chr1	CG	SV	5943284	5949000	43	.	.	ID=4728;Type=deletion;Left=chr1:5943284-5943662+;Right=chr1:5948663-5949000+;Distance=5379;DiscordantMatePairAlignments=43;LeftRepeat=Self chain;RightRepeat=MER72:LTR:ERV1;Self chain;LeftGenes=NM_015102:-;RightGenes=NM_015102:-;XRef=;Frequency=0.00
chr1	CG	SV	5943284	5943662	43	+	.	ID=4728;Type=deletion;Left=chr1:5943284-5943662;Right=chr1:5948663-5949000
chr1	CG	SV	5948663	5949000	43	+	.	ID=4728;Type=deletion;Left=chr1:5943284-5943662;Right=chr1:5948663-5949000
chr1	CG	SV	31171979	31173046	25	.	.	ID=4718;Type=deletion;Left=chr1:31171979-31172315+;Right=chr1:31172691-31173046+;Distance=712;DiscordantMatePairAlignments=25;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	31171979	31172315	25	+	.	ID=4718;Type=deletion;Left=chr1:31171979-31172315;Right=chr1:31172691-31173046
chr1	CG	SV	31172691	31173046	25	+	.	ID=4718;Type=deletion;Left=chr1:31171979-31172315;Right=chr1:31172691-31173046
chr1	CG	SV	32965975	32968851	19	.	.	ID=1578;Type=tandem-duplication;Left=chr1:32965975-32966449-;Right=chr1:32968327-32968851-;Distance=2402;DiscordantMatePairAlignments=19;LeftRepeat=AluSp:SINE:Alu;RightRepeat=AluSp:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	32965975	32966449	19	-	.	ID=1578;Type=tandem-duplication;Left=chr1:32965975-32966449;Right=chr1:32968327-32968851
chr1	CG	SV	32968327	32968851	19	-	.	ID=1578;Type=tandem-duplication;Left=chr1:32965975-32966449;Right=chr1:32968327-32968851
chr1	CG	SV	33288652	33288920	48	-	.	ID=1520;Type=interchromosomal;Left=chr1:33288652-33288920-;Right=chr7:24414730-24415236-;Distance=;DiscordantMatePairAlignments=48;LeftRepeat=MLT1J:LTR:MaLR;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	24414730	24415236	48	-	.	ID=1520;Type=interchromosomal;Left=chr1:33288652-33288920-;Right=chr7:24414730-24415236-;Distance=;DiscordantMatePairAlignments=48;LeftRepeat=MLT1J:LTR:MaLR;Self chain;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	187467473	187468681	19	.	.	ID=4179;Type=deletion;Left=chr1:187467473-187467829+;Right=chr1:187468454-187468681+;Distance=981;DiscordantMatePairAlignments=19;LeftRepeat=;RightRepeat=L1P5:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	187467473	187467829	19	+	.	ID=4179;Type=deletion;Left=chr1:187467473-187467829;Right=chr1:187468454-187468681
chr1	CG	SV	187468454	187468681	19	+	.	ID=4179;Type=deletion;Left=chr1:187467473-187467829;Right=chr1:187468454-187468681
chr1	CG	SV	221270490	221270911	97	-	.	ID=499;Type=interchromosomal;Left=chr1:221270490-221270911-;Right=chr15:63333071-63333527+;Distance=;DiscordantMatePairAlignments=97;LeftRepeat=MER5B:DNA:MER1_type;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	63333071	63333527	97	-	.	ID=499;Type=interchromosomal;Left=chr1:221270490-221270911-;Right=chr15:63333071-63333527+;Distance=;DiscordantMatePairAlignments=97;LeftRepeat=MER5B:DNA:MER1_type;Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr1	CG	SV	239702746	243353657	134	.	.	ID=4915;Type=probable-inversion;Left=chr1:239702746-239703186+;Right=chr1:243353173-243353657-;Distance=3650911;DiscordantMatePairAlignments=134;LeftRepeat=L1MC2:LINE:L1;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_001143943:+;NR_026586:+;NR_026587:+;XRef=;Frequency=0.00
chr1	CG	SV	239702746	239703186	134	+	.	ID=4915;Type=probable-inversion;Left=chr1:239702746-239703186;Right=chr1:243353173-243353657
chr1	CG	SV	243353173	243353657	134	+	.	ID=4915;Type=probable-inversion;Left=chr1:239702746-239703186;Right=chr1:243353173-243353657
chr1	CG	SV	239843148	239845210	82	.	.	ID=636;Type=probable-inversion;Left=chr1:239843148-239843487-;Right=chr1:239844780-239845210+;Distance=1293;DiscordantMatePairAlignments=82;LeftRepeat=;RightRepeat=Tandem period 45;LeftGenes=NM_014322:-;RightGenes=NM_014322:-;XRef=;Frequency=0.00
chr1	CG	SV	239843148	239843487	82	-	.	ID=636;Type=probable-inversion;Left=chr1:239843148-239843487;Right=chr1:239844780-239845210
chr1	CG	SV	239844780	239845210	82	-	.	ID=636;Type=probable-inversion;Left=chr1:239843148-239843487;Right=chr1:239844780-239845210
chr2	CG	SV	33618082	33618756	115	.	.	ID=4912;Type=probable-inversion;Left=chr2:33618082-33618515+;Right=chr2:33618468-33618756-;Distance=674;DiscordantMatePairAlignments=115;LeftRepeat=;RightRepeat=;LeftGenes=NM_001139488:+;NM_015376:+;NM_170672:+;RightGenes=NM_001139488:+;NM_015376:+;NM_170672:+;XRef=;Frequency=0.10
chr2	CG	SV	33618082	33618515	115	+	.	ID=4912;Type=probable-inversion;Left=chr2:33618082-33618515;Right=chr2:33618468-33618756
chr2	CG	SV	33618468	33618756	115	+	.	ID=4912;Type=probable-inversion;Left=chr2:33618082-33618515;Right=chr2:33618468-33618756
chr2	CG	SV	42300411	42307432	10	.	.	ID=4101;Type=deletion;Left=chr2:42300411-42300822+;Right=chr2:42307151-42307432+;Distance=6740;DiscordantMatePairAlignments=10;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_001145076:+;NM_019063:+;RightGenes=NM_001145076:+;NM_019063:+;XRef=;Frequency=0.00
chr2	CG	SV	42300411	42300822	10	+	.	ID=4101;Type=deletion;Left=chr2:42300411-42300822;Right=chr2:42307151-42307432
chr2	CG	SV	42307151	42307432	10	+	.	ID=4101;Type=deletion;Left=chr2:42300411-42300822;Right=chr2:42307151-42307432
chr2	CG	SV	44337954	44345199	16	.	.	ID=4099;Type=deletion;Left=chr2:44337954-44338355+;Right=chr2:44345038-44345199+;Distance=7084;DiscordantMatePairAlignments=16;LeftRepeat=AluSx:SINE:Alu;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	44337954	44338355	16	+	.	ID=4099;Type=deletion;Left=chr2:44337954-44338355;Right=chr2:44345038-44345199
chr2	CG	SV	44345038	44345199	16	+	.	ID=4099;Type=deletion;Left=chr2:44337954-44338355;Right=chr2:44345038-44345199
chr2	CG	SV	53626037	53631700	54	.	.	ID=4092;Type=deletion;Left=chr2:53626037-53626439+;Right=chr2:53631348-53631700+;Distance=5311;DiscordantMatePairAlignments=54;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	53626037	53626439	54	+	.	ID=4092;Type=deletion;Left=chr2:53626037-53626439;Right=chr2:53631348-53631700
chr2	CG	SV	53631348	53631700	54	+	.	ID=4092;Type=deletion;Left=chr2:53626037-53626439;Right=chr2:53631348-53631700
chr2	CG	SV	62203991	62205076	12	.	.	ID=4087;Type=deletion;Left=chr2:62203991-62204361+;Right=chr2:62204784-62205076+;Distance=793;DiscordantMatePairAlignments=12;LeftRepeat=AluSg:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_152516:+;RightGenes=NM_152516:+;XRef=;Frequency=0.00
chr2	CG	SV	62203991	62204361	12	+	.	ID=4087;Type=deletion;Left=chr2:62203991-62204361;Right=chr2:62204784-62205076
chr2	CG	SV	62204784	62205076	12	+	.	ID=4087;Type=deletion;Left=chr2:62203991-62204361;Right=chr2:62204784-62205076
chr2	CG	SV	62465302	62468961	66	.	.	ID=4910;Type=probable-inversion;Left=chr2:62465302-62465646+;Right=chr2:62468552-62468961-;Distance=3659;DiscordantMatePairAlignments=66;LeftRepeat=;RightRepeat=AluJb:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	62465302	62465646	66	+	.	ID=4910;Type=probable-inversion;Left=chr2:62465302-62465646;Right=chr2:62468552-62468961
chr2	CG	SV	62468552	62468961	66	+	.	ID=4910;Type=probable-inversion;Left=chr2:62465302-62465646;Right=chr2:62468552-62468961
chr2	CG	SV	119762084	119767450	41	.	.	ID=4051;Type=deletion;Left=chr2:119762084-119762415+;Right=chr2:119767011-119767450+;Distance=4927;DiscordantMatePairAlignments=41;LeftRepeat=L1ME2:LINE:L1;RightRepeat=AluSx:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	119762084	119762415	41	+	.	ID=4051;Type=deletion;Left=chr2:119762084-119762415;Right=chr2:119767011-119767450
chr2	CG	SV	119767011	119767450	41	+	.	ID=4051;Type=deletion;Left=chr2:119762084-119762415;Right=chr2:119767011-119767450
chr2	CG	SV	141903703	142026286	16	.	.	ID=3947;Type=deletion;Left=chr2:141903703-141904097+;Right=chr2:142025961-142026286+;Distance=122258;DiscordantMatePairAlignments=16;LeftRepeat=L1PA11:LINE:L1;RightRepeat=;LeftGenes=NM_018557:-;RightGenes=NM_018557:-;XRef=;Frequency=0.00
chr2	CG	SV	141903703	141904097	16	+	.	ID=3947;Type=deletion;Left=chr2:141903703-141904097;Right=chr2:142025961-142026286
chr2	CG	SV	142025961	142026286	16	+	.	ID=3947;Type=deletion;Left=chr2:141903703-141904097;Right=chr2:142025961-142026286
chr2	CG	SV	177081925	177094907	74	.	.	ID=4848;Type=complex;Left=chr2:177081925-177082416+;Right=chr2:177094513-177094907-;Distance=12982;DiscordantMatePairAlignments=74;LeftRepeat=MLT1D:LTR:MaLR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	177081925	177082416	74	+	.	ID=4848;Type=complex;Left=chr2:177081925-177082416;Right=chr2:177094513-177094907
chr2	CG	SV	177094513	177094907	74	+	.	ID=4848;Type=complex;Left=chr2:177081925-177082416;Right=chr2:177094513-177094907
chr2	CG	SV	177085279	177094657	94	.	.	ID=578;Type=complex;Left=chr2:177085279-177085681-;Right=chr2:177094247-177094657+;Distance=8566;DiscordantMatePairAlignments=94;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	177085279	177085681	94	-	.	ID=578;Type=complex;Left=chr2:177085279-177085681;Right=chr2:177094247-177094657
chr2	CG	SV	177094247	177094657	94	-	.	ID=578;Type=complex;Left=chr2:177085279-177085681;Right=chr2:177094247-177094657
chr2	CG	SV	208798701	208806057	19	.	.	ID=3896;Type=deletion;Left=chr2:208798701-208799283+;Right=chr2:208805688-208806057+;Distance=6987;DiscordantMatePairAlignments=19;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	208798701	208799283	19	+	.	ID=3896;Type=deletion;Left=chr2:208798701-208799283;Right=chr2:208805688-208806057
chr2	CG	SV	208805688	208806057	19	+	.	ID=3896;Type=deletion;Left=chr2:208798701-208799283;Right=chr2:208805688-208806057
chr2	CG	SV	221793995	221798248	141	.	.	ID=3886;Type=deletion;Left=chr2:221793995-221794369+;Right=chr2:221797856-221798248+;Distance=3861;DiscordantMatePairAlignments=141;LeftRepeat=MIR:SINE:MIR;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr2	CG	SV	221793995	221794369	141	+	.	ID=3886;Type=deletion;Left=chr2:221793995-221794369;Right=chr2:221797856-221798248
chr2	CG	SV	221797856	221798248	141	+	.	ID=3886;Type=deletion;Left=chr2:221793995-221794369;Right=chr2:221797856-221798248
chr2	CG	SV	232809146	232938490	12	.	.	ID=3879;Type=deletion;Left=chr2:232809146-232809536+;Right=chr2:232938046-232938490+;Distance=128900;DiscordantMatePairAlignments=12;LeftRepeat=Self chain;RightRepeat=SegDup;Self chain;LeftGenes=NM_152383:+;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	232809146	232809536	12	+	.	ID=3879;Type=deletion;Left=chr2:232809146-232809536;Right=chr2:232938046-232938490
chr2	CG	SV	232938046	232938490	12	+	.	ID=3879;Type=deletion;Left=chr2:232809146-232809536;Right=chr2:232938046-232938490
chr2	CG	SV	237596582	237612453	95	.	.	ID=3876;Type=deletion;Left=chr2:237596582-237597005+;Right=chr2:237611957-237612453+;Distance=15375;DiscordantMatePairAlignments=95;LeftRepeat=AT_rich:Low_complexity:Low_complexity;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr2	CG	SV	237596582	237597005	95	+	.	ID=3876;Type=deletion;Left=chr2:237596582-237597005;Right=chr2:237611957-237612453
chr2	CG	SV	237611957	237612453	95	+	.	ID=3876;Type=deletion;Left=chr2:237596582-237597005;Right=chr2:237611957-237612453
chr3	CG	SV	76901816	76969869	60	.	.	ID=3816;Type=deletion;Left=chr3:76901816-76902240+;Right=chr3:76969495-76969869+;Distance=67679;DiscordantMatePairAlignments=60;LeftRepeat=;RightRepeat=L1MC4:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr3	CG	SV	76901816	76902240	60	+	.	ID=3816;Type=deletion;Left=chr3:76901816-76902240;Right=chr3:76969495-76969869
chr3	CG	SV	76969495	76969869	60	+	.	ID=3816;Type=deletion;Left=chr3:76901816-76902240;Right=chr3:76969495-76969869
chr3	CG	SV	197138791	197140061	12	.	.	ID=3738;Type=deletion;Left=chr3:197138791-197139233+;Right=chr3:197139764-197140061+;Distance=973;DiscordantMatePairAlignments=12;LeftRepeat=L1M5:LINE:L1;Self chain;RightRepeat=L1M5:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr3	CG	SV	197138791	197139233	12	+	.	ID=3738;Type=deletion;Left=chr3:197138791-197139233;Right=chr3:197139764-197140061
chr3	CG	SV	197139764	197140061	12	+	.	ID=3738;Type=deletion;Left=chr3:197138791-197139233;Right=chr3:197139764-197140061
chr6	CG	SV	69198887	69200221	202	.	.	ID=3226;Type=deletion;Left=chr6:69198887-69199375+;Right=chr6:69199830-69200221+;Distance=943;DiscordantMatePairAlignments=202;LeftRepeat=;RightRepeat=AT_rich:Low_complexity:Low_complexity;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr6	CG	SV	69198887	69199375	202	+	.	ID=3226;Type=deletion;Left=chr6:69198887-69199375;Right=chr6:69199830-69200221
chr6	CG	SV	69199830	69200221	202	+	.	ID=3226;Type=deletion;Left=chr6:69198887-69199375;Right=chr6:69199830-69200221
chr6	CG	SV	81112919	81115181	118	.	.	ID=3215;Type=deletion;Left=chr6:81112919-81113356+;Right=chr6:81114601-81115181+;Distance=1682;DiscordantMatePairAlignments=118;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	81112919	81113356	118	+	.	ID=3215;Type=deletion;Left=chr6:81112919-81113356;Right=chr6:81114601-81115181
chr6	CG	SV	81114601	81115181	118	+	.	ID=3215;Type=deletion;Left=chr6:81112919-81113356;Right=chr6:81114601-81115181
chr6	CG	SV	113534763	113538641	12	.	.	ID=3199;Type=deletion;Left=chr6:113534763-113535114+;Right=chr6:113538281-113538641+;Distance=3518;DiscordantMatePairAlignments=12;LeftRepeat=L1PA6:LINE:L1;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	113534763	113535114	12	+	.	ID=3199;Type=deletion;Left=chr6:113534763-113535114;Right=chr6:113538281-113538641
chr6	CG	SV	113538281	113538641	12	+	.	ID=3199;Type=deletion;Left=chr6:113534763-113535114;Right=chr6:113538281-113538641
chr6	CG	SV	113807653	113810220	75	.	.	ID=3198;Type=deletion;Left=chr6:113807653-113808065+;Right=chr6:113809812-113810220+;Distance=2159;DiscordantMatePairAlignments=75;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	113807653	113808065	75	+	.	ID=3198;Type=deletion;Left=chr6:113807653-113808065;Right=chr6:113809812-113810220
chr6	CG	SV	113809812	113810220	75	+	.	ID=3198;Type=deletion;Left=chr6:113807653-113808065;Right=chr6:113809812-113810220
chr6	CG	SV	146250543	146255872	11	.	.	ID=3161;Type=deletion;Left=chr6:146250543-146250885+;Right=chr6:146255759-146255872+;Distance=5216;DiscordantMatePairAlignments=11;LeftRepeat=AluSx:SINE:Alu;RightRepeat=;LeftGenes=NM_001042683:-;NM_173082:-;RightGenes=NM_001042683:-;NM_173082:-;XRef=;Frequency=0.00
chr6	CG	SV	146250543	146250885	11	+	.	ID=3161;Type=deletion;Left=chr6:146250543-146250885;Right=chr6:146255759-146255872
chr6	CG	SV	146255759	146255872	11	+	.	ID=3161;Type=deletion;Left=chr6:146250543-146250885;Right=chr6:146255759-146255872
chr6	CG	SV	165042348	165042624	38	-	.	ID=941;Type=complex;Left=chr6:165042348-165042624-;Right=chr19:54305688-54306117-;Distance=;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=FRAM:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	54305688	54306117	38	-	.	ID=941;Type=complex;Left=chr6:165042348-165042624-;Right=chr19:54305688-54306117-;Distance=;DiscordantMatePairAlignments=38;LeftRepeat=Self chain;RightRepeat=FRAM:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	168983731	168983915	10	.	.	ID=1197;Type=tandem-duplication;Left=chr6:168983731-168983816-;Right=chr6:168983826-168983915-;Distance=99;DiscordantMatePairAlignments=10;LeftRepeat=(GGATG)n:Simple_repeat:Simple_repeat;Self chain;Tandem period 19;RightRepeat=Self chain;Tandem period 19;Tandem period 20;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr6	CG	SV	168983731	168983816	10	-	.	ID=1197;Type=tandem-duplication;Left=chr6:168983731-168983816;Right=chr6:168983826-168983915
chr6	CG	SV	168983826	168983915	10	-	.	ID=1197;Type=tandem-duplication;Left=chr6:168983731-168983816;Right=chr6:168983826-168983915
chr7	CG	SV	4047791	4049213	118	.	.	ID=3131;Type=deletion;Left=chr7:4047791-4048194+;Right=chr7:4048823-4049213+;Distance=1032;DiscordantMatePairAlignments=118;LeftRepeat=L1MC1:LINE:L1;RightRepeat=;LeftGenes=NM_152744:+;RightGenes=NM_152744:+;XRef=rs72449159 (chr7:4047790-4048822);Frequency=0.06
chr7	CG	SV	4047791	4048194	118	+	.	ID=3131;Type=deletion;Left=chr7:4047791-4048194;Right=chr7:4048823-4049213
chr7	CG	SV	4048823	4049213	118	+	.	ID=3131;Type=deletion;Left=chr7:4047791-4048194;Right=chr7:4048823-4049213
chr7	CG	SV	93374204	93374268	10	.	.	ID=4538;Type=probable-inversion;Left=chr7:93374204-93374672+;Right=chr7:93374198-93374268-;Distance=64;DiscordantMatePairAlignments=10;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_021955:+;RightGenes=NM_021955:+;XRef=;Frequency=0.10
chr7	CG	SV	93374204	93374672	10	+	.	ID=4538;Type=probable-inversion;Left=chr7:93374204-93374672;Right=chr7:93374198-93374268
chr7	CG	SV	93374198	93374268	10	+	.	ID=4538;Type=probable-inversion;Left=chr7:93374204-93374672;Right=chr7:93374198-93374268
chr7	CG	SV	143468426	143475437	102	.	.	ID=3016;Type=deletion;Left=chr7:143468426-143468814+;Right=chr7:143475011-143475437+;Distance=6585;DiscordantMatePairAlignments=102;LeftRepeat=Self chain;RightRepeat=L1M3e:LINE:L1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	143468426	143468814	102	+	.	ID=3016;Type=deletion;Left=chr7:143468426-143468814;Right=chr7:143475011-143475437
chr7	CG	SV	143475011	143475437	102	+	.	ID=3016;Type=deletion;Left=chr7:143468426-143468814;Right=chr7:143475011-143475437
chr7	CG	SV	144634401	144650200	123	.	.	ID=3014;Type=deletion;Left=chr7:144634401-144634848+;Right=chr7:144649787-144650200+;Distance=15386;DiscordantMatePairAlignments=123;LeftRepeat=;RightRepeat=HERV16:LTR:ERVL;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr7	CG	SV	144634401	144634848	123	+	.	ID=3014;Type=deletion;Left=chr7:144634401-144634848;Right=chr7:144649787-144650200
chr7	CG	SV	144649787	144650200	123	+	.	ID=3014;Type=deletion;Left=chr7:144634401-144634848;Right=chr7:144649787-144650200
chr8	CG	SV	58280641	58296674	15	.	.	ID=1150;Type=tandem-duplication;Left=chr8:58280641-58280822-;Right=chr8:58296464-58296674-;Distance=15852;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.05
chr8	CG	SV	58280641	58280822	15	-	.	ID=1150;Type=tandem-duplication;Left=chr8:58280641-58280822;Right=chr8:58296464-58296674
chr8	CG	SV	58296464	58296674	15	-	.	ID=1150;Type=tandem-duplication;Left=chr8:58280641-58280822;Right=chr8:58296464-58296674
chr8	CG	SV	83347925	84877117	11	.	.	ID=4498;Type=probable-inversion;Left=chr8:83347925-83348541+;Right=chr8:84876624-84877117-;Distance=1529192;DiscordantMatePairAlignments=11;LeftRepeat=L1MA1:LINE:L1;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr8	CG	SV	83347925	83348541	11	+	.	ID=4498;Type=probable-inversion;Left=chr8:83347925-83348541;Right=chr8:84876624-84877117
chr8	CG	SV	84876624	84877117	11	+	.	ID=4498;Type=probable-inversion;Left=chr8:83347925-83348541;Right=chr8:84876624-84877117
chr8	CG	SV	143395366	143396944	20	.	.	ID=2881;Type=deletion;Left=chr8:143395366-143395696+;Right=chr8:143396564-143396944+;Distance=1198;DiscordantMatePairAlignments=20;LeftRepeat=Self chain;RightRepeat=Self chain;Tandem period 36;Tandem period 72;LeftGenes=NM_145003:-;RightGenes=NM_145003:-;XRef=;Frequency=0.00
chr8	CG	SV	143395366	143395696	20	+	.	ID=2881;Type=deletion;Left=chr8:143395366-143395696;Right=chr8:143396564-143396944
chr8	CG	SV	143396564	143396944	20	+	.	ID=2881;Type=deletion;Left=chr8:143395366-143395696;Right=chr8:143396564-143396944
chr9	CG	SV	24135482	24140648	20	.	.	ID=2858;Type=deletion;Left=chr9:24135482-24135928+;Right=chr9:24140391-24140648+;Distance=4909;DiscordantMatePairAlignments=20;LeftRepeat=;RightRepeat=L1MC:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	24135482	24135928	20	+	.	ID=2858;Type=deletion;Left=chr9:24135482-24135928;Right=chr9:24140391-24140648
chr9	CG	SV	24140391	24140648	20	+	.	ID=2858;Type=deletion;Left=chr9:24135482-24135928;Right=chr9:24140391-24140648
chr9	CG	SV	24492071	24509499	87	.	.	ID=2857;Type=deletion;Left=chr9:24492071-24492423+;Right=chr9:24509103-24509499+;Distance=17032;DiscordantMatePairAlignments=87;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr9	CG	SV	24492071	24492423	87	+	.	ID=2857;Type=deletion;Left=chr9:24492071-24492423;Right=chr9:24509103-24509499
chr9	CG	SV	24509103	24509499	87	+	.	ID=2857;Type=deletion;Left=chr9:24492071-24492423;Right=chr9:24509103-24509499
chr9	CG	SV	130402343	130405750	62	.	.	ID=2795;Type=deletion;Left=chr9:130402343-130402733+;Right=chr9:130405306-130405750+;Distance=2963;DiscordantMatePairAlignments=62;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001130438:+;NM_003127:+;RightGenes=NM_001130438:+;NM_003127:+;XRef=;Frequency=0.00
chr9	CG	SV	130402343	130402733	62	+	.	ID=2795;Type=deletion;Left=chr9:130402343-130402733;Right=chr9:130405306-130405750
chr9	CG	SV	130405306	130405750	62	+	.	ID=2795;Type=deletion;Left=chr9:130402343-130402733;Right=chr9:130405306-130405750
chr10	CG	SV	4402191	4409262	46	.	.	ID=2769;Type=deletion;Left=chr10:4402191-4402501+;Right=chr10:4408853-4409262+;Distance=6662;DiscordantMatePairAlignments=46;LeftRepeat=Self chain;RightRepeat=L1MD2:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	4402191	4402501	46	+	.	ID=2769;Type=deletion;Left=chr10:4402191-4402501;Right=chr10:4408853-4409262
chr10	CG	SV	4408853	4409262	46	+	.	ID=2769;Type=deletion;Left=chr10:4402191-4402501;Right=chr10:4408853-4409262
chr10	CG	SV	6687901	6689099	55	.	.	ID=2761;Type=deletion;Left=chr10:6687901-6688412+;Right=chr10:6688860-6689099+;Distance=959;DiscordantMatePairAlignments=55;LeftRepeat=AluY:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr10	CG	SV	6687901	6688412	55	+	.	ID=2761;Type=deletion;Left=chr10:6687901-6688412;Right=chr10:6688860-6689099
chr10	CG	SV	6688860	6689099	55	+	.	ID=2761;Type=deletion;Left=chr10:6687901-6688412;Right=chr10:6688860-6689099
chr11	CG	SV	7945362	7946717	20	.	.	ID=2664;Type=deletion;Left=chr11:7945362-7945754+;Right=chr11:7946397-7946717+;Distance=1035;DiscordantMatePairAlignments=20;LeftRepeat=L2:LINE:L2;RightRepeat=;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	7945362	7945754	20	+	.	ID=2664;Type=deletion;Left=chr11:7945362-7945754;Right=chr11:7946397-7946717
chr11	CG	SV	7946397	7946717	20	+	.	ID=2664;Type=deletion;Left=chr11:7945362-7945754;Right=chr11:7946397-7946717
chr11	CG	SV	24399729	24409233	81	.	.	ID=2653;Type=deletion;Left=chr11:24399729-24400130+;Right=chr11:24408863-24409233+;Distance=9134;DiscordantMatePairAlignments=81;LeftRepeat=;RightRepeat=MIR:SINE:MIR;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr11	CG	SV	24399729	24400130	81	+	.	ID=2653;Type=deletion;Left=chr11:24399729-24400130;Right=chr11:24408863-24409233
chr11	CG	SV	24408863	24409233	81	+	.	ID=2653;Type=deletion;Left=chr11:24399729-24400130;Right=chr11:24408863-24409233
chr11	CG	SV	58388350	58393449	37	.	.	ID=2609;Type=deletion;Left=chr11:58388350-58388738+;Right=chr11:58393131-58393449+;Distance=4781;DiscordantMatePairAlignments=37;LeftRepeat=L1M2:LINE:L1;Self chain;RightRepeat=LOR1-int:LTR:ERV1;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	58388350	58388738	37	+	.	ID=2609;Type=deletion;Left=chr11:58388350-58388738;Right=chr11:58393131-58393449
chr11	CG	SV	58393131	58393449	37	+	.	ID=2609;Type=deletion;Left=chr11:58388350-58388738;Right=chr11:58393131-58393449
chr11	CG	SV	67086873	67089301	14	.	.	ID=2603;Type=deletion;Left=chr11:67086873-67087334+;Right=chr11:67089129-67089301+;Distance=2256;DiscordantMatePairAlignments=14;LeftRepeat=AluSq:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr11	CG	SV	67086873	67087334	14	+	.	ID=2603;Type=deletion;Left=chr11:67086873-67087334;Right=chr11:67089129-67089301
chr11	CG	SV	67089129	67089301	14	+	.	ID=2603;Type=deletion;Left=chr11:67086873-67087334;Right=chr11:67089129-67089301
chr11	CG	SV	69660203	69662555	58	.	.	ID=2598;Type=deletion;Left=chr11:69660203-69660463+;Right=chr11:69662138-69662555+;Distance=1935;DiscordantMatePairAlignments=58;LeftRepeat=Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=NM_018043:+;NR_030691:+;RightGenes=NM_018043:+;NR_030691:+;XRef=;Frequency=0.06
chr11	CG	SV	69660203	69660463	58	+	.	ID=2598;Type=deletion;Left=chr11:69660203-69660463;Right=chr11:69662138-69662555
chr11	CG	SV	69662138	69662555	58	+	.	ID=2598;Type=deletion;Left=chr11:69660203-69660463;Right=chr11:69662138-69662555
chr12	CG	SV	51882260	51883074	11	.	.	ID=2516;Type=deletion;Left=chr12:51882260-51882545+;Right=chr12:51882862-51883074+;Distance=602;DiscordantMatePairAlignments=11;LeftRepeat=AluSq:SINE:Alu;RightRepeat=AluSg:SINE:Alu;LeftGenes=NM_000889:-;RightGenes=NM_000889:-;XRef=;Frequency=0.00
chr12	CG	SV	51882260	51882545	11	+	.	ID=2516;Type=deletion;Left=chr12:51882260-51882545;Right=chr12:51882862-51883074
chr12	CG	SV	51882862	51883074	11	+	.	ID=2516;Type=deletion;Left=chr12:51882260-51882545;Right=chr12:51882862-51883074
chr12	CG	SV	92028424	92029893	72	.	.	ID=2500;Type=deletion;Left=chr12:92028424-92028784+;Right=chr12:92029510-92029893+;Distance=1086;DiscordantMatePairAlignments=72;LeftRepeat=;RightRepeat=;LeftGenes=;RightGenes=;XRef=rs72391384 (chr12:92028431-92029518);Frequency=0.06
chr12	CG	SV	92028424	92028784	72	+	.	ID=2500;Type=deletion;Left=chr12:92028424-92028784;Right=chr12:92029510-92029893
chr12	CG	SV	92029510	92029893	72	+	.	ID=2500;Type=deletion;Left=chr12:92028424-92028784;Right=chr12:92029510-92029893
chr13	CG	SV	76277642	82255600	16	.	.	ID=1024;Type=tandem-duplication;Left=chr13:76277642-76278236-;Right=chr13:82255126-82255600-;Distance=5977364;DiscordantMatePairAlignments=16;LeftRepeat=AluJb:SINE:Alu;RightRepeat=Tigger2:DNA:MER2_type;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	76277642	76278236	16	-	.	ID=1024;Type=tandem-duplication;Left=chr13:76277642-76278236;Right=chr13:82255126-82255600
chr13	CG	SV	82255126	82255600	16	-	.	ID=1024;Type=tandem-duplication;Left=chr13:76277642-76278236;Right=chr13:82255126-82255600
chr13	CG	SV	77662970	77666370	132	.	.	ID=2427;Type=deletion;Left=chr13:77662970-77663406+;Right=chr13:77665838-77666370+;Distance=2868;DiscordantMatePairAlignments=132;LeftRepeat=MER21B:LTR:ERV1;RightRepeat=L1MEc:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr13	CG	SV	77662970	77663406	132	+	.	ID=2427;Type=deletion;Left=chr13:77662970-77663406;Right=chr13:77665838-77666370
chr13	CG	SV	77665838	77666370	132	+	.	ID=2427;Type=deletion;Left=chr13:77662970-77663406;Right=chr13:77665838-77666370
chr13	CG	SV	83147490	83147923	38	+	.	ID=2062;Type=interchromosomal;Left=chr13:83147490-83147923+;Right=chr19:9093770-9094177+;Distance=;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	9093770	9094177	38	+	.	ID=2062;Type=interchromosomal;Left=chr13:83147490-83147923+;Right=chr19:9093770-9094177+;Distance=;DiscordantMatePairAlignments=38;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr13	CG	SV	92042627	92044363	28	.	.	ID=2406;Type=deletion;Left=chr13:92042627-92043057+;Right=chr13:92044021-92044363+;Distance=1394;DiscordantMatePairAlignments=28;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_004466:+;RightGenes=NM_004466:+;XRef=;Frequency=0.00
chr13	CG	SV	92042627	92043057	28	+	.	ID=2406;Type=deletion;Left=chr13:92042627-92043057;Right=chr13:92044021-92044363
chr13	CG	SV	92044021	92044363	28	+	.	ID=2406;Type=deletion;Left=chr13:92042627-92043057;Right=chr13:92044021-92044363
chr13	CG	SV	96739659	96742619	17	.	.	ID=2403;Type=deletion;Left=chr13:96739659-96740031+;Right=chr13:96742213-96742619+;Distance=2554;DiscordantMatePairAlignments=17;LeftRepeat=;RightRepeat=AluY:SINE:Alu;LeftGenes=NM_144778:+;NM_207304:+;RightGenes=NM_144778:+;NM_207304:+;XRef=;Frequency=0.00
chr13	CG	SV	96739659	96740031	17	+	.	ID=2403;Type=deletion;Left=chr13:96739659-96740031;Right=chr13:96742213-96742619
chr13	CG	SV	96742213	96742619	17	+	.	ID=2403;Type=deletion;Left=chr13:96739659-96740031;Right=chr13:96742213-96742619
chr14	CG	SV	21100019	21101876	27	.	.	ID=2384;Type=deletion;Left=chr14:21100019-21100493+;Right=chr14:21101665-21101876+;Distance=1646;DiscordantMatePairAlignments=27;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluY:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.10
chr14	CG	SV	21100019	21100493	27	+	.	ID=2384;Type=deletion;Left=chr14:21100019-21100493;Right=chr14:21101665-21101876
chr14	CG	SV	21101665	21101876	27	+	.	ID=2384;Type=deletion;Left=chr14:21100019-21100493;Right=chr14:21101665-21101876
chr14	CG	SV	22122064	22123836	123	.	.	ID=2381;Type=deletion;Left=chr14:22122064-22122522+;Right=chr14:22123393-22123836+;Distance=1329;DiscordantMatePairAlignments=123;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_001344:-;RightGenes=NM_001344:-;XRef=;Frequency=0.00
chr14	CG	SV	22122064	22122522	123	+	.	ID=2381;Type=deletion;Left=chr14:22122064-22122522;Right=chr14:22123393-22123836
chr14	CG	SV	22123393	22123836	123	+	.	ID=2381;Type=deletion;Left=chr14:22122064-22122522;Right=chr14:22123393-22123836
chr15	CG	SV	38609286	38611195	47	.	.	ID=2320;Type=deletion;Left=chr15:38609286-38609774+;Right=chr15:38610947-38611195+;Distance=1661;DiscordantMatePairAlignments=47;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSg/x:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.06
chr15	CG	SV	38609286	38609774	47	+	.	ID=2320;Type=deletion;Left=chr15:38609286-38609774;Right=chr15:38610947-38611195
chr15	CG	SV	38610947	38611195	47	+	.	ID=2320;Type=deletion;Left=chr15:38609286-38609774;Right=chr15:38610947-38611195
chr15	CG	SV	99844133	100131539	107	.	.	ID=968;Type=tandem-duplication;Left=chr15:99844133-99844519-;Right=chr15:100131158-100131539-;Distance=287020;DiscordantMatePairAlignments=107;LeftRepeat=;RightRepeat=SegDup;Self chain;LeftGenes=NM_002570:-;NM_138319:-;NM_138320:-;NM_138321:-;NM_138322:-;NM_138323:-;NM_138324:-;NM_138325:-;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	99844133	99844519	107	-	.	ID=968;Type=tandem-duplication;Left=chr15:99844133-99844519;Right=chr15:100131158-100131539
chr15	CG	SV	100131158	100131539	107	-	.	ID=968;Type=tandem-duplication;Left=chr15:99844133-99844519;Right=chr15:100131158-100131539
chr15	CG	SV	99968989	99983555	90	.	.	ID=4416;Type=probable-inversion;Left=chr15:99968989-99969491+;Right=chr15:99983163-99983555-;Distance=14566;DiscordantMatePairAlignments=90;LeftRepeat=;RightRepeat=Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr15	CG	SV	99968989	99969491	90	+	.	ID=4416;Type=probable-inversion;Left=chr15:99968989-99969491;Right=chr15:99983163-99983555
chr15	CG	SV	99983163	99983555	90	+	.	ID=4416;Type=probable-inversion;Left=chr15:99968989-99969491;Right=chr15:99983163-99983555
chr15	CG	SV	99981983	100040098	125	.	.	ID=234;Type=probable-inversion;Left=chr15:99981983-99982424-;Right=chr15:100039685-100040098+;Distance=57261;DiscordantMatePairAlignments=125;LeftRepeat=L1MCc:LINE:L1;RightRepeat=L1M5:LINE:L1;LeftGenes=;RightGenes=NM_152334:-;XRef=;Frequency=0.00
chr15	CG	SV	99981983	99982424	125	-	.	ID=234;Type=probable-inversion;Left=chr15:99981983-99982424;Right=chr15:100039685-100040098
chr15	CG	SV	100039685	100040098	125	-	.	ID=234;Type=probable-inversion;Left=chr15:99981983-99982424;Right=chr15:100039685-100040098
chr16	CG	SV	151991	160930	13	.	.	ID=2263;Type=deletion;Left=chr16:151991-152468+;Right=chr16:160588-160930+;Distance=8597;DiscordantMatePairAlignments=13;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSp:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	151991	152468	13	+	.	ID=2263;Type=deletion;Left=chr16:151991-152468;Right=chr16:160588-160930
chr16	CG	SV	160588	160930	13	+	.	ID=2263;Type=deletion;Left=chr16:151991-152468;Right=chr16:160588-160930
chr16	CG	SV	29716403	30966334	64	.	.	ID=964;Type=tandem-duplication;Left=chr16:29716403-29716800-;Right=chr16:30965766-30966334-;Distance=1249534;DiscordantMatePairAlignments=64;LeftRepeat=Self chain;RightRepeat=AluJo:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr16	CG	SV	29716403	29716800	64	-	.	ID=964;Type=tandem-duplication;Left=chr16:29716403-29716800;Right=chr16:30965766-30966334
chr16	CG	SV	30965766	30966334	64	-	.	ID=964;Type=tandem-duplication;Left=chr16:29716403-29716800;Right=chr16:30965766-30966334
chr17	CG	SV	65536290	65536914	30	.	.	ID=861;Type=tandem-duplication;Left=chr17:65536290-65536607-;Right=chr17:65536588-65536914-;Distance=307;DiscordantMatePairAlignments=30;LeftRepeat=L1P4e:LINE:L1;RightRepeat=L1P4e:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr17	CG	SV	65536290	65536607	30	-	.	ID=861;Type=tandem-duplication;Left=chr17:65536290-65536607;Right=chr17:65536588-65536914
chr17	CG	SV	65536588	65536914	30	-	.	ID=861;Type=tandem-duplication;Left=chr17:65536290-65536607;Right=chr17:65536588-65536914
chr18	CG	SV	69153643	69155435	13	.	.	ID=1908;Type=deletion;Left=chr18:69153643-69153998+;Right=chr18:69155235-69155435+;Distance=1592;DiscordantMatePairAlignments=13;LeftRepeat=AluY:SINE:Alu;Tandem A;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr18	CG	SV	69153643	69153998	13	+	.	ID=1908;Type=deletion;Left=chr18:69153643-69153998;Right=chr18:69155235-69155435
chr18	CG	SV	69155235	69155435	13	+	.	ID=1908;Type=deletion;Left=chr18:69153643-69153998;Right=chr18:69155235-69155435
chr19	CG	SV	966460	966995	27	.	.	ID=796;Type=tandem-duplication;Left=chr19:966460-966732-;Right=chr19:966714-966995-;Distance=263;DiscordantMatePairAlignments=27;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=NM_001033026:-;NM_033420:-;RightGenes=NM_001033026:-;NM_033420:-;XRef=;Frequency=0.06
chr19	CG	SV	966460	966732	27	-	.	ID=796;Type=tandem-duplication;Left=chr19:966460-966732;Right=chr19:966714-966995
chr19	CG	SV	966714	966995	27	-	.	ID=796;Type=tandem-duplication;Left=chr19:966460-966732;Right=chr19:966714-966995
chr19	CG	SV	9101118	14088676	79	.	.	ID=4259;Type=probable-inversion;Left=chr19:9101118-9101400+;Right=chr19:14088185-14088676-;Distance=4987558;DiscordantMatePairAlignments=79;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_002730:-;XRef=;Frequency=0.00
chr19	CG	SV	9101118	9101400	79	+	.	ID=4259;Type=probable-inversion;Left=chr19:9101118-9101400;Right=chr19:14088185-14088676
chr19	CG	SV	14088185	14088676	79	+	.	ID=4259;Type=probable-inversion;Left=chr19:9101118-9101400;Right=chr19:14088185-14088676
chr19	CG	SV	13125939	54305991	22	.	.	ID=67;Type=complex;Left=chr19:13125939-13126349-;Right=chr19:54305570-54305991+;Distance=41179221;DiscordantMatePairAlignments=22;LeftRepeat=Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_004907:+;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	13125939	13126349	22	-	.	ID=67;Type=complex;Left=chr19:13125939-13126349;Right=chr19:54305570-54305991
chr19	CG	SV	54305570	54305991	22	-	.	ID=67;Type=complex;Left=chr19:13125939-13126349;Right=chr19:54305570-54305991
chr19	CG	SV	14492663	60422800	16	.	.	ID=4252;Type=probable-inversion;Left=chr19:14492663-14493066+;Right=chr19:60422355-60422800-;Distance=45930137;DiscordantMatePairAlignments=16;LeftRepeat=AluJo:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	14492663	14493066	16	+	.	ID=4252;Type=probable-inversion;Left=chr19:14492663-14493066;Right=chr19:60422355-60422800
chr19	CG	SV	60422355	60422800	16	+	.	ID=4252;Type=probable-inversion;Left=chr19:14492663-14493066;Right=chr19:60422355-60422800
chr19	CG	SV	17303366	17311557	12	.	.	ID=791;Type=tandem-duplication;Left=chr19:17303366-17303753-;Right=chr19:17311356-17311557-;Distance=7804;DiscordantMatePairAlignments=12;LeftRepeat=AluSc:SINE:Alu;Self chain;RightRepeat=AluSg:SINE:Alu;Self chain;LeftGenes=NM_020959:-;RightGenes=NM_001128855:+;NM_032620:+;NM_133644:+;XRef=;Frequency=0.00
chr19	CG	SV	17303366	17303753	12	-	.	ID=791;Type=tandem-duplication;Left=chr19:17303366-17303753;Right=chr19:17311356-17311557
chr19	CG	SV	17311356	17311557	12	-	.	ID=791;Type=tandem-duplication;Left=chr19:17303366-17303753;Right=chr19:17311356-17311557
chr19	CG	SV	35039066	36521454	43	.	.	ID=1832;Type=deletion;Left=chr19:35039066-35039498+;Right=chr19:36520988-36521454+;Distance=1481922;DiscordantMatePairAlignments=43;LeftRepeat=Self chain;RightRepeat=Self chain;LeftGenes=;RightGenes=NM_020856:-;XRef=;Frequency=0.00
chr19	CG	SV	35039066	35039498	43	+	.	ID=1832;Type=deletion;Left=chr19:35039066-35039498;Right=chr19:36520988-36521454
chr19	CG	SV	36520988	36521454	43	+	.	ID=1832;Type=deletion;Left=chr19:35039066-35039498;Right=chr19:36520988-36521454
chr19	CG	SV	48220656	48548654	27	.	.	ID=755;Type=tandem-duplication;Left=chr19:48220656-48220955-;Right=chr19:48548271-48548654-;Distance=327699;DiscordantMatePairAlignments=27;LeftRepeat=SegDup;Self chain;RightRepeat=Self chain;LeftGenes=NM_001113410:-;NM_002785:-;NM_203287:-;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	48220656	48220955	27	-	.	ID=755;Type=tandem-duplication;Left=chr19:48220656-48220955;Right=chr19:48548271-48548654
chr19	CG	SV	48548271	48548654	27	-	.	ID=755;Type=tandem-duplication;Left=chr19:48220656-48220955;Right=chr19:48548271-48548654
chr19	CG	SV	57275869	63648169	20	.	.	ID=63;Type=probable-inversion;Left=chr19:57275869-57276266-;Right=chr19:63647895-63648169+;Distance=6371629;DiscordantMatePairAlignments=20;LeftRepeat=MER2:DNA:MER2_type;Self chain;RightRepeat=Self chain;LeftGenes=NM_001136499:-;RightGenes=;XRef=;Frequency=0.00
chr19	CG	SV	57275869	57276266	20	-	.	ID=63;Type=probable-inversion;Left=chr19:57275869-57276266;Right=chr19:63647895-63648169
chr19	CG	SV	63647895	63648169	20	-	.	ID=63;Type=probable-inversion;Left=chr19:57275869-57276266;Right=chr19:63647895-63648169
chr20	CG	SV	4879297	4920499	42	.	.	ID=1798;Type=deletion;Left=chr20:4879297-4879749+;Right=chr20:4919975-4920499+;Distance=40678;DiscordantMatePairAlignments=42;LeftRepeat=;RightRepeat=AluJo:SINE:Alu;LeftGenes=NM_005116:-;NM_203327:-;RightGenes=NM_005116:-;NM_203327:-;XRef=;Frequency=0.00
chr20	CG	SV	4879297	4879749	42	+	.	ID=1798;Type=deletion;Left=chr20:4879297-4879749;Right=chr20:4919975-4920499
chr20	CG	SV	4919975	4920499	42	+	.	ID=1798;Type=deletion;Left=chr20:4879297-4879749;Right=chr20:4919975-4920499
chr20	CG	SV	46808824	46811467	39	.	.	ID=1768;Type=deletion;Left=chr20:46808824-46809295+;Right=chr20:46811240-46811467+;Distance=2416;DiscordantMatePairAlignments=39;LeftRepeat=L2:LINE:L2;Self chain;RightRepeat=L2:LINE:L2;Self chain;LeftGenes=NM_020820:-;RightGenes=NM_020820:-;XRef=;Frequency=0.00
chr20	CG	SV	46808824	46809295	39	+	.	ID=1768;Type=deletion;Left=chr20:46808824-46809295;Right=chr20:46811240-46811467
chr20	CG	SV	46811240	46811467	39	+	.	ID=1768;Type=deletion;Left=chr20:46808824-46809295;Right=chr20:46811240-46811467
chr20	CG	SV	58545071	58558656	32	.	.	ID=1759;Type=deletion;Left=chr20:58545071-58545446+;Right=chr20:58558265-58558656+;Distance=13194;DiscordantMatePairAlignments=32;LeftRepeat=AluSq:SINE:Alu;RightRepeat=L1MA3:LINE:L1;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chr20	CG	SV	58545071	58545446	32	+	.	ID=1759;Type=deletion;Left=chr20:58545071-58545446;Right=chr20:58558265-58558656
chr20	CG	SV	58558265	58558656	32	+	.	ID=1759;Type=deletion;Left=chr20:58545071-58545446;Right=chr20:58558265-58558656
chr20	CG	SV	61862533	61863294	40	.	.	ID=1754;Type=deletion;Left=chr20:61862533-61862991+;Right=chr20:61863075-61863294+;Distance=542;DiscordantMatePairAlignments=40;LeftRepeat=AluY:SINE:Alu;Self chain;RightRepeat=AluSx:SINE:Alu;Self chain;LeftGenes=NM_025224:-;RightGenes=NM_025224:-;XRef=;Frequency=0.00
chr20	CG	SV	61862533	61862991	40	+	.	ID=1754;Type=deletion;Left=chr20:61862533-61862991;Right=chr20:61863075-61863294
chr20	CG	SV	61863075	61863294	40	+	.	ID=1754;Type=deletion;Left=chr20:61862533-61862991;Right=chr20:61863075-61863294
chr22	CG	SV	23780020	23783133	28	.	.	ID=1696;Type=deletion;Left=chr22:23780020-23780303+;Right=chr22:23782793-23783133+;Distance=2773;DiscordantMatePairAlignments=28;LeftRepeat=AluSx:SINE:Alu;Self chain;RightRepeat=AluSc:SINE:Alu;Self chain;LeftGenes=NM_001145206:+;RightGenes=NM_001145206:+;XRef=;Frequency=0.06
chr22	CG	SV	23780020	23780303	28	+	.	ID=1696;Type=deletion;Left=chr22:23780020-23780303;Right=chr22:23782793-23783133
chr22	CG	SV	23782793	23783133	28	+	.	ID=1696;Type=deletion;Left=chr22:23780020-23780303;Right=chr22:23782793-23783133
chrX	CG	SV	2957385	89432558	17	.	.	ID=4202;Type=probable-inversion;Left=chrX:2957385-2957632+;Right=chrX:89432171-89432558-;Distance=86475173;DiscordantMatePairAlignments=17;LeftRepeat=Self chain;RightRepeat=L1MEb:LINE:L1;SegDup;Self chain;LeftGenes=NM_001011719:+;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	2957385	2957632	17	+	.	ID=4202;Type=probable-inversion;Left=chrX:2957385-2957632;Right=chrX:89432171-89432558
chrX	CG	SV	89432171	89432558	17	+	.	ID=4202;Type=probable-inversion;Left=chrX:2957385-2957632;Right=chrX:89432171-89432558
chrX	CG	SV	11490196	13753775	15	.	.	ID=25;Type=probable-inversion;Left=chrX:11490196-11490715-;Right=chrX:13753204-13753775+;Distance=2262489;DiscordantMatePairAlignments=15;LeftRepeat=Self chain;RightRepeat=MLT1C:LTR:MaLR;Self chain;LeftGenes=NM_006125:-;NM_013427:-;RightGenes=NM_001001994:-;XRef=;Frequency=0.00
chrX	CG	SV	11490196	11490715	15	-	.	ID=25;Type=probable-inversion;Left=chrX:11490196-11490715;Right=chrX:13753204-13753775
chrX	CG	SV	13753204	13753775	15	-	.	ID=25;Type=probable-inversion;Left=chrX:11490196-11490715;Right=chrX:13753204-13753775
chrX	CG	SV	70226852	71661517	10	.	.	ID=696;Type=tandem-duplication;Left=chrX:70226852-70227303-;Right=chrX:71661125-71661517-;Distance=1434214;DiscordantMatePairAlignments=10;LeftRepeat=AluJb:SINE:Alu;Self chain;RightRepeat=MER1B:DNA:MER1_type;Self chain;LeftGenes=;RightGenes=NM_001166418:-;NM_001166419:-;NM_001166448:-;NM_018486:-;XRef=;Frequency=0.00
chrX	CG	SV	70226852	70227303	10	-	.	ID=696;Type=tandem-duplication;Left=chrX:70226852-70227303;Right=chrX:71661125-71661517
chrX	CG	SV	71661125	71661517	10	-	.	ID=696;Type=tandem-duplication;Left=chrX:70226852-70227303;Right=chrX:71661125-71661517
chrX	CG	SV	117905950	117908333	25	.	.	ID=1591;Type=deletion;Left=chrX:117905950-117906644+;Right=chrX:117907853-117908333+;Distance=1903;DiscordantMatePairAlignments=25;LeftRepeat=AluSc:SINE:Alu;RightRepeat=AluY:SINE:Alu;LeftGenes=;RightGenes=;XRef=;Frequency=0.00
chrX	CG	SV	117905950	117906644	25	+	.	ID=1591;Type=deletion;Left=chrX:117905950-117906644;Right=chrX:117907853-117908333
chrX	CG	SV	117907853	117908333	25	+	.	ID=1591;Type=deletion;Left=chrX:117905950-117906644;Right=chrX:117907853-117908333