Data
Download the "raw" data
Complete Genomics
The whole Complete Genomics package (including sequencing reads and analysis from Complete Genomics) is available on the European Nucleotide Archive (ENA) repository, accession number PRJEB3209
Supplementary Data
The supplementary data of the publication:
Data Tracks
Data tracks for offline browsing (e.g. IGV or compatible genome browser)
- Single Nucleotide Polymorphism (Complete Genomics sequencing)
- Complete Genomics algorithm
- Combined 8 samples of SNPs in one track
- CG 293
- CG 293S
- CG 293SG
- CG 293SGGD
- CG 293FTM
- CG 293T
- CG 293T_14
- CG 293T_DMBR
- RTG Investigator algorithm
- Gene Expression Profiles (Affymetrix exon array)
- Differentially expressed genes between cell lines (locus based)
- Mean probeset expression (extensive filtering)
- Mean probeset expression (extensive filtering and noise removed)
- Short-reads Alignment
- Complete Genomics local realignment
- Realign/HEK293
- Realign/HEK293S
- Realign/HEK293SG
- Realign/HEK293SGGD
- Realign/HEK293FTM
- Realign/HEK293T
- Realign/HEK293T_14
- Realign/HEK293T_DMBR
- Complete Genomics coverage plot
- Copy Number Variation (CNV)
- Complete Genomics CNV by HMM algorithm
- HMM/HEK293
- HMM/HEK293S
- HMM/HEK293SG
- HMM/HEK293SGGD
- HMM/HEK293FTM
- HMM/HEK293T
- HMM/HEK293T_14
- HMM/HEK293T_DMBR
- Complete Genomics CNV in 2kb window size
- 2KB/HEK293
- 2KB/HEK293S
- 2KB/HEK293SG
- 2KB/HEK293SGGD
- 2KB/HEK293FTM
- 2KB/HEK293T
- 2KB/HEK293T_14
- 2KB/HEK293T_DMBR
- CNV based on Illumina SNP array
- Structure variation
- All high confidence SV
- SV subtracted with another genome, low frequency
- Public data
- Broad public RNAi
- Public CG data
- YRI SNPs
- CEU SNPs
- 69 cell lines
- HG18 GC% 5bases
- HG18 segmental duplication
- GS12877-1100-36-avgNormalizedCvg
- GS12877-1100-36-gcCorrectedCvg
- GS12878-1100-36-avgNormalizedCvg
- GS12878-1100-36-gcCorrectedCvg
- GS12889-1100-36-avgNormalizedCvg
- GS12889-1100-36-gcCorrectedCvg
- GS12890-1100-36-avgNormalizedCvg
- GS12890-1100-36-gcCorrectedCvg
- GS12891-1100-36-avgNormalizedCvg
- GS12891-1100-36-gcCorrectedCvg
- GS12892-1100-36-avgNormalizedCvg
- GS12892-1100-36-gcCorrectedCvg
