complex;Left=chr8:118942919-118943358+;Right=chr8:118944774-118945281+;Distance=1855;DiscordantMatePairAlignments=71;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_000127:-;RightGenes=NM_000127:-;XRef=;Frequency=0.59
chr8	CG	SV	118942919	118943358	71	+	.	ID=3772;Type=complex;Left=chr8:118942919-118943358;Right=chr8:118944774-118945281
chr8	CG	SV	118944774	118945281	71	+	.	ID=3772;Type=complex;Left=chr8:118942919-118943358;Right=chr8:118944774-118945281
chr8	CG	SV	121750866	121751970	13	.	.	ID=3770;Type=deletion;Left=chr8:121750866-121751456+;Right=chr8:121751185-121751970+;Distance=319;DiscordantMatePairAlignments=13;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MER5A1:DNA:MER1_type;LeftGenes=NM_021021:-;RightGenes=NM_021021:-;XRef=rs67216429 (chr8:121750866-121751185);Frequency=0.65
chr8	CG	SV	121750866	121751456	13	+	.	ID=3770;Type=deletion;Left=chr8:121750866-121751456;Right=chr8:121751185-121751970
chr8	CG	SV	121751185	121751970	13	+	.	ID=3770;Type=deletion;Left=chr8:121750866-121751456;Right=chr8:121751185-121751970
chr8	CG	SV	124426774	124524454	22	.	.	ID=3766;Type=deletion;Left=chr8:124426774-124427283+;Right=chr8:124524002-124524454+;Distance=97228;DiscordantMatePairAlignments=22;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_014109:-;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	124426774	124427283	22	+	.	ID=3766;Type=deletion;Left=chr8:124426774-124427283;Right=chr8:124524002-124524454
chr8	CG	SV	124524002	124524454	22	+	.	ID=3766;Type=deletion;Left=chr8:124426774-124427283;Right=chr8:124524002-124524454
chr8	CG	SV	126664304	126671103	346	.	.	ID=3765;Type=deletion;Left=chr8:126664304-126664937+;Right=chr8:126670317-126671103+;Distance=6013;DiscordantMatePairAlignments=346;LeftRepeat=;RightRepeat=MER113:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs67543822 (chr8:126664303-126670316);Frequency=1.00
chr8	CG	SV	126664304	126664937	346	+	.	ID=3765;Type=deletion;Left=chr8:126664304-126664937;Right=chr8:126670317-126671103
chr8	CG	SV	126670317	126671103	346	+	.	ID=3765;Type=deletion;Left=chr8:126664304-126664937;Right=chr8:126670317-126671103
chr8	CG	SV	127261392	127264477	94	.	.	ID=3764;Type=deletion;Left=chr8:127261392-127262041+;Right=chr8:127263756-127264477+;Distance=2364;DiscordantMatePairAlignments=94;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72273669 (chr8:127261387-127263752);Frequency=0.59
chr8	CG	SV	127261392	127262041	94	+	.	ID=3764;Type=deletion;Left=chr8:127261392-127262041;Right=chr8:127263756-127264477
chr8	CG	SV	127263756	127264477	94	+	.	ID=3764;Type=deletion;Left=chr8:127261392-127262041;Right=chr8:127263756-127264477
chr8	CG	SV	129534336	129541051	307	.	.	ID=3763;Type=deletion;Left=chr8:129534336-129535111+;Right=chr8:129540449-129541051+;Distance=6113;DiscordantMatePairAlignments=307;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67264625 (chr8:129534335-129540448);Frequency=1.00
chr8	CG	SV	129534336	129535111	307	+	.	ID=3763;Type=deletion;Left=chr8:129534336-129535111;Right=chr8:129540449-129541051
chr8	CG	SV	129540449	129541051	307	+	.	ID=3763;Type=deletion;Left=chr8:129534336-129535111;Right=chr8:129540449-129541051
chr8	CG	SV	131919930	131922514	55	.	.	ID=3762;Type=deletion;Left=chr8:131919930-131920489+;Right=chr8:131921918-131922514+;Distance=1988;DiscordantMatePairAlignments=55;LeftRepeat=;RightRepeat=;LeftGenes=NM_001115:-;RightGenes=NM_001115:-;XRef=rs71812592 (chr8:131919932-131921920);Frequency=0.47
chr8	CG	SV	131919930	131920489	55	+	.	ID=3762;Type=deletion;Left=chr8:131919930-131920489;Right=chr8:131921918-131922514
chr8	CG	SV	131921918	131922514	55	+	.	ID=3762;Type=deletion;Left=chr8:131919930-131920489;Right=chr8:131921918-131922514
chr8	CG	SV	131978724	131979821	15	.	.	ID=452;Type=probable-inversion;Left=chr8:131978724-131979182-;Right=chr8:131979750-131979821+;Distance=568;DiscordantMatePairAlignments=15;LeftRepeat=(CATA)n:Simple_repeat:Simple_repeat;Tandem period 8;RightRepeat=;LeftGenes=NM_001115:-;RightGenes=NM_001115:-;XRef=;Frequency=0.94
chr8	CG	SV	131978724	131979182	15	-	.	ID=452;Type=probable-inversion;Left=chr8:131978724-131979182;Right=chr8:131979750-131979821
chr8	CG	SV	131979750	131979821	15	-	.	ID=452;Type=probable-inversion;Left=chr8:131978724-131979182;Right=chr8:131979750-131979821
chr8	CG	SV	135152111	135158819	38	.	.	ID=3759;Type=deletion;Left=chr8:135152111-135152530+;Right=chr8:135158213-135158819+;Distance=6102;DiscordantMatePairAlignments=38;LeftRepeat=L1MEe:LINE:L1;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66697932 (chr8:135152111-135158213);Frequency=0.53
chr8	CG	SV	135152111	135152530	38	+	.	ID=3759;Type=deletion;Left=chr8:135152111-135152530;Right=chr8:135158213-135158819
chr8	CG	SV	135158213	135158819	38	+	.	ID=3759;Type=deletion;Left=chr8:135152111-135152530;Right=chr8:135158213-135158819
chr8	CG	SV	137229379	137233548	135	.	.	ID=3757;Type=deletion;Left=chr8:137229379-137230020+;Right=chr8:137233082-137233548+;Distance=3703;DiscordantMatePairAlignments=135;LeftRepeat=ERVL-E:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67361622 (chr8:137229377-137233080);Frequency=1.00
chr8	CG	SV	137229379	137230020	135	+	.	ID=3757;Type=deletion;Left=chr8:137229379-137230020;Right=chr8:137233082-137233548
chr8	CG	SV	137233082	137233548	135	+	.	ID=3757;Type=deletion;Left=chr8:137229379-137230020;Right=chr8:137233082-137233548
chr8	CG	SV	138812149	138813670	263	.	.	ID=3756;Type=deletion;Left=chr8:138812149-138812830+;Right=chr8:138813045-138813670+;Distance=896;DiscordantMatePairAlignments=263;LeftRepeat=MSTB:LTR:MaLR;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs67866144 (chr8:138812147-138813043);Frequency=1.00
chr8	CG	SV	138812149	138812830	263	+	.	ID=3756;Type=deletion;Left=chr8:138812149-138812830;Right=chr8:138813045-138813670
chr8	CG	SV	138813045	138813670	263	+	.	ID=3756;Type=deletion;Left=chr8:138812149-138812830;Right=chr8:138813045-138813670
chr8	CG	SV	143395366	143397262	73	.	.	ID=3747;Type=deletion;Left=chr8:143395366-143395844+;Right=chr8:143396564-143397262+;Distance=1198;DiscordantMatePairAlignments=73;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 36;Tandem period 72;LeftGenes=NM_145003:-;RightGenes=NM_145003:-;XRef=;Frequency=0.00
chr8	CG	SV	143395366	143395844	73	+	.	ID=3747;Type=deletion;Left=chr8:143395366-143395844;Right=chr8:143396564-143397262
chr8	CG	SV	143396564	143397262	73	+	.	ID=3747;Type=deletion;Left=chr8:143395366-143395844;Right=chr8:143396564-143397262
chr8	CG	SV	144127806	144128831	14	.	.	ID=3746;Type=deletion;Left=chr8:144127806-144128185+;Right=chr8:144128335-144128831+;Distance=529;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 15;Tandem period 46;RightRepeat=GA-rich:Low_complexity:Low_complexity;Self chain;Tandem period 15;Tandem period 31;Tandem period 46;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr8	CG	SV	144127806	144128185	14	+	.	ID=3746;Type=deletion;Left=chr8:144127806-144128185;Right=chr8:144128335-144128831
chr8	CG	SV	144128335	144128831	14	+	.	ID=3746;Type=deletion;Left=chr8:144127806-144128185;Right=chr8:144128335-144128831
chr8	CG	SV	144705210	144707972	66	.	.	ID=3744;Type=deletion;Left=chr8:144705210-144705750+;Right=chr8:144707385-144707972+;Distance=2175;DiscordantMatePairAlignments=66;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=NM_001166237:+;XRef=;Frequency=0.18
chr8	CG	SV	144705210	144705750	66	+	.	ID=3744;Type=deletion;Left=chr8:144705210-144705750;Right=chr8:144707385-144707972
chr8	CG	SV	144707385	144707972	66	+	.	ID=3744;Type=deletion;Left=chr8:144705210-144705750;Right=chr8:144707385-144707972
chr8	CG	SV	144819303	144820794	16	.	.	ID=3742;Type=deletion;Left=chr8:144819303-144819683+;Right=chr8:144820381-144820794+;Distance=1078;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;Tandem period 49;Tandem period 98;RightRepeat=Self chain;Tandem period 49;Tandem period 98;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr8	CG	SV	144819303	144819683	16	+	.	ID=3742;Type=deletion;Left=chr8:144819303-144819683;Right=chr8:144820381-144820794
chr8	CG	SV	144820381	144820794	16	+	.	ID=3742;Type=deletion;Left=chr8:144819303-144819683;Right=chr8:144820381-144820794
chr8	CG	SV	146027877	146029099	63	.	.	ID=3740;Type=deletion;Left=chr8:146027877-146028435+;Right=chr8:146028688-146029099+;Distance=811;DiscordantMatePairAlignments=63;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_003416:+;RightGenes=NM_003416:+;XRef=rs71976446 (chr8:146027825-146028636);Frequency=0.82
chr8	CG	SV	146027877	146028435	63	+	.	ID=3740;Type=deletion;Left=chr8:146027877-146028435;Right=chr8:146028688-146029099
chr8	CG	SV	146028688	146029099	63	+	.	ID=3740;Type=deletion;Left=chr8:146027877-146028435;Right=chr8:146028688-146029099
chr9	CG	SV	191453	67924348	12	.	.	ID=5491;Type=probable-inversion;Left=chr9:191453-191831+;Right=chr9:67923940-67924348-;Distance=67732895;DiscordantMatePairAlignments=12;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr9	CG	SV	191453	191831	12	+	.	ID=5491;Type=probable-inversion;Left=chr9:191453-191831;Right=chr9:67923940-67924348
chr9	CG	SV	67923940	67924348	12	+	.	ID=5491;Type=probable-inversion;Left=chr9:191453-191831;Right=chr9:67923940-67924348
chr9	CG	SV	697501	698580	11	.	.	ID=3739;Type=deletion;Left=chr9:697501-697767+;Right=chr9:698299-698580+;Distance=798;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 57;RightRepeat=;LeftGenes=NM_015158:+;NM_153186:+;RightGenes=NM_015158:+;NM_153186:+;XRef=;Frequency=0.29
chr9	CG	SV	697501	697767	11	+	.	ID=3739;Type=deletion;Left=chr9:697501-697767;Right=chr9:698299-698580
chr9	CG	SV	698299	698580	11	+	.	ID=3739;Type=deletion;Left=chr9:697501-697767;Right=chr9:698299-698580
chr9	CG	SV	4366421	4368154	30	.	.	ID=3736;Type=deletion;Left=chr9:4366421-4366990+;Right=chr9:4367648-4368154+;Distance=1227;DiscordantMatePairAlignments=30;LeftRepeat=;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr9	CG	SV	4366421	4366990	30	+	.	ID=3736;Type=deletion;Left=chr9:4366421-4366990;Right=chr9:4367648-4368154
chr9	CG	SV	4367648	4368154	30	+	.	ID=3736;Type=deletion;Left=chr9:4366421-4366990;Right=chr9:4367648-4368154
chr9	CG	SV	10394564	10395616	51	.	.	ID=3735;Type=deletion;Left=chr9:10394564-10395155+;Right=chr9:10395094-10395616+;Distance=530;DiscordantMatePairAlignments=51;LeftRepeat=;RightRepeat=;LeftGenes=NM_001040712:-;NM_002839:-;NM_130391:-;NM_130392:-;NM_130393:-;RightGenes=NM_001040712:-;NM_002839:-;NM_130391:-;NM_130392:-;NM_130393:-;XRef=rs71315285 (chr9:10394564-10395094);Frequency=1.00
chr9	CG	SV	10394564	10395155	51	+	.	ID=3735;Type=deletion;Left=chr9:10394564-10395155;Right=chr9:10395094-10395616
chr9	CG	SV	10395094	10395616	51	+	.	ID=3735;Type=deletion;Left=chr9:10394564-10395155;Right=chr9:10395094-10395616
chr9	CG	SV	15805309	15812519	10	.	.	ID=3734;Type=deletion;Left=chr9:15805309-15805841+;Right=chr9:15811943-15812519+;Distance=6634;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=L1PA4:LINE:L1;LeftGenes=NM_173550:+;RightGenes=NM_173550:+;XRef=;Frequency=0.65
chr9	CG	SV	15805309	15805841	10	+	.	ID=3734;Type=deletion;Left=chr9:15805309-15805841;Right=chr9:15811943-15812519
chr9	CG	SV	15811943	15812519	10	+	.	ID=3734;Type=deletion;Left=chr9:15805309-15805841;Right=chr9:15811943-15812519
chr9	CG	SV	18064328	18069057	85	.	.	ID=451;Type=probable-inversion;Left=chr9:18064328-18065011-;Right=chr9:18068296-18069057+;Distance=3285;DiscordantMatePairAlignments=85;LeftRepeat=CT-rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	18064328	18065011	85	-	.	ID=451;Type=probable-inversion;Left=chr9:18064328-18065011;Right=chr9:18068296-18069057
chr9	CG	SV	18068296	18069057	85	-	.	ID=451;Type=probable-inversion;Left=chr9:18064328-18065011;Right=chr9:18068296-18069057
chr9	CG	SV	23352801	23368320	126	.	.	ID=3729;Type=deletion;Left=chr9:23352801-23353313+;Right=chr9:23367685-23368320+;Distance=14884;DiscordantMatePairAlignments=126;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr9	CG	SV	23352801	23353313	126	+	.	ID=3729;Type=deletion;Left=chr9:23352801-23353313;Right=chr9:23367685-23368320
chr9	CG	SV	23367685	23368320	126	+	.	ID=3729;Type=deletion;Left=chr9:23352801-23353313;Right=chr9:23367685-23368320
chr9	CG	SV	24135482	24140817	47	.	.	ID=3727;Type=deletion;Left=chr9:24135482-24136015+;Right=chr9:24140391-24140817+;Distance=4909;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=L1MC:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	24135482	24136015	47	+	.	ID=3727;Type=deletion;Left=chr9:24135482-24136015;Right=chr9:24140391-24140817
chr9	CG	SV	24140391	24140817	47	+	.	ID=3727;Type=deletion;Left=chr9:24135482-24136015;Right=chr9:24140391-24140817
chr9	CG	SV	24492071	24509667	82	.	.	ID=3726;Type=deletion;Left=chr9:24492071-24492384+;Right=chr9:24509103-24509667+;Distance=17032;DiscordantMatePairAlignments=82;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	24492071	24492384	82	+	.	ID=3726;Type=deletion;Left=chr9:24492071-24492384;Right=chr9:24509103-24509667
chr9	CG	SV	24509103	24509667	82	+	.	ID=3726;Type=deletion;Left=chr9:24492071-24492384;Right=chr9:24509103-24509667
chr9	CG	SV	28432994	28571192	50	.	.	ID=3725;Type=deletion;Left=chr9:28432994-28433502+;Right=chr9:28570679-28571192+;Distance=137685;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=;LeftGenes=NM_152570:-;RightGenes=NM_152570:-;XRef=;Frequency=0.00
chr9	CG	SV	28432994	28433502	50	+	.	ID=3725;Type=deletion;Left=chr9:28432994-28433502;Right=chr9:28570679-28571192
chr9	CG	SV	28570679	28571192	50	+	.	ID=3725;Type=deletion;Left=chr9:28432994-28433502;Right=chr9:28570679-28571192
chr9	CG	SV	29082577	29088533	93	.	.	ID=3724;Type=deletion;Left=chr9:29082577-29083123+;Right=chr9:29088017-29088533+;Distance=5440;DiscordantMatePairAlignments=93;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr9	CG	SV	29082577	29083123	93	+	.	ID=3724;Type=deletion;Left=chr9:29082577-29083123;Right=chr9:29088017-29088533
chr9	CG	SV	29088017	29088533	93	+	.	ID=3724;Type=deletion;Left=chr9:29082577-29083123;Right=chr9:29088017-29088533
chr9	CG	SV	31281356	31283272	87	.	.	ID=3722;Type=deletion;Left=chr9:31281356-31281925+;Right=chr9:31282673-31283272+;Distance=1317;DiscordantMatePairAlignments=87;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1PA16:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71965107 (chr9:31281356-31282673);Frequency=0.71
chr9	CG	SV	31281356	31281925	87	+	.	ID=3722;Type=deletion;Left=chr9:31281356-31281925;Right=chr9:31282673-31283272
chr9	CG	SV	31282673	31283272	87	+	.	ID=3722;Type=deletion;Left=chr9:31281356-31281925;Right=chr9:31282673-31283272
chr9	CG	SV	33203183	33204459	65	.	.	ID=3721;Type=deletion;Left=chr9:33203183-33203833+;Right=chr9:33204042-33204459+;Distance=859;DiscordantMatePairAlignments=65;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs66854519 (chr9:33203052-33203911);Frequency=0.94
chr9	CG	SV	33203183	33203833	65	+	.	ID=3721;Type=deletion;Left=chr9:33203183-33203833;Right=chr9:33204042-33204459
chr9	CG	SV	33204042	33204459	65	+	.	ID=3721;Type=deletion;Left=chr9:33203183-33203833;Right=chr9:33204042-33204459
chr9	CG	SV	33413376	33415251	48	.	.	ID=3720;Type=deletion;Left=chr9:33413376-33413936+;Right=chr9:33414669-33415251+;Distance=1293;DiscordantMatePairAlignments=48;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=NR_003667:-;RightGenes=NR_003667:-;XRef=;Frequency=0.47
chr9	CG	SV	33413376	33413936	48	+	.	ID=3720;Type=deletion;Left=chr9:33413376-33413936;Right=chr9:33414669-33415251
chr9	CG	SV	33414669	33415251	48	+	.	ID=3720;Type=deletion;Left=chr9:33413376-33413936;Right=chr9:33414669-33415251
chr9	CG	SV	33563403	33564594	11	.	.	ID=3719;Type=deletion;Left=chr9:33563403-33564075+;Right=chr9:33564215-33564594+;Distance=812;DiscordantMatePairAlignments=11;LeftRepeat=SegDup;Self chain;RightRepeat=HSAT5:Satellite:Satellite;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr9	CG	SV	33563403	33564075	11	+	.	ID=3719;Type=deletion;Left=chr9:33563403-33564075;Right=chr9:33564215-33564594
chr9	CG	SV	33564215	33564594	11	+	.	ID=3719;Type=deletion;Left=chr9:33563403-33564075;Right=chr9:33564215-33564594
chr9	CG	SV	34670994	34671976	42	.	.	ID=1563;Type=tandem-duplication;Left=chr9:34670994-34671480-;Right=chr9:34671810-34671976-;Distance=496;DiscordantMatePairAlignments=42;LeftRepeat=MLT1A:LTR:MaLR;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	34670994	34671480	42	-	.	ID=1563;Type=tandem-duplication;Left=chr9:34670994-34671480;Right=chr9:34671810-34671976
chr9	CG	SV	34671810	34671976	42	-	.	ID=1563;Type=tandem-duplication;Left=chr9:34670994-34671480;Right=chr9:34671810-34671976
chr9	CG	SV	36352905	36354515	137	.	.	ID=3717;Type=deletion;Left=chr9:36352905-36353464+;Right=chr9:36354103-36354515+;Distance=1198;DiscordantMatePairAlignments=137;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=NM_022781:-;NM_194328:-;NM_194329:-;NM_194330:-;NM_194332:-;RightGenes=NM_022781:-;NM_194328:-;NM_194329:-;NM_194330:-;NM_194332:-;XRef=;Frequency=0.88
chr9	CG	SV	36352905	36353464	137	+	.	ID=3717;Type=deletion;Left=chr9:36352905-36353464;Right=chr9:36354103-36354515
chr9	CG	SV	36354103	36354515	137	+	.	ID=3717;Type=deletion;Left=chr9:36352905-36353464;Right=chr9:36354103-36354515
chr9	CG	SV	42405916	44010786	59	.	.	ID=450;Type=complex;Left=chr9:42405916-42405997-;Right=chr9:44010660-44010786+;Distance=1604663;DiscordantMatePairAlignments=59;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=SegDup;Self chain;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	42405916	42405997	59	-	.	ID=450;Type=complex;Left=chr9:42405916-42405997;Right=chr9:44010660-44010786
chr9	CG	SV	44010660	44010786	59	-	.	ID=450;Type=complex;Left=chr9:42405916-42405997;Right=chr9:44010660-44010786
chr9	CG	SV	42405934	42406070	35	.	.	ID=1562;Type=complex;Left=chr9:42405934-42406006-;Right=chr9:42405991-42406070-;Distance=64;DiscordantMatePairAlignments=35;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=SegDup;Self chain;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr9	CG	SV	42405934	42406006	35	-	.	ID=1562;Type=complex;Left=chr9:42405934-42406006;Right=chr9:42405991-42406070
chr9	CG	SV	42405991	42406070	35	-	.	ID=1562;Type=complex;Left=chr9:42405934-42406006;Right=chr9:42405991-42406070
chr9	CG	SV	44010533	44010783	176	.	.	ID=1561;Type=complex;Left=chr9:44010533-44010660-;Right=chr9:44010679-44010783-;Distance=123;DiscordantMatePairAlignments=176;LeftRepeat=SegDup;Self chain;Tandem period 64;RightRepeat=SegDup;Self chain;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	44010533	44010660	176	-	.	ID=1561;Type=complex;Left=chr9:44010533-44010660;Right=chr9:44010679-44010783
chr9	CG	SV	44010679	44010783	176	-	.	ID=1561;Type=complex;Left=chr9:44010533-44010660;Right=chr9:44010679-44010783
chr9	CG	SV	66209238	66218772	11	.	.	ID=449;Type=probable-inversion;Left=chr9:66209238-66209727-;Right=chr9:66218439-66218772+;Distance=8712;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=L1PA6:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr9	CG	SV	66209238	66209727	11	-	.	ID=449;Type=probable-inversion;Left=chr9:66209238-66209727;Right=chr9:66218439-66218772
chr9	CG	SV	66218439	66218772	11	-	.	ID=449;Type=probable-inversion;Left=chr9:66209238-66209727;Right=chr9:66218439-66218772
chr9	CG	SV	67912566	67914177	141	.	.	ID=3714;Type=deletion;Left=chr9:67912566-67913268+;Right=chr9:67913640-67914177+;Distance=1074;DiscordantMatePairAlignments=141;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	67912566	67913268	141	+	.	ID=3714;Type=deletion;Left=chr9:67912566-67913268;Right=chr9:67913640-67914177
chr9	CG	SV	67913640	67914177	141	+	.	ID=3714;Type=deletion;Left=chr9:67912566-67913268;Right=chr9:67913640-67914177
chr9	CG	SV	68286173	68287834	15	.	.	ID=3710;Type=deletion;Left=chr9:68286173-68286700+;Right=chr9:68287399-68287834+;Distance=1226;DiscordantMatePairAlignments=15;LeftRepeat=CER:Satellite:Satellite;SegDup;Self chain;Tandem period 144;Tandem period 48;Tandem period 96;RightRepeat=CER:Satellite:Satellite;SegDup;Self chain;Tandem period 144;Tandem period 48;Tandem period 96;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	68286173	68286700	15	+	.	ID=3710;Type=deletion;Left=chr9:68286173-68286700;Right=chr9:68287399-68287834
chr9	CG	SV	68287399	68287834	15	+	.	ID=3710;Type=deletion;Left=chr9:68286173-68286700;Right=chr9:68287399-68287834
chr9	CG	SV	70927942	70933822	50	.	.	ID=3709;Type=deletion;Left=chr9:70927942-70928650+;Right=chr9:70933176-70933822+;Distance=5234;DiscordantMatePairAlignments=50;LeftRepeat=;RightRepeat=L1MB8:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs67209752 (chr9:70927942-70933176);Frequency=0.88
chr9	CG	SV	70927942	70928650	50	+	.	ID=3709;Type=deletion;Left=chr9:70927942-70928650;Right=chr9:70933176-70933822
chr9	CG	SV	70933176	70933822	50	+	.	ID=3709;Type=deletion;Left=chr9:70927942-70928650;Right=chr9:70933176-70933822
chr9	CG	SV	70994347	70995360	87	.	.	ID=3708;Type=deletion;Left=chr9:70994347-70994967+;Right=chr9:70994821-70995360+;Distance=474;DiscordantMatePairAlignments=87;LeftRepeat=FAM:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_004817:+;NM_201629:+;RightGenes=NM_004817:+;NM_201629:+;XRef=rs72048497 (chr9:70994328-70994802);Frequency=0.65
chr9	CG	SV	70994347	70994967	87	+	.	ID=3708;Type=deletion;Left=chr9:70994347-70994967;Right=chr9:70994821-70995360
chr9	CG	SV	70994821	70995360	87	+	.	ID=3708;Type=deletion;Left=chr9:70994347-70994967;Right=chr9:70994821-70995360
chr9	CG	SV	78109380	78112218	16	.	.	ID=3703;Type=deletion;Left=chr9:78109380-78109705+;Right=chr9:78111907-78112218+;Distance=2527;DiscordantMatePairAlignments=16;LeftRepeat=MIRb:SINE:MIR;Tandem period 133;RightRepeat=MIRb:SINE:MIR;Tandem period 133;LeftGenes=;RightGenes=;XRef=rs71317213 (chr9:78109441-78111835);Frequency=0.88
chr9	CG	SV	78109380	78109705	16	+	.	ID=3703;Type=deletion;Left=chr9:78109380-78109705;Right=chr9:78111907-78112218
chr9	CG	SV	78111907	78112218	16	+	.	ID=3703;Type=deletion;Left=chr9:78109380-78109705;Right=chr9:78111907-78112218
chr9	CG	SV	78745579	78748543	95	.	.	ID=3702;Type=deletion;Left=chr9:78745579-78746333+;Right=chr9:78747921-78748543+;Distance=2342;DiscordantMatePairAlignments=95;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67936913 (chr9:78745579-78747921);Frequency=0.12
chr9	CG	SV	78745579	78746333	95	+	.	ID=3702;Type=deletion;Left=chr9:78745579-78746333;Right=chr9:78747921-78748543
chr9	CG	SV	78747921	78748543	95	+	.	ID=3702;Type=deletion;Left=chr9:78745579-78746333;Right=chr9:78747921-78748543
chr9	CG	SV	80972444	80973666	159	.	.	ID=441;Type=probable-inversion;Left=chr9:80972444-80972830-;Right=chr9:80973151-80973666+;Distance=321;DiscordantMatePairAlignments=159;LeftRepeat=MLT1K:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	80972444	80972830	159	-	.	ID=441;Type=probable-inversion;Left=chr9:80972444-80972830;Right=chr9:80973151-80973666
chr9	CG	SV	80973151	80973666	159	-	.	ID=441;Type=probable-inversion;Left=chr9:80972444-80972830;Right=chr9:80973151-80973666
chr9	CG	SV	81951198	81951826	271	-	.	ID=1426;Type=interchromosomal;Left=chr9:81951198-81951826-;Right=chr13:61645090-61645677-;Distance=;DiscordantMatePairAlignments=271;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	61645090	61645677	271	-	.	ID=1426;Type=interchromosomal;Left=chr9:81951198-81951826-;Right=chr13:61645090-61645677-;Distance=;DiscordantMatePairAlignments=271;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	83514181	83517409	109	.	.	ID=3698;Type=deletion;Left=chr9:83514181-83514884+;Right=chr9:83516759-83517409+;Distance=2578;DiscordantMatePairAlignments=109;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67720670 (chr9:83514168-83516746);Frequency=1.00
chr9	CG	SV	83514181	83514884	109	+	.	ID=3698;Type=deletion;Left=chr9:83514181-83514884;Right=chr9:83516759-83517409
chr9	CG	SV	83516759	83517409	109	+	.	ID=3698;Type=deletion;Left=chr9:83514181-83514884;Right=chr9:83516759-83517409
chr9	CG	SV	86965117	86966268	32	.	.	ID=3693;Type=deletion;Left=chr9:86965117-86965769+;Right=chr9:86966088-86966268+;Distance=971;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72108290 (chr9:86964897-86965868);Frequency=0.35
chr9	CG	SV	86965117	86965769	32	+	.	ID=3693;Type=deletion;Left=chr9:86965117-86965769;Right=chr9:86966088-86966268
chr9	CG	SV	86966088	86966268	32	+	.	ID=3693;Type=deletion;Left=chr9:86965117-86965769;Right=chr9:86966088-86966268
chr9	CG	SV	90048816	90051470	147	.	.	ID=3688;Type=deletion;Left=chr9:90048816-90049520+;Right=chr9:90050796-90051470+;Distance=1980;DiscordantMatePairAlignments=147;LeftRepeat=;RightRepeat=MER21C:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs71317224 (chr9:90048816-90050796);Frequency=1.00
chr9	CG	SV	90048816	90049520	147	+	.	ID=3688;Type=deletion;Left=chr9:90048816-90049520;Right=chr9:90050796-90051470
chr9	CG	SV	90050796	90051470	147	+	.	ID=3688;Type=deletion;Left=chr9:90048816-90049520;Right=chr9:90050796-90051470
chr9	CG	SV	90482157	90482972	25	.	.	ID=3686;Type=deletion;Left=chr9:90482157-90482856+;Right=chr9:90482536-90482972+;Distance=379;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;Tandem period 18;RightRepeat=Self chain;Tandem period 18;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr9	CG	SV	90482157	90482856	25	+	.	ID=3686;Type=deletion;Left=chr9:90482157-90482856;Right=chr9:90482536-90482972
chr9	CG	SV	90482536	90482972	25	+	.	ID=3686;Type=deletion;Left=chr9:90482157-90482856;Right=chr9:90482536-90482972
chr9	CG	SV	95510176	95511969	227	.	.	ID=3683;Type=deletion;Left=chr9:95510176-95510881+;Right=chr9:95511286-95511969+;Distance=1110;DiscordantMatePairAlignments=227;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67273187 (chr9:95510176-95511286);Frequency=0.29
chr9	CG	SV	95510176	95510881	227	+	.	ID=3683;Type=deletion;Left=chr9:95510176-95510881;Right=chr9:95511286-95511969
chr9	CG	SV	95511286	95511969	227	+	.	ID=3683;Type=deletion;Left=chr9:95510176-95510881;Right=chr9:95511286-95511969
chr9	CG	SV	98102408	98103307	10	.	.	ID=3682;Type=deletion;Left=chr9:98102408-98103257+;Right=chr9:98102746-98103307+;Distance=338;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000197:-;RightGenes=NM_000197:-;XRef=;Frequency=0.41
chr9	CG	SV	98102408	98103257	10	+	.	ID=3682;Type=deletion;Left=chr9:98102408-98103257;Right=chr9:98102746-98103307
chr9	CG	SV	98102746	98103307	10	+	.	ID=3682;Type=deletion;Left=chr9:98102408-98103257;Right=chr9:98102746-98103307
chr9	CG	SV	100348869	100352089	344	.	.	ID=3678;Type=deletion;Left=chr9:100348869-100349472+;Right=chr9:100351490-100352089+;Distance=2621;DiscordantMatePairAlignments=344;LeftRepeat=;RightRepeat=;LeftGenes=NM_005458:-;RightGenes=NM_005458:-;XRef=rs71885665 (chr9:100348864-100351485);Frequency=0.82
chr9	CG	SV	100348869	100349472	344	+	.	ID=3678;Type=deletion;Left=chr9:100348869-100349472;Right=chr9:100351490-100352089
chr9	CG	SV	100351490	100352089	344	+	.	ID=3678;Type=deletion;Left=chr9:100348869-100349472;Right=chr9:100351490-100352089
chr9	CG	SV	103221620	103222241	16	.	.	ID=1554;Type=tandem-duplication;Left=chr9:103221620-103221936-;Right=chr9:103221978-103222241-;Distance=305;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.30
chr9	CG	SV	103221620	103221936	16	-	.	ID=1554;Type=tandem-duplication;Left=chr9:103221620-103221936;Right=chr9:103221978-103222241
chr9	CG	SV	103221978	103222241	16	-	.	ID=1554;Type=tandem-duplication;Left=chr9:103221620-103221936;Right=chr9:103221978-103222241
chr9	CG	SV	103259526	103260820	285	.	.	ID=3677;Type=deletion;Left=chr9:103259526-103260180+;Right=chr9:103260209-103260820+;Distance=683;DiscordantMatePairAlignments=285;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr9	CG	SV	103259526	103260180	285	+	.	ID=3677;Type=deletion;Left=chr9:103259526-103260180;Right=chr9:103260209-103260820
chr9	CG	SV	103260209	103260820	285	+	.	ID=3677;Type=deletion;Left=chr9:103259526-103260180;Right=chr9:103260209-103260820
chr9	CG	SV	103483789	103485189	178	.	.	ID=3676;Type=deletion;Left=chr9:103483789-103484420+;Right=chr9:103484555-103485189+;Distance=766;DiscordantMatePairAlignments=178;LeftRepeat=;RightRepeat=;LeftGenes=NM_133445:-;RightGenes=NM_133445:-;XRef=rs66469119 (chr9:103483782-103484548);Frequency=1.00
chr9	CG	SV	103483789	103484420	178	+	.	ID=3676;Type=deletion;Left=chr9:103483789-103484420;Right=chr9:103484555-103485189
chr9	CG	SV	103484555	103485189	178	+	.	ID=3676;Type=deletion;Left=chr9:103483789-103484420;Right=chr9:103484555-103485189
chr9	CG	SV	106856800	106857162	42	.	.	ID=5484;Type=probable-inversion;Left=chr9:106856800-106857143+;Right=chr9:106856751-106857162-;Distance=362;DiscordantMatePairAlignments=42;LeftRepeat=Self chain;RightRepeat=LTR57-int:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr9	CG	SV	106856800	106857143	42	+	.	ID=5484;Type=probable-inversion;Left=chr9:106856800-106857143;Right=chr9:106856751-106857162
chr9	CG	SV	106856751	106857162	42	+	.	ID=5484;Type=probable-inversion;Left=chr9:106856800-106857143;Right=chr9:106856751-106857162
chr9	CG	SV	118516898	118517857	18	.	.	ID=3667;Type=deletion;Left=chr9:118516898-118517630+;Right=chr9:118517232-118517857+;Distance=334;DiscordantMatePairAlignments=18;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_014010:-;NM_198186:-;NM_198187:-;RightGenes=NM_014010:-;NM_198186:-;NM_198187:-;XRef=;Frequency=0.94
chr9	CG	SV	118516898	118517630	18	+	.	ID=3667;Type=deletion;Left=chr9:118516898-118517630;Right=chr9:118517232-118517857
chr9	CG	SV	118517232	118517857	18	+	.	ID=3667;Type=deletion;Left=chr9:118516898-118517630;Right=chr9:118517232-118517857
chr9	CG	SV	121571666	121572534	12	.	.	ID=3665;Type=deletion;Left=chr9:121571666-121572255+;Right=chr9:121571984-121572534+;Distance=318;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10529675 (chr9:121571655-121571973);Frequency=1.00
chr9	CG	SV	121571666	121572255	12	+	.	ID=3665;Type=deletion;Left=chr9:121571666-121572255;Right=chr9:121571984-121572534
chr9	CG	SV	121571984	121572534	12	+	.	ID=3665;Type=deletion;Left=chr9:121571666-121572255;Right=chr9:121571984-121572534
chr9	CG	SV	123266118	123267639	280	.	.	ID=1550;Type=tandem-duplication;Left=chr9:123266118-123266724-;Right=chr9:123266927-123267639-;Distance=915;DiscordantMatePairAlignments=280;LeftRepeat=(CAAAAA)n:Simple_repeat:Simple_repeat;Tandem AAAACA;Tandem CAAAA;RightRepeat=MLT1A:LTR:MaLR;LeftGenes=NR_003191:-;RightGenes=NR_003191:-;XRef=;Frequency=0.24
chr9	CG	SV	123266118	123266724	280	-	.	ID=1550;Type=tandem-duplication;Left=chr9:123266118-123266724;Right=chr9:123266927-123267639
chr9	CG	SV	123266927	123267639	280	-	.	ID=1550;Type=tandem-duplication;Left=chr9:123266118-123266724;Right=chr9:123266927-123267639
chr9	CG	SV	128256355	128458328	93	.	.	ID=3662;Type=deletion;Left=chr9:128256355-128256950+;Right=chr9:128457801-128458328+;Distance=201446;DiscordantMatePairAlignments=93;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_033446:+;RightGenes=NM_002316:+;XRef=;Frequency=0.00
chr9	CG	SV	128256355	128256950	93	+	.	ID=3662;Type=deletion;Left=chr9:128256355-128256950;Right=chr9:128457801-128458328
chr9	CG	SV	128457801	128458328	93	+	.	ID=3662;Type=deletion;Left=chr9:128256355-128256950;Right=chr9:128457801-128458328
chr9	CG	SV	130402343	130405890	136	.	.	ID=3659;Type=deletion;Left=chr9:130402343-130402893+;Right=chr9:130405306-130405890+;Distance=2963;DiscordantMatePairAlignments=136;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001130438:+;NM_003127:+;RightGenes=NM_001130438:+;NM_003127:+;XRef=;Frequency=0.00
chr9	CG	SV	130402343	130402893	136	+	.	ID=3659;Type=deletion;Left=chr9:130402343-130402893;Right=chr9:130405306-130405890
chr9	CG	SV	130405306	130405890	136	+	.	ID=3659;Type=deletion;Left=chr9:130402343-130402893;Right=chr9:130405306-130405890
chr9	CG	SV	131066521	131068451	33	.	.	ID=3658;Type=deletion;Left=chr9:131066521-131067025+;Right=chr9:131067905-131068451+;Distance=1384;DiscordantMatePairAlignments=33;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71317253 (chr9:131066521-131067905);Frequency=0.59
chr9	CG	SV	131066521	131067025	33	+	.	ID=3658;Type=deletion;Left=chr9:131066521-131067025;Right=chr9:131067905-131068451
chr9	CG	SV	131067905	131068451	33	+	.	ID=3658;Type=deletion;Left=chr9:131066521-131067025;Right=chr9:131067905-131068451
chr9	CG	SV	131198030	131198957	12	.	.	ID=1548;Type=tandem-duplication;Left=chr9:131198030-131198490-;Right=chr9:131198554-131198957-;Distance=467;DiscordantMatePairAlignments=12;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;Tandem GGAT;Tandem period 12;Tandem period 23;RightRepeat=Self chain;Tandem period 12;Tandem period 23;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	131198030	131198490	12	-	.	ID=1548;Type=tandem-duplication;Left=chr9:131198030-131198490;Right=chr9:131198554-131198957
chr9	CG	SV	131198554	131198957	12	-	.	ID=1548;Type=tandem-duplication;Left=chr9:131198030-131198490;Right=chr9:131198554-131198957
chr9	CG	SV	132070467	132075242	68	.	.	ID=3657;Type=deletion;Left=chr9:132070467-132071122+;Right=chr9:132074626-132075242+;Distance=4159;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr9	CG	SV	132070467	132071122	68	+	.	ID=3657;Type=deletion;Left=chr9:132070467-132071122;Right=chr9:132074626-132075242
chr9	CG	SV	132074626	132075242	68	+	.	ID=3657;Type=deletion;Left=chr9:132070467-132071122;Right=chr9:132074626-132075242
chr9	CG	SV	132372948	132377637	33	.	.	ID=3656;Type=deletion;Left=chr9:132372948-132373308+;Right=chr9:132377243-132377637+;Distance=4295;DiscordantMatePairAlignments=33;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L1PB2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr9	CG	SV	132372948	132373308	33	+	.	ID=3656;Type=deletion;Left=chr9:132372948-132373308;Right=chr9:132377243-132377637
chr9	CG	SV	132377243	132377637	33	+	.	ID=3656;Type=deletion;Left=chr9:132372948-132373308;Right=chr9:132377243-132377637
chr9	CG	SV	134748910	134750057	54	.	.	ID=3652;Type=distal-duplication;Left=chr9:134748910-134749634+;Right=chr9:134749954-134750057+;Distance=1044;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=;LeftGenes=NM_018956:+;RightGenes=NM_018956:+;XRef=;Frequency=0.35
chr9	CG	SV	134748910	134749634	54	+	.	ID=3652;Type=distal-duplication;Left=chr9:134748910-134749634;Right=chr9:134749954-134750057
chr9	CG	SV	134749954	134750057	54	+	.	ID=3652;Type=distal-duplication;Left=chr9:134748910-134749634;Right=chr9:134749954-134750057
chr9	CG	SV	134748172	134750089	47	.	.	ID=1547;Type=distal-duplication;Left=chr9:134748172-134748911-;Right=chr9:134749948-134750089-;Distance=1178;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_018956:+;RightGenes=NM_018956:+;XRef=;Frequency=0.35
chr9	CG	SV	134748172	134748911	47	-	.	ID=1547;Type=distal-duplication;Left=chr9:134748172-134748911;Right=chr9:134749948-134750089
chr9	CG	SV	134749948	134750089	47	-	.	ID=1547;Type=distal-duplication;Left=chr9:134748172-134748911;Right=chr9:134749948-134750089
chr9	CG	SV	135369043	135370084	20	.	.	ID=3649;Type=deletion;Left=chr9:135369043-135369725+;Right=chr9:135369385-135370084+;Distance=342;DiscordantMatePairAlignments=20;LeftRepeat=AluY:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs36107150 (chr9:135369043-135369385);Frequency=1.00
chr9	CG	SV	135369043	135369725	20	+	.	ID=3649;Type=deletion;Left=chr9:135369043-135369725;Right=chr9:135369385-135370084
chr9	CG	SV	135369385	135370084	20	+	.	ID=3649;Type=deletion;Left=chr9:135369043-135369725;Right=chr9:135369385-135370084
chr9	CG	SV	135403937	135405016	19	.	.	ID=3647;Type=deletion;Left=chr9:135403937-135404458+;Right=chr9:135404261-135405016+;Distance=324;DiscordantMatePairAlignments=19;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=ERVL-E:LTR:ERVL;LeftGenes=NM_001145320:+;NM_014694:+;RightGenes=NM_001145320:+;NM_014694:+;XRef=;Frequency=1.00
chr9	CG	SV	135403937	135404458	19	+	.	ID=3647;Type=deletion;Left=chr9:135403937-135404458;Right=chr9:135404261-135405016
chr9	CG	SV	135404261	135405016	19	+	.	ID=3647;Type=deletion;Left=chr9:135403937-135404458;Right=chr9:135404261-135405016
chr9	CG	SV	135443350	135443656	12	.	.	ID=1546;Type=tandem-duplication;Left=chr9:135443350-135443492-;Right=chr9:135443535-135443656-;Distance=164;DiscordantMatePairAlignments=12;LeftRepeat=Tandem period 17;RightRepeat=Tandem period 17;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr9	CG	SV	135443350	135443492	12	-	.	ID=1546;Type=tandem-duplication;Left=chr9:135443350-135443492;Right=chr9:135443535-135443656
chr9	CG	SV	135443535	135443656	12	-	.	ID=1546;Type=tandem-duplication;Left=chr9:135443350-135443492;Right=chr9:135443535-135443656
chr9	CG	SV	135615015	135616761	85	.	.	ID=3646;Type=deletion;Left=chr9:135615015-135615364+;Right=chr9:135616088-135616761+;Distance=1073;DiscordantMatePairAlignments=85;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr9	CG	SV	135615015	135615364	85	+	.	ID=3646;Type=deletion;Left=chr9:135615015-135615364;Right=chr9:135616088-135616761
chr9	CG	SV	135616088	135616761	85	+	.	ID=3646;Type=deletion;Left=chr9:135615015-135615364;Right=chr9:135616088-135616761
chr9	CG	SV	135682240	135683708	10	.	.	ID=3645;Type=deletion;Left=chr9:135682240-135682496+;Right=chr9:135683440-135683708+;Distance=1200;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 48;Tandem period 96;RightRepeat=Self chain;LeftGenes=NM_001134398:-;NM_003371:-;RightGenes=NM_001134398:-;NM_003371:-;XRef=;Frequency=0.53
chr9	CG	SV	135682240	135682496	10	+	.	ID=3645;Type=deletion;Left=chr9:135682240-135682496;Right=chr9:135683440-135683708
chr9	CG	SV	135683440	135683708	10	+	.	ID=3645;Type=deletion;Left=chr9:135682240-135682496;Right=chr9:135683440-135683708
chr9	CG	SV	137353887	137358327	437	.	.	ID=3640;Type=deletion;Left=chr9:137353887-137354508+;Right=chr9:137357427-137358327+;Distance=3540;DiscordantMatePairAlignments=437;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66913532 (chr9:137353884-137357424);Frequency=0.82
chr9	CG	SV	137353887	137354508	437	+	.	ID=3640;Type=deletion;Left=chr9:137353887-137354508;Right=chr9:137357427-137358327
chr9	CG	SV	137357427	137358327	437	+	.	ID=3640;Type=deletion;Left=chr9:137353887-137354508;Right=chr9:137357427-137358327
chr9	CG	SV	139373330	139376308	31	.	.	ID=3637;Type=deletion;Left=chr9:139373330-139373776+;Right=chr9:139375795-139376308+;Distance=2465;DiscordantMatePairAlignments=31;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_017820:-;RightGenes=NM_017820:-;XRef=;Frequency=0.71
chr9	CG	SV	139373330	139373776	31	+	.	ID=3637;Type=deletion;Left=chr9:139373330-139373776;Right=chr9:139375795-139376308
chr9	CG	SV	139375795	139376308	31	+	.	ID=3637;Type=deletion;Left=chr9:139373330-139373776;Right=chr9:139375795-139376308
chr9	CG	SV	139683418	139683851	11	.	.	ID=1544;Type=tandem-duplication;Left=chr9:139683418-139683588-;Right=chr9:139683645-139683851-;Distance=263;DiscordantMatePairAlignments=11;LeftRepeat=Self chain;Tandem period 37;RightRepeat=L2:LINE:L2;Self chain;Tandem period 37;LeftGenes=NM_001145527:+;NM_024757:+;RightGenes=NM_001145527:+;NM_024757:+;XRef=;Frequency=0.88
chr9	CG	SV	139683418	139683588	11	-	.	ID=1544;Type=tandem-duplication;Left=chr9:139683418-139683588;Right=chr9:139683645-139683851
chr9	CG	SV	139683645	139683851	11	-	.	ID=1544;Type=tandem-duplication;Left=chr9:139683418-139683588;Right=chr9:139683645-139683851
chr9	CG	SV	139892490	139897504	74	.	.	ID=3635;Type=complex;Left=chr9:139892490-139892713+;Right=chr9:139897015-139897504+;Distance=4525;DiscordantMatePairAlignments=74;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000718:+;RightGenes=NM_000718:+;XRef=;Frequency=1.00
chr9	CG	SV	139892490	139892713	74	+	.	ID=3635;Type=complex;Left=chr9:139892490-139892713;Right=chr9:139897015-139897504
chr9	CG	SV	139897015	139897504	74	+	.	ID=3635;Type=complex;Left=chr9:139892490-139892713;Right=chr9:139897015-139897504
chr9	CG	SV	139893433	139897725	33	.	.	ID=3634;Type=complex;Left=chr9:139893433-139893544+;Right=chr9:139897017-139897725+;Distance=3584;DiscordantMatePairAlignments=33;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000718:+;RightGenes=NM_000718:+;XRef=rs72411053 (chr9:139893431-139897015);Frequency=1.00
chr9	CG	SV	139893433	139893544	33	+	.	ID=3634;Type=complex;Left=chr9:139893433-139893544;Right=chr9:139897017-139897725
chr9	CG	SV	139897017	139897725	33	+	.	ID=3634;Type=complex;Left=chr9:139893433-139893544;Right=chr9:139897017-139897725
chr9	CG	SV	140032250	140034056	20	.	.	ID=3633;Type=deletion;Left=chr9:140032250-140032691+;Right=chr9:140033878-140034056+;Distance=1628;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;Tandem period 37;RightRepeat=Self chain;LeftGenes=NM_000718:+;RightGenes=NM_000718:+;XRef=;Frequency=0.06
chr9	CG	SV	140032250	140032691	20	+	.	ID=3633;Type=deletion;Left=chr9:140032250-140032691;Right=chr9:140033878-140034056
chr9	CG	SV	140033878	140034056	20	+	.	ID=3633;Type=deletion;Left=chr9:140032250-140032691;Right=chr9:140033878-140034056
chr9	CG	SV	140138980	140153873	12	.	.	ID=3632;Type=deletion;Left=chr9:140138980-140139099+;Right=chr9:140153504-140153873+;Distance=14524;DiscordantMatePairAlignments=12;LeftRepeat=(TTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TTG;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	140138980	140139099	12	+	.	ID=3632;Type=deletion;Left=chr9:140138980-140139099;Right=chr9:140153504-140153873
chr9	CG	SV	140153504	140153873	12	+	.	ID=3632;Type=deletion;Left=chr9:140138980-140139099;Right=chr9:140153504-140153873
chr10	CG	SV	1082520	1083884	26	.	.	ID=3630;Type=deletion;Left=chr10:1082520-1082894+;Right=chr10:1083597-1083884+;Distance=1077;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;Tandem period 30;RightRepeat=Self chain;Tandem period 30;Tandem period 37;Tandem period 67;Tigger3(Golem):DNA:MER2_type;LeftGenes=NM_004508:-;RightGenes=NM_004508:-;XRef=;Frequency=0.65
chr10	CG	SV	1082520	1082894	26	+	.	ID=3630;Type=deletion;Left=chr10:1082520-1082894;Right=chr10:1083597-1083884
chr10	CG	SV	1083597	1083884	26	+	.	ID=3630;Type=deletion;Left=chr10:1082520-1082894;Right=chr10:1083597-1083884
chr10	CG	SV	3443142	3443603	10	.	.	ID=1543;Type=tandem-duplication;Left=chr10:3443142-3443357-;Right=chr10:3443457-3443603-;Distance=246;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 15;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr10	CG	SV	3443142	3443357	10	-	.	ID=1543;Type=tandem-duplication;Left=chr10:3443142-3443357;Right=chr10:3443457-3443603
chr10	CG	SV	3443457	3443603	10	-	.	ID=1543;Type=tandem-duplication;Left=chr10:3443142-3443357;Right=chr10:3443457-3443603
chr10	CG	SV	4280063	4282320	230	.	.	ID=3627;Type=deletion;Left=chr10:4280063-4280697+;Right=chr10:4281683-4282320+;Distance=1620;DiscordantMatePairAlignments=230;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66666838 (chr10:4280063-4281683);Frequency=1.00
chr10	CG	SV	4280063	4280697	230	+	.	ID=3627;Type=deletion;Left=chr10:4280063-4280697;Right=chr10:4281683-4282320
chr10	CG	SV	4281683	4282320	230	+	.	ID=3627;Type=deletion;Left=chr10:4280063-4280697;Right=chr10:4281683-4282320
chr10	CG	SV	4698518	4701198	162	.	.	ID=3626;Type=deletion;Left=chr10:4698518-4699081+;Right=chr10:4700522-4701198+;Distance=2004;DiscordantMatePairAlignments=162;LeftRepeat=L1MB7:LINE:L1;RightRepeat=L1MB7:LINE:L1;LeftGenes=NR_024475:-;RightGenes=NR_024475:-;XRef=;Frequency=0.88
chr10	CG	SV	4698518	4699081	162	+	.	ID=3626;Type=deletion;Left=chr10:4698518-4699081;Right=chr10:4700522-4701198
chr10	CG	SV	4700522	4701198	162	+	.	ID=3626;Type=deletion;Left=chr10:4698518-4699081;Right=chr10:4700522-4701198
chr10	CG	SV	5192144	5314896	14	.	.	ID=3625;Type=distal-duplication;Left=chr10:5192144-5192760+;Right=chr10:5314801-5314896+;Distance=122657;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_027916:-;RightGenes=;XRef=;Frequency=0.94
chr10	CG	SV	5192144	5192760	14	+	.	ID=3625;Type=distal-duplication;Left=chr10:5192144-5192760;Right=chr10:5314801-5314896
chr10	CG	SV	5314801	5314896	14	+	.	ID=3625;Type=distal-duplication;Left=chr10:5192144-5192760;Right=chr10:5314801-5314896
chr10	CG	SV	5191659	5315036	16	.	.	ID=1542;Type=distal-duplication;Left=chr10:5191659-5192144-;Right=chr10:5314771-5315036-;Distance=122892;DiscordantMatePairAlignments=16;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_027916:-;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	5191659	5192144	16	-	.	ID=1542;Type=distal-duplication;Left=chr10:5191659-5192144;Right=chr10:5314771-5315036
chr10	CG	SV	5314771	5315036	16	-	.	ID=1542;Type=distal-duplication;Left=chr10:5191659-5192144;Right=chr10:5314771-5315036
chr10	CG	SV	5627102	5677712	256	.	.	ID=3624;Type=deletion;Left=chr10:5627102-5627795+;Right=chr10:5677119-5677712+;Distance=50017;DiscordantMatePairAlignments=256;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	5627102	5627795	256	+	.	ID=3624;Type=deletion;Left=chr10:5627102-5627795;Right=chr10:5677119-5677712
chr10	CG	SV	5677119	5677712	256	+	.	ID=3624;Type=deletion;Left=chr10:5627102-5627795;Right=chr10:5677119-5677712
chr10	CG	SV	6137381	6138067	10	.	.	ID=3623;Type=complex;Left=chr10:6137381-6138061+;Right=chr10:6137879-6138067+;Distance=498;DiscordantMatePairAlignments=10;LeftRepeat=MER5B:DNA:MER1_type;RightRepeat=;LeftGenes=NM_000417:-;RightGenes=NM_000417:-;XRef=;Frequency=1.00
chr10	CG	SV	6137381	6138061	10	+	.	ID=3623;Type=complex;Left=chr10:6137381-6138061;Right=chr10:6137879-6138067
chr10	CG	SV	6137879	6138067	10	+	.	ID=3623;Type=complex;Left=chr10:6137381-6138061;Right=chr10:6137879-6138067
chr10	CG	SV	6137392	6138558	127	.	.	ID=3622;Type=complex;Left=chr10:6137392-6137855+;Right=chr10:6137890-6138558+;Distance=498;DiscordantMatePairAlignments=127;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=NM_000417:-;RightGenes=NM_000417:-;XRef=rs71389922 (chr10:6137392-6137890);Frequency=1.00
chr10	CG	SV	6137392	6137855	127	+	.	ID=3622;Type=complex;Left=chr10:6137392-6137855;Right=chr10:6137890-6138558
chr10	CG	SV	6137890	6138558	127	+	.	ID=3622;Type=complex;Left=chr10:6137392-6137855;Right=chr10:6137890-6138558
chr10	CG	SV	6292009	6293370	20	.	.	ID=3621;Type=deletion;Left=chr10:6292009-6292762+;Right=chr10:6292966-6293370+;Distance=957;DiscordantMatePairAlignments=20;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluYb:SINE:Alu;LeftGenes=NM_001145443:+;NM_004566:+;RightGenes=NM_001145443:+;NM_004566:+;XRef=;Frequency=0.94
chr10	CG	SV	6292009	6292762	20	+	.	ID=3621;Type=deletion;Left=chr10:6292009-6292762;Right=chr10:6292966-6293370
chr10	CG	SV	6292966	6293370	20	+	.	ID=3621;Type=deletion;Left=chr10:6292009-6292762;Right=chr10:6292966-6293370
chr10	CG	SV	6451577	6458279	398	.	.	ID=3620;Type=deletion;Left=chr10:6451577-6452214+;Right=chr10:6457643-6458279+;Distance=6066;DiscordantMatePairAlignments=398;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71389924 (chr10:6451586-6457652);Frequency=0.94
chr10	CG	SV	6451577	6452214	398	+	.	ID=3620;Type=deletion;Left=chr10:6451577-6452214;Right=chr10:6457643-6458279
chr10	CG	SV	6457643	6458279	398	+	.	ID=3620;Type=deletion;Left=chr10:6451577-6452214;Right=chr10:6457643-6458279
chr10	CG	SV	6687898	6689287	155	.	.	ID=3619;Type=deletion;Left=chr10:6687898-6688594+;Right=chr10:6688857-6689287+;Distance=959;DiscordantMatePairAlignments=155;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	6687898	6688594	155	+	.	ID=3619;Type=deletion;Left=chr10:6687898-6688594;Right=chr10:6688857-6689287
chr10	CG	SV	6688857	6689287	155	+	.	ID=3619;Type=deletion;Left=chr10:6687898-6688594;Right=chr10:6688857-6689287
chr10	CG	SV	7117046	7118906	370	.	.	ID=3618;Type=deletion;Left=chr10:7117046-7117721+;Right=chr10:7118307-7118906+;Distance=1261;DiscordantMatePairAlignments=370;LeftRepeat=;RightRepeat=L1ME3A:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr10	CG	SV	7117046	7117721	370	+	.	ID=3618;Type=deletion;Left=chr10:7117046-7117721;Right=chr10:7118307-7118906
chr10	CG	SV	7118307	7118906	370	+	.	ID=3618;Type=deletion;Left=chr10:7117046-7117721;Right=chr10:7118307-7118906
chr10	CG	SV	12907177	12907250	26	.	.	ID=5479;Type=probable-inversion;Left=chr10:12907177-12907848+;Right=chr10:12907176-12907250-;Distance=73;DiscordantMatePairAlignments=26;LeftRepeat=MADE1:DNA:Mariner;Self chain;RightRepeat=Self chain;LeftGenes=NM_020397:+;NM_153498:+;RightGenes=NM_020397:+;NM_153498:+;XRef=;Frequency=1.00
chr10	CG	SV	12907177	12907848	26	+	.	ID=5479;Type=probable-inversion;Left=chr10:12907177-12907848;Right=chr10:12907176-12907250
chr10	CG	SV	12907176	12907250	26	+	.	ID=5479;Type=probable-inversion;Left=chr10:12907177-12907848;Right=chr10:12907176-12907250
chr10	CG	SV	18543082	18544295	153	.	.	ID=3614;Type=deletion;Left=chr10:18543082-18543697+;Right=chr10:18543596-18544295+;Distance=514;DiscordantMatePairAlignments=153;LeftRepeat=;RightRepeat=;LeftGenes=NM_001167945:+;NM_201571:+;NM_201572:+;NM_201593:+;NM_201596:+;NM_201597:+;RightGenes=NM_001167945:+;NM_201571:+;NM_201572:+;NM_201593:+;NM_201596:+;NM_201597:+;XRef=rs71727498 (chr10:18543082-18543596);Frequency=0.88
chr10	CG	SV	18543082	18543697	153	+	.	ID=3614;Type=deletion;Left=chr10:18543082-18543697;Right=chr10:18543596-18544295
chr10	CG	SV	18543596	18544295	153	+	.	ID=3614;Type=deletion;Left=chr10:18543082-18543697;Right=chr10:18543596-18544295
chr10	CG	SV	20036930	20038774	46	.	.	ID=3613;Type=deletion;Left=chr10:20036930-20037569+;Right=chr10:20038390-20038774+;Distance=1460;DiscordantMatePairAlignments=46;LeftRepeat=AT_rich:Low_complexity:Low_complexity;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72302744 (chr10:20036557-20038014);Frequency=0.71
chr10	CG	SV	20036930	20037569	46	+	.	ID=3613;Type=deletion;Left=chr10:20036930-20037569;Right=chr10:20038390-20038774
chr10	CG	SV	20038390	20038774	46	+	.	ID=3613;Type=deletion;Left=chr10:20036930-20037569;Right=chr10:20038390-20038774
chr10	CG	SV	27039050	27042590	85	.	.	ID=3609;Type=deletion;Left=chr10:27039050-27039738+;Right=chr10:27042188-27042590+;Distance=3138;DiscordantMatePairAlignments=85;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_014317:+;RightGenes=NM_014317:+;XRef=rs67040591 (chr10:27038982-27042120);Frequency=0.88
chr10	CG	SV	27039050	27039738	85	+	.	ID=3609;Type=deletion;Left=chr10:27039050-27039738;Right=chr10:27042188-27042590
chr10	CG	SV	27042188	27042590	85	+	.	ID=3609;Type=deletion;Left=chr10:27039050-27039738;Right=chr10:27042188-27042590
chr10	CG	SV	27264209	27268659	28	.	.	ID=3608;Type=distal-duplication;Left=chr10:27264209-27264707+;Right=chr10:27268094-27268659+;Distance=3885;DiscordantMatePairAlignments=28;LeftRepeat=AluSc:SINE:Alu;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NR_026795:-;RightGenes=NR_026795:-;XRef=rs72174406 (chr10:27264209-27268094);Frequency=0.76
chr10	CG	SV	27264209	27264707	28	+	.	ID=3608;Type=distal-duplication;Left=chr10:27264209-27264707;Right=chr10:27268094-27268659
chr10	CG	SV	27268094	27268659	28	+	.	ID=3608;Type=distal-duplication;Left=chr10:27264209-27264707;Right=chr10:27268094-27268659
chr10	CG	SV	27263938	27269313	70	.	.	ID=1540;Type=distal-duplication;Left=chr10:27263938-27264633-;Right=chr10:27268747-27269313-;Distance=4680;DiscordantMatePairAlignments=70;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NR_026795:-;RightGenes=NR_026795:-;XRef=;Frequency=0.76
chr10	CG	SV	27263938	27264633	70	-	.	ID=1540;Type=distal-duplication;Left=chr10:27263938-27264633;Right=chr10:27268747-27269313
chr10	CG	SV	27268747	27269313	70	-	.	ID=1540;Type=distal-duplication;Left=chr10:27263938-27264633;Right=chr10:27268747-27269313
chr10	CG	SV	32297901	32301333	160	.	.	ID=3607;Type=deletion;Left=chr10:32297901-32298478+;Right=chr10:32300633-32301333+;Distance=2732;DiscordantMatePairAlignments=160;LeftRepeat=(TCTCCC)n:Simple_repeat:Simple_repeat;Tandem CCCTCT;Tandem period 19;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72294841 (chr10:32297901-32300633);Frequency=0.88
chr10	CG	SV	32297901	32298478	160	+	.	ID=3607;Type=deletion;Left=chr10:32297901-32298478;Right=chr10:32300633-32301333
chr10	CG	SV	32300633	32301333	160	+	.	ID=3607;Type=deletion;Left=chr10:32297901-32298478;Right=chr10:32300633-32301333
chr10	CG	SV	46442454	46480020	121	.	.	ID=415;Type=probable-inversion;Left=chr10:46442454-46443108-;Right=chr10:46479573-46480020+;Distance=36465;DiscordantMatePairAlignments=121;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TG;Tandem period 9;RightRepeat=(CA)n:Simple_repeat:Simple_repeat;Self chain;Tandem CA;Tandem period 19;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	46442454	46443108	121	-	.	ID=415;Type=probable-inversion;Left=chr10:46442454-46443108;Right=chr10:46479573-46480020
chr10	CG	SV	46479573	46480020	121	-	.	ID=415;Type=probable-inversion;Left=chr10:46442454-46443108;Right=chr10:46479573-46480020
chr10	CG	SV	46508391	46509321	39	.	.	ID=3580;Type=deletion;Left=chr10:46508391-46509213+;Right=chr10:46508719-46509321+;Distance=328;DiscordantMatePairAlignments=39;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs10705841 (chr10:46508391-46508719);Frequency=0.00
chr10	CG	SV	46508391	46509213	39	+	.	ID=3580;Type=deletion;Left=chr10:46508391-46509213;Right=chr10:46508719-46509321
chr10	CG	SV	46508719	46509321	39	+	.	ID=3580;Type=deletion;Left=chr10:46508391-46509213;Right=chr10:46508719-46509321
chr10	CG	SV	47112724	47113770	27	.	.	ID=3578;Type=deletion;Left=chr10:47112724-47113304+;Right=chr10:47113165-47113770+;Distance=441;DiscordantMatePairAlignments=27;LeftRepeat=(CCCTAA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem CTAACT;RightRepeat=(CCCTAA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem CTAACT;LeftGenes=;RightGenes=;XRef=rs71702761 (chr10:47112617-47113103);Frequency=1.00
chr10	CG	SV	47112724	47113304	27	+	.	ID=3578;Type=deletion;Left=chr10:47112724-47113304;Right=chr10:47113165-47113770
chr10	CG	SV	47113165	47113770	27	+	.	ID=3578;Type=deletion;Left=chr10:47112724-47113304;Right=chr10:47113165-47113770
chr10	CG	SV	47124524	51159023	13	.	.	ID=5464;Type=probable-inversion;Left=chr10:47124524-47125164+;Right=chr10:51158569-51159023-;Distance=4034499;DiscordantMatePairAlignments=13;LeftRepeat=MIRb:SINE:MIR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr10	CG	SV	47124524	47125164	13	+	.	ID=5464;Type=probable-inversion;Left=chr10:47124524-47125164;Right=chr10:51158569-51159023
chr10	CG	SV	51158569	51159023	13	+	.	ID=5464;Type=probable-inversion;Left=chr10:47124524-47125164;Right=chr10:51158569-51159023
chr10	CG	SV	52595633	52992546	27	.	.	ID=3575;Type=deletion;Left=chr10:52595633-52595786+;Right=chr10:52992070-52992546+;Distance=396437;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001098512:+;NM_006258:+;RightGenes=NM_001098512:+;NM_006258:+;XRef=;Frequency=0.00
chr10	CG	SV	52595633	52595786	27	+	.	ID=3575;Type=deletion;Left=chr10:52595633-52595786;Right=chr10:52992070-52992546
chr10	CG	SV	52992070	52992546	27	+	.	ID=3575;Type=deletion;Left=chr10:52595633-52595786;Right=chr10:52992070-52992546
chr10	CG	SV	54111009	54111849	13	.	.	ID=3574;Type=deletion;Left=chr10:54111009-54111778+;Right=chr10:54111519-54111849+;Distance=510;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	54111009	54111778	13	+	.	ID=3574;Type=deletion;Left=chr10:54111009-54111778;Right=chr10:54111519-54111849
chr10	CG	SV	54111519	54111849	13	+	.	ID=3574;Type=deletion;Left=chr10:54111009-54111778;Right=chr10:54111519-54111849
chr10	CG	SV	54453548	54459563	48	.	.	ID=3573;Type=deletion;Left=chr10:54453548-54454164+;Right=chr10:54458835-54459563+;Distance=5287;DiscordantMatePairAlignments=48;LeftRepeat=LTR8:LTR:ERV1;Self chain;RightRepeat=HERV30:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr10	CG	SV	54453548	54454164	48	+	.	ID=3573;Type=deletion;Left=chr10:54453548-54454164;Right=chr10:54458835-54459563
chr10	CG	SV	54458835	54459563	48	+	.	ID=3573;Type=deletion;Left=chr10:54453548-54454164;Right=chr10:54458835-54459563
chr10	CG	SV	56356483	56381678	37	.	.	ID=3572;Type=deletion;Left=chr10:56356483-56356965+;Right=chr10:56381113-56381678+;Distance=24630;DiscordantMatePairAlignments=37;LeftRepeat=L1PA13:LINE:L1;Self chain;RightRepeat=L1MC2:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	56356483	56356965	37	+	.	ID=3572;Type=deletion;Left=chr10:56356483-56356965;Right=chr10:56381113-56381678
chr10	CG	SV	56381113	56381678	37	+	.	ID=3572;Type=deletion;Left=chr10:56356483-56356965;Right=chr10:56381113-56381678
chr10	CG	SV	56423945	56604143	40	.	.	ID=3571;Type=deletion;Left=chr10:56423945-56424452+;Right=chr10:56603586-56604143+;Distance=179641;DiscordantMatePairAlignments=40;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	56423945	56424452	40	+	.	ID=3571;Type=deletion;Left=chr10:56423945-56424452;Right=chr10:56603586-56604143
chr10	CG	SV	56603586	56604143	40	+	.	ID=3571;Type=deletion;Left=chr10:56423945-56424452;Right=chr10:56603586-56604143
chr10	CG	SV	58927376	58928556	37	.	.	ID=414;Type=probable-inversion;Left=chr10:58927376-58927664-;Right=chr10:58927992-58928556+;Distance=328;DiscordantMatePairAlignments=37;LeftRepeat=Self chain;RightRepeat=MIRb:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr10	CG	SV	58927376	58927664	37	-	.	ID=414;Type=probable-inversion;Left=chr10:58927376-58927664;Right=chr10:58927992-58928556
chr10	CG	SV	58927992	58928556	37	-	.	ID=414;Type=probable-inversion;Left=chr10:58927376-58927664;Right=chr10:58927992-58928556
chr10	CG	SV	67098537	67099295	22	.	.	ID=413;Type=probable-inversion;Left=chr10:67098537-67098629-;Right=chr10:67098743-67099295+;Distance=114;DiscordantMatePairAlignments=22;LeftRepeat=MER87:LTR:ERV1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	67098537	67098629	22	-	.	ID=413;Type=probable-inversion;Left=chr10:67098537-67098629;Right=chr10:67098743-67099295
chr10	CG	SV	67098743	67099295	22	-	.	ID=413;Type=probable-inversion;Left=chr10:67098537-67098629;Right=chr10:67098743-67099295
chr10	CG	SV	77925584	77931845	53	.	.	ID=3568;Type=deletion;Left=chr10:77925584-77926026+;Right=chr10:77931031-77931845+;Distance=5447;DiscordantMatePairAlignments=53;LeftRepeat=L1MD:LINE:L1;Self chain;RightRepeat=L1PA16:LINE:L1;Self chain;LeftGenes=NM_032024:+;RightGenes=NM_032024:+;XRef=;Frequency=1.00
chr10	CG	SV	77925584	77926026	53	+	.	ID=3568;Type=deletion;Left=chr10:77925584-77926026;Right=chr10:77931031-77931845
chr10	CG	SV	77931031	77931845	53	+	.	ID=3568;Type=deletion;Left=chr10:77925584-77926026;Right=chr10:77931031-77931845
chr10	CG	SV	78470917	78471818	11	.	.	ID=3566;Type=deletion;Left=chr10:78470917-78471548+;Right=chr10:78471236-78471818+;Distance=319;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem T;Tandem period 183;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_001014797:-;NM_001161352:-;NM_001161353:-;NM_002247:-;RightGenes=NM_001014797:-;NM_001161352:-;NM_001161353:-;NM_002247:-;XRef=rs67173538 (chr10:78470908-78471227);Frequency=1.00
chr10	CG	SV	78470917	78471548	11	+	.	ID=3566;Type=deletion;Left=chr10:78470917-78471548;Right=chr10:78471236-78471818
chr10	CG	SV	78471236	78471818	11	+	.	ID=3566;Type=deletion;Left=chr10:78470917-78471548;Right=chr10:78471236-78471818
chr10	CG	SV	80762188	80763390	115	.	.	ID=3565;Type=deletion;Left=chr10:80762188-80762858+;Right=chr10:80762786-80763390+;Distance=598;DiscordantMatePairAlignments=115;LeftRepeat=Self chain;RightRepeat=L1ME3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr10	CG	SV	80762188	80762858	115	+	.	ID=3565;Type=deletion;Left=chr10:80762188-80762858;Right=chr10:80762786-80763390
chr10	CG	SV	80762786	80763390	115	+	.	ID=3565;Type=deletion;Left=chr10:80762188-80762858;Right=chr10:80762786-80763390
chr10	CG	SV	84227969	84229048	136	.	.	ID=3562;Type=deletion;Left=chr10:84227969-84228583+;Right=chr10:84228462-84229048+;Distance=493;DiscordantMatePairAlignments=136;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;RightGenes=NM_001010848:+;NM_001165972:+;NM_001165973:+;XRef=rs66512026 (chr10:84227952-84228445);Frequency=0.82
chr10	CG	SV	84227969	84228583	136	+	.	ID=3562;Type=deletion;Left=chr10:84227969-84228583;Right=chr10:84228462-84229048
chr10	CG	SV	84228462	84229048	136	+	.	ID=3562;Type=deletion;Left=chr10:84227969-84228583;Right=chr10:84228462-84229048
chr10	CG	SV	89265777	89266973	103	.	.	ID=3560;Type=deletion;Left=chr10:89265777-89266335+;Right=chr10:89266548-89266973+;Distance=771;DiscordantMatePairAlignments=103;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_004897:+;RightGenes=NM_004897:+;XRef=;Frequency=0.71
chr10	CG	SV	89265777	89266335	103	+	.	ID=3560;Type=deletion;Left=chr10:89265777-89266335;Right=chr10:89266548-89266973
chr10	CG	SV	89266548	89266973	103	+	.	ID=3560;Type=deletion;Left=chr10:89265777-89266335;Right=chr10:89266548-89266973
chr10	CG	SV	94124579	94128102	76	.	.	ID=3557;Type=deletion;Left=chr10:94124579-94125133+;Right=chr10:94127633-94128102+;Distance=3054;DiscordantMatePairAlignments=76;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=rs66665405 (chr10:94124594-94127633);Frequency=1.00
chr10	CG	SV	94124579	94125133	76	+	.	ID=3557;Type=deletion;Left=chr10:94124579-94125133;Right=chr10:94127633-94128102
chr10	CG	SV	94127633	94128102	76	+	.	ID=3557;Type=deletion;Left=chr10:94124579-94125133;Right=chr10:94127633-94128102
chr10	CG	SV	95535467	95537285	161	.	.	ID=3556;Type=deletion;Left=chr10:95535467-95535899+;Right=chr10:95536485-95537285+;Distance=1018;DiscordantMatePairAlignments=161;LeftRepeat=L4:LINE:RTE;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=NM_005097:+;RightGenes=NM_005097:+;XRef=;Frequency=1.00
chr10	CG	SV	95535467	95535899	161	+	.	ID=3556;Type=deletion;Left=chr10:95535467-95535899;Right=chr10:95536485-95537285
chr10	CG	SV	95536485	95537285	161	+	.	ID=3556;Type=deletion;Left=chr10:95535467-95535899;Right=chr10:95536485-95537285
chr10	CG	SV	97196504	97198010	30	.	.	ID=1497;Type=distal-duplication;Left=chr10:97196504-97196775-;Right=chr10:97197408-97198010-;Distance=1235;DiscordantMatePairAlignments=30;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_015385:-;NM_024991:-;RightGenes=NM_015385:-;NM_024991:-;XRef=;Frequency=0.76
chr10	CG	SV	97196504	97196775	30	-	.	ID=1497;Type=distal-duplication;Left=chr10:97196504-97196775;Right=chr10:97197408-97198010
chr10	CG	SV	97197408	97198010	30	-	.	ID=1497;Type=distal-duplication;Left=chr10:97196504-97196775;Right=chr10:97197408-97198010
chr10	CG	SV	97197045	97198632	59	.	.	ID=3555;Type=distal-duplication;Left=chr10:97197045-97197318+;Right=chr10:97198018-97198632+;Distance=973;DiscordantMatePairAlignments=59;LeftRepeat=AluJb:SINE:Alu;RightRepeat=;LeftGenes=NM_015385:-;NM_024991:-;RightGenes=NM_015385:-;NM_024991:-;XRef=rs71977870 (chr10:97197044-97198017);Frequency=0.76
chr10	CG	SV	97197045	97197318	59	+	.	ID=3555;Type=distal-duplication;Left=chr10:97197045-97197318;Right=chr10:97198018-97198632
chr10	CG	SV	97198018	97198632	59	+	.	ID=3555;Type=distal-duplication;Left=chr10:97197045-97197318;Right=chr10:97198018-97198632
chr10	CG	SV	99024863	99028004	333	.	.	ID=3554;Type=deletion;Left=chr10:99024863-99025475+;Right=chr10:99027397-99028004+;Distance=2534;DiscordantMatePairAlignments=333;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=NM_032900:-;RightGenes=NM_032900:-;XRef=rs67953540 (chr10:99024853-99027387);Frequency=1.00
chr10	CG	SV	99024863	99025475	333	+	.	ID=3554;Type=deletion;Left=chr10:99024863-99025475;Right=chr10:99027397-99028004
chr10	CG	SV	99027397	99028004	333	+	.	ID=3554;Type=deletion;Left=chr10:99024863-99025475;Right=chr10:99027397-99028004
chr10	CG	SV	107242992	107243920	11	.	.	ID=3547;Type=deletion;Left=chr10:107242992-107243671+;Right=chr10:107243345-107243920+;Distance=353;DiscordantMatePairAlignments=11;LeftRepeat=MIRb:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs6144069 (chr10:107242988-107243341);Frequency=0.76
chr10	CG	SV	107242992	107243671	11	+	.	ID=3547;Type=deletion;Left=chr10:107242992-107243671;Right=chr10:107243345-107243920
chr10	CG	SV	107243345	107243920	11	+	.	ID=3547;Type=deletion;Left=chr10:107242992-107243671;Right=chr10:107243345-107243920
chr10	CG	SV	107940674	107942263	293	.	.	ID=3546;Type=deletion;Left=chr10:107940674-107941356+;Right=chr10:107941587-107942263+;Distance=913;DiscordantMatePairAlignments=293;LeftRepeat=MER5A1:DNA:MER1_type;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67619770 (chr10:107940674-107941587);Frequency=0.94
chr10	CG	SV	107940674	107941356	293	+	.	ID=3546;Type=deletion;Left=chr10:107940674-107941356;Right=chr10:107941587-107942263
chr10	CG	SV	107941587	107942263	293	+	.	ID=3546;Type=deletion;Left=chr10:107940674-107941356;Right=chr10:107941587-107942263
chr10	CG	SV	108020311	108023063	83	.	.	ID=3545;Type=deletion;Left=chr10:108020311-108020826+;Right=chr10:108022535-108023063+;Distance=2224;DiscordantMatePairAlignments=83;LeftRepeat=MER52-int:LTR:ERV1;RightRepeat=MER52-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr10	CG	SV	108020311	108020826	83	+	.	ID=3545;Type=deletion;Left=chr10:108020311-108020826;Right=chr10:108022535-108023063
chr10	CG	SV	108022535	108023063	83	+	.	ID=3545;Type=deletion;Left=chr10:108020311-108020826;Right=chr10:108022535-108023063
chr10	CG	SV	111562107	111568904	110	.	.	ID=3544;Type=deletion;Left=chr10:111562107-111562750+;Right=chr10:111568213-111568904+;Distance=6106;DiscordantMatePairAlignments=110;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66614434 (chr10:111562100-111568206);Frequency=1.00
chr10	CG	SV	111562107	111562750	110	+	.	ID=3544;Type=deletion;Left=chr10:111562107-111562750;Right=chr10:111568213-111568904
chr10	CG	SV	111568213	111568904	110	+	.	ID=3544;Type=deletion;Left=chr10:111562107-111562750;Right=chr10:111568213-111568904
chr10	CG	SV	114102173	114107258	271	.	.	ID=3543;Type=deletion;Left=chr10:114102173-114102846+;Right=chr10:114106650-114107258+;Distance=4477;DiscordantMatePairAlignments=271;LeftRepeat=AluSx:SINE:Alu;RightRepeat=MIRm:SINE:MIR;LeftGenes=NR_028134:-;RightGenes=;XRef=rs71683790 (chr10:114102173-114106650);Frequency=0.88
chr10	CG	SV	114102173	114102846	271	+	.	ID=3543;Type=deletion;Left=chr10:114102173-114102846;Right=chr10:114106650-114107258
chr10	CG	SV	114106650	114107258	271	+	.	ID=3543;Type=deletion;Left=chr10:114102173-114102846;Right=chr10:114106650-114107258
chr10	CG	SV	114148108	114148761	14	.	.	ID=3542;Type=deletion;Left=chr10:114148108-114148817+;Right=chr10:114148448-114148761+;Distance=340;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_016234:+;NM_203379:+;NM_203380:+;RightGenes=NM_016234:+;NM_203379:+;NM_203380:+;XRef=;Frequency=1.00
chr10	CG	SV	114148108	114148817	14	+	.	ID=3542;Type=deletion;Left=chr10:114148108-114148817;Right=chr10:114148448-114148761
chr10	CG	SV	114148448	114148761	14	+	.	ID=3542;Type=deletion;Left=chr10:114148108-114148817;Right=chr10:114148448-114148761
chr10	CG	SV	122216763	122219523	112	.	.	ID=3537;Type=deletion;Left=chr10:122216763-122217242+;Right=chr10:122218911-122219523+;Distance=2148;DiscordantMatePairAlignments=112;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_001030059:+;RightGenes=NM_001030059:+;XRef=rs66889305 (chr10:122216588-122218737);Frequency=1.00
chr10	CG	SV	122216763	122217242	112	+	.	ID=3537;Type=deletion;Left=chr10:122216763-122217242;Right=chr10:122218911-122219523
chr10	CG	SV	122218911	122219523	112	+	.	ID=3537;Type=deletion;Left=chr10:122216763-122217242;Right=chr10:122218911-122219523
chr10	CG	SV	125909365	125909683	11	.	.	ID=1494;Type=tandem-duplication;Left=chr10:125909365-125909503-;Right=chr10:125909546-125909683-;Distance=180;DiscordantMatePairAlignments=11;LeftRepeat=Tandem period 12;RightRepeat=Tandem period 12;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr10	CG	SV	125909365	125909503	11	-	.	ID=1494;Type=tandem-duplication;Left=chr10:125909365-125909503;Right=chr10:125909546-125909683
chr10	CG	SV	125909546	125909683	11	-	.	ID=1494;Type=tandem-duplication;Left=chr10:125909365-125909503;Right=chr10:125909546-125909683
chr10	CG	SV	127180147	127181327	64	.	.	ID=412;Type=complex;Left=chr10:127180147-127180407-;Right=chr10:127180684-127181327+;Distance=277;DiscordantMatePairAlignments=64;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr10	CG	SV	127180147	127180407	64	-	.	ID=412;Type=complex;Left=chr10:127180147-127180407;Right=chr10:127180684-127181327
chr10	CG	SV	127180684	127181327	64	-	.	ID=412;Type=complex;Left=chr10:127180147-127180407;Right=chr10:127180684-127181327
chr10	CG	SV	127180959	127187217	59	.	.	ID=5461;Type=complex;Left=chr10:127180959-127181512+;Right=chr10:127186592-127187217-;Distance=6258;DiscordantMatePairAlignments=59;LeftRepeat=Alu:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr10	CG	SV	127180959	127181512	59	+	.	ID=5461;Type=complex;Left=chr10:127180959-127181512;Right=chr10:127186592-127187217
chr10	CG	SV	127186592	127187217	59	+	.	ID=5461;Type=complex;Left=chr10:127180959-127181512;Right=chr10:127186592-127187217
chr10	CG	SV	127181647	127187723	95	.	.	ID=3528;Type=complex;Left=chr10:127181647-127182254+;Right=chr10:127187226-127187723+;Distance=5579;DiscordantMatePairAlignments=95;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66681237 (chr10:127181645-127187224);Frequency=0.82
chr10	CG	SV	127181647	127182254	95	+	.	ID=3528;Type=complex;Left=chr10:127181647-127182254;Right=chr10:127187226-127187723
chr10	CG	SV	127187226	127187723	95	+	.	ID=3528;Type=complex;Left=chr10:127181647-127182254;Right=chr10:127187226-127187723
chr10	CG	SV	127583403	127584732	10	.	.	ID=3526;Type=deletion;Left=chr10:127583403-127583665+;Right=chr10:127584352-127584732+;Distance=949;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;SegDup;Self chain;RightRepeat=L1M5:LINE:L1;SegDup;Self chain;LeftGenes=NM_145235:+;RightGenes=NM_145235:+;XRef=;Frequency=0.24
chr10	CG	SV	127583403	127583665	10	+	.	ID=3526;Type=deletion;Left=chr10:127583403-127583665;Right=chr10:127584352-127584732
chr10	CG	SV	127584352	127584732	10	+	.	ID=3526;Type=deletion;Left=chr10:127583403-127583665;Right=chr10:127584352-127584732
chr10	CG	SV	127584809	127597597	79	.	.	ID=411;Type=probable-inversion;Left=chr10:127584809-127585518-;Right=chr10:127597355-127597597+;Distance=11837;DiscordantMatePairAlignments=79;LeftRepeat=MIRb:SINE:MIR;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_145235:+;RightGenes=NM_145235:+;XRef=;Frequency=0.59
chr10	CG	SV	127584809	127585518	79	-	.	ID=411;Type=probable-inversion;Left=chr10:127584809-127585518;Right=chr10:127597355-127597597
chr10	CG	SV	127597355	127597597	79	-	.	ID=411;Type=probable-inversion;Left=chr10:127584809-127585518;Right=chr10:127597355-127597597
chr10	CG	SV	127735176	127736727	353	.	.	ID=3525;Type=deletion;Left=chr10:127735176-127735806+;Right=chr10:127735976-127736727+;Distance=800;DiscordantMatePairAlignments=353;LeftRepeat=;RightRepeat=;LeftGenes=NM_003474:-;NM_021641:-;RightGenes=NM_003474:-;NM_021641:-;XRef=rs67650775 (chr10:127735174-127735974);Frequency=0.94
chr10	CG	SV	127735176	127735806	353	+	.	ID=3525;Type=deletion;Left=chr10:127735176-127735806;Right=chr10:127735976-127736727
chr10	CG	SV	127735976	127736727	353	+	.	ID=3525;Type=deletion;Left=chr10:127735176-127735806;Right=chr10:127735976-127736727
chr10	CG	SV	128096475	128097369	15	.	.	ID=3524;Type=deletion;Left=chr10:128096475-128097219+;Right=chr10:128096789-128097369+;Distance=314;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67292503 (chr10:128096462-128096776);Frequency=1.00
chr10	CG	SV	128096475	128097219	15	+	.	ID=3524;Type=deletion;Left=chr10:128096475-128097219;Right=chr10:128096789-128097369
chr10	CG	SV	128096789	128097369	15	+	.	ID=3524;Type=deletion;Left=chr10:128096475-128097219;Right=chr10:128096789-128097369
chr10	CG	SV	132048511	132049522	21	.	.	ID=3521;Type=deletion;Left=chr10:132048511-132049051+;Right=chr10:132048967-132049522+;Distance=456;DiscordantMatePairAlignments=21;LeftRepeat=(TC)n:Simple_repeat:Simple_repeat;Tandem CTCTCT;Tandem period 10;Tandem period 14;Tandem period 8;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs33996726 (chr10:132048415-132048801);Frequency=1.00
chr10	CG	SV	132048511	132049051	21	+	.	ID=3521;Type=deletion;Left=chr10:132048511-132049051;Right=chr10:132048967-132049522
chr10	CG	SV	132048967	132049522	21	+	.	ID=3521;Type=deletion;Left=chr10:132048511-132049051;Right=chr10:132048967-132049522
chr10	CG	SV	132147800	132148826	23	.	.	ID=3520;Type=deletion;Left=chr10:132147800-132148349+;Right=chr10:132148344-132148826+;Distance=544;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;Tandem period 26;RightRepeat=Self chain;Tandem period 26;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr10	CG	SV	132147800	132148349	23	+	.	ID=3520;Type=deletion;Left=chr10:132147800-132148349;Right=chr10:132148344-132148826
chr10	CG	SV	132148344	132148826	23	+	.	ID=3520;Type=deletion;Left=chr10:132147800-132148349;Right=chr10:132148344-132148826
chr10	CG	SV	132748479	132749396	19	.	.	ID=3519;Type=deletion;Left=chr10:132748479-132749169+;Right=chr10:132748828-132749396+;Distance=349;DiscordantMatePairAlignments=19;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67000284 (chr10:132748479-132748828);Frequency=0.76
chr10	CG	SV	132748479	132749169	19	+	.	ID=3519;Type=deletion;Left=chr10:132748479-132749169;Right=chr10:132748828-132749396
chr10	CG	SV	132748828	132749396	19	+	.	ID=3519;Type=deletion;Left=chr10:132748479-132749169;Right=chr10:132748828-132749396
chr10	CG	SV	133501900	133502333	34	.	.	ID=1489;Type=tandem-duplication;Left=chr10:133501900-133502116-;Right=chr10:133502124-133502333-;Distance=217;DiscordantMatePairAlignments=34;LeftRepeat=L1MD2:LINE:L1;Self chain;Tandem period 60;RightRepeat=L1MD2:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr10	CG	SV	133501900	133502116	34	-	.	ID=1489;Type=tandem-duplication;Left=chr10:133501900-133502116;Right=chr10:133502124-133502333
chr10	CG	SV	133502124	133502333	34	-	.	ID=1489;Type=tandem-duplication;Left=chr10:133501900-133502116;Right=chr10:133502124-133502333
chr10	CG	SV	134027698	134028337	10	.	.	ID=1488;Type=tandem-duplication;Left=chr10:134027698-134027826-;Right=chr10:134028140-134028337-;Distance=511;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=C-rich:Low_complexity:Low_complexity;Self chain;LeftGenes=NM_001143757:+;NM_030626:+;NR_026559:+;RightGenes=NM_001143757:+;NM_030626:+;NR_026559:+;XRef=;Frequency=0.88
chr10	CG	SV	134027698	134027826	10	-	.	ID=1488;Type=tandem-duplication;Left=chr10:134027698-134027826;Right=chr10:134028140-134028337
chr10	CG	SV	134028140	134028337	10	-	.	ID=1488;Type=tandem-duplication;Left=chr10:134027698-134027826;Right=chr10:134028140-134028337
chr10	CG	SV	134577603	134578887	77	.	.	ID=3513;Type=deletion;Left=chr10:134577603-134578207+;Right=chr10:134578329-134578887+;Distance=726;DiscordantMatePairAlignments=77;LeftRepeat=Self chain;Tandem period 33;RightRepeat=Self chain;Tandem period 33;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr10	CG	SV	134577603	134578207	77	+	.	ID=3513;Type=deletion;Left=chr10:134577603-134578207;Right=chr10:134578329-134578887
chr10	CG	SV	134578329	134578887	77	+	.	ID=3513;Type=deletion;Left=chr10:134577603-134578207;Right=chr10:134578329-134578887
chr10	CG	SV	134954790	134956653	248	.	.	ID=3510;Type=deletion;Left=chr10:134954790-134955506+;Right=chr10:134955981-134956653+;Distance=1191;DiscordantMatePairAlignments=248;LeftRepeat=Self chain;Tandem period 188;Tandem period 94;RightRepeat=Self chain;LeftGenes=NM_006659:-;RightGenes=NM_006659:-;XRef=rs72187097 (chr10:134954841-134955956);Frequency=0.88
chr10	CG	SV	134954790	134955506	248	+	.	ID=3510;Type=deletion;Left=chr10:134954790-134955506;Right=chr10:134955981-134956653
chr10	CG	SV	134955981	134956653	248	+	.	ID=3510;Type=deletion;Left=chr10:134954790-134955506;Right=chr10:134955981-134956653
chr11	CG	SV	632604	632869	17	.	.	ID=1482;Type=tandem-duplication;Left=chr11:632604-632713-;Right=chr11:632760-632869-;Distance=156;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 16;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr11	CG	SV	632604	632713	17	-	.	ID=1482;Type=tandem-duplication;Left=chr11:632604-632713;Right=chr11:632760-632869
chr11	CG	SV	632760	632869	17	-	.	ID=1482;Type=tandem-duplication;Left=chr11:632604-632713;Right=chr11:632760-632869
chr11	CG	SV	1006092	1008244	10	.	.	ID=1479;Type=tandem-duplication;Left=chr11:1006092-1006558-;Right=chr11:1007865-1008244-;Distance=1686;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 672;LeftGenes=NM_005961:-;RightGenes=NM_005961:-;XRef=;Frequency=0.94
chr11	CG	SV	1006092	1006558	10	-	.	ID=1479;Type=tandem-duplication;Left=chr11:1006092-1006558;Right=chr11:1007865-1008244
chr11	CG	SV	1007865	1008244	10	-	.	ID=1479;Type=tandem-duplication;Left=chr11:1006092-1006558;Right=chr11:1007865-1008244
chr11	CG	SV	1168936	1170150	41	.	.	ID=1477;Type=tandem-duplication;Left=chr11:1168936-1169370-;Right=chr11:1169740-1170150-;Distance=780;DiscordantMatePairAlignments=41;LeftRepeat=Self chain;Tandem period 48;Tandem period 96;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	1168936	1169370	41	-	.	ID=1477;Type=tandem-duplication;Left=chr11:1168936-1169370;Right=chr11:1169740-1170150
chr11	CG	SV	1169740	1170150	41	-	.	ID=1477;Type=tandem-duplication;Left=chr11:1168936-1169370;Right=chr11:1169740-1170150
chr11	CG	SV	1389839	1390822	13	.	.	ID=3507;Type=deletion;Left=chr11:1389839-1390421+;Right=chr11:1390307-1390822+;Distance=468;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 36;RightRepeat=Self chain;LeftGenes=NM_003957:+;RightGenes=NM_003957:+;XRef=;Frequency=0.65
chr11	CG	SV	1389839	1390421	13	+	.	ID=3507;Type=deletion;Left=chr11:1389839-1390421;Right=chr11:1390307-1390822
chr11	CG	SV	1390307	1390822	13	+	.	ID=3507;Type=deletion;Left=chr11:1389839-1390421;Right=chr11:1390307-1390822
chr11	CG	SV	1619557	1620641	119	.	.	ID=3506;Type=deletion;Left=chr11:1619557-1620143+;Right=chr11:1620138-1620641+;Distance=581;DiscordantMatePairAlignments=119;LeftRepeat=(CACCC)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 16;Tandem period 31;RightRepeat=(CACCC)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 16;Tandem period 31;LeftGenes=NM_053005:-;RightGenes=NM_053005:-;XRef=;Frequency=0.94
chr11	CG	SV	1619557	1620143	119	+	.	ID=3506;Type=deletion;Left=chr11:1619557-1620143;Right=chr11:1620138-1620641
chr11	CG	SV	1620138	1620641	119	+	.	ID=3506;Type=deletion;Left=chr11:1619557-1620143;Right=chr11:1620138-1620641
chr11	CG	SV	1871839	1894191	141	.	.	ID=3505;Type=deletion;Left=chr11:1871839-1872295+;Right=chr11:1893531-1894191+;Distance=21692;DiscordantMatePairAlignments=141;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	1871839	1872295	141	+	.	ID=3505;Type=deletion;Left=chr11:1871839-1872295;Right=chr11:1893531-1894191
chr11	CG	SV	1893531	1894191	141	+	.	ID=3505;Type=deletion;Left=chr11:1871839-1872295;Right=chr11:1893531-1894191
chr11	CG	SV	5716663	5719557	53	.	.	ID=3497;Type=deletion;Left=chr11:5716663-5717197+;Right=chr11:5718941-5719557+;Distance=2278;DiscordantMatePairAlignments=53;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr11	CG	SV	5716663	5717197	53	+	.	ID=3497;Type=deletion;Left=chr11:5716663-5717197;Right=chr11:5718941-5719557
chr11	CG	SV	5718941	5719557	53	+	.	ID=3497;Type=deletion;Left=chr11:5716663-5717197;Right=chr11:5718941-5719557
chr11	CG	SV	5741151	5766404	62	.	.	ID=3496;Type=deletion;Left=chr11:5741151-5741598+;Right=chr11:5765860-5766404+;Distance=24709;DiscordantMatePairAlignments=62;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001001913:-;XRef=;Frequency=0.47
chr11	CG	SV	5741151	5741598	62	+	.	ID=3496;Type=deletion;Left=chr11:5741151-5741598;Right=chr11:5765860-5766404
chr11	CG	SV	5765860	5766404	62	+	.	ID=3496;Type=deletion;Left=chr11:5741151-5741598;Right=chr11:5765860-5766404
chr11	CG	SV	7673491	7674427	18	.	.	ID=3494;Type=deletion;Left=chr11:7673491-7674182+;Right=chr11:7673807-7674427+;Distance=316;DiscordantMatePairAlignments=18;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_198185:-;RightGenes=NM_198185:-;XRef=rs6144199 (chr11:7673479-7673795);Frequency=1.00
chr11	CG	SV	7673491	7674182	18	+	.	ID=3494;Type=deletion;Left=chr11:7673491-7674182;Right=chr11:7673807-7674427
chr11	CG	SV	7673807	7674427	18	+	.	ID=3494;Type=deletion;Left=chr11:7673491-7674182;Right=chr11:7673807-7674427
chr11	CG	SV	9280327	9281760	21	.	.	ID=3493;Type=deletion;Left=chr11:9280327-9280846+;Right=chr11:9281335-9281760+;Distance=1008;DiscordantMatePairAlignments=21;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_001165030:-;NM_015012:-;NR_028491:-;RightGenes=NM_001165030:-;NM_015012:-;NR_028491:-;XRef=rs72400718 (chr11:9280262-9281272);Frequency=0.71
chr11	CG	SV	9280327	9280846	21	+	.	ID=3493;Type=deletion;Left=chr11:9280327-9280846;Right=chr11:9281335-9281760
chr11	CG	SV	9281335	9281760	21	+	.	ID=3493;Type=deletion;Left=chr11:9280327-9280846;Right=chr11:9281335-9281760
chr11	CG	SV	12109134	12109955	10	.	.	ID=3489;Type=deletion;Left=chr11:12109134-12109785+;Right=chr11:12109458-12109955+;Distance=324;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_014632:+;RightGenes=NM_014632:+;XRef=rs66607256 (chr11:12109120-12109444);Frequency=0.88
chr11	CG	SV	12109134	12109785	10	+	.	ID=3489;Type=deletion;Left=chr11:12109134-12109785;Right=chr11:12109458-12109955
chr11	CG	SV	12109458	12109955	10	+	.	ID=3489;Type=deletion;Left=chr11:12109134-12109785;Right=chr11:12109458-12109955
chr11	CG	SV	19708432	19714847	107	.	.	ID=3481;Type=deletion;Left=chr11:19708432-19709016+;Right=chr11:19714181-19714847+;Distance=5749;DiscordantMatePairAlignments=107;LeftRepeat=;RightRepeat=;LeftGenes=NM_001111018:+;NM_145117:+;NM_182964:+;RightGenes=NM_001111018:+;NM_145117:+;NM_182964:+;XRef=;Frequency=0.00
chr11	CG	SV	19708432	19709016	107	+	.	ID=3481;Type=deletion;Left=chr11:19708432-19709016;Right=chr11:19714181-19714847
chr11	CG	SV	19714181	19714847	107	+	.	ID=3481;Type=deletion;Left=chr11:19708432-19709016;Right=chr11:19714181-19714847
chr11	CG	SV	20801133	20807119	103	.	.	ID=3479;Type=deletion;Left=chr11:20801133-20801679+;Right=chr11:20806526-20807119+;Distance=5393;DiscordantMatePairAlignments=103;LeftRepeat=;RightRepeat=;LeftGenes=NM_006157:+;NM_201551:+;RightGenes=NM_006157:+;NM_201551:+;XRef=;Frequency=0.20
chr11	CG	SV	20801133	20801679	103	+	.	ID=3479;Type=deletion;Left=chr11:20801133-20801679;Right=chr11:20806526-20807119
chr11	CG	SV	20806526	20807119	103	+	.	ID=3479;Type=deletion;Left=chr11:20801133-20801679;Right=chr11:20806526-20807119
chr11	CG	SV	24399729	24409456	131	.	.	ID=3478;Type=deletion;Left=chr11:24399729-24400408+;Right=chr11:24408863-24409456+;Distance=9134;DiscordantMatePairAlignments=131;LeftRepeat=;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr11	CG	SV	24399729	24400408	131	+	.	ID=3478;Type=deletion;Left=chr11:24399729-24400408;Right=chr11:24408863-24409456
chr11	CG	SV	24408863	24409456	131	+	.	ID=3478;Type=deletion;Left=chr11:24399729-24400408;Right=chr11:24408863-24409456
chr11	CG	SV	29096067	29097325	22	.	.	ID=3475;Type=deletion;Left=chr11:29096067-29096701+;Right=chr11:29097016-29097325+;Distance=949;DiscordantMatePairAlignments=22;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr11	CG	SV	29096067	29096701	22	+	.	ID=3475;Type=deletion;Left=chr11:29096067-29096701;Right=chr11:29097016-29097325
chr11	CG	SV	29097016	29097325	22	+	.	ID=3475;Type=deletion;Left=chr11:29096067-29096701;Right=chr11:29097016-29097325
chr11	CG	SV	29924155	29925661	65	.	.	ID=3474;Type=deletion;Left=chr11:29924155-29924844+;Right=chr11:29925043-29925661+;Distance=888;DiscordantMatePairAlignments=65;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72176999 (chr11:29924154-29925042);Frequency=0.71
chr11	CG	SV	29924155	29924844	65	+	.	ID=3474;Type=deletion;Left=chr11:29924155-29924844;Right=chr11:29925043-29925661
chr11	CG	SV	29925043	29925661	65	+	.	ID=3474;Type=deletion;Left=chr11:29924155-29924844;Right=chr11:29925043-29925661
chr11	CG	SV	34684699	34685723	17	.	.	ID=3469;Type=deletion;Left=chr11:34684699-34685213+;Right=chr11:34685194-34685723+;Distance=495;DiscordantMatePairAlignments=17;LeftRepeat=L1MA2:LINE:L1;RightRepeat=L1MA2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr11	CG	SV	34684699	34685213	17	+	.	ID=3469;Type=deletion;Left=chr11:34684699-34685213;Right=chr11:34685194-34685723
chr11	CG	SV	34685194	34685723	17	+	.	ID=3469;Type=deletion;Left=chr11:34684699-34685213;Right=chr11:34685194-34685723
chr11	CG	SV	37678950	37695111	68	.	.	ID=1471;Type=tandem-duplication;Left=chr11:37678950-37679545-;Right=chr11:37694492-37695111-;Distance=15566;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	37678950	37679545	68	-	.	ID=1471;Type=tandem-duplication;Left=chr11:37678950-37679545;Right=chr11:37694492-37695111
chr11	CG	SV	37694492	37695111	68	-	.	ID=1471;Type=tandem-duplication;Left=chr11:37678950-37679545;Right=chr11:37694492-37695111
chr11	CG	SV	41118867	41123610	47	.	.	ID=5455;Type=probable-inversion;Left=chr11:41118867-41119167+;Right=chr11:41123001-41123610-;Distance=4743;DiscordantMatePairAlignments=47;LeftRepeat=MER92B:LTR:ERV1;Self chain;RightRepeat=MER58A:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.25
chr11	CG	SV	41118867	41119167	47	+	.	ID=5455;Type=probable-inversion;Left=chr11:41118867-41119167;Right=chr11:41123001-41123610
chr11	CG	SV	41123001	41123610	47	+	.	ID=5455;Type=probable-inversion;Left=chr11:41118867-41119167;Right=chr11:41123001-41123610
chr11	CG	SV	43848420	43849344	15	.	.	ID=3464;Type=deletion;Left=chr11:43848420-43849088+;Right=chr11:43848756-43849344+;Distance=336;DiscordantMatePairAlignments=15;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs10525689 (chr11:43848420-43848756);Frequency=1.00
chr11	CG	SV	43848420	43849088	15	+	.	ID=3464;Type=deletion;Left=chr11:43848420-43849088;Right=chr11:43848756-43849344
chr11	CG	SV	43848756	43849344	15	+	.	ID=3464;Type=deletion;Left=chr11:43848420-43849088;Right=chr11:43848756-43849344
chr11	CG	SV	45386425	45388883	124	.	.	ID=3463;Type=deletion;Left=chr11:45386425-45386961+;Right=chr11:45388192-45388883+;Distance=1767;DiscordantMatePairAlignments=124;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=rs66503754 (chr11:45386425-45388192);Frequency=0.94
chr11	CG	SV	45386425	45386961	124	+	.	ID=3463;Type=deletion;Left=chr11:45386425-45386961;Right=chr11:45388192-45388883
chr11	CG	SV	45388192	45388883	124	+	.	ID=3463;Type=deletion;Left=chr11:45386425-45386961;Right=chr11:45388192-45388883
chr11	CG	SV	47014164	47020838	38	.	.	ID=3460;Type=deletion;Left=chr11:47014164-47014626+;Right=chr11:47020282-47020838+;Distance=6118;DiscordantMatePairAlignments=38;LeftRepeat=(TA)n:Simple_repeat:Simple_repeat;Tandem AT;Tandem ATATA;Tandem period 7;RightRepeat=AluJo:SINE:Alu;LeftGenes=NM_001003676:+;NM_001003677:+;NM_001003678:+;NM_024113:+;RightGenes=NM_001003676:+;NM_001003677:+;NM_001003678:+;NM_024113:+;XRef=;Frequency=0.76
chr11	CG	SV	47014164	47014626	38	+	.	ID=3460;Type=deletion;Left=chr11:47014164-47014626;Right=chr11:47020282-47020838
chr11	CG	SV	47020282	47020838	38	+	.	ID=3460;Type=deletion;Left=chr11:47014164-47014626;Right=chr11:47020282-47020838
chr11	CG	SV	47844243	47845255	84	.	.	ID=3459;Type=deletion;Left=chr11:47844243-47844704+;Right=chr11:47844770-47845255+;Distance=527;DiscordantMatePairAlignments=84;LeftRepeat=AluSp:SINE:Alu;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr11	CG	SV	47844243	47844704	84	+	.	ID=3459;Type=deletion;Left=chr11:47844243-47844704;Right=chr11:47844770-47845255
chr11	CG	SV	47844770	47845255	84	+	.	ID=3459;Type=deletion;Left=chr11:47844243-47844704;Right=chr11:47844770-47845255
chr11	CG	SV	48076647	48077643	12	.	.	ID=3458;Type=deletion;Left=chr11:48076647-48077289+;Right=chr11:48076956-48077643+;Distance=309;DiscordantMatePairAlignments=12;LeftRepeat=AluYg6:SINE:Alu;RightRepeat=;LeftGenes=NM_001098503:+;NM_002843:+;RightGenes=NM_001098503:+;NM_002843:+;XRef=rs71842536 (chr11:48076647-48076956);Frequency=0.94
chr11	CG	SV	48076647	48077289	12	+	.	ID=3458;Type=deletion;Left=chr11:48076647-48077289;Right=chr11:48076956-48077643
chr11	CG	SV	48076956	48077643	12	+	.	ID=3458;Type=deletion;Left=chr11:48076647-48077289;Right=chr11:48076956-48077643
chr11	CG	SV	48308216	48309320	13	.	.	ID=3457;Type=deletion;Left=chr11:48308216-48308606+;Right=chr11:48308718-48309320+;Distance=502;DiscordantMatePairAlignments=13;LeftRepeat=(TTTTA)n:Simple_repeat:Simple_repeat;Tandem TTATT;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	48308216	48308606	13	+	.	ID=3457;Type=deletion;Left=chr11:48308216-48308606;Right=chr11:48308718-48309320
chr11	CG	SV	48308718	48309320	13	+	.	ID=3457;Type=deletion;Left=chr11:48308216-48308606;Right=chr11:48308718-48309320
chr11	CG	SV	48324094	48330790	116	.	.	ID=3455;Type=deletion;Left=chr11:48324094-48324705+;Right=chr11:48330275-48330790+;Distance=6181;DiscordantMatePairAlignments=116;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001005513:-;RightGenes=NM_001005513:-;XRef=rs71787435 (chr11:48324104-48330285);Frequency=1.00
chr11	CG	SV	48324094	48324705	116	+	.	ID=3455;Type=deletion;Left=chr11:48324094-48324705;Right=chr11:48330275-48330790
chr11	CG	SV	48330275	48330790	116	+	.	ID=3455;Type=deletion;Left=chr11:48324094-48324705;Right=chr11:48330275-48330790
chr11	CG	SV	56196348	56197378	25	.	.	ID=3440;Type=deletion;Left=chr11:56196348-56196973+;Right=chr11:56196845-56197378+;Distance=497;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001013356:+;RightGenes=NM_001013356:+;XRef=;Frequency=0.24
chr11	CG	SV	56196348	56196973	25	+	.	ID=3440;Type=deletion;Left=chr11:56196348-56196973;Right=chr11:56196845-56197378
chr11	CG	SV	56196845	56197378	25	+	.	ID=3440;Type=deletion;Left=chr11:56196348-56196973;Right=chr11:56196845-56197378
chr11	CG	SV	57723406	78046674	93	.	.	ID=404;Type=distal-duplication;Left=chr11:57723406-57723909-;Right=chr11:78046503-78046674+;Distance=20322594;DiscordantMatePairAlignments=93;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001098816:-;XRef=;Frequency=0.65
chr11	CG	SV	57723406	57723909	93	-	.	ID=404;Type=distal-duplication;Left=chr11:57723406-57723909;Right=chr11:78046503-78046674
chr11	CG	SV	78046503	78046674	93	-	.	ID=404;Type=distal-duplication;Left=chr11:57723406-57723909;Right=chr11:78046503-78046674
chr11	CG	SV	57723924	78046672	85	.	.	ID=5450;Type=distal-duplication;Left=chr11:57723924-57724553+;Right=chr11:78046501-78046672-;Distance=20322748;DiscordantMatePairAlignments=85;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001098816:-;XRef=;Frequency=0.65
chr11	CG	SV	57723924	57724553	85	+	.	ID=5450;Type=distal-duplication;Left=chr11:57723924-57724553;Right=chr11:78046501-78046672
chr11	CG	SV	78046501	78046672	85	+	.	ID=5450;Type=distal-duplication;Left=chr11:57723924-57724553;Right=chr11:78046501-78046672
chr11	CG	SV	57923563	57925284	177	.	.	ID=3439;Type=deletion;Left=chr11:57923563-57924202+;Right=chr11:57924731-57925284+;Distance=1168;DiscordantMatePairAlignments=177;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72147631 (chr11:57923575-57924743);Frequency=0.71
chr11	CG	SV	57923563	57924202	177	+	.	ID=3439;Type=deletion;Left=chr11:57923563-57924202;Right=chr11:57924731-57925284
chr11	CG	SV	57924731	57925284	177	+	.	ID=3439;Type=deletion;Left=chr11:57923563-57924202;Right=chr11:57924731-57925284
chr11	CG	SV	58350764	58353219	52	.	.	ID=3437;Type=deletion;Left=chr11:58350764-58351363+;Right=chr11:58352595-58353219+;Distance=1831;DiscordantMatePairAlignments=52;LeftRepeat=MER4A1-int:LTR:ERV1;Self chain;RightRepeat=MER4A1:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr11	CG	SV	58350764	58351363	52	+	.	ID=3437;Type=deletion;Left=chr11:58350764-58351363;Right=chr11:58352595-58353219
chr11	CG	SV	58352595	58353219	52	+	.	ID=3437;Type=deletion;Left=chr11:58350764-58351363;Right=chr11:58352595-58353219
chr11	CG	SV	58388350	58393662	26	.	.	ID=3436;Type=deletion;Left=chr11:58388350-58388980+;Right=chr11:58393131-58393662+;Distance=4781;DiscordantMatePairAlignments=26;LeftRepeat=L1M2:LINE:L1;Self chain;RightRepeat=LOR1-int:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	58388350	58388980	26	+	.	ID=3436;Type=deletion;Left=chr11:58388350-58388980;Right=chr11:58393131-58393662
chr11	CG	SV	58393131	58393662	26	+	.	ID=3436;Type=deletion;Left=chr11:58388350-58388980;Right=chr11:58393131-58393662
chr11	CG	SV	60328185	60329016	75	.	.	ID=3434;Type=deletion;Left=chr11:60328185-60328927+;Right=chr11:60328672-60329016+;Distance=487;DiscordantMatePairAlignments=75;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr11	CG	SV	60328185	60328927	75	+	.	ID=3434;Type=deletion;Left=chr11:60328185-60328927;Right=chr11:60328672-60329016
chr11	CG	SV	60328672	60329016	75	+	.	ID=3434;Type=deletion;Left=chr11:60328185-60328927;Right=chr11:60328672-60329016
chr11	CG	SV	65398687	65400784	16	.	.	ID=3429;Type=deletion;Left=chr11:65398687-65398927+;Right=chr11:65400102-65400784+;Distance=1415;DiscordantMatePairAlignments=16;LeftRepeat=L1MB7:LINE:L1;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72504434 (chr11:65398683-65400095);Frequency=0.82
chr11	CG	SV	65398687	65398927	16	+	.	ID=3429;Type=deletion;Left=chr11:65398687-65398927;Right=chr11:65400102-65400784
chr11	CG	SV	65400102	65400784	16	+	.	ID=3429;Type=deletion;Left=chr11:65398687-65398927;Right=chr11:65400102-65400784
chr11	CG	SV	65775274	65776457	85	.	.	ID=5452;Type=complex;Left=chr11:65775274-65775753+;Right=chr11:65775712-65776457-;Distance=1183;DiscordantMatePairAlignments=85;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr11	CG	SV	65775274	65775753	85	+	.	ID=5452;Type=complex;Left=chr11:65775274-65775753;Right=chr11:65775712-65776457
chr11	CG	SV	65775712	65776457	85	+	.	ID=5452;Type=complex;Left=chr11:65775274-65775753;Right=chr11:65775712-65776457
chr11	CG	SV	65774823	65776870	42	.	.	ID=406;Type=complex;Left=chr11:65774823-65775568-;Right=chr11:65776578-65776870+;Distance=1010;DiscordantMatePairAlignments=42;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr11	CG	SV	65774823	65775568	42	-	.	ID=406;Type=complex;Left=chr11:65774823-65775568;Right=chr11:65776578-65776870
chr11	CG	SV	65776578	65776870	42	-	.	ID=406;Type=complex;Left=chr11:65774823-65775568;Right=chr11:65776578-65776870
chr11	CG	SV	67086873	67089353	20	.	.	ID=3427;Type=deletion;Left=chr11:67086873-67087680+;Right=chr11:67089129-67089353+;Distance=2256;DiscordantMatePairAlignments=20;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	67086873	67087680	20	+	.	ID=3427;Type=deletion;Left=chr11:67086873-67087680;Right=chr11:67089129-67089353
chr11	CG	SV	67089129	67089353	20	+	.	ID=3427;Type=deletion;Left=chr11:67086873-67087680;Right=chr11:67089129-67089353
chr11	CG	SV	68487934	68488190	10	.	.	ID=1461;Type=tandem-duplication;Left=chr11:68487934-68488030-;Right=chr11:68488062-68488190-;Distance=160;DiscordantMatePairAlignments=10;LeftRepeat=MLT1K:LTR:MaLR;Self chain;Tandem period 33;Tandem period 99;RightRepeat=Self chain;Tandem period 33;Tandem period 99;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	68487934	68488030	10	-	.	ID=1461;Type=tandem-duplication;Left=chr11:68487934-68488030;Right=chr11:68488062-68488190
chr11	CG	SV	68488062	68488190	10	-	.	ID=1461;Type=tandem-duplication;Left=chr11:68487934-68488030;Right=chr11:68488062-68488190
chr11	CG	SV	69110024	69111063	51	.	.	ID=3425;Type=deletion;Left=chr11:69110024-69110631+;Right=chr11:69110586-69111063+;Distance=562;DiscordantMatePairAlignments=51;LeftRepeat=Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72437253 (chr11:69110024-69110586);Frequency=1.00
chr11	CG	SV	69110024	69110631	51	+	.	ID=3425;Type=deletion;Left=chr11:69110024-69110631;Right=chr11:69110586-69111063
chr11	CG	SV	69110586	69111063	51	+	.	ID=3425;Type=deletion;Left=chr11:69110024-69110631;Right=chr11:69110586-69111063
chr11	CG	SV	69367713	69368314	97	.	.	ID=3423;Type=complex;Left=chr11:69367713-69368080+;Right=chr11:69367880-69368314+;Distance=167;DiscordantMatePairAlignments=97;LeftRepeat=Self chain;RightRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;Tandem GAT;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	69367713	69368080	97	+	.	ID=3423;Type=complex;Left=chr11:69367713-69368080;Right=chr11:69367880-69368314
chr11	CG	SV	69367880	69368314	97	+	.	ID=3423;Type=complex;Left=chr11:69367713-69368080;Right=chr11:69367880-69368314
chr11	CG	SV	69367638	69368228	13	.	.	ID=1460;Type=complex;Left=chr11:69367638-69367933-;Right=chr11:69368145-69368228-;Distance=295;DiscordantMatePairAlignments=13;LeftRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=(ATG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	69367638	69367933	13	-	.	ID=1460;Type=complex;Left=chr11:69367638-69367933;Right=chr11:69368145-69368228
chr11	CG	SV	69368145	69368228	13	-	.	ID=1460;Type=complex;Left=chr11:69367638-69367933;Right=chr11:69368145-69368228
chr11	CG	SV	69660201	69662749	54	.	.	ID=3422;Type=deletion;Left=chr11:69660201-69660705+;Right=chr11:69662136-69662749+;Distance=1935;DiscordantMatePairAlignments=54;LeftRepeat=Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=NM_018043:+;NR_030691:+;RightGenes=NM_018043:+;NR_030691:+;XRef=;Frequency=0.06
chr11	CG	SV	69660201	69660705	54	+	.	ID=3422;Type=deletion;Left=chr11:69660201-69660705;Right=chr11:69662136-69662749
chr11	CG	SV	69662136	69662749	54	+	.	ID=3422;Type=deletion;Left=chr11:69660201-69660705;Right=chr11:69662136-69662749
chr11	CG	SV	69894906	69895324	29	.	.	ID=1459;Type=tandem-duplication;Left=chr11:69894906-69895082-;Right=chr11:69895149-69895324-;Distance=242;DiscordantMatePairAlignments=29;LeftRepeat=L1MD:LINE:L1;Self chain;Tandem period 27;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=NM_003626:+;NM_177423:+;RightGenes=NM_003626:+;NM_177423:+;XRef=;Frequency=1.00
chr11	CG	SV	69894906	69895082	29	-	.	ID=1459;Type=tandem-duplication;Left=chr11:69894906-69895082;Right=chr11:69895149-69895324
chr11	CG	SV	69895149	69895324	29	-	.	ID=1459;Type=tandem-duplication;Left=chr11:69894906-69895082;Right=chr11:69895149-69895324
chr11	CG	SV	81534058	81541517	53	.	.	ID=3415;Type=deletion;Left=chr11:81534058-81534515+;Right=chr11:81540993-81541517+;Distance=6935;DiscordantMatePairAlignments=53;LeftRepeat=L1MCb:LINE:L1;Self chain;RightRepeat=L1ME1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr11	CG	SV	81534058	81534515	53	+	.	ID=3415;Type=deletion;Left=chr11:81534058-81534515;Right=chr11:81540993-81541517
chr11	CG	SV	81540993	81541517	53	+	.	ID=3415;Type=deletion;Left=chr11:81534058-81534515;Right=chr11:81540993-81541517
chr11	CG	SV	84193894	84260494	61	.	.	ID=3413;Type=deletion;Left=chr11:84193894-84194462+;Right=chr11:84260053-84260494+;Distance=66159;DiscordantMatePairAlignments=61;LeftRepeat=L1MD1:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_001142699:-;NM_001364:-;RightGenes=NM_001142699:-;NM_001364:-;XRef=;Frequency=0.00
chr11	CG	SV	84193894	84194462	61	+	.	ID=3413;Type=deletion;Left=chr11:84193894-84194462;Right=chr11:84260053-84260494
chr11	CG	SV	84260053	84260494	61	+	.	ID=3413;Type=deletion;Left=chr11:84193894-84194462;Right=chr11:84260053-84260494
chr11	CG	SV	85963609	85964991	121	.	.	ID=3412;Type=deletion;Left=chr11:85963609-85964166+;Right=chr11:85964370-85964991+;Distance=761;DiscordantMatePairAlignments=121;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001014811:-;NM_001161586:-;NM_006680:-;RightGenes=NM_001014811:-;NM_001161586:-;NM_006680:-;XRef=rs71790699 (chr11:85963609-85964370);Frequency=0.18
chr11	CG	SV	85963609	85964166	121	+	.	ID=3412;Type=deletion;Left=chr11:85963609-85964166;Right=chr11:85964370-85964991
chr11	CG	SV	85964370	85964991	121	+	.	ID=3412;Type=deletion;Left=chr11:85963609-85964166;Right=chr11:85964370-85964991
chr11	CG	SV	89833356	89836248	116	.	.	ID=3411;Type=deletion;Left=chr11:89833356-89833743+;Right=chr11:89835647-89836248+;Distance=2291;DiscordantMatePairAlignments=116;LeftRepeat=;RightRepeat=L1MB1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr11	CG	SV	89833356	89833743	116	+	.	ID=3411;Type=deletion;Left=chr11:89833356-89833743;Right=chr11:89835647-89836248
chr11	CG	SV	89835647	89836248	116	+	.	ID=3411;Type=deletion;Left=chr11:89833356-89833743;Right=chr11:89835647-89836248
chr11	CG	SV	97753418	97754576	32	.	.	ID=3406;Type=deletion;Left=chr11:97753418-97754054+;Right=chr11:97753812-97754576+;Distance=394;DiscordantMatePairAlignments=32;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67075251 (chr11:97753418-97753812);Frequency=0.59
chr11	CG	SV	97753418	97754054	32	+	.	ID=3406;Type=deletion;Left=chr11:97753418-97754054;Right=chr11:97753812-97754576
chr11	CG	SV	97753812	97754576	32	+	.	ID=3406;Type=deletion;Left=chr11:97753418-97754054;Right=chr11:97753812-97754576
chr11	CG	SV	99195693	99196517	110	.	.	ID=5440;Type=probable-inversion;Left=chr11:99195693-99196114+;Right=chr11:99196137-99196517-;Distance=824;DiscordantMatePairAlignments=110;LeftRepeat=;RightRepeat=;LeftGenes=NM_014361:+;NM_175566:+;RightGenes=NM_014361:+;NM_175566:+;XRef=;Frequency=1.00
chr11	CG	SV	99195693	99196114	110	+	.	ID=5440;Type=probable-inversion;Left=chr11:99195693-99196114;Right=chr11:99196137-99196517
chr11	CG	SV	99196137	99196517	110	+	.	ID=5440;Type=probable-inversion;Left=chr11:99195693-99196114;Right=chr11:99196137-99196517
chr11	CG	SV	103515693	103516657	12	.	.	ID=3403;Type=deletion;Left=chr11:103515693-103516370+;Right=chr11:103516037-103516657+;Distance=344;DiscordantMatePairAlignments=12;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_025208:-;NM_033135:-;RightGenes=NM_025208:-;NM_033135:-;XRef=rs67756655 (chr11:103515683-103516027);Frequency=0.88
chr11	CG	SV	103515693	103516370	12	+	.	ID=3403;Type=deletion;Left=chr11:103515693-103516370;Right=chr11:103516037-103516657
chr11	CG	SV	103516037	103516657	12	+	.	ID=3403;Type=deletion;Left=chr11:103515693-103516370;Right=chr11:103516037-103516657
chr11	CG	SV	103772961	103779040	226	.	.	ID=3402;Type=deletion;Left=chr11:103772961-103773565+;Right=chr11:103778442-103779040+;Distance=5481;DiscordantMatePairAlignments=226;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67498645 (chr11:103772958-103778439);Frequency=0.88
chr11	CG	SV	103772961	103773565	226	+	.	ID=3402;Type=deletion;Left=chr11:103772961-103773565;Right=chr11:103778442-103779040
chr11	CG	SV	103778442	103779040	226	+	.	ID=3402;Type=deletion;Left=chr11:103772961-103773565;Right=chr11:103778442-103779040
chr11	CG	SV	104900058	104900463	10	.	.	ID=1448;Type=tandem-duplication;Left=chr11:104900058-104900268-;Right=chr11:104900279-104900463-;Distance=195;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr11	CG	SV	104900058	104900268	10	-	.	ID=1448;Type=tandem-duplication;Left=chr11:104900058-104900268;Right=chr11:104900279-104900463
chr11	CG	SV	104900279	104900463	10	-	.	ID=1448;Type=tandem-duplication;Left=chr11:104900058-104900268;Right=chr11:104900279-104900463
chr11	CG	SV	113930121	113937736	204	.	.	ID=3397;Type=deletion;Left=chr11:113930121-113930721+;Right=chr11:113937141-113937736+;Distance=7020;DiscordantMatePairAlignments=204;LeftRepeat=MLT1J:LTR:MaLR;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_152315:-;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	113930121	113930721	204	+	.	ID=3397;Type=deletion;Left=chr11:113930121-113930721;Right=chr11:113937141-113937736
chr11	CG	SV	113937141	113937736	204	+	.	ID=3397;Type=deletion;Left=chr11:113930121-113930721;Right=chr11:113937141-113937736
chr11	CG	SV	113938523	130736055	166	.	.	ID=3384;Type=deletion;Left=chr11:113938523-113939127+;Right=chr11:130735676-130736055+;Distance=16797153;DiscordantMatePairAlignments=166;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	113938523	113939127	166	+	.	ID=3384;Type=deletion;Left=chr11:113938523-113939127;Right=chr11:130735676-130736055
chr11	CG	SV	130735676	130736055	166	+	.	ID=3384;Type=deletion;Left=chr11:113938523-113939127;Right=chr11:130735676-130736055
chr11	CG	SV	121852806	121855160	266	.	.	ID=3390;Type=deletion;Left=chr11:121852806-121853334+;Right=chr11:121854510-121855160+;Distance=1704;DiscordantMatePairAlignments=266;LeftRepeat=L1HS:LINE:L1;RightRepeat=GA-rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr11	CG	SV	121852806	121853334	266	+	.	ID=3390;Type=deletion;Left=chr11:121852806-121853334;Right=chr11:121854510-121855160
chr11	CG	SV	121854510	121855160	266	+	.	ID=3390;Type=deletion;Left=chr11:121852806-121853334;Right=chr11:121854510-121855160
chr11	CG	SV	126007804	126007877	17	.	.	ID=5439;Type=probable-inversion;Left=chr11:126007804-126008232+;Right=chr11:126007789-126007877-;Distance=73;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=;LeftGenes=NM_001161707:-;NM_032531:-;RightGenes=NM_001161707:-;NM_032531:-;XRef=;Frequency=1.00
chr11	CG	SV	126007804	126008232	17	+	.	ID=5439;Type=probable-inversion;Left=chr11:126007804-126008232;Right=chr11:126007789-126007877
chr11	CG	SV	126007789	126007877	17	+	.	ID=5439;Type=probable-inversion;Left=chr11:126007804-126008232;Right=chr11:126007789-126007877
chr11	CG	SV	128187926	128189267	72	.	.	ID=3387;Type=deletion;Left=chr11:128187926-128188421+;Right=chr11:128188620-128189267+;Distance=694;DiscordantMatePairAlignments=72;LeftRepeat=;RightRepeat=;LeftGenes=NM_001167681:+;NM_002017:+;RightGenes=;XRef=rs71759766 (chr11:128187927-128188620);Frequency=0.65
chr11	CG	SV	128187926	128188421	72	+	.	ID=3387;Type=deletion;Left=chr11:128187926-128188421;Right=chr11:128188620-128189267
chr11	CG	SV	128188620	128189267	72	+	.	ID=3387;Type=deletion;Left=chr11:128187926-128188421;Right=chr11:128188620-128189267
chr11	CG	SV	128518725	128521087	159	.	.	ID=3386;Type=deletion;Left=chr11:128518725-128519254+;Right=chr11:128520492-128521087+;Distance=1767;DiscordantMatePairAlignments=159;LeftRepeat=MER44C:DNA:MER2_type;RightRepeat=;LeftGenes=NM_001142685:-;RightGenes=NM_001142685:-;XRef=;Frequency=0.29
chr11	CG	SV	128518725	128519254	159	+	.	ID=3386;Type=deletion;Left=chr11:128518725-128519254;Right=chr11:128520492-128521087
chr11	CG	SV	128520492	128521087	159	+	.	ID=3386;Type=deletion;Left=chr11:128518725-128519254;Right=chr11:128520492-128521087
chr11	CG	SV	129730860	129735962	23	.	.	ID=3385;Type=deletion;Left=chr11:129730860-129731452+;Right=chr11:129735585-129735962+;Distance=4725;DiscordantMatePairAlignments=23;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	129730860	129731452	23	+	.	ID=3385;Type=deletion;Left=chr11:129730860-129731452;Right=chr11:129735585-129735962
chr11	CG	SV	129735585	129735962	23	+	.	ID=3385;Type=deletion;Left=chr11:129730860-129731452;Right=chr11:129735585-129735962
chr11	CG	SV	131588836	131589815	12	.	.	ID=3382;Type=deletion;Left=chr11:131588836-131589377+;Right=chr11:131589150-131589815+;Distance=314;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001048209:+;NM_001144058:+;NM_001144059:+;NM_016522:+;RightGenes=NM_001048209:+;NM_001144058:+;NM_001144059:+;NM_016522:+;XRef=;Frequency=0.65
chr11	CG	SV	131588836	131589377	12	+	.	ID=3382;Type=deletion;Left=chr11:131588836-131589377;Right=chr11:131589150-131589815
chr11	CG	SV	131589150	131589815	12	+	.	ID=3382;Type=deletion;Left=chr11:131588836-131589377;Right=chr11:131589150-131589815
chr11	CG	SV	134110457	134111495	79	.	.	ID=3378;Type=deletion;Left=chr11:134110457-134111061+;Right=chr11:134111069-134111495+;Distance=612;DiscordantMatePairAlignments=79;LeftRepeat=Self chain;Tandem period 36;RightRepeat=Self chain;Tandem period 36;LeftGenes=;RightGenes=;XRef=rs67758116 (chr11:134110307-134110991);Frequency=0.29
chr11	CG	SV	134110457	134111061	79	+	.	ID=3378;Type=deletion;Left=chr11:134110457-134111061;Right=chr11:134111069-134111495
chr11	CG	SV	134111069	134111495	79	+	.	ID=3378;Type=deletion;Left=chr11:134110457-134111061;Right=chr11:134111069-134111495
chr12	CG	SV	737066	745499	23	.	.	ID=3376;Type=deletion;Left=chr12:737066-737538+;Right=chr12:745049-745499+;Distance=7983;DiscordantMatePairAlignments=23;LeftRepeat=;RightRepeat=;LeftGenes=NM_018979:+;RightGenes=NM_018979:+;XRef=rs71967863 (chr12:737061-745044);Frequency=0.29
chr12	CG	SV	737066	737538	23	+	.	ID=3376;Type=deletion;Left=chr12:737066-737538;Right=chr12:745049-745499
chr12	CG	SV	745049	745499	23	+	.	ID=3376;Type=deletion;Left=chr12:737066-737538;Right=chr12:745049-745499
chr12	CG	SV	899191	900661	24	.	.	ID=3375;Type=deletion;Left=chr12:899191-899814+;Right=chr12:900000-900661+;Distance=809;DiscordantMatePairAlignments=24;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_134424:-;RightGenes=NM_134424:-;XRef=;Frequency=0.82
chr12	CG	SV	899191	899814	24	+	.	ID=3375;Type=deletion;Left=chr12:899191-899814;Right=chr12:900000-900661
chr12	CG	SV	900000	900661	24	+	.	ID=3375;Type=deletion;Left=chr12:899191-899814;Right=chr12:900000-900661
chr12	CG	SV	4952480	4953822	164	.	.	ID=3370;Type=deletion;Left=chr12:4952480-4952964+;Right=chr12:4953423-4953822+;Distance=943;DiscordantMatePairAlignments=164;LeftRepeat=Self chain;Tandem period 41;RightRepeat=Self chain;Tandem period 41;LeftGenes=;RightGenes=;XRef=rs71064124 (chr12:4952495-4953234);Frequency=1.00
chr12	CG	SV	4952480	4952964	164	+	.	ID=3370;Type=deletion;Left=chr12:4952480-4952964;Right=chr12:4953423-4953822
chr12	CG	SV	4953423	4953822	164	+	.	ID=3370;Type=deletion;Left=chr12:4952480-4952964;Right=chr12:4953423-4953822
chr12	CG	SV	6718238	6719205	13	.	.	ID=3369;Type=deletion;Left=chr12:6718238-6718794+;Right=chr12:6718881-6719205+;Distance=643;DiscordantMatePairAlignments=13;LeftRepeat=AluSc:SINE:Alu;Tandem period 134;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	6718238	6718794	13	+	.	ID=3369;Type=deletion;Left=chr12:6718238-6718794;Right=chr12:6718881-6719205
chr12	CG	SV	6718881	6719205	13	+	.	ID=3369;Type=deletion;Left=chr12:6718238-6718794;Right=chr12:6718881-6719205
chr12	CG	SV	8908347	8909801	142	.	.	ID=3367;Type=deletion;Left=chr12:8908347-8908960+;Right=chr12:8909373-8909801+;Distance=1026;DiscordantMatePairAlignments=142;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=NM_144670:+;RightGenes=NM_144670:+;XRef=rs71042150 (chr12:8908119-8909146);Frequency=1.00
chr12	CG	SV	8908347	8908960	142	+	.	ID=3367;Type=deletion;Left=chr12:8908347-8908960;Right=chr12:8909373-8909801
chr12	CG	SV	8909373	8909801	142	+	.	ID=3367;Type=deletion;Left=chr12:8908347-8908960;Right=chr12:8909373-8909801
chr12	CG	SV	11083714	11109847	26	.	.	ID=3365;Type=deletion;Left=chr12:11083714-11084159+;Right=chr12:11109331-11109847+;Distance=25617;DiscordantMatePairAlignments=26;LeftRepeat=SegDup;Self chain;RightRepeat=L1MEe:LINE:L1;Self chain;LeftGenes=NM_001098538:-;NM_006250:-;RightGenes=NM_001098538:-;NM_006250:-;XRef=;Frequency=0.59
chr12	CG	SV	11083714	11084159	26	+	.	ID=3365;Type=deletion;Left=chr12:11083714-11084159;Right=chr12:11109331-11109847
chr12	CG	SV	11109331	11109847	26	+	.	ID=3365;Type=deletion;Left=chr12:11083714-11084159;Right=chr12:11109331-11109847
chr12	CG	SV	12436096	12437892	47	.	.	ID=5436;Type=complex;Left=chr12:12436096-12436619+;Right=chr12:12437275-12437892-;Distance=1796;DiscordantMatePairAlignments=47;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_058169:+;RightGenes=NM_058169:+;XRef=;Frequency=1.00
chr12	CG	SV	12436096	12436619	47	+	.	ID=5436;Type=complex;Left=chr12:12436096-12436619;Right=chr12:12437275-12437892
chr12	CG	SV	12437275	12437892	47	+	.	ID=5436;Type=complex;Left=chr12:12436096-12436619;Right=chr12:12437275-12437892
chr12	CG	SV	12435627	12438252	106	.	.	ID=393;Type=complex;Left=chr12:12435627-12436120-;Right=chr12:12437888-12438252+;Distance=1768;DiscordantMatePairAlignments=106;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_058169:+;RightGenes=NM_058169:+;XRef=;Frequency=1.00
chr12	CG	SV	12435627	12436120	106	-	.	ID=393;Type=complex;Left=chr12:12435627-12436120;Right=chr12:12437888-12438252
chr12	CG	SV	12437888	12438252	106	-	.	ID=393;Type=complex;Left=chr12:12435627-12436120;Right=chr12:12437888-12438252
chr12	CG	SV	13055233	13056119	95	.	.	ID=1440;Type=tandem-duplication;Left=chr12:13055233-13055636-;Right=chr12:13055663-13056119-;Distance=483;DiscordantMatePairAlignments=95;LeftRepeat=MIR:SINE:MIR;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr12	CG	SV	13055233	13055636	95	-	.	ID=1440;Type=tandem-duplication;Left=chr12:13055233-13055636;Right=chr12:13055663-13056119
chr12	CG	SV	13055663	13056119	95	-	.	ID=1440;Type=tandem-duplication;Left=chr12:13055233-13055636;Right=chr12:13055663-13056119
chr12	CG	SV	16311390	16313094	170	.	.	ID=3362;Type=deletion;Left=chr12:16311390-16312021+;Right=chr12:16312550-16313094+;Distance=1160;DiscordantMatePairAlignments=170;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67843530 (chr12:16311390-16312549);Frequency=0.59
chr12	CG	SV	16311390	16312021	170	+	.	ID=3362;Type=deletion;Left=chr12:16311390-16312021;Right=chr12:16312550-16313094
chr12	CG	SV	16312550	16313094	170	+	.	ID=3362;Type=deletion;Left=chr12:16311390-16312021;Right=chr12:16312550-16313094
chr12	CG	SV	17498636	17499618	63	.	.	ID=3360;Type=deletion;Left=chr12:17498636-17499223+;Right=chr12:17499140-17499618+;Distance=504;DiscordantMatePairAlignments=63;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr12	CG	SV	17498636	17499223	63	+	.	ID=3360;Type=deletion;Left=chr12:17498636-17499223;Right=chr12:17499140-17499618
chr12	CG	SV	17499140	17499618	63	+	.	ID=3360;Type=deletion;Left=chr12:17498636-17499223;Right=chr12:17499140-17499618
chr12	CG	SV	17507658	17509480	59	.	.	ID=3359;Type=deletion;Left=chr12:17507658-17508071+;Right=chr12:17508880-17509480+;Distance=1222;DiscordantMatePairAlignments=59;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	17507658	17508071	59	+	.	ID=3359;Type=deletion;Left=chr12:17507658-17508071;Right=chr12:17508880-17509480
chr12	CG	SV	17508880	17509480	59	+	.	ID=3359;Type=deletion;Left=chr12:17507658-17508071;Right=chr12:17508880-17509480
chr12	CG	SV	23830789	23831918	79	.	.	ID=3356;Type=deletion;Left=chr12:23830789-23831311+;Right=chr12:23831356-23831918+;Distance=567;DiscordantMatePairAlignments=79;LeftRepeat=;RightRepeat=;LeftGenes=NM_006940:-;NM_152989:-;RightGenes=NM_006940:-;NM_152989:-;XRef=;Frequency=0.59
chr12	CG	SV	23830789	23831311	79	+	.	ID=3356;Type=deletion;Left=chr12:23830789-23831311;Right=chr12:23831356-23831918
chr12	CG	SV	23831356	23831918	79	+	.	ID=3356;Type=deletion;Left=chr12:23830789-23831311;Right=chr12:23831356-23831918
chr12	CG	SV	24832196	24833596	275	.	.	ID=3355;Type=deletion;Left=chr12:24832196-24832848+;Right=chr12:24832898-24833596+;Distance=702;DiscordantMatePairAlignments=275;LeftRepeat=LTR16A:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr12	CG	SV	24832196	24832848	275	+	.	ID=3355;Type=deletion;Left=chr12:24832196-24832848;Right=chr12:24832898-24833596
chr12	CG	SV	24832898	24833596	275	+	.	ID=3355;Type=deletion;Left=chr12:24832196-24832848;Right=chr12:24832898-24833596
chr12	CG	SV	25846801	124367728	49	.	.	ID=378;Type=complex;Left=chr12:25846801-25847393-;Right=chr12:124367100-124367728+;Distance=98519707;DiscordantMatePairAlignments=49;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	25846801	25847393	49	-	.	ID=378;Type=complex;Left=chr12:25846801-25847393;Right=chr12:124367100-124367728
chr12	CG	SV	124367100	124367728	49	-	.	ID=378;Type=complex;Left=chr12:25846801-25847393;Right=chr12:124367100-124367728
chr12	CG	SV	25846816	102883854	10	.	.	ID=1431;Type=complex;Left=chr12:25846816-25847407-;Right=chr12:102883758-102883854-;Distance=77036447;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_003211:+;XRef=;Frequency=0.53
chr12	CG	SV	25846816	25847407	10	-	.	ID=1431;Type=complex;Left=chr12:25846816-25847407;Right=chr12:102883758-102883854
chr12	CG	SV	102883758	102883854	10	-	.	ID=1431;Type=complex;Left=chr12:25846816-25847407;Right=chr12:102883758-102883854
chr12	CG	SV	26402304	26403534	16	.	.	ID=3354;Type=deletion;Left=chr12:26402304-26402921+;Right=chr12:26402636-26403534+;Distance=332;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=NM_002223:-;RightGenes=NM_002223:-;XRef=rs66549562 (chr12:26402287-26402619);Frequency=1.00
chr12	CG	SV	26402304	26402921	16	+	.	ID=3354;Type=deletion;Left=chr12:26402304-26402921;Right=chr12:26402636-26403534
chr12	CG	SV	26402636	26403534	16	+	.	ID=3354;Type=deletion;Left=chr12:26402304-26402921;Right=chr12:26402636-26403534
chr12	CG	SV	29052943	29056626	80	.	.	ID=3352;Type=deletion;Left=chr12:29052943-29053443+;Right=chr12:29056104-29056626+;Distance=3161;DiscordantMatePairAlignments=80;LeftRepeat=MLT1B:LTR:MaLR;RightRepeat=MER93B:LTR:ERV1;Tandem period 31;LeftGenes=;RightGenes=;XRef=rs66659443 (chr12:29052943-29056085);Frequency=0.15
chr12	CG	SV	29052943	29053443	80	+	.	ID=3352;Type=deletion;Left=chr12:29052943-29053443;Right=chr12:29056104-29056626
chr12	CG	SV	29056104	29056626	80	+	.	ID=3352;Type=deletion;Left=chr12:29052943-29053443;Right=chr12:29056104-29056626
chr12	CG	SV	30369554	30372918	107	.	.	ID=3349;Type=deletion;Left=chr12:30369554-30370249+;Right=chr12:30372260-30372918+;Distance=2706;DiscordantMatePairAlignments=107;LeftRepeat=LTR41:LTR:ERVL;Self chain;RightRepeat=MER52C:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs66727704 (chr12:30369554-30372260);Frequency=0.41
chr12	CG	SV	30369554	30370249	107	+	.	ID=3349;Type=deletion;Left=chr12:30369554-30370249;Right=chr12:30372260-30372918
chr12	CG	SV	30372260	30372918	107	+	.	ID=3349;Type=deletion;Left=chr12:30369554-30370249;Right=chr12:30372260-30372918
chr12	CG	SV	40524335	40525337	34	.	.	ID=3328;Type=deletion;Left=chr12:40524335-40524998+;Right=chr12:40525159-40525337+;Distance=824;DiscordantMatePairAlignments=34;LeftRepeat=L1HS:LINE:L1;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66498842 (chr12:40524320-40525144);Frequency=0.88
chr12	CG	SV	40524335	40524998	34	+	.	ID=3328;Type=deletion;Left=chr12:40524335-40524998;Right=chr12:40525159-40525337
chr12	CG	SV	40525159	40525337	34	+	.	ID=3328;Type=deletion;Left=chr12:40524335-40524998;Right=chr12:40525159-40525337
chr12	CG	SV	42263717	42266498	265	.	.	ID=3327;Type=deletion;Left=chr12:42263717-42264157+;Right=chr12:42265817-42266498+;Distance=2100;DiscordantMatePairAlignments=265;LeftRepeat=LTR52:LTR:ERVL;RightRepeat=LTR52:LTR:ERVL;LeftGenes=;RightGenes=;XRef=rs67022104 (chr12:42263727-42265827);Frequency=1.00
chr12	CG	SV	42263717	42264157	265	+	.	ID=3327;Type=deletion;Left=chr12:42263717-42264157;Right=chr12:42265817-42266498
chr12	CG	SV	42265817	42266498	265	+	.	ID=3327;Type=deletion;Left=chr12:42263717-42264157;Right=chr12:42265817-42266498
chr12	CG	SV	44189420	44196770	77	.	.	ID=3326;Type=deletion;Left=chr12:44189420-44189905+;Right=chr12:44196206-44196770+;Distance=6786;DiscordantMatePairAlignments=77;LeftRepeat=MSTD-int:LTR:MaLR;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72102706 (chr12:44189420-44196206);Frequency=0.76
chr12	CG	SV	44189420	44189905	77	+	.	ID=3326;Type=deletion;Left=chr12:44189420-44189905;Right=chr12:44196206-44196770
chr12	CG	SV	44196206	44196770	77	+	.	ID=3326;Type=deletion;Left=chr12:44189420-44189905;Right=chr12:44196206-44196770
chr12	CG	SV	45361633	45362606	11	.	.	ID=3325;Type=deletion;Left=chr12:45361633-45362223+;Right=chr12:45361981-45362606+;Distance=348;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs6144704 (chr12:45361633-45361981);Frequency=1.00
chr12	CG	SV	45361633	45362223	11	+	.	ID=3325;Type=deletion;Left=chr12:45361633-45362223;Right=chr12:45361981-45362606
chr12	CG	SV	45361981	45362606	11	+	.	ID=3325;Type=deletion;Left=chr12:45361633-45362223;Right=chr12:45361981-45362606
chr12	CG	SV	48468765	48469203	25	.	.	ID=5432;Type=distal-duplication;Left=chr12:48468765-48469229+;Right=chr12:48468904-48469203-;Distance=438;DiscordantMatePairAlignments=25;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr12	CG	SV	48468765	48469229	25	+	.	ID=5432;Type=distal-duplication;Left=chr12:48468765-48469229;Right=chr12:48468904-48469203
chr12	CG	SV	48468904	48469203	25	+	.	ID=5432;Type=distal-duplication;Left=chr12:48468765-48469229;Right=chr12:48468904-48469203
chr12	CG	SV	48468684	48469770	24	.	.	ID=390;Type=distal-duplication;Left=chr12:48468684-48468879-;Right=chr12:48469137-48469770+;Distance=258;DiscordantMatePairAlignments=24;LeftRepeat=AluYc5:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr12	CG	SV	48468684	48468879	24	-	.	ID=390;Type=distal-duplication;Left=chr12:48468684-48468879;Right=chr12:48469137-48469770
chr12	CG	SV	48469137	48469770	24	-	.	ID=390;Type=distal-duplication;Left=chr12:48468684-48468879;Right=chr12:48469137-48469770
chr12	CG	SV	54013476	54014884	30	.	.	ID=3323;Type=deletion;Left=chr12:54013476-54013967+;Right=chr12:54014449-54014884+;Distance=973;DiscordantMatePairAlignments=30;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71674010 (chr12:54013481-54014455);Frequency=0.47
chr12	CG	SV	54013476	54013967	30	+	.	ID=3323;Type=deletion;Left=chr12:54013476-54013967;Right=chr12:54014449-54014884
chr12	CG	SV	54014449	54014884	30	+	.	ID=3323;Type=deletion;Left=chr12:54013476-54013967;Right=chr12:54014449-54014884
chr12	CG	SV	58808112	58811883	127	.	.	ID=3318;Type=deletion;Left=chr12:58808112-58808592+;Right=chr12:58811308-58811883+;Distance=3196;DiscordantMatePairAlignments=127;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71042189 (chr12:58808112-58811308);Frequency=0.59
chr12	CG	SV	58808112	58808592	127	+	.	ID=3318;Type=deletion;Left=chr12:58808112-58808592;Right=chr12:58811308-58811883
chr12	CG	SV	58811308	58811883	127	+	.	ID=3318;Type=deletion;Left=chr12:58808112-58808592;Right=chr12:58811308-58811883
chr12	CG	SV	64813918	64816619	60	.	.	ID=3317;Type=deletion;Left=chr12:64813918-64814407+;Right=chr12:64816159-64816619+;Distance=2241;DiscordantMatePairAlignments=60;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67481727 (chr12:64813918-64816159);Frequency=0.41
chr12	CG	SV	64813918	64814407	60	+	.	ID=3317;Type=deletion;Left=chr12:64813918-64814407;Right=chr12:64816159-64816619
chr12	CG	SV	64816159	64816619	60	+	.	ID=3317;Type=deletion;Left=chr12:64813918-64814407;Right=chr12:64816159-64816619
chr12	CG	SV	66617867	66620972	100	.	.	ID=1436;Type=tandem-duplication;Left=chr12:66617867-66618500-;Right=chr12:66620410-66620972-;Distance=2472;DiscordantMatePairAlignments=100;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	66617867	66618500	100	-	.	ID=1436;Type=tandem-duplication;Left=chr12:66617867-66618500;Right=chr12:66620410-66620972
chr12	CG	SV	66620410	66620972	100	-	.	ID=1436;Type=tandem-duplication;Left=chr12:66617867-66618500;Right=chr12:66620410-66620972
chr12	CG	SV	67833088	117217343	35	.	.	ID=1418;Type=tandem-duplication;Left=chr12:67833088-67833642-;Right=chr12:117217006-117217343-;Distance=49383701;DiscordantMatePairAlignments=35;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=NM_016281:-;XRef=;Frequency=0.59
chr12	CG	SV	67833088	67833642	35	-	.	ID=1418;Type=tandem-duplication;Left=chr12:67833088-67833642;Right=chr12:117217006-117217343
chr12	CG	SV	117217006	117217343	35	-	.	ID=1418;Type=tandem-duplication;Left=chr12:67833088-67833642;Right=chr12:117217006-117217343
chr12	CG	SV	68881131	68884428	86	.	.	ID=3314;Type=deletion;Left=chr12:68881131-68881527+;Right=chr12:68883862-68884428+;Distance=2731;DiscordantMatePairAlignments=86;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67387579 (chr12:68881131-68883862);Frequency=0.88
chr12	CG	SV	68881131	68881527	86	+	.	ID=3314;Type=deletion;Left=chr12:68881131-68881527;Right=chr12:68883862-68884428
chr12	CG	SV	68883862	68884428	86	+	.	ID=3314;Type=deletion;Left=chr12:68881131-68881527;Right=chr12:68883862-68884428
chr12	CG	SV	69818584	69820528	96	.	.	ID=389;Type=distal-duplication;Left=chr12:69818584-69819060-;Right=chr12:69820021-69820528+;Distance=961;DiscordantMatePairAlignments=96;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_004616:-;RightGenes=NM_004616:-;XRef=;Frequency=0.65
chr12	CG	SV	69818584	69819060	96	-	.	ID=389;Type=distal-duplication;Left=chr12:69818584-69819060;Right=chr12:69820021-69820528
chr12	CG	SV	69820021	69820528	96	-	.	ID=389;Type=distal-duplication;Left=chr12:69818584-69819060;Right=chr12:69820021-69820528
chr12	CG	SV	69819545	69820019	80	.	.	ID=5431;Type=distal-duplication;Left=chr12:69819545-69820028+;Right=chr12:69819543-69820019-;Distance=474;DiscordantMatePairAlignments=80;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_004616:-;RightGenes=NM_004616:-;XRef=;Frequency=0.65
chr12	CG	SV	69819545	69820028	80	+	.	ID=5431;Type=distal-duplication;Left=chr12:69819545-69820028;Right=chr12:69819543-69820019
chr12	CG	SV	69819543	69820019	80	+	.	ID=5431;Type=distal-duplication;Left=chr12:69819545-69820028;Right=chr12:69819543-69820019
chr12	CG	SV	70642942	70644816	25	.	.	ID=3313;Type=deletion;Left=chr12:70642942-70643509+;Right=chr12:70644506-70644816+;Distance=1564;DiscordantMatePairAlignments=25;LeftRepeat=AluSg/x:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Tandem period 9;LeftGenes=NM_173353:+;RightGenes=NM_173353:+;XRef=rs72355357 (chr12:70642775-70644339);Frequency=1.00
chr12	CG	SV	70642942	70643509	25	+	.	ID=3313;Type=deletion;Left=chr12:70642942-70643509;Right=chr12:70644506-70644816
chr12	CG	SV	70644506	70644816	25	+	.	ID=3313;Type=deletion;Left=chr12:70642942-70643509;Right=chr12:70644506-70644816
chr12	CG	SV	76478897	76508897	65	.	.	ID=1435;Type=tandem-duplication;Left=chr12:76478897-76479343-;Right=chr12:76508372-76508897-;Distance=29554;DiscordantMatePairAlignments=65;LeftRepeat=L1M:LINE:L1;RightRepeat=MIRb:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr12	CG	SV	76478897	76479343	65	-	.	ID=1435;Type=tandem-duplication;Left=chr12:76478897-76479343;Right=chr12:76508372-76508897
chr12	CG	SV	76508372	76508897	65	-	.	ID=1435;Type=tandem-duplication;Left=chr12:76478897-76479343;Right=chr12:76508372-76508897
chr12	CG	SV	78678292	78686738	56	.	.	ID=1434;Type=tandem-duplication;Left=chr12:78678292-78678855-;Right=chr12:78686296-78686738-;Distance=7883;DiscordantMatePairAlignments=56;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr12	CG	SV	78678292	78678855	56	-	.	ID=1434;Type=tandem-duplication;Left=chr12:78678292-78678855;Right=chr12:78686296-78686738
chr12	CG	SV	78686296	78686738	56	-	.	ID=1434;Type=tandem-duplication;Left=chr12:78678292-78678855;Right=chr12:78686296-78686738
chr12	CG	SV	80663850	80668926	90	.	.	ID=3312;Type=deletion;Left=chr12:80663850-80664499+;Right=chr12:80668454-80668926+;Distance=4604;DiscordantMatePairAlignments=90;LeftRepeat=;RightRepeat=;LeftGenes=NM_003625:-;RightGenes=NM_003625:-;XRef=;Frequency=0.12
chr12	CG	SV	80663850	80664499	90	+	.	ID=3312;Type=deletion;Left=chr12:80663850-80664499;Right=chr12:80668454-80668926
chr12	CG	SV	80668454	80668926	90	+	.	ID=3312;Type=deletion;Left=chr12:80663850-80664499;Right=chr12:80668454-80668926
chr12	CG	SV	82368191	82369283	94	.	.	ID=3311;Type=deletion;Left=chr12:82368191-82368804+;Right=chr12:82368755-82369283+;Distance=564;DiscordantMatePairAlignments=94;LeftRepeat=L1M5:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66762260 (chr12:82368175-82368739);Frequency=0.82
chr12	CG	SV	82368191	82368804	94	+	.	ID=3311;Type=deletion;Left=chr12:82368191-82368804;Right=chr12:82368755-82369283
chr12	CG	SV	82368755	82369283	94	+	.	ID=3311;Type=deletion;Left=chr12:82368191-82368804;Right=chr12:82368755-82369283
chr12	CG	SV	83117245	83120674	53	.	.	ID=3310;Type=deletion;Left=chr12:83117245-83117755+;Right=chr12:83120148-83120674+;Distance=2903;DiscordantMatePairAlignments=53;LeftRepeat=;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72045293 (chr12:83117245-83120148);Frequency=0.71
chr12	CG	SV	83117245	83117755	53	+	.	ID=3310;Type=deletion;Left=chr12:83117245-83117755;Right=chr12:83120148-83120674
chr12	CG	SV	83120148	83120674	53	+	.	ID=3310;Type=deletion;Left=chr12:83117245-83117755;Right=chr12:83120148-83120674
chr12	CG	SV	85728920	85729969	36	.	.	ID=3309;Type=distal-duplication;Left=chr12:85728920-85729518+;Right=chr12:85729823-85729969+;Distance=903;DiscordantMatePairAlignments=36;LeftRepeat=L1MDb:LINE:L1;RightRepeat=L1MDb:LINE:L1;LeftGenes=NM_013244:-;RightGenes=NM_013244:-;XRef=;Frequency=0.88
chr12	CG	SV	85728920	85729518	36	+	.	ID=3309;Type=distal-duplication;Left=chr12:85728920-85729518;Right=chr12:85729823-85729969
chr12	CG	SV	85729823	85729969	36	+	.	ID=3309;Type=distal-duplication;Left=chr12:85728920-85729518;Right=chr12:85729823-85729969
chr12	CG	SV	85728461	85729948	17	.	.	ID=1433;Type=distal-duplication;Left=chr12:85728461-85728935-;Right=chr12:85729819-85729948-;Distance=1013;DiscordantMatePairAlignments=17;LeftRepeat=L1MDb:LINE:L1;RightRepeat=L1MDb:LINE:L1;LeftGenes=NM_013244:-;RightGenes=NM_013244:-;XRef=;Frequency=0.88
chr12	CG	SV	85728461	85728935	17	-	.	ID=1433;Type=distal-duplication;Left=chr12:85728461-85728935;Right=chr12:85729819-85729948
chr12	CG	SV	85729819	85729948	17	-	.	ID=1433;Type=distal-duplication;Left=chr12:85728461-85728935;Right=chr12:85729819-85729948
chr12	CG	SV	92028424	92030275	177	.	.	ID=3307;Type=deletion;Left=chr12:92028424-92029142+;Right=chr12:92029518-92030275+;Distance=1094;DiscordantMatePairAlignments=177;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72391384 (chr12:92028431-92029518);Frequency=0.06
chr12	CG	SV	92028424	92029142	177	+	.	ID=3307;Type=deletion;Left=chr12:92028424-92029142;Right=chr12:92029518-92030275
chr12	CG	SV	92029518	92030275	177	+	.	ID=3307;Type=deletion;Left=chr12:92028424-92029142;Right=chr12:92029518-92030275
chr12	CG	SV	92368418	92370673	149	.	.	ID=1432;Type=tandem-duplication;Left=chr12:92368418-92368863-;Right=chr12:92370097-92370673-;Distance=1810;DiscordantMatePairAlignments=149;LeftRepeat=AluJ/FLAM:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr12	CG	SV	92368418	92368863	149	-	.	ID=1432;Type=tandem-duplication;Left=chr12:92368418-92368863;Right=chr12:92370097-92370673
chr12	CG	SV	92370097	92370673	149	-	.	ID=1432;Type=tandem-duplication;Left=chr12:92368418-92368863;Right=chr12:92370097-92370673
chr12	CG	SV	93768157	93769073	24	.	.	ID=3306;Type=deletion;Left=chr12:93768157-93768802+;Right=chr12:93768580-93769073+;Distance=423;DiscordantMatePairAlignments=24;LeftRepeat=L1MA4A:LINE:L1;RightRepeat=MSTB1:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr12	CG	SV	93768157	93768802	24	+	.	ID=3306;Type=deletion;Left=chr12:93768157-93768802;Right=chr12:93768580-93769073
chr12	CG	SV	93768580	93769073	24	+	.	ID=3306;Type=deletion;Left=chr12:93768157-93768802;Right=chr12:93768580-93769073
chr12	CG	SV	94757723	94761083	66	.	.	ID=3305;Type=deletion;Left=chr12:94757723-94758379+;Right=chr12:94760469-94761083+;Distance=2746;DiscordantMatePairAlignments=66;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66521162 (chr12:94757723-94760469);Frequency=0.94
chr12	CG	SV	94757723	94758379	66	+	.	ID=3305;Type=deletion;Left=chr12:94757723-94758379;Right=chr12:94760469-94761083
chr12	CG	SV	94760469	94761083	66	+	.	ID=3305;Type=deletion;Left=chr12:94757723-94758379;Right=chr12:94760469-94761083
chr12	CG	SV	99859423	99859912	31	+	.	ID=5156;Type=complex;Left=chr12:99859423-99859912+;Right=chr22:27395476-27395889-;Distance=;DiscordantMatePairAlignments=31;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=;LeftGenes=NM_178826:+;RightGenes=NM_001145418:-;XRef=;Frequency=0.00
chr22	CG	SV	27395476	27395889	31	+	.	ID=5156;Type=complex;Left=chr12:99859423-99859912+;Right=chr22:27395476-27395889-;Distance=;DiscordantMatePairAlignments=31;LeftRepeat=L1ME3B:LINE:L1;RightRepeat=;LeftGenes=NM_178826:+;RightGenes=NM_001145418:-;XRef=;Frequency=0.00
chr12	CG	SV	100626541	100631766	49	.	.	ID=3303;Type=deletion;Left=chr12:100626541-100627082+;Right=chr12:100631221-100631766+;Distance=4680;DiscordantMatePairAlignments=49;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L1MEc:LINE:L1;LeftGenes=NM_020244:+;RightGenes=NM_020244:+;XRef=;Frequency=0.53
chr12	CG	SV	100626541	100627082	49	+	.	ID=3303;Type=deletion;Left=chr12:100626541-100627082;Right=chr12:100631221-100631766
chr12	CG	SV	100631221	100631766	49	+	.	ID=3303;Type=deletion;Left=chr12:100626541-100627082;Right=chr12:100631221-100631766
chr12	CG	SV	102883583	124367779	47	.	.	ID=375;Type=complex;Left=chr12:102883583-102883759-;Right=chr12:124367100-124367779+;Distance=21483341;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_003211:+;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	102883583	102883759	47	-	.	ID=375;Type=complex;Left=chr12:102883583-102883759;Right=chr12:124367100-124367779
chr12	CG	SV	124367100	124367779	47	-	.	ID=375;Type=complex;Left=chr12:102883583-102883759;Right=chr12:124367100-124367779
chr12	CG	SV	102897559	124367331	19	.	.	ID=374;Type=complex;Left=chr12:102897559-102897736-;Right=chr12:124367100-124367331+;Distance=21469364;DiscordantMatePairAlignments=19;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;LeftGenes=NM_003211:+;RightGenes=;XRef=;Frequency=0.12
chr12	CG	SV	102897559	102897736	19	-	.	ID=374;Type=complex;Left=chr12:102897559-102897736;Right=chr12:124367100-124367331
chr12	CG	SV	124367100	124367331	19	-	.	ID=374;Type=complex;Left=chr12:102897559-102897736;Right=chr12:124367100-124367331
chr12	CG	SV	104297655	104298535	11	.	.	ID=3297;Type=deletion;Left=chr12:104297655-104298280+;Right=chr12:104297979-104298535+;Distance=324;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs71843479 (chr12:104297644-104297968);Frequency=0.88
chr12	CG	SV	104297655	104298280	11	+	.	ID=3297;Type=deletion;Left=chr12:104297655-104298280;Right=chr12:104297979-104298535
chr12	CG	SV	104297979	104298535	11	+	.	ID=3297;Type=deletion;Left=chr12:104297655-104298280;Right=chr12:104297979-104298535
chr12	CG	SV	114561747	114564280	10	.	.	ID=1417;Type=distal-duplication;Left=chr12:114561747-114561828-;Right=chr12:114563738-114564280-;Distance=2452;DiscordantMatePairAlignments=10;LeftRepeat=;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr12	CG	SV	114561747	114561828	10	-	.	ID=1417;Type=distal-duplication;Left=chr12:114561747-114561828;Right=chr12:114563738-114564280
chr12	CG	SV	114563738	114564280	10	-	.	ID=1417;Type=distal-duplication;Left=chr12:114561747-114561828;Right=chr12:114563738-114564280
chr12	CG	SV	114561908	114565026	18	.	.	ID=3285;Type=distal-duplication;Left=chr12:114561908-114561992+;Right=chr12:114564288-114565026+;Distance=2380;DiscordantMatePairAlignments=18;LeftRepeat=;RightRepeat=L1MC1:LINE:L1;LeftGenes=;RightGenes=;XRef=rs67352178 (chr12:114561908-114564286);Frequency=0.53
chr12	CG	SV	114561908	114561992	18	+	.	ID=3285;Type=distal-duplication;Left=chr12:114561908-114561992;Right=chr12:114564288-114565026
chr12	CG	SV	114564288	114565026	18	+	.	ID=3285;Type=distal-duplication;Left=chr12:114561908-114561992;Right=chr12:114564288-114565026
chr12	CG	SV	121576304	121577344	10	.	.	ID=3283;Type=deletion;Left=chr12:121576304-121576719+;Right=chr12:121576633-121577344+;Distance=329;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_023012:-;NM_198261:-;NM_198262:-;RightGenes=NM_023012:-;NM_198261:-;NM_198262:-;XRef=rs10526242 (chr12:121576299-121576628);Frequency=0.82
chr12	CG	SV	121576304	121576719	10	+	.	ID=3283;Type=deletion;Left=chr12:121576304-121576719;Right=chr12:121576633-121577344
chr12	CG	SV	121576633	121577344	10	+	.	ID=3283;Type=deletion;Left=chr12:121576304-121576719;Right=chr12:121576633-121577344
chr12	CG	SV	123024520	123062586	29	.	.	ID=3279;Type=deletion;Left=chr12:123024520-123025346+;Right=chr12:123062043-123062586+;Distance=37523;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_152437:+;RightGenes=NM_152437:+;XRef=;Frequency=0.25
chr12	CG	SV	123024520	123025346	29	+	.	ID=3279;Type=deletion;Left=chr12:123024520-123025346;Right=chr12:123062043-123062586
chr12	CG	SV	123062043	123062586	29	+	.	ID=3279;Type=deletion;Left=chr12:123024520-123025346;Right=chr12:123062043-123062586
chr12	CG	SV	123675231	123904486	62	.	.	ID=1416;Type=tandem-duplication;Left=chr12:123675231-123675891-;Right=chr12:123904189-123904486-;Distance=228595;DiscordantMatePairAlignments=62;LeftRepeat=AluJo:SINE:Alu;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=NM_001082959:-;NM_005505:-;XRef=;Frequency=0.00
chr12	CG	SV	123675231	123675891	62	-	.	ID=1416;Type=tandem-duplication;Left=chr12:123675231-123675891;Right=chr12:123904189-123904486
chr12	CG	SV	123904189	123904486	62	-	.	ID=1416;Type=tandem-duplication;Left=chr12:123675231-123675891;Right=chr12:123904189-123904486
chr12	CG	SV	125349470	125356216	70	.	.	ID=3278;Type=deletion;Left=chr12:125349470-125350247+;Right=chr12:125355564-125356216+;Distance=6094;DiscordantMatePairAlignments=70;LeftRepeat=L1HS:LINE:L1;Self chain;Tandem T;RightRepeat=MSTB1:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr12	CG	SV	125349470	125350247	70	+	.	ID=3278;Type=deletion;Left=chr12:125349470-125350247;Right=chr12:125355564-125356216
chr12	CG	SV	125355564	125356216	70	+	.	ID=3278;Type=deletion;Left=chr12:125349470-125350247;Right=chr12:125355564-125356216
chr12	CG	SV	126957019	126957891	26	.	.	ID=5422;Type=probable-inversion;Left=chr12:126957019-126957640+;Right=chr12:126957133-126957891-;Distance=872;DiscordantMatePairAlignments=26;LeftRepeat=(TA)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=L1ME1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr12	CG	SV	126957019	126957640	26	+	.	ID=5422;Type=probable-inversion;Left=chr12:126957019-126957640;Right=chr12:126957133-126957891
chr12	CG	SV	126957133	126957891	26	+	.	ID=5422;Type=probable-inversion;Left=chr12:126957019-126957640;Right=chr12:126957133-126957891
chr12	CG	SV	127758617	127759362	20	.	.	ID=1414;Type=tandem-duplication;Left=chr12:127758617-127758948-;Right=chr12:127759198-127759362-;Distance=414;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;Tandem period 59;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr12	CG	SV	127758617	127758948	20	-	.	ID=1414;Type=tandem-duplication;Left=chr12:127758617-127758948;Right=chr12:127759198-127759362
chr12	CG	SV	127759198	127759362	20	-	.	ID=1414;Type=tandem-duplication;Left=chr12:127758617-127758948;Right=chr12:127759198-127759362
chr12	CG	SV	129932872	129933829	58	.	.	ID=3272;Type=deletion;Left=chr12:129932872-129933521+;Right=chr12:129933416-129933829+;Distance=544;DiscordantMatePairAlignments=58;LeftRepeat=Self chain;Tandem period 134;Tandem period 68;RightRepeat=Self chain;Tandem period 134;Tandem period 68;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr12	CG	SV	129932872	129933521	58	+	.	ID=3272;Type=deletion;Left=chr12:129932872-129933521;Right=chr12:129933416-129933829
chr12	CG	SV	129933416	129933829	58	+	.	ID=3272;Type=deletion;Left=chr12:129932872-129933521;Right=chr12:129933416-129933829
chr12	CG	SV	130417561	130418431	20	.	.	ID=3270;Type=deletion;Left=chr12:130417561-130418155+;Right=chr12:130417992-130418431+;Distance=431;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;Tandem period 54;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr12	CG	SV	130417561	130418155	20	+	.	ID=3270;Type=deletion;Left=chr12:130417561-130418155;Right=chr12:130417992-130418431
chr12	CG	SV	130417992	130418431	20	+	.	ID=3270;Type=deletion;Left=chr12:130417561-130418155;Right=chr12:130417992-130418431
chr12	CG	SV	131452469	131453367	14	.	.	ID=3266;Type=deletion;Left=chr12:131452469-131453050+;Right=chr12:131452823-131453367+;Distance=354;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 118;Tandem period 59;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr12	CG	SV	131452469	131453050	14	+	.	ID=3266;Type=deletion;Left=chr12:131452469-131453050;Right=chr12:131452823-131453367
chr12	CG	SV	131452823	131453367	14	+	.	ID=3266;Type=deletion;Left=chr12:131452469-131453050;Right=chr12:131452823-131453367
chr13	CG	SV	23620946	23645481	89	.	.	ID=3264;Type=deletion;Left=chr13:23620946-23621563+;Right=chr13:23644955-23645481+;Distance=24009;DiscordantMatePairAlignments=89;LeftRepeat=Self chain;RightRepeat=L1MD1:LINE:L1;Self chain;LeftGenes=;RightGenes=NM_001166271:+;NM_153023:+;XRef=;Frequency=0.00
chr13	CG	SV	23620946	23621563	89	+	.	ID=3264;Type=deletion;Left=chr13:23620946-23621563;Right=chr13:23644955-23645481
chr13	CG	SV	23644955	23645481	89	+	.	ID=3264;Type=deletion;Left=chr13:23620946-23621563;Right=chr13:23644955-23645481
chr13	CG	SV	25170862	25172758	72	.	.	ID=3262;Type=deletion;Left=chr13:25170862-25171541+;Right=chr13:25172085-25172758+;Distance=1223;DiscordantMatePairAlignments=72;LeftRepeat=;RightRepeat=;LeftGenes=NM_016529:+;RightGenes=NM_016529:+;XRef=;Frequency=0.00
chr13	CG	SV	25170862	25171541	72	+	.	ID=3262;Type=deletion;Left=chr13:25170862-25171541;Right=chr13:25172085-25172758
chr13	CG	SV	25172085	25172758	72	+	.	ID=3262;Type=deletion;Left=chr13:25170862-25171541;Right=chr13:25172085-25172758
chr13	CG	SV	25948044	25950700	13	.	.	ID=3261;Type=deletion;Left=chr13:25948044-25948327+;Right=chr13:25950189-25950700+;Distance=2145;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr13	CG	SV	25948044	25948327	13	+	.	ID=3261;Type=deletion;Left=chr13:25948044-25948327;Right=chr13:25950189-25950700
chr13	CG	SV	25950189	25950700	13	+	.	ID=3261;Type=deletion;Left=chr13:25948044-25948327;Right=chr13:25950189-25950700
chr13	CG	SV	26444474	26445687	10	.	.	ID=1412;Type=tandem-duplication;Left=chr13:26444474-26444939-;Right=chr13:26445531-26445687-;Distance=748;DiscordantMatePairAlignments=10;LeftRepeat=(CA)n:Simple_repeat:Simple_repeat;Tandem CA;Tandem period 9;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr13	CG	SV	26444474	26444939	10	-	.	ID=1412;Type=tandem-duplication;Left=chr13:26444474-26444939;Right=chr13:26445531-26445687
chr13	CG	SV	26445531	26445687	10	-	.	ID=1412;Type=tandem-duplication;Left=chr13:26444474-26444939;Right=chr13:26445531-26445687
chr13	CG	SV	27166143	27167621	20	.	.	ID=3257;Type=deletion;Left=chr13:27166143-27166587+;Right=chr13:27167052-27167621+;Distance=909;DiscordantMatePairAlignments=20;LeftRepeat=L1PA16:LINE:L1;RightRepeat=L1PA16:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr13	CG	SV	27166143	27166587	20	+	.	ID=3257;Type=deletion;Left=chr13:27166143-27166587;Right=chr13:27167052-27167621
chr13	CG	SV	27167052	27167621	20	+	.	ID=3257;Type=deletion;Left=chr13:27166143-27166587;Right=chr13:27167052-27167621
chr13	CG	SV	28852771	28853677	14	.	.	ID=3254;Type=deletion;Left=chr13:28852771-28853517+;Right=chr13:28853095-28853677+;Distance=324;DiscordantMatePairAlignments=14;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_001033602:+;RightGenes=NM_001033602:+;XRef=rs67907214 (chr13:28852757-28853081);Frequency=0.94
chr13	CG	SV	28852771	28853517	14	+	.	ID=3254;Type=deletion;Left=chr13:28852771-28853517;Right=chr13:28853095-28853677
chr13	CG	SV	28853095	28853677	14	+	.	ID=3254;Type=deletion;Left=chr13:28852771-28853517;Right=chr13:28853095-28853677
chr13	CG	SV	30094958	30096252	82	.	.	ID=3252;Type=deletion;Left=chr13:30094958-30095622+;Right=chr13:30095770-30096252+;Distance=812;DiscordantMatePairAlignments=82;LeftRepeat=;RightRepeat=MER21B:LTR:ERV1;LeftGenes=NM_005800:+;RightGenes=NM_005800:+;XRef=;Frequency=0.00
chr13	CG	SV	30094958	30095622	82	+	.	ID=3252;Type=deletion;Left=chr13:30094958-30095622;Right=chr13:30095770-30096252
chr13	CG	SV	30095770	30096252	82	+	.	ID=3252;Type=deletion;Left=chr13:30094958-30095622;Right=chr13:30095770-30096252
chr13	CG	SV	36312467	36313338	11	.	.	ID=3250;Type=deletion;Left=chr13:36312467-36313174+;Right=chr13:36312787-36313338+;Distance=320;DiscordantMatePairAlignments=11;LeftRepeat=LTR1:LTR:ERV1;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs71079183 (chr13:36312467-36312787);Frequency=1.00
chr13	CG	SV	36312467	36313174	11	+	.	ID=3250;Type=deletion;Left=chr13:36312467-36313174;Right=chr13:36312787-36313338
chr13	CG	SV	36312787	36313338	11	+	.	ID=3250;Type=deletion;Left=chr13:36312467-36313174;Right=chr13:36312787-36313338
chr13	CG	SV	36969943	36984053	35	.	.	ID=3249;Type=deletion;Left=chr13:36969943-36970504+;Right=chr13:36983580-36984053+;Distance=13637;DiscordantMatePairAlignments=35;LeftRepeat=AluSg/x:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr13	CG	SV	36969943	36970504	35	+	.	ID=3249;Type=deletion;Left=chr13:36969943-36970504;Right=chr13:36983580-36984053
chr13	CG	SV	36983580	36984053	35	+	.	ID=3249;Type=deletion;Left=chr13:36969943-36970504;Right=chr13:36983580-36984053
chr13	CG	SV	37955319	37958806	64	.	.	ID=3248;Type=deletion;Left=chr13:37955319-37955842+;Right=chr13:37958205-37958806+;Distance=2886;DiscordantMatePairAlignments=64;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71703188 (chr13:37955319-37958205);Frequency=0.94
chr13	CG	SV	37955319	37955842	64	+	.	ID=3248;Type=deletion;Left=chr13:37955319-37955842;Right=chr13:37958205-37958806
chr13	CG	SV	37958205	37958806	64	+	.	ID=3248;Type=deletion;Left=chr13:37955319-37955842;Right=chr13:37958205-37958806
chr13	CG	SV	41844875	41845652	104	.	.	ID=1411;Type=tandem-duplication;Left=chr13:41844875-41845268-;Right=chr13:41845265-41845652-;Distance=384;DiscordantMatePairAlignments=104;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr13	CG	SV	41844875	41845268	104	-	.	ID=1411;Type=tandem-duplication;Left=chr13:41844875-41845268;Right=chr13:41845265-41845652
chr13	CG	SV	41845265	41845652	104	-	.	ID=1411;Type=tandem-duplication;Left=chr13:41844875-41845268;Right=chr13:41845265-41845652
chr13	CG	SV	41951303	41952520	136	.	.	ID=3244;Type=deletion;Left=chr13:41951303-41951860+;Right=chr13:41951947-41952520+;Distance=644;DiscordantMatePairAlignments=136;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72375475 (chr13:41951191-41951835);Frequency=0.29
chr13	CG	SV	41951303	41951860	136	+	.	ID=3244;Type=deletion;Left=chr13:41951303-41951860;Right=chr13:41951947-41952520
chr13	CG	SV	41951947	41952520	136	+	.	ID=3244;Type=deletion;Left=chr13:41951303-41951860;Right=chr13:41951947-41952520
chr13	CG	SV	42437799	42440127	377	.	.	ID=3243;Type=deletion;Left=chr13:42437799-42438563+;Right=chr13:42439452-42440127+;Distance=1653;DiscordantMatePairAlignments=377;LeftRepeat=;RightRepeat=;LeftGenes=NM_001002264:-;NM_033255:-;RightGenes=NM_001002264:-;NM_033255:-;XRef=rs67713275 (chr13:42437794-42439447);Frequency=0.82
chr13	CG	SV	42437799	42438563	377	+	.	ID=3243;Type=deletion;Left=chr13:42437799-42438563;Right=chr13:42439452-42440127
chr13	CG	SV	42439452	42440127	377	+	.	ID=3243;Type=deletion;Left=chr13:42437799-42438563;Right=chr13:42439452-42440127
chr13	CG	SV	48431462	48434867	33	.	.	ID=3238;Type=deletion;Left=chr13:48431462-48432019+;Right=chr13:48434622-48434867+;Distance=3160;DiscordantMatePairAlignments=33;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr13	CG	SV	48431462	48432019	33	+	.	ID=3238;Type=deletion;Left=chr13:48431462-48432019;Right=chr13:48434622-48434867
chr13	CG	SV	48434622	48434867	33	+	.	ID=3238;Type=deletion;Left=chr13:48431462-48432019;Right=chr13:48434622-48434867
chr13	CG	SV	49967349	49973749	163	.	.	ID=3235;Type=deletion;Left=chr13:49967349-49967988+;Right=chr13:49973081-49973749+;Distance=5732;DiscordantMatePairAlignments=163;LeftRepeat=Self chain;RightRepeat=MSTB-int:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs67883993 (chr13:49967351-49973083);Frequency=0.94
chr13	CG	SV	49967349	49967988	163	+	.	ID=3235;Type=deletion;Left=chr13:49967349-49967988;Right=chr13:49973081-49973749
chr13	CG	SV	49973081	49973749	163	+	.	ID=3235;Type=deletion;Left=chr13:49967349-49967988;Right=chr13:49973081-49973749
chr13	CG	SV	60451037	60452364	44	.	.	ID=3230;Type=deletion;Left=chr13:60451037-60451525+;Right=chr13:60451869-60452364+;Distance=832;DiscordantMatePairAlignments=44;LeftRepeat=;RightRepeat=L1M3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr13	CG	SV	60451037	60451525	44	+	.	ID=3230;Type=deletion;Left=chr13:60451037-60451525;Right=chr13:60451869-60452364
chr13	CG	SV	60451869	60452364	44	+	.	ID=3230;Type=deletion;Left=chr13:60451037-60451525;Right=chr13:60451869-60452364
chr13	CG	SV	61213446	61221118	323	.	.	ID=372;Type=probable-inversion;Left=chr13:61213446-61214041-;Right=chr13:61220487-61221118+;Distance=6446;DiscordantMatePairAlignments=323;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	61213446	61214041	323	-	.	ID=372;Type=probable-inversion;Left=chr13:61213446-61214041;Right=chr13:61220487-61221118
chr13	CG	SV	61220487	61221118	323	-	.	ID=372;Type=probable-inversion;Left=chr13:61213446-61214041;Right=chr13:61220487-61221118
chr13	CG	SV	62503490	62504291	46	.	.	ID=371;Type=probable-inversion;Left=chr13:62503490-62503564-;Right=chr13:62503672-62504291+;Distance=108;DiscordantMatePairAlignments=46;LeftRepeat=L2:LINE:L2;SegDup;RightRepeat=L2:LINE:L2;SegDup;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	62503490	62503564	46	-	.	ID=371;Type=probable-inversion;Left=chr13:62503490-62503564;Right=chr13:62503672-62504291
chr13	CG	SV	62503672	62504291	46	-	.	ID=371;Type=probable-inversion;Left=chr13:62503490-62503564;Right=chr13:62503672-62504291
chr13	CG	SV	62847334	62847983	11	-	.	ID=161;Type=interchromosomal;Left=chr13:62847334-62847983-;Right=chr19:18924852-18925146+;Distance=;DiscordantMatePairAlignments=11;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	18924852	18925146	11	-	.	ID=161;Type=interchromosomal;Left=chr13:62847334-62847983-;Right=chr19:18924852-18925146+;Distance=;DiscordantMatePairAlignments=11;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	63310837	63312341	15	.	.	ID=3228;Type=deletion;Left=chr13:63310837-63311359+;Right=chr13:63311825-63312341+;Distance=988;DiscordantMatePairAlignments=15;LeftRepeat=SegDup;Self chain;Tandem period 79;Tandem period 80;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr13	CG	SV	63310837	63311359	15	+	.	ID=3228;Type=deletion;Left=chr13:63310837-63311359;Right=chr13:63311825-63312341
chr13	CG	SV	63311825	63312341	15	+	.	ID=3228;Type=deletion;Left=chr13:63310837-63311359;Right=chr13:63311825-63312341
chr13	CG	SV	66072778	66075971	265	.	.	ID=3226;Type=deletion;Left=chr13:66072778-66073380+;Right=chr13:66075420-66075971+;Distance=2642;DiscordantMatePairAlignments=265;LeftRepeat=;RightRepeat=;LeftGenes=NM_020403:-;NM_203487:-;RightGenes=NM_020403:-;NM_203487:-;XRef=;Frequency=0.53
chr13	CG	SV	66072778	66073380	265	+	.	ID=3226;Type=deletion;Left=chr13:66072778-66073380;Right=chr13:66075420-66075971
chr13	CG	SV	66075420	66075971	265	+	.	ID=3226;Type=deletion;Left=chr13:66072778-66073380;Right=chr13:66075420-66075971
chr13	CG	SV	67887094	67887752	153	+	.	ID=5243;Type=interchromosomal;Left=chr13:67887094-67887752+;Right=chr18:36916261-36916953-;Distance=;DiscordantMatePairAlignments=153;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	36916261	36916953	153	+	.	ID=5243;Type=interchromosomal;Left=chr13:67887094-67887752+;Right=chr18:36916261-36916953-;Distance=;DiscordantMatePairAlignments=153;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	72972922	72973888	25	.	.	ID=3219;Type=deletion;Left=chr13:72972922-72973527+;Right=chr13:72973250-72973888+;Distance=328;DiscordantMatePairAlignments=25;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10704972 (chr13:72972922-72973250);Frequency=0.94
chr13	CG	SV	72972922	72973527	25	+	.	ID=3219;Type=deletion;Left=chr13:72972922-72973527;Right=chr13:72973250-72973888
chr13	CG	SV	72973250	72973888	25	+	.	ID=3219;Type=deletion;Left=chr13:72972922-72973527;Right=chr13:72973250-72973888
chr13	CG	SV	73503518	73506266	57	.	.	ID=3218;Type=deletion;Left=chr13:73503518-73504103+;Right=chr13:73505572-73506266+;Distance=2054;DiscordantMatePairAlignments=57;LeftRepeat=;RightRepeat=MIRb:SINE:MIR;LeftGenes=NM_007249:-;RightGenes=NM_007249:-;XRef=;Frequency=0.00
chr13	CG	SV	73503518	73504103	57	+	.	ID=3218;Type=deletion;Left=chr13:73503518-73504103;Right=chr13:73505572-73506266
chr13	CG	SV	73505572	73506266	57	+	.	ID=3218;Type=deletion;Left=chr13:73503518-73504103;Right=chr13:73505572-73506266
chr13	CG	SV	77662970	77666455	400	.	.	ID=3217;Type=deletion;Left=chr13:77662970-77663725+;Right=chr13:77665838-77666455+;Distance=2868;DiscordantMatePairAlignments=400;LeftRepeat=MER21B:LTR:ERV1;RightRepeat=L1MEc:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr13	CG	SV	77662970	77663725	400	+	.	ID=3217;Type=deletion;Left=chr13:77662970-77663725;Right=chr13:77665838-77666455
chr13	CG	SV	77665838	77666455	400	+	.	ID=3217;Type=deletion;Left=chr13:77662970-77663725;Right=chr13:77665838-77666455
chr13	CG	SV	77895640	77897266	69	.	.	ID=3216;Type=deletion;Left=chr13:77895640-77896218+;Right=chr13:77896750-77897266+;Distance=1110;DiscordantMatePairAlignments=69;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71729399 (chr13:77895641-77896751);Frequency=0.53
chr13	CG	SV	77895640	77896218	69	+	.	ID=3216;Type=deletion;Left=chr13:77895640-77896218;Right=chr13:77896750-77897266
chr13	CG	SV	77896750	77897266	69	+	.	ID=3216;Type=deletion;Left=chr13:77895640-77896218;Right=chr13:77896750-77897266
chr13	CG	SV	80645256	80646196	13	.	.	ID=3213;Type=deletion;Left=chr13:80645256-80645935+;Right=chr13:80645584-80646196+;Distance=328;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67616974 (chr13:80645237-80645565);Frequency=0.94
chr13	CG	SV	80645256	80645935	13	+	.	ID=3213;Type=deletion;Left=chr13:80645256-80645935;Right=chr13:80645584-80646196
chr13	CG	SV	80645584	80646196	13	+	.	ID=3213;Type=deletion;Left=chr13:80645256-80645935;Right=chr13:80645584-80646196
chr13	CG	SV	81254873	81254960	32	.	.	ID=5418;Type=inversion;Left=chr13:81254873-81255449+;Right=chr13:81254878-81254960-;Distance=87;DiscordantMatePairAlignments=32;LeftRepeat=HERVL40:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	81254873	81255449	32	+	.	ID=5418;Type=inversion;Left=chr13:81254873-81255449;Right=chr13:81254878-81254960
chr13	CG	SV	81254878	81254960	32	+	.	ID=5418;Type=inversion;Left=chr13:81254873-81255449;Right=chr13:81254878-81254960
chr13	CG	SV	81254789	81255592	34	.	.	ID=370;Type=inversion;Left=chr13:81254789-81254877-;Right=chr13:81254977-81255592+;Distance=100;DiscordantMatePairAlignments=34;LeftRepeat=HERVL40:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	81254789	81254877	34	-	.	ID=370;Type=inversion;Left=chr13:81254789-81254877;Right=chr13:81254977-81255592
chr13	CG	SV	81254977	81255592	34	-	.	ID=370;Type=inversion;Left=chr13:81254789-81254877;Right=chr13:81254977-81255592
chr13	CG	SV	82063937	82070790	20	.	.	ID=3212;Type=deletion;Left=chr13:82063937-82064281+;Right=chr13:82070208-82070790+;Distance=6271;DiscordantMatePairAlignments=20;LeftRepeat=L1MA4A:LINE:L1;RightRepeat=MER67D:LTR:ERV1;LeftGenes=;RightGenes=;XRef=rs72197596 (chr13:82063937-82070208);Frequency=0.29
chr13	CG	SV	82063937	82064281	20	+	.	ID=3212;Type=deletion;Left=chr13:82063937-82064281;Right=chr13:82070208-82070790
chr13	CG	SV	82070208	82070790	20	+	.	ID=3212;Type=deletion;Left=chr13:82063937-82064281;Right=chr13:82070208-82070790
chr13	CG	SV	89660856	89663322	78	.	.	ID=3211;Type=deletion;Left=chr13:89660856-89661307+;Right=chr13:89662811-89663322+;Distance=1955;DiscordantMatePairAlignments=78;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr13	CG	SV	89660856	89661307	78	+	.	ID=3211;Type=deletion;Left=chr13:89660856-89661307;Right=chr13:89662811-89663322
chr13	CG	SV	89662811	89663322	78	+	.	ID=3211;Type=deletion;Left=chr13:89660856-89661307;Right=chr13:89662811-89663322
chr13	CG	SV	91740904	92563894	34	.	.	ID=3209;Type=deletion;Left=chr13:91740904-91741351+;Right=chr13:92563358-92563894+;Distance=822454;DiscordantMatePairAlignments=34;LeftRepeat=L1PB1:LINE:L1;RightRepeat=;LeftGenes=NM_004466:+;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	91740904	91741351	34	+	.	ID=3209;Type=deletion;Left=chr13:91740904-91741351;Right=chr13:92563358-92563894
chr13	CG	SV	92563358	92563894	34	+	.	ID=3209;Type=deletion;Left=chr13:91740904-91741351;Right=chr13:92563358-92563894
chr13	CG	SV	92042624	92044587	146	.	.	ID=3210;Type=deletion;Left=chr13:92042624-92043203+;Right=chr13:92044018-92044587+;Distance=1394;DiscordantMatePairAlignments=146;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_004466:+;RightGenes=NM_004466:+;XRef=;Frequency=0.00
chr13	CG	SV	92042624	92043203	146	+	.	ID=3210;Type=deletion;Left=chr13:92042624-92043203;Right=chr13:92044018-92044587
chr13	CG	SV	92044018	92044587	146	+	.	ID=3210;Type=deletion;Left=chr13:92042624-92043203;Right=chr13:92044018-92044587
chr13	CG	SV	92724372	92781859	13	.	.	ID=3208;Type=complex;Left=chr13:92724372-92724813+;Right=chr13:92781542-92781859+;Distance=57170;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=;LeftGenes=NM_005708:+;RightGenes=NM_005708:+;XRef=;Frequency=0.00
chr13	CG	SV	92724372	92724813	13	+	.	ID=3208;Type=complex;Left=chr13:92724372-92724813;Right=chr13:92781542-92781859
chr13	CG	SV	92781542	92781859	13	+	.	ID=3208;Type=complex;Left=chr13:92724372-92724813;Right=chr13:92781542-92781859
chr13	CG	SV	92780284	92782111	12	.	.	ID=369;Type=complex;Left=chr13:92780284-92780393-;Right=chr13:92781545-92782111+;Distance=1152;DiscordantMatePairAlignments=12;LeftRepeat=MER20B:DNA:MER1_type;RightRepeat=;LeftGenes=NM_005708:+;RightGenes=NM_005708:+;XRef=;Frequency=0.00
chr13	CG	SV	92780284	92780393	12	-	.	ID=369;Type=complex;Left=chr13:92780284-92780393;Right=chr13:92781545-92782111
chr13	CG	SV	92781545	92782111	12	-	.	ID=369;Type=complex;Left=chr13:92780284-92780393;Right=chr13:92781545-92782111
chr13	CG	SV	93255345	93632370	83	.	.	ID=3207;Type=deletion;Left=chr13:93255345-93255916+;Right=chr13:93631737-93632370+;Distance=376392;DiscordantMatePairAlignments=83;LeftRepeat=;RightRepeat=MIR3:SINE:MIR;LeftGenes=NM_005708:+;RightGenes=NM_005708:+;XRef=;Frequency=0.00
chr13	CG	SV	93255345	93255916	83	+	.	ID=3207;Type=deletion;Left=chr13:93255345-93255916;Right=chr13:93631737-93632370
chr13	CG	SV	93631737	93632370	83	+	.	ID=3207;Type=deletion;Left=chr13:93255345-93255916;Right=chr13:93631737-93632370
chr13	CG	SV	94244887	94286246	145	.	.	ID=5416;Type=probable-inversion;Left=chr13:94244887-94245613+;Right=chr13:94285549-94286246-;Distance=41359;DiscordantMatePairAlignments=145;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	94244887	94245613	145	+	.	ID=5416;Type=probable-inversion;Left=chr13:94244887-94245613;Right=chr13:94285549-94286246
chr13	CG	SV	94285549	94286246	145	+	.	ID=5416;Type=probable-inversion;Left=chr13:94244887-94245613;Right=chr13:94285549-94286246
chr13	CG	SV	96739659	96742820	33	.	.	ID=3205;Type=deletion;Left=chr13:96739659-96740103+;Right=chr13:96742213-96742820+;Distance=2554;DiscordantMatePairAlignments=33;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_144778:+;NM_207304:+;RightGenes=NM_144778:+;NM_207304:+;XRef=;Frequency=0.00
chr13	CG	SV	96739659	96740103	33	+	.	ID=3205;Type=deletion;Left=chr13:96739659-96740103;Right=chr13:96742213-96742820
chr13	CG	SV	96742213	96742820	33	+	.	ID=3205;Type=deletion;Left=chr13:96739659-96740103;Right=chr13:96742213-96742820
chr13	CG	SV	97302559	97303271	11	.	.	ID=1408;Type=tandem-duplication;Left=chr13:97302559-97302923-;Right=chr13:97303114-97303271-;Distance=348;DiscordantMatePairAlignments=11;LeftRepeat=;RightRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Tandem GATG;Tandem period 12;Tandem period 8;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr13	CG	SV	97302559	97302923	11	-	.	ID=1408;Type=tandem-duplication;Left=chr13:97302559-97302923;Right=chr13:97303114-97303271
chr13	CG	SV	97303114	97303271	11	-	.	ID=1408;Type=tandem-duplication;Left=chr13:97302559-97302923;Right=chr13:97303114-97303271
chr13	CG	SV	100692147	100695173	64	.	.	ID=3203;Type=deletion;Left=chr13:100692147-100692848+;Right=chr13:100694428-100695173+;Distance=2281;DiscordantMatePairAlignments=64;LeftRepeat=L1MEd:LINE:L1;RightRepeat=;LeftGenes=NM_052867:-;RightGenes=NM_052867:-;XRef=rs71085658 (chr13:100692147-100694428);Frequency=0.82
chr13	CG	SV	100692147	100692848	64	+	.	ID=3203;Type=deletion;Left=chr13:100692147-100692848;Right=chr13:100694428-100695173
chr13	CG	SV	100694428	100695173	64	+	.	ID=3203;Type=deletion;Left=chr13:100692147-100692848;Right=chr13:100694428-100695173
chr13	CG	SV	102889766	102890753	16	.	.	ID=3200;Type=deletion;Left=chr13:102889766-102890369+;Right=chr13:102890248-102890753+;Distance=482;DiscordantMatePairAlignments=16;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66819995 (chr13:102889765-102890247);Frequency=1.00
chr13	CG	SV	102889766	102890369	16	+	.	ID=3200;Type=deletion;Left=chr13:102889766-102890369;Right=chr13:102890248-102890753
chr13	CG	SV	102890248	102890753	16	+	.	ID=3200;Type=deletion;Left=chr13:102889766-102890369;Right=chr13:102890248-102890753
chr13	CG	SV	107745025	107750344	43	.	.	ID=3199;Type=deletion;Left=chr13:107745025-107745623+;Right=chr13:107749811-107750344+;Distance=4786;DiscordantMatePairAlignments=43;LeftRepeat=L1MB5:LINE:L1;RightRepeat=L1MB5:LINE:L1;LeftGenes=NM_001145645:+;NM_006573:+;RightGenes=NM_001145645:+;NM_006573:+;XRef=;Frequency=0.24
chr13	CG	SV	107745025	107745623	43	+	.	ID=3199;Type=deletion;Left=chr13:107745025-107745623;Right=chr13:107749811-107750344
chr13	CG	SV	107749811	107750344	43	+	.	ID=3199;Type=deletion;Left=chr13:107745025-107745623;Right=chr13:107749811-107750344
chr13	CG	SV	108159749	108160974	140	.	.	ID=3198;Type=deletion;Left=chr13:108159749-108160393+;Right=chr13:108160441-108160974+;Distance=692;DiscordantMatePairAlignments=140;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=NM_015011:+;RightGenes=NM_015011:+;XRef=;Frequency=0.53
chr13	CG	SV	108159749	108160393	140	+	.	ID=3198;Type=deletion;Left=chr13:108159749-108160393;Right=chr13:108160441-108160974
chr13	CG	SV	108160441	108160974	140	+	.	ID=3198;Type=deletion;Left=chr13:108159749-108160393;Right=chr13:108160441-108160974
chr13	CG	SV	109215883	109217550	28	.	.	ID=3197;Type=deletion;Left=chr13:109215883-109216283+;Right=chr13:109217157-109217550+;Distance=1274;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;Tandem period 49;RightRepeat=Self chain;LeftGenes=NM_003749:-;RightGenes=NM_003749:-;XRef=rs71685379 (chr13:109215747-109216776);Frequency=0.88
chr13	CG	SV	109215883	109216283	28	+	.	ID=3197;Type=deletion;Left=chr13:109215883-109216283;Right=chr13:109217157-109217550
chr13	CG	SV	109217157	109217550	28	+	.	ID=3197;Type=deletion;Left=chr13:109215883-109216283;Right=chr13:109217157-109217550
chr13	CG	SV	110502473	110503389	26	.	.	ID=3194;Type=deletion;Left=chr13:110502473-110503113+;Right=chr13:110502983-110503389+;Distance=510;DiscordantMatePairAlignments=26;LeftRepeat=Self chain;Tandem period 134;Tandem period 27;RightRepeat=MER39:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs71085666 (chr13:110502520-110502896);Frequency=0.94
chr13	CG	SV	110502473	110503113	26	+	.	ID=3194;Type=deletion;Left=chr13:110502473-110503113;Right=chr13:110502983-110503389
chr13	CG	SV	110502983	110503389	26	+	.	ID=3194;Type=deletion;Left=chr13:110502473-110503113;Right=chr13:110502983-110503389
chr13	CG	SV	112878690	112878858	10	.	.	ID=1406;Type=tandem-duplication;Left=chr13:112878690-112878765-;Right=chr13:112878760-112878858-;Distance=93;DiscordantMatePairAlignments=10;LeftRepeat=MLT1B:LTR:MaLR;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr13	CG	SV	112878690	112878765	10	-	.	ID=1406;Type=tandem-duplication;Left=chr13:112878690-112878765;Right=chr13:112878760-112878858
chr13	CG	SV	112878760	112878858	10	-	.	ID=1406;Type=tandem-duplication;Left=chr13:112878690-112878765;Right=chr13:112878760-112878858
chr14	CG	SV	21100028	21102010	63	.	.	ID=3189;Type=deletion;Left=chr14:21100028-21100720+;Right=chr14:21101674-21102010+;Distance=1646;DiscordantMatePairAlignments=63;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr14	CG	SV	21100028	21100720	63	+	.	ID=3189;Type=deletion;Left=chr14:21100028-21100720;Right=chr14:21101674-21102010
chr14	CG	SV	21101674	21102010	63	+	.	ID=3189;Type=deletion;Left=chr14:21100028-21100720;Right=chr14:21101674-21102010
chr14	CG	SV	21844675	21845831	56	.	.	ID=3188;Type=deletion;Left=chr14:21844675-21845300+;Right=chr14:21845208-21845831+;Distance=533;DiscordantMatePairAlignments=56;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=MLT1J:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=rs68048505 (chr14:21844675-21845208);Frequency=0.12
chr14	CG	SV	21844675	21845300	56	+	.	ID=3188;Type=deletion;Left=chr14:21844675-21845300;Right=chr14:21845208-21845831
chr14	CG	SV	21845208	21845831	56	+	.	ID=3188;Type=deletion;Left=chr14:21844675-21845300;Right=chr14:21845208-21845831
chr14	CG	SV	21951507	21952805	244	.	.	ID=3187;Type=deletion;Left=chr14:21951507-21952146+;Right=chr14:21952100-21952805+;Distance=593;DiscordantMatePairAlignments=244;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66716556 (chr14:21951506-21952099);Frequency=0.94
chr14	CG	SV	21951507	21952146	244	+	.	ID=3187;Type=deletion;Left=chr14:21951507-21952146;Right=chr14:21952100-21952805
chr14	CG	SV	21952100	21952805	244	+	.	ID=3187;Type=deletion;Left=chr14:21951507-21952146;Right=chr14:21952100-21952805
chr14	CG	SV	22122064	22123939	115	.	.	ID=3185;Type=deletion;Left=chr14:22122064-22122790+;Right=chr14:22123393-22123939+;Distance=1329;DiscordantMatePairAlignments=115;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_001344:-;RightGenes=NM_001344:-;XRef=;Frequency=0.00
chr14	CG	SV	22122064	22122790	115	+	.	ID=3185;Type=deletion;Left=chr14:22122064-22122790;Right=chr14:22123393-22123939
chr14	CG	SV	22123393	22123939	115	+	.	ID=3185;Type=deletion;Left=chr14:22122064-22122790;Right=chr14:22123393-22123939
chr14	CG	SV	22174955	22177911	36	.	.	ID=3184;Type=deletion;Left=chr14:22174955-22175467+;Right=chr14:22177790-22177911+;Distance=2835;DiscordantMatePairAlignments=36;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr14	CG	SV	22174955	22175467	36	+	.	ID=3184;Type=deletion;Left=chr14:22174955-22175467;Right=chr14:22177790-22177911
chr14	CG	SV	22177790	22177911	36	+	.	ID=3184;Type=deletion;Left=chr14:22174955-22175467;Right=chr14:22177790-22177911
chr14	CG	SV	25353716	25355071	44	.	.	ID=3179;Type=deletion;Left=chr14:25353716-25354316+;Right=chr14:25354642-25355071+;Distance=926;DiscordantMatePairAlignments=44;LeftRepeat=L1PA8:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr14	CG	SV	25353716	25354316	44	+	.	ID=3179;Type=deletion;Left=chr14:25353716-25354316;Right=chr14:25354642-25355071
chr14	CG	SV	25354642	25355071	44	+	.	ID=3179;Type=deletion;Left=chr14:25353716-25354316;Right=chr14:25354642-25355071
chr14	CG	SV	25660799	25662932	90	.	.	ID=3178;Type=deletion;Left=chr14:25660799-25661380+;Right=chr14:25662232-25662932+;Distance=1433;DiscordantMatePairAlignments=90;LeftRepeat=L3:LINE:CR1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr14	CG	SV	25660799	25661380	90	+	.	ID=3178;Type=deletion;Left=chr14:25660799-25661380;Right=chr14:25662232-25662932
chr14	CG	SV	25662232	25662932	90	+	.	ID=3178;Type=deletion;Left=chr14:25660799-25661380;Right=chr14:25662232-25662932
chr14	CG	SV	28797800	28799180	237	.	.	ID=3177;Type=deletion;Left=chr14:28797800-28798360+;Right=chr14:28798564-28799180+;Distance=764;DiscordantMatePairAlignments=237;LeftRepeat=;RightRepeat=L1MC3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr14	CG	SV	28797800	28798360	237	+	.	ID=3177;Type=deletion;Left=chr14:28797800-28798360;Right=chr14:28798564-28799180
chr14	CG	SV	28798564	28799180	237	+	.	ID=3177;Type=deletion;Left=chr14:28797800-28798360;Right=chr14:28798564-28799180
chr14	CG	SV	33359799	33360710	12	.	.	ID=3174;Type=deletion;Left=chr14:33359799-33360329+;Right=chr14:33360138-33360710+;Distance=339;DiscordantMatePairAlignments=12;LeftRepeat=AluYb9:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67229762 (chr14:33359799-33360138);Frequency=1.00
chr14	CG	SV	33359799	33360329	12	+	.	ID=3174;Type=deletion;Left=chr14:33359799-33360329;Right=chr14:33360138-33360710
chr14	CG	SV	33360138	33360710	12	+	.	ID=3174;Type=deletion;Left=chr14:33359799-33360329;Right=chr14:33360138-33360710
chr14	CG	SV	33583777	33585202	28	.	.	ID=3173;Type=deletion;Left=chr14:33583777-33584293+;Right=chr14:33584587-33585202+;Distance=810;DiscordantMatePairAlignments=28;LeftRepeat=HAL1:LINE:L1;RightRepeat=L1ME4a:LINE:L1;LeftGenes=;RightGenes=;XRef=rs72415809 (chr14:33583777-33584585);Frequency=0.35
chr14	CG	SV	33583777	33584293	28	+	.	ID=3173;Type=deletion;Left=chr14:33583777-33584293;Right=chr14:33584587-33585202
chr14	CG	SV	33584587	33585202	28	+	.	ID=3173;Type=deletion;Left=chr14:33583777-33584293;Right=chr14:33584587-33585202
chr14	CG	SV	39168142	39170422	109	.	.	ID=3170;Type=deletion;Left=chr14:39168142-39168786+;Right=chr14:39169964-39170422+;Distance=1822;DiscordantMatePairAlignments=109;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72037908 (chr14:39168142-39169964);Frequency=0.59
chr14	CG	SV	39168142	39168786	109	+	.	ID=3170;Type=deletion;Left=chr14:39168142-39168786;Right=chr14:39169964-39170422
chr14	CG	SV	39169964	39170422	109	+	.	ID=3170;Type=deletion;Left=chr14:39168142-39168786;Right=chr14:39169964-39170422
chr14	CG	SV	39679566	39688097	77	.	.	ID=3169;Type=deletion;Left=chr14:39679566-39680170+;Right=chr14:39687423-39688097+;Distance=7857;DiscordantMatePairAlignments=77;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr14	CG	SV	39679566	39680170	77	+	.	ID=3169;Type=deletion;Left=chr14:39679566-39680170;Right=chr14:39687423-39688097
chr14	CG	SV	39687423	39688097	77	+	.	ID=3169;Type=deletion;Left=chr14:39679566-39680170;Right=chr14:39687423-39688097
chr14	CG	SV	47393132	47395231	46	.	.	ID=365;Type=distal-duplication;Left=chr14:47393132-47393717-;Right=chr14:47395012-47395231+;Distance=1295;DiscordantMatePairAlignments=46;LeftRepeat=LTR33:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr14	CG	SV	47393132	47393717	46	-	.	ID=365;Type=distal-duplication;Left=chr14:47393132-47393717;Right=chr14:47395012-47395231
chr14	CG	SV	47395012	47395231	46	-	.	ID=365;Type=distal-duplication;Left=chr14:47393132-47393717;Right=chr14:47395012-47395231
chr14	CG	SV	47393721	47395230	40	.	.	ID=5414;Type=distal-duplication;Left=chr14:47393721-47394109+;Right=chr14:47395008-47395230-;Distance=1509;DiscordantMatePairAlignments=40;LeftRepeat=LTR33:LTR:ERVL;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr14	CG	SV	47393721	47394109	40	+	.	ID=5414;Type=distal-duplication;Left=chr14:47393721-47394109;Right=chr14:47395008-47395230
chr14	CG	SV	47395008	47395230	40	+	.	ID=5414;Type=distal-duplication;Left=chr14:47393721-47394109;Right=chr14:47395008-47395230
chr14	CG	SV	49261474	49262106	53	.	.	ID=1403;Type=tandem-duplication;Left=chr14:49261474-49261790-;Right=chr14:49261763-49262106-;Distance=316;DiscordantMatePairAlignments=53;LeftRepeat=L3:LINE:CR1;RightRepeat=;LeftGenes=NM_172193:+;RightGenes=NM_172193:+;XRef=;Frequency=1.00
chr14	CG	SV	49261474	49261790	53	-	.	ID=1403;Type=tandem-duplication;Left=chr14:49261474-49261790;Right=chr14:49261763-49262106
chr14	CG	SV	49261763	49262106	53	-	.	ID=1403;Type=tandem-duplication;Left=chr14:49261474-49261790;Right=chr14:49261763-49262106
chr14	CG	SV	51448094	51449255	165	.	.	ID=3163;Type=deletion;Left=chr14:51448094-51448817+;Right=chr14:51448653-51449255+;Distance=559;DiscordantMatePairAlignments=165;LeftRepeat=AluJo:SINE:Alu;RightRepeat=MIR:SINE:MIR;LeftGenes=NM_053064:+;RightGenes=NM_053064:+;XRef=rs72381763 (chr14:51448094-51448653);Frequency=0.12
chr14	CG	SV	51448094	51448817	165	+	.	ID=3163;Type=deletion;Left=chr14:51448094-51448817;Right=chr14:51448653-51449255
chr14	CG	SV	51448653	51449255	165	+	.	ID=3163;Type=deletion;Left=chr14:51448094-51448817;Right=chr14:51448653-51449255
chr14	CG	SV	53780099	53784020	94	.	.	ID=3160;Type=deletion;Left=chr14:53780099-53780656+;Right=chr14:53783438-53784020+;Distance=3339;DiscordantMatePairAlignments=94;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72416677 (chr14:53780099-53783437);Frequency=0.47
chr14	CG	SV	53780099	53780656	94	+	.	ID=3160;Type=deletion;Left=chr14:53780099-53780656;Right=chr14:53783438-53784020
chr14	CG	SV	53783438	53784020	94	+	.	ID=3160;Type=deletion;Left=chr14:53780099-53780656;Right=chr14:53783438-53784020
chr14	CG	SV	56100980	56101724	10	.	.	ID=3159;Type=deletion;Left=chr14:56100980-56101656+;Right=chr14:56101333-56101724+;Distance=353;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=L1MEd:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	56100980	56101656	10	+	.	ID=3159;Type=deletion;Left=chr14:56100980-56101656;Right=chr14:56101333-56101724
chr14	CG	SV	56101333	56101724	10	+	.	ID=3159;Type=deletion;Left=chr14:56100980-56101656;Right=chr14:56101333-56101724
chr14	CG	SV	59411151	59413512	26	.	.	ID=3157;Type=deletion;Left=chr14:59411151-59411745+;Right=chr14:59412995-59413512+;Distance=1844;DiscordantMatePairAlignments=26;LeftRepeat=L1MA3:LINE:L1;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr14	CG	SV	59411151	59411745	26	+	.	ID=3157;Type=deletion;Left=chr14:59411151-59411745;Right=chr14:59412995-59413512
chr14	CG	SV	59412995	59413512	26	+	.	ID=3157;Type=deletion;Left=chr14:59411151-59411745;Right=chr14:59412995-59413512
chr14	CG	SV	60669760	60675695	10	.	.	ID=3156;Type=deletion;Left=chr14:60669760-60670267+;Right=chr14:60675276-60675695+;Distance=5516;DiscordantMatePairAlignments=10;LeftRepeat=LTR7:LTR:ERV1;RightRepeat=LTR7:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr14	CG	SV	60669760	60670267	10	+	.	ID=3156;Type=deletion;Left=chr14:60669760-60670267;Right=chr14:60675276-60675695
chr14	CG	SV	60675276	60675695	10	+	.	ID=3156;Type=deletion;Left=chr14:60669760-60670267;Right=chr14:60675276-60675695
chr14	CG	SV	64358397	64359406	20	.	.	ID=364;Type=distal-duplication;Left=chr14:64358397-64358614-;Right=chr14:64358844-64359406+;Distance=230;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=(TC)n:Simple_repeat:Simple_repeat;LeftGenes=NM_000347:-;NM_001024858:-;RightGenes=NM_000347:-;NM_001024858:-;XRef=;Frequency=1.00
chr14	CG	SV	64358397	64358614	20	-	.	ID=364;Type=distal-duplication;Left=chr14:64358397-64358614;Right=chr14:64358844-64359406
chr14	CG	SV	64358844	64359406	20	-	.	ID=364;Type=distal-duplication;Left=chr14:64358397-64358614;Right=chr14:64358844-64359406
chr14	CG	SV	64358833	64358878	12	.	.	ID=5413;Type=distal-duplication;Left=chr14:64358833-64359381+;Right=chr14:64358769-64358878-;Distance=45;DiscordantMatePairAlignments=12;LeftRepeat=(TC)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=NM_000347:-;NM_001024858:-;RightGenes=NM_000347:-;NM_001024858:-;XRef=;Frequency=1.00
chr14	CG	SV	64358833	64359381	12	+	.	ID=5413;Type=distal-duplication;Left=chr14:64358833-64359381;Right=chr14:64358769-64358878
chr14	CG	SV	64358769	64358878	12	+	.	ID=5413;Type=distal-duplication;Left=chr14:64358833-64359381;Right=chr14:64358769-64358878
chr14	CG	SV	64430142	64433910	330	.	.	ID=3155;Type=deletion;Left=chr14:64430142-64430779+;Right=chr14:64433296-64433910+;Distance=3154;DiscordantMatePairAlignments=330;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66717779 (chr14:64430139-64433293);Frequency=1.00
chr14	CG	SV	64430142	64430779	330	+	.	ID=3155;Type=deletion;Left=chr14:64430142-64430779;Right=chr14:64433296-64433910
chr14	CG	SV	64433296	64433910	330	+	.	ID=3155;Type=deletion;Left=chr14:64430142-64430779;Right=chr14:64433296-64433910
chr14	CG	SV	65327931	65328142	10	.	.	ID=1402;Type=tandem-duplication;Left=chr14:65327931-65328048-;Right=chr14:65328041-65328142-;Distance=94;DiscordantMatePairAlignments=10;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;RightRepeat=(TG)n:Simple_repeat:Simple_repeat;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr14	CG	SV	65327931	65328048	10	-	.	ID=1402;Type=tandem-duplication;Left=chr14:65327931-65328048;Right=chr14:65328041-65328142
chr14	CG	SV	65328041	65328142	10	-	.	ID=1402;Type=tandem-duplication;Left=chr14:65327931-65328048;Right=chr14:65328041-65328142
chr14	CG	SV	66909183	66950565	51	.	.	ID=3154;Type=deletion;Left=chr14:66909183-66909749+;Right=chr14:66950119-66950565+;Distance=40936;DiscordantMatePairAlignments=51;LeftRepeat=AluSc:SINE:Alu;RightRepeat=;LeftGenes=NM_004094:+;RightGenes=;XRef=;Frequency=0.00
chr14	CG	SV	66909183	66909749	51	+	.	ID=3154;Type=deletion;Left=chr14:66909183-66909749;Right=chr14:66950119-66950565
chr14	CG	SV	66950119	66950565	51	+	.	ID=3154;Type=deletion;Left=chr14:66909183-66909749;Right=chr14:66950119-66950565
chr14	CG	SV	67672811	67674298	160	.	.	ID=3153;Type=deletion;Left=chr14:67672811-67673284+;Right=chr14:67673511-67674298+;Distance=700;DiscordantMatePairAlignments=160;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_002877:+;NM_133509:+;NM_133510:+;RightGenes=NM_002877:+;NM_133509:+;NM_133510:+;XRef=rs67710758 (chr14:67672811-67673511);Frequency=0.94
chr14	CG	SV	67672811	67673284	160	+	.	ID=3153;Type=deletion;Left=chr14:67672811-67673284;Right=chr14:67673511-67674298
chr14	CG	SV	67673511	67674298	160	+	.	ID=3153;Type=deletion;Left=chr14:67672811-67673284;Right=chr14:67673511-67674298
chr14	CG	SV	69757592	69759602	57	.	.	ID=3152;Type=deletion;Left=chr14:69757592-69758129+;Right=chr14:69759213-69759602+;Distance=1621;DiscordantMatePairAlignments=57;LeftRepeat=L1M:LINE:L1;Self chain;RightRepeat=MER53:DNA:DNA;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr14	CG	SV	69757592	69758129	57	+	.	ID=3152;Type=deletion;Left=chr14:69757592-69758129;Right=chr14:69759213-69759602
chr14	CG	SV	69759213	69759602	57	+	.	ID=3152;Type=deletion;Left=chr14:69757592-69758129;Right=chr14:69759213-69759602
chr14	CG	SV	75883527	75884651	68	.	.	ID=3142;Type=deletion;Left=chr14:75883527-75884125+;Right=chr14:75883962-75884651+;Distance=435;DiscordantMatePairAlignments=68;LeftRepeat=(TG)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66763096 (chr14:75883526-75883961);Frequency=0.59
chr14	CG	SV	75883527	75884125	68	+	.	ID=3142;Type=deletion;Left=chr14:75883527-75884125;Right=chr14:75883962-75884651
chr14	CG	SV	75883962	75884651	68	+	.	ID=3142;Type=deletion;Left=chr14:75883527-75884125;Right=chr14:75883962-75884651
chr14	CG	SV	77897998	77898955	10	.	.	ID=3141;Type=deletion;Left=chr14:77897998-77898678+;Right=chr14:77898349-77898955+;Distance=351;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71105289 (chr14:77897998-77898349);Frequency=1.00
chr14	CG	SV	77897998	77898678	10	+	.	ID=3141;Type=deletion;Left=chr14:77897998-77898678;Right=chr14:77898349-77898955
chr14	CG	SV	77898349	77898955	10	+	.	ID=3141;Type=deletion;Left=chr14:77897998-77898678;Right=chr14:77898349-77898955
chr14	CG	SV	79176043	79185452	97	.	.	ID=3140;Type=deletion;Left=chr14:79176043-79176564+;Right=chr14:79184804-79185452+;Distance=8761;DiscordantMatePairAlignments=97;LeftRepeat=;RightRepeat=;LeftGenes=NM_001105250:+;NM_004796:+;NM_138970:+;RightGenes=NM_001105250:+;NM_004796:+;NM_138970:+;XRef=rs6145406 (chr14:79176041-79184802);Frequency=0.53
chr14	CG	SV	79176043	79176564	97	+	.	ID=3140;Type=deletion;Left=chr14:79176043-79176564;Right=chr14:79184804-79185452
chr14	CG	SV	79184804	79185452	97	+	.	ID=3140;Type=deletion;Left=chr14:79176043-79176564;Right=chr14:79184804-79185452
chr14	CG	SV	81568863	81573582	52	.	.	ID=3138;Type=deletion;Left=chr14:81568863-81569324+;Right=chr14:81573083-81573582+;Distance=4220;DiscordantMatePairAlignments=52;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr14	CG	SV	81568863	81569324	52	+	.	ID=3138;Type=deletion;Left=chr14:81568863-81569324;Right=chr14:81573083-81573582
chr14	CG	SV	81573083	81573582	52	+	.	ID=3138;Type=deletion;Left=chr14:81568863-81569324;Right=chr14:81573083-81573582
chr14	CG	SV	82705603	82706938	148	.	.	ID=3136;Type=deletion;Left=chr14:82705603-82706232+;Right=chr14:82706250-82706938+;Distance=647;DiscordantMatePairAlignments=148;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67488723 (chr14:82705606-82706253);Frequency=0.94
chr14	CG	SV	82705603	82706232	148	+	.	ID=3136;Type=deletion;Left=chr14:82705603-82706232;Right=chr14:82706250-82706938
chr14	CG	SV	82706250	82706938	148	+	.	ID=3136;Type=deletion;Left=chr14:82705603-82706232;Right=chr14:82706250-82706938
chr14	CG	SV	84208899	84209991	37	.	.	ID=3135;Type=deletion;Left=chr14:84208899-84209483+;Right=chr14:84209379-84209991+;Distance=480;DiscordantMatePairAlignments=37;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72056555 (chr14:84208899-84209378);Frequency=0.65
chr14	CG	SV	84208899	84209483	37	+	.	ID=3135;Type=deletion;Left=chr14:84208899-84209483;Right=chr14:84209379-84209991
chr14	CG	SV	84209379	84209991	37	+	.	ID=3135;Type=deletion;Left=chr14:84208899-84209483;Right=chr14:84209379-84209991
chr14	CG	SV	86617154	86629211	86	.	.	ID=1392;Type=tandem-duplication;Left=chr14:86617154-86617680-;Right=chr14:86628588-86629211-;Distance=11531;DiscordantMatePairAlignments=86;LeftRepeat=;RightRepeat=MIR:SINE:MIR;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr14	CG	SV	86617154	86617680	86	-	.	ID=1392;Type=tandem-duplication;Left=chr14:86617154-86617680;Right=chr14:86628588-86629211
chr14	CG	SV	86628588	86629211	86	-	.	ID=1392;Type=tandem-duplication;Left=chr14:86617154-86617680;Right=chr14:86628588-86629211
chr14	CG	SV	92996054	92996159	29	.	.	ID=5406;Type=probable-inversion;Left=chr14:92996054-92996613+;Right=chr14:92996061-92996159-;Distance=105;DiscordantMatePairAlignments=29;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_020818:+;RightGenes=NM_020818:+;XRef=;Frequency=1.00
chr14	CG	SV	92996054	92996613	29	+	.	ID=5406;Type=probable-inversion;Left=chr14:92996054-92996613;Right=chr14:92996061-92996159
chr14	CG	SV	92996061	92996159	29	+	.	ID=5406;Type=probable-inversion;Left=chr14:92996054-92996613;Right=chr14:92996061-92996159
chr14	CG	SV	96245061	96245904	11	.	.	ID=3129;Type=deletion;Left=chr14:96245061-96245741+;Right=chr14:96245559-96245904+;Distance=498;DiscordantMatePairAlignments=11;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Tandem period 33;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr14	CG	SV	96245061	96245741	11	+	.	ID=3129;Type=deletion;Left=chr14:96245061-96245741;Right=chr14:96245559-96245904
chr14	CG	SV	96245559	96245904	11	+	.	ID=3129;Type=deletion;Left=chr14:96245061-96245741;Right=chr14:96245559-96245904
chr14	CG	SV	100062434	100063048	31	.	.	ID=1388;Type=tandem-duplication;Left=chr14:100062434-100062733-;Right=chr14:100062829-100063048-;Distance=315;DiscordantMatePairAlignments=31;LeftRepeat=(CCA)n:Simple_repeat:Simple_repeat;RightRepeat=(CACCAT)n:Simple_repeat:Simple_repeat;LeftGenes=NM_001161476:+;NM_024515:+;RightGenes=NM_001161476:+;NM_024515:+;XRef=;Frequency=1.00
chr14	CG	SV	100062434	100062733	31	-	.	ID=1388;Type=tandem-duplication;Left=chr14:100062434-100062733;Right=chr14:100062829-100063048
chr14	CG	SV	100062829	100063048	31	-	.	ID=1388;Type=tandem-duplication;Left=chr14:100062434-100062733;Right=chr14:100062829-100063048
chr14	CG	SV	103432415	103432876	89	.	.	ID=1387;Type=tandem-duplication;Left=chr14:103432415-103432642-;Right=chr14:103432676-103432876-;Distance=234;DiscordantMatePairAlignments=89;LeftRepeat=Self chain;Tandem period 33;RightRepeat=Tandem period 33;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	103432415	103432642	89	-	.	ID=1387;Type=tandem-duplication;Left=chr14:103432415-103432642;Right=chr14:103432676-103432876
chr14	CG	SV	103432676	103432876	89	-	.	ID=1387;Type=tandem-duplication;Left=chr14:103432415-103432642;Right=chr14:103432676-103432876
chr14	CG	SV	104345053	104346370	128	.	.	ID=3119;Type=deletion;Left=chr14:104345053-104345595+;Right=chr14:104345851-104346370+;Distance=798;DiscordantMatePairAlignments=128;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71803557 (chr14:104344945-104345705);Frequency=0.94
chr14	CG	SV	104345053	104345595	128	+	.	ID=3119;Type=deletion;Left=chr14:104345053-104345595;Right=chr14:104345851-104346370
chr14	CG	SV	104345851	104346370	128	+	.	ID=3119;Type=deletion;Left=chr14:104345053-104345595;Right=chr14:104345851-104346370
chr14	CG	SV	104699675	104700105	58	.	.	ID=1385;Type=tandem-duplication;Left=chr14:104699675-104699860-;Right=chr14:104699854-104700105-;Distance=245;DiscordantMatePairAlignments=58;LeftRepeat=Self chain;Tandem period 17;Tandem period 33;RightRepeat=Self chain;LeftGenes=NM_002226:-;NM_145159:-;RightGenes=NM_002226:-;NM_145159:-;XRef=;Frequency=0.65
chr14	CG	SV	104699675	104699860	58	-	.	ID=1385;Type=tandem-duplication;Left=chr14:104699675-104699860;Right=chr14:104699854-104700105
chr14	CG	SV	104699854	104700105	58	-	.	ID=1385;Type=tandem-duplication;Left=chr14:104699675-104699860;Right=chr14:104699854-104700105
chr14	CG	SV	105119957	105120343	17	.	.	ID=1383;Type=tandem-duplication;Left=chr14:105119957-105120083-;Right=chr14:105120155-105120343-;Distance=260;DiscordantMatePairAlignments=17;LeftRepeat=SegDup;Self chain;Tandem period 20;RightRepeat=SegDup;Self chain;Tandem period 20;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	105119957	105120083	17	-	.	ID=1383;Type=tandem-duplication;Left=chr14:105119957-105120083;Right=chr14:105120155-105120343
chr14	CG	SV	105120155	105120343	17	-	.	ID=1383;Type=tandem-duplication;Left=chr14:105119957-105120083;Right=chr14:105120155-105120343
chr14	CG	SV	106108642	106334538	29	.	.	ID=1377;Type=tandem-duplication;Left=chr14:106108642-106109115-;Right=chr14:106333971-106334538-;Distance=225423;DiscordantMatePairAlignments=29;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr14	CG	SV	106108642	106109115	29	-	.	ID=1377;Type=tandem-duplication;Left=chr14:106108642-106109115;Right=chr14:106333971-106334538
chr14	CG	SV	106333971	106334538	29	-	.	ID=1377;Type=tandem-duplication;Left=chr14:106108642-106109115;Right=chr14:106333971-106334538
chr14	CG	SV	106232608	106232836	99	.	.	ID=1380;Type=tandem-duplication;Left=chr14:106232608-106232718-;Right=chr14:106232717-106232836-;Distance=118;DiscordantMatePairAlignments=99;LeftRepeat=Self chain;Tandem period 59;RightRepeat=Self chain;Tandem period 59;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr14	CG	SV	106232608	106232718	99	-	.	ID=1380;Type=tandem-duplication;Left=chr14:106232608-106232718;Right=chr14:106232717-106232836
chr14	CG	SV	106232717	106232836	99	-	.	ID=1380;Type=tandem-duplication;Left=chr14:106232608-106232718;Right=chr14:106232717-106232836
chr15	CG	SV	19838217	19846059	15	.	.	ID=3112;Type=deletion;Left=chr15:19838217-19838732+;Right=chr15:19845457-19846059+;Distance=7240;DiscordantMatePairAlignments=15;LeftRepeat=L1PA16:LINE:L1;SegDup;Self chain;RightRepeat=SegDup;Self chain;Tandem period 18;LeftGenes=NR_015416:+;RightGenes=NR_015416:+;XRef=;Frequency=0.59
chr15	CG	SV	19838217	19838732	15	+	.	ID=3112;Type=deletion;Left=chr15:19838217-19838732;Right=chr15:19845457-19846059
chr15	CG	SV	19845457	19846059	15	+	.	ID=3112;Type=deletion;Left=chr15:19838217-19838732;Right=chr15:19845457-19846059
chr15	CG	SV	22884280	22885831	14	.	.	ID=3109;Type=deletion;Left=chr15:22884280-22884803+;Right=chr15:22885422-22885831+;Distance=1142;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr15	CG	SV	22884280	22884803	14	+	.	ID=3109;Type=deletion;Left=chr15:22884280-22884803;Right=chr15:22885422-22885831
chr15	CG	SV	22885422	22885831	14	+	.	ID=3109;Type=deletion;Left=chr15:22884280-22884803;Right=chr15:22885422-22885831
chr15	CG	SV	27198774	27199874	42	.	.	ID=3108;Type=deletion;Left=chr15:27198774-27199391+;Right=chr15:27199196-27199874+;Distance=422;DiscordantMatePairAlignments=42;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=L1MEc:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs67495753 (chr15:27198766-27199188);Frequency=1.00
chr15	CG	SV	27198774	27199391	42	+	.	ID=3108;Type=deletion;Left=chr15:27198774-27199391;Right=chr15:27199196-27199874
chr15	CG	SV	27199196	27199874	42	+	.	ID=3108;Type=deletion;Left=chr15:27198774-27199391;Right=chr15:27199196-27199874
chr15	CG	SV	32796325	32797387	12	.	.	ID=3106;Type=deletion;Left=chr15:32796325-32797107+;Right=chr15:32796660-32797387+;Distance=335;DiscordantMatePairAlignments=12;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71114022 (chr15:32796325-32796660);Frequency=1.00
chr15	CG	SV	32796325	32797107	12	+	.	ID=3106;Type=deletion;Left=chr15:32796325-32797107;Right=chr15:32796660-32797387
chr15	CG	SV	32796660	32797387	12	+	.	ID=3106;Type=deletion;Left=chr15:32796325-32797107;Right=chr15:32796660-32797387
chr15	CG	SV	33318542	33323527	21	.	.	ID=3105;Type=deletion;Left=chr15:33318542-33319190+;Right=chr15:33323317-33323527+;Distance=4775;DiscordantMatePairAlignments=21;LeftRepeat=LTR7Y:LTR:ERV1;RightRepeat=LTR7Y:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr15	CG	SV	33318542	33319190	21	+	.	ID=3105;Type=deletion;Left=chr15:33318542-33319190;Right=chr15:33323317-33323527
chr15	CG	SV	33323317	33323527	21	+	.	ID=3105;Type=deletion;Left=chr15:33318542-33319190;Right=chr15:33323317-33323527
chr15	CG	SV	37054308	37055098	10	.	.	ID=3104;Type=deletion;Left=chr15:37054308-37054933+;Right=chr15:37054662-37055098+;Distance=354;DiscordantMatePairAlignments=10;LeftRepeat=(TTA)n:Simple_repeat:Simple_repeat;Tandem TTA;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr15	CG	SV	37054308	37054933	10	+	.	ID=3104;Type=deletion;Left=chr15:37054308-37054933;Right=chr15:37054662-37055098
chr15	CG	SV	37054662	37055098	10	+	.	ID=3104;Type=deletion;Left=chr15:37054308-37054933;Right=chr15:37054662-37055098
chr15	CG	SV	38609284	38611442	107	.	.	ID=3102;Type=deletion;Left=chr15:38609284-38609892+;Right=chr15:38610945-38611442+;Distance=1661;DiscordantMatePairAlignments=107;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr15	CG	SV	38609284	38609892	107	+	.	ID=3102;Type=deletion;Left=chr15:38609284-38609892;Right=chr15:38610945-38611442
chr15	CG	SV	38610945	38611442	107	+	.	ID=3102;Type=deletion;Left=chr15:38609284-38609892;Right=chr15:38610945-38611442
chr15	CG	SV	39653307	39657995	43	.	.	ID=3089;Type=deletion;Left=chr15:39653307-39654130+;Right=chr15:39657377-39657995+;Distance=4070;DiscordantMatePairAlignments=43;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_006293:+;RightGenes=NM_006293:+;XRef=rs71638058 (chr15:39653305-39657375);Frequency=0.24
chr15	CG	SV	39653307	39654130	43	+	.	ID=3089;Type=deletion;Left=chr15:39653307-39654130;Right=chr15:39657377-39657995
chr15	CG	SV	39657377	39657995	43	+	.	ID=3089;Type=deletion;Left=chr15:39653307-39654130;Right=chr15:39657377-39657995
chr15	CG	SV	41447733	41448768	15	.	.	ID=3086;Type=deletion;Left=chr15:41447733-41448306+;Right=chr15:41448059-41448768+;Distance=326;DiscordantMatePairAlignments=15;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_152455:-;RightGenes=NM_152455:-;XRef=rs10705561 (chr15:41447733-41448059);Frequency=0.88
chr15	CG	SV	41447733	41448306	15	+	.	ID=3086;Type=deletion;Left=chr15:41447733-41448306;Right=chr15:41448059-41448768
chr15	CG	SV	41448059	41448768	15	+	.	ID=3086;Type=deletion;Left=chr15:41447733-41448306;Right=chr15:41448059-41448768
chr15	CG	SV	53005522	53012318	69	.	.	ID=3081;Type=deletion;Left=chr15:53005522-53006056+;Right=chr15:53011731-53012318+;Distance=6209;DiscordantMatePairAlignments=69;LeftRepeat=L1M1:LINE:L1;Tandem T;RightRepeat=L1M3c:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71114035 (chr15:53005522-53011731);Frequency=1.00
chr15	CG	SV	53005522	53006056	69	+	.	ID=3081;Type=deletion;Left=chr15:53005522-53006056;Right=chr15:53011731-53012318
chr15	CG	SV	53011731	53012318	69	+	.	ID=3081;Type=deletion;Left=chr15:53005522-53006056;Right=chr15:53011731-53012318
chr15	CG	SV	57500190	57501324	14	.	.	ID=3078;Type=deletion;Left=chr15:57500190-57500755+;Right=chr15:57500521-57501324+;Distance=331;DiscordantMatePairAlignments=14;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67321160 (chr15:57500178-57500509);Frequency=1.00
chr15	CG	SV	57500190	57500755	14	+	.	ID=3078;Type=deletion;Left=chr15:57500190-57500755;Right=chr15:57500521-57501324
chr15	CG	SV	57500521	57501324	14	+	.	ID=3078;Type=deletion;Left=chr15:57500190-57500755;Right=chr15:57500521-57501324
chr15	CG	SV	65191558	65193056	25	.	.	ID=3074;Type=deletion;Left=chr15:65191558-65191906+;Right=chr15:65192486-65193056+;Distance=928;DiscordantMatePairAlignments=25;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_005902:+;RightGenes=NM_005902:+;XRef=;Frequency=0.18
chr15	CG	SV	65191558	65191906	25	+	.	ID=3074;Type=deletion;Left=chr15:65191558-65191906;Right=chr15:65192486-65193056
chr15	CG	SV	65192486	65193056	25	+	.	ID=3074;Type=deletion;Left=chr15:65191558-65191906;Right=chr15:65192486-65193056
chr15	CG	SV	66213067	66216634	259	.	.	ID=3072;Type=deletion;Left=chr15:66213067-66213666+;Right=chr15:66215992-66216634+;Distance=2925;DiscordantMatePairAlignments=259;LeftRepeat=(TTTTTA)n:Simple_repeat:Simple_repeat;Self chain;Tandem ATTTTT;RightRepeat=Self chain;LeftGenes=NM_016166:+;RightGenes=NM_016166:+;XRef=rs67082670 (chr15:66213074-66215999);Frequency=1.00
chr15	CG	SV	66213067	66213666	259	+	.	ID=3072;Type=deletion;Left=chr15:66213067-66213666;Right=chr15:66215992-66216634
chr15	CG	SV	66215992	66216634	259	+	.	ID=3072;Type=deletion;Left=chr15:66213067-66213666;Right=chr15:66215992-66216634
chr15	CG	SV	69495663	69501338	27	.	.	ID=3070;Type=deletion;Left=chr15:69495663-69496166+;Right=chr15:69500744-69501338+;Distance=5081;DiscordantMatePairAlignments=27;LeftRepeat=L1MA2:LINE:L1;Self chain;RightRepeat=L1M1:LINE:L1;Self chain;LeftGenes=NM_024817:+;RightGenes=NM_024817:+;XRef=;Frequency=0.47
chr15	CG	SV	69495663	69496166	27	+	.	ID=3070;Type=deletion;Left=chr15:69495663-69496166;Right=chr15:69500744-69501338
chr15	CG	SV	69500744	69501338	27	+	.	ID=3070;Type=deletion;Left=chr15:69495663-69496166;Right=chr15:69500744-69501338
chr15	CG	SV	69804361	69805207	12	.	.	ID=3068;Type=deletion;Left=chr15:69804361-69804737+;Right=chr15:69804721-69805207+;Distance=360;DiscordantMatePairAlignments=12;LeftRepeat=L2:LINE:L2;Self chain;Tandem period 180;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_024817:+;RightGenes=NM_024817:+;XRef=rs71114044 (chr15:69804361-69804721);Frequency=1.00
chr15	CG	SV	69804361	69804737	12	+	.	ID=3068;Type=deletion;Left=chr15:69804361-69804737;Right=chr15:69804721-69805207
chr15	CG	SV	69804721	69805207	12	+	.	ID=3068;Type=deletion;Left=chr15:69804361-69804737;Right=chr15:69804721-69805207
chr15	CG	SV	70173114	70175860	29	.	.	ID=3067;Type=deletion;Left=chr15:70173114-70173691+;Right=chr15:70175307-70175860+;Distance=2193;DiscordantMatePairAlignments=29;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_006901:-;RightGenes=NM_006901:-;XRef=;Frequency=0.82
chr15	CG	SV	70173114	70173691	29	+	.	ID=3067;Type=deletion;Left=chr15:70173114-70173691;Right=chr15:70175307-70175860
chr15	CG	SV	70175307	70175860	29	+	.	ID=3067;Type=deletion;Left=chr15:70173114-70173691;Right=chr15:70175307-70175860
chr15	CG	SV	75697927	75698917	29	.	.	ID=3062;Type=deletion;Left=chr15:75697927-75698676+;Right=chr15:75698301-75698917+;Distance=374;DiscordantMatePairAlignments=29;LeftRepeat=AluYa5:SINE:Alu;Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_032808:-;RightGenes=NM_032808:-;XRef=rs35529068 (chr15:75697916-75698290);Frequency=1.00
chr15	CG	SV	75697927	75698676	29	+	.	ID=3062;Type=deletion;Left=chr15:75697927-75698676;Right=chr15:75698301-75698917
chr15	CG	SV	75698301	75698917	29	+	.	ID=3062;Type=deletion;Left=chr15:75697927-75698676;Right=chr15:75698301-75698917
chr15	CG	SV	75778391	75779143	17	.	.	ID=1374;Type=tandem-duplication;Left=chr15:75778391-75778706-;Right=chr15:75778854-75779143-;Distance=437;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;Tandem period 31;Tandem period 64;RightRepeat=Self chain;Tandem period 31;Tandem period 64;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr15	CG	SV	75778391	75778706	17	-	.	ID=1374;Type=tandem-duplication;Left=chr15:75778391-75778706;Right=chr15:75778854-75779143
chr15	CG	SV	75778854	75779143	17	-	.	ID=1374;Type=tandem-duplication;Left=chr15:75778391-75778706;Right=chr15:75778854-75779143
chr15	CG	SV	77592033	77592721	13	.	.	ID=3061;Type=deletion;Left=chr15:77592033-77592793+;Right=chr15:77592392-77592721+;Distance=359;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 359;RightRepeat=Self chain;Tandem period 359;LeftGenes=;RightGenes=;XRef=rs6145645 (chr15:77591688-77592047);Frequency=0.76
chr15	CG	SV	77592033	77592793	13	+	.	ID=3061;Type=deletion;Left=chr15:77592033-77592793;Right=chr15:77592392-77592721
chr15	CG	SV	77592392	77592721	13	+	.	ID=3061;Type=deletion;Left=chr15:77592033-77592793;Right=chr15:77592392-77592721
chr15	CG	SV	77678911	77679612	10	.	.	ID=3059;Type=deletion;Left=chr15:77678911-77679614+;Right=chr15:77679232-77679612+;Distance=321;DiscordantMatePairAlignments=10;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr15	CG	SV	77678911	77679614	10	+	.	ID=3059;Type=deletion;Left=chr15:77678911-77679614;Right=chr15:77679232-77679612
chr15	CG	SV	77679232	77679612	10	+	.	ID=3059;Type=deletion;Left=chr15:77678911-77679614;Right=chr15:77679232-77679612
chr15	CG	SV	85501099	85502064	28	.	.	ID=3056;Type=deletion;Left=chr15:85501099-85501605+;Right=chr15:85501582-85502064+;Distance=483;DiscordantMatePairAlignments=28;LeftRepeat=(TTCC)n:Simple_repeat:Simple_repeat;Tandem TTCC;Tandem period 28;Tandem period 43;Tandem period 71;RightRepeat=CT-rich:Low_complexity:Low_complexity;Tandem period 28;LeftGenes=;RightGenes=;XRef=rs67982659 (chr15:85501027-85501436);Frequency=0.71
chr15	CG	SV	85501099	85501605	28	+	.	ID=3056;Type=deletion;Left=chr15:85501099-85501605;Right=chr15:85501582-85502064
chr15	CG	SV	85501582	85502064	28	+	.	ID=3056;Type=deletion;Left=chr15:85501099-85501605;Right=chr15:85501582-85502064
chr15	CG	SV	89782584	89790574	40	.	.	ID=3050;Type=deletion;Left=chr15:89782584-89783265+;Right=chr15:89790272-89790574+;Distance=7688;DiscordantMatePairAlignments=40;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr15	CG	SV	89782584	89783265	40	+	.	ID=3050;Type=deletion;Left=chr15:89782584-89783265;Right=chr15:89790272-89790574
chr15	CG	SV	89790272	89790574	40	+	.	ID=3050;Type=deletion;Left=chr15:89782584-89783265;Right=chr15:89790272-89790574
chr15	CG	SV	96717592	96718744	56	.	.	ID=3045;Type=deletion;Left=chr15:96717592-96717951+;Right=chr15:96718158-96718744+;Distance=566;DiscordantMatePairAlignments=56;LeftRepeat=L1MC:LINE:L1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67424211 (chr15:96717594-96718160);Frequency=0.71
chr15	CG	SV	96717592	96717951	56	+	.	ID=3045;Type=deletion;Left=chr15:96717592-96717951;Right=chr15:96718158-96718744
chr15	CG	SV	96718158	96718744	56	+	.	ID=3045;Type=deletion;Left=chr15:96717592-96717951;Right=chr15:96718158-96718744
chr15	CG	SV	97392213	97393596	27	.	.	ID=3042;Type=deletion;Left=chr15:97392213-97392814+;Right=chr15:97393338-97393596+;Distance=1125;DiscordantMatePairAlignments=27;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71114057 (chr15:97392034-97393161);Frequency=0.59
chr15	CG	SV	97392213	97392814	27	+	.	ID=3042;Type=deletion;Left=chr15:97392213-97392814;Right=chr15:97393338-97393596
chr15	CG	SV	97393338	97393596	27	+	.	ID=3042;Type=deletion;Left=chr15:97392213-97392814;Right=chr15:97393338-97393596
chr15	CG	SV	98869290	98870293	23	.	.	ID=3040;Type=deletion;Left=chr15:98869290-98869872+;Right=chr15:98869855-98870293+;Distance=565;DiscordantMatePairAlignments=23;LeftRepeat=Self chain;Tandem period 63;RightRepeat=Self chain;LeftGenes=NM_178842:-;RightGenes=NM_178842:-;XRef=rs72451132 (chr15:98869262-98869701);Frequency=1.00
chr15	CG	SV	98869290	98869872	23	+	.	ID=3040;Type=deletion;Left=chr15:98869290-98869872;Right=chr15:98869855-98870293
chr15	CG	SV	98869855	98870293	23	+	.	ID=3040;Type=deletion;Left=chr15:98869290-98869872;Right=chr15:98869855-98870293
chr15	CG	SV	99067933	99068267	10	.	.	ID=1371;Type=tandem-duplication;Left=chr15:99067933-99068084-;Right=chr15:99068090-99068267-;Distance=183;DiscordantMatePairAlignments=10;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem TGGAGG;Tandem period 30;RightRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr15	CG	SV	99067933	99068084	10	-	.	ID=1371;Type=tandem-duplication;Left=chr15:99067933-99068084;Right=chr15:99068090-99068267
chr15	CG	SV	99068090	99068267	10	-	.	ID=1371;Type=tandem-duplication;Left=chr15:99067933-99068084;Right=chr15:99068090-99068267
chr15	CG	SV	99844049	100131539	122	.	.	ID=1370;Type=tandem-duplication;Left=chr15:99844049-99844519-;Right=chr15:100130865-100131539-;Distance=287020;DiscordantMatePairAlignments=122;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=NM_002570:-;NM_138319:-;NM_138320:-;NM_138321:-;NM_138322:-;NM_138323:-;NM_138324:-;NM_138325:-;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	99844049	99844519	122	-	.	ID=1370;Type=tandem-duplication;Left=chr15:99844049-99844519;Right=chr15:100130865-100131539
chr15	CG	SV	100130865	100131539	122	-	.	ID=1370;Type=tandem-duplication;Left=chr15:99844049-99844519;Right=chr15:100130865-100131539
chr15	CG	SV	99968989	99983555	37	.	.	ID=5402;Type=probable-inversion;Left=chr15:99968989-99969687+;Right=chr15:99982987-99983555-;Distance=14566;DiscordantMatePairAlignments=37;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	99968989	99969687	37	+	.	ID=5402;Type=probable-inversion;Left=chr15:99968989-99969687;Right=chr15:99982987-99983555
chr15	CG	SV	99982987	99983555	37	+	.	ID=5402;Type=probable-inversion;Left=chr15:99968989-99969687;Right=chr15:99982987-99983555
chr15	CG	SV	99981771	100040303	147	.	.	ID=355;Type=probable-inversion;Left=chr15:99981771-99982420-;Right=chr15:100039689-100040303+;Distance=57269;DiscordantMatePairAlignments=147;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=NM_152334:-;XRef=;Frequency=0.00
chr15	CG	SV	99981771	99982420	147	-	.	ID=355;Type=probable-inversion;Left=chr15:99981771-99982420;Right=chr15:100039689-100040303
chr15	CG	SV	100039689	100040303	147	-	.	ID=355;Type=probable-inversion;Left=chr15:99981771-99982420;Right=chr15:100039689-100040303
chr16	CG	SV	152039	161099	17	.	.	ID=3036;Type=deletion;Left=chr16:152039-152559+;Right=chr16:160508-161099+;Distance=8469;DiscordantMatePairAlignments=17;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	152039	152559	17	+	.	ID=3036;Type=deletion;Left=chr16:152039-152559;Right=chr16:160508-161099
chr16	CG	SV	160508	161099	17	+	.	ID=3036;Type=deletion;Left=chr16:152039-152559;Right=chr16:160508-161099
chr16	CG	SV	1362938	1364658	161	.	.	ID=3033;Type=deletion;Left=chr16:1362938-1363567+;Right=chr16:1364200-1364658+;Distance=1262;DiscordantMatePairAlignments=161;LeftRepeat=Self chain;Tandem period 55;RightRepeat=Self chain;Tandem period 55;LeftGenes=NM_023076:-;RightGenes=NM_023076:-;XRef=rs72390176 (chr16:1363011-1364219);Frequency=1.00
chr16	CG	SV	1362938	1363567	161	+	.	ID=3033;Type=deletion;Left=chr16:1362938-1363567;Right=chr16:1364200-1364658
chr16	CG	SV	1364200	1364658	161	+	.	ID=3033;Type=deletion;Left=chr16:1362938-1363567;Right=chr16:1364200-1364658
chr16	CG	SV	1972851	2013696	37	.	.	ID=3032;Type=deletion;Left=chr16:1972851-1973536+;Right=chr16:2013149-2013696+;Distance=40298;DiscordantMatePairAlignments=37;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	1972851	1973536	37	+	.	ID=3032;Type=deletion;Left=chr16:1972851-1973536;Right=chr16:2013149-2013696
chr16	CG	SV	2013149	2013696	37	+	.	ID=3032;Type=deletion;Left=chr16:1972851-1973536;Right=chr16:2013149-2013696
chr16	CG	SV	11591265	11593267	22	.	.	ID=2829;Type=deletion;Left=chr16:11591265-11591904+;Right=chr16:11592826-11593267+;Distance=1561;DiscordantMatePairAlignments=22;LeftRepeat=AluJo:SINE:Alu;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr16	CG	SV	11591265	11591904	22	+	.	ID=2829;Type=deletion;Left=chr16:11591265-11591904;Right=chr16:11592826-11593267
chr16	CG	SV	11592826	11593267	22	+	.	ID=2829;Type=deletion;Left=chr16:11591265-11591904;Right=chr16:11592826-11593267
chr16	CG	SV	13201968	13204703	70	.	.	ID=2828;Type=deletion;Left=chr16:13201968-13202733+;Right=chr16:13203997-13204703+;Distance=2029;DiscordantMatePairAlignments=70;LeftRepeat=;RightRepeat=L1MC4a:LINE:L1;LeftGenes=NM_001145204:+;RightGenes=NM_001145204:+;XRef=;Frequency=0.59
chr16	CG	SV	13201968	13202733	70	+	.	ID=2828;Type=deletion;Left=chr16:13201968-13202733;Right=chr16:13203997-13204703
chr16	CG	SV	13203997	13204703	70	+	.	ID=2828;Type=deletion;Left=chr16:13201968-13202733;Right=chr16:13203997-13204703
chr16	CG	SV	14360737	14361803	14	.	.	ID=2827;Type=deletion;Left=chr16:14360737-14361374+;Right=chr16:14361155-14361803+;Distance=418;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=rs72460419 (chr16:14360736-14361154);Frequency=0.00
chr16	CG	SV	14360737	14361374	14	+	.	ID=2827;Type=deletion;Left=chr16:14360737-14361374;Right=chr16:14361155-14361803
chr16	CG	SV	14361155	14361803	14	+	.	ID=2827;Type=deletion;Left=chr16:14360737-14361374;Right=chr16:14361155-14361803
chr16	CG	SV	14488263	33858185	119	.	.	ID=151;Type=complex;Left=chr16:14488263-14488376-;Right=chr16:33857677-33858185+;Distance=19369301;DiscordantMatePairAlignments=119;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=NM_001134477:-;NM_002582:-;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	14488263	14488376	119	-	.	ID=151;Type=complex;Left=chr16:14488263-14488376;Right=chr16:33857677-33858185
chr16	CG	SV	33857677	33858185	119	-	.	ID=151;Type=complex;Left=chr16:14488263-14488376;Right=chr16:33857677-33858185
chr16	CG	SV	16841867	16848654	169	.	.	ID=2825;Type=deletion;Left=chr16:16841867-16842527+;Right=chr16:16847918-16848654+;Distance=6051;DiscordantMatePairAlignments=169;LeftRepeat=Self chain;RightRepeat=L1ME3B:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71962966 (chr16:16841879-16847930);Frequency=0.94
chr16	CG	SV	16841867	16842527	169	+	.	ID=2825;Type=deletion;Left=chr16:16841867-16842527;Right=chr16:16847918-16848654
chr16	CG	SV	16847918	16848654	169	+	.	ID=2825;Type=deletion;Left=chr16:16841867-16842527;Right=chr16:16847918-16848654
chr16	CG	SV	18740031	18746270	44	.	.	ID=2823;Type=deletion;Left=chr16:18740031-18740666+;Right=chr16:18745883-18746270+;Distance=5852;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_015092:-;RightGenes=NM_015092:-;XRef=rs67687398 (chr16:18740025-18745877);Frequency=0.88
chr16	CG	SV	18740031	18740666	44	+	.	ID=2823;Type=deletion;Left=chr16:18740031-18740666;Right=chr16:18745883-18746270
chr16	CG	SV	18745883	18746270	44	+	.	ID=2823;Type=deletion;Left=chr16:18740031-18740666;Right=chr16:18745883-18746270
chr16	CG	SV	21501943	22618252	37	.	.	ID=5235;Type=probable-inversion;Left=chr16:21501943-21502156+;Right=chr16:22617666-22618252-;Distance=1116309;DiscordantMatePairAlignments=37;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	21501943	21502156	37	+	.	ID=5235;Type=probable-inversion;Left=chr16:21501943-21502156;Right=chr16:22617666-22618252
chr16	CG	SV	22617666	22618252	37	+	.	ID=5235;Type=probable-inversion;Left=chr16:21501943-21502156;Right=chr16:22617666-22618252
chr16	CG	SV	22955276	22957722	344	.	.	ID=2819;Type=deletion;Left=chr16:22955276-22955912+;Right=chr16:22957032-22957722+;Distance=1756;DiscordantMatePairAlignments=344;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67692612 (chr16:22955282-22957032);Frequency=0.88
chr16	CG	SV	22955276	22955912	344	+	.	ID=2819;Type=deletion;Left=chr16:22955276-22955912;Right=chr16:22957032-22957722
chr16	CG	SV	22957032	22957722	344	+	.	ID=2819;Type=deletion;Left=chr16:22955276-22955912;Right=chr16:22957032-22957722
chr16	CG	SV	23667858	23670242	11	.	.	ID=2818;Type=deletion;Left=chr16:23667858-23668129+;Right=chr16:23669766-23670242+;Distance=1908;DiscordantMatePairAlignments=11;LeftRepeat=(TTTC)n:Simple_repeat:Simple_repeat;Self chain;Tandem TTTC;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr16	CG	SV	23667858	23668129	11	+	.	ID=2818;Type=deletion;Left=chr16:23667858-23668129;Right=chr16:23669766-23670242
chr16	CG	SV	23669766	23670242	11	+	.	ID=2818;Type=deletion;Left=chr16:23667858-23668129;Right=chr16:23669766-23670242
chr16	CG	SV	25247612	25251123	38	.	.	ID=2816;Type=deletion;Left=chr16:25247612-25248139+;Right=chr16:25250630-25251123+;Distance=3018;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72108142 (chr16:25247612-25250630);Frequency=0.88
chr16	CG	SV	25247612	25248139	38	+	.	ID=2816;Type=deletion;Left=chr16:25247612-25248139;Right=chr16:25250630-25251123
chr16	CG	SV	25250630	25251123	38	+	.	ID=2816;Type=deletion;Left=chr16:25247612-25248139;Right=chr16:25250630-25251123
chr16	CG	SV	26292123	26293833	112	.	.	ID=1189;Type=tandem-duplication;Left=chr16:26292123-26292872-;Right=chr16:26293043-26293833-;Distance=961;DiscordantMatePairAlignments=112;LeftRepeat=(TGGA)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;Tandem GATG;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	26292123	26292872	112	-	.	ID=1189;Type=tandem-duplication;Left=chr16:26292123-26292872;Right=chr16:26293043-26293833
chr16	CG	SV	26293043	26293833	112	-	.	ID=1189;Type=tandem-duplication;Left=chr16:26292123-26292872;Right=chr16:26293043-26293833
chr16	CG	SV	29716288	30966334	184	.	.	ID=1188;Type=tandem-duplication;Left=chr16:29716288-29716800-;Right=chr16:30965704-30966334-;Distance=1249534;DiscordantMatePairAlignments=184;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	29716288	29716800	184	-	.	ID=1188;Type=tandem-duplication;Left=chr16:29716288-29716800;Right=chr16:30965704-30966334
chr16	CG	SV	30965704	30966334	184	-	.	ID=1188;Type=tandem-duplication;Left=chr16:29716288-29716800;Right=chr16:30965704-30966334
chr16	CG	SV	33829643	33831011	14	.	.	ID=2809;Type=deletion;Left=chr16:33829643-33830076+;Right=chr16:33830566-33831011+;Distance=923;DiscordantMatePairAlignments=14;LeftRepeat=L1MEc:LINE:L1;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	33829643	33830076	14	+	.	ID=2809;Type=deletion;Left=chr16:33829643-33830076;Right=chr16:33830566-33831011
chr16	CG	SV	33830566	33831011	14	+	.	ID=2809;Type=deletion;Left=chr16:33829643-33830076;Right=chr16:33830566-33831011
chr16	CG	SV	33834291	33840682	24	.	.	ID=2808;Type=deletion;Left=chr16:33834291-33834919+;Right=chr16:33840263-33840682+;Distance=5972;DiscordantMatePairAlignments=24;LeftRepeat=L1PA4:LINE:L1;SegDup;Self chain;RightRepeat=L1MA9:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr16	CG	SV	33834291	33834919	24	+	.	ID=2808;Type=deletion;Left=chr16:33834291-33834919;Right=chr16:33840263-33840682
chr16	CG	SV	33840263	33840682	24	+	.	ID=2808;Type=deletion;Left=chr16:33834291-33834919;Right=chr16:33840263-33840682
chr16	CG	SV	33852431	33853489	21	.	.	ID=2805;Type=deletion;Left=chr16:33852431-33852905+;Right=chr16:33852872-33853489+;Distance=441;DiscordantMatePairAlignments=21;LeftRepeat=SegDup;Self chain;RightRepeat=AluSq:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	33852431	33852905	21	+	.	ID=2805;Type=deletion;Left=chr16:33852431-33852905;Right=chr16:33852872-33853489
chr16	CG	SV	33852872	33853489	21	+	.	ID=2805;Type=deletion;Left=chr16:33852431-33852905;Right=chr16:33852872-33853489
chr16	CG	SV	33857196	33858128	24	.	.	ID=2803;Type=complex;Left=chr16:33857196-33857827+;Right=chr16:33857588-33858128+;Distance=392;DiscordantMatePairAlignments=24;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr16	CG	SV	33857196	33857827	24	+	.	ID=2803;Type=complex;Left=chr16:33857196-33857827;Right=chr16:33857588-33858128
chr16	CG	SV	33857588	33858128	24	+	.	ID=2803;Type=complex;Left=chr16:33857196-33857827;Right=chr16:33857588-33858128
chr16	CG	SV	33859664	33863532	70	.	.	ID=1185;Type=complex;Left=chr16:33859664-33860096-;Right=chr16:33862770-33863532-;Distance=3436;DiscordantMatePairAlignments=70;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	33859664	33860096	70	-	.	ID=1185;Type=complex;Left=chr16:33859664-33860096;Right=chr16:33862770-33863532
chr16	CG	SV	33862770	33863532	70	-	.	ID=1185;Type=complex;Left=chr16:33859664-33860096;Right=chr16:33862770-33863532
chr16	CG	SV	46837945	46838876	51	.	.	ID=1177;Type=tandem-duplication;Left=chr16:46837945-46838423-;Right=chr16:46838427-46838876-;Distance=453;DiscordantMatePairAlignments=51;LeftRepeat=;RightRepeat=;LeftGenes=NM_031490:+;RightGenes=NM_031490:+;XRef=;Frequency=1.00
chr16	CG	SV	46837945	46838423	51	-	.	ID=1177;Type=tandem-duplication;Left=chr16:46837945-46838423;Right=chr16:46838427-46838876
chr16	CG	SV	46838427	46838876	51	-	.	ID=1177;Type=tandem-duplication;Left=chr16:46837945-46838423;Right=chr16:46838427-46838876
chr16	CG	SV	55174529	55175498	18	.	.	ID=2794;Type=deletion;Left=chr16:55174529-55174981+;Right=chr16:55174863-55175498+;Distance=334;DiscordantMatePairAlignments=18;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr16	CG	SV	55174529	55174981	18	+	.	ID=2794;Type=deletion;Left=chr16:55174529-55174981;Right=chr16:55174863-55175498
chr16	CG	SV	55174863	55175498	18	+	.	ID=2794;Type=deletion;Left=chr16:55174529-55174981;Right=chr16:55174863-55175498
chr16	CG	SV	55923812	55925033	12	.	.	ID=2793;Type=deletion;Left=chr16:55923812-55924140+;Right=chr16:55924619-55925033+;Distance=807;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=L1MB7:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr16	CG	SV	55923812	55924140	12	+	.	ID=2793;Type=deletion;Left=chr16:55923812-55924140;Right=chr16:55924619-55925033
chr16	CG	SV	55924619	55925033	12	+	.	ID=2793;Type=deletion;Left=chr16:55923812-55924140;Right=chr16:55924619-55925033
chr16	CG	SV	56282896	56285965	151	.	.	ID=2792;Type=deletion;Left=chr16:56282896-56283226+;Right=chr16:56285347-56285965+;Distance=2451;DiscordantMatePairAlignments=151;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr16	CG	SV	56282896	56283226	151	+	.	ID=2792;Type=deletion;Left=chr16:56282896-56283226;Right=chr16:56285347-56285965
chr16	CG	SV	56285347	56285965	151	+	.	ID=2792;Type=deletion;Left=chr16:56282896-56283226;Right=chr16:56285347-56285965
chr16	CG	SV	59467546	59471979	48	.	.	ID=2788;Type=deletion;Left=chr16:59467546-59468153+;Right=chr16:59471433-59471979+;Distance=3887;DiscordantMatePairAlignments=48;LeftRepeat=L1HS:LINE:L1;RightRepeat=MER65C:LTR:ERV1;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=0.20
chr16	CG	SV	59467546	59468153	48	+	.	ID=2788;Type=deletion;Left=chr16:59467546-59468153;Right=chr16:59471433-59471979
chr16	CG	SV	59471433	59471979	48	+	.	ID=2788;Type=deletion;Left=chr16:59467546-59468153;Right=chr16:59471433-59471979
chr16	CG	SV	68281808	68282978	53	.	.	ID=1174;Type=tandem-duplication;Left=chr16:68281808-68282304-;Right=chr16:68282435-68282978-;Distance=674;DiscordantMatePairAlignments=53;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001113178:+;NM_006599:+;NM_138713:+;NM_138714:+;NM_173214:+;RightGenes=NM_001113178:+;NM_006599:+;NM_138713:+;NM_138714:+;NM_173214:+;XRef=;Frequency=0.00
chr16	CG	SV	68281808	68282304	53	-	.	ID=1174;Type=tandem-duplication;Left=chr16:68281808-68282304;Right=chr16:68282435-68282978
chr16	CG	SV	68282435	68282978	53	-	.	ID=1174;Type=tandem-duplication;Left=chr16:68281808-68282304;Right=chr16:68282435-68282978
chr16	CG	SV	68318987	68321214	50	.	.	ID=144;Type=distal-duplication;Left=chr16:68318987-68319307-;Right=chr16:68320423-68321214+;Distance=1116;DiscordantMatePairAlignments=50;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr16	CG	SV	68318987	68319307	50	-	.	ID=144;Type=distal-duplication;Left=chr16:68318987-68319307;Right=chr16:68320423-68321214
chr16	CG	SV	68320423	68321214	50	-	.	ID=144;Type=distal-duplication;Left=chr16:68318987-68319307;Right=chr16:68320423-68321214
chr16	CG	SV	68319632	68320388	139	.	.	ID=5228;Type=distal-duplication;Left=chr16:68319632-68319921+;Right=chr16:68319834-68320388-;Distance=756;DiscordantMatePairAlignments=139;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr16	CG	SV	68319632	68319921	139	+	.	ID=5228;Type=distal-duplication;Left=chr16:68319632-68319921;Right=chr16:68319834-68320388
chr16	CG	SV	68319834	68320388	139	+	.	ID=5228;Type=distal-duplication;Left=chr16:68319632-68319921;Right=chr16:68319834-68320388
chr16	CG	SV	68411832	68416522	17	.	.	ID=2783;Type=distal-duplication;Left=chr16:68411832-68412266+;Right=chr16:68416306-68416522+;Distance=4474;DiscordantMatePairAlignments=17;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_007014:+;NM_199423:+;RightGenes=NM_007014:+;NM_199423:+;XRef=;Frequency=0.41
chr16	CG	SV	68411832	68412266	17	+	.	ID=2783;Type=distal-duplication;Left=chr16:68411832-68412266;Right=chr16:68416306-68416522
chr16	CG	SV	68416306	68416522	17	+	.	ID=2783;Type=distal-duplication;Left=chr16:68411832-68412266;Right=chr16:68416306-68416522
chr16	CG	SV	68411530	68416522	53	.	.	ID=1173;Type=distal-duplication;Left=chr16:68411530-68412186-;Right=chr16:68416314-68416522-;Distance=4336;DiscordantMatePairAlignments=53;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=Self chain;LeftGenes=NM_007014:+;NM_199423:+;RightGenes=NM_007014:+;NM_199423:+;XRef=;Frequency=0.41
chr16	CG	SV	68411530	68412186	53	-	.	ID=1173;Type=distal-duplication;Left=chr16:68411530-68412186;Right=chr16:68416314-68416522
chr16	CG	SV	68416314	68416522	53	-	.	ID=1173;Type=distal-duplication;Left=chr16:68411530-68412186;Right=chr16:68416314-68416522
chr16	CG	SV	69535300	69538219	261	.	.	ID=2781;Type=deletion;Left=chr16:69535300-69535919+;Right=chr16:69537395-69538219+;Distance=2095;DiscordantMatePairAlignments=261;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_032821:-;RightGenes=NM_032821:-;XRef=rs67363752 (chr16:69535300-69537395);Frequency=1.00
chr16	CG	SV	69535300	69535919	261	+	.	ID=2781;Type=deletion;Left=chr16:69535300-69535919;Right=chr16:69537395-69538219
chr16	CG	SV	69537395	69538219	261	+	.	ID=2781;Type=deletion;Left=chr16:69535300-69535919;Right=chr16:69537395-69538219
chr16	CG	SV	69721878	69722979	17	.	.	ID=2779;Type=deletion;Left=chr16:69721878-69722400+;Right=chr16:69722205-69722979+;Distance=327;DiscordantMatePairAlignments=17;LeftRepeat=AluYb8:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=NM_017558:-;NM_032821:-;RightGenes=NM_017558:-;NM_032821:-;XRef=rs66885572 (chr16:69721878-69722205);Frequency=1.00
chr16	CG	SV	69721878	69722400	17	+	.	ID=2779;Type=deletion;Left=chr16:69721878-69722400;Right=chr16:69722205-69722979
chr16	CG	SV	69722205	69722979	17	+	.	ID=2779;Type=deletion;Left=chr16:69721878-69722400;Right=chr16:69722205-69722979
chr16	CG	SV	73987401	73988634	14	.	.	ID=2776;Type=deletion;Left=chr16:73987401-73987749+;Right=chr16:73988243-73988634+;Distance=842;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_006324:-;RightGenes=NM_006324:-;XRef=;Frequency=0.82
chr16	CG	SV	73987401	73987749	14	+	.	ID=2776;Type=deletion;Left=chr16:73987401-73987749;Right=chr16:73988243-73988634
chr16	CG	SV	73988243	73988634	14	+	.	ID=2776;Type=deletion;Left=chr16:73987401-73987749;Right=chr16:73988243-73988634
chr16	CG	SV	75096634	75102348	138	.	.	ID=2775;Type=deletion;Left=chr16:75096634-75097250+;Right=chr16:75101526-75102348+;Distance=4892;DiscordantMatePairAlignments=138;LeftRepeat=L1ME1:LINE:L1;Self chain;RightRepeat=L1MB8:LINE:L1;Self chain;LeftGenes=NM_033401:+;NM_138994:+;RightGenes=NM_033401:+;NM_138994:+;XRef=rs67420665 (chr16:75096635-75101526);Frequency=1.00
chr16	CG	SV	75096634	75097250	138	+	.	ID=2775;Type=deletion;Left=chr16:75096634-75097250;Right=chr16:75101526-75102348
chr16	CG	SV	75101526	75102348	138	+	.	ID=2775;Type=deletion;Left=chr16:75096634-75097250;Right=chr16:75101526-75102348
chr16	CG	SV	76595480	76598872	32	.	.	ID=1172;Type=tandem-duplication;Left=chr16:76595480-76596039-;Right=chr16:76598692-76598872-;Distance=2833;DiscordantMatePairAlignments=32;LeftRepeat=;RightRepeat=MLT1F:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr16	CG	SV	76595480	76596039	32	-	.	ID=1172;Type=tandem-duplication;Left=chr16:76595480-76596039;Right=chr16:76598692-76598872
chr16	CG	SV	76598692	76598872	32	-	.	ID=1172;Type=tandem-duplication;Left=chr16:76595480-76596039;Right=chr16:76598692-76598872
chr16	CG	SV	76929139	76942994	70	.	.	ID=2773;Type=deletion;Left=chr16:76929139-76929764+;Right=chr16:76942399-76942994+;Distance=13260;DiscordantMatePairAlignments=70;LeftRepeat=;RightRepeat=L1MB8:LINE:L1;LeftGenes=NM_016373:+;RightGenes=NM_016373:+;XRef=;Frequency=0.35
chr16	CG	SV	76929139	76929764	70	+	.	ID=2773;Type=deletion;Left=chr16:76929139-76929764;Right=chr16:76942399-76942994
chr16	CG	SV	76942399	76942994	70	+	.	ID=2773;Type=deletion;Left=chr16:76929139-76929764;Right=chr16:76942399-76942994
chr16	CG	SV	79534006	79541177	14	.	.	ID=2770;Type=deletion;Left=chr16:79534006-79534509+;Right=chr16:79540786-79541177+;Distance=6780;DiscordantMatePairAlignments=14;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr16	CG	SV	79534006	79534509	14	+	.	ID=2770;Type=deletion;Left=chr16:79534006-79534509;Right=chr16:79540786-79541177
chr16	CG	SV	79540786	79541177	14	+	.	ID=2770;Type=deletion;Left=chr16:79534006-79534509;Right=chr16:79540786-79541177
chr16	CG	SV	79731410	79732384	76	.	.	ID=2768;Type=deletion;Left=chr16:79731410-79732174+;Right=chr16:79731917-79732384+;Distance=507;DiscordantMatePairAlignments=76;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_052892:-;RightGenes=NM_052892:-;XRef=rs71136601 (chr16:79731342-79731850);Frequency=0.94
chr16	CG	SV	79731410	79732174	76	+	.	ID=2768;Type=deletion;Left=chr16:79731410-79732174;Right=chr16:79731917-79732384
chr16	CG	SV	79731917	79732384	76	+	.	ID=2768;Type=deletion;Left=chr16:79731410-79732174;Right=chr16:79731917-79732384
chr16	CG	SV	80355614	80356702	218	.	.	ID=1170;Type=complex;Left=chr16:80355614-80356159-;Right=chr16:80356170-80356702-;Distance=543;DiscordantMatePairAlignments=218;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr16	CG	SV	80355614	80356159	218	-	.	ID=1170;Type=complex;Left=chr16:80355614-80356159;Right=chr16:80356170-80356702
chr16	CG	SV	80356170	80356702	218	-	.	ID=1170;Type=complex;Left=chr16:80355614-80356159;Right=chr16:80356170-80356702
chr16	CG	SV	80355584	80356702	11	.	.	ID=1171;Type=complex;Left=chr16:80355584-80356159-;Right=chr16:80356425-80356702-;Distance=543;DiscordantMatePairAlignments=11;LeftRepeat=AluJb:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chr16	CG	SV	80355584	80356159	11	-	.	ID=1171;Type=complex;Left=chr16:80355584-80356159;Right=chr16:80356425-80356702
chr16	CG	SV	80356425	80356702	11	-	.	ID=1171;Type=complex;Left=chr16:80355584-80356159;Right=chr16:80356425-80356702
chr16	CG	SV	83745521	83747775	81	.	.	ID=142;Type=distal-duplication;Left=chr16:83745521-83746214-;Right=chr16:83747305-83747775+;Distance=1091;DiscordantMatePairAlignments=81;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	83745521	83746214	81	-	.	ID=142;Type=distal-duplication;Left=chr16:83745521-83746214;Right=chr16:83747305-83747775
chr16	CG	SV	83747305	83747775	81	-	.	ID=142;Type=distal-duplication;Left=chr16:83745521-83746214;Right=chr16:83747305-83747775
chr16	CG	SV	83746438	83747116	44	.	.	ID=5226;Type=distal-duplication;Left=chr16:83746438-83746997+;Right=chr16:83746873-83747116-;Distance=678;DiscordantMatePairAlignments=44;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr16	CG	SV	83746438	83746997	44	+	.	ID=5226;Type=distal-duplication;Left=chr16:83746438-83746997;Right=chr16:83746873-83747116
chr16	CG	SV	83746873	83747116	44	+	.	ID=5226;Type=distal-duplication;Left=chr16:83746438-83746997;Right=chr16:83746873-83747116
chr16	CG	SV	84841822	84842801	15	.	.	ID=2765;Type=deletion;Left=chr16:84841822-84842591+;Right=chr16:84842130-84842801+;Distance=308;DiscordantMatePairAlignments=15;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66683203 (chr16:84841809-84842117);Frequency=1.00
chr16	CG	SV	84841822	84842591	15	+	.	ID=2765;Type=deletion;Left=chr16:84841822-84842591;Right=chr16:84842130-84842801
chr16	CG	SV	84842130	84842801	15	+	.	ID=2765;Type=deletion;Left=chr16:84841822-84842591;Right=chr16:84842130-84842801
chr17	CG	SV	20625	22190	70	.	.	ID=2757;Type=deletion;Left=chr17:20625-21088+;Right=chr17:21797-22190+;Distance=1172;DiscordantMatePairAlignments=70;LeftRepeat=(CCGGG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 32;Tandem period 98;RightRepeat=SUBTEL_sa:Satellite:Satellite;Self chain;Tandem period 32;Tandem period 98;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr17	CG	SV	20625	21088	70	+	.	ID=2757;Type=deletion;Left=chr17:20625-21088;Right=chr17:21797-22190
chr17	CG	SV	21797	22190	70	+	.	ID=2757;Type=deletion;Left=chr17:20625-21088;Right=chr17:21797-22190
chr17	CG	SV	136805	138846	10	.	.	ID=2755;Type=deletion;Left=chr17:136805-137094+;Right=chr17:138733-138846+;Distance=1928;DiscordantMatePairAlignments=10;LeftRepeat=CT-rich:Low_complexity:Low_complexity;Self chain;Tandem period 106;Tandem period 26;Tandem period 80;RightRepeat=CT-rich:Low_complexity:Low_complexity;Self chain;Tandem period 106;Tandem period 26;Tandem period 80;LeftGenes=NM_006987:-;RightGenes=NM_006987:-;XRef=;Frequency=0.71
chr17	CG	SV	136805	137094	10	+	.	ID=2755;Type=deletion;Left=chr17:136805-137094;Right=chr17:138733-138846
chr17	CG	SV	138733	138846	10	+	.	ID=2755;Type=deletion;Left=chr17:136805-137094;Right=chr17:138733-138846
chr17	CG	SV	193767	197613	63	.	.	ID=2754;Type=deletion;Left=chr17:193767-194382+;Right=chr17:197057-197613+;Distance=3290;DiscordantMatePairAlignments=63;LeftRepeat=(CAT)n:Simple_repeat:Simple_repeat;Self chain;Tandem CAT;RightRepeat=(TAAA)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=NM_006987:-;RightGenes=NM_006987:-;XRef=rs71369090 (chr17:193724-197057);Frequency=0.65
chr17	CG	SV	193767	194382	63	+	.	ID=2754;Type=deletion;Left=chr17:193767-194382;Right=chr17:197057-197613
chr17	CG	SV	197057	197613	63	+	.	ID=2754;Type=deletion;Left=chr17:193767-194382;Right=chr17:197057-197613
chr17	CG	SV	210551	211231	13	.	.	ID=2753;Type=deletion;Left=chr17:210551-211206+;Right=chr17:210893-211231+;Distance=342;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 38;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr17	CG	SV	210551	211206	13	+	.	ID=2753;Type=deletion;Left=chr17:210551-211206;Right=chr17:210893-211231
chr17	CG	SV	210893	211231	13	+	.	ID=2753;Type=deletion;Left=chr17:210551-211206;Right=chr17:210893-211231
chr17	CG	SV	670609	671997	93	.	.	ID=2750;Type=deletion;Left=chr17:670609-671280+;Right=chr17:671748-671997+;Distance=1139;DiscordantMatePairAlignments=93;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem period 312;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_022463:-;RightGenes=NM_022463:-;XRef=;Frequency=0.94
chr17	CG	SV	670609	671280	93	+	.	ID=2750;Type=deletion;Left=chr17:670609-671280;Right=chr17:671748-671997
chr17	CG	SV	671748	671997	93	+	.	ID=2750;Type=deletion;Left=chr17:670609-671280;Right=chr17:671748-671997
chr17	CG	SV	685760	686781	48	.	.	ID=2749;Type=deletion;Left=chr17:685760-686257+;Right=chr17:686161-686781+;Distance=401;DiscordantMatePairAlignments=48;LeftRepeat=Self chain;Tandem period 133;Tandem period 45;RightRepeat=Self chain;LeftGenes=NM_022463:-;RightGenes=NM_022463:-;XRef=rs71371583 (chr17:685701-686103);Frequency=0.65
chr17	CG	SV	685760	686257	48	+	.	ID=2749;Type=deletion;Left=chr17:685760-686257;Right=chr17:686161-686781
chr17	CG	SV	686161	686781	48	+	.	ID=2749;Type=deletion;Left=chr17:685760-686257;Right=chr17:686161-686781
chr17	CG	SV	1068620	1070041	38	.	.	ID=141;Type=probable-inversion;Left=chr17:1068620-1069127-;Right=chr17:1069771-1070041+;Distance=644;DiscordantMatePairAlignments=38;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr17	CG	SV	1068620	1069127	38	-	.	ID=141;Type=probable-inversion;Left=chr17:1068620-1069127;Right=chr17:1069771-1070041
chr17	CG	SV	1069771	1070041	38	-	.	ID=141;Type=probable-inversion;Left=chr17:1068620-1069127;Right=chr17:1069771-1070041
chr17	CG	SV	1093295	1094954	13	.	.	ID=2747;Type=deletion;Left=chr17:1093295-1093794+;Right=chr17:1094638-1094954+;Distance=1343;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr17	CG	SV	1093295	1093794	13	+	.	ID=2747;Type=deletion;Left=chr17:1093295-1093794;Right=chr17:1094638-1094954
chr17	CG	SV	1094638	1094954	13	+	.	ID=2747;Type=deletion;Left=chr17:1093295-1093794;Right=chr17:1094638-1094954
chr17	CG	SV	1601419	1602700	61	.	.	ID=2746;Type=deletion;Left=chr17:1601419-1601971+;Right=chr17:1602150-1602700+;Distance=731;DiscordantMatePairAlignments=61;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSq:SINE:Alu;LeftGenes=NM_000934:+;NM_001165920:+;NM_001165921:+;RightGenes=NM_000934:+;NM_001165920:+;NM_001165921:+;XRef=;Frequency=0.47
chr17	CG	SV	1601419	1601971	61	+	.	ID=2746;Type=deletion;Left=chr17:1601419-1601971;Right=chr17:1602150-1602700
chr17	CG	SV	1602150	1602700	61	+	.	ID=2746;Type=deletion;Left=chr17:1601419-1601971;Right=chr17:1602150-1602700
chr17	CG	SV	8187408	8189176	111	.	.	ID=2742;Type=deletion;Left=chr17:8187408-8188001+;Right=chr17:8188764-8189176+;Distance=1356;DiscordantMatePairAlignments=111;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_153007:+;RightGenes=NM_153007:+;XRef=;Frequency=0.29
chr17	CG	SV	8187408	8188001	111	+	.	ID=2742;Type=deletion;Left=chr17:8187408-8188001;Right=chr17:8188764-8189176
chr17	CG	SV	8188764	8189176	111	+	.	ID=2742;Type=deletion;Left=chr17:8187408-8188001;Right=chr17:8188764-8189176
chr17	CG	SV	13161223	13162219	12	.	.	ID=2736;Type=deletion;Left=chr17:13161223-13161865+;Right=chr17:13161550-13162219+;Distance=327;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66560097 (chr17:13161223-13161550);Frequency=0.88
chr17	CG	SV	13161223	13161865	12	+	.	ID=2736;Type=deletion;Left=chr17:13161223-13161865;Right=chr17:13161550-13162219
chr17	CG	SV	13161550	13162219	12	+	.	ID=2736;Type=deletion;Left=chr17:13161223-13161865;Right=chr17:13161550-13162219
chr17	CG	SV	14130636	14132922	66	.	.	ID=2735;Type=deletion;Left=chr17:14130636-14131333+;Right=chr17:14132281-14132922+;Distance=1645;DiscordantMatePairAlignments=66;LeftRepeat=MER49:LTR:ERV1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68129134 (chr17:14130635-14132280);Frequency=1.00
chr17	CG	SV	14130636	14131333	66	+	.	ID=2735;Type=deletion;Left=chr17:14130636-14131333;Right=chr17:14132281-14132922
chr17	CG	SV	14132281	14132922	66	+	.	ID=2735;Type=deletion;Left=chr17:14130636-14131333;Right=chr17:14132281-14132922
chr17	CG	SV	15162438	15162941	26	+	.	ID=5139;Type=complex;Left=chr17:15162438-15162941+;Right=chr22:27395459-27395912-;Distance=;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=;LeftGenes=NM_031898:-;RightGenes=NM_001145418:-;XRef=;Frequency=0.00
chr22	CG	SV	27395459	27395912	26	+	.	ID=5139;Type=complex;Left=chr17:15162438-15162941+;Right=chr22:27395459-27395912-;Distance=;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=;LeftGenes=NM_031898:-;RightGenes=NM_001145418:-;XRef=;Frequency=0.00
chr17	CG	SV	15730283	15735049	36	.	.	ID=2734;Type=deletion;Left=chr17:15730283-15730747+;Right=chr17:15734518-15735049+;Distance=4235;DiscordantMatePairAlignments=36;LeftRepeat=Self chain;RightRepeat=(TTTA)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem TTTA;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr17	CG	SV	15730283	15730747	36	+	.	ID=2734;Type=deletion;Left=chr17:15730283-15730747;Right=chr17:15734518-15735049
chr17	CG	SV	15734518	15735049	36	+	.	ID=2734;Type=deletion;Left=chr17:15730283-15730747;Right=chr17:15734518-15735049
chr17	CG	SV	17171174	17172700	123	.	.	ID=2733;Type=deletion;Left=chr17:17171174-17171872+;Right=chr17:17171910-17172700+;Distance=736;DiscordantMatePairAlignments=123;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_020201:+;RightGenes=NM_020201:+;XRef=rs66473553 (chr17:17171082-17171958);Frequency=0.82
chr17	CG	SV	17171174	17171872	123	+	.	ID=2733;Type=deletion;Left=chr17:17171174-17171872;Right=chr17:17171910-17172700
chr17	CG	SV	17171910	17172700	123	+	.	ID=2733;Type=deletion;Left=chr17:17171174-17171872;Right=chr17:17171910-17172700
chr17	CG	SV	18070771	18090238	39	.	.	ID=5224;Type=probable-inversion;Left=chr17:18070771-18071407+;Right=chr17:18089644-18090238-;Distance=19467;DiscordantMatePairAlignments=39;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_004140:+;RightGenes=NM_002018:-;XRef=;Frequency=0.00
chr17	CG	SV	18070771	18071407	39	+	.	ID=5224;Type=probable-inversion;Left=chr17:18070771-18071407;Right=chr17:18089644-18090238
chr17	CG	SV	18089644	18090238	39	+	.	ID=5224;Type=probable-inversion;Left=chr17:18070771-18071407;Right=chr17:18089644-18090238
chr17	CG	SV	18731878	18733506	48	.	.	ID=2730;Type=deletion;Left=chr17:18731878-18732424+;Right=chr17:18732903-18733506+;Distance=1025;DiscordantMatePairAlignments=48;LeftRepeat=SVA:Other:Other;Self chain;RightRepeat=Self chain;LeftGenes=NM_002767:+;RightGenes=NM_002767:+;XRef=rs67305483 (chr17:18731863-18732888);Frequency=0.94
chr17	CG	SV	18731878	18732424	48	+	.	ID=2730;Type=deletion;Left=chr17:18731878-18732424;Right=chr17:18732903-18733506
chr17	CG	SV	18732903	18733506	48	+	.	ID=2730;Type=deletion;Left=chr17:18731878-18732424;Right=chr17:18732903-18733506
chr17	CG	SV	21261870	21264065	163	.	.	ID=2728;Type=deletion;Left=chr17:21261870-21262512+;Right=chr17:21263414-21264065+;Distance=1544;DiscordantMatePairAlignments=163;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_021012:+;RightGenes=NM_021012:+;XRef=rs67372876 (chr17:21261870-21263413);Frequency=1.00
chr17	CG	SV	21261870	21262512	163	+	.	ID=2728;Type=deletion;Left=chr17:21261870-21262512;Right=chr17:21263414-21264065
chr17	CG	SV	21263414	21264065	163	+	.	ID=2728;Type=deletion;Left=chr17:21261870-21262512;Right=chr17:21263414-21264065
chr17	CG	SV	23804514	23808033	47	.	.	ID=2725;Type=deletion;Left=chr17:23804514-23804790+;Right=chr17:23807620-23808033+;Distance=3106;DiscordantMatePairAlignments=47;LeftRepeat=MER21B:LTR:ERV1;Self chain;RightRepeat=SVA:Other:Other;Self chain;Tandem period 40;LeftGenes=;RightGenes=;XRef=rs72148141 (chr17:23804512-23807618);Frequency=0.76
chr17	CG	SV	23804514	23804790	47	+	.	ID=2725;Type=deletion;Left=chr17:23804514-23804790;Right=chr17:23807620-23808033
chr17	CG	SV	23807620	23808033	47	+	.	ID=2725;Type=deletion;Left=chr17:23804514-23804790;Right=chr17:23807620-23808033
chr17	CG	SV	25525595	25539027	87	.	.	ID=2724;Type=deletion;Left=chr17:25525595-25526223+;Right=chr17:25538316-25539027+;Distance=12721;DiscordantMatePairAlignments=87;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_032141:+;RightGenes=;XRef=;Frequency=0.00
chr17	CG	SV	25525595	25526223	87	+	.	ID=2724;Type=deletion;Left=chr17:25525595-25526223;Right=chr17:25538316-25539027
chr17	CG	SV	25538316	25539027	87	+	.	ID=2724;Type=deletion;Left=chr17:25525595-25526223;Right=chr17:25538316-25539027
chr17	CG	SV	35631637	35632443	25	.	.	ID=2720;Type=deletion;Left=chr17:35631637-35632221+;Right=chr17:35632108-35632443+;Distance=471;DiscordantMatePairAlignments=25;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_133264:+;RightGenes=NM_133264:+;XRef=;Frequency=1.00
chr17	CG	SV	35631637	35632221	25	+	.	ID=2720;Type=deletion;Left=chr17:35631637-35632221;Right=chr17:35632108-35632443
chr17	CG	SV	35632108	35632443	25	+	.	ID=2720;Type=deletion;Left=chr17:35631637-35632221;Right=chr17:35632108-35632443
chr17	CG	SV	36849187	36849689	68	-	.	ID=1013;Type=interchromosomal;Left=chr17:36849187-36849689-;Right=chr22:39682031-39682618-;Distance=;DiscordantMatePairAlignments=68;LeftRepeat=Self chain;RightRepeat=AluS:SINE:Alu;LeftGenes=NM_006771:-;RightGenes=NM_014248:+;XRef=;Frequency=0.00
chr22	CG	SV	39682031	39682618	68	-	.	ID=1013;Type=interchromosomal;Left=chr17:36849187-36849689-;Right=chr22:39682031-39682618-;Distance=;DiscordantMatePairAlignments=68;LeftRepeat=Self chain;RightRepeat=AluS:SINE:Alu;LeftGenes=NM_006771:-;RightGenes=NM_014248:+;XRef=;Frequency=0.00
chr17	CG	SV	38736588	38819413	82	.	.	ID=136;Type=probable-inversion;Left=chr17:38736588-38737115-;Right=chr17:38818959-38819413+;Distance=81844;DiscordantMatePairAlignments=82;LeftRepeat=SegDup;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=NR_027412:-;NR_027413:-;XRef=;Frequency=1.00
chr17	CG	SV	38736588	38737115	82	-	.	ID=136;Type=probable-inversion;Left=chr17:38736588-38737115;Right=chr17:38818959-38819413
chr17	CG	SV	38818959	38819413	82	-	.	ID=136;Type=probable-inversion;Left=chr17:38736588-38737115;Right=chr17:38818959-38819413
chr17	CG	SV	38738273	38755817	69	.	.	ID=2718;Type=deletion;Left=chr17:38738273-38739082+;Right=chr17:38755395-38755817+;Distance=17122;DiscordantMatePairAlignments=69;LeftRepeat=AluSx:SINE:Alu;SegDup;Self chain;Tandem A;RightRepeat=SegDup;Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr17	CG	SV	38738273	38739082	69	+	.	ID=2718;Type=deletion;Left=chr17:38738273-38739082;Right=chr17:38755395-38755817
chr17	CG	SV	38755395	38755817	69	+	.	ID=2718;Type=deletion;Left=chr17:38738273-38739082;Right=chr17:38755395-38755817
chr17	CG	SV	38739015	38821965	25	.	.	ID=2716;Type=deletion;Left=chr17:38739015-38739405+;Right=chr17:38821536-38821965+;Distance=82521;DiscordantMatePairAlignments=25;LeftRepeat=MIRb:SINE:MIR;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NR_027412:-;NR_027413:-;XRef=;Frequency=0.82
chr17	CG	SV	38739015	38739405	25	+	.	ID=2716;Type=deletion;Left=chr17:38739015-38739405;Right=chr17:38821536-38821965
chr17	CG	SV	38821536	38821965	25	+	.	ID=2716;Type=deletion;Left=chr17:38739015-38739405;Right=chr17:38821536-38821965
chr17	CG	SV	38756724	38822737	31	.	.	ID=5223;Type=probable-inversion;Left=chr17:38756724-38757234+;Right=chr17:38822256-38822737-;Distance=66013;DiscordantMatePairAlignments=31;LeftRepeat=LTR13:LTR:ERVK;SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr17	CG	SV	38756724	38757234	31	+	.	ID=5223;Type=probable-inversion;Left=chr17:38756724-38757234;Right=chr17:38822256-38822737
chr17	CG	SV	38822256	38822737	31	+	.	ID=5223;Type=probable-inversion;Left=chr17:38756724-38757234;Right=chr17:38822256-38822737
chr17	CG	SV	38793635	38796498	105	.	.	ID=2717;Type=deletion;Left=chr17:38793635-38794393+;Right=chr17:38795854-38796498+;Distance=2219;DiscordantMatePairAlignments=105;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs66799059 (chr17:38793491-38795710);Frequency=0.41
chr17	CG	SV	38793635	38794393	105	+	.	ID=2717;Type=deletion;Left=chr17:38793635-38794393;Right=chr17:38795854-38796498
chr17	CG	SV	38795854	38796498	105	+	.	ID=2717;Type=deletion;Left=chr17:38793635-38794393;Right=chr17:38795854-38796498
chr17	CG	SV	38872582	38874205	42	.	.	ID=2714;Type=deletion;Left=chr17:38872582-38873236+;Right=chr17:38873870-38874205+;Distance=1288;DiscordantMatePairAlignments=42;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr17	CG	SV	38872582	38873236	42	+	.	ID=2714;Type=deletion;Left=chr17:38872582-38873236;Right=chr17:38873870-38874205
chr17	CG	SV	38873870	38874205	42	+	.	ID=2714;Type=deletion;Left=chr17:38872582-38873236;Right=chr17:38873870-38874205
chr17	CG	SV	41642958	42530823	28	.	.	ID=1162;Type=tandem-duplication;Left=chr17:41642958-41643642-;Right=chr17:42530741-42530823-;Distance=887181;DiscordantMatePairAlignments=28;LeftRepeat=AluSc:SINE:Alu;Self chain;Tandem A;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr17	CG	SV	41642958	41643642	28	-	.	ID=1162;Type=tandem-duplication;Left=chr17:41642958-41643642;Right=chr17:42530741-42530823
chr17	CG	SV	42530741	42530823	28	-	.	ID=1162;Type=tandem-duplication;Left=chr17:41642958-41643642;Right=chr17:42530741-42530823
chr17	CG	SV	42569727	42571242	158	.	.	ID=2712;Type=complex;Left=chr17:42569727-42570320+;Right=chr17:42571105-42571242+;Distance=1378;DiscordantMatePairAlignments=158;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42569727	42570320	158	+	.	ID=2712;Type=complex;Left=chr17:42569727-42570320;Right=chr17:42571105-42571242
chr17	CG	SV	42571105	42571242	158	+	.	ID=2712;Type=complex;Left=chr17:42569727-42570320;Right=chr17:42571105-42571242
chr17	CG	SV	42569727	42574803	345	.	.	ID=2711;Type=complex;Left=chr17:42569727-42570196+;Right=chr17:42574216-42574803+;Distance=4489;DiscordantMatePairAlignments=345;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42569727	42570196	345	+	.	ID=2711;Type=complex;Left=chr17:42569727-42570196;Right=chr17:42574216-42574803
chr17	CG	SV	42574216	42574803	345	+	.	ID=2711;Type=complex;Left=chr17:42569727-42570196;Right=chr17:42574216-42574803
chr17	CG	SV	42574803	42589637	114	.	.	ID=2705;Type=complex;Left=chr17:42574803-42575377+;Right=chr17:42589277-42589637+;Distance=14474;DiscordantMatePairAlignments=114;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42574803	42575377	114	+	.	ID=2705;Type=complex;Left=chr17:42574803-42575377;Right=chr17:42589277-42589637
chr17	CG	SV	42589277	42589637	114	+	.	ID=2705;Type=complex;Left=chr17:42574803-42575377;Right=chr17:42589277-42589637
chr17	CG	SV	42576345	42589743	174	.	.	ID=2704;Type=complex;Left=chr17:42576345-42576447+;Right=chr17:42589277-42589743+;Distance=12932;DiscordantMatePairAlignments=174;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42576345	42576447	174	+	.	ID=2704;Type=complex;Left=chr17:42576345-42576447;Right=chr17:42589277-42589743
chr17	CG	SV	42589277	42589743	174	+	.	ID=2704;Type=complex;Left=chr17:42576345-42576447;Right=chr17:42589277-42589743
chr17	CG	SV	42589747	42590669	67	.	.	ID=2700;Type=complex;Left=chr17:42589747-42590211+;Right=chr17:42590569-42590669+;Distance=822;DiscordantMatePairAlignments=67;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42589747	42590211	67	+	.	ID=2700;Type=complex;Left=chr17:42589747-42590211;Right=chr17:42590569-42590669
chr17	CG	SV	42590569	42590669	67	+	.	ID=2700;Type=complex;Left=chr17:42589747-42590211;Right=chr17:42590569-42590669
chr17	CG	SV	42589747	42604426	101	.	.	ID=2697;Type=complex;Left=chr17:42589747-42590208+;Right=chr17:42604280-42604426+;Distance=14533;DiscordantMatePairAlignments=101;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42589747	42590208	101	+	.	ID=2697;Type=complex;Left=chr17:42589747-42590208;Right=chr17:42604280-42604426
chr17	CG	SV	42604280	42604426	101	+	.	ID=2697;Type=complex;Left=chr17:42589747-42590208;Right=chr17:42604280-42604426
chr17	CG	SV	42589747	42602407	45	.	.	ID=2698;Type=complex;Left=chr17:42589747-42590207+;Right=chr17:42602281-42602407+;Distance=12534;DiscordantMatePairAlignments=45;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42589747	42590207	45	+	.	ID=2698;Type=complex;Left=chr17:42589747-42590207;Right=chr17:42602281-42602407
chr17	CG	SV	42602281	42602407	45	+	.	ID=2698;Type=complex;Left=chr17:42589747-42590207;Right=chr17:42602281-42602407
chr17	CG	SV	42589747	42614005	25	.	.	ID=2695;Type=complex;Left=chr17:42589747-42590175+;Right=chr17:42613926-42614005+;Distance=24179;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42589747	42590175	25	+	.	ID=2695;Type=complex;Left=chr17:42589747-42590175;Right=chr17:42613926-42614005
chr17	CG	SV	42613926	42614005	25	+	.	ID=2695;Type=complex;Left=chr17:42589747-42590175;Right=chr17:42613926-42614005
chr17	CG	SV	42590669	42621655	103	.	.	ID=2692;Type=complex;Left=chr17:42590669-42590770+;Right=chr17:42621509-42621655+;Distance=30840;DiscordantMatePairAlignments=103;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001114091:-;NM_001256:-;RightGenes=NM_001114091:-;NM_001256:-;XRef=;Frequency=1.00
chr17	CG	SV	42590669	42590770	103	+	.	ID=2692;Type=complex;Left=chr17:42590669-42590770;Right=chr17:42621509-42621655
chr17	CG	SV	42621509	42621655	103	+	.	ID=2692;Type=complex;Left=chr17:42590669-42590770;Right=chr17:42621509-42621655
chr17	CG	SV	44392292	44393204	60	.	.	ID=2690;Type=deletion;Left=chr17:44392292-44392801+;Right=chr17:44392889-44393204+;Distance=597;DiscordantMatePairAlignments=60;LeftRepeat=Self chain;Tandem period 40;RightRepeat=Self chain;LeftGenes=NM_004123:-;RightGenes=NM_004123:-;XRef=rs71886448 (chr17:44392094-44392694);Frequency=1.00
chr17	CG	SV	44392292	44392801	60	+	.	ID=2690;Type=deletion;Left=chr17:44392292-44392801;Right=chr17:44392889-44393204
chr17	CG	SV	44392889	44393204	60	+	.	ID=2690;Type=deletion;Left=chr17:44392292-44392801;Right=chr17:44392889-44393204
chr17	CG	SV	44706794	44708497	115	.	.	ID=2688;Type=deletion;Left=chr17:44706794-44707378+;Right=chr17:44708097-44708497+;Distance=1303;DiscordantMatePairAlignments=115;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.29
chr17	CG	SV	44706794	44707378	115	+	.	ID=2688;Type=deletion;Left=chr17:44706794-44707378;Right=chr17:44708097-44708497
chr17	CG	SV	44708097	44708497	115	+	.	ID=2688;Type=deletion;Left=chr17:44706794-44707378;Right=chr17:44708097-44708497
chr17	CG	SV	45782537	45783243	17	.	.	ID=2686;Type=deletion;Left=chr17:45782537-45783127+;Right=chr17:45782921-45783243+;Distance=384;DiscordantMatePairAlignments=17;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_022167:+;RightGenes=NM_022167:+;XRef=rs71143435 (chr17:45782307-45782690);Frequency=0.47
chr17	CG	SV	45782537	45783127	17	+	.	ID=2686;Type=deletion;Left=chr17:45782537-45783127;Right=chr17:45782921-45783243
chr17	CG	SV	45782921	45783243	17	+	.	ID=2686;Type=deletion;Left=chr17:45782537-45783127;Right=chr17:45782921-45783243
chr17	CG	SV	50234983	50235967	21	.	.	ID=2685;Type=deletion;Left=chr17:50234983-50235591+;Right=chr17:50235514-50235967+;Distance=531;DiscordantMatePairAlignments=21;LeftRepeat=Self chain;RightRepeat=L1MEb:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr17	CG	SV	50234983	50235591	21	+	.	ID=2685;Type=deletion;Left=chr17:50234983-50235591;Right=chr17:50235514-50235967
chr17	CG	SV	50235514	50235967	21	+	.	ID=2685;Type=deletion;Left=chr17:50234983-50235591;Right=chr17:50235514-50235967
chr17	CG	SV	52304941	52307396	12	.	.	ID=2683;Type=deletion;Left=chr17:52304941-52305398+;Right=chr17:52307293-52307396+;Distance=2352;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr17	CG	SV	52304941	52305398	12	+	.	ID=2683;Type=deletion;Left=chr17:52304941-52305398;Right=chr17:52307293-52307396
chr17	CG	SV	52307293	52307396	12	+	.	ID=2683;Type=deletion;Left=chr17:52304941-52305398;Right=chr17:52307293-52307396
chr17	CG	SV	52380503	52600388	41	.	.	ID=1161;Type=tandem-duplication;Left=chr17:52380503-52380988-;Right=chr17:52599816-52600388-;Distance=219400;DiscordantMatePairAlignments=41;LeftRepeat=Self chain;RightRepeat=L1MC1:LINE:L1;LeftGenes=NM_004645:-;RightGenes=;XRef=;Frequency=0.00
chr17	CG	SV	52380503	52380988	41	-	.	ID=1161;Type=tandem-duplication;Left=chr17:52380503-52380988;Right=chr17:52599816-52600388
chr17	CG	SV	52599816	52600388	41	-	.	ID=1161;Type=tandem-duplication;Left=chr17:52380503-52380988;Right=chr17:52599816-52600388
chr17	CG	SV	52384579	52388063	29	.	.	ID=2682;Type=deletion;Left=chr17:52384579-52384988+;Right=chr17:52387530-52388063+;Distance=2951;DiscordantMatePairAlignments=29;LeftRepeat=SegDup;Self chain;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=NM_004645:-;RightGenes=NM_004645:-;XRef=;Frequency=0.00
chr17	CG	SV	52384579	52384988	29	+	.	ID=2682;Type=deletion;Left=chr17:52384579-52384988;Right=chr17:52387530-52388063
chr17	CG	SV	52387530	52388063	29	+	.	ID=2682;Type=deletion;Left=chr17:52384579-52384988;Right=chr17:52387530-52388063
chr17	CG	SV	53042810	53045268	29	.	.	ID=2681;Type=deletion;Left=chr17:53042810-53043545+;Right=chr17:53044915-53045268+;Distance=2105;DiscordantMatePairAlignments=29;LeftRepeat=AluSg:SINE:Alu;RightRepeat=;LeftGenes=NM_138962:+;NM_170721:+;RightGenes=NM_138962:+;NM_170721:+;XRef=;Frequency=0.88
chr17	CG	SV	53042810	53043545	29	+	.	ID=2681;Type=deletion;Left=chr17:53042810-53043545;Right=chr17:53044915-53045268
chr17	CG	SV	53044915	53045268	29	+	.	ID=2681;Type=deletion;Left=chr17:53042810-53043545;Right=chr17:53044915-53045268
chr17	CG	SV	65468894	65469678	84	.	.	ID=1159;Type=tandem-duplication;Left=chr17:65468894-65469279-;Right=chr17:65469263-65469678-;Distance=399;DiscordantMatePairAlignments=84;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr17	CG	SV	65468894	65469279	84	-	.	ID=1159;Type=tandem-duplication;Left=chr17:65468894-65469279;Right=chr17:65469263-65469678
chr17	CG	SV	65469263	65469678	84	-	.	ID=1159;Type=tandem-duplication;Left=chr17:65468894-65469279;Right=chr17:65469263-65469678
chr17	CG	SV	65536286	65536914	10	.	.	ID=1158;Type=tandem-duplication;Left=chr17:65536286-65536607-;Right=chr17:65536601-65536914-;Distance=307;DiscordantMatePairAlignments=10;LeftRepeat=L1P4e:LINE:L1;RightRepeat=L1P4e:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr17	CG	SV	65536286	65536607	10	-	.	ID=1158;Type=tandem-duplication;Left=chr17:65536286-65536607;Right=chr17:65536601-65536914
chr17	CG	SV	65536601	65536914	10	-	.	ID=1158;Type=tandem-duplication;Left=chr17:65536286-65536607;Right=chr17:65536601-65536914
chr17	CG	SV	69234127	69235077	10	.	.	ID=2669;Type=deletion;Left=chr17:69234127-69234697+;Right=chr17:69234633-69235077+;Distance=506;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 46;RightRepeat=Self chain;Tandem period 46;LeftGenes=;RightGenes=;XRef=rs72123924 (chr17:69233997-69234457);Frequency=0.47
chr17	CG	SV	69234127	69234697	10	+	.	ID=2669;Type=deletion;Left=chr17:69234127-69234697;Right=chr17:69234633-69235077
chr17	CG	SV	69234633	69235077	10	+	.	ID=2669;Type=deletion;Left=chr17:69234127-69234697;Right=chr17:69234633-69235077
chr17	CG	SV	76076499	76078830	35	.	.	ID=2661;Type=deletion;Left=chr17:76076499-76077012+;Right=chr17:76078487-76078830+;Distance=1988;DiscordantMatePairAlignments=35;LeftRepeat=G-rich:Low_complexity:Low_complexity;Tandem period 18;Tandem period 36;RightRepeat=G-rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=0.25
chr17	CG	SV	76076499	76077012	35	+	.	ID=2661;Type=deletion;Left=chr17:76076499-76077012;Right=chr17:76078487-76078830
chr17	CG	SV	76078487	76078830	35	+	.	ID=2661;Type=deletion;Left=chr17:76076499-76077012;Right=chr17:76078487-76078830
chr17	CG	SV	77085099	77086492	52	.	.	ID=2659;Type=deletion;Left=chr17:77085099-77085692+;Right=chr17:77086086-77086492+;Distance=987;DiscordantMatePairAlignments=52;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs72252307 (chr17:77085099-77086086);Frequency=0.88
chr17	CG	SV	77085099	77085692	52	+	.	ID=2659;Type=deletion;Left=chr17:77085099-77085692;Right=chr17:77086086-77086492
chr17	CG	SV	77086086	77086492	52	+	.	ID=2659;Type=deletion;Left=chr17:77085099-77085692;Right=chr17:77086086-77086492
chr17	CG	SV	77834977	77835703	16	.	.	ID=1156;Type=tandem-duplication;Left=chr17:77834977-77835344-;Right=chr17:77835317-77835703-;Distance=359;DiscordantMatePairAlignments=16;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr17	CG	SV	77834977	77835344	16	-	.	ID=1156;Type=tandem-duplication;Left=chr17:77834977-77835344;Right=chr17:77835317-77835703
chr17	CG	SV	77835317	77835703	16	-	.	ID=1156;Type=tandem-duplication;Left=chr17:77834977-77835344;Right=chr17:77835317-77835703
chr17	CG	SV	78653184	78654731	151	.	.	ID=2654;Type=deletion;Left=chr17:78653184-78654096+;Right=chr17:78654274-78654731+;Distance=1090;DiscordantMatePairAlignments=151;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72246678 (chr17:78653184-78654274);Frequency=0.59
chr17	CG	SV	78653184	78654096	151	+	.	ID=2654;Type=deletion;Left=chr17:78653184-78654096;Right=chr17:78654274-78654731
chr17	CG	SV	78654274	78654731	151	+	.	ID=2654;Type=deletion;Left=chr17:78653184-78654096;Right=chr17:78654274-78654731
chr18	CG	SV	5314645	5316785	51	.	.	ID=2630;Type=deletion;Left=chr18:5314645-5315164+;Right=chr18:5316244-5316785+;Distance=1599;DiscordantMatePairAlignments=51;LeftRepeat=;RightRepeat=L1PA11:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71657028 (chr18:5314645-5316244);Frequency=0.94
chr18	CG	SV	5314645	5315164	51	+	.	ID=2630;Type=deletion;Left=chr18:5314645-5315164;Right=chr18:5316244-5316785
chr18	CG	SV	5316244	5316785	51	+	.	ID=2630;Type=deletion;Left=chr18:5314645-5315164;Right=chr18:5316244-5316785
chr18	CG	SV	20157370	20159287	21	.	.	ID=2614;Type=deletion;Left=chr18:20157370-20157876+;Right=chr18:20158601-20159287+;Distance=1231;DiscordantMatePairAlignments=21;LeftRepeat=AluSg1:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_080597:-;RightGenes=NM_080597:-;XRef=rs67570303 (chr18:20157370-20158601);Frequency=0.41
chr18	CG	SV	20157370	20157876	21	+	.	ID=2614;Type=deletion;Left=chr18:20157370-20157876;Right=chr18:20158601-20159287
chr18	CG	SV	20158601	20159287	21	+	.	ID=2614;Type=deletion;Left=chr18:20157370-20157876;Right=chr18:20158601-20159287
chr18	CG	SV	20244740	20246688	202	.	.	ID=2613;Type=deletion;Left=chr18:20244740-20245389+;Right=chr18:20246045-20246688+;Distance=1305;DiscordantMatePairAlignments=202;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr18	CG	SV	20244740	20245389	202	+	.	ID=2613;Type=deletion;Left=chr18:20244740-20245389;Right=chr18:20246045-20246688
chr18	CG	SV	20246045	20246688	202	+	.	ID=2613;Type=deletion;Left=chr18:20244740-20245389;Right=chr18:20246045-20246688
chr18	CG	SV	21146492	21147427	10	.	.	ID=2612;Type=deletion;Left=chr18:21146492-21146951+;Right=chr18:21146816-21147427+;Distance=324;DiscordantMatePairAlignments=10;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NM_015461:-;RightGenes=NM_015461:-;XRef=rs35042432 (chr18:21146492-21146816);Frequency=0.82
chr18	CG	SV	21146492	21146951	10	+	.	ID=2612;Type=deletion;Left=chr18:21146492-21146951;Right=chr18:21146816-21147427
chr18	CG	SV	21146816	21147427	10	+	.	ID=2612;Type=deletion;Left=chr18:21146492-21146951;Right=chr18:21146816-21147427
chr18	CG	SV	22001809	22006036	28	.	.	ID=2611;Type=deletion;Left=chr18:22001809-22002474+;Right=chr18:22005326-22006036+;Distance=3517;DiscordantMatePairAlignments=28;LeftRepeat=MLT1B:LTR:MaLR;Self chain;RightRepeat=Self chain;LeftGenes=NM_001025096:+;NM_001025097:+;NM_144662:+;RightGenes=NM_001025096:+;NM_001025097:+;NM_144662:+;XRef=rs71170272 (chr18:22001811-22005328);Frequency=0.12
chr18	CG	SV	22001809	22002474	28	+	.	ID=2611;Type=deletion;Left=chr18:22001809-22002474;Right=chr18:22005326-22006036
chr18	CG	SV	22005326	22006036	28	+	.	ID=2611;Type=deletion;Left=chr18:22001809-22002474;Right=chr18:22005326-22006036
chr18	CG	SV	22825618	22826943	102	.	.	ID=2610;Type=deletion;Left=chr18:22825618-22826204+;Right=chr18:22826339-22826943+;Distance=721;DiscordantMatePairAlignments=102;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=NM_031422:-;RightGenes=NM_031422:-;XRef=;Frequency=0.82
chr18	CG	SV	22825618	22826204	102	+	.	ID=2610;Type=deletion;Left=chr18:22825618-22826204;Right=chr18:22826339-22826943
chr18	CG	SV	22826339	22826943	102	+	.	ID=2610;Type=deletion;Left=chr18:22825618-22826204;Right=chr18:22826339-22826943
chr18	CG	SV	25883688	25884713	17	.	.	ID=2607;Type=deletion;Left=chr18:25883688-25884345+;Right=chr18:25884014-25884713+;Distance=326;DiscordantMatePairAlignments=17;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10705442 (chr18:25883678-25884004);Frequency=0.94
chr18	CG	SV	25883688	25884345	17	+	.	ID=2607;Type=deletion;Left=chr18:25883688-25884345;Right=chr18:25884014-25884713
chr18	CG	SV	25884014	25884713	17	+	.	ID=2607;Type=deletion;Left=chr18:25883688-25884345;Right=chr18:25884014-25884713
chr18	CG	SV	30915970	30916741	19	.	.	ID=2604;Type=deletion;Left=chr18:30915970-30916664+;Right=chr18:30916287-30916741+;Distance=317;DiscordantMatePairAlignments=19;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=NM_001143826:+;NM_001143827:+;NM_014268:+;NR_026570:+;RightGenes=NM_001143826:+;NM_001143827:+;NM_014268:+;NR_026570:+;XRef=;Frequency=0.47
chr18	CG	SV	30915970	30916664	19	+	.	ID=2604;Type=deletion;Left=chr18:30915970-30916664;Right=chr18:30916287-30916741
chr18	CG	SV	30916287	30916741	19	+	.	ID=2604;Type=deletion;Left=chr18:30915970-30916664;Right=chr18:30916287-30916741
chr18	CG	SV	33560058	33561353	348	.	.	ID=2601;Type=deletion;Left=chr18:33560058-33560873+;Right=chr18:33560630-33561353+;Distance=572;DiscordantMatePairAlignments=348;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs68016188 (chr18:33560058-33560620);Frequency=0.71
chr18	CG	SV	33560058	33560873	348	+	.	ID=2601;Type=deletion;Left=chr18:33560058-33560873;Right=chr18:33560630-33561353
chr18	CG	SV	33560630	33561353	348	+	.	ID=2601;Type=deletion;Left=chr18:33560058-33560873;Right=chr18:33560630-33561353
chr18	CG	SV	33569634	33570463	13	.	.	ID=2600;Type=deletion;Left=chr18:33569634-33570331+;Right=chr18:33569952-33570463+;Distance=318;DiscordantMatePairAlignments=13;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=MER5B:DNA:MER1_type;LeftGenes=;RightGenes=;XRef=rs67951304 (chr18:33569619-33569937);Frequency=0.71
chr18	CG	SV	33569634	33570331	13	+	.	ID=2600;Type=deletion;Left=chr18:33569634-33570331;Right=chr18:33569952-33570463
chr18	CG	SV	33569952	33570463	13	+	.	ID=2600;Type=deletion;Left=chr18:33569634-33570331;Right=chr18:33569952-33570463
chr18	CG	SV	35315644	35316692	29	.	.	ID=2599;Type=deletion;Left=chr18:35315644-35316142+;Right=chr18:35315974-35316692+;Distance=330;DiscordantMatePairAlignments=29;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=;LeftGenes=NR_024391:-;RightGenes=NR_024391:-;XRef=rs35059019 (chr18:35315644-35315974);Frequency=1.00
chr18	CG	SV	35315644	35316142	29	+	.	ID=2599;Type=deletion;Left=chr18:35315644-35316142;Right=chr18:35315974-35316692
chr18	CG	SV	35315974	35316692	29	+	.	ID=2599;Type=deletion;Left=chr18:35315644-35316142;Right=chr18:35315974-35316692
chr18	CG	SV	36513891	36521339	84	.	.	ID=2598;Type=deletion;Left=chr18:36513891-36514551+;Right=chr18:36520748-36521339+;Distance=6857;DiscordantMatePairAlignments=84;LeftRepeat=MIRb:SINE:MIR;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr18	CG	SV	36513891	36514551	84	+	.	ID=2598;Type=deletion;Left=chr18:36513891-36514551;Right=chr18:36520748-36521339
chr18	CG	SV	36520748	36521339	84	+	.	ID=2598;Type=deletion;Left=chr18:36513891-36514551;Right=chr18:36520748-36521339
chr18	CG	SV	39285550	39287071	84	.	.	ID=2596;Type=deletion;Left=chr18:39285550-39286175+;Right=chr18:39286534-39287071+;Distance=984;DiscordantMatePairAlignments=84;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72163979 (chr18:39285542-39286526);Frequency=0.88
chr18	CG	SV	39285550	39286175	84	+	.	ID=2596;Type=deletion;Left=chr18:39285550-39286175;Right=chr18:39286534-39287071
chr18	CG	SV	39286534	39287071	84	+	.	ID=2596;Type=deletion;Left=chr18:39285550-39286175;Right=chr18:39286534-39287071
chr18	CG	SV	41515012	41515875	11	.	.	ID=2595;Type=deletion;Left=chr18:41515012-41515790+;Right=chr18:41515337-41515875+;Distance=325;DiscordantMatePairAlignments=11;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=NM_007163:+;RightGenes=NM_007163:+;XRef=rs68176567 (chr18:41515001-41515326);Frequency=1.00
chr18	CG	SV	41515012	41515790	11	+	.	ID=2595;Type=deletion;Left=chr18:41515012-41515790;Right=chr18:41515337-41515875
chr18	CG	SV	41515337	41515875	11	+	.	ID=2595;Type=deletion;Left=chr18:41515012-41515790;Right=chr18:41515337-41515875
chr18	CG	SV	42592431	42593303	15	.	.	ID=2594;Type=deletion;Left=chr18:42592431-42593095+;Right=chr18:42592768-42593303+;Distance=337;DiscordantMatePairAlignments=15;LeftRepeat=Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr18	CG	SV	42592431	42593095	15	+	.	ID=2594;Type=deletion;Left=chr18:42592431-42593095;Right=chr18:42592768-42593303
chr18	CG	SV	42592768	42593303	15	+	.	ID=2594;Type=deletion;Left=chr18:42592431-42593095;Right=chr18:42592768-42593303
chr18	CG	SV	48716565	48717606	31	.	.	ID=2590;Type=deletion;Left=chr18:48716565-48717141+;Right=chr18:48717030-48717606+;Distance=465;DiscordantMatePairAlignments=31;LeftRepeat=;RightRepeat=;LeftGenes=NM_005215:+;RightGenes=NM_005215:+;XRef=rs72465148 (chr18:48716563-48717028);Frequency=0.53
chr18	CG	SV	48716565	48717141	31	+	.	ID=2590;Type=deletion;Left=chr18:48716565-48717141;Right=chr18:48717030-48717606
chr18	CG	SV	48717030	48717606	31	+	.	ID=2590;Type=deletion;Left=chr18:48716565-48717141;Right=chr18:48717030-48717606
chr18	CG	SV	48742063	48743666	24	.	.	ID=2589;Type=deletion;Left=chr18:48742063-48742431+;Right=chr18:48743491-48743666+;Distance=1428;DiscordantMatePairAlignments=24;LeftRepeat=L1PA3:LINE:L1;RightRepeat=;LeftGenes=NM_005215:+;RightGenes=NM_005215:+;XRef=rs67593807 (chr18:48742063-48743491);Frequency=1.00
chr18	CG	SV	48742063	48742431	24	+	.	ID=2589;Type=deletion;Left=chr18:48742063-48742431;Right=chr18:48743491-48743666
chr18	CG	SV	48743491	48743666	24	+	.	ID=2589;Type=deletion;Left=chr18:48742063-48742431;Right=chr18:48743491-48743666
chr18	CG	SV	49390403	49392396	68	.	.	ID=2587;Type=deletion;Left=chr18:49390403-49390983+;Right=chr18:49391772-49392396+;Distance=1369;DiscordantMatePairAlignments=68;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr18	CG	SV	49390403	49390983	68	+	.	ID=2587;Type=deletion;Left=chr18:49390403-49390983;Right=chr18:49391772-49392396
chr18	CG	SV	49391772	49392396	68	+	.	ID=2587;Type=deletion;Left=chr18:49390403-49390983;Right=chr18:49391772-49392396
chr18	CG	SV	49459967	49465134	69	.	.	ID=2586;Type=deletion;Left=chr18:49459967-49460439+;Right=chr18:49464572-49465134+;Distance=4605;DiscordantMatePairAlignments=69;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr18	CG	SV	49459967	49460439	69	+	.	ID=2586;Type=deletion;Left=chr18:49459967-49460439;Right=chr18:49464572-49465134
chr18	CG	SV	49464572	49465134	69	+	.	ID=2586;Type=deletion;Left=chr18:49459967-49460439;Right=chr18:49464572-49465134
chr18	CG	SV	50206966	50211579	183	.	.	ID=2585;Type=deletion;Left=chr18:50206966-50207662+;Right=chr18:50210962-50211579+;Distance=3996;DiscordantMatePairAlignments=183;LeftRepeat=L1HS:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66588236 (chr18:50206961-50210957);Frequency=0.94
chr18	CG	SV	50206966	50207662	183	+	.	ID=2585;Type=deletion;Left=chr18:50206966-50207662;Right=chr18:50210962-50211579
chr18	CG	SV	50210962	50211579	183	+	.	ID=2585;Type=deletion;Left=chr18:50206966-50207662;Right=chr18:50210962-50211579
chr18	CG	SV	53097735	53100520	241	.	.	ID=2584;Type=deletion;Left=chr18:53097735-53098414+;Right=chr18:53099715-53100520+;Distance=1980;DiscordantMatePairAlignments=241;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66803181 (chr18:53097735-53099715);Frequency=1.00
chr18	CG	SV	53097735	53098414	241	+	.	ID=2584;Type=deletion;Left=chr18:53097735-53098414;Right=chr18:53099715-53100520
chr18	CG	SV	53099715	53100520	241	+	.	ID=2584;Type=deletion;Left=chr18:53097735-53098414;Right=chr18:53099715-53100520
chr18	CG	SV	53328447	53329430	31	.	.	ID=2583;Type=deletion;Left=chr18:53328447-53329077+;Right=chr18:53329079-53329430+;Distance=632;DiscordantMatePairAlignments=31;LeftRepeat=AluSp:SINE:Alu;Tandem period 313;RightRepeat=Tandem period 313;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr18	CG	SV	53328447	53329077	31	+	.	ID=2583;Type=deletion;Left=chr18:53328447-53329077;Right=chr18:53329079-53329430
chr18	CG	SV	53329079	53329430	31	+	.	ID=2583;Type=deletion;Left=chr18:53328447-53329077;Right=chr18:53329079-53329430
chr18	CG	SV	57823766	57825662	17	.	.	ID=2581;Type=deletion;Left=chr18:57823766-57824578+;Right=chr18:57825225-57825662+;Distance=1459;DiscordantMatePairAlignments=17;LeftRepeat=THE1A:LTR:MaLR;RightRepeat=THE1A:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chr18	CG	SV	57823766	57824578	17	+	.	ID=2581;Type=deletion;Left=chr18:57823766-57824578;Right=chr18:57825225-57825662
chr18	CG	SV	57825225	57825662	17	+	.	ID=2581;Type=deletion;Left=chr18:57823766-57824578;Right=chr18:57825225-57825662
chr18	CG	SV	59036596	59037037	29	.	.	ID=1093;Type=tandem-duplication;Left=chr18:59036596-59036814-;Right=chr18:59036806-59037037-;Distance=223;DiscordantMatePairAlignments=29;LeftRepeat=(TCCA)n:Simple_repeat:Simple_repeat;RightRepeat=(TCCA)n:Simple_repeat:Simple_repeat;LeftGenes=NM_000633:-;RightGenes=NM_000633:-;XRef=;Frequency=1.00
chr18	CG	SV	59036596	59036814	29	-	.	ID=1093;Type=tandem-duplication;Left=chr18:59036596-59036814;Right=chr18:59036806-59037037
chr18	CG	SV	59036806	59037037	29	-	.	ID=1093;Type=tandem-duplication;Left=chr18:59036596-59036814;Right=chr18:59036806-59037037
chr18	CG	SV	60936130	60991253	43	.	.	ID=1092;Type=tandem-duplication;Left=chr18:60936130-60936679-;Right=chr18:60990797-60991253-;Distance=54574;DiscordantMatePairAlignments=43;LeftRepeat=L2:LINE:L2;RightRepeat=L1PB1:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	60936130	60936679	43	-	.	ID=1092;Type=tandem-duplication;Left=chr18:60936130-60936679;Right=chr18:60990797-60991253
chr18	CG	SV	60990797	60991253	43	-	.	ID=1092;Type=tandem-duplication;Left=chr18:60936130-60936679;Right=chr18:60990797-60991253
chr18	CG	SV	61917853	61920993	22	.	.	ID=2578;Type=deletion;Left=chr18:61917853-61918416+;Right=chr18:61920186-61920993+;Distance=2333;DiscordantMatePairAlignments=22;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67314224 (chr18:61917853-61920186);Frequency=0.82
chr18	CG	SV	61917853	61918416	22	+	.	ID=2578;Type=deletion;Left=chr18:61917853-61918416;Right=chr18:61920186-61920993
chr18	CG	SV	61920186	61920993	22	+	.	ID=2578;Type=deletion;Left=chr18:61917853-61918416;Right=chr18:61920186-61920993
chr18	CG	SV	66997721	66998648	12	.	.	ID=2570;Type=deletion;Left=chr18:66997721-66998383+;Right=chr18:66998055-66998648+;Distance=334;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs10705382 (chr18:66997721-66998055);Frequency=0.88
chr18	CG	SV	66997721	66998383	12	+	.	ID=2570;Type=deletion;Left=chr18:66997721-66998383;Right=chr18:66998055-66998648
chr18	CG	SV	66998055	66998648	12	+	.	ID=2570;Type=deletion;Left=chr18:66997721-66998383;Right=chr18:66998055-66998648
chr18	CG	SV	69153641	69155580	22	.	.	ID=2569;Type=deletion;Left=chr18:69153641-69154217+;Right=chr18:69155235-69155580+;Distance=1594;DiscordantMatePairAlignments=22;LeftRepeat=AluY:SINE:Alu;Tandem A;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	69153641	69154217	22	+	.	ID=2569;Type=deletion;Left=chr18:69153641-69154217;Right=chr18:69155235-69155580
chr18	CG	SV	69155235	69155580	22	+	.	ID=2569;Type=deletion;Left=chr18:69153641-69154217;Right=chr18:69155235-69155580
chr18	CG	SV	72476184	72477529	123	.	.	ID=2565;Type=deletion;Left=chr18:72476184-72476799+;Right=chr18:72476985-72477529+;Distance=801;DiscordantMatePairAlignments=123;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr18	CG	SV	72476184	72476799	123	+	.	ID=2565;Type=deletion;Left=chr18:72476184-72476799;Right=chr18:72476985-72477529
chr18	CG	SV	72476985	72477529	123	+	.	ID=2565;Type=deletion;Left=chr18:72476184-72476799;Right=chr18:72476985-72477529
chr18	CG	SV	73395986	73397731	152	.	.	ID=2563;Type=deletion;Left=chr18:73395986-73396681+;Right=chr18:73397148-73397731+;Distance=1162;DiscordantMatePairAlignments=152;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66626305 (chr18:73395985-73397147);Frequency=0.82
chr18	CG	SV	73395986	73396681	152	+	.	ID=2563;Type=deletion;Left=chr18:73395986-73396681;Right=chr18:73397148-73397731
chr18	CG	SV	73397148	73397731	152	+	.	ID=2563;Type=deletion;Left=chr18:73395986-73396681;Right=chr18:73397148-73397731
chr18	CG	SV	74303125	74304934	72	.	.	ID=2561;Type=deletion;Left=chr18:74303125-74303687+;Right=chr18:74304344-74304934+;Distance=1219;DiscordantMatePairAlignments=72;LeftRepeat=L1PA8:LINE:L1;Self chain;RightRepeat=L1MEd:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs71773736 (chr18:74303109-74304328);Frequency=0.82
chr18	CG	SV	74303125	74303687	72	+	.	ID=2561;Type=deletion;Left=chr18:74303125-74303687;Right=chr18:74304344-74304934
chr18	CG	SV	74304344	74304934	72	+	.	ID=2561;Type=deletion;Left=chr18:74303125-74303687;Right=chr18:74304344-74304934
chr18	CG	SV	74474729	74475950	50	.	.	ID=2559;Type=deletion;Left=chr18:74474729-74475334+;Right=chr18:74475653-74475950+;Distance=924;DiscordantMatePairAlignments=50;LeftRepeat=Self chain;Tandem period 28;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr18	CG	SV	74474729	74475334	50	+	.	ID=2559;Type=deletion;Left=chr18:74474729-74475334;Right=chr18:74475653-74475950
chr18	CG	SV	74475653	74475950	50	+	.	ID=2559;Type=deletion;Left=chr18:74474729-74475334;Right=chr18:74475653-74475950
chr18	CG	SV	74696140	74697191	20	.	.	ID=2558;Type=deletion;Left=chr18:74696140-74696487+;Right=chr18:74696952-74697191+;Distance=812;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;Tandem period 58;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72091034 (chr18:74696027-74696491);Frequency=0.41
chr18	CG	SV	74696140	74696487	20	+	.	ID=2558;Type=deletion;Left=chr18:74696140-74696487;Right=chr18:74696952-74697191
chr18	CG	SV	74696952	74697191	20	+	.	ID=2558;Type=deletion;Left=chr18:74696140-74696487;Right=chr18:74696952-74697191
chr18	CG	SV	74763476	74767871	32	.	.	ID=2557;Type=deletion;Left=chr18:74763476-74763902+;Right=chr18:74767312-74767871+;Distance=3836;DiscordantMatePairAlignments=32;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs72010801 (chr18:74763476-74767311);Frequency=0.29
chr18	CG	SV	74763476	74763902	32	+	.	ID=2557;Type=deletion;Left=chr18:74763476-74763902;Right=chr18:74767312-74767871
chr18	CG	SV	74767312	74767871	32	+	.	ID=2557;Type=deletion;Left=chr18:74763476-74763902;Right=chr18:74767312-74767871
chr18	CG	SV	75061605	75061767	209	.	.	ID=1091;Type=tandem-duplication;Left=chr18:75061605-75061695-;Right=chr18:75061663-75061767-;Distance=72;DiscordantMatePairAlignments=209;LeftRepeat=G-rich:Low_complexity:Low_complexity;Self chain;Tandem period 33;RightRepeat=G-rich:Low_complexity:Low_complexity;Self chain;LeftGenes=NM_198531:+;RightGenes=NM_198531:+;XRef=;Frequency=1.00
chr18	CG	SV	75061605	75061695	209	-	.	ID=1091;Type=tandem-duplication;Left=chr18:75061605-75061695;Right=chr18:75061663-75061767
chr18	CG	SV	75061663	75061767	209	-	.	ID=1091;Type=tandem-duplication;Left=chr18:75061605-75061695;Right=chr18:75061663-75061767
chr18	CG	SV	75410986	75413656	100	.	.	ID=2556;Type=deletion;Left=chr18:75410986-75411664+;Right=chr18:75413072-75413656+;Distance=2086;DiscordantMatePairAlignments=100;LeftRepeat=Self chain;Tandem period 54;RightRepeat=Self chain;Tandem period 54;LeftGenes=;RightGenes=;XRef=rs71172180 (chr18:75410938-75413079);Frequency=0.59
chr18	CG	SV	75410986	75411664	100	+	.	ID=2556;Type=deletion;Left=chr18:75410986-75411664;Right=chr18:75413072-75413656
chr18	CG	SV	75413072	75413656	100	+	.	ID=2556;Type=deletion;Left=chr18:75410986-75411664;Right=chr18:75413072-75413656
chr18	CG	SV	75600809	75601912	12	.	.	ID=2555;Type=deletion;Left=chr18:75600809-75601362+;Right=chr18:75601199-75601912+;Distance=390;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem period 30;RightRepeat=Self chain;LeftGenes=NM_004715:+;NM_048368:+;RightGenes=NM_004715:+;NM_048368:+;XRef=rs67057083 (chr18:75600839-75601199);Frequency=1.00
chr18	CG	SV	75600809	75601362	12	+	.	ID=2555;Type=deletion;Left=chr18:75600809-75601362;Right=chr18:75601199-75601912
chr18	CG	SV	75601199	75601912	12	+	.	ID=2555;Type=deletion;Left=chr18:75600809-75601362;Right=chr18:75601199-75601912
chr18	CG	SV	75625519	75626757	10	.	.	ID=2554;Type=deletion;Left=chr18:75625519-75625900+;Right=chr18:75626593-75626757+;Distance=1074;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem period 43;RightRepeat=Self chain;Tandem period 43;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr18	CG	SV	75625519	75625900	10	+	.	ID=2554;Type=deletion;Left=chr18:75625519-75625900;Right=chr18:75626593-75626757
chr18	CG	SV	75626593	75626757	10	+	.	ID=2554;Type=deletion;Left=chr18:75625519-75625900;Right=chr18:75626593-75626757
chr19	CG	SV	385078	385545	11	.	.	ID=1090;Type=tandem-duplication;Left=chr19:385078-385300-;Right=chr19:385345-385545-;Distance=245;DiscordantMatePairAlignments=11;LeftRepeat=(TGAG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 12;Tandem period 16;Tandem period 28;RightRepeat=(TGAG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 36;LeftGenes=NM_012435:-;RightGenes=NM_012435:-;XRef=;Frequency=0.88
chr19	CG	SV	385078	385300	11	-	.	ID=1090;Type=tandem-duplication;Left=chr19:385078-385300;Right=chr19:385345-385545
chr19	CG	SV	385345	385545	11	-	.	ID=1090;Type=tandem-duplication;Left=chr19:385078-385300;Right=chr19:385345-385545
chr19	CG	SV	1092835	1093308	25	.	.	ID=1088;Type=tandem-duplication;Left=chr19:1092835-1093020-;Right=chr19:1093056-1093308-;Distance=288;DiscordantMatePairAlignments=25;LeftRepeat=Self chain;Tandem period 30;RightRepeat=Self chain;LeftGenes=NM_014963:-;RightGenes=NM_014963:-;XRef=;Frequency=1.00
chr19	CG	SV	1092835	1093020	25	-	.	ID=1088;Type=tandem-duplication;Left=chr19:1092835-1093020;Right=chr19:1093056-1093308
chr19	CG	SV	1093056	1093308	25	-	.	ID=1088;Type=tandem-duplication;Left=chr19:1092835-1093020;Right=chr19:1093056-1093308
chr19	CG	SV	2860556	2862040	14	.	.	ID=2552;Type=deletion;Left=chr19:2860556-2861057+;Right=chr19:2861883-2862040+;Distance=1327;DiscordantMatePairAlignments=14;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_173480:+;RightGenes=NM_173480:+;XRef=rs71163890 (chr19:2860347-2861527);Frequency=0.88
chr19	CG	SV	2860556	2861057	14	+	.	ID=2552;Type=deletion;Left=chr19:2860556-2861057;Right=chr19:2861883-2862040
chr19	CG	SV	2861883	2862040	14	+	.	ID=2552;Type=deletion;Left=chr19:2860556-2861057;Right=chr19:2861883-2862040
chr19	CG	SV	4569629	4571198	101	.	.	ID=2548;Type=deletion;Left=chr19:4569629-4570291+;Right=chr19:4570613-4571198+;Distance=984;DiscordantMatePairAlignments=101;LeftRepeat=(TCTCTG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 17;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr19	CG	SV	4569629	4570291	101	+	.	ID=2548;Type=deletion;Left=chr19:4569629-4570291;Right=chr19:4570613-4571198
chr19	CG	SV	4570613	4571198	101	+	.	ID=2548;Type=deletion;Left=chr19:4569629-4570291;Right=chr19:4570613-4571198
chr19	CG	SV	4690338	4690558	23	.	.	ID=5180;Type=probable-inversion;Left=chr19:4690338-4690940+;Right=chr19:4690422-4690558-;Distance=220;DiscordantMatePairAlignments=23;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr19	CG	SV	4690338	4690940	23	+	.	ID=5180;Type=probable-inversion;Left=chr19:4690338-4690940;Right=chr19:4690422-4690558
chr19	CG	SV	4690422	4690558	23	+	.	ID=5180;Type=probable-inversion;Left=chr19:4690338-4690940;Right=chr19:4690422-4690558
chr19	CG	SV	7209364	7210947	46	.	.	ID=2547;Type=deletion;Left=chr19:7209364-7210007+;Right=chr19:7210294-7210947+;Distance=930;DiscordantMatePairAlignments=46;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=NM_000208:-;NM_001079817:-;RightGenes=NM_000208:-;NM_001079817:-;XRef=;Frequency=0.12
chr19	CG	SV	7209364	7210007	46	+	.	ID=2547;Type=deletion;Left=chr19:7209364-7210007;Right=chr19:7210294-7210947
chr19	CG	SV	7210294	7210947	46	+	.	ID=2547;Type=deletion;Left=chr19:7209364-7210007;Right=chr19:7210294-7210947
chr19	CG	SV	8404114	8432308	18	.	.	ID=2545;Type=deletion;Left=chr19:8404114-8404555+;Right=chr19:8431839-8432308+;Distance=27725;DiscordantMatePairAlignments=18;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_001005415:+;NM_001005416:+;NM_016496:+;RightGenes=NM_005968:+;NM_031203:+;XRef=;Frequency=0.00
chr19	CG	SV	8404114	8404555	18	+	.	ID=2545;Type=deletion;Left=chr19:8404114-8404555;Right=chr19:8431839-8432308
chr19	CG	SV	8431839	8432308	18	+	.	ID=2545;Type=deletion;Left=chr19:8404114-8404555;Right=chr19:8431839-8432308
chr19	CG	SV	8420425	8421279	12	.	.	ID=2544;Type=deletion;Left=chr19:8420425-8421102+;Right=chr19:8420732-8421279+;Distance=307;DiscordantMatePairAlignments=12;LeftRepeat=AluYa5:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_005968:+;NM_031203:+;RightGenes=NM_005968:+;NM_031203:+;XRef=rs71166204 (chr19:8420425-8420732);Frequency=1.00
chr19	CG	SV	8420425	8421102	12	+	.	ID=2544;Type=deletion;Left=chr19:8420425-8421102;Right=chr19:8420732-8421279
chr19	CG	SV	8420732	8421279	12	+	.	ID=2544;Type=deletion;Left=chr19:8420425-8421102;Right=chr19:8420732-8421279
chr19	CG	SV	14567219	14567835	14	.	.	ID=1085;Type=tandem-duplication;Left=chr19:14567219-14567528-;Right=chr19:14567537-14567835-;Distance=307;DiscordantMatePairAlignments=14;LeftRepeat=(TGG)n:Simple_repeat:Simple_repeat;Self chain;RightRepeat=Self chain;LeftGenes=NM_207390:+;RightGenes=NM_207390:+;XRef=;Frequency=0.82
chr19	CG	SV	14567219	14567528	14	-	.	ID=1085;Type=tandem-duplication;Left=chr19:14567219-14567528;Right=chr19:14567537-14567835
chr19	CG	SV	14567537	14567835	14	-	.	ID=1085;Type=tandem-duplication;Left=chr19:14567219-14567528;Right=chr19:14567537-14567835
chr19	CG	SV	14907392	14911151	132	.	.	ID=2541;Type=deletion;Left=chr19:14907392-14907823+;Right=chr19:14910478-14911151+;Distance=3086;DiscordantMatePairAlignments=132;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr19	CG	SV	14907392	14907823	132	+	.	ID=2541;Type=deletion;Left=chr19:14907392-14907823;Right=chr19:14910478-14911151
chr19	CG	SV	14910478	14911151	132	+	.	ID=2541;Type=deletion;Left=chr19:14907392-14907823;Right=chr19:14910478-14911151
chr19	CG	SV	16434073	16560179	103	.	.	ID=5179;Type=probable-inversion;Left=chr19:16434073-16434667+;Right=chr19:16559679-16560179-;Distance=126106;DiscordantMatePairAlignments=103;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_021235:-;RightGenes=NM_004831:-;XRef=;Frequency=0.00
chr19	CG	SV	16434073	16434667	103	+	.	ID=5179;Type=probable-inversion;Left=chr19:16434073-16434667;Right=chr19:16559679-16560179
chr19	CG	SV	16559679	16560179	103	+	.	ID=5179;Type=probable-inversion;Left=chr19:16434073-16434667;Right=chr19:16559679-16560179
chr19	CG	SV	17303140	17311557	57	.	.	ID=1084;Type=tandem-duplication;Left=chr19:17303140-17303755-;Right=chr19:17311168-17311557-;Distance=7802;DiscordantMatePairAlignments=57;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_020959:-;RightGenes=NM_001128855:+;NM_032620:+;NM_133644:+;XRef=;Frequency=0.00
chr19	CG	SV	17303140	17303755	57	-	.	ID=1084;Type=tandem-duplication;Left=chr19:17303140-17303755;Right=chr19:17311168-17311557
chr19	CG	SV	17311168	17311557	57	-	.	ID=1084;Type=tandem-duplication;Left=chr19:17303140-17303755;Right=chr19:17311168-17311557
chr19	CG	SV	20377009	20380377	51	.	.	ID=2533;Type=deletion;Left=chr19:20377009-20377544+;Right=chr19:20379861-20380377+;Distance=2852;DiscordantMatePairAlignments=51;LeftRepeat=Self chain;RightRepeat=L1MB2:LINE:L1;Self chain;LeftGenes=NM_001039884:-;RightGenes=NM_001039884:-;XRef=rs72102339 (chr19:20377009-20379861);Frequency=0.88
chr19	CG	SV	20377009	20377544	51	+	.	ID=2533;Type=deletion;Left=chr19:20377009-20377544;Right=chr19:20379861-20380377
chr19	CG	SV	20379861	20380377	51	+	.	ID=2533;Type=deletion;Left=chr19:20377009-20377544;Right=chr19:20379861-20380377
chr19	CG	SV	21542570	21543999	44	.	.	ID=2532;Type=deletion;Left=chr19:21542570-21542955+;Right=chr19:21543553-21543999+;Distance=983;DiscordantMatePairAlignments=44;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chr19	CG	SV	21542570	21542955	44	+	.	ID=2532;Type=deletion;Left=chr19:21542570-21542955;Right=chr19:21543553-21543999
chr19	CG	SV	21543553	21543999	44	+	.	ID=2532;Type=deletion;Left=chr19:21542570-21542955;Right=chr19:21543553-21543999
chr19	CG	SV	23727297	23728225	12	.	.	ID=1083;Type=tandem-duplication;Left=chr19:23727297-23727761-;Right=chr19:23728069-23728225-;Distance=464;DiscordantMatePairAlignments=12;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_138286:-;RightGenes=NM_138286:-;XRef=;Frequency=1.00
chr19	CG	SV	23727297	23727761	12	-	.	ID=1083;Type=tandem-duplication;Left=chr19:23727297-23727761;Right=chr19:23728069-23728225
chr19	CG	SV	23728069	23728225	12	-	.	ID=1083;Type=tandem-duplication;Left=chr19:23727297-23727761;Right=chr19:23728069-23728225
chr19	CG	SV	34642028	34648622	236	.	.	ID=2502;Type=deletion;Left=chr19:34642028-34642609+;Right=chr19:34648011-34648622+;Distance=5983;DiscordantMatePairAlignments=236;LeftRepeat=HAL1b:LINE:L1;Self chain;RightRepeat=HAL1b:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs72413604 (chr19:34642037-34648020);Frequency=0.59
chr19	CG	SV	34642028	34642609	236	+	.	ID=2502;Type=deletion;Left=chr19:34642028-34642609;Right=chr19:34648011-34648622
chr19	CG	SV	34648011	34648622	236	+	.	ID=2502;Type=deletion;Left=chr19:34642028-34642609;Right=chr19:34648011-34648622
chr19	CG	SV	34868629	35397720	23	.	.	ID=1055;Type=tandem-duplication;Left=chr19:34868629-34869318-;Right=chr19:35397356-35397720-;Distance=528402;DiscordantMatePairAlignments=23;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	34868629	34869318	23	-	.	ID=1055;Type=tandem-duplication;Left=chr19:34868629-34869318;Right=chr19:35397356-35397720
chr19	CG	SV	35397356	35397720	23	-	.	ID=1055;Type=tandem-duplication;Left=chr19:34868629-34869318;Right=chr19:35397356-35397720
chr19	CG	SV	35080651	35085525	179	.	.	ID=2501;Type=deletion;Left=chr19:35080651-35081211+;Right=chr19:35084955-35085525+;Distance=4304;DiscordantMatePairAlignments=179;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem ATTTTT;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	35080651	35081211	179	+	.	ID=2501;Type=deletion;Left=chr19:35080651-35081211;Right=chr19:35084955-35085525
chr19	CG	SV	35084955	35085525	179	+	.	ID=2501;Type=deletion;Left=chr19:35080651-35081211;Right=chr19:35084955-35085525
chr19	CG	SV	35979345	35982075	44	.	.	ID=2499;Type=deletion;Left=chr19:35979345-35980095+;Right=chr19:35981618-35982075+;Distance=2273;DiscordantMatePairAlignments=44;LeftRepeat=AluSg:SINE:Alu;Self chain;RightRepeat=AluJb:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs66944303 (chr19:35979085-35981358);Frequency=0.94
chr19	CG	SV	35979345	35980095	44	+	.	ID=2499;Type=deletion;Left=chr19:35979345-35980095;Right=chr19:35981618-35982075
chr19	CG	SV	35981618	35982075	44	+	.	ID=2499;Type=deletion;Left=chr19:35979345-35980095;Right=chr19:35981618-35982075
chr19	CG	SV	37778448	37779241	56	.	.	ID=1054;Type=tandem-duplication;Left=chr19:37778448-37778751-;Right=chr19:37778895-37779241-;Distance=490;DiscordantMatePairAlignments=56;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr19	CG	SV	37778448	37778751	56	-	.	ID=1054;Type=tandem-duplication;Left=chr19:37778448-37778751;Right=chr19:37778895-37779241
chr19	CG	SV	37778895	37779241	56	-	.	ID=1054;Type=tandem-duplication;Left=chr19:37778448-37778751;Right=chr19:37778895-37779241
chr19	CG	SV	42152628	42153715	38	.	.	ID=2497;Type=deletion;Left=chr19:42152628-42153289+;Right=chr19:42153179-42153715+;Distance=551;DiscordantMatePairAlignments=38;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chr19	CG	SV	42152628	42153289	38	+	.	ID=2497;Type=deletion;Left=chr19:42152628-42153289;Right=chr19:42153179-42153715
chr19	CG	SV	42153179	42153715	38	+	.	ID=2497;Type=deletion;Left=chr19:42152628-42153289;Right=chr19:42153179-42153715
chr19	CG	SV	48220193	48548654	40	.	.	ID=1052;Type=tandem-duplication;Left=chr19:48220193-48220955-;Right=chr19:48548084-48548654-;Distance=327699;DiscordantMatePairAlignments=40;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=NM_001113410:-;NM_002785:-;NM_203287:-;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	48220193	48220955	40	-	.	ID=1052;Type=tandem-duplication;Left=chr19:48220193-48220955;Right=chr19:48548084-48548654
chr19	CG	SV	48548084	48548654	40	-	.	ID=1052;Type=tandem-duplication;Left=chr19:48220193-48220955;Right=chr19:48548084-48548654
chr19	CG	SV	48874654	48875794	43	.	.	ID=1051;Type=tandem-duplication;Left=chr19:48874654-48875206-;Right=chr19:48875492-48875794-;Distance=588;DiscordantMatePairAlignments=43;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	48874654	48875206	43	-	.	ID=1051;Type=tandem-duplication;Left=chr19:48874654-48875206;Right=chr19:48875492-48875794
chr19	CG	SV	48875492	48875794	43	-	.	ID=1051;Type=tandem-duplication;Left=chr19:48874654-48875206;Right=chr19:48875492-48875794
chr19	CG	SV	57787834	57789951	13	.	.	ID=2487;Type=deletion;Left=chr19:57787834-57788257+;Right=chr19:57789436-57789951+;Distance=1602;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=rs72196700 (chr19:57787818-57789420);Frequency=0.47
chr19	CG	SV	57787834	57788257	13	+	.	ID=2487;Type=deletion;Left=chr19:57787834-57788257;Right=chr19:57789436-57789951
chr19	CG	SV	57789436	57789951	13	+	.	ID=2487;Type=deletion;Left=chr19:57787834-57788257;Right=chr19:57789436-57789951
chr19	CG	SV	58114015	58116613	33	.	.	ID=2486;Type=deletion;Left=chr19:58114015-58114498+;Right=chr19:58116025-58116613+;Distance=2010;DiscordantMatePairAlignments=33;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chr19	CG	SV	58114015	58114498	33	+	.	ID=2486;Type=deletion;Left=chr19:58114015-58114498;Right=chr19:58116025-58116613
chr19	CG	SV	58116025	58116613	33	+	.	ID=2486;Type=deletion;Left=chr19:58114015-58114498;Right=chr19:58116025-58116613
chr19	CG	SV	58380998	58384298	122	.	.	ID=2484;Type=deletion;Left=chr19:58380998-58381317+;Right=chr19:58383780-58384298+;Distance=2782;DiscordantMatePairAlignments=122;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Self chain;Tandem T;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_024733:-;RightGenes=NM_024733:-;XRef=;Frequency=1.00
chr19	CG	SV	58380998	58381317	122	+	.	ID=2484;Type=deletion;Left=chr19:58380998-58381317;Right=chr19:58383780-58384298
chr19	CG	SV	58383780	58384298	122	+	.	ID=2484;Type=deletion;Left=chr19:58380998-58381317;Right=chr19:58383780-58384298
chr19	CG	SV	60296630	60297911	30	.	.	ID=2482;Type=deletion;Left=chr19:60296630-60297148+;Right=chr19:60297501-60297911+;Distance=871;DiscordantMatePairAlignments=30;LeftRepeat=MSR1:Satellite:Satellite;Self chain;Tandem period 109;Tandem period 36;Tandem period 73;RightRepeat=MSR1:Satellite:Satellite;Self chain;Tandem period 109;Tandem period 36;Tandem period 73;LeftGenes=NM_017607:-;RightGenes=NM_017607:-;XRef=;Frequency=0.82
chr19	CG	SV	60296630	60297148	30	+	.	ID=2482;Type=deletion;Left=chr19:60296630-60297148;Right=chr19:60297501-60297911
chr19	CG	SV	60297501	60297911	30	+	.	ID=2482;Type=deletion;Left=chr19:60296630-60297148;Right=chr19:60297501-60297911
chr19	CG	SV	60733675	60734728	13	.	.	ID=2480;Type=deletion;Left=chr19:60733675-60734231+;Right=chr19:60734011-60734728+;Distance=336;DiscordantMatePairAlignments=13;LeftRepeat=Self chain;Tandem period 131;Tandem period 168;Tandem period 19;Tandem period 57;RightRepeat=Self chain;Tandem period 37;Tandem period 38;LeftGenes=NM_001101401:-;RightGenes=NM_001101401:-;XRef=rs71171963 (chr19:60733648-60733984);Frequency=1.00
chr19	CG	SV	60733675	60734231	13	+	.	ID=2480;Type=deletion;Left=chr19:60733675-60734231;Right=chr19:60734011-60734728
chr19	CG	SV	60734011	60734728	13	+	.	ID=2480;Type=deletion;Left=chr19:60733675-60734231;Right=chr19:60734011-60734728
chr19	CG	SV	61283195	61284287	12	.	.	ID=2479;Type=deletion;Left=chr19:61283195-61283567+;Right=chr19:61283886-61284287+;Distance=691;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;Tandem period 69;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr19	CG	SV	61283195	61283567	12	+	.	ID=2479;Type=deletion;Left=chr19:61283195-61283567;Right=chr19:61283886-61284287
chr19	CG	SV	61283886	61284287	12	+	.	ID=2479;Type=deletion;Left=chr19:61283195-61283567;Right=chr19:61283886-61284287
chr19	CG	SV	61509555	61510777	56	.	.	ID=2478;Type=deletion;Left=chr19:61509555-61509993+;Right=chr19:61510395-61510777+;Distance=840;DiscordantMatePairAlignments=56;LeftRepeat=Self chain;Tandem period 84;RightRepeat=Self chain;Tandem period 84;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr19	CG	SV	61509555	61509993	56	+	.	ID=2478;Type=deletion;Left=chr19:61509555-61509993;Right=chr19:61510395-61510777
chr19	CG	SV	61510395	61510777	56	+	.	ID=2478;Type=deletion;Left=chr19:61509555-61509993;Right=chr19:61510395-61510777
chr19	CG	SV	61558270	61562273	105	.	.	ID=2477;Type=deletion;Left=chr19:61558270-61558814+;Right=chr19:61561735-61562273+;Distance=3465;DiscordantMatePairAlignments=105;LeftRepeat=Self chain;RightRepeat=L1PA10:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs72037353 (chr19:61558270-61561735);Frequency=0.12
chr19	CG	SV	61558270	61558814	105	+	.	ID=2477;Type=deletion;Left=chr19:61558270-61558814;Right=chr19:61561735-61562273
chr19	CG	SV	61561735	61562273	105	+	.	ID=2477;Type=deletion;Left=chr19:61558270-61558814;Right=chr19:61561735-61562273
chr20	CG	SV	1337146	1339443	163	.	.	ID=2474;Type=deletion;Left=chr20:1337146-1337703+;Right=chr20:1338817-1339443+;Distance=1671;DiscordantMatePairAlignments=163;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs66897164 (chr20:1337143-1338814);Frequency=0.94
chr20	CG	SV	1337146	1337703	163	+	.	ID=2474;Type=deletion;Left=chr20:1337146-1337703;Right=chr20:1338817-1339443
chr20	CG	SV	1338817	1339443	163	+	.	ID=2474;Type=deletion;Left=chr20:1337146-1337703;Right=chr20:1338817-1339443
chr20	CG	SV	1943501	1946001	48	.	.	ID=2473;Type=deletion;Left=chr20:1943501-1944078+;Right=chr20:1945532-1946001+;Distance=2031;DiscordantMatePairAlignments=48;LeftRepeat=L1MD2:LINE:L1;RightRepeat=Tigger3(Golem):DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.15
chr20	CG	SV	1943501	1944078	48	+	.	ID=2473;Type=deletion;Left=chr20:1943501-1944078;Right=chr20:1945532-1946001
chr20	CG	SV	1945532	1946001	48	+	.	ID=2473;Type=deletion;Left=chr20:1943501-1944078;Right=chr20:1945532-1946001
chr20	CG	SV	2164834	2165103	247	.	.	ID=1048;Type=tandem-duplication;Left=chr20:2164834-2164983-;Right=chr20:2164973-2165103-;Distance=120;DiscordantMatePairAlignments=247;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr20	CG	SV	2164834	2164983	247	-	.	ID=1048;Type=tandem-duplication;Left=chr20:2164834-2164983;Right=chr20:2164973-2165103
chr20	CG	SV	2164973	2165103	247	-	.	ID=1048;Type=tandem-duplication;Left=chr20:2164834-2164983;Right=chr20:2164973-2165103
chr20	CG	SV	2307559	2308614	24	.	.	ID=1047;Type=distal-duplication;Left=chr20:2307559-2307701-;Right=chr20:2308071-2308614-;Distance=913;DiscordantMatePairAlignments=24;LeftRepeat=MIR3:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chr20	CG	SV	2307559	2307701	24	-	.	ID=1047;Type=distal-duplication;Left=chr20:2307559-2307701;Right=chr20:2308071-2308614
chr20	CG	SV	2308071	2308614	24	-	.	ID=1047;Type=distal-duplication;Left=chr20:2307559-2307701;Right=chr20:2308071-2308614
chr20	CG	SV	2307903	2309138	60	.	.	ID=2472;Type=distal-duplication;Left=chr20:2307903-2308104+;Right=chr20:2308608-2309138+;Distance=705;DiscordantMatePairAlignments=60;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67473611 (chr20:2307903-2308608);Frequency=0.76
chr20	CG	SV	2307903	2308104	60	+	.	ID=2472;Type=distal-duplication;Left=chr20:2307903-2308104;Right=chr20:2308608-2309138
chr20	CG	SV	2308608	2309138	60	+	.	ID=2472;Type=distal-duplication;Left=chr20:2307903-2308104;Right=chr20:2308608-2309138
chr20	CG	SV	4879297	4920539	70	.	.	ID=2466;Type=deletion;Left=chr20:4879297-4879982+;Right=chr20:4919975-4920539+;Distance=40678;DiscordantMatePairAlignments=70;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=NM_005116:-;NM_203327:-;RightGenes=NM_005116:-;NM_203327:-;XRef=;Frequency=0.00
chr20	CG	SV	4879297	4879982	70	+	.	ID=2466;Type=deletion;Left=chr20:4879297-4879982;Right=chr20:4919975-4920539
chr20	CG	SV	4919975	4920539	70	+	.	ID=2466;Type=deletion;Left=chr20:4879297-4879982;Right=chr20:4919975-4920539
chr20	CG	SV	6098959	6099857	10	.	.	ID=2465;Type=deletion;Left=chr20:6098959-6099874+;Right=chr20:6099291-6099857+;Distance=332;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs33942407 (chr20:6098945-6099277);Frequency=0.88
chr20	CG	SV	6098959	6099874	10	+	.	ID=2465;Type=deletion;Left=chr20:6098959-6099874;Right=chr20:6099291-6099857
chr20	CG	SV	6099291	6099857	10	+	.	ID=2465;Type=deletion;Left=chr20:6098959-6099874;Right=chr20:6099291-6099857
chr20	CG	SV	7044790	7051382	125	.	.	ID=2464;Type=deletion;Left=chr20:7044790-7045389+;Right=chr20:7050855-7051382+;Distance=6065;DiscordantMatePairAlignments=125;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71813425 (chr20:7044781-7050846);Frequency=0.35
chr20	CG	SV	7044790	7045389	125	+	.	ID=2464;Type=deletion;Left=chr20:7044790-7045389;Right=chr20:7050855-7051382
chr20	CG	SV	7050855	7051382	125	+	.	ID=2464;Type=deletion;Left=chr20:7044790-7045389;Right=chr20:7050855-7051382
chr20	CG	SV	9115210	9237389	113	.	.	ID=2459;Type=deletion;Left=chr20:9115210-9115752+;Right=chr20:9236871-9237389+;Distance=121661;DiscordantMatePairAlignments=113;LeftRepeat=;RightRepeat=;LeftGenes=NM_000933:+;NM_182797:+;RightGenes=NM_000933:+;NM_182797:+;XRef=;Frequency=0.00
chr20	CG	SV	9115210	9115752	113	+	.	ID=2459;Type=deletion;Left=chr20:9115210-9115752;Right=chr20:9236871-9237389
chr20	CG	SV	9236871	9237389	113	+	.	ID=2459;Type=deletion;Left=chr20:9115210-9115752;Right=chr20:9236871-9237389
chr20	CG	SV	10735369	10737736	29	.	.	ID=69;Type=probable-inversion;Left=chr20:10735369-10736059-;Right=chr20:10737487-10737736+;Distance=1428;DiscordantMatePairAlignments=29;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr20	CG	SV	10735369	10736059	29	-	.	ID=69;Type=probable-inversion;Left=chr20:10735369-10736059;Right=chr20:10737487-10737736
chr20	CG	SV	10737487	10737736	29	-	.	ID=69;Type=probable-inversion;Left=chr20:10735369-10736059;Right=chr20:10737487-10737736
chr20	CG	SV	14651687	14908891	67	.	.	ID=2455;Type=deletion;Left=chr20:14651687-14652228+;Right=chr20:14908280-14908891+;Distance=256593;DiscordantMatePairAlignments=67;LeftRepeat=;RightRepeat=;LeftGenes=NM_080676:+;RightGenes=NM_080676:+;XRef=;Frequency=0.00
chr20	CG	SV	14651687	14652228	67	+	.	ID=2455;Type=deletion;Left=chr20:14651687-14652228;Right=chr20:14908280-14908891
chr20	CG	SV	14908280	14908891	67	+	.	ID=2455;Type=deletion;Left=chr20:14651687-14652228;Right=chr20:14908280-14908891
chr20	CG	SV	14696547	14848496	14	.	.	ID=2453;Type=deletion;Left=chr20:14696547-14697039+;Right=chr20:14848129-14848496+;Distance=151582;DiscordantMatePairAlignments=14;LeftRepeat=L1PA7:LINE:L1;Self chain;RightRepeat=;LeftGenes=NM_080676:+;RightGenes=NM_080676:+;XRef=;Frequency=0.00
chr20	CG	SV	14696547	14697039	14	+	.	ID=2453;Type=deletion;Left=chr20:14696547-14697039;Right=chr20:14848129-14848496
chr20	CG	SV	14848129	14848496	14	+	.	ID=2453;Type=deletion;Left=chr20:14696547-14697039;Right=chr20:14848129-14848496
chr20	CG	SV	14714542	14722346	90	.	.	ID=2454;Type=deletion;Left=chr20:14714542-14715144+;Right=chr20:14721636-14722346+;Distance=7094;DiscordantMatePairAlignments=90;LeftRepeat=MLT1J:LTR:MaLR;RightRepeat=L2:LINE:L2;LeftGenes=NM_080676:+;RightGenes=NM_080676:+;XRef=;Frequency=0.00
chr20	CG	SV	14714542	14715144	90	+	.	ID=2454;Type=deletion;Left=chr20:14714542-14715144;Right=chr20:14721636-14722346
chr20	CG	SV	14721636	14722346	90	+	.	ID=2454;Type=deletion;Left=chr20:14714542-14715144;Right=chr20:14721636-14722346
chr20	CG	SV	15007016	15071077	71	.	.	ID=2451;Type=deletion;Left=chr20:15007016-15007501+;Right=chr20:15070396-15071077+;Distance=63380;DiscordantMatePairAlignments=71;LeftRepeat=;RightRepeat=;LeftGenes=NM_080676:+;RightGenes=NM_080676:+;XRef=;Frequency=0.00
chr20	CG	SV	15007016	15007501	71	+	.	ID=2451;Type=deletion;Left=chr20:15007016-15007501;Right=chr20:15070396-15071077
chr20	CG	SV	15070396	15071077	71	+	.	ID=2451;Type=deletion;Left=chr20:15007016-15007501;Right=chr20:15070396-15071077
chr20	CG	SV	15247611	15302168	46	.	.	ID=2448;Type=deletion;Left=chr20:15247611-15248199+;Right=chr20:15301668-15302168+;Distance=54057;DiscordantMatePairAlignments=46;LeftRepeat=L1MB5:LINE:L1;RightRepeat=AluJo:SINE:Alu;LeftGenes=NM_001033087:+;NM_080676:+;RightGenes=NM_001033087:+;NM_080676:+;XRef=;Frequency=0.00
chr20	CG	SV	15247611	15248199	46	+	.	ID=2448;Type=deletion;Left=chr20:15247611-15248199;Right=chr20:15301668-15302168
chr20	CG	SV	15301668	15302168	46	+	.	ID=2448;Type=deletion;Left=chr20:15247611-15248199;Right=chr20:15301668-15302168
chr20	CG	SV	15249733	15252481	155	.	.	ID=2447;Type=deletion;Left=chr20:15249733-15250325+;Right=chr20:15251770-15252481+;Distance=2037;DiscordantMatePairAlignments=155;LeftRepeat=;RightRepeat=;LeftGenes=NM_001033087:+;NM_080676:+;RightGenes=NM_001033087:+;NM_080676:+;XRef=rs71703687 (chr20:15249734-15251771);Frequency=0.47
chr20	CG	SV	15249733	15250325	155	+	.	ID=2447;Type=deletion;Left=chr20:15249733-15250325;Right=chr20:15251770-15252481
chr20	CG	SV	15251770	15252481	155	+	.	ID=2447;Type=deletion;Left=chr20:15249733-15250325;Right=chr20:15251770-15252481
chr20	CG	SV	15735950	15883876	70	.	.	ID=2446;Type=deletion;Left=chr20:15735950-15736496+;Right=chr20:15883357-15883876+;Distance=147407;DiscordantMatePairAlignments=70;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=NM_001033087:+;NM_080676:+;RightGenes=NM_001033087:+;NM_080676:+;XRef=;Frequency=0.00
chr20	CG	SV	15735950	15736496	70	+	.	ID=2446;Type=deletion;Left=chr20:15735950-15736496;Right=chr20:15883357-15883876
chr20	CG	SV	15883357	15883876	70	+	.	ID=2446;Type=deletion;Left=chr20:15735950-15736496;Right=chr20:15883357-15883876
chr20	CG	SV	19009430	19010386	14	.	.	ID=2442;Type=deletion;Left=chr20:19009430-19010105+;Right=chr20:19009743-19010386+;Distance=313;DiscordantMatePairAlignments=14;LeftRepeat=AluYa5:SINE:Alu;RightRepeat=MLT1A0:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs34277434 (chr20:19009430-19009743);Frequency=0.76
chr20	CG	SV	19009430	19010105	14	+	.	ID=2442;Type=deletion;Left=chr20:19009430-19010105;Right=chr20:19009743-19010386
chr20	CG	SV	19009743	19010386	14	+	.	ID=2442;Type=deletion;Left=chr20:19009430-19010105;Right=chr20:19009743-19010386
chr20	CG	SV	21234115	21237279	201	.	.	ID=2441;Type=deletion;Left=chr20:21234115-21234779+;Right=chr20:21236797-21237279+;Distance=2682;DiscordantMatePairAlignments=201;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_012255:+;RightGenes=NM_012255:+;XRef=rs67065922 (chr20:21234127-21236809);Frequency=0.88
chr20	CG	SV	21234115	21234779	201	+	.	ID=2441;Type=deletion;Left=chr20:21234115-21234779;Right=chr20:21236797-21237279
chr20	CG	SV	21236797	21237279	201	+	.	ID=2441;Type=deletion;Left=chr20:21234115-21234779;Right=chr20:21236797-21237279
chr20	CG	SV	26152614	26153934	11	.	.	ID=2436;Type=deletion;Left=chr20:26152614-26152973+;Right=chr20:26153372-26153934+;Distance=758;DiscordantMatePairAlignments=11;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr20	CG	SV	26152614	26152973	11	+	.	ID=2436;Type=deletion;Left=chr20:26152614-26152973;Right=chr20:26153372-26153934
chr20	CG	SV	26153372	26153934	11	+	.	ID=2436;Type=deletion;Left=chr20:26152614-26152973;Right=chr20:26153372-26153934
chr20	CG	SV	26162312	26168548	10	.	.	ID=2435;Type=deletion;Left=chr20:26162312-26162828+;Right=chr20:26168376-26168548+;Distance=6064;DiscordantMatePairAlignments=10;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chr20	CG	SV	26162312	26162828	10	+	.	ID=2435;Type=deletion;Left=chr20:26162312-26162828;Right=chr20:26168376-26168548
chr20	CG	SV	26168376	26168548	10	+	.	ID=2435;Type=deletion;Left=chr20:26162312-26162828;Right=chr20:26168376-26168548
chr20	CG	SV	28252473	28255616	161	.	.	ID=2433;Type=deletion;Left=chr20:28252473-28253072+;Right=chr20:28255075-28255616+;Distance=2602;DiscordantMatePairAlignments=161;LeftRepeat=Self chain;RightRepeat=(A)n:Simple_repeat:Simple_repeat;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chr20	CG	SV	28252473	28253072	161	+	.	ID=2433;Type=deletion;Left=chr20:28252473-28253072;Right=chr20:28255075-28255616
chr20	CG	SV	28255075	28255616	161	+	.	ID=2433;Type=deletion;Left=chr20:28252473-28253072;Right=chr20:28255075-28255616
chr20	CG	SV	32279599	32283502	251	.	.	ID=2431;Type=deletion;Left=chr20:32279599-32280097+;Right=chr20:32282896-32283502+;Distance=3297;DiscordantMatePairAlignments=251;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=;XRef=rs71190078 (chr20:32279599-32282896);Frequency=1.00
chr20	CG	SV	32279599	32280097	251	+	.	ID=2431;Type=deletion;Left=chr20:32279599-32280097;Right=chr20:32282896-32283502
chr20	CG	SV	32282896	32283502	251	+	.	ID=2431;Type=deletion;Left=chr20:32279599-32280097;Right=chr20:32282896-32283502
chr20	CG	SV	32579492	32580440	13	.	.	ID=2430;Type=deletion;Left=chr20:32579492-32580123+;Right=chr20:32579825-32580440+;Distance=333;DiscordantMatePairAlignments=13;LeftRepeat=;RightRepeat=;LeftGenes=NM_014183:+;RightGenes=NM_014183:+;XRef=rs10527720 (chr20:32579472-32579805);Frequency=0.88
chr20	CG	SV	32579492	32580123	13	+	.	ID=2430;Type=deletion;Left=chr20:32579492-32580123;Right=chr20:32579825-32580440
chr20	CG	SV	32579825	32580440	13	+	.	ID=2430;Type=deletion;Left=chr20:32579492-32580123;Right=chr20:32579825-32580440
chr20	CG	SV	32705609	32708451	24	.	.	ID=2429;Type=deletion;Left=chr20:32705609-32706181+;Right=chr20:32708034-32708451+;Distance=2425;DiscordantMatePairAlignments=24;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_080476:-;RightGenes=NM_080476:-;XRef=rs67282265 (chr20:32705520-32707945);Frequency=0.59
chr20	CG	SV	32705609	32706181	24	+	.	ID=2429;Type=deletion;Left=chr20:32705609-32706181;Right=chr20:32708034-32708451
chr20	CG	SV	32708034	32708451	24	+	.	ID=2429;Type=deletion;Left=chr20:32705609-32706181;Right=chr20:32708034-32708451
chr20	CG	SV	39339824	39341523	55	.	.	ID=2425;Type=deletion;Left=chr20:39339824-39340415+;Right=chr20:39341006-39341523+;Distance=1182;DiscordantMatePairAlignments=55;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=NM_015035:-;RightGenes=NM_015035:-;XRef=;Frequency=0.06
chr20	CG	SV	39339824	39340415	55	+	.	ID=2425;Type=deletion;Left=chr20:39339824-39340415;Right=chr20:39341006-39341523
chr20	CG	SV	39341006	39341523	55	+	.	ID=2425;Type=deletion;Left=chr20:39339824-39340415;Right=chr20:39341006-39341523
chr20	CG	SV	41458026	41459785	232	.	.	ID=2424;Type=deletion;Left=chr20:41458026-41458643+;Right=chr20:41459224-41459785+;Distance=1198;DiscordantMatePairAlignments=232;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67207892 (chr20:41458026-41459224);Frequency=0.94
chr20	CG	SV	41458026	41458643	232	+	.	ID=2424;Type=deletion;Left=chr20:41458026-41458643;Right=chr20:41459224-41459785
chr20	CG	SV	41459224	41459785	232	+	.	ID=2424;Type=deletion;Left=chr20:41458026-41458643;Right=chr20:41459224-41459785
chr20	CG	SV	41758289	41759056	152	.	.	ID=1037;Type=tandem-duplication;Left=chr20:41758289-41758552-;Right=chr20:41758537-41759056-;Distance=504;DiscordantMatePairAlignments=152;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_002466:+;RightGenes=NM_002466:+;XRef=;Frequency=1.00
chr20	CG	SV	41758289	41758552	152	-	.	ID=1037;Type=tandem-duplication;Left=chr20:41758289-41758552;Right=chr20:41758537-41759056
chr20	CG	SV	41758537	41759056	152	-	.	ID=1037;Type=tandem-duplication;Left=chr20:41758289-41758552;Right=chr20:41758537-41759056
chr20	CG	SV	43637478	43641391	42	.	.	ID=2421;Type=deletion;Left=chr20:43637478-43637881+;Right=chr20:43640716-43641391+;Distance=3238;DiscordantMatePairAlignments=42;LeftRepeat=L1M3:LINE:L1;RightRepeat=;LeftGenes=NM_130896:-;NM_181510:-;RightGenes=NM_130896:-;NM_181510:-;XRef=;Frequency=0.29
chr20	CG	SV	43637478	43637881	42	+	.	ID=2421;Type=deletion;Left=chr20:43637478-43637881;Right=chr20:43640716-43641391
chr20	CG	SV	43640716	43641391	42	+	.	ID=2421;Type=deletion;Left=chr20:43637478-43637881;Right=chr20:43640716-43641391
chr20	CG	SV	43968910	43969861	47	.	.	ID=2420;Type=deletion;Left=chr20:43968910-43969586+;Right=chr20:43969346-43969861+;Distance=436;DiscordantMatePairAlignments=47;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_006227:-;NM_182676:-;RightGenes=NM_006227:-;NM_182676:-;XRef=rs66756829 (chr20:43968879-43969315);Frequency=0.88
chr20	CG	SV	43968910	43969586	47	+	.	ID=2420;Type=deletion;Left=chr20:43968910-43969586;Right=chr20:43969346-43969861
chr20	CG	SV	43969346	43969861	47	+	.	ID=2420;Type=deletion;Left=chr20:43968910-43969586;Right=chr20:43969346-43969861
chr20	CG	SV	46808827	46811629	41	.	.	ID=2419;Type=deletion;Left=chr20:46808827-46809425+;Right=chr20:46811243-46811629+;Distance=2416;DiscordantMatePairAlignments=41;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_020820:-;RightGenes=NM_020820:-;XRef=;Frequency=0.00
chr20	CG	SV	46808827	46809425	41	+	.	ID=2419;Type=deletion;Left=chr20:46808827-46809425;Right=chr20:46811243-46811629
chr20	CG	SV	46811243	46811629	41	+	.	ID=2419;Type=deletion;Left=chr20:46808827-46809425;Right=chr20:46811243-46811629
chr20	CG	SV	50192804	50194810	30	.	.	ID=2418;Type=deletion;Left=chr20:50192804-50193256+;Right=chr20:50194546-50194810+;Distance=1742;DiscordantMatePairAlignments=30;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSc:SINE:Alu;LeftGenes=NM_199427:-;RightGenes=NM_199427:-;XRef=rs71788895 (chr20:50192597-50194335);Frequency=0.76
chr20	CG	SV	50192804	50193256	30	+	.	ID=2418;Type=deletion;Left=chr20:50192804-50193256;Right=chr20:50194546-50194810
chr20	CG	SV	50194546	50194810	30	+	.	ID=2418;Type=deletion;Left=chr20:50192804-50193256;Right=chr20:50194546-50194810
chr20	CG	SV	52080477	52091957	73	.	.	ID=2417;Type=deletion;Left=chr20:52080477-52081225+;Right=chr20:52091415-52091957+;Distance=10938;DiscordantMatePairAlignments=73;LeftRepeat=;RightRepeat=L1MC4a:LINE:L1;LeftGenes=NM_003657:-;RightGenes=NM_003657:-;XRef=;Frequency=0.29
chr20	CG	SV	52080477	52081225	73	+	.	ID=2417;Type=deletion;Left=chr20:52080477-52081225;Right=chr20:52091415-52091957
chr20	CG	SV	52091415	52091957	73	+	.	ID=2417;Type=deletion;Left=chr20:52080477-52081225;Right=chr20:52091415-52091957
chr20	CG	SV	53868030	53874659	225	.	.	ID=2414;Type=deletion;Left=chr20:53868030-53868616+;Right=chr20:53874036-53874659+;Distance=6006;DiscordantMatePairAlignments=225;LeftRepeat=L1HS:LINE:L1;RightRepeat=MLT1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=rs71190099 (chr20:53868030-53874036);Frequency=0.94
chr20	CG	SV	53868030	53868616	225	+	.	ID=2414;Type=deletion;Left=chr20:53868030-53868616;Right=chr20:53874036-53874659
chr20	CG	SV	53874036	53874659	225	+	.	ID=2414;Type=deletion;Left=chr20:53868030-53868616;Right=chr20:53874036-53874659
chr20	CG	SV	55512726	55514424	54	.	.	ID=2412;Type=deletion;Left=chr20:55512726-55513360+;Right=chr20:55514006-55514424+;Distance=1280;DiscordantMatePairAlignments=54;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_080618:-;RightGenes=NM_080618:-;XRef=;Frequency=0.18
chr20	CG	SV	55512726	55513360	54	+	.	ID=2412;Type=deletion;Left=chr20:55512726-55513360;Right=chr20:55514006-55514424
chr20	CG	SV	55514006	55514424	54	+	.	ID=2412;Type=deletion;Left=chr20:55512726-55513360;Right=chr20:55514006-55514424
chr20	CG	SV	58545071	58558847	44	.	.	ID=2408;Type=deletion;Left=chr20:58545071-58545623+;Right=chr20:58558265-58558847+;Distance=13194;DiscordantMatePairAlignments=44;LeftRepeat=AluSq:SINE:Alu;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr20	CG	SV	58545071	58545623	44	+	.	ID=2408;Type=deletion;Left=chr20:58545071-58545623;Right=chr20:58558265-58558847
chr20	CG	SV	58558265	58558847	44	+	.	ID=2408;Type=deletion;Left=chr20:58545071-58545623;Right=chr20:58558265-58558847
chr20	CG	SV	61195143	61196694	247	.	.	ID=2405;Type=deletion;Left=chr20:61195143-61195815+;Right=chr20:61196042-61196694+;Distance=899;DiscordantMatePairAlignments=247;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67749901 (chr20:61195143-61196041);Frequency=1.00
chr20	CG	SV	61195143	61195815	247	+	.	ID=2405;Type=deletion;Left=chr20:61195143-61195815;Right=chr20:61196042-61196694
chr20	CG	SV	61196042	61196694	247	+	.	ID=2405;Type=deletion;Left=chr20:61195143-61195815;Right=chr20:61196042-61196694
chr20	CG	SV	61738152	61738913	13	.	.	ID=2404;Type=deletion;Left=chr20:61738152-61738705+;Right=chr20:61738663-61738913+;Distance=511;DiscordantMatePairAlignments=13;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chr20	CG	SV	61738152	61738705	13	+	.	ID=2404;Type=deletion;Left=chr20:61738152-61738705;Right=chr20:61738663-61738913
chr20	CG	SV	61738663	61738913	13	+	.	ID=2404;Type=deletion;Left=chr20:61738152-61738705;Right=chr20:61738663-61738913
chr20	CG	SV	61862538	61863306	61	.	.	ID=2402;Type=deletion;Left=chr20:61862538-61863237+;Right=chr20:61863080-61863306+;Distance=542;DiscordantMatePairAlignments=61;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_025224:-;RightGenes=NM_025224:-;XRef=;Frequency=0.00
chr20	CG	SV	61862538	61863237	61	+	.	ID=2402;Type=deletion;Left=chr20:61862538-61863237;Right=chr20:61863080-61863306
chr20	CG	SV	61863080	61863306	61	+	.	ID=2402;Type=deletion;Left=chr20:61862538-61863237;Right=chr20:61863080-61863306
chr20	CG	SV	62066706	62068530	202	.	.	ID=2400;Type=deletion;Left=chr20:62066706-62067289+;Right=chr20:62067940-62068530+;Distance=1234;DiscordantMatePairAlignments=202;LeftRepeat=Self chain;Tandem period 43;RightRepeat=Self chain;Tandem period 43;LeftGenes=NM_020713:-;RightGenes=NM_020713:-;XRef=;Frequency=0.65
chr20	CG	SV	62066706	62067289	202	+	.	ID=2400;Type=deletion;Left=chr20:62066706-62067289;Right=chr20:62067940-62068530
chr20	CG	SV	62067940	62068530	202	+	.	ID=2400;Type=deletion;Left=chr20:62066706-62067289;Right=chr20:62067940-62068530
chr21	CG	SV	10058041	10059090	19	.	.	ID=2363;Type=deletion;Left=chr21:10058041-10058548+;Right=chr21:10058608-10059090+;Distance=567;DiscordantMatePairAlignments=19;LeftRepeat=MER33:DNA:MER1_type;SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_181704:-;NM_182481:-;NM_182482:-;NM_182484:-;RightGenes=NM_181704:-;NM_182481:-;NM_182482:-;NM_182484:-;XRef=;Frequency=0.88
chr21	CG	SV	10058041	10058548	19	+	.	ID=2363;Type=deletion;Left=chr21:10058041-10058548;Right=chr21:10058608-10059090
chr21	CG	SV	10058608	10059090	19	+	.	ID=2363;Type=deletion;Left=chr21:10058041-10058548;Right=chr21:10058608-10059090
chr21	CG	SV	10111765	10114939	10	.	.	ID=2362;Type=deletion;Left=chr21:10111765-10112153+;Right=chr21:10114519-10114939+;Distance=2754;DiscordantMatePairAlignments=10;LeftRepeat=AluSp:SINE:Alu;SegDup;Self chain;RightRepeat=AluSg:SINE:Alu;SegDup;Self chain;LeftGenes=NM_001187:-;NM_181704:-;NM_182481:-;NM_182482:-;NM_182484:-;RightGenes=NM_001187:-;NM_181704:-;NM_182481:-;NM_182482:-;NM_182484:-;XRef=;Frequency=0.65
chr21	CG	SV	10111765	10112153	10	+	.	ID=2362;Type=deletion;Left=chr21:10111765-10112153;Right=chr21:10114519-10114939
chr21	CG	SV	10114519	10114939	10	+	.	ID=2362;Type=deletion;Left=chr21:10111765-10112153;Right=chr21:10114519-10114939
chr21	CG	SV	10155246	10160589	10	.	.	ID=2360;Type=deletion;Left=chr21:10155246-10155678+;Right=chr21:10160389-10160589+;Distance=5143;DiscordantMatePairAlignments=10;LeftRepeat=GA-rich:Low_complexity:Low_complexity;SegDup;Self chain;Tandem GA;RightRepeat=AluJb:SINE:Alu;SegDup;Self chain;Tandem period 337;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr21	CG	SV	10155246	10155678	10	+	.	ID=2360;Type=deletion;Left=chr21:10155246-10155678;Right=chr21:10160389-10160589
chr21	CG	SV	10160389	10160589	10	+	.	ID=2360;Type=deletion;Left=chr21:10155246-10155678;Right=chr21:10160389-10160589
chr21	CG	SV	17534203	17536099	12	.	.	ID=2358;Type=deletion;Left=chr21:17534203-17534745+;Right=chr21:17535507-17536099+;Distance=1304;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=L1PA7:LINE:L1;Tandem period 27;LeftGenes=;RightGenes=;XRef=rs71781010 (chr21:17534203-17535507);Frequency=0.76
chr21	CG	SV	17534203	17534745	12	+	.	ID=2358;Type=deletion;Left=chr21:17534203-17534745;Right=chr21:17535507-17536099
chr21	CG	SV	17535507	17536099	12	+	.	ID=2358;Type=deletion;Left=chr21:17534203-17534745;Right=chr21:17535507-17536099
chr21	CG	SV	18248696	18251738	155	.	.	ID=2357;Type=deletion;Left=chr21:18248696-18249185+;Right=chr21:18251205-18251738+;Distance=2509;DiscordantMatePairAlignments=155;LeftRepeat=MLT2B1:LTR:ERVL;RightRepeat=MLT2B1:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr21	CG	SV	18248696	18249185	155	+	.	ID=2357;Type=deletion;Left=chr21:18248696-18249185;Right=chr21:18251205-18251738
chr21	CG	SV	18251205	18251738	155	+	.	ID=2357;Type=deletion;Left=chr21:18248696-18249185;Right=chr21:18251205-18251738
chr21	CG	SV	22548076	28215431	38	.	.	ID=5135;Type=probable-inversion;Left=chr21:22548076-22548555+;Right=chr21:28214993-28215431-;Distance=5667355;DiscordantMatePairAlignments=38;LeftRepeat=MLT1H-int:LTR:MaLR;RightRepeat=SegDup;Self chain;THE1D:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chr21	CG	SV	22548076	22548555	38	+	.	ID=5135;Type=probable-inversion;Left=chr21:22548076-22548555;Right=chr21:28214993-28215431
chr21	CG	SV	28214993	28215431	38	+	.	ID=5135;Type=probable-inversion;Left=chr21:22548076-22548555;Right=chr21:28214993-28215431
chr21	CG	SV	23296667	23297982	53	.	.	ID=2353;Type=deletion;Left=chr21:23296667-23297220+;Right=chr21:23297282-23297982+;Distance=615;DiscordantMatePairAlignments=53;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs71775386 (chr21:23296667-23297282);Frequency=0.76
chr21	CG	SV	23296667	23297220	53	+	.	ID=2353;Type=deletion;Left=chr21:23296667-23297220;Right=chr21:23297282-23297982
chr21	CG	SV	23297282	23297982	53	+	.	ID=2353;Type=deletion;Left=chr21:23296667-23297220;Right=chr21:23297282-23297982
chr21	CG	SV	24821509	24857396	31	.	.	ID=2352;Type=deletion;Left=chr21:24821509-24822116+;Right=chr21:24857083-24857396+;Distance=35574;DiscordantMatePairAlignments=31;LeftRepeat=AluY:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr21	CG	SV	24821509	24822116	31	+	.	ID=2352;Type=deletion;Left=chr21:24821509-24822116;Right=chr21:24857083-24857396
chr21	CG	SV	24857083	24857396	31	+	.	ID=2352;Type=deletion;Left=chr21:24821509-24822116;Right=chr21:24857083-24857396
chr21	CG	SV	26295480	26297248	371	.	.	ID=44;Type=inversion;Left=chr21:26295480-26296024-;Right=chr21:26296575-26297248+;Distance=551;DiscordantMatePairAlignments=371;LeftRepeat=;RightRepeat=;LeftGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;RightGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;XRef=;Frequency=1.00
chr21	CG	SV	26295480	26296024	371	-	.	ID=44;Type=inversion;Left=chr21:26295480-26296024;Right=chr21:26296575-26297248
chr21	CG	SV	26296575	26297248	371	-	.	ID=44;Type=inversion;Left=chr21:26295480-26296024;Right=chr21:26296575-26297248
chr21	CG	SV	26296029	26296570	223	.	.	ID=5137;Type=inversion;Left=chr21:26296029-26296782+;Right=chr21:26296023-26296570-;Distance=541;DiscordantMatePairAlignments=223;LeftRepeat=;RightRepeat=;LeftGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;RightGenes=NM_000484:-;NM_001136129:-;NM_001136130:-;NM_201413:-;NM_201414:-;XRef=;Frequency=1.00
chr21	CG	SV	26296029	26296782	223	+	.	ID=5137;Type=inversion;Left=chr21:26296029-26296782;Right=chr21:26296023-26296570
chr21	CG	SV	26296023	26296570	223	+	.	ID=5137;Type=inversion;Left=chr21:26296029-26296782;Right=chr21:26296023-26296570
chr21	CG	SV	26941581	26944200	57	.	.	ID=43;Type=distal-duplication;Left=chr21:26941581-26942302-;Right=chr21:26943755-26944200+;Distance=1453;DiscordantMatePairAlignments=57;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	26941581	26942302	57	-	.	ID=43;Type=distal-duplication;Left=chr21:26941581-26942302;Right=chr21:26943755-26944200
chr21	CG	SV	26943755	26944200	57	-	.	ID=43;Type=distal-duplication;Left=chr21:26941581-26942302;Right=chr21:26943755-26944200
chr21	CG	SV	26942548	26943506	40	.	.	ID=5136;Type=distal-duplication;Left=chr21:26942548-26943122+;Right=chr21:26943204-26943506-;Distance=958;DiscordantMatePairAlignments=40;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	26942548	26943122	40	+	.	ID=5136;Type=distal-duplication;Left=chr21:26942548-26943122;Right=chr21:26943204-26943506
chr21	CG	SV	26943204	26943506	40	+	.	ID=5136;Type=distal-duplication;Left=chr21:26942548-26943122;Right=chr21:26943204-26943506
chr21	CG	SV	29185630	29186643	26	.	.	ID=2351;Type=deletion;Left=chr21:29185630-29186239+;Right=chr21:29186179-29186643+;Distance=549;DiscordantMatePairAlignments=26;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66547158 (chr21:29185404-29185953);Frequency=1.00
chr21	CG	SV	29185630	29186239	26	+	.	ID=2351;Type=deletion;Left=chr21:29185630-29186239;Right=chr21:29186179-29186643
chr21	CG	SV	29186179	29186643	26	+	.	ID=2351;Type=deletion;Left=chr21:29185630-29186239;Right=chr21:29186179-29186643
chr21	CG	SV	29474096	29475065	13	.	.	ID=2350;Type=deletion;Left=chr21:29474096-29474531+;Right=chr21:29474450-29475065+;Distance=354;DiscordantMatePairAlignments=13;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs71197491 (chr21:29474096-29474450);Frequency=1.00
chr21	CG	SV	29474096	29474531	13	+	.	ID=2350;Type=deletion;Left=chr21:29474096-29474531;Right=chr21:29474450-29475065
chr21	CG	SV	29474450	29475065	13	+	.	ID=2350;Type=deletion;Left=chr21:29474096-29474531;Right=chr21:29474450-29475065
chr21	CG	SV	38403440	38404082	14	.	.	ID=2347;Type=deletion;Left=chr21:38403440-38404001+;Right=chr21:38403810-38404082+;Distance=370;DiscordantMatePairAlignments=14;LeftRepeat=Self chain;Tandem period 370;RightRepeat=Self chain;LeftGenes=NM_005867:-;RightGenes=NM_005867:-;XRef=;Frequency=1.00
chr21	CG	SV	38403440	38404001	14	+	.	ID=2347;Type=deletion;Left=chr21:38403440-38404001;Right=chr21:38403810-38404082
chr21	CG	SV	38403810	38404082	14	+	.	ID=2347;Type=deletion;Left=chr21:38403440-38404001;Right=chr21:38403810-38404082
chr21	CG	SV	38512412	38513425	10	.	.	ID=2346;Type=deletion;Left=chr21:38512412-38513194+;Right=chr21:38512758-38513425+;Distance=346;DiscordantMatePairAlignments=10;LeftRepeat=AluYa5:SINE:Alu;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs66988326 (chr21:38512396-38512742);Frequency=1.00
chr21	CG	SV	38512412	38513194	10	+	.	ID=2346;Type=deletion;Left=chr21:38512412-38513194;Right=chr21:38512758-38513425
chr21	CG	SV	38512758	38513425	10	+	.	ID=2346;Type=deletion;Left=chr21:38512412-38513194;Right=chr21:38512758-38513425
chr21	CG	SV	42099812	42100784	32	.	.	ID=2341;Type=deletion;Left=chr21:42099812-42100456+;Right=chr21:42100438-42100784+;Distance=626;DiscordantMatePairAlignments=32;LeftRepeat=(CCA)n:Simple_repeat:Simple_repeat;Tandem CAC;Tandem period 15;RightRepeat=(CCA)n:Simple_repeat:Simple_repeat;LeftGenes=NM_001040424:-;NM_022115:-;RightGenes=NM_001040424:-;NM_022115:-;XRef=;Frequency=1.00
chr21	CG	SV	42099812	42100456	32	+	.	ID=2341;Type=deletion;Left=chr21:42099812-42100456;Right=chr21:42100438-42100784
chr21	CG	SV	42100438	42100784	32	+	.	ID=2341;Type=deletion;Left=chr21:42099812-42100456;Right=chr21:42100438-42100784
chr21	CG	SV	42223191	42227113	119	.	.	ID=2340;Type=deletion;Left=chr21:42223191-42223784+;Right=chr21:42226560-42227113+;Distance=3369;DiscordantMatePairAlignments=119;LeftRepeat=LTR36:LTR:ERV1;RightRepeat=;LeftGenes=NM_015500:-;RightGenes=NM_015500:-;XRef=rs72055785 (chr21:42223185-42226554);Frequency=0.41
chr21	CG	SV	42223191	42223784	119	+	.	ID=2340;Type=deletion;Left=chr21:42223191-42223784;Right=chr21:42226560-42227113
chr21	CG	SV	42226560	42227113	119	+	.	ID=2340;Type=deletion;Left=chr21:42223191-42223784;Right=chr21:42226560-42227113
chr21	CG	SV	43794796	43798363	344	.	.	ID=2337;Type=deletion;Left=chr21:43794796-43795432+;Right=chr21:43797732-43798363+;Distance=2936;DiscordantMatePairAlignments=344;LeftRepeat=;RightRepeat=Tigger4(Zombi):DNA:MER2_type;LeftGenes=NM_007031:-;RightGenes=NM_007031:-;XRef=rs72438714 (chr21:43794796-43797732);Frequency=0.53
chr21	CG	SV	43794796	43795432	344	+	.	ID=2337;Type=deletion;Left=chr21:43794796-43795432;Right=chr21:43797732-43798363
chr21	CG	SV	43797732	43798363	344	+	.	ID=2337;Type=deletion;Left=chr21:43794796-43795432;Right=chr21:43797732-43798363
chr21	CG	SV	44443627	44445591	54	.	.	ID=2336;Type=deletion;Left=chr21:44443627-44444169+;Right=chr21:44445149-44445591+;Distance=1522;DiscordantMatePairAlignments=54;LeftRepeat=AluSq:SINE:Alu;RightRepeat=MER65B-int:LTR:ERV1;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chr21	CG	SV	44443627	44444169	54	+	.	ID=2336;Type=deletion;Left=chr21:44443627-44444169;Right=chr21:44445149-44445591
chr21	CG	SV	44445149	44445591	54	+	.	ID=2336;Type=deletion;Left=chr21:44443627-44444169;Right=chr21:44445149-44445591
chr21	CG	SV	45299277	45299463	379	.	.	ID=1001;Type=tandem-duplication;Left=chr21:45299277-45299385-;Right=chr21:45299365-45299463-;Distance=78;DiscordantMatePairAlignments=379;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chr21	CG	SV	45299277	45299385	379	-	.	ID=1001;Type=tandem-duplication;Left=chr21:45299277-45299385;Right=chr21:45299365-45299463
chr21	CG	SV	45299365	45299463	379	-	.	ID=1001;Type=tandem-duplication;Left=chr21:45299277-45299385;Right=chr21:45299365-45299463
chr21	CG	SV	46212455	46214897	95	.	.	ID=2333;Type=deletion;Left=chr21:46212455-46213141+;Right=chr21:46214158-46214897+;Distance=1703;DiscordantMatePairAlignments=95;LeftRepeat=L1MC4a:LINE:L1;Self chain;RightRepeat=MLT1B:LTR:MaLR;Self chain;LeftGenes=;RightGenes=;XRef=rs72238485 (chr21:46212457-46214160);Frequency=0.94
chr21	CG	SV	46212455	46213141	95	+	.	ID=2333;Type=deletion;Left=chr21:46212455-46213141;Right=chr21:46214158-46214897
chr21	CG	SV	46214158	46214897	95	+	.	ID=2333;Type=deletion;Left=chr21:46212455-46213141;Right=chr21:46214158-46214897
chr21	CG	SV	46481780	46483839	51	.	.	ID=2332;Type=deletion;Left=chr21:46481780-46482367+;Right=chr21:46483102-46483839+;Distance=1322;DiscordantMatePairAlignments=51;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_003906:-;NR_002776:+;RightGenes=NM_003906:-;NR_002776:+;XRef=rs72308699 (chr21:46481779-46483101);Frequency=0.35
chr21	CG	SV	46481780	46482367	51	+	.	ID=2332;Type=deletion;Left=chr21:46481780-46482367;Right=chr21:46483102-46483839
chr21	CG	SV	46483102	46483839	51	+	.	ID=2332;Type=deletion;Left=chr21:46481780-46482367;Right=chr21:46483102-46483839
chr22	CG	SV	16437882	16441160	27	.	.	ID=2328;Type=deletion;Left=chr22:16437882-16438255+;Right=chr22:16440588-16441160+;Distance=2706;DiscordantMatePairAlignments=27;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_031481:+;RightGenes=NM_031481:+;XRef=rs71187331 (chr22:16437770-16440477);Frequency=0.94
chr22	CG	SV	16437882	16438255	27	+	.	ID=2328;Type=deletion;Left=chr22:16437882-16438255;Right=chr22:16440588-16441160
chr22	CG	SV	16440588	16441160	27	+	.	ID=2328;Type=deletion;Left=chr22:16437882-16438255;Right=chr22:16440588-16441160
chr22	CG	SV	17479932	17481238	85	.	.	ID=2325;Type=deletion;Left=chr22:17479932-17480116+;Right=chr22:17480627-17481238+;Distance=695;DiscordantMatePairAlignments=85;LeftRepeat=Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_005137:-;RightGenes=NM_005137:-;XRef=;Frequency=0.47
chr22	CG	SV	17479932	17480116	85	+	.	ID=2325;Type=deletion;Left=chr22:17479932-17480116;Right=chr22:17480627-17481238
chr22	CG	SV	17480627	17481238	85	+	.	ID=2325;Type=deletion;Left=chr22:17479932-17480116;Right=chr22:17480627-17481238
chr22	CG	SV	21808551	21809991	158	.	.	ID=2323;Type=deletion;Left=chr22:21808551-21808927+;Right=chr22:21809682-21809991+;Distance=1131;DiscordantMatePairAlignments=158;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_014433:-;RightGenes=NM_014433:-;XRef=rs66466474 (chr22:21808353-21809484);Frequency=0.41
chr22	CG	SV	21808551	21808927	158	+	.	ID=2323;Type=deletion;Left=chr22:21808551-21808927;Right=chr22:21809682-21809991
chr22	CG	SV	21809682	21809991	158	+	.	ID=2323;Type=deletion;Left=chr22:21808551-21808927;Right=chr22:21809682-21809991
chr22	CG	SV	22525947	22529178	72	.	.	ID=2322;Type=deletion;Left=chr22:22525947-22526462+;Right=chr22:22528518-22529178+;Distance=2571;DiscordantMatePairAlignments=72;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67891020 (chr22:22525949-22528520);Frequency=1.00
chr22	CG	SV	22525947	22526462	72	+	.	ID=2322;Type=deletion;Left=chr22:22525947-22526462;Right=chr22:22528518-22529178
chr22	CG	SV	22528518	22529178	72	+	.	ID=2322;Type=deletion;Left=chr22:22525947-22526462;Right=chr22:22528518-22529178
chr22	CG	SV	22606436	22609436	24	.	.	ID=2321;Type=deletion;Left=chr22:22606436-22607067+;Right=chr22:22609227-22609436+;Distance=2791;DiscordantMatePairAlignments=24;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=SVA:Other:Other;SegDup;Self chain;Tandem period 156;Tandem period 40;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chr22	CG	SV	22606436	22607067	24	+	.	ID=2321;Type=deletion;Left=chr22:22606436-22607067;Right=chr22:22609227-22609436
chr22	CG	SV	22609227	22609436	24	+	.	ID=2321;Type=deletion;Left=chr22:22606436-22607067;Right=chr22:22609227-22609436
chr22	CG	SV	25498071	25500453	188	.	.	ID=2319;Type=deletion;Left=chr22:25498071-25498752+;Right=chr22:25499797-25500453+;Distance=1726;DiscordantMatePairAlignments=188;LeftRepeat=Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs67377017 (chr22:25498066-25499792);Frequency=1.00
chr22	CG	SV	25498071	25498752	188	+	.	ID=2319;Type=deletion;Left=chr22:25498071-25498752;Right=chr22:25499797-25500453
chr22	CG	SV	25499797	25500453	188	+	.	ID=2319;Type=deletion;Left=chr22:25498071-25498752;Right=chr22:25499797-25500453
chr22	CG	SV	29375468	29377152	190	.	.	ID=2317;Type=deletion;Left=chr22:29375468-29375967+;Right=chr22:29376235-29377152+;Distance=767;DiscordantMatePairAlignments=190;LeftRepeat=;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.12
chr22	CG	SV	29375468	29375967	190	+	.	ID=2317;Type=deletion;Left=chr22:29375468-29375967;Right=chr22:29376235-29377152
chr22	CG	SV	29376235	29377152	190	+	.	ID=2317;Type=deletion;Left=chr22:29375468-29375967;Right=chr22:29376235-29377152
chr22	CG	SV	31407144	31408608	33	.	.	ID=2314;Type=deletion;Left=chr22:31407144-31407221+;Right=chr22:31408023-31408608+;Distance=879;DiscordantMatePairAlignments=33;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=NM_001135774:-;NM_003490:-;NM_133633:-;RightGenes=NM_001135774:-;NM_003490:-;NM_133633:-;XRef=;Frequency=0.47
chr22	CG	SV	31407144	31407221	33	+	.	ID=2314;Type=deletion;Left=chr22:31407144-31407221;Right=chr22:31408023-31408608
chr22	CG	SV	31408023	31408608	33	+	.	ID=2314;Type=deletion;Left=chr22:31407144-31407221;Right=chr22:31408023-31408608
chr22	CG	SV	31625772	31626816	18	.	.	ID=2313;Type=deletion;Left=chr22:31625772-31626407+;Right=chr22:31626090-31626816+;Distance=318;DiscordantMatePairAlignments=18;LeftRepeat=AluYb8:SINE:Alu;RightRepeat=MIR3:SINE:MIR;LeftGenes=NM_001135774:-;NM_003490:-;NM_133633:-;RightGenes=NM_001135774:-;NM_003490:-;NM_133633:-;XRef=rs67512537 (chr22:31625772-31626090);Frequency=1.00
chr22	CG	SV	31625772	31626407	18	+	.	ID=2313;Type=deletion;Left=chr22:31625772-31626407;Right=chr22:31626090-31626816
chr22	CG	SV	31626090	31626816	18	+	.	ID=2313;Type=deletion;Left=chr22:31625772-31626407;Right=chr22:31626090-31626816
chr22	CG	SV	33975166	33976647	58	.	.	ID=2311;Type=deletion;Left=chr22:33975166-33975665+;Right=chr22:33976141-33976647+;Distance=975;DiscordantMatePairAlignments=58;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72164967 (chr22:33975164-33976139);Frequency=0.94
chr22	CG	SV	33975166	33975665	58	+	.	ID=2311;Type=deletion;Left=chr22:33975166-33975665;Right=chr22:33976141-33976647
chr22	CG	SV	33976141	33976647	58	+	.	ID=2311;Type=deletion;Left=chr22:33975166-33975665;Right=chr22:33976141-33976647
chr22	CG	SV	35473252	35478345	72	.	.	ID=2308;Type=deletion;Left=chr22:35473252-35473787+;Right=chr22:35477978-35478345+;Distance=4726;DiscordantMatePairAlignments=72;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSq:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs71819381 (chr22:35473093-35477819);Frequency=1.00
chr22	CG	SV	35473252	35473787	72	+	.	ID=2308;Type=deletion;Left=chr22:35473252-35473787;Right=chr22:35477978-35478345
chr22	CG	SV	35477978	35478345	72	+	.	ID=2308;Type=deletion;Left=chr22:35473252-35473787;Right=chr22:35477978-35478345
chr22	CG	SV	37624054	37629143	137	.	.	ID=2301;Type=deletion;Left=chr22:37624054-37624787+;Right=chr22:37628634-37629143+;Distance=4580;DiscordantMatePairAlignments=137;LeftRepeat=L1MC4a:LINE:L1;Self chain;RightRepeat=LTR38-int:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=rs66483755 (chr22:37624054-37628634);Frequency=0.35
chr22	CG	SV	37624054	37624787	137	+	.	ID=2301;Type=deletion;Left=chr22:37624054-37624787;Right=chr22:37628634-37629143
chr22	CG	SV	37628634	37629143	137	+	.	ID=2301;Type=deletion;Left=chr22:37624054-37624787;Right=chr22:37628634-37629143
chr22	CG	SV	39124197	39125648	141	.	.	ID=2297;Type=deletion;Left=chr22:39124197-39124877+;Right=chr22:39125216-39125648+;Distance=1019;DiscordantMatePairAlignments=141;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=NM_015705:+;RightGenes=NM_015705:+;XRef=;Frequency=0.47
chr22	CG	SV	39124197	39124877	141	+	.	ID=2297;Type=deletion;Left=chr22:39124197-39124877;Right=chr22:39125216-39125648
chr22	CG	SV	39125216	39125648	141	+	.	ID=2297;Type=deletion;Left=chr22:39124197-39124877;Right=chr22:39125216-39125648
chr22	CG	SV	39470070	39473071	76	.	.	ID=2296;Type=deletion;Left=chr22:39470070-39470803+;Right=chr22:39472591-39473071+;Distance=2521;DiscordantMatePairAlignments=76;LeftRepeat=(T)n:Simple_repeat:Simple_repeat;Tandem T;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chr22	CG	SV	39470070	39470803	76	+	.	ID=2296;Type=deletion;Left=chr22:39470070-39470803;Right=chr22:39472591-39473071
chr22	CG	SV	39472591	39473071	76	+	.	ID=2296;Type=deletion;Left=chr22:39470070-39470803;Right=chr22:39472591-39473071
chr22	CG	SV	41431538	41432493	116	.	.	ID=2295;Type=deletion;Left=chr22:41431538-41432226+;Right=chr22:41432290-41432493+;Distance=752;DiscordantMatePairAlignments=116;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_017436:-;RightGenes=NM_017436:-;XRef=;Frequency=0.76
chr22	CG	SV	41431538	41432226	116	+	.	ID=2295;Type=deletion;Left=chr22:41431538-41432226;Right=chr22:41432290-41432493
chr22	CG	SV	41432290	41432493	116	+	.	ID=2295;Type=deletion;Left=chr22:41431538-41432226;Right=chr22:41432290-41432493
chr22	CG	SV	42006663	42007958	101	.	.	ID=2294;Type=deletion;Left=chr22:42006663-42006951+;Right=chr22:42007438-42007958+;Distance=775;DiscordantMatePairAlignments=101;LeftRepeat=Self chain;Tandem period 121;RightRepeat=Self chain;Tandem period 121;Tandem period 47;LeftGenes=NM_173050:-;RightGenes=NM_173050:-;XRef=;Frequency=0.59
chr22	CG	SV	42006663	42006951	101	+	.	ID=2294;Type=deletion;Left=chr22:42006663-42006951;Right=chr22:42007438-42007958
chr22	CG	SV	42007438	42007958	101	+	.	ID=2294;Type=deletion;Left=chr22:42006663-42006951;Right=chr22:42007438-42007958
chr22	CG	SV	43679048	43679966	13	.	.	ID=2291;Type=deletion;Left=chr22:43679048-43679752+;Right=chr22:43679409-43679966+;Distance=361;DiscordantMatePairAlignments=13;LeftRepeat=L1MEe:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=NM_001135862:-;NM_138415:-;RightGenes=NM_001135862:-;NM_138415:-;XRef=;Frequency=0.24
chr22	CG	SV	43679048	43679752	13	+	.	ID=2291;Type=deletion;Left=chr22:43679048-43679752;Right=chr22:43679409-43679966
chr22	CG	SV	43679409	43679966	13	+	.	ID=2291;Type=deletion;Left=chr22:43679048-43679752;Right=chr22:43679409-43679966
chr22	CG	SV	47355623	47367069	14	.	.	ID=2283;Type=deletion;Left=chr22:47355623-47355890+;Right=chr22:47366753-47367069+;Distance=11130;DiscordantMatePairAlignments=14;LeftRepeat=;RightRepeat=Self chain;LeftGenes=NM_001082967:+;NM_015381:+;RightGenes=NM_001082967:+;NM_015381:+;XRef=;Frequency=0.35
chr22	CG	SV	47355623	47355890	14	+	.	ID=2283;Type=deletion;Left=chr22:47355623-47355890;Right=chr22:47366753-47367069
chr22	CG	SV	47366753	47367069	14	+	.	ID=2283;Type=deletion;Left=chr22:47355623-47355890;Right=chr22:47366753-47367069
chr22	CG	SV	47450198	47451531	116	.	.	ID=2282;Type=deletion;Left=chr22:47450198-47450883+;Right=chr22:47451018-47451531+;Distance=820;DiscordantMatePairAlignments=116;LeftRepeat=Self chain;Tandem period 41;RightRepeat=Self chain;Tandem period 41;LeftGenes=NM_001082967:+;NM_015381:+;RightGenes=NM_001082967:+;NM_015381:+;XRef=rs71194978 (chr22:47450008-47450787);Frequency=0.35
chr22	CG	SV	47450198	47450883	116	+	.	ID=2282;Type=deletion;Left=chr22:47450198-47450883;Right=chr22:47451018-47451531
chr22	CG	SV	47451018	47451531	116	+	.	ID=2282;Type=deletion;Left=chr22:47450198-47450883;Right=chr22:47451018-47451531
chr22	CG	SV	48809296	48810445	27	.	.	ID=2280;Type=deletion;Left=chr22:48809296-48809894+;Right=chr22:48809992-48810445+;Distance=696;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;Tandem period 22;Tandem period 43;RightRepeat=Self chain;Tandem period 22;Tandem period 43;LeftGenes=NM_001080447:-;RightGenes=NM_001080447:-;XRef=;Frequency=0.06
chr22	CG	SV	48809296	48809894	27	+	.	ID=2280;Type=deletion;Left=chr22:48809296-48809894;Right=chr22:48809992-48810445
chr22	CG	SV	48809992	48810445	27	+	.	ID=2280;Type=deletion;Left=chr22:48809296-48809894;Right=chr22:48809992-48810445
chrX	CG	SV	819550	820631	10	.	.	ID=2276;Type=deletion;Left=chrX:819550-820064+;Right=chrX:820052-820631+;Distance=502;DiscordantMatePairAlignments=10;LeftRepeat=CT-rich:Low_complexity:Low_complexity;Self chain;Tandem TC;Tandem period 124;RightRepeat=CT-rich:Low_complexity:Low_complexity;Self chain;Tandem TC;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chrX	CG	SV	819550	820064	10	+	.	ID=2276;Type=deletion;Left=chrX:819550-820064;Right=chrX:820052-820631
chrX	CG	SV	820052	820631	10	+	.	ID=2276;Type=deletion;Left=chrX:819550-820064;Right=chrX:820052-820631
chrX	CG	SV	1158353	1158865	11	.	.	ID=991;Type=tandem-duplication;Left=chrX:1158353-1158621-;Right=chrX:1158731-1158865-;Distance=244;DiscordantMatePairAlignments=11;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.71
chrX	CG	SV	1158353	1158621	11	-	.	ID=991;Type=tandem-duplication;Left=chrX:1158353-1158621;Right=chrX:1158731-1158865
chrX	CG	SV	1158731	1158865	11	-	.	ID=991;Type=tandem-duplication;Left=chrX:1158353-1158621;Right=chrX:1158731-1158865
chrX	CG	SV	1176109	1176739	18	.	.	ID=2275;Type=deletion;Left=chrX:1176109-1176744+;Right=chrX:1176523-1176739+;Distance=414;DiscordantMatePairAlignments=18;LeftRepeat=AluY:SINE:Alu;Self chain;Tandem period 138;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chrX	CG	SV	1176109	1176744	18	+	.	ID=2275;Type=deletion;Left=chrX:1176109-1176744;Right=chrX:1176523-1176739
chrX	CG	SV	1176523	1176739	18	+	.	ID=2275;Type=deletion;Left=chrX:1176109-1176744;Right=chrX:1176523-1176739
chrX	CG	SV	1393316	1394275	13	.	.	ID=2274;Type=deletion;Left=chrX:1393316-1393714+;Right=chrX:1393924-1394275+;Distance=608;DiscordantMatePairAlignments=13;LeftRepeat=(CACCG)n:Simple_repeat:Simple_repeat;SegDup;Self chain;Tandem period 19;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs72364093 (chrX:1393288-1393744);Frequency=0.71
chrX	CG	SV	1393316	1393714	13	+	.	ID=2274;Type=deletion;Left=chrX:1393316-1393714;Right=chrX:1393924-1394275
chrX	CG	SV	1393924	1394275	13	+	.	ID=2274;Type=deletion;Left=chrX:1393316-1393714;Right=chrX:1393924-1394275
chrX	CG	SV	1411270	1413917	14	.	.	ID=2273;Type=deletion;Left=chrX:1411270-1411464+;Right=chrX:1413443-1413917+;Distance=2173;DiscordantMatePairAlignments=14;LeftRepeat=L1PA7:LINE:L1;SegDup;Self chain;RightRepeat=AluSg/x:SINE:Alu;SegDup;Self chain;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	1411270	1411464	14	+	.	ID=2273;Type=deletion;Left=chrX:1411270-1411464;Right=chrX:1413443-1413917
chrX	CG	SV	1413443	1413917	14	+	.	ID=2273;Type=deletion;Left=chrX:1411270-1411464;Right=chrX:1413443-1413917
chrX	CG	SV	1487063	1489557	20	.	.	ID=2272;Type=deletion;Left=chrX:1487063-1487526+;Right=chrX:1489268-1489557+;Distance=2205;DiscordantMatePairAlignments=20;LeftRepeat=AluJo:SINE:Alu;SegDup;Self chain;Tandem period 105;RightRepeat=AluJo:SINE:Alu;SegDup;Self chain;Tandem period 105;LeftGenes=NM_004192:-;NR_026710:+;NR_026711:+;RightGenes=NM_004192:-;NR_026710:+;NR_026711:+;XRef=;Frequency=0.47
chrX	CG	SV	1487063	1487526	20	+	.	ID=2272;Type=deletion;Left=chrX:1487063-1487526;Right=chrX:1489268-1489557
chrX	CG	SV	1489268	1489557	20	+	.	ID=2272;Type=deletion;Left=chrX:1487063-1487526;Right=chrX:1489268-1489557
chrX	CG	SV	1715968	1720429	10	.	.	ID=2270;Type=deletion;Left=chrX:1715968-1716455+;Right=chrX:1720246-1720429+;Distance=4278;DiscordantMatePairAlignments=10;LeftRepeat=SegDup;Self chain;Tandem period 165;Tandem period 83;RightRepeat=SegDup;Self chain;Tandem period 165;Tandem period 83;LeftGenes=NM_004043:+;RightGenes=NM_004043:+;XRef=;Frequency=0.25
chrX	CG	SV	1715968	1716455	10	+	.	ID=2270;Type=deletion;Left=chrX:1715968-1716455;Right=chrX:1720246-1720429
chrX	CG	SV	1720246	1720429	10	+	.	ID=2270;Type=deletion;Left=chrX:1715968-1716455;Right=chrX:1720246-1720429
chrX	CG	SV	1780658	1781868	11	.	.	ID=2269;Type=deletion;Left=chrX:1780658-1781018+;Right=chrX:1781730-1781868+;Distance=1072;DiscordantMatePairAlignments=11;LeftRepeat=SegDup;Self chain;Tandem period 43;RightRepeat=L1MC3:LINE:L1;SegDup;Self chain;Tandem period 43;LeftGenes=;RightGenes=;XRef=rs66487877 (chrX:1780536-1781309);Frequency=0.65
chrX	CG	SV	1780658	1781018	11	+	.	ID=2269;Type=deletion;Left=chrX:1780658-1781018;Right=chrX:1781730-1781868
chrX	CG	SV	1781730	1781868	11	+	.	ID=2269;Type=deletion;Left=chrX:1780658-1781018;Right=chrX:1781730-1781868
chrX	CG	SV	1871122	1872327	86	.	.	ID=2268;Type=deletion;Left=chrX:1871122-1871833+;Right=chrX:1871721-1872327+;Distance=599;DiscordantMatePairAlignments=86;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=rs72117520 (chrX:1870931-1871530);Frequency=0.41
chrX	CG	SV	1871122	1871833	86	+	.	ID=2268;Type=deletion;Left=chrX:1871122-1871833;Right=chrX:1871721-1872327
chrX	CG	SV	1871721	1872327	86	+	.	ID=2268;Type=deletion;Left=chrX:1871122-1871833;Right=chrX:1871721-1872327
chrX	CG	SV	2302763	2305358	96	.	.	ID=2267;Type=deletion;Left=chrX:2302763-2303566+;Right=chrX:2305018-2305358+;Distance=2255;DiscordantMatePairAlignments=96;LeftRepeat=AluSp:SINE:Alu;SegDup;Self chain;RightRepeat=AluSc:SINE:Alu;SegDup;Self chain;LeftGenes=NM_145177:-;RightGenes=NM_145177:-;XRef=;Frequency=0.18
chrX	CG	SV	2302763	2303566	96	+	.	ID=2267;Type=deletion;Left=chrX:2302763-2303566;Right=chrX:2305018-2305358
chrX	CG	SV	2305018	2305358	96	+	.	ID=2267;Type=deletion;Left=chrX:2302763-2303566;Right=chrX:2305018-2305358
chrX	CG	SV	5065347	5068023	84	.	.	ID=2266;Type=deletion;Left=chrX:5065347-5065983+;Right=chrX:5067503-5068023+;Distance=2156;DiscordantMatePairAlignments=84;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67919263 (chrX:5065343-5067499);Frequency=0.94
chrX	CG	SV	5065347	5065983	84	+	.	ID=2266;Type=deletion;Left=chrX:5065347-5065983;Right=chrX:5067503-5068023
chrX	CG	SV	5067503	5068023	84	+	.	ID=2266;Type=deletion;Left=chrX:5065347-5065983;Right=chrX:5067503-5068023
chrX	CG	SV	5738568	5740795	24	.	.	ID=39;Type=probable-inversion;Left=chrX:5738568-5739124-;Right=chrX:5740611-5740795+;Distance=1487;DiscordantMatePairAlignments=24;LeftRepeat=Self chain;RightRepeat=Self chain;THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	5738568	5739124	24	-	.	ID=39;Type=probable-inversion;Left=chrX:5738568-5739124;Right=chrX:5740611-5740795
chrX	CG	SV	5740611	5740795	24	-	.	ID=39;Type=probable-inversion;Left=chrX:5738568-5739124;Right=chrX:5740611-5740795
chrX	CG	SV	7019265	7109258	103	.	.	ID=2264;Type=deletion;Left=chrX:7019265-7019778+;Right=chrX:7108602-7109258+;Distance=89337;DiscordantMatePairAlignments=103;LeftRepeat=Self chain;RightRepeat=MER1A:DNA:MER1_type;Self chain;LeftGenes=NM_001135565:-;NM_012080:-;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	7019265	7019778	103	+	.	ID=2264;Type=deletion;Left=chrX:7019265-7019778;Right=chrX:7108602-7109258
chrX	CG	SV	7108602	7109258	103	+	.	ID=2264;Type=deletion;Left=chrX:7019265-7019778;Right=chrX:7108602-7109258
chrX	CG	SV	7226561	7274944	68	.	.	ID=2262;Type=deletion;Left=chrX:7226561-7227208+;Right=chrX:7274436-7274944+;Distance=47875;DiscordantMatePairAlignments=68;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_000351:+;RightGenes=NM_000351:+;XRef=;Frequency=0.00
chrX	CG	SV	7226561	7227208	68	+	.	ID=2262;Type=deletion;Left=chrX:7226561-7227208;Right=chrX:7274436-7274944
chrX	CG	SV	7274436	7274944	68	+	.	ID=2262;Type=deletion;Left=chrX:7226561-7227208;Right=chrX:7274436-7274944
chrX	CG	SV	11863118	11869908	188	.	.	ID=2260;Type=deletion;Left=chrX:11863118-11863731+;Right=chrX:11869368-11869908+;Distance=6250;DiscordantMatePairAlignments=188;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=rs67708312 (chrX:11863106-11869356);Frequency=0.47
chrX	CG	SV	11863118	11863731	188	+	.	ID=2260;Type=deletion;Left=chrX:11863118-11863731;Right=chrX:11869368-11869908
chrX	CG	SV	11869368	11869908	188	+	.	ID=2260;Type=deletion;Left=chrX:11863118-11863731;Right=chrX:11869368-11869908
chrX	CG	SV	17430551	17431449	17	.	.	ID=2257;Type=deletion;Left=chrX:17430551-17431181+;Right=chrX:17430866-17431449+;Distance=315;DiscordantMatePairAlignments=17;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=Self chain;LeftGenes=NM_198270:+;RightGenes=NM_198270:+;XRef=rs66968754 (chrX:17430537-17430852);Frequency=0.88
chrX	CG	SV	17430551	17431181	17	+	.	ID=2257;Type=deletion;Left=chrX:17430551-17431181;Right=chrX:17430866-17431449
chrX	CG	SV	17430866	17431449	17	+	.	ID=2257;Type=deletion;Left=chrX:17430551-17431181;Right=chrX:17430866-17431449
chrX	CG	SV	26074161	40220013	80	.	.	ID=5131;Type=complex;Left=chrX:26074161-26074827+;Right=chrX:40219389-40220013-;Distance=14145852;DiscordantMatePairAlignments=80;LeftRepeat=Self chain;RightRepeat=LTR16A:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	26074161	26074827	80	+	.	ID=5131;Type=complex;Left=chrX:26074161-26074827;Right=chrX:40219389-40220013
chrX	CG	SV	40219389	40220013	80	+	.	ID=5131;Type=complex;Left=chrX:26074161-26074827;Right=chrX:40219389-40220013
chrX	CG	SV	26073591	40220662	87	.	.	ID=36;Type=complex;Left=chrX:26073591-26074169-;Right=chrX:40220026-40220662+;Distance=14145857;DiscordantMatePairAlignments=87;LeftRepeat=Self chain;RightRepeat=LTR16A:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	26073591	26074169	87	-	.	ID=36;Type=complex;Left=chrX:26073591-26074169;Right=chrX:40220026-40220662
chrX	CG	SV	40220026	40220662	87	-	.	ID=36;Type=complex;Left=chrX:26073591-26074169;Right=chrX:40220026-40220662
chrX	CG	SV	40390131	40390748	10	.	.	ID=2249;Type=deletion;Left=chrX:40390131-40390892+;Right=chrX:40390455-40390748+;Distance=324;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;Tandem T;RightRepeat=Self chain;LeftGenes=NM_144970:-;RightGenes=NM_144970:-;XRef=;Frequency=1.00
chrX	CG	SV	40390131	40390892	10	+	.	ID=2249;Type=deletion;Left=chrX:40390131-40390892;Right=chrX:40390455-40390748
chrX	CG	SV	40390455	40390748	10	+	.	ID=2249;Type=deletion;Left=chrX:40390131-40390892;Right=chrX:40390455-40390748
chrX	CG	SV	52902900	55695675	28	.	.	ID=978;Type=distal-duplication;Left=chrX:52902900-52903445-;Right=chrX:55695099-55695675-;Distance=2792230;DiscordantMatePairAlignments=28;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	52902900	52903445	28	-	.	ID=978;Type=distal-duplication;Left=chrX:52902900-52903445;Right=chrX:55695099-55695675
chrX	CG	SV	55695099	55695675	28	-	.	ID=978;Type=distal-duplication;Left=chrX:52902900-52903445;Right=chrX:55695099-55695675
chrX	CG	SV	52908844	55696281	24	.	.	ID=2232;Type=distal-duplication;Left=chrX:52908844-52909361+;Right=chrX:55695835-55696281+;Distance=2786991;DiscordantMatePairAlignments=24;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_130776:-;NM_133179:-;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	52908844	52909361	24	+	.	ID=2232;Type=distal-duplication;Left=chrX:52908844-52909361;Right=chrX:55695835-55696281
chrX	CG	SV	55695835	55696281	24	+	.	ID=2232;Type=distal-duplication;Left=chrX:52908844-52909361;Right=chrX:55695835-55696281
chrX	CG	SV	55189472	55202388	45	.	.	ID=2233;Type=deletion;Left=chrX:55189472-55189889+;Right=chrX:55202293-55202388+;Distance=12821;DiscordantMatePairAlignments=45;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001166699:-;NM_001166700:-;NM_001166701:-;NM_001166702:-;NM_001166703:-;NM_001166704:-;NM_138362:-;NR_030722:-;RightGenes=NM_001166699:-;NM_001166700:-;NM_001166701:-;NM_001166702:-;NM_001166703:-;NM_001166704:-;NM_138362:-;NR_030722:-;XRef=;Frequency=1.00
chrX	CG	SV	55189472	55189889	45	+	.	ID=2233;Type=deletion;Left=chrX:55189472-55189889;Right=chrX:55202293-55202388
chrX	CG	SV	55202293	55202388	45	+	.	ID=2233;Type=deletion;Left=chrX:55189472-55189889;Right=chrX:55202293-55202388
chrX	CG	SV	69363395	69363478	28	.	.	ID=5104;Type=probable-inversion;Left=chrX:69363395-69363703+;Right=chrX:69363393-69363478-;Distance=83;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chrX	CG	SV	69363395	69363703	28	+	.	ID=5104;Type=probable-inversion;Left=chrX:69363395-69363703;Right=chrX:69363393-69363478
chrX	CG	SV	69363393	69363478	28	+	.	ID=5104;Type=probable-inversion;Left=chrX:69363395-69363703;Right=chrX:69363393-69363478
chrX	CG	SV	73415868	73516231	136	.	.	ID=975;Type=tandem-duplication;Left=chrX:73415868-73416421-;Right=chrX:73515703-73516231-;Distance=99810;DiscordantMatePairAlignments=136;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NR_028379:-;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	73415868	73416421	136	-	.	ID=975;Type=tandem-duplication;Left=chrX:73415868-73416421;Right=chrX:73515703-73516231
chrX	CG	SV	73515703	73516231	136	-	.	ID=975;Type=tandem-duplication;Left=chrX:73415868-73416421;Right=chrX:73515703-73516231
chrX	CG	SV	77008281	77011112	37	.	.	ID=2229;Type=deletion;Left=chrX:77008281-77008826+;Right=chrX:77010767-77011112+;Distance=2486;DiscordantMatePairAlignments=37;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;SegDup;Self chain;LeftGenes=NM_032121:-;RightGenes=NM_032121:-;XRef=rs72063817 (chrX:77008123-77010604);Frequency=0.94
chrX	CG	SV	77008281	77008826	37	+	.	ID=2229;Type=deletion;Left=chrX:77008281-77008826;Right=chrX:77010767-77011112
chrX	CG	SV	77010767	77011112	37	+	.	ID=2229;Type=deletion;Left=chrX:77008281-77008826;Right=chrX:77010767-77011112
chrX	CG	SV	77583513	77584789	176	.	.	ID=2228;Type=deletion;Left=chrX:77583513-77584151+;Right=chrX:77584111-77584789+;Distance=598;DiscordantMatePairAlignments=176;LeftRepeat=Self chain;RightRepeat=HUERS-P1:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.94
chrX	CG	SV	77583513	77584151	176	+	.	ID=2228;Type=deletion;Left=chrX:77583513-77584151;Right=chrX:77584111-77584789
chrX	CG	SV	77584111	77584789	176	+	.	ID=2228;Type=deletion;Left=chrX:77583513-77584151;Right=chrX:77584111-77584789
chrX	CG	SV	78808545	78810019	10	.	.	ID=5103;Type=complex;Left=chrX:78808545-78809129+;Right=chrX:78809915-78810019-;Distance=1474;DiscordantMatePairAlignments=10;LeftRepeat=L1PA16:LINE:L1;Self chain;RightRepeat=L1PA16:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	78808545	78809129	10	+	.	ID=5103;Type=complex;Left=chrX:78808545-78809129;Right=chrX:78809915-78810019
chrX	CG	SV	78809915	78810019	10	+	.	ID=5103;Type=complex;Left=chrX:78808545-78809129;Right=chrX:78809915-78810019
chrX	CG	SV	78808545	78813125	44	.	.	ID=2226;Type=complex;Left=chrX:78808545-78808934+;Right=chrX:78812727-78813125+;Distance=4182;DiscordantMatePairAlignments=44;LeftRepeat=L1PA16:LINE:L1;Self chain;RightRepeat=L1MA1:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.82
chrX	CG	SV	78808545	78808934	44	+	.	ID=2226;Type=complex;Left=chrX:78808545-78808934;Right=chrX:78812727-78813125
chrX	CG	SV	78812727	78813125	44	+	.	ID=2226;Type=complex;Left=chrX:78808545-78808934;Right=chrX:78812727-78813125
chrX	CG	SV	78833104	78836066	28	.	.	ID=2225;Type=deletion;Left=chrX:78833104-78833650+;Right=chrX:78835492-78836066+;Distance=2388;DiscordantMatePairAlignments=28;LeftRepeat=Self chain;RightRepeat=L1PA7:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=rs67757067 (chrX:78833104-78835491);Frequency=0.41
chrX	CG	SV	78833104	78833650	28	+	.	ID=2225;Type=deletion;Left=chrX:78833104-78833650;Right=chrX:78835492-78836066
chrX	CG	SV	78835492	78836066	28	+	.	ID=2225;Type=deletion;Left=chrX:78833104-78833650;Right=chrX:78835492-78836066
chrX	CG	SV	80929159	80930219	34	.	.	ID=2224;Type=deletion;Left=chrX:80929159-80929545+;Right=chrX:80929739-80930219+;Distance=580;DiscordantMatePairAlignments=34;LeftRepeat=Self chain;THE1B-int:LTR:MaLR;RightRepeat=Self chain;THE1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	80929159	80929545	34	+	.	ID=2224;Type=deletion;Left=chrX:80929159-80929545;Right=chrX:80929739-80930219
chrX	CG	SV	80929739	80930219	34	+	.	ID=2224;Type=deletion;Left=chrX:80929159-80929545;Right=chrX:80929739-80930219
chrX	CG	SV	80983299	80989874	97	.	.	ID=2223;Type=deletion;Left=chrX:80983299-80983906+;Right=chrX:80989350-80989874+;Distance=6051;DiscordantMatePairAlignments=97;LeftRepeat=L1MC3:LINE:L1;Self chain;RightRepeat=L1MC3:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	80983299	80983906	97	+	.	ID=2223;Type=deletion;Left=chrX:80983299-80983906;Right=chrX:80989350-80989874
chrX	CG	SV	80989350	80989874	97	+	.	ID=2223;Type=deletion;Left=chrX:80983299-80983906;Right=chrX:80989350-80989874
chrX	CG	SV	81869289	81875319	22	.	.	ID=2222;Type=deletion;Left=chrX:81869289-81870031+;Right=chrX:81875041-81875319+;Distance=5752;DiscordantMatePairAlignments=22;LeftRepeat=LTR7B:LTR:ERV1;Self chain;RightRepeat=LTR7B:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chrX	CG	SV	81869289	81870031	22	+	.	ID=2222;Type=deletion;Left=chrX:81869289-81870031;Right=chrX:81875041-81875319
chrX	CG	SV	81875041	81875319	22	+	.	ID=2222;Type=deletion;Left=chrX:81869289-81870031;Right=chrX:81875041-81875319
chrX	CG	SV	85491829	85496969	76	.	.	ID=2220;Type=deletion;Left=chrX:85491829-85492450+;Right=chrX:85496521-85496969+;Distance=4692;DiscordantMatePairAlignments=76;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=(CAAAA)n:Simple_repeat:Simple_repeat;Self chain;Tandem AATAA;LeftGenes=NM_001139514:+;NM_001139515:+;NM_053281:+;RightGenes=NM_001139514:+;NM_001139515:+;NM_053281:+;XRef=;Frequency=0.88
chrX	CG	SV	85491829	85492450	76	+	.	ID=2220;Type=deletion;Left=chrX:85491829-85492450;Right=chrX:85496521-85496969
chrX	CG	SV	85496521	85496969	76	+	.	ID=2220;Type=deletion;Left=chrX:85491829-85492450;Right=chrX:85496521-85496969
chrX	CG	SV	86165707	86167383	87	.	.	ID=2219;Type=deletion;Left=chrX:86165707-86166182+;Right=chrX:86166792-86167383+;Distance=1085;DiscordantMatePairAlignments=87;LeftRepeat=L1P4:LINE:L1;Self chain;RightRepeat=(TA)n:Simple_repeat:Simple_repeat;Self chain;Tandem TA;Tandem period 11;Tandem period 9;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chrX	CG	SV	86165707	86166182	87	+	.	ID=2219;Type=deletion;Left=chrX:86165707-86166182;Right=chrX:86166792-86167383
chrX	CG	SV	86166792	86167383	87	+	.	ID=2219;Type=deletion;Left=chrX:86165707-86166182;Right=chrX:86166792-86167383
chrX	CG	SV	89465022	89467690	54	.	.	ID=2216;Type=deletion;Left=chrX:89465022-89465691+;Right=chrX:89467036-89467690+;Distance=2014;DiscordantMatePairAlignments=54;LeftRepeat=MLT-int:LTR:MaLR;SegDup;Self chain;RightRepeat=L1MB3:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.24
chrX	CG	SV	89465022	89465691	54	+	.	ID=2216;Type=deletion;Left=chrX:89465022-89465691;Right=chrX:89467036-89467690
chrX	CG	SV	89467036	89467690	54	+	.	ID=2216;Type=deletion;Left=chrX:89465022-89465691;Right=chrX:89467036-89467690
chrX	CG	SV	90170015	90171391	324	.	.	ID=2215;Type=deletion;Left=chrX:90170015-90170609+;Right=chrX:90170744-90171391+;Distance=729;DiscordantMatePairAlignments=324;LeftRepeat=LTR9B:LTR:ERV1;SegDup;Self chain;RightRepeat=L1MA9:LINE:L1;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.65
chrX	CG	SV	90170015	90170609	324	+	.	ID=2215;Type=deletion;Left=chrX:90170015-90170609;Right=chrX:90170744-90171391
chrX	CG	SV	90170744	90171391	324	+	.	ID=2215;Type=deletion;Left=chrX:90170015-90170609;Right=chrX:90170744-90171391
chrX	CG	SV	94937503	94938695	43	.	.	ID=2214;Type=deletion;Left=chrX:94937503-94937987+;Right=chrX:94938136-94938695+;Distance=633;DiscordantMatePairAlignments=43;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs72179039 (chrX:94937503-94938136);Frequency=0.88
chrX	CG	SV	94937503	94937987	43	+	.	ID=2214;Type=deletion;Left=chrX:94937503-94937987;Right=chrX:94938136-94938695
chrX	CG	SV	94938136	94938695	43	+	.	ID=2214;Type=deletion;Left=chrX:94937503-94937987;Right=chrX:94938136-94938695
chrX	CG	SV	96576197	96699762	56	.	.	ID=2211;Type=deletion;Left=chrX:96576197-96576775+;Right=chrX:96699308-96699762+;Distance=123111;DiscordantMatePairAlignments=56;LeftRepeat=AluSc:SINE:Alu;RightRepeat=;LeftGenes=NM_006729:+;NM_007309:+;RightGenes=NM_006729:+;XRef=;Frequency=0.00
chrX	CG	SV	96576197	96576775	56	+	.	ID=2211;Type=deletion;Left=chrX:96576197-96576775;Right=chrX:96699308-96699762
chrX	CG	SV	96699308	96699762	56	+	.	ID=2211;Type=deletion;Left=chrX:96576197-96576775;Right=chrX:96699308-96699762
chrX	CG	SV	114448780	114451176	56	.	.	ID=2207;Type=deletion;Left=chrX:114448780-114449491+;Right=chrX:114450769-114451176+;Distance=1989;DiscordantMatePairAlignments=56;LeftRepeat=AluSx:SINE:Alu;RightRepeat=L1MB2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.41
chrX	CG	SV	114448780	114449491	56	+	.	ID=2207;Type=deletion;Left=chrX:114448780-114449491;Right=chrX:114450769-114451176
chrX	CG	SV	114450769	114451176	56	+	.	ID=2207;Type=deletion;Left=chrX:114448780-114449491;Right=chrX:114450769-114451176
chrX	CG	SV	117905654	117908520	101	.	.	ID=2205;Type=deletion;Left=chrX:117905654-117906320+;Right=chrX:117907917-117908520+;Distance=2263;DiscordantMatePairAlignments=101;LeftRepeat=HERVP71A:LTR:ERV1;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	117905654	117906320	101	+	.	ID=2205;Type=deletion;Left=chrX:117905654-117906320;Right=chrX:117907917-117908520
chrX	CG	SV	117907917	117908520	101	+	.	ID=2205;Type=deletion;Left=chrX:117905654-117906320;Right=chrX:117907917-117908520
chrX	CG	SV	118758267	118761302	33	.	.	ID=2204;Type=deletion;Left=chrX:118758267-118758847+;Right=chrX:118760865-118761302+;Distance=2598;DiscordantMatePairAlignments=33;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.76
chrX	CG	SV	118758267	118758847	33	+	.	ID=2204;Type=deletion;Left=chrX:118758267-118758847;Right=chrX:118760865-118761302
chrX	CG	SV	118760865	118761302	33	+	.	ID=2204;Type=deletion;Left=chrX:118758267-118758847;Right=chrX:118760865-118761302
chrX	CG	SV	122778924	122781210	24	.	.	ID=2202;Type=deletion;Left=chrX:122778924-122779524+;Right=chrX:122780533-122781210+;Distance=1609;DiscordantMatePairAlignments=24;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=rs67250814 (chrX:122778924-122780533);Frequency=0.59
chrX	CG	SV	122778924	122779524	24	+	.	ID=2202;Type=deletion;Left=chrX:122778924-122779524;Right=chrX:122780533-122781210
chrX	CG	SV	122780533	122781210	24	+	.	ID=2202;Type=deletion;Left=chrX:122778924-122779524;Right=chrX:122780533-122781210
chrX	CG	SV	122896658	122898095	14	.	.	ID=2201;Type=deletion;Left=chrX:122896658-122896803+;Right=chrX:122897659-122898095+;Distance=1001;DiscordantMatePairAlignments=14;LeftRepeat=CT-rich:Low_complexity:Low_complexity;RightRepeat=AluSg:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	122896658	122896803	14	+	.	ID=2201;Type=deletion;Left=chrX:122896658-122896803;Right=chrX:122897659-122898095
chrX	CG	SV	122897659	122898095	14	+	.	ID=2201;Type=deletion;Left=chrX:122896658-122896803;Right=chrX:122897659-122898095
chrX	CG	SV	130832969	130836860	113	.	.	ID=2199;Type=deletion;Left=chrX:130832969-130833401+;Right=chrX:130836311-130836860+;Distance=3342;DiscordantMatePairAlignments=113;LeftRepeat=Self chain;RightRepeat=MER70-int:LTR:ERVL;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.18
chrX	CG	SV	130832969	130833401	113	+	.	ID=2199;Type=deletion;Left=chrX:130832969-130833401;Right=chrX:130836311-130836860
chrX	CG	SV	130836311	130836860	113	+	.	ID=2199;Type=deletion;Left=chrX:130832969-130833401;Right=chrX:130836311-130836860
chrX	CG	SV	131221266	131221949	35	.	.	ID=5101;Type=distal-duplication;Left=chrX:131221266-131221938+;Right=chrX:131221876-131221949-;Distance=683;DiscordantMatePairAlignments=35;LeftRepeat=MLT1B:LTR:MaLR;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	131221266	131221938	35	+	.	ID=5101;Type=distal-duplication;Left=chrX:131221266-131221938;Right=chrX:131221876-131221949
chrX	CG	SV	131221876	131221949	35	+	.	ID=5101;Type=distal-duplication;Left=chrX:131221266-131221938;Right=chrX:131221876-131221949
chrX	CG	SV	131220773	131221972	47	.	.	ID=7;Type=distal-duplication;Left=chrX:131220773-131221272-;Right=chrX:131221878-131221972+;Distance=606;DiscordantMatePairAlignments=47;LeftRepeat=;RightRepeat=MLT1B:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=0.35
chrX	CG	SV	131220773	131221272	47	-	.	ID=7;Type=distal-duplication;Left=chrX:131220773-131221272;Right=chrX:131221878-131221972
chrX	CG	SV	131221878	131221972	47	-	.	ID=7;Type=distal-duplication;Left=chrX:131220773-131221272;Right=chrX:131221878-131221972
chrX	CG	SV	133989183	133990196	12	.	.	ID=2198;Type=deletion;Left=chrX:133989183-133989800+;Right=chrX:133989734-133990196+;Distance=551;DiscordantMatePairAlignments=12;LeftRepeat=L1HS:LINE:L1;Self chain;RightRepeat=L1PB2:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chrX	CG	SV	133989183	133989800	12	+	.	ID=2198;Type=deletion;Left=chrX:133989183-133989800;Right=chrX:133989734-133990196
chrX	CG	SV	133989734	133990196	12	+	.	ID=2198;Type=deletion;Left=chrX:133989183-133989800;Right=chrX:133989734-133990196
chrX	CG	SV	134985657	134986722	16	.	.	ID=2197;Type=deletion;Left=chrX:134985657-134986005+;Right=chrX:134985988-134986722+;Distance=331;DiscordantMatePairAlignments=16;LeftRepeat=L2:LINE:L2;RightRepeat=L2:LINE:L2;Tandem A;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	134985657	134986005	16	+	.	ID=2197;Type=deletion;Left=chrX:134985657-134986005;Right=chrX:134985988-134986722
chrX	CG	SV	134985988	134986722	16	+	.	ID=2197;Type=deletion;Left=chrX:134985657-134986005;Right=chrX:134985988-134986722
chrX	CG	SV	138984537	139048575	31	.	.	ID=969;Type=tandem-duplication;Left=chrX:138984537-138985361-;Right=chrX:139048487-139048575-;Distance=63214;DiscordantMatePairAlignments=31;LeftRepeat=SegDup;Self chain;RightRepeat=SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	138984537	138985361	31	-	.	ID=969;Type=tandem-duplication;Left=chrX:138984537-138985361;Right=chrX:139048487-139048575
chrX	CG	SV	139048487	139048575	31	-	.	ID=969;Type=tandem-duplication;Left=chrX:138984537-138985361;Right=chrX:139048487-139048575
chrX	CG	SV	144229769	144232803	82	.	.	ID=2196;Type=deletion;Left=chrX:144229769-144230344+;Right=chrX:144232200-144232803+;Distance=2431;DiscordantMatePairAlignments=82;LeftRepeat=L1M1:LINE:L1;RightRepeat=MSTA:LTR:MaLR;LeftGenes=;RightGenes=;XRef=;Frequency=1.00
chrX	CG	SV	144229769	144230344	82	+	.	ID=2196;Type=deletion;Left=chrX:144229769-144230344;Right=chrX:144232200-144232803
chrX	CG	SV	144232200	144232803	82	+	.	ID=2196;Type=deletion;Left=chrX:144229769-144230344;Right=chrX:144232200-144232803
chrX	CG	SV	145750855	145752157	16	.	.	ID=685;Type=deletion;Left=chrX:145750855-145751295+;Right=chrX:145751645-145752157+;Distance=790;DiscordantMatePairAlignments=16;LeftRepeat=L1PA2:LINE:L1;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=0.47
chrX	CG	SV	145750855	145751295	16	+	.	ID=685;Type=deletion;Left=chrX:145750855-145751295;Right=chrX:145751645-145752157
chrX	CG	SV	145751645	145752157	16	+	.	ID=685;Type=deletion;Left=chrX:145750855-145751295;Right=chrX:145751645-145752157
chrX	CG	SV	147317388	147319216	206	.	.	ID=684;Type=deletion;Left=chrX:147317388-147318137+;Right=chrX:147318927-147319216+;Distance=1539;DiscordantMatePairAlignments=206;LeftRepeat=;RightRepeat=L2:LINE:L2;LeftGenes=;RightGenes=;XRef=rs68151473 (chrX:147317390-147318927);Frequency=0.82
chrX	CG	SV	147317388	147318137	206	+	.	ID=684;Type=deletion;Left=chrX:147317388-147318137;Right=chrX:147318927-147319216
chrX	CG	SV	147318927	147319216	206	+	.	ID=684;Type=deletion;Left=chrX:147317388-147318137;Right=chrX:147318927-147319216
chrX	CG	SV	154139109	154140805	269	.	.	ID=678;Type=deletion;Left=chrX:154139109-154139756+;Right=chrX:154140140-154140805+;Distance=1031;DiscordantMatePairAlignments=269;LeftRepeat=;RightRepeat=CT-rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	154139109	154139756	269	+	.	ID=678;Type=deletion;Left=chrX:154139109-154139756;Right=chrX:154140140-154140805
chrX	CG	SV	154140140	154140805	269	+	.	ID=678;Type=deletion;Left=chrX:154139109-154139756;Right=chrX:154140140-154140805
chrX	CG	SV	154571654	154575418	46	.	.	ID=677;Type=deletion;Left=chrX:154571654-154572045+;Right=chrX:154574919-154575418+;Distance=3265;DiscordantMatePairAlignments=46;LeftRepeat=L1PA10:LINE:L1;RightRepeat=L1MA4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.53
chrX	CG	SV	154571654	154572045	46	+	.	ID=677;Type=deletion;Left=chrX:154571654-154572045;Right=chrX:154574919-154575418
chrX	CG	SV	154574919	154575418	46	+	.	ID=677;Type=deletion;Left=chrX:154571654-154572045;Right=chrX:154574919-154575418
chrX	CG	SV	154685955	154869891	25	.	.	ID=966;Type=complex;Left=chrX:154685955-154686463-;Right=chrX:154869458-154869891-;Distance=183428;DiscordantMatePairAlignments=25;LeftRepeat=LTR14B:LTR:ERVK;Self chain;RightRepeat=LTR14B:LTR:ERVK;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.88
chrX	CG	SV	154685955	154686463	25	-	.	ID=966;Type=complex;Left=chrX:154685955-154686463;Right=chrX:154869458-154869891
chrX	CG	SV	154869458	154869891	25	-	.	ID=966;Type=complex;Left=chrX:154685955-154686463;Right=chrX:154869458-154869891
chrX	CG	SV	154686647	154867392	12	.	.	ID=676;Type=complex;Left=chrX:154686647-154687350+;Right=chrX:154867249-154867392+;Distance=180602;DiscordantMatePairAlignments=12;LeftRepeat=LTR14B:LTR:ERVK;Self chain;Tandem period 17;RightRepeat=LTR14B:LTR:ERVK;SegDup;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.59
chrX	CG	SV	154686647	154687350	12	+	.	ID=676;Type=complex;Left=chrX:154686647-154687350;Right=chrX:154867249-154867392
chrX	CG	SV	154867249	154867392	12	+	.	ID=676;Type=complex;Left=chrX:154686647-154687350;Right=chrX:154867249-154867392
chrM	CG	SV	16125	16512	11	-	.	ID=964;Type=tandem-duplication;Left=chrM:-11-481;Right=chrM:16125-16512